BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012418
(464 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255584538|ref|XP_002532996.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223527225|gb|EEF29388.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 474
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/475 (84%), Positives = 434/475 (91%), Gaps = 12/475 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VS++GAVN +PL +NG+ VPS+ F G SLKKV+SK+ Q+ILS + KV +E
Sbjct: 1 MAAAVSSIGAVNR-VPLNLNGADAGPSVPSTAFFGSSLKKVNSKIIHQKILSGNLKVSAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
YDE+KQT +DRW GLAYDISDDQQDITRGKGMVD+LFQAPM +GTHYAVMSSYDY+SQGL
Sbjct: 60 YDEQKQTDKDRWGGLAYDISDDQQDITRGKGMVDSLFQAPMGTGTHYAVMSSYDYLSQGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDN +DG YIAPAFMDKVVVHITKNFLNLPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTREDRIGVC+GIFRTDNVPKEDIVKLVDTFPGQSIDFFGA+RARVYDDEVR
Sbjct: 300 MEKFYWAPTREDRIGVCTGIFRTDNVPKEDIVKLVDTFPGQSIDFFGAIRARVYDDEVRA 359
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
WIS +G+E +GKRLVNSKE PPTFEQPKMTLDKLLEYG MLV+EQENVKRVQLADKYL E
Sbjct: 360 WISTIGVENVGKRLVNSKEAPPTFEQPKMTLDKLLEYGSMLVKEQENVKRVQLADKYLKE 419
Query: 410 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
AALGDANDDAI+NGSFYGKAAQQVKVPVPEGCTDP+A N+DPTARSDDGSC Y+F
Sbjct: 420 AALGDANDDAIQNGSFYGKAAQQVKVPVPEGCTDPSAENFDPTARSDDGSCLYEF 474
>gi|359481752|ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Vitis vinifera]
gi|297740331|emb|CBI30513.3| unnamed protein product [Vitis vinifera]
Length = 474
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/475 (84%), Positives = 436/475 (91%), Gaps = 12/475 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA +ST+GAVN A PL +NGS + VPSS FLG SLKKVSSK++ R S +FKVV+E
Sbjct: 1 MAATISTLGAVNRA-PLNLNGSGTGASVPSSAFLGNSLKKVSSKIAHPRTSSGNFKVVAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DEEKQTS+D+W GLA+D SDDQQDITRGKGMVD+LFQAPM+SGTHYAVMSSYDYIS GL
Sbjct: 60 VDEEKQTSKDKWKGLAFDESDDQQDITRGKGMVDSLFQAPMDSGTHYAVMSSYDYISTGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDNT+DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTREDRIGVC+GIFR+DN+PKED+VKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCTGIFRSDNIPKEDMVKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
W++ VG+E IGK+LVNSKEGPPTFE+PKMTLDKLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WVASVGVEGIGKKLVNSKEGPPTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 410 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
AALGDAN+DAIK+GSFYGKAAQQV +PVPEGCTDP+A N+DPTARSDDGSC YQ
Sbjct: 420 AALGDANEDAIKSGSFYGKAAQQVNLPVPEGCTDPSANNFDPTARSDDGSCLYQI 474
>gi|290766481|gb|ADD60243.1| rubisco activase [Glycine max]
Length = 474
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/477 (85%), Positives = 429/477 (89%), Gaps = 16/477 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MAA V TVGAVN A LK+NGSS S V SS F G SLKKV+S+ S QR + ++FKV +
Sbjct: 1 MAASVPTVGAVNIA-QLKLNGSS--SRVTSSPFFGTSLKKVNSESSSQRGVCRNFKVSAQ 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
EYDEEKQTS+DRW GLAYD SDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYIS
Sbjct: 58 IEYDEEKQTSKDRWGGLAYDTSDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISA 117
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY+LDNT+DG YIAPAFMDK+VVHITKNFLNLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNTMDGFYIAPAFMDKIVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCEL 177
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+
Sbjct: 178 VFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRL 237
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTR+DRIGVC GIFRTD V KEDI+KLVDTF GQSIDFFGALRARVYDDEV
Sbjct: 298 GRMEKFYWAPTRDDRIGVCQGIFRTDGVLKEDIIKLVDTFLGQSIDFFGALRARVYDDEV 357
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKWIS VG+E IGK+LVNSKEGPPTFEQPKMTL KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 358 RKWISGVGVENIGKKLVNSKEGPPTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYL 417
Query: 408 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
+EAALGDANDDAIK G+FYG+ AQQV VPVPEGCTDP A NYDPTARSDDGSC Y+F
Sbjct: 418 NEAALGDANDDAIKTGNFYGQGAQQVHVPVPEGCTDPTAENYDPTARSDDGSCTYKF 474
>gi|356504250|ref|XP_003520910.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Glycine max]
Length = 474
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/477 (84%), Positives = 428/477 (89%), Gaps = 16/477 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MAA V TVGAVN A LK+NGSS S V SS F G SLKKV+S+ S QR + ++FKV +
Sbjct: 1 MAASVPTVGAVNIA-QLKLNGSS--SRVTSSPFFGTSLKKVNSESSSQRGVCRNFKVSAQ 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
EYDEEKQTS+DRW GLAYD SDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYIS
Sbjct: 58 IEYDEEKQTSKDRWGGLAYDTSDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISA 117
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY+LDNT+DG YIAPAFMDK+VVHITKNFLNLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNTMDGFYIAPAFMDKIVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCEL 177
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+
Sbjct: 178 VFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRL 237
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTR+DRIGVC GIFRTD V KEDI+KLVDTF GQSIDFFGALR RVYDDEV
Sbjct: 298 GRMEKFYWAPTRDDRIGVCQGIFRTDGVLKEDIIKLVDTFLGQSIDFFGALRXRVYDDEV 357
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKWIS VG+E IGK+LVNSKEGPPTFEQPKMTL KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 358 RKWISGVGVENIGKKLVNSKEGPPTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYL 417
Query: 408 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
+EAALGDANDDAIK G+FYG+ AQQV VPVPEGCTDP A NYDPTARSDDGSC Y+F
Sbjct: 418 NEAALGDANDDAIKTGNFYGQGAQQVHVPVPEGCTDPTAENYDPTARSDDGSCTYKF 474
>gi|255566442|ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223536483|gb|EEF38130.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 473
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/475 (81%), Positives = 424/475 (89%), Gaps = 13/475 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA +STVGAVN PL +NGS S VP+S F G SLKK++S + S SFKVVSE
Sbjct: 1 MAATISTVGAVNRT-PLALNGSGAGSSVPTSAFFGSSLKKLNSP-RFSKFSSGSFKVVSE 58
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
YDEEKQTS DRW GLAYD+SDDQQDITRGKGMVD+LFQAP ++GTHYAVMSSY+Y+S GL
Sbjct: 59 YDEEKQTSADRWGGLAYDMSDDQQDITRGKGMVDSLFQAPQDAGTHYAVMSSYEYLSTGL 118
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+K+PLILGIWGGKGQGKSFQCELVF
Sbjct: 119 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVF 178
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGG
Sbjct: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGG 238
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 298
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTREDRIGVC+GIF+TD V ED+VKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 299 MEKFYWAPTREDRIGVCTGIFKTDGVAPEDVVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
WI VG+E+IGK LVNSKEGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKY+SE
Sbjct: 359 WIGGVGVEKIGKSLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYMSE 418
Query: 410 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
AALG+AN D+I+ G+FYGKAAQQV +PVPEGCTDP A N+DPTARSDDGSC Y+F
Sbjct: 419 AALGEANQDSIERGTFYGKAAQQVNIPVPEGCTDPTAQNFDPTARSDDGSCTYKF 473
>gi|225434859|ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 1 [Vitis vinifera]
gi|297746032|emb|CBI16088.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/473 (81%), Positives = 424/473 (89%), Gaps = 12/473 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+GAVN PL +N S + VPSS F G SLKKVSS+ + +I S SFKVV+E
Sbjct: 1 MATTVSTIGAVNRT-PLSLNSSGTGASVPSSAFFGSSLKKVSSRFTHPKIASGSFKVVAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE +QT +DRW GLAYD+SDDQQDITRGKGMVD+LFQAPM+SGTHYAVMSSY+Y+S GL
Sbjct: 60 IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
+KMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAP REDRIGVC GIFR+DNVP +DIVK+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
WIS VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSE
Sbjct: 360 WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419
Query: 410 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 462
AALGDAN D+I+ G+FYGKAAQQV VPVPEGCTDP+AAN+DPTARSD+GSC Y
Sbjct: 420 AALGDANVDSIERGTFYGKAAQQVGVPVPEGCTDPSAANFDPTARSDNGSCQY 472
>gi|147856329|emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]
Length = 472
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/473 (81%), Positives = 423/473 (89%), Gaps = 12/473 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+GAVN PL +N S VPSS F G SLKKVSS+ + +I S SFKVV+E
Sbjct: 1 MATTVSTIGAVNRT-PLSLNSSGTGXSVPSSAFFGSSLKKVSSRFTHPKIASGSFKVVAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE +QT +DRW GLAYD+SDDQQDITRGKGMVD+LFQAPM+SGTHYAVMSSY+Y+S GL
Sbjct: 60 IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
+KMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAP REDRIGVC GIFR+DNVP +DIVK+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
WIS VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSE
Sbjct: 360 WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419
Query: 410 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 462
AALGDAN D+I+ G+FYGKAAQQV VPVPEGCTDP+AAN+DPTARSD+GSC Y
Sbjct: 420 AALGDANVDSIERGTFYGKAAQQVGVPVPEGCTDPSAANFDPTARSDNGSCQY 472
>gi|357469233|ref|XP_003604901.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355505956|gb|AES87098.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/477 (81%), Positives = 425/477 (89%), Gaps = 14/477 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA V+ VGA+N A LK+NGSS + +S F G SLKK S +S Q+ LS +FKV +
Sbjct: 1 MATSVTIVGAINMA-QLKLNGSSSGVPMTNSAFFGTSLKKARSAISSQKSLSGNFKVSAK 59
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+Y+EEKQTS+DRWAGLAYD SDDQQDITRGKG VD++FQAPM++GTHYAVMSSYDYIS
Sbjct: 60 IDYNEEKQTSKDRWAGLAYDTSDDQQDITRGKGKVDSVFQAPMDAGTHYAVMSSYDYIST 119
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY++DNT+DGLYIAPAFMDK+VVHITKNFLNLPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRQYNMDNTVDGLYIAPAFMDKLVVHITKNFLNLPNIKIPLILGIWGGKGQGKSFQCEL 179
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAKMGI+ GNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRM
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRM 239
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRD 299
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTR+DR+GVC GIFRTD VPK+DIVK+VDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRVGVCQGIFRTDGVPKDDIVKIVDTFPGQSIDFFGALRARVYDDEV 359
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
R WIS +G+E IGKRLVNSKEGPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 360 RNWISGIGVESIGKRLVNSKEGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 419
Query: 408 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
SEAALGDANDDAIK G+FYG+ AQQV +PV EGC DP+A NYDPTARSDDGSC Y F
Sbjct: 420 SEAALGDANDDAIKTGNFYGQGAQQVPLPVQEGCADPSAENYDPTARSDDGSCTYTF 476
>gi|68565782|sp|Q7X9A0.1|RCA1_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
AltName: Full=RuBisCO activase alpha form; Flags:
Precursor
gi|32481065|gb|AAP83929.1| Rubisco activase alpha form precursor [Larrea tridentata]
Length = 476
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/479 (82%), Positives = 429/479 (89%), Gaps = 18/479 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA STVGAVN A PL +NGS +R SLVPS+ F G SLKK ++K + S +FK+V+
Sbjct: 1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVA 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM+SGTHYAVMSSYDYISQ
Sbjct: 58 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 177
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM
Sbjct: 178 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 237
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRARVY DEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEV 357
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKW+SEVG++ IGK+LVNSKEGPP+FEQPKMT+DKLL YG MLVQEQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYM 417
Query: 408 SEAALGDANDDAIKNGSFY-GKAAQQV-KVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
SEAALGDAN+DAIK G+FY G+AAQQV VPVPEGCTDP A NYDPTARSDDGSC Y+F
Sbjct: 418 SEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>gi|115334977|gb|ABI94076.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/476 (81%), Positives = 422/476 (88%), Gaps = 14/476 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N+A PL +NGS + S VP+S F G SLKKV+S+ ++ S SFKVV+
Sbjct: 1 MAAAVSTVGAINSA-PLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +D+W GLAYD SDDQQDITRGKG+VD+LFQAP +GTHYAVMSSYDYIS G
Sbjct: 60 EIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAPSGTGTHYAVMSSYDYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y L+N++DG YIAPAFMDK+VVHITKNF++LPN+K+PLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRTY-LENSMDGFYIAPAFMDKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGI-----------NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
FAKMGI +GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFR+DNV +++KLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRSDNVADGELIKLVDTFPGQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
KWIS +G++ IGK LVNSK GPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYLS
Sbjct: 359 KWISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLS 418
Query: 409 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
EAALGDANDDAIK GSFYGKAAQQV VPVPEGCTD AANYDPTARSDDGSC Y
Sbjct: 419 EAALGDANDDAIKRGSFYGKAAQQVNVPVPEGCTDRNAANYDPTARSDDGSCQYTL 474
>gi|363806750|ref|NP_001242531.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766483|gb|ADD60244.1| rubisco activase [Glycine max]
Length = 478
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/477 (80%), Positives = 425/477 (89%), Gaps = 16/477 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVS-SKVSQQRILSKSFKVVS 59
MAA VST+GAVN A PL +N S VPSS F G SLKKV+ S+V +I S SFK+V+
Sbjct: 1 MAASVSTIGAVNRA-PLSLNSSEAGDSVPSSAFFGTSLKKVTASRVPNVKISSGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E DE++QT++DRW GLAYDISDDQQDITRGKGMVD+LFQAP E+GTHYAVMSS++Y+
Sbjct: 60 AEKEIDEQQQTNKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQETGTHYAVMSSFEYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GL+QY+LDN +DG YIAPAFMDK+V HITKNF+ LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 STGLKQYNLDNNMDGFYIAPAFMDKLVAHITKNFMTLPNIKVPLILGIWGGKGQGKSFQC 179
Query: 177 ELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
ELVFAKMGIN GNAGEPAKLIRQRYREAADII KGKMCCLFINDLD GAG
Sbjct: 180 ELVFAKMGINPIMMGAGELESGNAGEPAKLIRQRYREAADIISKGKMCCLFINDLDVGAG 239
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRVPIIVTGNDFSTLYAPLI
Sbjct: 240 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLI 299
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRMEKFYWAPTR+DR+GVC GIFRTDNVP+++IVKLVDTFPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPEDEIVKLVDTFPGQSIDFFGALRARVYDD 359
Query: 346 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
EVRKWIS VG++ IGK+LVNSKEGPPTF+QPKMTL KLLEYG MLVQEQENVKRVQLADK
Sbjct: 360 EVRKWISGVGVDLIGKKLVNSKEGPPTFDQPKMTLSKLLEYGNMLVQEQENVKRVQLADK 419
Query: 406 YLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 462
YL+EAALGDAN DAIK G+FYGKAAQQVK+PVPEGCTDP A+N+DPTARSDDG+C Y
Sbjct: 420 YLNEAALGDANQDAIKRGTFYGKAAQQVKIPVPEGCTDPNASNFDPTARSDDGTCLY 476
>gi|358248528|ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766479|gb|ADD60242.1| alpha-form rubisco activase [Glycine max]
gi|290766489|gb|ADD60247.1| alpha-form rubisco activase [Glycine max]
Length = 478
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/477 (80%), Positives = 425/477 (89%), Gaps = 16/477 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN A PL +N S + VPSS F G SLKKV +S+V +I S SFK+V+
Sbjct: 1 MAASVSTVGAVNGA-PLSLNSSGAGASVPSSAFFGTSLKKVIASRVPNVKISSGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E DE++QT +DRW GLAYD+SDDQQDITRGKG+VD+LFQAP ++GTHYA+MSSY+Y+
Sbjct: 60 AEKEIDEKQQTDKDRWKGLAYDVSDDQQDITRGKGLVDSLFQAPQDTGTHYAIMSSYEYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GL+QY+LDN +DG YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 STGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQC 179
Query: 177 ELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
ELVFAKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGAG
Sbjct: 180 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAG 239
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLI
Sbjct: 240 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 299
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRMEKFYWAPTR+DR+GVC+GIFRTDNVPK+DIVKLVDTFPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTRDDRVGVCNGIFRTDNVPKDDIVKLVDTFPGQSIDFFGALRARVYDD 359
Query: 346 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
EVRKWIS VG++ IGK+LVNSKEGPPTF+QPKMTL KLLEYG MLVQEQENVKRVQLADK
Sbjct: 360 EVRKWISVVGVDFIGKKLVNSKEGPPTFDQPKMTLSKLLEYGNMLVQEQENVKRVQLADK 419
Query: 406 YLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 462
YL EAALGDAN D+I G+FYGKAAQQV +PVPEGCTDP A+N+DPTARSDDG+C Y
Sbjct: 420 YLKEAALGDANQDSINRGTFYGKAAQQVNIPVPEGCTDPNASNFDPTARSDDGTCLY 476
>gi|115334981|gb|ABI94078.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/476 (81%), Positives = 419/476 (88%), Gaps = 14/476 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVG VN+A PL +NGS + S VP+S F G SLKKV+S+ ++ S SFKVV+
Sbjct: 1 MAAAVSTVGTVNSA-PLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +D+W GLAYD SDDQQDITRGKG+VD+LFQAP +GTHYAVMSSYDYIS G
Sbjct: 60 EIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAPSGTGTHYAVMSSYDYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y L+N++DG YIAP FM K+VVHITKNF++LPN+K+PLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRTY-LENSMDGFYIAPVFMGKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGI-----------NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
FAKMGI +GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFR+DNV +++KLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRSDNVADNELIKLVDTFPGQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
KWIS +G++ IGK LVNSK GPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYLS
Sbjct: 359 KWISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLS 418
Query: 409 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
EAALGDANDDAIK GSFYGKAAQQV VPVPEGCTD AANYDPTARSDDGSC Y
Sbjct: 419 EAALGDANDDAIKRGSFYGKAAQQVNVPVPEGCTDRNAANYDPTARSDDGSCQYTL 474
>gi|357492323|ref|XP_003616450.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355517785|gb|AES99408.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/476 (80%), Positives = 418/476 (87%), Gaps = 13/476 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
M A VS V AV+ PL +N S + VPSS F G SLKKV+S++ ++ S FK+V+
Sbjct: 1 MVASVSAVRAVSGT-PLSLNSSGAVASVPSSSFFGTSLKKVTSRLPNTKVSSGRFKIVAA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E +E KQT +DRW GLAYD SDDQQDITRGKGMVDT+FQAP +SGTHYAVMSSY+YIS G
Sbjct: 60 EINESKQTDKDRWRGLAYDTSDDQQDITRGKGMVDTVFQAPQDSGTHYAVMSSYEYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDNT+DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQ ELV
Sbjct: 120 LRQYNLDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQAELV 179
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
FAKMGIN GNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRMG
Sbjct: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMG 239
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDG 299
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFR DNVP+ED+VK+VDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 300 RMEKFYWAPTREDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVR 359
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
KWI+ VGIE IGK+LVNSKEGPPTF+QPKM+L+KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 360 KWIAGVGIETIGKKLVNSKEGPPTFDQPKMSLEKLLEYGNMLVQEQENVKRVQLADKYLE 419
Query: 409 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
AALGDAN DAIK+GSFYGKAAQQV +P+PEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 420 GAALGDANQDAIKSGSFYGKAAQQVNIPIPEGCTDPNAKNFDPTARSDDGTCLYTF 475
>gi|118489105|gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 476
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/477 (79%), Positives = 425/477 (89%), Gaps = 14/477 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I S SFKVV+
Sbjct: 1 MAATISTVGAVNTA-PLALNGSGAGSTVPNSAFFGNSLKKVSSSRFTNSKISSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
EYDE+KQT +DRW GL D+SDDQQDITRGKGMVD+LFQAP +GTH ++SSY+Y+SQG
Sbjct: 60 EYDEKKQTDKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPILSSYEYLSQG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRTYNLDNNMDGYYIAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELV 179
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 227
FAKMGIN GNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR+
Sbjct: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRL 239
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRD 299
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTR+DRIGVC GIF++D + KEDIVKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRIGVCIGIFKSDKIAKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 359
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKWIS VG++ IGK+LVNS++GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 360 RKWISGVGVDSIGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 419
Query: 408 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
SEA+LG+AN D+I G+FYG+AAQQVKVPV EGCTDP AAN+DPTARSDDGSC Y+F
Sbjct: 420 SEASLGEANQDSIDRGTFYGQAAQQVKVPVAEGCTDPNAANFDPTARSDDGSCTYKF 476
>gi|118486739|gb|ABK95205.1| unknown [Populus trichocarpa]
Length = 475
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/476 (80%), Positives = 426/476 (89%), Gaps = 15/476 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I S SFKVV+
Sbjct: 1 MAATISTVGAVNRA-PLALNGSGAGSTVPTSAFFGNSLKKVSSSRFTNSKISSGSFKVVA 59
Query: 60 E-YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E YDEEKQT +DRW GL D+SDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+SQ
Sbjct: 60 EEYDEEKQTEKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPVLSSYEYLSQ 119
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLR Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRTYNLDNMMDGFYIAPAFMDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGR 226
VFAKMGI+ GNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGR 239
Query: 227 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 286
+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIR
Sbjct: 240 LGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIR 299
Query: 287 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 346
DGRMEKFYWAPTREDRIGVC GIF+TDNVP++DIVKLVDTFPGQSIDFFGALRARVYDDE
Sbjct: 300 DGRMEKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDE 359
Query: 347 VRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
VRKW+S VG+E IGK+LVNS+EGPPTFEQP MT++KL EYG MLV+EQENVKRVQLADKY
Sbjct: 360 VRKWVSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKY 419
Query: 407 LSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 462
LS+AALG+AN DAI+ G+FYG+AAQQVKVP+PEGCTDP AAN+DPTARSDDGSC+Y
Sbjct: 420 LSDAALGEANQDAIERGTFYGQAAQQVKVPIPEGCTDPNAANFDPTARSDDGSCSY 475
>gi|118487547|gb|ABK95600.1| unknown [Populus trichocarpa]
Length = 476
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/477 (79%), Positives = 425/477 (89%), Gaps = 14/477 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I SFKVV+
Sbjct: 1 MAATISTVGAVNTA-PLALNGSGAGSTVPNSAFFGNSLKKVSSSRFTNSKISPGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
EYDE+KQT +DRW GL D+SDDQQDI+RGKGMVD+LFQAP +GTH V++SY+Y+SQG
Sbjct: 60 EYDEKKQTDKDRWGGLVTDMSDDQQDISRGKGMVDSLFQAPQGTGTHNPVLNSYEYLSQG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 120 LRTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGVWGGKGQGKSFQCELV 179
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 227
FAKMGIN GNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR+
Sbjct: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRL 239
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 299
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTR+DRIGVC GIF++D +PKEDIVKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 359
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKW+S VG++ IGK+LVNS+EGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 360 RKWVSGVGVDSIGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 419
Query: 408 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
SEA+LG+AN D+I G+FYG+AAQQVKVPV EGCTDP AAN+DPTARSDDGSC Y+F
Sbjct: 420 SEASLGEANQDSIDRGTFYGQAAQQVKVPVAEGCTDPNAANFDPTARSDDGSCTYKF 476
>gi|307136240|gb|ADN34076.1| ribulose bisphosphate carboxylase/oxygenase activase 1 [Cucumis
melo subsp. melo]
Length = 474
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/475 (79%), Positives = 418/475 (88%), Gaps = 16/475 (3%)
Query: 5 VSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILS-KSFKVVS---E 60
++T GAVN +PL +NG+ V SS FLG +LKK + + ++ S SFKVV+ E
Sbjct: 1 MATAGAVNR-IPLSLNGAIAGPSVQSSTFLGSNLKKANFRFPNSKVSSGSSFKVVAVAEE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE+KQT++D+W GLA+DISDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+S GL
Sbjct: 60 IDEKKQTNKDKWKGLAFDISDDQQDITRGKGMVDSLFQAPTGAGTHDPVLSSYEYLSAGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDN ++G YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNDVEGFYIAPAFMDKLVVHITKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AKMGIN GNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGG 239
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTREDRIGVCSGIFR+DN+PKEDI+KLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCSGIFRSDNIPKEDIIKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
W S VG+E I K+LVNSKEGPPT EQPKMTL+KLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WASSVGVENIAKKLVNSKEGPPTLEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 410 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
AALGDAN+DAIK G+FYGKAAQQV +P+PEGCTDP A N+DPTARSDDGSCNY F
Sbjct: 420 AALGDANEDAIKRGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVF 474
>gi|449441384|ref|XP_004138462.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 474
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/473 (79%), Positives = 416/473 (87%), Gaps = 16/473 (3%)
Query: 5 VSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKV-SQQRILSKSFKVVS---E 60
++T GAVN +PL +NG+ V SS FLG SLKK + + S + SFKVV+ E
Sbjct: 1 MATAGAVNR-IPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE+KQTS+D+W GLA+D+SDDQQDITRGKGMVDTLFQAP +GTH V+SSY+Y+S GL
Sbjct: 60 IDEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+ DN +DG YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AKMGIN GNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGG 239
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTREDRIGVCSGIFR+DN+PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 300 MEKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRN 359
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
W+ VG+E I K+LVNSKEGPPTFEQPKMTL+KLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WVCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 410 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 462
AALGDAN+DAIK+G+FYGKAAQQV +P+PEGCTDP A N+DPTARSDDGSCNY
Sbjct: 420 AALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNY 472
>gi|297827581|ref|XP_002881673.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
gi|297327512|gb|EFH57932.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
Length = 474
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/476 (77%), Positives = 409/476 (85%), Gaps = 14/476 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS S + P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAASAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKG+VD++FQAPM +GTH+AV+SSY+YISQG
Sbjct: 60 -VKEDKQTDGDRWKGLAYDTSDDQQDITRGKGLVDSVFQAPMGTGTHHAVLSSYEYISQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
AKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
K++ +G+E+IGKRLVNS+EGPP FEQP+MTL+KL+EYG MLV EQENVKRVQLAD YLS
Sbjct: 359 KFVEGLGVEKIGKRLVNSREGPPVFEQPEMTLEKLMEYGNMLVMEQENVKRVQLADTYLS 418
Query: 409 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
+AALGDAN DAI G+FYGK AQQV +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 419 QAALGDANADAIDRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gi|18405145|ref|NP_565913.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|12643259|sp|P10896.2|RCA_ARATH RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|11762250|gb|AAG40401.1|AF325049_1 At2g39730 [Arabidopsis thaliana]
gi|166834|gb|AAA20202.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|2642155|gb|AAB87122.1| expressed protein [Arabidopsis thaliana]
gi|15810188|gb|AAL06995.1| At2g39730/T5I7.3_ [Arabidopsis thaliana]
gi|21594581|gb|AAM66023.1| unknown [Arabidopsis thaliana]
gi|330254620|gb|AEC09714.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 474
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/476 (77%), Positives = 407/476 (85%), Gaps = 14/476 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
AKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 409 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
+AALGDAN DAI G+FYGK AQQV +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 419 QAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gi|15450379|gb|AAK96483.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/476 (76%), Positives = 406/476 (85%), Gaps = 14/476 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
AKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FP QSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 409 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
+AALGDAN DAI G+FYGK AQQV +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 419 QAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gi|23308421|gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/476 (76%), Positives = 405/476 (85%), Gaps = 14/476 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
AKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FP QSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 409 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
+AALGDAN DAI G+FYGK AQQV +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 419 QAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gi|12620883|gb|AAG61121.1|AF329935_1 ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2
[Gossypium hirsutum]
Length = 435
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/431 (83%), Positives = 391/431 (90%), Gaps = 14/431 (3%)
Query: 48 QRILSKSFKVVS---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESG 104
+++ S SFKV++ E DEE QT +DRW GLAYDISDDQQDITRGKGMVD+LFQAPM G
Sbjct: 5 RQVPSGSFKVMAAEKEIDEETQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPMNDG 64
Query: 105 THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGI 164
THYAVMSSY+YISQGL+ Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGI
Sbjct: 65 THYAVMSSYEYISQGLKTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGI 124
Query: 165 WGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMC 213
WGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMC
Sbjct: 125 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 184
Query: 214 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT 273
LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVT
Sbjct: 185 ALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVT 244
Query: 274 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSID 333
GNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFRTD V EDIVKLVDTFPGQSID
Sbjct: 245 GNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDGVRDEDIVKLVDTFPGQSID 304
Query: 334 FFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 393
FFGALRARVYDDEVRKWISEVG+ +GK+LVNS+EGPPTFEQPKMT++KLLEYG MLV E
Sbjct: 305 FFGALRARVYDDEVRKWISEVGVASVGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVAE 364
Query: 394 QENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTA 453
QENVKRVQLADKYLSEAALG+AN+D+I G+FYGKAAQQV VPVPEGCTDP A N+DPTA
Sbjct: 365 QENVKRVQLADKYLSEAALGEANEDSINRGTFYGKAAQQVGVPVPEGCTDPNADNFDPTA 424
Query: 454 RSDDGSCNYQF 464
RSDDG+C Y+F
Sbjct: 425 RSDDGTCTYKF 435
>gi|78100212|gb|ABB20913.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2
[Gossypium hirsutum]
Length = 421
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/416 (84%), Positives = 382/416 (91%), Gaps = 11/416 (2%)
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DEE QT +DRW GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+Y+SQG
Sbjct: 6 EIDEETQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYLSQG 65
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
L+ Y+LDN +DG YIAPAFMDK+VVHITKNF++LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 66 LKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELV 125
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
FAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRMG
Sbjct: 126 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMG 185
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 186 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 245
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTR+DR+GVC GIFRTD +P EDIVKLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 246 RMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 305
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
KWIS+VG+ +GK+LVNS++GPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLS
Sbjct: 306 KWISDVGVAGVGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLS 365
Query: 409 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
EAALG+AN+D+I G+FYGKAAQQV VPVPEGCTDP A N+DPTARSDDG+C YQF
Sbjct: 366 EAALGEANEDSINRGTFYGKAAQQVGVPVPEGCTDPNADNFDPTARSDDGTCTYQF 421
>gi|68565781|sp|Q7X999.1|RCA2_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
AltName: Full=RuBisCO activase beta form; Flags:
Precursor
gi|32481067|gb|AAP83930.1| Rubisco activase beta form precursor [Larrea tridentata]
Length = 435
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/438 (83%), Positives = 396/438 (90%), Gaps = 16/438 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA STVGAVN A PL +NGS +R SLVPS+ F G SLKK ++K + S +FK+V+
Sbjct: 1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVA 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM+SGTHYAVMSSYDYISQ
Sbjct: 58 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 177
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM
Sbjct: 178 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 237
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTREDRIGVC GIFRTDNVP+EDIVK+VD FPGQSIDFFGALRARVYDDEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEV 357
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKW+SEVG++ IGK+LVNSKEGPPTFEQPKMT+DKLL+YG MLV+EQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYM 417
Query: 408 SEAALGDANDDAIKNGSF 425
SEAALGDAN DAIK G+F
Sbjct: 418 SEAALGDANQDAIKRGTF 435
>gi|13430332|gb|AAK25798.1|AF338237_1 rubisco activase, partial [Zantedeschia aethiopica]
Length = 436
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/436 (81%), Positives = 388/436 (88%), Gaps = 12/436 (2%)
Query: 41 VSSKVSQQRILSKSFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQA 99
V+ + R + + KV++ + DE KQT DRWAGL D SDDQQDITRGKGMVD+LFQA
Sbjct: 1 VNPSLGHGRTSTGTLKVMAADLDESKQTKTDRWAGLYTDTSDDQQDITRGKGMVDSLFQA 60
Query: 100 PMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVP 159
PM GTH V+SSY+YIS GLR ++LDNT++GLYIAPAFMDK+VVHITKNF+NLPN+K+P
Sbjct: 61 PMGDGTHNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIP 120
Query: 160 LILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIK 208
LILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+
Sbjct: 121 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR 180
Query: 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268
KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRV
Sbjct: 181 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRV 240
Query: 269 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFP 328
PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC+GIFR+DNVPKED++KLVDTFP
Sbjct: 241 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFP 300
Query: 329 GQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGR 388
GQSIDFFGALRARVYDDEVRKWI+E+G++ +GKRLVNS EGPPTF QPKMTLDKLLEYG
Sbjct: 301 GQSIDFFGALRARVYDDEVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGN 360
Query: 389 MLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAAN 448
MLVQEQENVKRVQLADKYLSEAALGDAN DAIK GSFYGKAAQQ VPVPEGCTD A N
Sbjct: 361 MLVQEQENVKRVQLADKYLSEAALGDANQDAIKTGSFYGKAAQQANVPVPEGCTDRNATN 420
Query: 449 YDPTARSDDGSCNYQF 464
+DPTARSDDGSC Y
Sbjct: 421 FDPTARSDDGSCLYTL 436
>gi|359478916|ref|XP_003632187.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 2 [Vitis vinifera]
Length = 440
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/439 (81%), Positives = 392/439 (89%), Gaps = 12/439 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+GAVN PL +N S + VPSS F G SLKKVSS+ + +I S SFKVV+E
Sbjct: 1 MATTVSTIGAVNRT-PLSLNSSGTGASVPSSAFFGSSLKKVSSRFTHPKIASGSFKVVAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE +QT +DRW GLAYD+SDDQQDITRGKGMVD+LFQAPM+SGTHYAVMSSY+Y+S GL
Sbjct: 60 IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
+KMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAP REDRIGVC GIFR+DNVP +DIVK+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
WIS VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSE
Sbjct: 360 WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419
Query: 410 AALGDANDDAIKNGSFYGK 428
AALGDAN D+I+ G+FYG+
Sbjct: 420 AALGDANVDSIERGTFYGQ 438
>gi|13430336|gb|AAK25800.1|AF338239_1 rubisco activase [Zantedeschia aethiopica]
Length = 426
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/419 (83%), Positives = 380/419 (90%), Gaps = 11/419 (2%)
Query: 57 VVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
+ ++ DE KQT DRWAGL D SDDQQDITRGKGMVD+LFQAPM GTH V+SSY+YI
Sbjct: 8 MAADLDESKQTKTDRWAGLYTDTSDDQQDITRGKGMVDSLFQAPMGDGTHNPVLSSYEYI 67
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GLR ++LDNT++GLYIAPAFMDK+VVHITKNF+NLPN+K+PLILGIWGGKGQGKSFQC
Sbjct: 68 STGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPLILGIWGGKGQGKSFQC 127
Query: 177 ELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
ELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAG
Sbjct: 128 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAG 187
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRVPIIVTGNDFSTLYAPLI
Sbjct: 188 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLI 247
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRMEKFYWAPTR+DR+GVC+GIFR+DNVPKED++KLVDTFPGQSIDFFGALRARVYDD
Sbjct: 248 RDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSIDFFGALRARVYDD 307
Query: 346 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
EVRKWI+E+G++ +GKRLVNS EGPPTF QPKMTLDKLLEYG MLVQEQENVKRVQLADK
Sbjct: 308 EVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQEQENVKRVQLADK 367
Query: 406 YLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
YLSEAALGDAN DAIK GSFYGKAAQQ VPVPEGCTD A N+DPTARSDDGSC Y
Sbjct: 368 YLSEAALGDANQDAIKTGSFYGKAAQQANVPVPEGCTDRNATNFDPTARSDDGSCLYTL 426
>gi|109940135|sp|P93431.2|RCA_ORYSJ RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8918359|dbj|BAA97583.1| RuBisCO activase large isoform precursor [Oryza sativa (japonica
cultivar-group)]
gi|32352158|dbj|BAC78572.1| ribulose-bisphosphate carboxylase activase large isoform precursor
protein [Oryza sativa Japonica Group]
gi|77552725|gb|ABA95522.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|125578108|gb|EAZ19330.1| hypothetical protein OsJ_34880 [Oryza sativa Japonica Group]
gi|218186228|gb|EEC68655.1| hypothetical protein OsI_37096 [Oryza sativa Indica Group]
Length = 466
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/448 (80%), Positives = 393/448 (87%), Gaps = 16/448 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITK 148
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 138
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIR 197
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 198
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 199 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 258
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 317
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 259 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 318
Query: 318 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 377
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 319 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378
Query: 378 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQV-KVP 436
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG+ AQQ +P
Sbjct: 379 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLP 438
Query: 437 VPEGCTDPAAANYDPTARSDDGSCNYQF 464
VPEGCTDP A N+DPTARSDDGSC Y F
Sbjct: 439 VPEGCTDPVAKNFDPTARSDDGSCLYTF 466
>gi|225449432|ref|XP_002282979.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic [Vitis vinifera]
Length = 438
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/438 (81%), Positives = 395/438 (90%), Gaps = 13/438 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRF-SLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MA VSTVGAVN AL L +NG+S + VPSS FLG SLKKV+S+ + ++ S SFKVV+
Sbjct: 1 MATAVSTVGAVNRAL-LSLNGASGAGASVPSSAFLGSSLKKVNSRFTHSKVSSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E D++ QT +D+W GLA+D SDDQQDI RGKGMVD+LFQAPM++GTHYAVMSSY+YIS G
Sbjct: 60 EVDDDMQTEKDKWKGLAFDTSDDQQDIVRGKGMVDSLFQAPMDAGTHYAVMSSYEYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 179
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
F+KMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+G
Sbjct: 180 FSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLG 239
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVP+IVTGNDFSTLYAPLIRDG
Sbjct: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVIVTGNDFSTLYAPLIRDG 299
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC+GIFRTDNVP EDIVKLVDTFPGQSIDFFGALRARVYDD VR
Sbjct: 300 RMEKFYWAPTREDRIGVCTGIFRTDNVPVEDIVKLVDTFPGQSIDFFGALRARVYDDMVR 359
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
WI+ +G++ +GKRLVNSKEGPP+FEQPKMTL+KLLEYG MLVQEQENVKRVQLADKYL+
Sbjct: 360 DWIAGIGVDTVGKRLVNSKEGPPSFEQPKMTLEKLLEYGSMLVQEQENVKRVQLADKYLN 419
Query: 409 EAALGDANDDAIKNGSFY 426
EAALGDAN+DAIK+GSF+
Sbjct: 420 EAALGDANEDAIKSGSFF 437
>gi|407911668|gb|AFU50382.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform a [Ipomoea batatas]
Length = 484
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/484 (75%), Positives = 411/484 (84%), Gaps = 22/484 (4%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVS------SKVSQQRIL--- 51
MAA VST+GAVN +L L +N S S VPSS F GK LKK S SK+S R +
Sbjct: 1 MAATVSTIGAVNKSL-LSLNNGSVGSSVPSSGFFGKGLKKTSGQRVAMSKISNSRQMRVA 59
Query: 52 -SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVM 110
E DE+KQT+QDRW GL DISDDQQDITRGKG+VD+LFQAPM +GTH+AV+
Sbjct: 60 AEAPEAAEPEIDEQKQTNQDRWKGLVEDISDDQQDITRGKGLVDSLFQAPMGTGTHHAVL 119
Query: 111 SSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQ 170
SSY+YISQGLR+Y++DNTLDG YIAPAFMDK+VVHITKNFL LPN+K+PLILG+WGGKGQ
Sbjct: 120 SSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQ 179
Query: 171 GKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 219
GKSFQCELVF KMGIN GNAGEPAKLIRQRYREAA+II+KG MC LFIND
Sbjct: 180 GKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCVLFIND 239
Query: 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 279
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFST
Sbjct: 240 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST 299
Query: 280 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 339
LYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD VP E +VKLVDTFPGQSIDFFGALR
Sbjct: 300 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALR 359
Query: 340 ARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 399
ARVYDDEVRK+I+ +G++ + +RL+NS++GPP F+QPKMT++KLL+YG MLVQEQENVKR
Sbjct: 360 ARVYDDEVRKFIASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYMLVQEQENVKR 419
Query: 400 VQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGS 459
VQLADKYL EAALGDAN+DAIKNG+FYG+ AQ + VPEGCTDP A+N+DPTARSDDG+
Sbjct: 420 VQLADKYLKEAALGDANEDAIKNGNFYGQGAQSGNLKVPEGCTDPQASNFDPTARSDDGT 479
Query: 460 CNYQ 463
C YQ
Sbjct: 480 CTYQ 483
>gi|357155664|ref|XP_003577195.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic-like [Brachypodium distachyon]
Length = 465
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/452 (79%), Positives = 394/452 (87%), Gaps = 16/452 (3%)
Query: 28 VPSSVFLGKSLKK-VSSKVSQQRILSKS--FKVVS-EYDEEKQTSQDRWAGLAYDISDDQ 83
P+S FLGK LKK V+S V+ +K+ F V++ E DE KQT QDRW GLAYDISDDQ
Sbjct: 15 TPTS-FLGKKLKKQVTSAVNYHGKSTKANRFTVMAKEVDESKQTDQDRWKGLAYDISDDQ 73
Query: 84 QDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV 143
QDITRGKG+VD+LFQAPM GTH AV+SS +YISQGLR+Y DNT+ G YIAPAFMDK+V
Sbjct: 74 QDITRGKGIVDSLFQAPMGDGTHVAVLSSQEYISQGLRKYDFDNTMGGFYIAPAFMDKLV 133
Query: 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEP 192
VH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEP
Sbjct: 134 VHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193
Query: 193 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 252
AKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT
Sbjct: 194 AKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPT 253
Query: 253 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRT 312
NVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+T
Sbjct: 254 NVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCRGIFQT 313
Query: 313 DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPT 372
DN+ E ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+S GIE IGK+LVNSK+GP +
Sbjct: 314 DNISDESVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSSTGIENIGKKLVNSKDGPVS 373
Query: 373 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQ 432
FEQPKMT++KLLEYG MLVQEQ+NVKRVQLADKY+SEAALGDAN DA+K GSFYGK AQQ
Sbjct: 374 FEQPKMTIEKLLEYGHMLVQEQDNVKRVQLADKYMSEAALGDANSDAMKTGSFYGKGAQQ 433
Query: 433 VKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
+PVPEGCTD A NYDPTARSDDGSC Y F
Sbjct: 434 GNLPVPEGCTDRNAENYDPTARSDDGSCLYTF 465
>gi|224109480|ref|XP_002315210.1| predicted protein [Populus trichocarpa]
gi|222864250|gb|EEF01381.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/421 (82%), Positives = 387/421 (91%), Gaps = 12/421 (2%)
Query: 54 SFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
SFKVV+EYDE+KQT +DRW GL D+SDDQQDI+RGKGMVD+LFQAP +GTH V++SY
Sbjct: 4 SFKVVAEYDEKKQTDKDRWGGLVTDMSDDQQDISRGKGMVDSLFQAPQGTGTHNPVLNSY 63
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+Y+SQGLR Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILG+WGGKGQGKS
Sbjct: 64 EYLSQGLRTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGVWGGKGQGKS 123
Query: 174 FQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLD 221
FQCELVFAKMGIN GNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLD
Sbjct: 124 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLD 183
Query: 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 281
AGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLY
Sbjct: 184 AGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLY 243
Query: 282 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 341
APLIRDGRMEKFYWAPTR+DRIGVC GIF++D +PKEDIVKLVDTFPGQSIDFFGALRAR
Sbjct: 244 APLIRDGRMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDFFGALRAR 303
Query: 342 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 401
VYDDEVRKW+S VG++ IGK+LVNS+EGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQ
Sbjct: 304 VYDDEVRKWVSGVGVDSIGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQ 363
Query: 402 LADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCN 461
LADKYLSEA+LG+AN D+I G+FYG+AAQQVKVPV EGCTDP AAN+DPTARSDDGSC
Sbjct: 364 LADKYLSEASLGEANQDSIDRGTFYGQAAQQVKVPVAEGCTDPNAANFDPTARSDDGSCT 423
Query: 462 Y 462
Y
Sbjct: 424 Y 424
>gi|407911670|gb|AFU50383.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform b [Ipomoea batatas]
Length = 484
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/484 (75%), Positives = 410/484 (84%), Gaps = 22/484 (4%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS------KVSQQRIL--- 51
MAA VST+GAVN +L L +N S S VPSS F GK LKK S K+S R +
Sbjct: 1 MAATVSTIGAVNKSL-LSLNNGSVGSSVPSSGFFGKGLKKTSGQRVAMPKISNSRQMRVA 59
Query: 52 -SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVM 110
E DE+KQT+QDRW GL DISDDQQDITRGKG+VD+LFQAPM +GTH+AV+
Sbjct: 60 AEAPEAAEPEIDEQKQTNQDRWKGLVEDISDDQQDITRGKGLVDSLFQAPMGTGTHHAVL 119
Query: 111 SSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQ 170
SSY+YISQGLR+Y++DNTLDG YIAPAFMDK+VVHITKNFL LPN+K+PLILG+WGGKGQ
Sbjct: 120 SSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQ 179
Query: 171 GKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 219
GKSFQCELVF KMGIN GNAGEPAKLIRQRYREAA+II+KG MC LFIND
Sbjct: 180 GKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCVLFIND 239
Query: 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 279
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFST
Sbjct: 240 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST 299
Query: 280 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 339
LYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD VP E +VKLVDTFPGQSIDFFGALR
Sbjct: 300 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALR 359
Query: 340 ARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 399
ARVYDDEVRK+I+ +G++ + +RL+NS++GPP F+QPKMT++KLL+YG MLVQEQENVKR
Sbjct: 360 ARVYDDEVRKFIASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYMLVQEQENVKR 419
Query: 400 VQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGS 459
VQLADKYL EAALGDAN+DAIKNG+FYG+ AQ + VPEGCTDP A+N+DPTARSDDG+
Sbjct: 420 VQLADKYLKEAALGDANEDAIKNGNFYGQGAQSGNLKVPEGCTDPQASNFDPTARSDDGT 479
Query: 460 CNYQ 463
C YQ
Sbjct: 480 CTYQ 483
>gi|116787538|gb|ABK24548.1| unknown [Picea sitchensis]
Length = 480
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/477 (73%), Positives = 401/477 (84%), Gaps = 13/477 (2%)
Query: 1 MAAVVSTVGA--VNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVV 58
MA + VG+ V++ LPL +S VPS+ F G LKK S S + FKVV
Sbjct: 1 MATAAAAVGSITVSSNLPLSSGQASILKTVPSTGFFGCGLKKTSFNASHTFTKANHFKVV 60
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+E DE KQT +D+W GLA+D SDDQ DI RGKG VD+LFQAPM SGTH VMS+YDYIS
Sbjct: 61 AEIDEGKQTDKDKWKGLAFDESDDQMDIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYIST 120
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
R Y DNT+DG YIAP+FMDK++VHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 121 AQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCEL 180
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAK+GIN G+AGEPAKL+R+RYREA+DI+KKGKMC LFINDLDAGAGRM
Sbjct: 181 VFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRM 240
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
G TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRD
Sbjct: 241 GSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRD 300
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTR+DRIGVC GIFR DNV +D+V+LVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 301 GRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEV 360
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKW++ GI+ IGK+L+NSKEGPPTFE+P MT++KLLEYG MLV EQ+NVKRVQLADKY+
Sbjct: 361 RKWVAGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYM 420
Query: 408 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
SEAALGDAN+D+IK G+FYG+AAQ V +PVPEGCTDP AANYDPTARSD+GSC Y+F
Sbjct: 421 SEAALGDANEDSIKRGTFYGQAAQHVNLPVPEGCTDPRAANYDPTARSDNGSCEYEF 477
>gi|407911664|gb|AFU50380.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform [Ipomoea batatas]
gi|407911672|gb|AFU50384.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform c [Ipomoea batatas]
Length = 484
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/484 (75%), Positives = 409/484 (84%), Gaps = 22/484 (4%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS------KVSQQRIL--- 51
MAA VST+GAVN +L L +N S S VPSS F GK LKK K+S R +
Sbjct: 1 MAATVSTIGAVNKSL-LSLNNGSVGSSVPSSGFFGKGLKKTGGHRVAMPKISNSRQMRVA 59
Query: 52 -SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVM 110
E DE+KQT+QDRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+
Sbjct: 60 AEAPEAAEPEIDEQKQTNQDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVL 119
Query: 111 SSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQ 170
SSY+YISQGLR+Y++DNTLDG YIAPAFMDK+VVHITKNFL LPN+K+PLILG+WGGKGQ
Sbjct: 120 SSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQ 179
Query: 171 GKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 219
GKSFQCELVF KMGIN GNAGEPAKLIRQRYREAA+II+KG MC LFIND
Sbjct: 180 GKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCVLFIND 239
Query: 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 279
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFST
Sbjct: 240 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST 299
Query: 280 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 339
LYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD VP E +VKLVDTFPGQSIDFFGALR
Sbjct: 300 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALR 359
Query: 340 ARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 399
ARVYDDEVRK+I+ +G++ + +RL+NS++GPP F+QPKMT++KLL+YG MLVQEQENVKR
Sbjct: 360 ARVYDDEVRKFIASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYMLVQEQENVKR 419
Query: 400 VQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGS 459
VQLADKYL EAALGDAN+DAIKNG+FYG+ AQ + VPEGCTDP A+N+DPTARSDDG+
Sbjct: 420 VQLADKYLKEAALGDANEDAIKNGNFYGQGAQSGNLKVPEGCTDPQASNFDPTARSDDGT 479
Query: 460 CNYQ 463
C YQ
Sbjct: 480 CTYQ 483
>gi|12620881|gb|AAG61120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Gossypium hirsutum]
Length = 438
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/439 (81%), Positives = 388/439 (88%), Gaps = 15/439 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQ-RILSKSFKVVS 59
MAA VST+GAVN A PL +NGS + PSS F+G SLKKVS++ + + SFK+V+
Sbjct: 1 MAAAVSTIGAVNRA-PLSLNGSGAGASAPSSAFMGNSLKKVSARFNNNGKAPVGSFKIVA 59
Query: 60 --EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYIS 117
E DE+ QT QDRW GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+YIS
Sbjct: 60 AKEIDEDTQTDQDRWKGLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYIS 119
Query: 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 177
QGLR Y LDN +DG YIAPAFMDK+VVHITKN++ LPN+KVPLILGIWGGKGQGKSFQCE
Sbjct: 120 QGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGGKGQGKSFQCE 179
Query: 178 LVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 226
LVFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR
Sbjct: 180 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 239
Query: 227 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 286
MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIR
Sbjct: 240 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 299
Query: 287 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 346
DGRMEKFYWAPTREDRIGVC+GIFRTDNVP +DIVKLVDTFPGQSIDFFGALRARVYDDE
Sbjct: 300 DGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDE 359
Query: 347 VRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
VRKWI EVG+ +GK+LVNS+EGPP+FEQP MT++KLLEYG MLV EQENVKRVQLADKY
Sbjct: 360 VRKWIGEVGVNSVGKKLVNSREGPPSFEQPTMTIEKLLEYGNMLVAEQENVKRVQLADKY 419
Query: 407 LSEAALGDANDDAIKNGSF 425
LSEAALG+ANDDAIK G+F
Sbjct: 420 LSEAALGNANDDAIKRGAF 438
>gi|115334975|gb|ABI94075.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/439 (81%), Positives = 391/439 (89%), Gaps = 14/439 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N+A PL +NGS + S VP+S F G SLKKV+S+ ++ S SFKVV+
Sbjct: 1 MAAAVSTVGAINSA-PLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +D+W GLAYD SDDQQDITRGKG+VD+LFQAP +GTHYAVMSSYDYIS G
Sbjct: 60 EIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAPSGTGTHYAVMSSYDYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y L+N++DG YIAPAFMDK+VVHITKNF++LPN+K+PLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRTY-LENSMDGFYIAPAFMDKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGI-----------NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
FAKMGI +GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFR+DNV +++KLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRSDNVADGELIKLVDTFPGQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
KWIS +G++ IGK LVNSK GPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYLS
Sbjct: 359 KWISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLS 418
Query: 409 EAALGDANDDAIKNGSFYG 427
EAALGDANDDAIK GSFYG
Sbjct: 419 EAALGDANDDAIKRGSFYG 437
>gi|115334979|gb|ABI94077.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/439 (80%), Positives = 388/439 (88%), Gaps = 14/439 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVG VN+A PL +NGS + S VP+S F G SLKKV+S+ ++ S SFKVV+
Sbjct: 1 MAAAVSTVGTVNSA-PLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +D+W GLAYD SDDQQDITRGKG+VD+LFQAP +GTHYAVMSSYDYIS G
Sbjct: 60 EIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAPSGTGTHYAVMSSYDYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y L+N++DG YIAP FM K+VVHITKNF++LPN+K+PLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRTY-LENSMDGFYIAPVFMGKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGI-----------NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
FAKMGI +GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFR+DNV +++KLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRSDNVADNELIKLVDTFPGQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
KWIS +G++ IGK LVNSK GPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYLS
Sbjct: 359 KWISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLS 418
Query: 409 EAALGDANDDAIKNGSFYG 427
EAALGDANDDAIK GSFYG
Sbjct: 419 EAALGDANDDAIKRGSFYG 437
>gi|170129|gb|AAA34038.1| rubisco activase precursor [Spinacia oleracea]
Length = 472
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/475 (73%), Positives = 396/475 (83%), Gaps = 14/475 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VSTVGA A PL +NGSS + VP+S FLG SLKK ++ + S V +
Sbjct: 1 MATAVSTVGAATRA-PLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+EEK T D+WA LA D SDDQ DI RGKGMVD+LFQAP ++GTH + SS++Y SQGL
Sbjct: 60 ENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 117
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R+Y +DN L LYIAPAFMDK+VVHITKNFLNLPN+K+PLILG+WGGKGQGKSFQCELVF
Sbjct: 118 RKYDIDNMLGDLYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 177
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AK+GIN GNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGG
Sbjct: 178 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATL+NIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLLNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 297
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTREDRIGVC+GIF+TD VP E +VKLVD FPGQSIDFFGALRARVYDDEVRK
Sbjct: 298 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYDDEVRK 357
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
W++ VG++ +GK+LVNSK+GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S
Sbjct: 358 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
Query: 410 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
AALGDAN DAI G+F+GKAAQQV +PV +GCTDP A NYDPTARSDDGSC Y
Sbjct: 418 AALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472
>gi|32481061|gb|AAP83927.1| Rubisco activase alpha form precursor [Deschampsia antarctica]
Length = 465
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/481 (74%), Positives = 396/481 (82%), Gaps = 36/481 (7%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFK---- 56
AA STVGA + P+S FLG LKK V+S V+ KSFK
Sbjct: 3 AAFSSTVGAP--------------ASTPTS-FLGNKLKKQVTSAVNYH---GKSFKANRF 44
Query: 57 --VVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYD 114
+ + DE KQT D+W GLAYDISDDQQDITRGKG+VD+LFQAPM GTH AV+SSY+
Sbjct: 45 TVMAKDIDEGKQTDGDKWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAVLSSYE 104
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+SQGL++Y DNT+ G YIAPAFMDK+VVH++KNF+ LPN+K+PLILGIWGGKGQGKSF
Sbjct: 105 YVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 164
Query: 175 QCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223
QCELVFAKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAG
Sbjct: 165 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAG 224
Query: 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283
AGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+EENPRVPI VTGNDFSTLYAP
Sbjct: 225 AGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIXVTGNDFSTLYAP 284
Query: 284 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 343
LI DGRMEKFYWAPTREDRIGVC GIF+TDNV E +VK+VDTFPGQSIDFFGALRARVY
Sbjct: 285 LIPDGRMEKFYWAPTREDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 344
Query: 344 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 403
DDEVRKW+S GIE IGKRLVNS++GP TFEQPKMT++KLLEYG MLVQEQ+NVKRVQLA
Sbjct: 345 DDEVRKWVSSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 404
Query: 404 DKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQ 463
D Y+S+AALGDAN DA+K GSFYGK AQQ +PVPEGCTD A N+DPTARSDDGSC Y
Sbjct: 405 DTYMSQAALGDANKDAMKTGSFYGKGAQQGTLPVPEGCTDRDAKNFDPTARSDDGSCLYT 464
Query: 464 F 464
F
Sbjct: 465 F 465
>gi|12643998|sp|P10871.2|RCA_SPIOL RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|4261546|gb|AAD13840.1|S45033_1 ribulosebisphosphate carboxylase/oxygenase activase [Spinacia
oleracea]
Length = 472
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/475 (73%), Positives = 394/475 (82%), Gaps = 14/475 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VSTVGA A PL +NGSS + VP+S FLG SLKK ++ + S V +
Sbjct: 1 MATAVSTVGAATRA-PLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+EEK T D+WA LA D SDDQ DI RGKGMVD+LFQAP ++GTH + SS++Y SQGL
Sbjct: 60 ENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 117
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R+Y +DN L YIAPAFMDK+VVHITKNFLNLPN+K+PLILG+WGGKGQGKSFQCELVF
Sbjct: 118 RKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 177
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AK+GIN GNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGG
Sbjct: 178 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 297
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTREDRIGVC+GIF+TD VP E +VKLVD FPGQSIDFFGALRARVY DEVRK
Sbjct: 298 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRK 357
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
W++ VG++ +GK+LVNSK+GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S
Sbjct: 358 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
Query: 410 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
AALGDAN DAI G+F+GKAAQQV +PV +GCTDP A NYDPTARSDDGSC Y
Sbjct: 418 AALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472
>gi|12643756|sp|Q40073.1|RCAA_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
A, chloroplastic; Short=RA A; Short=RuBisCO activase A;
Flags: Precursor
gi|167097|gb|AAA63164.1| ribulose 1,5-bisphosphate carboxylase activase isoform 2 [Hordeum
vulgare subsp. vulgare]
Length = 464
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/446 (77%), Positives = 386/446 (86%), Gaps = 14/446 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQ 198
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 318
MYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 319 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 378
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 379 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVP 438
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYGK AQQ +PVP
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVP 438
Query: 439 EGCTDPAAANYDPTARSDDGSCNYQF 464
EGCTD A NYDPTARSDDGSC Y F
Sbjct: 439 EGCTDQNAKNYDPTARSDDGSCLYTF 464
>gi|16471|emb|CAA32429.1| unnamed protein product [Arabidopsis thaliana]
Length = 473
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/476 (74%), Positives = 396/476 (83%), Gaps = 15/476 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILG GGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGSRGGKGQGKSFQCELV 178
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
AKMGIN GNAGE KLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEVRKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLY PLI DG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYGPLILDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKF PTREDRIGV GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFLTGPTREDRIGVW-GIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 357
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 358 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 417
Query: 409 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
+AALGDAN DAI G+FYGK A +V +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 418 QAALGDANADAIGRGTFYGKGAHEVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 473
>gi|224101023|ref|XP_002312110.1| predicted protein [Populus trichocarpa]
gi|222851930|gb|EEE89477.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/439 (79%), Positives = 390/439 (88%), Gaps = 15/439 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I S SFKVV+
Sbjct: 1 MAATISTVGAVNRA-PLALNGSGAGSTVPTSAFFGNSLKKVSSSRFTNSKISSGSFKVVA 59
Query: 60 E-YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E YDEEKQT +DRW GL D+SDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+SQ
Sbjct: 60 EEYDEEKQTEKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPVLSSYEYLSQ 119
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLR Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRTYNLDNMMDGFYIAPAFMDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGR 226
VFAKMGI+ GNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGR 239
Query: 227 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 286
+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVP+IVTGNDFSTLYAPLIR
Sbjct: 240 LGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPVIVTGNDFSTLYAPLIR 299
Query: 287 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 346
DGRMEKFYWAPTREDRIGVC GIF+TDNVP++DIVKLVDTFPGQSIDFFGALRARVYDDE
Sbjct: 300 DGRMEKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDE 359
Query: 347 VRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
VRKW+S VG+E IGK+LVNS+EGPPTFEQP MT++KL EYG MLV+EQENVKRVQLADKY
Sbjct: 360 VRKWVSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKY 419
Query: 407 LSEAALGDANDDAIKNGSF 425
LS+AALG+AN DAI+ G+F
Sbjct: 420 LSDAALGEANQDAIERGTF 438
>gi|293331415|ref|NP_001168488.1| uncharacterized protein LOC100382265 [Zea mays]
gi|223948617|gb|ACN28392.1| unknown [Zea mays]
gi|413920135|gb|AFW60067.1| hypothetical protein ZEAMMB73_533261 [Zea mays]
Length = 463
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/409 (83%), Positives = 364/409 (88%), Gaps = 15/409 (3%)
Query: 65 KQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYS 124
K+T QDRW GLA D SDDQQDITRGKG VD LFQAPM GTH AV+SSYDYISQGLR YS
Sbjct: 58 KETEQDRWRGLALDTSDDQQDITRGKGRVDPLFQAPMGDGTHVAVLSSYDYISQGLRHYS 117
Query: 125 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184
LDN +DG YIAPAFMDK+VVHI KNF+ LPN+KVPLILGIWGGKGQGKSFQCELV AKMG
Sbjct: 118 LDNMMDGYYIAPAFMDKLVVHIAKNFMPLPNIKVPLILGIWGGKGQGKSFQCELVLAKMG 177
Query: 185 IN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 233
IN GNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGAGRMGGTTQY
Sbjct: 178 INPIVMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCVLFINDLDAGAGRMGGTTQY 237
Query: 234 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 293
TVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRM+KF
Sbjct: 238 TVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKF 297
Query: 294 YWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 353
YWAPTREDR+GVC GIFR+D VP ED+V+LVD FPGQSIDFFGALRARVYDDEVR+W++E
Sbjct: 298 YWAPTREDRVGVCKGIFRSDGVPDEDVVRLVDAFPGQSIDFFGALRARVYDDEVRRWVAE 357
Query: 354 VGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 413
G+E I +RLVNSKEGPPTFEQP+MTLDKL+EYGRMLV+EQENVKRVQLADKYLSEAALG
Sbjct: 358 TGVENIARRLVNSKEGPPTFEQPRMTLDKLMEYGRMLVEEQENVKRVQLADKYLSEAALG 417
Query: 414 DANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 462
DANDD YGKAAQ V+VPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct: 418 DANDD----DDLYGKAAQHVRVPVPEGCTDPKAGNFDPTARSDDGSCVY 462
>gi|255635315|gb|ACU18011.1| unknown [Glycine max]
gi|290766487|gb|ADD60246.1| beta-form rubisco activase [Glycine max]
gi|290766491|gb|ADD60248.1| beta-form rubisco activase [Glycine max]
Length = 443
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/443 (79%), Positives = 391/443 (88%), Gaps = 19/443 (4%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN AL L +NGS + PSS F G SLKKV +S+V ++ SFK+V+
Sbjct: 1 MAASVSTVGAVNRAL-LNLNGSGAGASAPSSAFFGTSLKKVIASRVPNSKVSGGSFKIVA 59
Query: 60 -----EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYD 114
E +E +QT +DRW GLAYDISDDQQDITRGKG+VD+LFQAP ++GTHYAVMSSY+
Sbjct: 60 VEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYE 119
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+S GLRQY LDN +DG YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 120 YLSTGLRQY-LDNKMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSF 178
Query: 175 QCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223
QCELVFAKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAG
Sbjct: 179 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAG 238
Query: 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAP
Sbjct: 239 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 298
Query: 284 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 343
LIRDGRMEKFYWAPTREDRIGVC+GIFRTD +P++DIVKLVDTFPGQSIDFFGALRARVY
Sbjct: 299 LIRDGRMEKFYWAPTREDRIGVCTGIFRTDGIPEQDIVKLVDTFPGQSIDFFGALRARVY 358
Query: 344 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 403
DDEVRKWIS VG++ +GK+LVNSK+GPPTFEQPKMTL+KLL YG MLVQEQENVKRVQLA
Sbjct: 359 DDEVRKWISGVGVDSVGKKLVNSKDGPPTFEQPKMTLEKLLLYGNMLVQEQENVKRVQLA 418
Query: 404 DKYLSEAALGDANDDAIKNGSFY 426
DKYL+EAALG+AN+DAI+ G+F+
Sbjct: 419 DKYLNEAALGNANEDAIQRGTFF 441
>gi|358249078|ref|NP_001240245.1| ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
gi|290766485|gb|ADD60245.1| rubisco activase [Glycine max]
Length = 443
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/443 (79%), Positives = 390/443 (88%), Gaps = 19/443 (4%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN AL L +NGS PSS F G SLKKV S+V +I S SFK+V+
Sbjct: 1 MAASVSTVGAVNRAL-LNLNGSGPGVSAPSSSFFGSSLKKVIGSRVPNTKISSGSFKIVA 59
Query: 60 -----EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYD 114
E +E +QT +DRW GLAYDISDDQQDITRGKG+VD+LFQAP ++GTHYAVMSSY+
Sbjct: 60 VEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYE 119
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+S GLRQY LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 120 YLSTGLRQY-LDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 178
Query: 175 QCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223
QCELVFAKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAG
Sbjct: 179 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCALFINDLDAG 238
Query: 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAP
Sbjct: 239 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 298
Query: 284 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 343
LIRDGRMEKFYWAPTR+DRIGVC+GIFRTD++P++D+VK+VDTFPGQSIDFFGALRARVY
Sbjct: 299 LIRDGRMEKFYWAPTRDDRIGVCTGIFRTDSIPEQDVVKIVDTFPGQSIDFFGALRARVY 358
Query: 344 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 403
DDEVRKWIS VG++ IGK+LVNSK+GPPTFEQPKMTL+KLL YG MLVQEQENVKRVQLA
Sbjct: 359 DDEVRKWISGVGVDGIGKKLVNSKDGPPTFEQPKMTLEKLLTYGNMLVQEQENVKRVQLA 418
Query: 404 DKYLSEAALGDANDDAIKNGSFY 426
DKYL+EAALG+AN+DAI G+F+
Sbjct: 419 DKYLNEAALGNANEDAINRGTFF 441
>gi|3914605|sp|Q40281.1|RCA_MALDO RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|415852|emb|CAA79857.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Malus x
domestica]
Length = 437
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/438 (79%), Positives = 387/438 (88%), Gaps = 12/438 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+G+VN A P +NGSS + VPSS FLG SLKKV+S+ + ++ S S ++V+
Sbjct: 1 MATAVSTIGSVNRAPP-NLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVAS 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE+KQT +DRW GLA+D SDDQQDITRGKG VD+LFQAP SGTH+A+MSSY+YIS GL
Sbjct: 60 VDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+ DN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AKM I+ GNAGEPAKLIRQRYREAADII+KGKMC LFINDLDAGAGR+GG
Sbjct: 180 AKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGG 239
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTREDRIGVC GIFR+DNV KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
WI+ VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 410 AALGDANDDAIKNGSFYG 427
AALGDAN DA+ G+FYG
Sbjct: 420 AALGDANSDAMNTGTFYG 437
>gi|427542680|gb|AFY63117.1| alpha-form Rubisco activase [Zea mays]
Length = 463
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/409 (83%), Positives = 363/409 (88%), Gaps = 15/409 (3%)
Query: 65 KQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYS 124
K+T QDRW GLA D SDDQQDITRGKG VD LFQAPM GTH AV+SSYDYISQGLR YS
Sbjct: 58 KETEQDRWRGLALDTSDDQQDITRGKGRVDPLFQAPMGDGTHVAVLSSYDYISQGLRHYS 117
Query: 125 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184
LDN +DG YIAPAFMDK+VVHI KNF+ LPN+KVPLILGIWGGKGQGKSFQCELV AKMG
Sbjct: 118 LDNMMDGYYIAPAFMDKLVVHIAKNFMPLPNIKVPLILGIWGGKGQGKSFQCELVLAKMG 177
Query: 185 IN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 233
IN GNAGEPAKLIRQRYREAAD+IKKGKMC LFINDL AGAGRMGGTTQY
Sbjct: 178 INPIVMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCVLFINDLYAGAGRMGGTTQY 237
Query: 234 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 293
TVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRM+KF
Sbjct: 238 TVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKF 297
Query: 294 YWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 353
YWAPTREDR+GVC GIFR+D VP ED+V+LVD FPGQSIDFFGALRARVYDDEVR+W++E
Sbjct: 298 YWAPTREDRVGVCKGIFRSDGVPDEDVVRLVDAFPGQSIDFFGALRARVYDDEVRRWVAE 357
Query: 354 VGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 413
G+E I +RLVNSKEGPPTFEQP+MTLDKL+EYGRMLV+EQENVKRVQLADKYLSEAALG
Sbjct: 358 TGVENIARRLVNSKEGPPTFEQPRMTLDKLMEYGRMLVEEQENVKRVQLADKYLSEAALG 417
Query: 414 DANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 462
DANDD YGKAAQ V+VPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct: 418 DANDD----DDLYGKAAQHVRVPVPEGCTDPKAGNFDPTARSDDGSCVY 462
>gi|224140291|ref|XP_002323516.1| predicted protein [Populus trichocarpa]
gi|222868146|gb|EEF05277.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/486 (74%), Positives = 397/486 (81%), Gaps = 39/486 (8%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA VSTVGA N L L + G+ P+S F SLK V SK++ QR+L+++ K+ +
Sbjct: 1 MAASVSTVGAGNRGL-LNLKGAGSGPSWPTSAFFDNSLKTVLGSKITNQRLLTRNLKLAA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
EYD+EKQ S+D+W GLA+D SDDQQDITRGKGMVD+LFQAPM +GTHYAVMSSYDY S+G
Sbjct: 60 EYDKEKQPSKDKWKGLAFDTSDDQQDITRGKGMVDSLFQAPMGTGTHYAVMSSYDYTSKG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY LDN +DG YIA +FMDK+VVHITKNFL LPN+K KGQGKSFQCELV
Sbjct: 120 LRQYKLDNNMDGFYIASSFMDKLVVHITKNFLQLPNIKA--------SKGQGKSFQCELV 171
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 227
FAKMGIN GNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR
Sbjct: 172 FAKMGINPVVMSAGELESGNAGEPAKLIRQRYREAADIIKKRGKMCCLFINDLDAGAGRF 231
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 232 GGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 291
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTREDRIGVC+GIF +DNVP+EDIVKLV+TF GQSIDFFGALRAR YDDEV
Sbjct: 292 GRMEKFYWAPTREDRIGVCTGIFGSDNVPREDIVKLVNTFHGQSIDFFGALRARAYDDEV 351
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKWIS VG+E +GKRLVNSKEGPP EQPKMTL+KLLEYG MLV EQENVKRV+L+DKYL
Sbjct: 352 RKWISGVGVENVGKRLVNSKEGPPILEQPKMTLEKLLEYGNMLVLEQENVKRVRLSDKYL 411
Query: 408 SEAALGDANDDAIKNGSFY-------------GKAAQQVKVPVPEGCTDPAAANYDPTAR 454
EAALGDAN+DA+KNGSFY KAAQQV +PVPE CT+ A TAR
Sbjct: 412 KEAALGDANEDAMKNGSFYEEIIKLLYNFLDTSKAAQQVNLPVPEDCTNSLAE----TAR 467
Query: 455 SDDGSC 460
SDDGSC
Sbjct: 468 SDDGSC 473
>gi|13430338|gb|AAK25801.1|AF338240_1 rubisco activase [Zantedeschia aethiopica]
Length = 435
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/435 (79%), Positives = 381/435 (87%), Gaps = 13/435 (2%)
Query: 5 VSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS-EYDE 63
VS+VGAVN P ++GS + V S FLG SLK V+ + R + + KV++ + DE
Sbjct: 2 VSSVGAVNRVRP-SLHGSGSGASVTRSGFLGTSLKTVNPSLGHGRTSTGTLKVMAADLDE 60
Query: 64 EKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQY 123
KQT DRWAGL D SDDQQDITRGKGMVD+LFQAPM GTH V+SSY+YIS GLR +
Sbjct: 61 SKQTKTDRWAGLYTDTSDDQQDITRGKGMVDSLFQAPMGDGTHNPVLSSYEYISTGLRSF 120
Query: 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
+LDNT++GLYIAPAFMDK+VVHITKNF+NLPN+K+PLILGIWGGKGQGKSFQCELVFAKM
Sbjct: 121 NLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPLILGIWGGKGQGKSFQCELVFAKM 180
Query: 184 GIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 232
GIN GNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGRMGGTTQ
Sbjct: 181 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQ 240
Query: 233 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
YTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct: 241 YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLIRDGRMEK 300
Query: 293 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 352
FYWAPTR+DR+GVC+GIFR+DNVPKED++KLVDTFPGQSIDFFGALRARVYDDEVRKWI+
Sbjct: 301 FYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWIA 360
Query: 353 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAAL 412
E+G++ +GKRLVNS EGPPTF QPKMTLDKLLEYG MLVQEQENVKRVQLADKYLSEAAL
Sbjct: 361 EIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSEAAL 420
Query: 413 GDANDDAIKNGSFYG 427
GDAN DAIK GSFYG
Sbjct: 421 GDANQDAIKTGSFYG 435
>gi|10720249|sp|O98997.2|RCA_PHAAU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8954287|gb|AAD20019.2| rubisco activase [Vigna radiata]
Length = 439
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/441 (78%), Positives = 388/441 (87%), Gaps = 18/441 (4%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN A+ L +NGS + P+S F G SLKK V+S+V ++ + SFK+V+
Sbjct: 1 MAASVSTVGAVNRAI-LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E +E +QT++DRW GLAYDISDDQQDITRGKGMVD LFQAPM++GTHYAVMSSY+Y+
Sbjct: 60 AEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GLRQ LDN DG YIAPAF+DK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 STGLRQ--LDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQC 177
Query: 177 ELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
ELVFAKMGIN GNAGEPAKLIRQRYREAAD+I KGKMC LFINDLDAGAG
Sbjct: 178 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAG 237
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLI
Sbjct: 238 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLI 297
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRMEKFYWAPTR+DR+GVC GIFRTD VP+EDI KLVDTFPGQSIDFFGALRARVYDD
Sbjct: 298 RDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDD 357
Query: 346 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
EVRKWIS VG++ GK+LVNSKEGPPTF+QPKM+LDKLL+YG MLVQEQENVKRVQLADK
Sbjct: 358 EVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADK 417
Query: 406 YLSEAALGDANDDAIKNGSFY 426
YL+EAALG+AN+DAIK+GSF+
Sbjct: 418 YLNEAALGNANEDAIKSGSFF 438
>gi|118489408|gb|ABK96507.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 461
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/436 (79%), Positives = 388/436 (88%), Gaps = 15/436 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I S SFKVV+
Sbjct: 1 MAATISTVGAVNRA-PLALNGSGAGSTVPTSAFFGNSLKKVSSSRFTNSKISSGSFKVVA 59
Query: 60 E-YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E YDEEKQT +DRW GL D+SDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+SQ
Sbjct: 60 EEYDEEKQTEKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPVLSSYEYLSQ 119
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLR Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRTYNLDNMMDGYYIAPAFMDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGR 226
VFAKMGI+ GNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGR 239
Query: 227 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 286
+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIR
Sbjct: 240 LGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIR 299
Query: 287 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 346
DGRMEKFYWAPTR+DRIGVC GIF+TDNVP++DIVKLVDTFPGQSIDFFGALRARVYDDE
Sbjct: 300 DGRMEKFYWAPTRDDRIGVCIGIFKTDNVPQDDIVKLVDTFPGQSIDFFGALRARVYDDE 359
Query: 347 VRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
VRKW+S VG+E IGK+LVNS+EGPPTFEQP MT++KL EYG MLV+EQENVKRVQLADKY
Sbjct: 360 VRKWVSGVGVESIGKKLVNSREGPPTFEQPAMTVEKLFEYGNMLVKEQENVKRVQLADKY 419
Query: 407 LSEAALGDANDDAIKN 422
LS+AALG+AN DAI++
Sbjct: 420 LSDAALGEANQDAIES 435
>gi|449450762|ref|XP_004143131.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|449496654|ref|XP_004160190.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|239837354|gb|ACS29559.1| chloroplast rubisco activase [Cucumis sativus]
Length = 611
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/472 (73%), Positives = 387/472 (81%), Gaps = 15/472 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VST+GAVN +N S+ LVP+S FLG LK VSS+ + ++++ +FK+V+E
Sbjct: 1 MAATVSTIGAVNRT---TLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAE 56
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DEEKQT +D+W GLA+D SDDQQDITRGKG+ D LFQAPM +GTH AV+SSY+YIS GL
Sbjct: 57 QDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGL 116
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R YS DN +DG YIAPAFMDK+ VHI KNFL LPN+KVPLILG+WGGKGQGKSFQCELVF
Sbjct: 117 RDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVF 176
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR+GG
Sbjct: 177 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGG 236
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 237 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 296
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
M+KFYWAPTREDRIG+C+GIFRTD VP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 297 MDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 356
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
W VG+ERIG+ LVNSKE PPTF+QPKMT++KLLEYG MLV EQENVKRV+LADKYL+E
Sbjct: 357 WAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLADKYLNE 416
Query: 410 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCN 461
AALGDAN+D ++ + A V + T A D + GS N
Sbjct: 417 AALGDANEDDVQFKTSQEAALDVANEDVVQSETSEEVALEDANEDVESGSSN 468
>gi|356569334|ref|XP_003552857.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 431
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/437 (79%), Positives = 385/437 (88%), Gaps = 19/437 (4%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VSTVGAVN AL L +NGS + PSS F G SLKKV + RI++ K E
Sbjct: 1 MAASVSTVGAVNRAL-LNLNGSGAGASAPSSAFFGTSLKKVIA----SRIVAVEEK--KE 53
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+E +QT +DRW GLAYDISDDQQDITRGKG+VD+LFQAP ++GTHYAVMSSY+Y+S GL
Sbjct: 54 IEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYEYLSTGL 113
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY LDN +DG YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 114 RQY-LDNKMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 172
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGAGR+GG
Sbjct: 173 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAGRLGG 232
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 233 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 292
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTREDRIGVC+GIFRTD +P++DIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 293 MEKFYWAPTREDRIGVCTGIFRTDGIPEQDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 352
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
WIS VG++ +GK+LVNSK+GPPTFEQPKMTL+KLL YG MLVQEQENVKRVQLADKYL+E
Sbjct: 353 WISGVGVDSVGKKLVNSKDGPPTFEQPKMTLEKLLLYGNMLVQEQENVKRVQLADKYLNE 412
Query: 410 AALGDANDDAIKNGSFY 426
AALG+AN+DAI+ G+F+
Sbjct: 413 AALGNANEDAIQRGTFF 429
>gi|12643757|sp|Q40460.1|RCA1_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
Flags: Precursor
gi|1006835|gb|AAA78277.1| rubisco activase precursor [Nicotiana tabacum]
Length = 442
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/441 (78%), Positives = 380/441 (86%), Gaps = 16/441 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MA VST+GAVN PL +N S + VPS+ F GK+LKKV K VS ++ +KS ++V+
Sbjct: 1 MATSVSTIGAVNKT-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E D +KQT DRW GL D SDDQQDITRGKGMVD+LFQAP +GTH+AV+ SY+Y+
Sbjct: 60 EQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYV 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
SQGLRQY+LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 SQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 179
Query: 177 ELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
ELVF KMGIN GNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 239
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 299
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRMEKFYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDD 359
Query: 346 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
EVRKW+S GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADK
Sbjct: 360 EVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 419
Query: 406 YLSEAALGDANDDAIKNGSFY 426
YL EAALGDAN DAI NGSF+
Sbjct: 420 YLKEAALGDANADAINNGSFF 440
>gi|242072105|ref|XP_002451329.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
gi|241937172|gb|EES10317.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
Length = 473
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/477 (73%), Positives = 391/477 (81%), Gaps = 31/477 (6%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
+A V+T A N+ L N +++ L SS+ KK + + I+ ++ V+
Sbjct: 12 VAVPVTTSTAANSFL--GSNNNNKQKLTVSSI----RKKKQHQQGGRGLIIIRAMAAVNK 65
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E DE KQT QDRW GLAYD SDDQQDITRGKGM+D+LFQAPM GTH AV+SSYDYISQ
Sbjct: 66 QEVDETKQTEQDRWRGLAYDTSDDQQDITRGKGMIDSLFQAPMGDGTHVAVLSSYDYISQ 125
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY NT+DG YIAPAFMDK+V+HI KNF+ LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 126 GLRQY---NTMDGYYIAPAFMDKLVLHIAKNFMTLPNIKVPLILGIWGGKGQGKSFQCEL 182
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAKMGIN GNAGEPAKLIRQRYREAAD+I KGKM CLFINDLDAGAGRM
Sbjct: 183 VFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADLISKGKMSCLFINDLDAGAGRM 242
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY++ +NPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 243 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYSKVDNPRVPIIVTGNDFSTLYAPLIRD 302
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRM+KFYWAPTR+DRIGVC GIFRTD VP E +V+LVD FPGQSIDFFGALRARVYDDEV
Sbjct: 303 GRMDKFYWAPTRDDRIGVCKGIFRTDGVPDEHVVQLVDAFPGQSIDFFGALRARVYDDEV 362
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
R+W++E G+E I +RLVNSKE PPTFEQP+MTLDKL+EYGRML +EQENVKRVQLADKYL
Sbjct: 363 RRWVAETGVENIARRLVNSKEAPPTFEQPRMTLDKLMEYGRMLEEEQENVKRVQLADKYL 422
Query: 408 SEAALGDANDDAIKNGSFYGKAAQQVK--VPVPEGCTDPAAANYDPTARSDDGSCNY 462
+EAALGDAND FYGKAAQQV VPVPEGCTDP A N+DP ARSDDGSC Y
Sbjct: 423 TEAALGDAND-------FYGKAAQQVHVPVPVPEGCTDPRAGNFDPVARSDDGSCVY 472
>gi|100614|pir||B23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A long form
precursor - barley (fragment)
gi|167089|gb|AAA62701.1| ribulose 1,5-bisphosphate carboxylase activase, partial [Hordeum
vulgare subsp. vulgare]
Length = 426
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/424 (78%), Positives = 371/424 (87%), Gaps = 11/424 (2%)
Query: 52 SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMS 111
+ F V++ + +++ + D+W GLA DISDDQQDITRGKG+VD+LFQAP GTH AV+S
Sbjct: 3 ANRFTVMAAENIDEKRNTDKWKGLATDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 62
Query: 112 SYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQG 171
SY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KNF+ LPN+K+PLILGIWGGKGQG
Sbjct: 63 SYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQG 122
Query: 172 KSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 220
KSFQCELVFAKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDL
Sbjct: 123 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDL 182
Query: 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 280
DAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+ ENPRVPI+VTGNDFSTL
Sbjct: 183 DAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTL 242
Query: 281 YAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRA 340
YAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E +VK+VDTFPGQSIDFFGALRA
Sbjct: 243 YAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVCDESVVKIVDTFPGQSIDFFGALRA 302
Query: 341 RVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRV 400
RVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKMT++KLLEYG MLVQEQ+NVKRV
Sbjct: 303 RVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRV 362
Query: 401 QLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSC 460
QLAD Y+S+AALGDAN DA+K GSFYGK AQQ +PVPEGCTD A NYDPTARSDDGSC
Sbjct: 363 QLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSC 422
Query: 461 NYQF 464
Y F
Sbjct: 423 LYTF 426
>gi|158726716|gb|ABW80752.1| chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase
activase [Flaveria bidentis]
Length = 438
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/437 (79%), Positives = 377/437 (86%), Gaps = 20/437 (4%)
Query: 5 VSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFKVVS---E 60
+ +GA N PL SS + VPSS FLG SLKK V+S+ + +FK+ + E
Sbjct: 3 TAAIGATFNRTPL----SSGVAAVPSSSFLGTSLKKIVNSRHAVNNNKFSTFKIFAAEKE 58
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+E KQT +DRW GLAYD+SDDQQDITRGKGMVD+LFQAP +SGTH+AVMSSY+YIS GL
Sbjct: 59 IEETKQTDKDRWRGLAYDMSDDQQDITRGKGMVDSLFQAPQDSGTHFAVMSSYEYISTGL 118
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R Y LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILG+WGGKGQGKSFQCELVF
Sbjct: 119 RTY-LDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVF 177
Query: 181 AKMGI-----------NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AKMGI +GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG
Sbjct: 178 AKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 237
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 297
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTR+DRIGVC GIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 298 MEKFYWAPTRDDRIGVCIGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 357
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
WI EVG+E IGK+LVNS+EGPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLAD YL
Sbjct: 358 WIGEVGVETIGKKLVNSREGPPTFEQPKMTIDKLLEYGYMLVQEQENVKRVQLADTYLDS 417
Query: 410 AALGDANDDAIKNGSFY 426
AALGDAN DA++ G F+
Sbjct: 418 AALGDANKDAMETGKFF 434
>gi|312281705|dbj|BAJ33718.1| unnamed protein product [Thellungiella halophila]
Length = 437
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/439 (77%), Positives = 380/439 (86%), Gaps = 14/439 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS + + VP++ FLGK + S + S SFKVV+
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGAGAASVPATTFLGKKVVTTSRFAQSNKKSSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD+SDDQQDITRGKG+VD++FQAPM +GTH+AV+SSY+YISQG
Sbjct: 60 -VKEDKQTDGDRWKGLAYDMSDDQQDITRGKGLVDSVFQAPMGTGTHHAVLSSYEYISQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
AKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKINDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
K++ +G+E+IGKRLVNS+EGPP FEQP+MTL+KL+EYG MLV EQENVKRVQLAD+YL+
Sbjct: 359 KFVEGLGVEKIGKRLVNSREGPPVFEQPEMTLEKLMEYGNMLVMEQENVKRVQLADQYLN 418
Query: 409 EAALGDANDDAIKNGSFYG 427
EAALGDAN DAI G+FYG
Sbjct: 419 EAALGDANADAIDRGTFYG 437
>gi|30687995|ref|NP_850320.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|166835|gb|AAA20203.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|15450671|gb|AAK96607.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
gi|23397139|gb|AAN31853.1| unknown protein [Arabidopsis thaliana]
gi|330254621|gb|AEC09715.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 446
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/444 (76%), Positives = 379/444 (85%), Gaps = 14/444 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
AKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 409 EAALGDANDDAIKNGSFYGKAAQQ 432
+AALGDAN DAI G+FYGK ++
Sbjct: 419 QAALGDANADAIGRGTFYGKTEEK 442
>gi|30687999|ref|NP_850321.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|330254622|gb|AEC09716.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 441
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/440 (77%), Positives = 377/440 (85%), Gaps = 14/440 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
AKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 409 EAALGDANDDAIKNGSFYGK 428
+AALGDAN DAI G+FYGK
Sbjct: 419 QAALGDANADAIGRGTFYGK 438
>gi|169930138|gb|ACB05667.1| chloroplast rubisco activase [Capsicum annuum]
Length = 439
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/440 (76%), Positives = 380/440 (86%), Gaps = 16/440 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MAA VST+GA N A PL +N S + VPS+ F GKSLKKV K +S ++ ++S ++V+
Sbjct: 1 MAASVSTIGAANKA-PLSLNNSVSGTSVPSTAFFGKSLKKVYGKGISSPKVSNRSLRIVA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E DE+KQT DRW GL D+SDDQQDI RGKGMVD+LFQAP +GTH+A+M+SY+Y+
Sbjct: 60 EEKEIDEKKQTDGDRWKGLGTDVSDDQQDIARGKGMVDSLFQAPTGTGTHHAIMNSYEYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
SQGL+QYS+DN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILG+WGGKGQGKSFQC
Sbjct: 120 SQGLKQYSMDNKLDGFYIAPAFMDKLVVHITKNFLQLPNIKIPLILGVWGGKGQGKSFQC 179
Query: 177 ELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
ELVF KMGIN GNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGTMCCLFINDLDAGAG 239
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENCRVPIIVTGNDFSTLYAPLI 299
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRMEKFYWAPTREDRIGVC GIFRTDNVP E +VK+VD+FPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVKIVDSFPGQSIDFFGALRARVYDD 359
Query: 346 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
EVRKW+S GIE +G++L+NS++GPPTFEQPKMTL+KLLEYG MLV+EQENVKRVQLA+
Sbjct: 360 EVRKWVSGTGIEAVGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVKEQENVKRVQLAET 419
Query: 406 YLSEAALGDANDDAIKNGSF 425
YL EAALGDAN DAI G+F
Sbjct: 420 YLKEAALGDANADAINTGAF 439
>gi|383470439|gb|AFH35543.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Brassica oleracea]
Length = 438
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/440 (78%), Positives = 379/440 (86%), Gaps = 15/440 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKV-SQQRILSKSFKVV 58
MAA VSTVGA+N A PL +NGS + + VP++ FLGK S S + + SFKVV
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGAGAASVPATTFLGKKAVTASRFTQSNNKKSNGSFKVV 59
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+ E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH AV+SSY+YISQ
Sbjct: 60 A-VKEDKQTDGDRWKGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHNAVLSSYEYISQ 118
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GL+QY+LDN +DGL+IAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 119 GLKQYNLDNMMDGLFIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCEL 178
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
V AKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRM
Sbjct: 179 VMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRM 238
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRD 298
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTREDRIGVC GIFRTDNV EDIV LVD FPGQSIDFFGALRARVYDDEV
Sbjct: 299 GRMEKFYWAPTREDRIGVCKGIFRTDNVKDEDIVTLVDQFPGQSIDFFGALRARVYDDEV 358
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RK++ +G+E+IGKRLVNS+EGPP FEQP MTL+KL+EYG MLV EQENVKRVQLAD+YL
Sbjct: 359 RKFVEGLGVEKIGKRLVNSREGPPVFEQPAMTLEKLMEYGNMLVMEQENVKRVQLADQYL 418
Query: 408 SEAALGDANDDAIKNGSFYG 427
+EAALGDAN DAI G+FYG
Sbjct: 419 NEAALGDANADAIGRGTFYG 438
>gi|21950712|gb|AAM78591.1| rubisco activase [Chenopodium quinoa]
Length = 438
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/440 (77%), Positives = 379/440 (86%), Gaps = 15/440 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKV--SQQRILSKSFKVV 58
MA VSTVGA A PL +NGSS + VP+S FLG SLKK +S S R S + K
Sbjct: 1 MATAVSTVGAATKA-PLNLNGSSAGASVPTSAFLGSSLKKHTSVRFPSSSRASSMTVKA- 58
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
++Y+E KQ++ DRWA LA DISDDQ DI RGKGMVD+LFQAPM+SGTH V SS +Y SQ
Sbjct: 59 ADYEESKQSNTDRWAHLATDISDDQLDIRRGKGMVDSLFQAPMDSGTHVPVQSSLEYESQ 118
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLR+Y++DN L YIAP+FMDK+VVHITKN+LNLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 119 GLRKYNIDNMLGNFYIAPSFMDKIVVHITKNYLNLPNIKVPLILGIWGGKGQGKSFQCEL 178
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAKMGIN GNAGEPAKLIRQRYREAADII KGKMC LFINDLDAGAGRM
Sbjct: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCALFINDLDAGAGRM 238
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRD 298
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTREDRIGV +GIFRTDNVP++ +VKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 299 GRMEKFYWAPTREDRIGVATGIFRTDNVPEDHVVKLVDTFPGQSIDFFGALRARVYDDEV 358
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKW+SEVGI+ +GK+LVNS++GPP FEQPKMTL+KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 359 RKWVSEVGIDAVGKKLVNSRDGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYL 418
Query: 408 SEAALGDANDDAIKNGSFYG 427
SEAALGDAN DAI +G+F+G
Sbjct: 419 SEAALGDANKDAIASGAFFG 438
>gi|380707033|gb|AFD97617.1| rubisco activase (chloroplast) [Ammopiptanthus mongolicus]
Length = 439
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/439 (78%), Positives = 390/439 (88%), Gaps = 14/439 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKV-SQQRILSKSFKVVS 59
MAA VSTVGAVN PL +NGS + VPSS F G +LKKV+S++ + ++ S SFKVV+
Sbjct: 1 MAASVSTVGAVNRT-PLNLNGSGGGASVPSSAFFGSNLKKVASRLPNTTKVSSGSFKVVA 59
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E D+ KQT +DRW G AYDISDDQQDITRGKGMVD+LFQAP ++GTHYAV+SSY+YIS
Sbjct: 60 AEIDDSKQTDKDRWKGPAYDISDDQQDITRGKGMVDSLFQAPSDAGTHYAVLSSYEYIST 119
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLR+Y+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLREYNLDNNVDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAKMGIN GNAGEPAKL+R+RYREAADII+KGKMC LFIN LDAGAGR+
Sbjct: 180 VFAKMGINPIMMSAGELESGNAGEPAKLMRRRYREAADIIRKGKMCALFINGLDAGAGRL 239
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EE+PRVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEESPRVPIIVTGNDFSTLYAPLIRD 299
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTR+DR+GVC GIFRTDN+ ++D+VKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRVGVCKGIFRTDNITEDDVVKLVDTFPGQSIDFFGALRARVYDDEV 359
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKWI +G+E +GK+LVNSKEGPPTFEQP MTL KLLEYG MLVQEQENVKRVQLA++Y+
Sbjct: 360 RKWIGGIGVEGVGKKLVNSKEGPPTFEQPSMTLQKLLEYGNMLVQEQENVKRVQLAEQYM 419
Query: 408 SEAALGDANDDAIKNGSFY 426
SEAALG+AN+DAIK+GSF+
Sbjct: 420 SEAALGNANEDAIKSGSFF 438
>gi|12643758|sp|Q40565.1|RCA2_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
Flags: Precursor
gi|19990|emb|CAA78703.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 439
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/440 (75%), Positives = 375/440 (85%), Gaps = 16/440 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MA VST+GA N A PL +N S + VPS+ F GK+LKKV K VS ++ ++S ++ +
Sbjct: 1 MATSVSTIGAANKA-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E D +KQT DRW GL D SDDQQDI RGKGMVD+LFQAP +GTH+AV+ SY+Y+
Sbjct: 60 EEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYV 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
SQGLRQY++DNTLDG YIAP+FMDK+VVHITKNFL LPN+KVPLILG+WGGKGQGKSFQC
Sbjct: 120 SQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQC 179
Query: 177 ELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
ELVF KMGIN GNAGEPAKLIRQRYREAA+II+KG +CCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAG 239
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 299
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRMEKFYWAPTREDRIGVC GIFRTDNVP+E ++K+VDTFPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDD 359
Query: 346 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
EVRKW+S GIE IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLA+
Sbjct: 360 EVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAET 419
Query: 406 YLSEAALGDANDDAIKNGSF 425
YL EAALGDAN DAI G+F
Sbjct: 420 YLKEAALGDANADAINTGNF 439
>gi|449459892|ref|XP_004147680.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 443
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/444 (77%), Positives = 384/444 (86%), Gaps = 20/444 (4%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVV- 58
MAA ++VG VN+A PL + GS + VPSSVF G SLKKV +S+V + S SFKV+
Sbjct: 1 MAASAASVGVVNHA-PLSLKGSGSTTSVPSSVFFGNSLKKVVNSRVVNPKPSSGSFKVMA 59
Query: 59 ----SEYDEEKQTSQ-DRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
S+ + EK+T + DRWAGL DISDDQQDITRGKGMVD++FQAPM++GTHYAVMSSY
Sbjct: 60 VESTSDENLEKKTKKIDRWAGLGTDISDDQQDITRGKGMVDSVFQAPMQAGTHYAVMSSY 119
Query: 114 DYISQGLRQY-SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGK 172
+Y+SQG + Y +DN L GLYIAPAFMDK+VVHITKNFL+LPN+KVPLILG+WGGKGQGK
Sbjct: 120 EYLSQGRKSYDGMDNVLGGLYIAPAFMDKLVVHITKNFLSLPNIKVPLILGLWGGKGQGK 179
Query: 173 SFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221
SFQCELVFAKMGI +GNAGEPAKLIRQRYREAADIIKKGKM CLFINDLD
Sbjct: 180 SFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMSCLFINDLD 239
Query: 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 281
AGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLY
Sbjct: 240 AGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLY 299
Query: 282 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 341
APLIRDGRMEKFYWAPTREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRAR
Sbjct: 300 APLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRAR 359
Query: 342 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 401
VYDDEVRKW++ VG++ IGK+LVNSKE PP FEQP M+L+KLLEYG MLVQEQENVKRVQ
Sbjct: 360 VYDDEVRKWVTGVGVQSIGKKLVNSKEPPPKFEQPTMSLEKLLEYGGMLVQEQENVKRVQ 419
Query: 402 LADKYLSEAALGDANDDAIKNGSF 425
LA+ YL+EAALG+AN+DAI G+F
Sbjct: 420 LAETYLNEAALGNANEDAITRGAF 443
>gi|10720248|sp|O64981.1|RCA_PHAVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|3033513|gb|AAC12868.1| rubisco activase [Phaseolus vulgaris]
Length = 441
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/441 (77%), Positives = 384/441 (87%), Gaps = 16/441 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA +STVGAVN L L +NGS + PSS F G SLKKV SS+V ++ S SFK+V+
Sbjct: 1 MAASLSTVGAVNRTL-LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E +E +QT DRW GLAYD+SDDQQDITRGKG+VD+LFQAPM++GTHYAV+SS+ Y+
Sbjct: 60 ADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GLRQY+ DN DG YIAPAF+DK+VVHI KNF+ LPN+KVPLILG+WGGKGQGKSFQC
Sbjct: 120 SAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQC 179
Query: 177 ELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
ELVFAKMGIN GNAGEPAKLIRQRYREA+D+IKKGKMC LFINDLDAGAG
Sbjct: 180 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAG 239
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLI 299
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRMEKFYWAPTREDRIGVC GIFRTD VP++DIV+LVD PGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDD 359
Query: 346 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
EVRKWIS VG++ +GK+LVNSKEGPPTF+QPKMTLDKLL Y MLVQEQENVKRVQLAD+
Sbjct: 360 EVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQ 419
Query: 406 YLSEAALGDANDDAIKNGSFY 426
YL+EAALG+AN+DAIK+GSF+
Sbjct: 420 YLNEAALGNANEDAIKSGSFF 440
>gi|357155667|ref|XP_003577196.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic-like [Brachypodium distachyon]
Length = 440
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/429 (79%), Positives = 363/429 (84%), Gaps = 31/429 (7%)
Query: 28 VPSSVFLGKSLKK----------------VSSKVSQQRILSKSFKVVSEYDEEKQTSQDR 71
PSS FLGK LKK SS+ S R+++ + K V DE KQT DR
Sbjct: 15 TPSS-FLGKKLKKQSNNCFSNNGGSSKTIKSSRPSLVRVMAAANKDV---DEGKQTDGDR 70
Query: 72 WAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG 131
W GLAYDISDDQQDITRGKG+VD LFQAPM GTH AV+SSY+YISQGLRQY DNT+DG
Sbjct: 71 WRGLAYDISDDQQDITRGKGIVDALFQAPMGDGTHEAVLSSYEYISQGLRQYDFDNTMDG 130
Query: 132 LYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----- 186
LYIAPAFMDK+VVH+ KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN
Sbjct: 131 LYIAPAFMDKLVVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 190
Query: 187 ------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 250
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIAD PTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct: 251 NATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 310
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
DRIGVC GIFRTD VP E +V+LVD FPGQSIDFFGALRARVYDDEVRKW+ E+G+E I
Sbjct: 311 DRIGVCKGIFRTDGVPDEAVVRLVDMFPGQSIDFFGALRARVYDDEVRKWVGEIGVENIS 370
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 420
KRLVNSKEGPP FEQPKMT+ KL+EYG MLVQEQENVKRVQLADKYLSEAALG+ANDDA+
Sbjct: 371 KRLVNSKEGPPKFEQPKMTISKLMEYGHMLVQEQENVKRVQLADKYLSEAALGEANDDAM 430
Query: 421 KNGSFYGKA 429
K GSFY KA
Sbjct: 431 KTGSFYAKA 439
>gi|449503259|ref|XP_004161913.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Cucumis sativus]
Length = 443
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/444 (77%), Positives = 383/444 (86%), Gaps = 20/444 (4%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVV- 58
MAA ++VG VN+A PL + GS + VPSSVF G SLKKV +S+V + S SFKV+
Sbjct: 1 MAASAASVGVVNHA-PLSLKGSGSTTSVPSSVFFGNSLKKVVNSRVVNPKPSSGSFKVMA 59
Query: 59 ----SEYDEEKQTSQ-DRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
S+ + EK+T + DRWAGL DISDDQQDITRGKGMVD++FQAPM++GTHYAVMSSY
Sbjct: 60 VESTSDENLEKKTKKIDRWAGLGTDISDDQQDITRGKGMVDSVFQAPMQAGTHYAVMSSY 119
Query: 114 DYISQGLRQY-SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGK 172
+Y+SQG + Y +DN L GLYIAPAFMDK+VVHITKNFL+LPN+KVPLILG+WGGKGQGK
Sbjct: 120 EYLSQGRKSYDGMDNVLGGLYIAPAFMDKLVVHITKNFLSLPNIKVPLILGLWGGKGQGK 179
Query: 173 SFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221
SFQCELVFAKMGI +GNAGEPAKLIRQRYREAADIIKKGKM CLFINDLD
Sbjct: 180 SFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMSCLFINDLD 239
Query: 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 281
AGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLY
Sbjct: 240 AGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLY 299
Query: 282 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 341
APLIRDGRMEKFYWAPTREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRAR
Sbjct: 300 APLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRAR 359
Query: 342 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 401
VYDDEVRKW++ VG++ IGK+LVNSKE PP FEQP M+L KLLEYG MLVQEQENVKRVQ
Sbjct: 360 VYDDEVRKWVTGVGVQSIGKKLVNSKEPPPKFEQPTMSLXKLLEYGGMLVQEQENVKRVQ 419
Query: 402 LADKYLSEAALGDANDDAIKNGSF 425
LA+ YL+EAALG+AN+DAI G+F
Sbjct: 420 LAETYLNEAALGNANEDAITRGAF 443
>gi|8918361|dbj|BAA97584.1| RuBisCO activase small isoform precursor [Oryza sativa]
gi|62733169|gb|AAX95286.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|77552726|gb|ABA95523.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|215694316|dbj|BAG89309.1| unnamed protein product [Oryza sativa Japonica Group]
gi|347737190|gb|AEP20546.1| ribulose bisphosphate carboxylase activase small isoform [Oryza
sativa Japonica Group]
Length = 433
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/412 (81%), Positives = 364/412 (88%), Gaps = 15/412 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITK 148
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 138
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIR 197
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 198
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 199 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 258
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 317
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 259 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 318
Query: 318 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 377
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 319 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378
Query: 378 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKA 429
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG A
Sbjct: 379 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGSA 430
>gi|337263422|gb|AEI69347.1| chloroplast rubisco activase [Ophiopogon japonicus]
Length = 435
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/437 (76%), Positives = 375/437 (85%), Gaps = 14/437 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VSTVGAVN ++PL ++GSS + P+S F G +LKKV+ ++ R+ + SFKV++
Sbjct: 1 MATAVSTVGAVN-SVPLSLHGSSSGAPAPTSAFFGSNLKKVNPSLTHGRVQTGSFKVMAV 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ DE KQT DRW L D SDDQQDI RGKG+VD LFQAPM GTH AV++SY+YISQG
Sbjct: 60 DLDETKQTKTDRWQ-LHKDTSDDQQDIVRGKGLVDPLFQAPMGDGTHEAVLNSYEYISQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y ++N +DG YIAP FMDK+VVHITKN+++LPN+KVPLILGIWGGKGQGK+FQCELV
Sbjct: 119 LRDYGMENKMDGFYIAPEFMDKLVVHITKNYMDLPNIKVPLILGIWGGKGQGKTFQCELV 178
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
F KMGIN GNAGEPAKLIRQRYREAADII KGKMCCLFINDLDAGAGRMG
Sbjct: 179 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTR DRIGVC+GIF TDNV +DIVKLVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTRSDRIGVCTGIFMTDNVAVQDIVKLVDAFPGQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
KWIS++G++++GKRLVNS EG PTFEQPKMTL+KL++YG MLVQEQENVKRVQLADKYLS
Sbjct: 359 KWISDIGVDKVGKRLVNSAEGAPTFEQPKMTLEKLMDYGNMLVQEQENVKRVQLADKYLS 418
Query: 409 EAALGDANDDAIKNGSF 425
EAALGDAN DAIK G F
Sbjct: 419 EAALGDANVDAIKTGKF 435
>gi|108864713|gb|ABG22614.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 428
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/410 (81%), Positives = 363/410 (88%), Gaps = 15/410 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITK 148
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 138
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIR 197
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 198
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 199 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 258
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 317
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 259 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 318
Query: 318 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 377
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 319 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378
Query: 378 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 379 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428
>gi|7960277|gb|AAF71272.1|AF251264_1 ribulose bisphosphate carboxylase activase B [Triticum aestivum]
Length = 432
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/417 (78%), Positives = 361/417 (86%), Gaps = 20/417 (4%)
Query: 31 SVFLGKSLKKVSSKVS--------QQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDD 82
+ FLGK +KK + ++ R++ ++ E DE KQT DRW GLAYDISDD
Sbjct: 17 TTFLGKKVKKQAGALNYYHGGNKINNRVV-RAMAAKKELDEGKQTDADRWKGLAYDISDD 75
Query: 83 QQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKV 142
QQDITRGKG+VD+LFQAPM GTH A++SSY+YISQGLR+Y DNT+DGLYIAPAFMDK+
Sbjct: 76 QQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKL 135
Query: 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGE 191
+VH+ KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN GNAGE
Sbjct: 136 IVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 195
Query: 192 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 251
PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD P
Sbjct: 196 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAP 255
Query: 252 TNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 311
TNVQ PGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR
Sbjct: 256 TNVQFPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 315
Query: 312 TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPP 371
TDNVP E +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+ E+G+E I KRLVNS+EGPP
Sbjct: 316 TDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPP 375
Query: 372 TFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGK 428
TF+QPKMT++KL+EYG MLVQEQENVKRVQLADKYLSEAALG ANDDA+ G+FYGK
Sbjct: 376 TFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMATGAFYGK 432
>gi|225580059|gb|ACN94267.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Solenostemon scutellarioides]
Length = 436
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/438 (77%), Positives = 375/438 (85%), Gaps = 16/438 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VST+GAVN +PL +NGS VPSS F+G SLKK S S ++ S SFKVV+E
Sbjct: 1 MAAAVSTIGAVNR-VPLNLNGSGGGGAVPSSSFMGSSLKKAMSNPSG-KVSSGSFKVVAE 58
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+K + DRW GL D+SDDQQDI RGKGMVD+LFQAP GTH A+M+SY+YISQG
Sbjct: 59 --AKKPSPGDRWGGLIEDVSDDQQDIVRGKGMVDSLFQAPSGMGTHDAIMNSYEYISQGQ 116
Query: 121 RQY-SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
+ Y LDNTLDGLYIAPAFMDK+VVH++KNF+ LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 117 KTYDHLDNTLDGLYIAPAFMDKLVVHLSKNFMTLPNIKVPLILGVWGGKGQGKSFQCELV 176
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
F KMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 177 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 236
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 237 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 296
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFRTD VP E +V+LVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 297 RMEKFYWAPTREDRIGVCKGIFRTDGVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVR 356
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
KW+S VG+E IG RLVNS+EGPP FEQPKMTL+KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 357 KWVSGVGVENIGTRLVNSREGPPKFEQPKMTLEKLLEYGFMLVQEQENVKRVQLADKYLK 416
Query: 409 EAALGDANDDAIKNGSFY 426
+AALGDAN DAI+ G+F+
Sbjct: 417 DAALGDANKDAIERGTFF 434
>gi|167999775|ref|XP_001752592.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696123|gb|EDQ82463.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 477
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/451 (74%), Positives = 375/451 (83%), Gaps = 16/451 (3%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQD 85
S VPSS FLG KV + + KS +VV+E + K+ DRWAGL DISDDQQD
Sbjct: 28 SAVPSSAFLG-CKSKVPASAALGLAKGKS-RVVAEAESSKKV--DRWAGLGTDISDDQQD 83
Query: 86 ITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVH 145
I RGKG+VD LFQ P GT AV+SS+DYISQG R YS+DN DGLYIAPAFMDK+V+H
Sbjct: 84 IQRGKGLVDALFQGPQGMGTQNAVLSSWDYISQGQRTYSMDNIKDGLYIAPAFMDKLVIH 143
Query: 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAK 194
I KNF++LP +KVPLILGIWGGKGQGKSFQCELV +K+GIN GNAGEPAK
Sbjct: 144 IAKNFMDLPGIKVPLILGIWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAK 203
Query: 195 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254
LIRQRYREAADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV
Sbjct: 204 LIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 263
Query: 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDN 314
QLPG+YN+E PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DN
Sbjct: 264 QLPGVYNKETIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDN 323
Query: 315 VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFE 374
V +D+VKLVD FPGQSIDFFGALRARVYDDEVRKWI +VGIE IG+ LVNSK+GPPTF+
Sbjct: 324 VHDDDVVKLVDKFPGQSIDFFGALRARVYDDEVRKWIGKVGIENIGRNLVNSKDGPPTFQ 383
Query: 375 QPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY-GKAAQQV 433
+P MT++KL+EYG MLVQEQ+NVKRVQLA++YLS ALGDAN DAIK G+FY G AAQ +
Sbjct: 384 KPAMTIEKLMEYGDMLVQEQQNVKRVQLAEEYLSSDALGDANADAIKQGTFYGGNAAQHM 443
Query: 434 KVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
+ VPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 444 DLKVPEGCTDPNAENFDPTARSDDGTCVYDF 474
>gi|62733297|gb|AAX95414.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
Length = 466
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/410 (81%), Positives = 363/410 (88%), Gaps = 15/410 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 57 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 116
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITK 148
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 117 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 176
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIR 197
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIR
Sbjct: 177 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 236
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 237 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 296
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 317
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 297 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 356
Query: 318 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 377
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 357 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 416
Query: 378 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 417 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 466
>gi|302780018|ref|XP_002971784.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
gi|300160916|gb|EFJ27533.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
Length = 451
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/417 (77%), Positives = 362/417 (86%), Gaps = 12/417 (2%)
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ DE Q+ DRW GL D SDDQQDITRGKGMVD+L+Q P GT AVMSS +Y++
Sbjct: 1 QVDESSQSKTDRWQGLGTDTSDDQQDITRGKGMVDSLYQGPQGGGTQTAVMSSLEYLNTA 60
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
R YS+DNT+DGLYIAPAFMDK+V+HI+KNF+ LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 61 QRVYSMDNTIDGLYIAPAFMDKLVIHISKNFMALPNIKVPLILGVWGGKGQGKSFQCELV 120
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 227
F+K+GIN GNAGEPAKLIRQRYREAADIIKK G+MC LFINDLDAGAGRM
Sbjct: 121 FSKLGINPIAMSAGELESGNAGEPAKLIRQRYREAADIIKKKGQMCVLFINDLDAGAGRM 180
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPG+Y +EE PRVPIIVTGNDFSTLYAPLIRD
Sbjct: 181 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYTKEELPRVPIIVTGNDFSTLYAPLIRD 240
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTREDRIGVC GIFRTD+VP EDIVKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 241 GRMEKFYWAPTREDRIGVCKGIFRTDDVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEV 300
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKWI++VG+E IG +LVNSK+GPPTF +P MT+DKLLEYG MLVQEQENVKR LADKY+
Sbjct: 301 RKWITQVGVENIGPKLVNSKDGPPTFPKPPMTIDKLLEYGNMLVQEQENVKRYHLADKYM 360
Query: 408 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
++LGDAN+D + +FYGKAAQQ+ +PVPEGCTDP AAN+DPTARSDDG+C Y F
Sbjct: 361 KGSSLGDANEDEREKDTFYGKAAQQINLPVPEGCTDPNAANFDPTARSDDGTCEYDF 417
>gi|10720247|sp|O49074.1|RCA_SOLPN RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|2707330|gb|AAC15236.1| rubisco activase [Solanum pennellii]
Length = 459
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/435 (75%), Positives = 374/435 (85%), Gaps = 15/435 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MAA VST+GA + A PL +N S + VPS+ F GKSLKKV +K VS ++ +++ +VV+
Sbjct: 1 MAASVSTIGAASKA-PLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ E +T +DRW GL + SDDQQDI RGKG+VD+LFQAP +GTH+A+M+SY+Y+SQ
Sbjct: 60 Q--EVDETKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
L+ Y LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 118 LKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELV 177
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
F KMGIN GNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMG
Sbjct: 178 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMG 237
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 297
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFRTDNVP+E +VK+VD+FPGQSIDFFGALRARVYDDEVR
Sbjct: 298 RMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVR 357
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
KW+S GIE IG++L+NS++GPPTFEQPKMTL+KLLEYG MLVQEQENVKRVQLA+ YL
Sbjct: 358 KWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLK 417
Query: 409 EAALGDANDDAIKNG 423
EAALGDAN DAI G
Sbjct: 418 EAALGDANADAINTG 432
>gi|1778414|gb|AAC28134.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Oryza
sativa Japonica Group]
Length = 432
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/412 (80%), Positives = 363/412 (88%), Gaps = 16/412 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITK 148
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR Y DNT+ G YIAP+FMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPSFMDKLVVHISK 138
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIR 197
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN GN GEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIR 197
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 317
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 258 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 317
Query: 318 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 377
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 318 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 377
Query: 378 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKA 429
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG A
Sbjct: 378 MTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGSA 429
>gi|302760819|ref|XP_002963832.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
gi|300169100|gb|EFJ35703.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
Length = 451
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/417 (77%), Positives = 361/417 (86%), Gaps = 12/417 (2%)
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ DE Q+ DRW GL D SDDQQDITRGKGMVD+L+Q P GT AVMSS +Y++
Sbjct: 1 QVDESSQSKTDRWQGLGTDTSDDQQDITRGKGMVDSLYQGPQGGGTQTAVMSSLEYLNTA 60
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
R YS+DNT+DGLYIAPAFMDK+V+HI+KNF+ LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 61 QRVYSMDNTIDGLYIAPAFMDKLVIHISKNFMALPNIKVPLILGVWGGKGQGKSFQCELV 120
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 227
F+K+GIN GNAGEPAKLIRQRYREAADIIKK G+MC LFINDLDAGAGRM
Sbjct: 121 FSKLGINPIAMSAGELESGNAGEPAKLIRQRYREAADIIKKKGQMCVLFINDLDAGAGRM 180
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPG+Y +EE PRVPIIVTGNDFSTLYAPLIRD
Sbjct: 181 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYTKEELPRVPIIVTGNDFSTLYAPLIRD 240
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTREDRIGVC GIFR+D VP EDIVKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 241 GRMEKFYWAPTREDRIGVCKGIFRSDEVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEV 300
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKWI++VG+E IG +LVNSK+GPPTF +P MT+DKLLEYG MLV+EQENVKR LADKY+
Sbjct: 301 RKWITQVGVENIGPKLVNSKDGPPTFPKPPMTIDKLLEYGNMLVKEQENVKRYHLADKYM 360
Query: 408 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
++LGDAN+D + +FYGKAAQQ+ +PVPEGCTDP AAN+DPTARSDDG+C Y F
Sbjct: 361 KGSSLGDANEDEREKDTFYGKAAQQINLPVPEGCTDPNAANFDPTARSDDGTCEYDF 417
>gi|10720253|sp|Q42450.1|RCAB_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
B, chloroplastic; Short=RA B; Short=RuBisCO activase B;
Flags: Precursor
gi|167093|gb|AAA62703.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare]
gi|167095|gb|AAA63162.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 425
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/412 (79%), Positives = 361/412 (87%), Gaps = 17/412 (4%)
Query: 31 SVFLGKSLKKVSSKVSQQRILSKSFKVVS---EYDEEKQTSQDRWAGLAYDISDDQQDIT 87
++FLGK +K ++ S+ +V++ E D+ KQT DRW GLAYDISDDQQDIT
Sbjct: 17 TIFLGKKVKNYYH--GGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDIT 74
Query: 88 RGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHIT 147
RGKG+VD+LFQAPM GTH A++SSY+YISQGLR+Y DNT+DGLYIAPAFMDK++VH+
Sbjct: 75 RGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLA 134
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLI 196
KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN GN GEPAKLI
Sbjct: 135 KNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLI 193
Query: 197 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
RQRYREAADII KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQL
Sbjct: 194 RQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQL 253
Query: 257 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 316
PGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTDNVP
Sbjct: 254 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 313
Query: 317 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 376
E +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+ E+G+E I KRLVNS+EGPPTF+QP
Sbjct: 314 DEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQP 373
Query: 377 KMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGK 428
KMT++KL+EYG MLVQEQENVKRVQLADKYLSEAALG ANDDA+K G+FYGK
Sbjct: 374 KMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425
>gi|162312077|gb|ABX84141.1| rubisco activase [Ipomoea batatas]
gi|407911674|gb|AFU50385.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform a [Ipomoea batatas]
Length = 439
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/444 (74%), Positives = 371/444 (83%), Gaps = 25/444 (5%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VST+GAVN A P+ SL P++ F GKSLKKVS + + ++ + S
Sbjct: 1 MATSVSTIGAVNKA-PVGA------SLAPNTGFYGKSLKKVSFRNGSSKNMNWQIRASSD 53
Query: 60 ------EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
E DE KQT +DRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+SSY
Sbjct: 54 PSPAQPEIDESKQTHEDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVLSSY 113
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+Y+SQG + YSLDN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILGIWGGKGQGKS
Sbjct: 114 EYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGIWGGKGQGKS 173
Query: 174 FQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222
FQCELVF KMGIN GNAGEPAKLIRQRYREAA+ I+KG MCCLFINDLDA
Sbjct: 174 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDA 233
Query: 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 282
GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYA
Sbjct: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 293
Query: 283 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARV 342
PLIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP E +VKLVDTFPGQSIDFFGALRARV
Sbjct: 294 PLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARV 353
Query: 343 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 402
YDDEVRK+++ +G+E++ +RL+NS+EG P F QPKMT++KLLEYG MLVQEQENVKRVQL
Sbjct: 354 YDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQL 413
Query: 403 ADKYLSEAALGDANDDAIKNGSFY 426
ADKYL EAALGDAN DAI NG+F+
Sbjct: 414 ADKYLKEAALGDANADAINNGTFF 437
>gi|296086200|emb|CBI31641.3| unnamed protein product [Vitis vinifera]
Length = 411
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/438 (75%), Positives = 368/438 (84%), Gaps = 40/438 (9%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRF-SLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MA VSTVGAVN AL L +NG+S + VPSS FLG SLKKV+S+ + ++ S SFKVV+
Sbjct: 1 MATAVSTVGAVNRAL-LSLNGASGAGASVPSSAFLGSSLKKVNSRFTHSKVSSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E D++ QT +D+W GLA+D SDDQQDI RGKGMVD+LFQAPM++GTHYAVMSSY+YIS G
Sbjct: 60 EVDDDMQTEKDKWKGLAFDTSDDQQDIVRGKGMVDSLFQAPMDAGTHYAVMSSYEYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 179
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
F+KMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+G
Sbjct: 180 FSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLG 239
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVP+IVTGNDFSTLYAPLIRDG
Sbjct: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVIVTGNDFSTLYAPLIRDG 299
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC+GIFRTDNVP EDIVKLVDTFPGQSIDFFGALRARVYDD VR
Sbjct: 300 RMEKFYWAPTREDRIGVCTGIFRTDNVPVEDIVKLVDTFPGQSIDFFGALRARVYDDMVR 359
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
WI+ +G++ YG MLVQEQENVKRVQLADKYL+
Sbjct: 360 DWIAGIGVD---------------------------TYGSMLVQEQENVKRVQLADKYLN 392
Query: 409 EAALGDANDDAIKNGSFY 426
EAALGDAN+DAIK+GSF+
Sbjct: 393 EAALGDANEDAIKSGSFF 410
>gi|407911676|gb|AFU50386.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform b [Ipomoea batatas]
Length = 439
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/444 (74%), Positives = 371/444 (83%), Gaps = 25/444 (5%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VST+GAVN A P+ SL P++ F GKSLKKVS + + ++ + S
Sbjct: 1 MATSVSTIGAVNKA-PVGA------SLAPNTGFYGKSLKKVSFRNGSPKNMNWQIRASSD 53
Query: 60 ------EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
E DE KQT +DRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+SSY
Sbjct: 54 PSPAKPEIDESKQTHEDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVLSSY 113
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+Y+SQG + YSLDN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILGIWGGKGQGKS
Sbjct: 114 EYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGIWGGKGQGKS 173
Query: 174 FQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222
FQCELVF KMGIN GNAGEPAKLIRQRYREAA+ I+KG MCCLFINDLDA
Sbjct: 174 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDA 233
Query: 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 282
GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYA
Sbjct: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 293
Query: 283 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARV 342
PLIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP E +VKLVDTFPGQSIDFFGALRARV
Sbjct: 294 PLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARV 353
Query: 343 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 402
YDDEVRK+++ +G+E++ +RL+NS+EG P F QPKMT++KLLEYG MLVQEQENVKRVQL
Sbjct: 354 YDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQL 413
Query: 403 ADKYLSEAALGDANDDAIKNGSFY 426
ADKYL EAALGDAN DAI NG+F+
Sbjct: 414 ADKYLKEAALGDANADAINNGTFF 437
>gi|407911666|gb|AFU50381.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform [Ipomoea batatas]
Length = 439
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/444 (74%), Positives = 371/444 (83%), Gaps = 25/444 (5%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VST+GAVN A P+ SL P++ F GKSLKKVS + + ++ + S
Sbjct: 1 MATSVSTIGAVNKA-PVGA------SLAPNTGFYGKSLKKVSFRNGSPKNMNWQIRASSD 53
Query: 60 ------EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
E DE KQT +DRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+SSY
Sbjct: 54 PSPAQPEIDESKQTHEDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVLSSY 113
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+Y+SQG + YSLDN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILGIWGGKGQGKS
Sbjct: 114 EYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGIWGGKGQGKS 173
Query: 174 FQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222
FQCELVF KMGIN GNAGEPAKLIRQRYREAA+ I+KG MCCLFINDLDA
Sbjct: 174 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDA 233
Query: 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 282
GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYA
Sbjct: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 293
Query: 283 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARV 342
PLIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP E +VKLVDTFPGQSIDFFGALRARV
Sbjct: 294 PLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARV 353
Query: 343 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 402
YDDEVRK+++ +G+E++ +RL+NS+EG P F QPKMT++KLLEYG MLVQEQENVKRVQL
Sbjct: 354 YDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQL 413
Query: 403 ADKYLSEAALGDANDDAIKNGSFY 426
ADKYL EAALGDAN DAI NG+F+
Sbjct: 414 ADKYLKEAALGDANADAINNGTFF 437
>gi|410927436|gb|AFV93497.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 371
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/371 (86%), Positives = 344/371 (92%), Gaps = 11/371 (2%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+YISQGL+ Y+LDN +DG Y
Sbjct: 1 GLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYISQGLKTYNLDNNMDGFY 60
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------- 186
IAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN
Sbjct: 61 IAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 120
Query: 187 ----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 242
GNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 121 ELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNA 180
Query: 243 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 302
TLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 181 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 240
Query: 303 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR 362
IGVC GIFRTD V EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVG+ +GK+
Sbjct: 241 IGVCKGIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGVASVGKK 300
Query: 363 LVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKN 422
LVNS+EGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSEAALG+AN+D+I
Sbjct: 301 LVNSREGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINR 360
Query: 423 GSFYGKAAQQV 433
G+FYGKAAQQV
Sbjct: 361 GTFYGKAAQQV 371
>gi|407911678|gb|AFU50387.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform c [Ipomoea batatas]
Length = 439
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/444 (74%), Positives = 371/444 (83%), Gaps = 25/444 (5%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VST+GAVN A P+ SL P++ F GKSLKKVS + + ++ + S
Sbjct: 1 MATSVSTIGAVNKA-PVGA------SLAPNTGFYGKSLKKVSFRNGSPKNMNWQIRASSD 53
Query: 60 ------EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
E DE KQT +DRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+SSY
Sbjct: 54 PSPAQPEIDESKQTHEDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVLSSY 113
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+Y+SQG + YSLDN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILGIWGGKGQGKS
Sbjct: 114 EYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGIWGGKGQGKS 173
Query: 174 FQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222
FQCELVF KMGIN GNAGEPAKLIRQRYREAA+ I+KG MCCLFINDLDA
Sbjct: 174 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDA 233
Query: 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 282
GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYA
Sbjct: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 293
Query: 283 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARV 342
PLIRDGRMEKFYWAPTR+DR+GVC GIF+TD VP E +VKLVDTFPGQSIDFFGALRARV
Sbjct: 294 PLIRDGRMEKFYWAPTRDDRVGVCKGIFKTDGVPDEHVVKLVDTFPGQSIDFFGALRARV 353
Query: 343 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 402
YDDEVRK+++ +G+E++ +RL+NS+EG P F QPKMT++KLLEYG MLVQEQENVKRVQL
Sbjct: 354 YDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQL 413
Query: 403 ADKYLSEAALGDANDDAIKNGSFY 426
ADKYL EAALGDAN DAI NG+F+
Sbjct: 414 ADKYLKEAALGDANADAINNGTFF 437
>gi|116789461|gb|ABK25255.1| unknown [Picea sitchensis]
Length = 440
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/440 (72%), Positives = 368/440 (83%), Gaps = 13/440 (2%)
Query: 1 MAAVVSTVGA--VNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVV 58
MA + VG+ V++ LPL +S VPS+ F G LKK S S + FKVV
Sbjct: 1 MATAAAAVGSITVSSNLPLSSGQASILKTVPSTGFFGCGLKKTSFNASHTFTKANHFKVV 60
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+E DE KQT +D+W GLA+D SDDQ DI RGKG VD+LFQAPM SGTH VMS+YDYIS
Sbjct: 61 AEIDEGKQTDKDKWKGLAFDESDDQMDIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYIST 120
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
R Y DNT+DG YIAP+FMDK++VHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 121 AQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCEL 180
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAK+GIN G+AGEPAKL+R+RYREA+DI+KKGKMC LFINDLDAGAGRM
Sbjct: 181 VFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRM 240
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
G TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRD
Sbjct: 241 GSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRD 300
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTR+DRIGVC GIFR DNV +D+V+LVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 301 GRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEV 360
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKW++ GI+ IGK+L+NSKEGPPTFE+P MT++KLLEYG MLV EQ+NVKRVQLADKY+
Sbjct: 361 RKWVAGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYM 420
Query: 408 SEAALGDANDDAIKNGSFYG 427
SEAALGDAN+D+IK G+FYG
Sbjct: 421 SEAALGDANEDSIKRGTFYG 440
>gi|410927466|gb|AFV93498.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 371
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/371 (85%), Positives = 345/371 (92%), Gaps = 11/371 (2%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+Y+SQGL+ Y+LDN +DG Y
Sbjct: 1 GLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYLSQGLKTYNLDNNMDGFY 60
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------- 186
IAPAFMDK+VVHITKNF++LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN
Sbjct: 61 IAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 120
Query: 187 ----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 242
GNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 121 ELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNA 180
Query: 243 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 302
TLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 181 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 240
Query: 303 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR 362
+GVC GIFRTD +P EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS+VG+ +GK+
Sbjct: 241 VGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISDVGVAGVGKK 300
Query: 363 LVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKN 422
LVNS++GPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSEAALG+AN+D+I
Sbjct: 301 LVNSRDGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINR 360
Query: 423 GSFYGKAAQQV 433
G+FYGKAAQQV
Sbjct: 361 GTFYGKAAQQV 371
>gi|32481063|gb|AAP83928.1| Rubisco activase beta form precursor [Deschampsia antarctica]
Length = 428
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/418 (77%), Positives = 360/418 (86%), Gaps = 22/418 (5%)
Query: 28 VPSSVFLGKSLKK-VSSKVSQQRILSKSFK------VVSEYDEEKQTSQDRWAGLAYDIS 80
P+S FLG LKK V+S V+ KSFK + + DE KQT D+W GLAYDIS
Sbjct: 15 TPTS-FLGNKLKKQVTSAVNYH---GKSFKANRFTVMAKDIDEGKQTDGDKWKGLAYDIS 70
Query: 81 DDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMD 140
DDQQDITRGKG+VD+LFQAPM GTH AV+SSY+Y+SQGL++Y DNT+ G YIAPAFMD
Sbjct: 71 DDQQDITRGKGIVDSLFQAPMGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMD 130
Query: 141 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189
K+VVH++KNF+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGIN GNA
Sbjct: 131 KLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD
Sbjct: 191 GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 250
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGI 309
PTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GI
Sbjct: 251 APTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGI 310
Query: 310 FRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEG 369
F+TDNV E +VK+VDTFPGQSIDFFGALRARVYD EVRKW+S GIE IGKRLVNS++G
Sbjct: 311 FQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDVEVRKWVSSTGIENIGKRLVNSRDG 370
Query: 370 PPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
P TFEQPKMT++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 371 PVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANKDAMKTGSFYG 428
>gi|266893|sp|Q01587.1|RCA_CUCSA RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|18284|emb|CAA47906.1| rubisco activase [Cucumis sativus]
Length = 413
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/413 (78%), Positives = 358/413 (86%), Gaps = 15/413 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VST+GAVN +N S+ LVP+S FLG LK VSS+ + ++++ +FK+V+E
Sbjct: 1 MAATVSTIGAVNRT---TLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAE 56
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DEEKQT +D+W GLA+D SDDQQDITRGKG+ D LFQAPM +GTH AV+SSY+YIS GL
Sbjct: 57 QDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGL 116
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R YS DN +DG YIAPAFMDK+ VHI KNFL LPN+KVPLILG+WGGKGQGKSFQCELVF
Sbjct: 117 RDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVF 176
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR+GG
Sbjct: 177 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGG 236
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 237 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 296
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
M+KFYWAPTREDRIG+C+GIFRTD VP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 297 MDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 356
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 402
W VG+ERIG+ LVNSKE PPTF+QPKMT++KLLEYG MLV EQENVKRV+L
Sbjct: 357 WAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>gi|162458161|ref|NP_001104921.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
precursor [Zea mays]
gi|29429152|sp|Q9ZT00.3|RCA_MAIZE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|19855034|gb|AAC97932.3| ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
gi|195620038|gb|ACG31849.1| ribulose bisphosphate carboxylase/oxygenase activase [Zea mays]
gi|313574198|dbj|BAJ41042.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Zea mays]
gi|413920136|gb|AFW60068.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 1 [Zea mays]
gi|413920137|gb|AFW60069.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 2 [Zea mays]
Length = 433
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/414 (77%), Positives = 358/414 (86%), Gaps = 18/414 (4%)
Query: 31 SVFLGKSLKK--VSSKVSQQRILSKS---FKVVS--EYDEEKQTSQDRWAGLAYDISDDQ 83
S FLGK L K VS+ V+ S S FK ++ E DE KQT +DRW GLAYDISDDQ
Sbjct: 19 SSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQ 78
Query: 84 QDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV 143
QDITRGKG+VD LFQAPM GTH AV+SSYDYISQG + Y+ DN +DG YIA FMDK+V
Sbjct: 79 QDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLV 138
Query: 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEP 192
VH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGI +GNAGEP
Sbjct: 139 VHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEP 198
Query: 193 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 252
AKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT
Sbjct: 199 AKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 258
Query: 253 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRT 312
NVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRT
Sbjct: 259 NVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRT 318
Query: 313 DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPT 372
D V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+SE G+E I ++LVNSKEGPPT
Sbjct: 319 DGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPT 378
Query: 373 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 426
FEQPK+T++KLLEYG MLV EQENVKRVQLADKYL+EAALG+AN+DA+K GSF+
Sbjct: 379 FEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>gi|326494300|dbj|BAJ90419.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/409 (77%), Positives = 358/409 (87%), Gaps = 14/409 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQ 198
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 318
MYN+EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 319 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 378
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 379 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|313574196|dbj|BAJ41041.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/409 (77%), Positives = 358/409 (87%), Gaps = 14/409 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQ 198
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 318
MYN+EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 319 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 378
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 379 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|116283512|gb|AAH29790.1| Unknown (protein for MGC:35458) [Homo sapiens]
Length = 427
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/409 (77%), Positives = 359/409 (87%), Gaps = 14/409 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGL++Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQ 198
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 318
MYN+EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 319 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 378
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW++ GIE IGK+LVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVTSTGIENIGKKLVNSRDGPVTFEQPKM 378
Query: 379 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K G+FYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGTFYG 427
>gi|167096|gb|AAA63163.1| ribulose 1,5-bisphosphate carboxylase activase isoform 1 [Hordeum
vulgare subsp. vulgare]
Length = 427
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/409 (77%), Positives = 357/409 (87%), Gaps = 14/409 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQ 198
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 318
MYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 319 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 378
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 379 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|445628|prf||1909374A RuBisCO activase
Length = 383
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/376 (83%), Positives = 339/376 (90%), Gaps = 11/376 (2%)
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR 121
D +KQT DRW GL D SDDQQDITRGKGMVD+LFQAP +GTH+AV+ SY+Y+SQGLR
Sbjct: 6 DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 65
Query: 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 181
QY+LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 66 QYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFR 125
Query: 182 KMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 230
KMGIN GNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMGGT
Sbjct: 126 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGT 185
Query: 231 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 290
TQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 186 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRM 245
Query: 291 EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 350
EKFYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDDEVRKW
Sbjct: 246 EKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKW 305
Query: 351 ISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 410
+S GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYL EA
Sbjct: 306 VSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEA 365
Query: 411 ALGDANDDAIKNGSFY 426
ALGDAN DAI NGSF+
Sbjct: 366 ALGDANADAINNGSFF 381
>gi|4261547|gb|AAD13841.1|S45033_11 rubisco activase [Spinacia oleracea]
Length = 435
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/438 (73%), Positives = 364/438 (83%), Gaps = 14/438 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VSTVGA A PL +NGSS + VP+S FLG SLKK ++ + S V +
Sbjct: 1 MATAVSTVGAATRA-PLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+EEK T D+WA LA D SDDQ DI RGKGMVD+LFQAP ++GTH + SS++Y SQGL
Sbjct: 60 ENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 117
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R+Y +DN L YIAPAFMDK+VVHITKNFLNLPN+K+PLILG+WGGKGQGKSFQCELVF
Sbjct: 118 RKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 177
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AK+GIN GNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGG
Sbjct: 178 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 297
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTREDRIGVC+GIF+TD VP E +VKLVD FPGQSIDFFGALRARVY DEVRK
Sbjct: 298 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRK 357
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
W++ VG++ +GK+LVNSK+GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S
Sbjct: 358 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
Query: 410 AALGDANDDAIKNGSFYG 427
AALGDAN DAI G+F+G
Sbjct: 418 AALGDANKDAIDRGTFFG 435
>gi|242072103|ref|XP_002451328.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
gi|241937171|gb|EES10316.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
Length = 440
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/421 (75%), Positives = 357/421 (84%), Gaps = 25/421 (5%)
Query: 31 SVFLGKSLKK--VSSKVSQQRILSKS----------FKVVS--EYDEEKQTSQDRWAGLA 76
S FLGK L K VS+ + KS FKV++ E DE KQ+ QDRW GLA
Sbjct: 19 SSFLGKKLSKQQVSAAAAVNYYHGKSSSSAAANVNRFKVMAAKEVDETKQSDQDRWKGLA 78
Query: 77 YDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAP 136
YD+SDDQQDITRGKGM+D+LFQAPM GTH AV+SSYDYISQG + YS DN +DG YI+
Sbjct: 79 YDVSDDQQDITRGKGMIDSLFQAPMGDGTHVAVLSSYDYISQGQKTYSFDNMMDGFYISK 138
Query: 137 AFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI----------- 185
+FMDK+VVH++KNF++LPN+KVPLILGIWGGKGQGKSFQCELVF+KMGI
Sbjct: 139 SFMDKLVVHLSKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFSKMGIIPIMMSAGELE 198
Query: 186 NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 245
+GNAGEPAKLIRQRYREAAD+I KGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNATLM
Sbjct: 199 SGNAGEPAKLIRQRYREAADLISKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 258
Query: 246 NIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 305
NIADNPTNVQLPGMYN+ +N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV
Sbjct: 259 NIADNPTNVQLPGMYNKVDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 318
Query: 306 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVN 365
C GIFRTD V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR+W++E G+E I K+LVN
Sbjct: 319 CKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVAETGVENIAKKLVN 378
Query: 366 SKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 425
SKEGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYL+EAALG AN+DA+K G+F
Sbjct: 379 SKEGPPTFEQPKMTIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGAANEDAMKTGNF 438
Query: 426 Y 426
+
Sbjct: 439 F 439
>gi|100615|pir||C23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A short
form precursor - barley
gi|167091|gb|AAA62702.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 427
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/409 (77%), Positives = 356/409 (87%), Gaps = 14/409 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLA DISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLATDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQ 198
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 318
MYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVCDE 318
Query: 319 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 378
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 379 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|223948607|gb|ACN28387.1| unknown [Zea mays]
Length = 383
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/378 (81%), Positives = 340/378 (89%), Gaps = 11/378 (2%)
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +DRW GLAYDISDDQQDITRGKG+VD LFQAPM GTH AV+SSYDYISQG
Sbjct: 5 EVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQG 64
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
+ Y+ DN +DG YIA FMDK+VVH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 65 QKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 124
Query: 180 FAKMGI-----------NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
FAKMGI +GNAGEPAKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMG
Sbjct: 125 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMG 184
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 185 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDG 244
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFRTD V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 245 RMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVR 304
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
+W+SE G+E I ++LVNSKEGPPTFEQPK+T++KLLEYG MLV EQENVKRVQLADKYL+
Sbjct: 305 RWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLN 364
Query: 409 EAALGDANDDAIKNGSFY 426
EAALG+AN+DA+K GSF+
Sbjct: 365 EAALGEANEDAMKTGSFF 382
>gi|302803723|ref|XP_002983614.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
gi|300148451|gb|EFJ15110.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
Length = 440
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/444 (70%), Positives = 361/444 (81%), Gaps = 23/444 (5%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-------VSSKVSQQRILSK 53
MA+ + V V A+ L SS +S FLG +LK+ +S + R++ +
Sbjct: 1 MASSLQAV-PVAQAVSLPAQKSSSKVACLNSQFLGLNLKRKNAFQASLSHAMGHSRVVCE 59
Query: 54 SFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
S S DE KQ+++DRW GLA DISDDQQDITRGKGMVDTL+Q M GT A+MSSY
Sbjct: 60 S---SSTEDETKQSAKDRWGGLATDISDDQQDITRGKGMVDTLYQGAMGMGTQTAIMSSY 116
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+YIS R ++ DNT DG YIAPAFM+K+++HI KNF++LPN+KVPLILGIWGGKGQGKS
Sbjct: 117 EYISTAQRNFAFDNTKDGFYIAPAFMEKLMIHIAKNFMSLPNIKVPLILGIWGGKGQGKS 176
Query: 174 FQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLD 221
FQCELVF+K+G+N GNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLD
Sbjct: 177 FQCELVFSKLGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLD 236
Query: 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 281
AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG+YN+EE PRVPIIVTGNDFSTLY
Sbjct: 237 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYNKEEIPRVPIIVTGNDFSTLY 296
Query: 282 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 341
APLIRDGRMEK+YWAPTREDRIGVC GIFRTD + ++D+VKLVD FPGQSIDFFGALRAR
Sbjct: 297 APLIRDGRMEKYYWAPTREDRIGVCKGIFRTDGIAEDDMVKLVDAFPGQSIDFFGALRAR 356
Query: 342 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 401
VYDDEVRKWI G+E IG +LVNS++GPPTF +P MT++KL+ YG MLV+EQENVKRVQ
Sbjct: 357 VYDDEVRKWIESTGVENIGSKLVNSRDGPPTFAKPAMTINKLMSYGYMLVKEQENVKRVQ 416
Query: 402 LADKYLSEAALGDANDDAIKNGSF 425
LA+KY+SEAALGDAN+DAIK G+F
Sbjct: 417 LAEKYMSEAALGDANEDAIKQGTF 440
>gi|118486993|gb|ABK95328.1| unknown [Populus trichocarpa]
Length = 361
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/361 (83%), Positives = 334/361 (92%), Gaps = 12/361 (3%)
Query: 79 ISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAF 138
+SDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+SQGLR Y+LDN +DG YIAPAF
Sbjct: 1 MSDDQQDITRGKGMVDSLFQAPQGTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAF 60
Query: 139 MDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------G 187
MDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGI+ G
Sbjct: 61 MDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESG 120
Query: 188 NAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
NAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR+GGTTQYTVNNQMVNATLMN
Sbjct: 121 NAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMN 180
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 306
IADNPTNVQLPGMYN+E+NPRVP+IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC
Sbjct: 181 IADNPTNVQLPGMYNKEDNPRVPVIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 240
Query: 307 SGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNS 366
GIF+TDNVP++DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+S VG+E IGK+LVNS
Sbjct: 241 IGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGVESIGKKLVNS 300
Query: 367 KEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 426
+EGPPTFEQP MT++KL EYG MLV+EQENVKRVQLADKYLS+AALG+AN DAI+ G+FY
Sbjct: 301 REGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSDAALGEANQDAIERGTFY 360
Query: 427 G 427
G
Sbjct: 361 G 361
>gi|302802165|ref|XP_002982838.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
gi|300149428|gb|EFJ16083.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
Length = 440
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 310/444 (69%), Positives = 360/444 (81%), Gaps = 23/444 (5%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-------VSSKVSQQRILSK 53
MA+ + V V A+ L SS +S FLG +LK+ +S + R++ +
Sbjct: 1 MASSLQAV-PVAQAVSLPAQKSSSKVACLNSQFLGLNLKRKNAFQASLSHAIGHSRVVCE 59
Query: 54 SFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
S S DE KQ+++DRW GLA DISDDQQDITRGKGMVDTL+Q + GT A+MSSY
Sbjct: 60 S---SSTEDETKQSAKDRWGGLATDISDDQQDITRGKGMVDTLYQGAIGMGTQNAIMSSY 116
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+YIS R ++ DNT DG YIAPAFM+K+++HI KNF++LPN+KVPLILGIWGGKGQGKS
Sbjct: 117 EYISTAQRNFAFDNTKDGFYIAPAFMEKLMIHIAKNFMSLPNIKVPLILGIWGGKGQGKS 176
Query: 174 FQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLD 221
FQCELVF+K+G+N GNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLD
Sbjct: 177 FQCELVFSKLGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLD 236
Query: 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 281
AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG+YN+EE PRVPIIVTGNDFSTLY
Sbjct: 237 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYNKEEIPRVPIIVTGNDFSTLY 296
Query: 282 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 341
APLIRDGRMEK+YWAPTREDRIGVC GIFRTD + +D+V+LVD FPGQSIDFFGALRAR
Sbjct: 297 APLIRDGRMEKYYWAPTREDRIGVCKGIFRTDGISDDDMVRLVDAFPGQSIDFFGALRAR 356
Query: 342 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 401
VYDDEVRKWI G+E IG +LVNS++GPPTF +P MT++KL+ YG MLV+EQENVKRVQ
Sbjct: 357 VYDDEVRKWIESTGVENIGSKLVNSRDGPPTFAKPAMTINKLMSYGYMLVKEQENVKRVQ 416
Query: 402 LADKYLSEAALGDANDDAIKNGSF 425
LA+KY+SEAALGDAN+DAIK G+F
Sbjct: 417 LAEKYMSEAALGDANEDAIKQGTF 440
>gi|168047151|ref|XP_001776035.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672693|gb|EDQ59227.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 308/412 (74%), Positives = 342/412 (83%), Gaps = 13/412 (3%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQD 85
S +P+S FLG KVS+ V+ KS +VV E + EK+ DRWAGL DISDDQQD
Sbjct: 27 STLPNSAFLG-CKSKVSANVTLGVAKGKS-RVVCEAEGEKKKKVDRWAGLGNDISDDQQD 84
Query: 86 ITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVH 145
I RGKGMVD LFQ + GT MSS+DY+S G R Y+ DN DGLYIAPAFMDK+++H
Sbjct: 85 IQRGKGMVDALFQGAVGLGTQVVTMSSWDYVSTGQRTYNFDNMKDGLYIAPAFMDKLIIH 144
Query: 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAK 194
I KNF+NLP +KVPLILGIWGGKGQGKSFQCELV AK+GIN GNAGEPAK
Sbjct: 145 IAKNFMNLPGIKVPLILGIWGGKGQGKSFQCELVMAKLGINPIVMSAGELESGNAGEPAK 204
Query: 195 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254
LIRQRYREAAD+IKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD+PTNV
Sbjct: 205 LIRQRYREAADVIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNV 264
Query: 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDN 314
QLPG+YN+EE PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DN
Sbjct: 265 QLPGVYNKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDN 324
Query: 315 VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFE 374
V +++ KLVD FPGQSIDFFGALRARVYDDEVRKWI+ G+E IGK LVNSK GPPTFE
Sbjct: 325 VSDDNVTKLVDQFPGQSIDFFGALRARVYDDEVRKWIAGTGVENIGKNLVNSKNGPPTFE 384
Query: 375 QPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 426
+P MT++KL+EYG MLVQEQ+NVKRVQLA++YLS AALGDAN DAIK G+FY
Sbjct: 385 KPAMTIEKLMEYGEMLVQEQQNVKRVQLAEQYLSSAALGDANADAIKQGTFY 436
>gi|410927500|gb|AFV93501.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 344
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 295/344 (85%), Positives = 317/344 (92%), Gaps = 11/344 (3%)
Query: 94 DTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNL 153
D+LFQAPM GTHYAVMSSY+YISQGL+ Y+LDN +DG YIAPAFMDK+VVHI+KNF++L
Sbjct: 1 DSLFQAPMNDGTHYAVMSSYEYISQGLKTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSL 60
Query: 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYRE 202
PN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYRE
Sbjct: 61 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 120
Query: 203 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 262
AADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+
Sbjct: 121 AADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK 180
Query: 263 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 322
EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFRTD V EDIVK
Sbjct: 181 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDGVRDEDIVK 240
Query: 323 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDK 382
LVDTFPGQSIDFFGALRARVYDDEVRKWISEVG+ +GK+LVNS+EGPPTFEQPKMT++K
Sbjct: 241 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGVASVGKKLVNSREGPPTFEQPKMTIEK 300
Query: 383 LLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 426
LLEYG MLV EQENVKRVQLADKYLSEAALG+AN+D+I G+FY
Sbjct: 301 LLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFY 344
>gi|168054092|ref|XP_001779467.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669152|gb|EDQ55745.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 300/403 (74%), Positives = 338/403 (83%), Gaps = 14/403 (3%)
Query: 38 LKKVSSKVSQQRILSKSFKVVSEYDE--EKQTSQDRWAGLAYDISDDQQDITRGKGMVDT 95
+ +VS+ V+ SKS +VV E ++ E DRWAGL DISDDQQDI RGKGMVD
Sbjct: 1 MSRVSANVTLGVASSKS-RVVCEAEKTGEPPKKVDRWAGLGNDISDDQQDIQRGKGMVDA 59
Query: 96 LFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPN 155
LFQ + GT MSS+DY+S G R Y+ DN DGLYIAPAFMDK+++HI KNF+NLP
Sbjct: 60 LFQGAVGLGTQVVTMSSWDYVSTGQRTYNFDNMKDGLYIAPAFMDKLIIHIAKNFMNLPG 119
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+KVPLILG+WGGKGQGKSFQCELV +K+GIN GNAGEPAKLIRQRYREAA
Sbjct: 120 IKVPLILGVWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAKLIRQRYREAA 179
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D+IKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD+PTNVQLPG+YN+EE
Sbjct: 180 DVIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNVQLPGVYNKEE 239
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLV 324
PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV +++ KLV
Sbjct: 240 IPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVSDDNVTKLV 299
Query: 325 DTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLL 384
D+FPGQSIDFFGALRARVYDDEVRKWIS G++ IGK+LVNSK+GPPTFE+P MT++KL+
Sbjct: 300 DSFPGQSIDFFGALRARVYDDEVRKWISATGVDNIGKKLVNSKDGPPTFEKPAMTIEKLM 359
Query: 385 EYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
EYG MLVQEQ+NVKRVQLAD+YLS AALGDAN DAI G+FYG
Sbjct: 360 EYGNMLVQEQQNVKRVQLADQYLSSAALGDANADAISQGTFYG 402
>gi|168052682|ref|XP_001778769.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669888|gb|EDQ56467.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 471
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 309/417 (74%), Positives = 339/417 (81%), Gaps = 20/417 (4%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRIL---SKSFKVVSEYDEEKQTSQDRWAGLAYDISDD 82
S VPSS F G SKVS L + +VV+E E +T DRWAGL DISDD
Sbjct: 20 STVPSSAFFG-----CKSKVSANGTLGIANGKSRVVAE-AESSKTKVDRWAGLGNDISDD 73
Query: 83 QQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKV 142
QQDI RGKGMVD LFQ GT A+MSS+ Y+SQG R YS+DN DGLYIAPAFMDK+
Sbjct: 74 QQDIQRGKGMVDALFQGAQGLGTQNAIMSSWGYVSQGQRTYSMDNIKDGLYIAPAFMDKL 133
Query: 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGE 191
V+HI KNF+NLP +KVPLILGIWGGKGQGKSFQCELV +K+GIN GNAGE
Sbjct: 134 VIHIAKNFMNLPGIKVPLILGIWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGE 193
Query: 192 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 251
PAKLIRQRYREAAD+IKKGKMC LFINDLDAG GRMGGTTQYTVNNQMVNATLMNIADNP
Sbjct: 194 PAKLIRQRYREAADVIKKGKMCALFINDLDAGTGRMGGTTQYTVNNQMVNATLMNIADNP 253
Query: 252 TNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 311
TNVQLP +YN+E PRVPIIVTGNDF TLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR
Sbjct: 254 TNVQLPSIYNKETIPRVPIIVTGNDFPTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 313
Query: 312 TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPP 371
DNV D+ KLVD FPGQSIDFFGALRARVYDDEVRKWI++VGIE IG+ LVNSK+GPP
Sbjct: 314 LDNVHDYDVAKLVDQFPGQSIDFFGALRARVYDDEVRKWIAKVGIENIGRNLVNSKDGPP 373
Query: 372 TFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGK 428
TF++P MT+DKL+EYG +LVQEQ+NVKRVQLADKYLS AL DAN DAI+ G+FYGK
Sbjct: 374 TFQKPAMTIDKLMEYGNLLVQEQQNVKRVQLADKYLSSDALVDANADAIQQGTFYGK 430
>gi|410927512|gb|AFV93502.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 344
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 292/344 (84%), Positives = 318/344 (92%), Gaps = 11/344 (3%)
Query: 94 DTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNL 153
D+LFQAPM GTHYAVMSSY+Y+SQGL+ Y+LDN +DG YIAPAFMDK+VVHITKNF++L
Sbjct: 1 DSLFQAPMNDGTHYAVMSSYEYLSQGLKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMSL 60
Query: 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYRE 202
PN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYRE
Sbjct: 61 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 120
Query: 203 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 262
AADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+
Sbjct: 121 AADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK 180
Query: 263 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 322
EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTD +P EDIVK
Sbjct: 181 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVK 240
Query: 323 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDK 382
LVDTFPGQSIDFFGALRARVYDDEVRKWIS+VG+ +GK+LVNS++GPPTFEQPKMT++K
Sbjct: 241 LVDTFPGQSIDFFGALRARVYDDEVRKWISDVGVAGVGKKLVNSRDGPPTFEQPKMTIEK 300
Query: 383 LLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 426
LLEYG MLV EQENVKRVQLADKYLSEAALG+AN+D+I G+FY
Sbjct: 301 LLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFY 344
>gi|3687652|gb|AAC62207.1| rubisco activase precursor [Datisca glomerata]
Length = 373
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 294/373 (78%), Positives = 330/373 (88%), Gaps = 13/373 (3%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEY 61
++ VST+GAVN + PL +N + L+P++ F G SLKK++S+++ RI + + K V++
Sbjct: 3 SSAVSTIGAVNRS-PLNLNNNGTGGLLPNTAFFGSSLKKMNSRLTNPRIAAGNIKAVADD 61
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR 121
DEEKQTS+DRW GLA+D SDDQQDITRGKGMVD+LFQAPM++GTHYAVMSSY+Y+S GLR
Sbjct: 62 DEEKQTSKDRWGGLAFDTSDDQQDITRGKGMVDSLFQAPMQTGTHYAVMSSYEYLSTGLR 121
Query: 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 181
QY LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFA
Sbjct: 122 QY-LDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 180
Query: 182 KMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 230
KMGIN GNAGEPAKLIRQR REAADIIKKGKM CLFINDLDAGAGR+GGT
Sbjct: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRCREAADIIKKGKMSCLFINDLDAGAGRLGGT 240
Query: 231 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 290
TQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300
Query: 291 EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 350
EKFYWAPTREDRIGVC+GIFR+DNV KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 301 EKFYWAPTREDRIGVCTGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 360
Query: 351 ISEVGIERIGKRL 363
IS VG++ +GK L
Sbjct: 361 ISGVGVQDVGKSL 373
>gi|13430334|gb|AAK25799.1|AF338238_1 rubisco activase [Zantedeschia aethiopica]
Length = 334
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 289/334 (86%), Positives = 313/334 (93%), Gaps = 11/334 (3%)
Query: 105 THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGI 164
TH V+SSY+YIS GLR ++LDNT++GLYIAPAFMDK+VVHITKNF+NLPN+K+PLILGI
Sbjct: 1 THNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPLILGI 60
Query: 165 WGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMC 213
WGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMC
Sbjct: 61 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMC 120
Query: 214 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT 273
CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRVPIIVT
Sbjct: 121 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVT 180
Query: 274 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSID 333
GNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC+GIFR+DNVPKED++KLVDTFPGQSID
Sbjct: 181 GNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSID 240
Query: 334 FFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 393
FFGALRARVYDDEVRKWI+E+G++ +GKRLVNS EGPPTF QPKMTLDKLLEYG MLVQE
Sbjct: 241 FFGALRARVYDDEVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQE 300
Query: 394 QENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
QENVKRVQLADKYLSEAALGDAN DAIK GSFYG
Sbjct: 301 QENVKRVQLADKYLSEAALGDANQDAIKTGSFYG 334
>gi|224284512|gb|ACN39989.1| unknown [Picea sitchensis]
Length = 368
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 289/391 (73%), Positives = 324/391 (82%), Gaps = 38/391 (9%)
Query: 85 DITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVV 144
DI RGKG VD+LFQAPM SGTH VMS+YDYIS R Y DNT+DG YIAP+FMDK++V
Sbjct: 2 DIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLV 61
Query: 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPA 193
HI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCELVFAK+GIN G+AGEPA
Sbjct: 62 HISKNFMNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPA 121
Query: 194 KLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 253
KL+R+RYREA+DI+KKGKMC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTN
Sbjct: 122 KLLRKRYREASDIVKKGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTN 181
Query: 254 VQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTD 313
VQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFR D
Sbjct: 182 VQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRAD 241
Query: 314 NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTF 373
NV +D+V+LVDTFPGQSIDFFGALRARVYDDEVRKW++ GI+ IGK+L+NSKEGPPTF
Sbjct: 242 NVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGTGIQNIGKKLINSKEGPPTF 301
Query: 374 EQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQV 433
E+P MT++KLLEYG MLV EQ+NVKRVQL D V
Sbjct: 302 EKPAMTIEKLLEYGNMLVGEQDNVKRVQLVD---------------------------NV 334
Query: 434 KVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
+PVPEGCTDP AANYDPTARSD+GSC Y+F
Sbjct: 335 NLPVPEGCTDPRAANYDPTARSDNGSCEYEF 365
>gi|168047149|ref|XP_001776034.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672692|gb|EDQ59226.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 455
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 298/431 (69%), Positives = 335/431 (77%), Gaps = 34/431 (7%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQD 85
S +PSS G S KVS V+ KS +VV E + EK+ DRWAGL DISDDQQD
Sbjct: 28 STLPSSALFGCS-SKVSVNVTLGVAKGKS-RVVCEAEGEKKKV-DRWAGLGNDISDDQQD 84
Query: 86 ITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVH 145
I RGKGMVD LFQ GT MSS+DY+S R Y+ DNT DGLYIAPAFMDK+V+H
Sbjct: 85 IQRGKGMVDALFQGATGLGTQVVTMSSWDYVSTAQRTYNFDNTSDGLYIAPAFMDKLVIH 144
Query: 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------- 186
+ KNF+NLP +KVPLILG+WGGKGQGKSFQ ELV K+GIN
Sbjct: 145 VCKNFMNLPGIKVPLILGVWGGKGQGKSFQSELVMKKLGINSGRGLLSSLVTLSFEISMC 204
Query: 187 ------------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYT 234
GNAGEPAKLIRQRYREAA II+KGKMCCLFINDLDAGAGRMGGTTQYT
Sbjct: 205 HPIMMSAGELESGNAGEPAKLIRQRYREAAAIIQKGKMCCLFINDLDAGAGRMGGTTQYT 264
Query: 235 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 294
VNNQMVNATLMNIAD+PTNVQLPG+YN+EE PRVPIIVTGNDFSTLYAPLIRDGRMEKFY
Sbjct: 265 VNNQMVNATLMNIADSPTNVQLPGVYNKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 324
Query: 295 WAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV 354
WAPTREDRIGVC GIFR DN+ +++ K+VD FPGQSIDFFGALRARVYDDEVR WIS
Sbjct: 325 WAPTREDRIGVCKGIFRLDNISDDNVTKMVDMFPGQSIDFFGALRARVYDDEVRNWISAT 384
Query: 355 GIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGD 414
G+E +GK LVNSK+GPP F++P MT++KL+EYG+MLVQEQ+NVKRVQLA++YL+ AALGD
Sbjct: 385 GVENLGKNLVNSKDGPPEFKKPAMTIEKLMEYGQMLVQEQQNVKRVQLAEQYLNSAALGD 444
Query: 415 ANDDAIKNGSF 425
AN DAIK G F
Sbjct: 445 ANADAIKQGKF 455
>gi|108864712|gb|ABG22613.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 348
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 282/333 (84%), Positives = 307/333 (92%), Gaps = 11/333 (3%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 13 AVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGG 72
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLF
Sbjct: 73 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 132
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGND
Sbjct: 133 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGND 192
Query: 277 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 336
FSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFG
Sbjct: 193 FSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFG 252
Query: 337 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 396
ALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQEN
Sbjct: 253 ALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQEN 312
Query: 397 VKRVQLADKYLSEAALGDANDDAIKNGSFYGKA 429
VKRVQLA++YLSEAALGDAN DA+K GSFYG A
Sbjct: 313 VKRVQLAEQYLSEAALGDANSDAMKTGSFYGSA 345
>gi|62733168|gb|AAX95285.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|108864711|gb|ABG22612.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 357
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 282/333 (84%), Positives = 307/333 (92%), Gaps = 11/333 (3%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 22 AVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGG 81
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLF
Sbjct: 82 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 141
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGND
Sbjct: 142 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGND 201
Query: 277 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 336
FSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFG
Sbjct: 202 FSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFG 261
Query: 337 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 396
ALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQEN
Sbjct: 262 ALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQEN 321
Query: 397 VKRVQLADKYLSEAALGDANDDAIKNGSFYGKA 429
VKRVQLA++YLSEAALGDAN DA+K GSFYG A
Sbjct: 322 VKRVQLAEQYLSEAALGDANSDAMKTGSFYGSA 354
>gi|297612474|ref|NP_001068555.2| Os11g0707000 [Oryza sativa Japonica Group]
gi|255680411|dbj|BAF28918.2| Os11g0707000 [Oryza sativa Japonica Group]
Length = 350
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 277/326 (84%), Positives = 300/326 (92%), Gaps = 11/326 (3%)
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 22 YLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSF 81
Query: 175 QCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223
QCELVFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG
Sbjct: 82 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 141
Query: 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283
AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAP
Sbjct: 142 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAP 201
Query: 284 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 343
LIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFGALRARVY
Sbjct: 202 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVY 261
Query: 344 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 403
DDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQENVKRVQLA
Sbjct: 262 DDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLA 321
Query: 404 DKYLSEAALGDANDDAIKNGSFYGKA 429
++YLSEAALGDAN DA+K GSFYG A
Sbjct: 322 EQYLSEAALGDANSDAMKTGSFYGSA 347
>gi|115392208|gb|ABI96906.1| chloroplast ribulose-1,5-bisphosphate carboxylase activase
[Triticum aestivum]
Length = 360
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 274/351 (78%), Positives = 310/351 (88%), Gaps = 11/351 (3%)
Query: 52 SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMS 111
+ F V++ + +++ + D+W GLAYDISDDQQDITRGKG+VD+LFQAP GTH AV+S
Sbjct: 10 ANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 69
Query: 112 SYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQG 171
SY+Y+SQGL++Y DNT+ G YIAPAFMDK+VVH++KNF+ LPN+K+P ILGIWGGKGQG
Sbjct: 70 SYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPRILGIWGGKGQG 129
Query: 172 KSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 220
KSFQCELVFAKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDL
Sbjct: 130 KSFQCELVFAKMGINPIMLSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDL 189
Query: 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 280
DAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+EENPRVPI+VTGNDFSTL
Sbjct: 190 DAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTL 249
Query: 281 YAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRA 340
YAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E +VK+VDTFPGQSIDFFGALRA
Sbjct: 250 YAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRA 309
Query: 341 RVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 391
RV DDEVRKW++ GIE IGKRLVNS++GP TFEQPKMT++KLLEYG MLV
Sbjct: 310 RVNDDEVRKWVTSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 360
>gi|94549022|gb|ABF38996.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Pachysandra terminalis]
Length = 314
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 271/313 (86%), Positives = 293/313 (93%), Gaps = 11/313 (3%)
Query: 163 GIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGK 211
GIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGK
Sbjct: 2 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGK 61
Query: 212 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
MCCLFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVP+I
Sbjct: 62 MCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVI 121
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQS 331
VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC+GIF+ DNVP ED+VK+VDTFPGQS
Sbjct: 122 VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFKADNVPPEDVVKIVDTFPGQS 181
Query: 332 IDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 391
IDFFGALRARVYDDEVRKWIS VG++++GK+LVNS+EGPPTFEQPKMT++KLLEYG MLV
Sbjct: 182 IDFFGALRARVYDDEVRKWISGVGVDKVGKKLVNSREGPPTFEQPKMTVEKLLEYGNMLV 241
Query: 392 QEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDP 451
QEQENVKRVQLADKYLSEAALGDAN DAI +G+FYGKAAQQVK+PVPEGCTDP+A N+DP
Sbjct: 242 QEQENVKRVQLADKYLSEAALGDANKDAINSGTFYGKAAQQVKLPVPEGCTDPSAQNFDP 301
Query: 452 TARSDDGSCNYQF 464
TARSDDGSC YQ
Sbjct: 302 TARSDDGSCLYQL 314
>gi|312064704|gb|ADQ27442.1| chloroplast Rubisco activase [Solanum tuberosum]
Length = 359
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 268/360 (74%), Positives = 309/360 (85%), Gaps = 14/360 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MAA VST+GA + A PL +N S + VPS+ F GKSLK+V +K +S ++ +++ ++V+
Sbjct: 1 MAATVSTIGAASKA-PLSLNNSVAGTSVPSTAFFGKSLKRVYAKGISSPKVSNRNLRIVA 59
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E DE K+T +DRW GL + SDDQQDI RGKGMVD+LFQAP +GTH+A+M+SY+Y+SQ
Sbjct: 60 QEIDESKETKEDRWKGLYENASDDQQDIARGKGMVDSLFQAPTGTGTHHAIMNSYEYVSQ 119
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
L+ Y +DN LDG YIAP+FMDK+ VHITKNFL+LPN+KVPLILG+WGGKGQGKSFQCEL
Sbjct: 120 ALKTYQMDNKLDGFYIAPSFMDKLAVHITKNFLSLPNIKVPLILGVWGGKGQGKSFQCEL 179
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VF KMGIN GNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRM
Sbjct: 180 VFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRM 239
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENCRVPIIVTGNDFSTLYAPLIRD 299
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTREDRIGVC GIFRTDNVP+E +VK+VD+FPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEV 359
>gi|410927414|gb|AFV93495.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 296
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 263/294 (89%), Positives = 274/294 (93%), Gaps = 11/294 (3%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+YISQGLR Y LDN +DG Y
Sbjct: 1 GLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYISQGLRTYDLDNNMDGFY 60
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------- 186
IAPAFMDK+VVHITKN++ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN
Sbjct: 61 IAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 120
Query: 187 ----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 242
GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 121 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 180
Query: 243 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 302
TLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR
Sbjct: 181 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 240
Query: 303 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGI 356
IGVC+GIFRTDNVP +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI EVG+
Sbjct: 241 IGVCTGIFRTDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGEVGV 294
>gi|410927420|gb|AFV93496.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 296
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 261/294 (88%), Positives = 274/294 (93%), Gaps = 11/294 (3%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+Y+SQGLR Y LDN +DG Y
Sbjct: 1 GLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYLSQGLRTYDLDNNMDGFY 60
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------- 186
IAPAFMDK+VVHITKNF+ LPN+KVPLILG+WGGKGQGKSFQCELVFAKMGIN
Sbjct: 61 IAPAFMDKLVVHITKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAG 120
Query: 187 ----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 242
GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 121 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 180
Query: 243 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 302
TLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR
Sbjct: 181 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 240
Query: 303 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGI 356
IGVC+GIFRTDNVP +D+VKLVDTFPGQSIDFFGALRARVYDDEVRKWI EVG+
Sbjct: 241 IGVCTGIFRTDNVPVDDLVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGEVGV 294
>gi|116789808|gb|ABK25395.1| unknown [Picea sitchensis]
Length = 310
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 250/310 (80%), Positives = 285/310 (91%), Gaps = 11/310 (3%)
Query: 129 LDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-- 186
+DG YIAP+FMDK++VHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCELVFAK+GIN
Sbjct: 1 MDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPI 60
Query: 187 ---------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN 237
G+AGEPAKL+R+RYREA+DI+KKGKMC LFINDLDAGAGRMG TTQYTVNN
Sbjct: 61 MMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRMGSTTQYTVNN 120
Query: 238 QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
QMVNATLMNIADNPTNVQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAP
Sbjct: 121 QMVNATLMNIADNPTNVQLPGMYNRQDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAP 180
Query: 298 TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE 357
TR+DRIGVC GIFR DNV +D+V+LVDTFPGQSIDFFGALRARVYDDEVRKW++ GI+
Sbjct: 181 TRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGTGIQ 240
Query: 358 RIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDAND 417
IGK+L+NSKEGPPTFE+P MT++KLLEYG MLV EQ+NVKR+QLADKY+SEAALGDAN+
Sbjct: 241 NIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRLQLADKYMSEAALGDANE 300
Query: 418 DAIKNGSFYG 427
D+IK G+FYG
Sbjct: 301 DSIKRGTFYG 310
>gi|308368980|gb|AAG22094.3| ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
Length = 305
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 253/304 (83%), Positives = 279/304 (91%), Gaps = 11/304 (3%)
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-------- 185
IA FMDK+VVH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGI
Sbjct: 1 IAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAG 60
Query: 186 ---NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 242
+GNAGEPAKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 61 ELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNA 120
Query: 243 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 302
TLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR
Sbjct: 121 TLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 180
Query: 303 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR 362
IGVC GIFRTD V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+SE G+E I ++
Sbjct: 181 IGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARK 240
Query: 363 LVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKN 422
LVNSKEGPPTFEQPK+T++KLLEYG MLV EQENVKRVQLADKYL+EAALG+AN+DA+K
Sbjct: 241 LVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKT 300
Query: 423 GSFY 426
GSF+
Sbjct: 301 GSFF 304
>gi|356624532|pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
gi|356624733|pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624734|pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624735|pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624736|pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624737|pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624738|pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/293 (86%), Positives = 269/293 (91%), Gaps = 11/293 (3%)
Query: 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
+LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELVF KM
Sbjct: 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKM 60
Query: 184 GIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 232
GIN GNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMGGTTQ
Sbjct: 61 GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQ 120
Query: 233 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
YTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct: 121 YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 180
Query: 293 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 352
FYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDDEVRKW+S
Sbjct: 181 FYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240
Query: 353 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADK
Sbjct: 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293
>gi|384253108|gb|EIE26583.1| Rubisco activase [Coccomyxa subellipsoidea C-169]
Length = 421
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 257/403 (63%), Positives = 312/403 (77%), Gaps = 19/403 (4%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRILSK---SFKVVSEYDEEKQTSQDRWAGLAYDISDD 82
S+ S F G+S+ S +++ + + ++ KV ++ K + RW GL D+SDD
Sbjct: 12 SMELGSSFTGRSVASPSGRIAGRPLRTQVQNGAKVFAKKTGSK-SQVGRWKGLDEDVSDD 70
Query: 83 QQDITRGKGMVDTLFQA--PMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMD 140
QQDITRG+ MVD+L+Q GTH A++SS +Y+SQ Q +L+N DG YI+P F+D
Sbjct: 71 QQDITRGRNMVDSLYQGFGVGAGGTHNAILSSEEYLSQA--QRTLNNIEDGFYISPPFLD 128
Query: 141 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189
K+ +H+ KNFL+LP +KVPLILGIWGGKGQGK+FQC L F K+ IN GNA
Sbjct: 129 KISIHVAKNFLDLPKIKVPLILGIWGGKGQGKTFQCNLAFKKLDINPIVMSAGELESGNA 188
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GEPAKL+RQRYREA+D+IKKGKM LFINDLDAGAGRMG TQYTVNNQMVNATLMNIAD
Sbjct: 189 GEPAKLVRQRYREASDVIKKGKMSSLFINDLDAGAGRMGAGTQYTVNNQMVNATLMNIAD 248
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGI 309
NPTNVQLPG+Y QEE PRVP+I TGNDFSTLYAPLIRDGRMEKFYWAP+R+DR+GVC GI
Sbjct: 249 NPTNVQLPGVYKQEEIPRVPVICTGNDFSTLYAPLIRDGRMEKFYWAPSRDDRVGVCMGI 308
Query: 310 FRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEG 369
F+ D V + D+ LVDTFPGQSIDFFGALRARVYDD+VR+++S +G+E IGKRLVNS+E
Sbjct: 309 FQHDGVNRTDVEHLVDTFPGQSIDFFGALRARVYDDKVREFVSTIGLENIGKRLVNSREA 368
Query: 370 PPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAAL 412
TFE+P+M L+ LL+YG +LV EQENVKRVQLAD YLS A L
Sbjct: 369 KVTFEKPEMDLNTLLKYGNLLVDEQENVKRVQLADSYLSGAEL 411
>gi|342360007|gb|AEL29575.1| chloroplast rubisco activase [Chlorella pyrenoidosa]
Length = 413
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/369 (67%), Positives = 296/369 (80%), Gaps = 16/369 (4%)
Query: 66 QTSQDRWAGLAYDI--SDDQQDITRGKGMVDTLFQAPMESG-THYAVMSSYDYISQGLRQ 122
+T + RW G+ D+ SDDQQDI RG+ MVD+LFQ G TH A+MSS DY+S R
Sbjct: 41 KTQRGRWRGMDADVDMSDDQQDIARGRQMVDSLFQGGGGMGGTHNAIMSSTDYLSTAARN 100
Query: 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK 182
+ +N DG YI+PAF+DK+ +H+ KNF++LP +KVPLILGIWGGKGQGK+FQC L + K
Sbjct: 101 F--NNIEDGFYISPAFLDKMSIHVAKNFMDLPKIKVPLILGIWGGKGQGKTFQCNLAYKK 158
Query: 183 MGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 231
+GI+ GNAGEPAKLIRQRYREA+DIIKKG+MC LFINDLDAGAGRMG T
Sbjct: 159 LGISPIVMSAGELESGNAGEPAKLIRQRYREASDIIKKGRMCSLFINDLDAGAGRMGDAT 218
Query: 232 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 291
QYTVNNQMVNATLMNIAD+PTNVQLPG+Y EE PRVPI+ TGNDFSTLYAPLIRDGRME
Sbjct: 219 QYTVNNQMVNATLMNIADSPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRME 278
Query: 292 KFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 351
K+YW PTREDRIGVC GIF+ DNV + D+ KLVD FPGQSIDFFGALRARVYDD+VR+WI
Sbjct: 279 KYYWNPTREDRIGVCMGIFQHDNVDRADVEKLVDAFPGQSIDFFGALRARVYDDKVREWI 338
Query: 352 SEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAA 411
+ G+E IGKRL+NS+EG FE+P M L L++YG MLV+EQENVKRVQLAD+Y+S AA
Sbjct: 339 TGTGVENIGKRLINSREGKVEFEKPSMNLSTLMQYGNMLVEEQENVKRVQLADEYMSGAA 398
Query: 412 LGDANDDAI 420
L ++ ++
Sbjct: 399 LAGSSGSSL 407
>gi|307111891|gb|EFN60125.1| hypothetical protein CHLNCDRAFT_133490 [Chlorella variabilis]
Length = 419
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/396 (63%), Positives = 305/396 (77%), Gaps = 17/396 (4%)
Query: 43 SKVSQQRILSKSFKVVSEYDEEKQTS-QDRWAGL--AYDISDDQQDITRGKGMVDTLFQA 99
++V++Q + + +F + ++ S + RW G+ D SDDQQDI+RG+ MVD+LFQ
Sbjct: 22 ARVTRQNVSNGAFATMRRSSSSQRPSQKGRWKGMDAGMDASDDQQDISRGREMVDSLFQG 81
Query: 100 PME-SGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKV 158
GTH A++SS DY+S R + +N DG YI+PAF+DK+ +H+ KNFL+LP +KV
Sbjct: 82 GQGMGGTHNAILSSQDYLSTAQRNF--NNIEDGFYISPAFLDKISIHVAKNFLDLPKIKV 139
Query: 159 PLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADII 207
PLILGIWGGKGQGK+FQC L + K+GI+ GNAGEPAKLIRQRYREA+DII
Sbjct: 140 PLILGIWGGKGQGKTFQCNLAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYREASDII 199
Query: 208 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267
KKG+M LFINDLDAGAGRMG TQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PR
Sbjct: 200 KKGRMSSLFINDLDAGAGRMGDATQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPR 259
Query: 268 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTF 327
VPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDR+GVC GIF+ DNV + D+ LVD F
Sbjct: 260 VPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRVGVCMGIFQHDNVDRADVETLVDAF 319
Query: 328 PGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYG 387
PGQSIDFFGALRARVYDD+VR+WI G+E IGKRLVNS+EG F++P M L L+ YG
Sbjct: 320 PGQSIDFFGALRARVYDDKVREWIQGTGVENIGKRLVNSREGKVEFDKPPMPLSTLMNYG 379
Query: 388 RMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNG 423
+LV+EQENVKRVQLAD+Y+S AAL ++ ++ G
Sbjct: 380 NLLVEEQENVKRVQLADEYMSGAALAGSSGSSLPEG 415
>gi|302840850|ref|XP_002951971.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
gi|300262872|gb|EFJ47076.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
Length = 409
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/385 (66%), Positives = 300/385 (77%), Gaps = 21/385 (5%)
Query: 42 SSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDI--SDDQQDITRGKGMVDTLFQA 99
S++V+ + + +VV+ ++ RW + D+ SDDQQDITRG+ MVD LFQ
Sbjct: 17 SARVAARSVRRAQLQVVAA----SRSQVGRWRNIDADVDTSDDQQDITRGRQMVDDLFQG 72
Query: 100 PMESG-THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKV 158
+G TH AV+SS +Y+SQ + S +N DG YI+PAF+DK+ +HI KNF++LP +KV
Sbjct: 73 GFGAGGTHNAVLSSTEYLSQA--RASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKV 130
Query: 159 PLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADII 207
PLILGIWGGKGQGK+FQC L + K+GI+ GNAGEPAKLIR RYREA+DII
Sbjct: 131 PLILGIWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRTRYREASDII 190
Query: 208 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267
KKGKMC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PR
Sbjct: 191 KKGKMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPR 250
Query: 268 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTF 327
VPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + D+ +LVDTF
Sbjct: 251 VPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVSRGDVERLVDTF 310
Query: 328 PGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYG 387
PGQSIDFFGALRARVYDD VRKWI+EVGIE IG +LVN ++ +F + M+LD LL+YG
Sbjct: 311 PGQSIDFFGALRARVYDDMVRKWIAEVGIEGIGSKLVNGRQ-KVSFPKVSMSLDVLLKYG 369
Query: 388 RMLVQEQENVKRVQLADKYLSEAAL 412
R LV EQENVKRVQLAD YLS A L
Sbjct: 370 RALVDEQENVKRVQLADAYLSGAEL 394
>gi|116791872|gb|ABK26141.1| unknown [Picea sitchensis]
Length = 363
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/345 (71%), Positives = 280/345 (81%), Gaps = 13/345 (3%)
Query: 1 MAAVVSTVGA--VNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVV 58
MA + VG+ V++ LPL +S VPS+ F G LKK S S + FKVV
Sbjct: 1 MATAAAAVGSITVSSNLPLSSGQASILKTVPSTGFFGCGLKKTSFNASHTFTKANHFKVV 60
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+E DE KQT +D+W GLA+D SDDQ DI RGKG VD+LFQAPM SGTH VMS+YDYIS
Sbjct: 61 AEIDEGKQTDKDKWKGLAFDESDDQMDIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYIST 120
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
R Y DNT+DG YIAP+FMDK++VHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 121 AQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCEL 180
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAK+GIN G+AGEPAKL+R+RYREA+DI+KKGKMC LFINDL+AGAGRM
Sbjct: 181 VFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLEAGAGRM 240
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
G TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRD
Sbjct: 241 GSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRD 300
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSI 332
GRMEKFYWAPTR+DRIGVC GIFR DNV +D+V+LVDTFPGQSI
Sbjct: 301 GRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSI 345
>gi|1805719|emb|CAA71667.1| Rubisco activase [Chlorococcum littorale]
Length = 403
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/389 (62%), Positives = 298/389 (76%), Gaps = 18/389 (4%)
Query: 38 LKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGL--AYDISDDQQDITRGKGMVDT 95
+K + K + + K+ +V + + Q RWA + D+SDDQQDITRG+ MVD+
Sbjct: 5 MKNTAFKATGAKTAPKAVRVPACKASKSQAG--RWAAIDAGNDMSDDQQDITRGRDMVDS 62
Query: 96 LFQAPMESG-THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLP 154
LFQ P G TH AV+SS DY+S R + +N DG YI+PAF+DK+ +H+ KNF++LP
Sbjct: 63 LFQGPGSGGGTHSAVLSSEDYLSTASRNF--NNVEDGFYISPAFLDKMTIHVAKNFMDLP 120
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREA 203
+KVPLILGIWGGKGQGK+FQC L + K+GI+ GNAGEPAKLIRQRYREA
Sbjct: 121 KIKVPLILGIWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYREA 180
Query: 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
+D +KKGKMC LFINDLDAGAGRMG TQYTVNNQMVNATLMNIADNPTNVQLPG+Y +
Sbjct: 181 SDSVKKGKMCSLFINDLDAGAGRMGMGTQYTVNNQMVNATLMNIADNPTNVQLPGVYKEV 240
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 323
+ PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + ++ L
Sbjct: 241 QIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVNRGEVEVL 300
Query: 324 VDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKL 383
VD FPGQSIDFFGALRARVYDD+VR+++ G+E + KRL+NS+EG FE+P M LD L
Sbjct: 301 VDAFPGQSIDFFGALRARVYDDKVREFVKNTGVENLSKRLINSREGKVVFEKPSMNLDIL 360
Query: 384 LEYGRMLVQEQENVKRVQLADKYLSEAAL 412
++YG+ L EQENVKRVQLA++Y+ A+L
Sbjct: 361 MKYGKFLTNEQENVKRVQLAEEYMMGASL 389
>gi|159468147|ref|XP_001692244.1| rubisco activase [Chlamydomonas reinhardtii]
gi|38532373|gb|AAR23425.1| rubisco activase [Chlamydomonas reinhardtii]
gi|158278430|gb|EDP04194.1| rubisco activase [Chlamydomonas reinhardtii]
Length = 408
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/384 (63%), Positives = 297/384 (77%), Gaps = 21/384 (5%)
Query: 43 SKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME 102
++V+ + + +VV+ KQ + R D SDDQQDITRG+ MVD LFQ
Sbjct: 18 ARVATRSVRRAQLQVVAS--SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFG 75
Query: 103 SG-THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI 161
+G TH AV+SS +Y+SQ + S +N DG YI+PAF+DK+ +HI KNF++LP +KVPLI
Sbjct: 76 AGGTHNAVLSSQEYLSQS--RASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLI 133
Query: 162 LGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIKKG 210
LGIWGGKGQGK+FQC L + K+GI +GNAGEPAKLIR RYREA+DIIKKG
Sbjct: 134 LGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKG 193
Query: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270
+MC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PRVPI
Sbjct: 194 RMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPI 253
Query: 271 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 330
+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + ++ LVDTFPGQ
Sbjct: 254 VCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQ 313
Query: 331 SIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLD--KLLEYGR 388
SIDFFGALRARVYDD VR+WI++ G+++IG++LVN+++ PK+++D L++YG+
Sbjct: 314 SIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ---KVAMPKVSMDLNVLIKYGK 370
Query: 389 MLVQEQENVKRVQLADKYLSEAAL 412
LV EQENVKRVQLAD YLS A L
Sbjct: 371 SLVDEQENVKRVQLADAYLSGAEL 394
>gi|154259484|gb|ABS72022.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Olea europaea]
Length = 261
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/260 (89%), Positives = 249/260 (95%)
Query: 201 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260
REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY
Sbjct: 1 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 60
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDI 320
N+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD+VP E +
Sbjct: 61 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDDVPDEHV 120
Query: 321 VKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTL 380
VKLVD+FPGQSIDFFGALRARVYDDEVRKWI VG++ IGK+LVNS+EGPPTF+QPKM+L
Sbjct: 121 VKLVDSFPGQSIDFFGALRARVYDDEVRKWIGGVGVDNIGKKLVNSREGPPTFDQPKMSL 180
Query: 381 DKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEG 440
+KLLEYG MLVQEQENVKRVQLAD+YLS AALGDAN DA+++GSFYGKAAQQV VPVPEG
Sbjct: 181 EKLLEYGNMLVQEQENVKRVQLADQYLSSAALGDANKDAMQSGSFYGKAAQQVGVPVPEG 240
Query: 441 CTDPAAANYDPTARSDDGSC 460
CTDP A+N+DPTARSDDGSC
Sbjct: 241 CTDPNASNFDPTARSDDGSC 260
>gi|132167|sp|P23489.1|RCA_CHLRE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|167434|gb|AAA33091.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase
[Chlamydomonas reinhardtii]
gi|227783|prf||1710353A RuBisCO activase
Length = 408
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 245/384 (63%), Positives = 297/384 (77%), Gaps = 21/384 (5%)
Query: 43 SKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME 102
++V+ + + +VV+ KQ + R D SDDQQDITRG+ MVD LFQ
Sbjct: 18 ARVATRSVRRAQLQVVAP--SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFG 75
Query: 103 SG-THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI 161
+G TH AV+SS +Y+SQ + S +N DG YI+PAF+DK+ +HI KNF++LP +KVPLI
Sbjct: 76 AGGTHNAVLSSQEYLSQS--RASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLI 133
Query: 162 LGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIKKG 210
LGIWGGKGQGK+FQC L + K+GI +GNAGEPAKLIR RYREA+DIIKKG
Sbjct: 134 LGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKG 193
Query: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270
+MC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PRVPI
Sbjct: 194 RMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPI 253
Query: 271 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 330
+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + ++ LVDTFPGQ
Sbjct: 254 VCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQ 313
Query: 331 SIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLD--KLLEYGR 388
SIDFFGALRARVYDD VR+WI++ G+++IG++LVN+++ PK+++D L++YG+
Sbjct: 314 SIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ---KVAMPKVSMDLNVLIKYGK 370
Query: 389 MLVQEQENVKRVQLADKYLSEAAL 412
LV EQENVKRVQLAD YLS A L
Sbjct: 371 SLVDEQENVKRVQLADAYLSGAEL 394
>gi|412985893|emb|CCO17093.1| predicted protein [Bathycoccus prasinos]
Length = 480
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/392 (62%), Positives = 300/392 (76%), Gaps = 20/392 (5%)
Query: 44 KVSQQRILSKSF--KVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPM 101
+V+ + + K+F VS + RW G+ DISDDQQDI RG+ MVD+ FQ
Sbjct: 82 QVNTRSLAGKNFIGSKVSSVTNGSKVQMSRWKGMDEDISDDQQDIARGRDMVDSKFQGGF 141
Query: 102 -ESGTHYAVMSSYDYISQGLRQYSLDN-TLDG--LYIAPAFMDKVVVHITKNFLNLPNVK 157
GTH AVMSS DYISQG Q +LDN ++DG YI+P+F+DK VH+ KNF++LP +K
Sbjct: 142 GMGGTHNAVMSSTDYISQG--QKNLDNLSVDGNNYYISPSFLDKTAVHVAKNFMDLPKIK 199
Query: 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADI 206
VPLILG+WGGKGQGK+FQ L+FAK+GI+ GNAGEPAKL+RQRYREA+DI
Sbjct: 200 VPLILGVWGGKGQGKTFQSNLIFAKLGISPIVMSAGELESGNAGEPAKLVRQRYREASDI 259
Query: 207 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
+KKGK+ LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG Y E P
Sbjct: 260 VKKGKLSTLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVVEIP 319
Query: 267 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDT 326
RVP+I TGNDFSTLYAPL+RDGRM+KFYWAPT EDR+G+ +GIF+ D V + D+ LV+
Sbjct: 320 RVPVIATGNDFSTLYAPLVRDGRMDKFYWAPTFEDRVGIANGIFKADGVDEADVRSLVEA 379
Query: 327 FPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPP-TFEQPKMTLDKLLE 385
F GQSIDFFGALRARVYDD+VR++I E+G+E IGKRLVN ++G +F+ P M+++ LLE
Sbjct: 380 FDGQSIDFFGALRARVYDDKVREFIQEMGLENIGKRLVNVRKGEEVSFDAPAMSIEILLE 439
Query: 386 YGRMLVQEQENVKRVQLADKYLSEAALGDAND 417
YG+ L EQENVKRVQLAD YL A L +++
Sbjct: 440 YGKALENEQENVKRVQLADAYLDGAVLAGSDE 471
>gi|145346050|ref|XP_001417509.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577736|gb|ABO95802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 415
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/370 (65%), Positives = 285/370 (77%), Gaps = 15/370 (4%)
Query: 58 VSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQ-APMESGTHYAVMSSYDYI 116
VS + RW G+ DISDDQQDI RG+ MVD+ FQ A GTH AVMSS DY+
Sbjct: 31 VSSVSNGSKVEMSRWKGMDMDISDDQQDIARGRNMVDSKFQGATGIGGTHNAVMSSQDYL 90
Query: 117 SQGLRQYSL-DN-TLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
S G++ YS DN T + YI+P++MDKV+VH+ KNF+ LP +KVP+ILG+WGGKGQGK+F
Sbjct: 91 SAGMKTYSAHDNITTENFYISPSYMDKVIVHVAKNFMKLPKIKVPVILGVWGGKGQGKTF 150
Query: 175 QCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223
Q +L+F K+GI+ GNAGEPAKL+RQRYREA+DI+KKG+M LFINDLDAG
Sbjct: 151 QSDLIFKKLGISPIVMSAGELESGNAGEPAKLVRQRYREASDIVKKGRMSTLFINDLDAG 210
Query: 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283
AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG Y E PRVPII TGNDFSTLYAP
Sbjct: 211 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVIEIPRVPIIATGNDFSTLYAP 270
Query: 284 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 343
L+RDGRM+KFYW+PTREDR+G+ +GIF D + KED+ LVDTF GQSIDFFGALR+RVY
Sbjct: 271 LVRDGRMDKFYWSPTREDRVGIANGIFMADGIEKEDVEVLVDTFEGQSIDFFGALRSRVY 330
Query: 344 DDEVRKWISEVGIERIGKRLVNSKEGPPT-FEQPKMTLDKLLEYGRMLVQEQENVKRVQL 402
DD VR +I EVG E +G RL+N ++G F PKMTL+ LL YG+ L EQEN+KR+QL
Sbjct: 331 DDLVRDFILEVGYEALGPRLINPRKGEEVNFNPPKMTLEVLLAYGKELENEQENIKRIQL 390
Query: 403 ADKYLSEAAL 412
AD YL A L
Sbjct: 391 ADAYLDGAVL 400
>gi|149392725|gb|ABR26165.1| ribulose bisphosphate carboxylase/oxygenase activase [Oryza sativa
Indica Group]
Length = 273
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/270 (86%), Positives = 250/270 (92%), Gaps = 11/270 (4%)
Query: 171 GKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 219
GKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND
Sbjct: 1 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 60
Query: 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 279
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFST
Sbjct: 61 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFST 120
Query: 280 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 339
LYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFGALR
Sbjct: 121 LYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALR 180
Query: 340 ARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 399
ARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQENVKR
Sbjct: 181 ARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKR 240
Query: 400 VQLADKYLSEAALGDANDDAIKNGSFYGKA 429
VQLA++YLSEAALGDAN DA+K GSFYG A
Sbjct: 241 VQLAEQYLSEAALGDANSDAMKTGSFYGSA 270
>gi|255075671|ref|XP_002501510.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
gi|226516774|gb|ACO62768.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
Length = 413
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 241/361 (66%), Positives = 278/361 (77%), Gaps = 14/361 (3%)
Query: 65 KQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME-SGTHYAVMSSYDYISQGLRQY 123
K RW G+ DISDDQQDI RG+ MVD+ FQ GTH AVMSS DY+S G +
Sbjct: 39 KTVMMSRWKGMDEDISDDQQDIARGRNMVDSKFQGGFGLGGTHNAVMSSSDYVSDGFKDV 98
Query: 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
S + T +G YI+ FMD+ VHI KNF++LP +KVPLILG+WGGKGQGK+FQ L+F K+
Sbjct: 99 S-NMTDEGYYISKGFMDRFCVHIAKNFMDLPKIKVPLILGVWGGKGQGKTFQSMLIFKKL 157
Query: 184 GI-----------NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 232
G+ +GNAGEPAKLIRQRYREA+DIIKKG+M LFINDLDAGAGRMGG+TQ
Sbjct: 158 GVGPIVMSAGELESGNAGEPAKLIRQRYREASDIIKKGRMSTLFINDLDAGAGRMGGSTQ 217
Query: 233 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
YTVNNQMVNATLMN+ADNPTNVQLPG Y EE PRVPII TGNDFSTLYAPLIRDGRMEK
Sbjct: 218 YTVNNQMVNATLMNLADNPTNVQLPGQYQVEEIPRVPIIATGNDFSTLYAPLIRDGRMEK 277
Query: 293 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 352
+YW+P+ EDR+GV GIF+ D V ++D+ LV TF GQSIDFFGALRARVYDD+VR+WI
Sbjct: 278 YYWSPSFEDRVGVACGIFKADGVAEKDVEVLVRTFDGQSIDFFGALRARVYDDKVREWIR 337
Query: 353 EVGIERIGKRLVNSKEGPP-TFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAA 411
E GIE +G LVN K G TFE P+M+LD LL+YG+ L EQENVKRVQLAD YL A
Sbjct: 338 ETGIEAMGPLLVNPKRGSKVTFEPPRMSLDILLQYGKALEMEQENVKRVQLADAYLDGAV 397
Query: 412 L 412
L
Sbjct: 398 L 398
>gi|308802948|ref|XP_003078787.1| RuBisCO activase (IC) [Ostreococcus tauri]
gi|116057240|emb|CAL51667.1| RuBisCO activase (IC) [Ostreococcus tauri]
Length = 407
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/380 (63%), Positives = 285/380 (75%), Gaps = 19/380 (5%)
Query: 58 VSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME-SGTHYAVMSSYDYI 116
VS + RW G+ DISDDQQDI RGK MVD+ FQ GTH AVMSS DY+
Sbjct: 22 VSSVSNGSKVEMSRWKGMDMDISDDQQDIARGKNMVDSKFQGGAGIGGTHNAVMSSQDYL 81
Query: 117 SQGLRQY-SLDN-TLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
S G++ Y DN T + YI+ ++MDKVVVHI KNF+ LP +KVPLILG+WGGKGQGK+F
Sbjct: 82 SAGMKTYDGHDNITAENFYISKSYMDKVVVHIAKNFMQLPKIKVPLILGVWGGKGQGKTF 141
Query: 175 QCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223
Q +L+F K+GIN GNAGEPAKL+RQRYREA+DI+KKG+M LFINDLDAG
Sbjct: 142 QSDLIFRKLGINPIVMSAGELESGNAGEPAKLVRQRYREASDIVKKGRMSTLFINDLDAG 201
Query: 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283
AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG Y E PRVPII TGNDFSTLYAP
Sbjct: 202 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVIEIPRVPIIATGNDFSTLYAP 261
Query: 284 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 343
L+RDGRM+KFYW+PT EDR+G+ +GIF D V ED+ LV TF GQSIDFFGALRARVY
Sbjct: 262 LVRDGRMDKFYWSPTFEDRVGIANGIFMADGVSPEDVEVLVSTFEGQSIDFFGALRARVY 321
Query: 344 DDEVRKWISEVGIERIGKRLVNSKEGPP-TFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 402
DD+VR +I VG +++GKRL+N ++G FE P MTL+ LL YG+ + EQEN+KR+QL
Sbjct: 322 DDKVRDFILSVGYDQLGKRLINPRKGEEVVFEPPAMTLEVLLAYGKEIENEQENIKRIQL 381
Query: 403 ADKYLSEAAL----GDANDD 418
AD YL A L G +N D
Sbjct: 382 ADAYLDGAVLAGSGGSSNTD 401
>gi|23320705|gb|AAN15946.1| rubisco activase, partial [Medicago sativa]
Length = 270
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/269 (86%), Positives = 243/269 (90%), Gaps = 11/269 (4%)
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
+GQGKSFQ ELVFAKMGIN GNAGEPAKLIRQRYREA+DII+KGKMCCLF
Sbjct: 2 EGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLF 61
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGND
Sbjct: 62 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGND 121
Query: 277 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 336
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DN+ K+DIVK+VDTFPGQSIDFFG
Sbjct: 122 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDFFG 181
Query: 337 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 396
ALRARVYDDEVRKW+S VGIE IGK+LVNSKEGPP FEQPKMTL+KLLEYG MLV EQEN
Sbjct: 182 ALRARVYDDEVRKWVSGVGIETIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVSEQEN 241
Query: 397 VKRVQLADKYLSEAALGDANDDAIKNGSF 425
VKRVQLADKYL AALGDAN DAIK G F
Sbjct: 242 VKRVQLADKYLEGAALGDANQDAIKEGKF 270
>gi|119855475|gb|ABM01871.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Morus alba var. multicaulis]
Length = 246
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 221/246 (89%), Positives = 239/246 (97%)
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGND
Sbjct: 1 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGND 60
Query: 277 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 336
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC+GIFR+D+VP+EDIVK+VDTFPGQSIDFFG
Sbjct: 61 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRSDHVPEEDIVKIVDTFPGQSIDFFG 120
Query: 337 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 396
ALRARVYDDEVRKWIS VG+E IGK+LVNSKEGPPTF+QPKMT++KLLEYG MLVQEQEN
Sbjct: 121 ALRARVYDDEVRKWISGVGVETIGKKLVNSKEGPPTFDQPKMTVEKLLEYGNMLVQEQEN 180
Query: 397 VKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSD 456
VKRVQLADKYLSEAALGDAN D+IK+G+FYGKAAQQ+ +PVPEGCTDP AAN+DPTARSD
Sbjct: 181 VKRVQLADKYLSEAALGDANQDSIKSGTFYGKAAQQINIPVPEGCTDPLAANFDPTARSD 240
Query: 457 DGSCNY 462
+GSC Y
Sbjct: 241 NGSCLY 246
>gi|303277399|ref|XP_003057993.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226460650|gb|EEH57944.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 419
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/356 (65%), Positives = 272/356 (76%), Gaps = 15/356 (4%)
Query: 71 RWAGLAYDISDDQQDITRGKGMVDTLFQAPME-SGTHYAVMSSYDYISQGLRQYSLDNTL 129
RW G+ DISDDQQDI RG+GMVD+ FQ GT A+M DY+S G + S + +
Sbjct: 46 RWKGMDEDISDDQQDIARGRGMVDSKFQGGFGLGGTQNAIMQGSDYVSDGFKDLS-NMSD 104
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI---- 185
+G YI+ ++MDK+ VH+ KNF++LP +KVPLILGIWGGKGQGK+FQ L+F ++GI
Sbjct: 105 EGYYISKSYMDKITVHVAKNFMDLPKIKVPLILGIWGGKGQGKTFQSTLIFKRLGIAPII 164
Query: 186 -------NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238
+GNAGEPAKLIRQRYREA+DIIKKGKM LFINDLDAGAGRMGG+TQYTVNNQ
Sbjct: 165 MSAGELESGNAGEPAKLIRQRYREASDIIKKGKMSTLFINDLDAGAGRMGGSTQYTVNNQ 224
Query: 239 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
MVNATLMN+ADNPTNVQLPG Y EE PRVPII TGNDFSTLYAPLIRDGRM+KFYW+PT
Sbjct: 225 MVNATLMNLADNPTNVQLPGQYQVEEIPRVPIIATGNDFSTLYAPLIRDGRMDKFYWSPT 284
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 358
EDR GV GIF+ D V ++D+ LV TF GQSIDFFGALRARVYD +VR+W+ VG E
Sbjct: 285 FEDRCGVACGIFKADGVNEKDVEVLVRTFDGQSIDFFGALRARVYDQKVREWVQTVGQEN 344
Query: 359 IGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAAL 412
IG LVN +G FE P M+L+ LL++G+ L EQENVKRVQLAD YL A L
Sbjct: 345 IGSYLVNPSRDKGKLEFEPPVMSLEVLLQHGKALEGEQENVKRVQLADAYLDGAVL 400
>gi|110740175|dbj|BAF01986.1| Rubisco activase [Arabidopsis thaliana]
Length = 259
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 217/259 (83%), Positives = 235/259 (90%)
Query: 206 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265
+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN
Sbjct: 1 LIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN 60
Query: 266 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 325
RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD
Sbjct: 61 ARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVD 120
Query: 326 TFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLE 385
FPGQSIDFFGALRARVYDDEVRK++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+E
Sbjct: 121 QFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLME 180
Query: 386 YGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPA 445
YG MLV EQENVKRVQLA+ YLS+AALGDAN DAI G+FYGK AQQV +PVPEGCTDP
Sbjct: 181 YGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPV 240
Query: 446 AANYDPTARSDDGSCNYQF 464
A N+DPTARSDDG+C Y F
Sbjct: 241 AENFDPTARSDDGTCVYNF 259
>gi|410927496|gb|AFV93500.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 250
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/250 (87%), Positives = 231/250 (92%), Gaps = 11/250 (4%)
Query: 94 DTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNL 153
D+LFQAPM GTHYAVMSSY+Y+SQGLR Y LDN +DG YIAPAFMDK+VVHITKNF+ L
Sbjct: 1 DSLFQAPMNDGTHYAVMSSYEYLSQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNFMTL 60
Query: 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYRE 202
PN+KVPLILG+WGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYRE
Sbjct: 61 PNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 120
Query: 203 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 262
AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+
Sbjct: 121 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK 180
Query: 263 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 322
EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC+GIFRTDNVP +D+VK
Sbjct: 181 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDLVK 240
Query: 323 LVDTFPGQSI 332
LVDTFPGQSI
Sbjct: 241 LVDTFPGQSI 250
>gi|149941202|emb|CAO02533.1| putative rubisco activase [Vigna unguiculata]
Length = 251
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/249 (85%), Positives = 226/249 (90%), Gaps = 11/249 (4%)
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+S GL+ Y+ DN DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 2 YLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 61
Query: 175 QCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223
QCELVFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAG
Sbjct: 62 QCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAG 121
Query: 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAP
Sbjct: 122 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAP 181
Query: 284 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 343
LIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP+E++ KLVDTFPGQSIDFFGALRARVY
Sbjct: 182 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVTKLVDTFPGQSIDFFGALRARVY 241
Query: 344 DDEVRKWIS 352
DDEVRKW+S
Sbjct: 242 DDEVRKWVS 250
>gi|3687676|gb|AAC62215.1| rubisco activase precursor [Datisca glomerata]
Length = 244
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/244 (87%), Positives = 224/244 (91%), Gaps = 11/244 (4%)
Query: 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN---- 186
G YIAPAFMDK+VVHITKNF+ PN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN
Sbjct: 1 GFYIAPAFMDKLVVHITKNFMTFPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 60
Query: 187 -------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 239
GNAGEPAKLIRQR REAADIIKKGKM CLFINDLDAGAGR+GGTTQYTVNNQM
Sbjct: 61 SAGELESGNAGEPAKLIRQRCREAADIIKKGKMSCLFINDLDAGAGRLGGTTQYTVNNQM 120
Query: 240 VNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 299
VNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR
Sbjct: 121 VNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 180
Query: 300 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI 359
EDRIGVC+GIFR+DNV KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS VG++ +
Sbjct: 181 EDRIGVCTGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVQDV 240
Query: 360 GKRL 363
GK L
Sbjct: 241 GKSL 244
>gi|410927480|gb|AFV93499.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 236
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/236 (88%), Positives = 219/236 (92%), Gaps = 11/236 (4%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AVMSSY+YISQGLR Y LDN +DG YIAPAFMDK+VVHITKN++ LPN+KVPLILGIWGG
Sbjct: 1 AVMSSYEYISQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGG 60
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLF
Sbjct: 61 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 120
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGND
Sbjct: 121 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGND 180
Query: 277 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSI 332
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC+GIFRTDNVP +DIVKLVDTFPGQSI
Sbjct: 181 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSI 236
>gi|149941206|emb|CAO02535.1| putative rubisco activase [Vigna unguiculata]
Length = 244
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/242 (85%), Positives = 222/242 (91%), Gaps = 11/242 (4%)
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--- 186
DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN
Sbjct: 3 DGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIV 62
Query: 187 --------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238
GNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GGTTQYTVNNQ
Sbjct: 63 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQ 122
Query: 239 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
MVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 123 MVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 182
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 358
R+DR+GVC GIFRTD VP++++ KLVDTFPGQSIDFFGALRA+VYDDEVRKW+S VG++
Sbjct: 183 RDDRVGVCKGIFRTDGVPEKEVTKLVDTFPGQSIDFFGALRAKVYDDEVRKWVSGVGVDG 242
Query: 359 IG 360
IG
Sbjct: 243 IG 244
>gi|100380|pir||S25484 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) (clone
TA1.1) - common tobacco (fragment)
gi|19992|emb|CAA78704.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 232
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/232 (86%), Positives = 216/232 (93%)
Query: 194 KLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 253
KLI QRYREAA+II+KG MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN
Sbjct: 1 KLISQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 60
Query: 254 VQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTD 313
VQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD
Sbjct: 61 VQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTD 120
Query: 314 NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTF 373
NVP+E +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+S GIE IG +L+NS +GPPTF
Sbjct: 121 NVPEEAVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTF 180
Query: 374 EQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 425
EQPKMT++KLLEYG MLVQEQENVKRVQLA+ YL EAALGDAN DAI G+F
Sbjct: 181 EQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 232
>gi|149941204|emb|CAO02534.1| putative rubisco activase [Vigna unguiculata]
Length = 229
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/227 (87%), Positives = 210/227 (92%), Gaps = 11/227 (4%)
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--- 186
DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN
Sbjct: 3 DGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIV 62
Query: 187 --------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238
GNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GGTTQYTVNNQ
Sbjct: 63 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQ 122
Query: 239 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
MVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 123 MVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 182
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
R+DR+GVC GIFRTD VP+E++ +LVDTFPGQSIDFFGALRARVYDD
Sbjct: 183 RDDRVGVCKGIFRTDGVPEEEVYQLVDTFPGQSIDFFGALRARVYDD 229
>gi|149941210|emb|CAO02537.1| putative rubisco activase [Vigna unguiculata]
Length = 236
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/235 (84%), Positives = 212/235 (90%), Gaps = 11/235 (4%)
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+S GL+ Y+ DN DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 2 YLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 61
Query: 175 QCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223
QCELVFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAG
Sbjct: 62 QCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAG 121
Query: 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAP
Sbjct: 122 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAP 181
Query: 284 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGAL 338
LIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP+E++ KLVDTFPGQSIDFFGAL
Sbjct: 182 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVYKLVDTFPGQSIDFFGAL 236
>gi|327323113|gb|AEA48974.1| rubisco activase, partial [Rosa roxburghii]
Length = 265
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/305 (67%), Positives = 233/305 (76%), Gaps = 40/305 (13%)
Query: 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK 182
Y +DN DGLYIAPAFMDK+VVHITKNF++LPN+KVPLILGIWGGKGQGKSFQCELVFAK
Sbjct: 1 YDMDNMKDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK 60
Query: 183 MGINGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 242
MGIN +L E A +I++ + GR
Sbjct: 61 MGINPIMMSAGELESGNAGEPAKLIRQRYL------------GR---------------- 92
Query: 243 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 302
G YN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 93 ------------DHAGRYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 140
Query: 303 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR 362
IGVC+GIF+TD+V + DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS VG++ +GK+
Sbjct: 141 IGVCTGIFKTDSVAQSDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDGVGKK 200
Query: 363 LVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKN 422
LVNSKEGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLAD+YL+EAALGDAN DAI
Sbjct: 201 LVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADQYLNEAALGDANSDAIDR 260
Query: 423 GSFYG 427
G+F+G
Sbjct: 261 GTFFG 265
>gi|428227229|ref|YP_007111326.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
gi|427987130|gb|AFY68274.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
Length = 415
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/287 (65%), Positives = 234/287 (81%), Gaps = 12/287 (4%)
Query: 132 LYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------ 185
Y++P F+DKV VHITKNFL+LP VKVPLILGI G KG+GKSFQCELVF +MGI
Sbjct: 3 FYVSPRFLDKVAVHITKNFLDLPGVKVPLILGIHGRKGEGKSFQCELVFERMGIEPVHMS 62
Query: 186 -----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 239
+ +AG+PA+LIR RYREA + I+ +G+MC L INDLDAGAGR G TQYTVN Q+
Sbjct: 63 AGELESPDAGDPARLIRLRYREAGEYIRTRGRMCVLMINDLDAGAGRFDGGTQYTVNTQL 122
Query: 240 VNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 299
VNATLMNIADNPTNVQLPG Y+++ PRVPI+VTGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 123 VNATLMNIADNPTNVQLPGSYDEKPLPRVPILVTGNDFSTLYAPLIRDGRMEKFYWDPDY 182
Query: 300 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI 359
EDR+G+ SGIF D + ++D +LVDTFP QSIDFFGALR+R YD++VR++I EVG+E++
Sbjct: 183 EDRVGIVSGIFSDDGLSRQDFERLVDTFPAQSIDFFGALRSRFYDEQVRRFIQEVGVEQV 242
Query: 360 GKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
RL+NSKEG PTF++P+ TL++LLE+G ++VQEQE V+ +LA++Y
Sbjct: 243 SFRLLNSKEGAPTFQKPRFTLERLLEFGYLMVQEQERVRTSRLAEEY 289
>gi|6967045|emb|CAB72439.1| rubisco activase [Pinus halepensis]
Length = 226
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/226 (84%), Positives = 203/226 (89%), Gaps = 11/226 (4%)
Query: 81 DDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMD 140
DDQQDI RGKG VD+LFQAPM SGTH A+MSSYDYIS R YSLDN +DG YIAPAFMD
Sbjct: 1 DDQQDIRRGKGKVDSLFQAPMGSGTHNAIMSSYDYISTAQRTYSLDNMMDGYYIAPAFMD 60
Query: 141 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189
K+VVHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCELVFAK+GIN G+A
Sbjct: 61 KLVVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDA 120
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GEPAKLIR+RYREAADI+KKGKMC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIAD
Sbjct: 121 GEPAKLIRKRYREAADIVKKGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIAD 180
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 295
NPTNVQLPGMYN+EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYW
Sbjct: 181 NPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW 226
>gi|411118859|ref|ZP_11391239.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410710722|gb|EKQ68229.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 507
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/318 (57%), Positives = 237/318 (74%), Gaps = 16/318 (5%)
Query: 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
++D YI+P F+DK+ VHITKN+L+LPNVKVPLILG+ G KG+GKSFQCELVF +M
Sbjct: 54 AIDAEFMSFYISPRFLDKIAVHITKNYLDLPNVKVPLILGVHGRKGEGKSFQCELVFERM 113
Query: 184 GIN-----------GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTT 231
G+N +AG+PA+LIR RYREAA+++K +GKM L IND+DAGAGR+ T
Sbjct: 114 GVNVVHMSAGELESPDAGDPARLIRLRYREAAELVKVRGKMAVLMINDIDAGAGRVDQYT 173
Query: 232 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 291
QYTVN Q+VN TLMNIADNPTNVQLPG Y+ E R+PIIVTGNDFSTLY PL+RDGRME
Sbjct: 174 QYTVNTQLVNGTLMNIADNPTNVQLPGSYDSEPIQRIPIIVTGNDFSTLYQPLVRDGRME 233
Query: 292 KFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 351
KFYW P +DR+G+ +GIF+ D V + DI KLVDTFP Q+IDFFGALR+R++D+++R +I
Sbjct: 234 KFYWEPNWDDRVGIVAGIFQVDPVSRADIEKLVDTFPNQAIDFFGALRSRLFDEQIRNFI 293
Query: 352 SEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA---DKYLS 408
VGIER+ +R+VNSKE PP F++P +L L+E G +V EQ+ V+ LA +K+L
Sbjct: 294 HSVGIERVSQRVVNSKEAPPEFKKPDFSLPHLIEVGNQMVYEQKRVQESGLAQEYNKFLY 353
Query: 409 EAALGDANDDAI-KNGSF 425
LGD + + + GS
Sbjct: 354 NRRLGDTDSSTLPRQGSI 371
>gi|19988|emb|CAA78702.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 206
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/204 (87%), Positives = 192/204 (94%)
Query: 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283
AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAP
Sbjct: 2 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAP 61
Query: 284 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 343
LIRDGRMEKFYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVY
Sbjct: 62 LIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVY 121
Query: 344 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 403
DDEVRKW+S GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLA
Sbjct: 122 DDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLA 181
Query: 404 DKYLSEAALGDANDDAIKNGSFYG 427
DKYL EAALGDAN DAI NGSF+
Sbjct: 182 DKYLKEAALGDANADAINNGSFFA 205
>gi|334117637|ref|ZP_08491728.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
gi|333460746|gb|EGK89354.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
Length = 425
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/286 (62%), Positives = 226/286 (79%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG-----ING 187
YI+P F+DKV VHITKNFLNLP V+VPLILGI G KG+GK+FQ ELVF +MG I+G
Sbjct: 4 YISPNFLDKVAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQTELVFRRMGFEPVMISG 63
Query: 188 ------NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+AG+PA+LIR RYREAA+ I+ +G+MC +FINDLDAGAGR TTQYTVN QMV
Sbjct: 64 GELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDSTTQYTVNTQMV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPTNVQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P+R+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSTPLDRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D+IG+ GIF +D + K +IV LVD FP Q+IDFF ALR+R+YD+++R++I ++GIER+
Sbjct: 184 DKIGIVGGIFESDKLSKTEIVGLVDNFPDQAIDFFSALRSRIYDEQIREFIHKIGIERVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
KRLVN+ E P F+ P +L LLE G ++V +Q+ ++ ++L D+Y
Sbjct: 244 KRLVNTLEAAPDFQNPNFSLAHLLEMGSLMVGQQKRIQEMRLVDEY 289
>gi|300868066|ref|ZP_07112703.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
gi|300333904|emb|CBN57881.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
Length = 425
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/304 (58%), Positives = 230/304 (75%), Gaps = 12/304 (3%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG-----ING 187
YI+P+F+DKV VHITKNFL+LP V+VPLILGI G KG+GK+FQCEL F ++G I+G
Sbjct: 4 YISPSFLDKVAVHITKNFLDLPGVRVPLILGIHGRKGEGKTFQCELAFERLGFEPVTISG 63
Query: 188 ------NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+AG+PA+LIR RYREAA+ I+ +G+MC +FINDLDAGAGR TTQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDSTTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPTNVQLPG Y+ RVPIIVTGNDF+TLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDDTPLHRVPIIVTGNDFATLYAPLIRDGRMEKFYWEPNRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D+IG+ SGIF D +P+ +I + VD FP Q+IDFF ALR+R+YD+++R++I +GIE++
Sbjct: 184 DKIGIVSGIFEADGMPQSEIAEFVDAFPDQAIDFFSALRSRIYDEQIREFIHGIGIEKVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 420
KRLVNS E P F +P +L +L+E GR +V +Q +K ++L ++Y G N +
Sbjct: 244 KRLVNSLEAAPHFPKPNFSLSRLIEIGRAMVGQQYRIKEMRLVEEYNQNRLFGSQNSGEV 303
Query: 421 KNGS 424
+ S
Sbjct: 304 SSNS 307
>gi|428320865|ref|YP_007118747.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
gi|428244545|gb|AFZ10331.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
Length = 424
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/286 (63%), Positives = 226/286 (79%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG-----ING 187
YI+P F+DKV VH+TKNFLNLP V+VPLILGI G KG+GK+FQ ELVF +MG I+G
Sbjct: 4 YISPNFLDKVAVHVTKNFLNLPGVRVPLILGIHGRKGEGKTFQTELVFRRMGFEPVMISG 63
Query: 188 ------NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+AG+PA+LIR RYREAA+ I+ +G+MC +FINDLDAGAGR TTQYTVN QMV
Sbjct: 64 GELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDTTTQYTVNTQMV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPTNVQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P+R+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D+IG+ GIF +D + K +IV LVD FP Q+IDFF ALR+R+YD++VR++I +VGIER+
Sbjct: 184 DKIGIVGGIFESDKLSKTEIVGLVDHFPDQAIDFFSALRSRIYDEQVREFIHKVGIERVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
KRLVN+ E P F+ P +L LLE G ++V +Q+ ++ ++L D+Y
Sbjct: 244 KRLVNTLEAAPDFKNPDFSLAHLLEMGSLMVGQQKRIQEMRLVDEY 289
>gi|427728382|ref|YP_007074619.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
gi|427364301|gb|AFY47022.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
Length = 415
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/286 (61%), Positives = 220/286 (76%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQCEL F KMG+
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ GIF D + + ++ +LVDTFP QSIDFF ALR+R+YD+++R +I +VG E +
Sbjct: 184 DKVGIVGGIFGEDGLSQREVEQLVDTFPNQSIDFFSALRSRIYDEQIRNFIHQVGFEHVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
R+VNS EGPP F++P+ +L L+E G +V EQ+ V+ QL D+Y
Sbjct: 244 LRVVNSLEGPPAFKKPEFSLSHLIESGNFMVGEQKRVETSQLVDEY 289
>gi|10720250|sp|Q06721.1|RCA_ANASC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|485516|pir||S33627 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) - Anabaena
sp. (strain CA)
gi|296414|emb|CAA48129.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Anabaena
sp. CA]
Length = 415
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/332 (55%), Positives = 233/332 (70%), Gaps = 27/332 (8%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQCEL F KMG+
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
+++G+ GIF D + + D+ KLVD+FP QSIDFF ALR+R+YD+++R +I +VG E +
Sbjct: 184 EKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 420
R+VNS EGPP F++P TL L+E +V EQ+ ++ QL D+Y + +
Sbjct: 244 LRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY-----------NRL 292
Query: 421 KNGSFYGKAAQQVKV----PVPEGCTDPAAAN 448
G Y A+ ++ P P G P +A+
Sbjct: 293 NRGRSYQPASPVAEIATSQPSPNGVNQPQSAS 324
>gi|220909662|ref|YP_002484973.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
gi|219866273|gb|ACL46612.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
Length = 423
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/345 (54%), Positives = 246/345 (71%), Gaps = 20/345 (5%)
Query: 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI----- 185
G YIAP F+DK+ VHITKN+L+LPNVKVPLILGI G KG+GK+F CELVF +MGI
Sbjct: 2 GYYIAPRFLDKLSVHITKNYLDLPNVKVPLILGIHGRKGEGKTFMCELVFKRMGIGVVYM 61
Query: 186 ------NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238
+ +AG+P++LIR RYREA + K G+M L IND+DAG GR+ TTQYTVN Q
Sbjct: 62 SAGELESPDAGDPSRLIRLRYREAGEWSKVNGRMAALMINDVDAGIGRVDETTQYTVNTQ 121
Query: 239 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
+VNATLMNIADNPTNVQLPG Y+QE R+PII+TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSYDQEPTRRIPIILTGNDFSTMYAPLIRDGRMEKFYWEPD 181
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 358
R DR+G+ GIF D +P +I KLVD+FP QSIDFFGALR+R+YD+++R+ I EVGIER
Sbjct: 182 RSDRLGIVQGIFALDQIPDPEIEKLVDSFPDQSIDFFGALRSRLYDEQIRQLIQEVGIER 241
Query: 359 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY--LSEAALGDAN 416
I R+VNS E P F +P +L L+E G+++V+EQ+ ++ ++L+++Y + A
Sbjct: 242 ISPRVVNSAEPLPEFRRPNFSLPHLIEIGQLMVREQQRIRELRLSEEYNRPGQTARSSTP 301
Query: 417 DDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCN 461
D AI + Y + +PE + ++AN A S+ GS +
Sbjct: 302 DGAIASPPAYHQPPY-----LPEPGSHSSSANGH-AAPSEPGSLS 340
>gi|427707439|ref|YP_007049816.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
gi|427359944|gb|AFY42666.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
Length = 415
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/323 (56%), Positives = 230/323 (71%), Gaps = 23/323 (7%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQCEL F KMG+
Sbjct: 4 YIAPRFLDKIAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A+ +K +G+MC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAEQVKVRGRMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
+++G+ GIF D + ++ + VDTFP QSIDFF A+R+R+YD+++RK+I E+G E I
Sbjct: 184 EKVGIVGGIFVEDGLSSREVEQFVDTFPNQSIDFFSAVRSRIYDEQIRKFIHEIGFENIS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 420
R+VNS EGPPTF++P L L+E G +V EQ+ V+ QL D+Y + +
Sbjct: 244 LRVVNSVEGPPTFKKPNFNLSHLIESGHFMVGEQKRVENSQLVDEY-----------NRL 292
Query: 421 KNGSFYGKAAQQVKVPVPEGCTD 443
G Y A +V+ P+ + T+
Sbjct: 293 NRGRSYQVAPPKVETPISQPSTN 315
>gi|414076620|ref|YP_006995938.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
gi|413970036|gb|AFW94125.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
Length = 407
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/286 (61%), Positives = 221/286 (77%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP+F+DK+ VHITKNFLN+P ++VPLILGI G KG+GK+FQCELVF KMGI
Sbjct: 4 YIAPSFLDKLAVHITKNFLNIPGIRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTLISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM+KFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPLCRVPIIVTGNDFSTLYAPLIRDGRMDKFYWEPNRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ GIF D + +++I + VDTFP QSIDFF ALR+R+YD+++R +I ++G E +
Sbjct: 184 DKVGIVGGIFAEDGLSQKEIAQFVDTFPHQSIDFFSALRSRIYDEQIRHFIHKIGFENVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
R+VNS EGPP F++P TL L+E G+ +V EQ+ V+ L D+Y
Sbjct: 244 LRVVNSLEGPPAFKKPDFTLSHLIESGKFMVGEQKRVETSHLVDEY 289
>gi|434391832|ref|YP_007126779.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
gi|428263673|gb|AFZ29619.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
Length = 462
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/300 (60%), Positives = 226/300 (75%), Gaps = 14/300 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YI+P F+DK+ VHITKNFL+LP ++VPLILGI G KG+GK+FQCELVF +MGI
Sbjct: 4 YISPRFLDKLAVHITKNFLDLPGIRVPLILGIHGRKGEGKTFQCELVFERMGIEVIHISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYREAA++IK +GKM L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELIKVRGKMVALMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIR+GRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIREGRMEKFYWEPDRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D+IG+ GIF D + +++ +LVD FP Q+IDFF ALR+RVYD+++R++I E GIER+
Sbjct: 184 DKIGIVGGIFAEDGLSAQEVTQLVDAFPDQAIDFFSALRSRVYDEQIRRFIHETGIERVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 420
R+VNS EGPP F++P L LLE G +VQEQ+ V+ +L +Y AL AN + I
Sbjct: 244 LRVVNSTEGPPVFQKPDFRLSHLLESGNFMVQEQQRVESSRLVHEY--NQALYYANRNPI 301
>gi|75910107|ref|YP_324403.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
gi|75703832|gb|ABA23508.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
Length = 414
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/286 (62%), Positives = 219/286 (76%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP F+DK+ VHITKNFLN+P V+VPLILGI G KG+GK+FQCEL F KMGI
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ GIF D + K +I +LVDTFP QSIDFF ALR+R+YD+++R +I +VG ERI
Sbjct: 184 DKVGIVGGIFAEDGLSKREIEQLVDTFPKQSIDFFSALRSRIYDEQIRDFIHQVGFERIS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
R+VNS E PP F++P +L L+E G +++ EQ+ V QL D+Y
Sbjct: 244 LRVVNSVEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>gi|354567922|ref|ZP_08987089.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
gi|353541596|gb|EHC11063.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
Length = 415
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/286 (62%), Positives = 219/286 (76%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YI+P F+DKV VHITKNFL+LP ++VPLILGI G KG+GKSFQCELVF KMG+
Sbjct: 4 YISPRFLDKVAVHITKNFLDLPGLRVPLILGIHGRKGEGKSFQCELVFEKMGVEVTHISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDPTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPDRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D+IG+ GIF D + + +I +LVDTF QSIDFF ALR+R+YD+++R +I EVG+ER+
Sbjct: 184 DKIGIVGGIFSEDGLSQREIEQLVDTFLNQSIDFFSALRSRIYDEQIRDFIYEVGVERVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
+R+VNS EGPP F +P L L+E G ++V EQ+ V QL +Y
Sbjct: 244 RRVVNSLEGPPQFRKPNFNLSHLIEMGNVMVTEQQRVLTSQLVTEY 289
>gi|119508823|ref|ZP_01627975.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
gi|119466352|gb|EAW47237.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
Length = 416
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 219/286 (76%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQC+LVF KMGI
Sbjct: 4 YIAPRFLDKLGVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCQLVFEKMGIEVTNISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN QMV
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQMV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPDRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ GIF D + + ++ +LVDTFP QSIDF+ ALR+R+YD +VR++I +VG ER+
Sbjct: 184 DKVGIVGGIFAEDGLSQREVAQLVDTFPHQSIDFYSALRSRIYDQQVREFIHQVGFERVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
R+VNS E PP F++P +L L+ G +V EQ+ V+ QL D+Y
Sbjct: 244 SRIVNSAEKPPEFKKPDFSLSNLISAGNFMVGEQQRVETSQLVDEY 289
>gi|440681100|ref|YP_007155895.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
gi|428678219|gb|AFZ56985.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
Length = 414
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/286 (61%), Positives = 219/286 (76%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP+F+DK+ VHITKNFL+LP V+VPLILGI G KG+GK+FQCEL F KMGI
Sbjct: 4 YIAPSFLDKLAVHITKNFLHLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ GIF D + +I +LVDTF Q+IDFF +LR+R+YD ++R +I +VG E+I
Sbjct: 184 DKVGIVGGIFAPDGFSQREIEELVDTFANQAIDFFSSLRSRIYDQQIRNFIHQVGFEQIS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
KR+VNS EGPP F++P L L+E G+++V EQ+ V+ L D+Y
Sbjct: 244 KRVVNSLEGPPEFKKPNFNLSHLIESGKLMVGEQKRVETSHLVDEY 289
>gi|434404079|ref|YP_007146964.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
gi|428258334|gb|AFZ24284.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
Length = 415
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/341 (54%), Positives = 237/341 (69%), Gaps = 27/341 (7%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP F+DK+ VHITKNFL LP V+VPLILGI G KG+GK+FQCELVF KMGI
Sbjct: 4 YIAPRFLDKLGVHITKNFLQLPGVRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTQISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P+R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ GIF D + + + +LVDTF QS+DFF ALR+R+YD+++R++I +VG ER+
Sbjct: 184 DKVGIVGGIFAEDGLSQRQVEQLVDTFINQSVDFFSALRSRIYDEQIREFIHQVGFERVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 420
R+VNS E PP F++P +L L+E G ++V EQ+ V+ L D Y + +
Sbjct: 244 LRVVNSAEKPPEFKKPDFSLSHLIEAGNLIVGEQQRVETSHLVDDY-----------NRL 292
Query: 421 KNGSFYGKAAQQVKVPVPEGCTD----PAAANYDPTARSDD 457
G Y A+ + PV + T+ P A+N T + +
Sbjct: 293 NRGRSYQAASPAAETPVSQPSTNGFPKPEASNSHLTLETQE 333
>gi|332710946|ref|ZP_08430882.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
gi|332350260|gb|EGJ29864.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
Length = 448
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/286 (60%), Positives = 221/286 (77%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING----- 187
YI+P F+DK+ VHITKNFL++P+V+VPLILGI G KG+GKSFQCELVF +MGI
Sbjct: 6 YISPRFIDKLAVHITKNFLDIPHVRVPLILGIHGRKGEGKSFQCELVFERMGIEAVHMSS 65
Query: 188 ------NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+AG+PA+LIR RYRE A++I+ KGKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 66 GELESPDAGDPARLIRLRYRETAEMIRVKGKMCVLMINDLDAGAGRFDERTQYTVNTQLV 125
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
+ TLMNIADNPTNVQLPG Y+ + RVPIIVTGNDFSTLYAPL RDGRM KFYW P RE
Sbjct: 126 HGTLMNIADNPTNVQLPGSYDSQPIHRVPIIVTGNDFSTLYAPLTRDGRMSKFYWEPNRE 185
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
DRIG+ SGIF D + +I +L+DTF Q+IDFF ALR+R+YD+++RK+I ++GI+R+
Sbjct: 186 DRIGIVSGIFHGDGLSSGEIEQLIDTFDNQAIDFFSALRSRIYDEQIRKFIYDIGIDRVS 245
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
R+VNSK+GPP FE P ++ +L+E+G ++ EQ+ ++ LA +Y
Sbjct: 246 SRVVNSKQGPPKFETPNFSISRLIEFGELIKAEQQRLELSGLAREY 291
>gi|298491099|ref|YP_003721276.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
gi|298233017|gb|ADI64153.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
Length = 408
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/319 (56%), Positives = 228/319 (71%), Gaps = 23/319 (7%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP+F+DK+ VHITKNFLNLP ++VPLILGI G KG+GKSFQCELVF KMGI
Sbjct: 4 YIAPSFLDKLAVHITKNFLNLPGIRVPLILGIHGRKGEGKSFQCELVFDKMGIETTLISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESSDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIAD+PT+VQLPG Y+ RVPIIVTGNDFSTLYAPL RDGRMEKFYW P R+
Sbjct: 124 NATLMNIADSPTDVQLPGSYDSNPTRRVPIIVTGNDFSTLYAPLTRDGRMEKFYWEPNRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ GIF D + + +I +LVD F QSIDFF LR+R+YD+++R++I +G E +
Sbjct: 184 DKVGMVGGIFAEDALLQREIEQLVDNFAYQSIDFFSTLRSRIYDEQIREFIHTIGFENVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 420
R+VNS EGPP F++P +L L++ G+ +V EQ+ V+ QL D+Y + +
Sbjct: 244 SRVVNSAEGPPAFKRPNFSLSHLIDSGKFMVAEQKRVETSQLVDEY-----------NRL 292
Query: 421 KNGSFYGKAAQQVKVPVPE 439
G Y AA + PV +
Sbjct: 293 NRGKSYQPAASIAETPVSQ 311
>gi|113475266|ref|YP_721327.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
gi|110166314|gb|ABG50854.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
Length = 423
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/293 (59%), Positives = 223/293 (76%), Gaps = 12/293 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YI+P F+DK+ VHITKNFL +P ++VPLI+GI G KG+GK+FQC+LVF KMGI
Sbjct: 4 YISPRFIDKLAVHITKNFLEIPRIRVPLIIGIHGRKGEGKTFQCQLVFEKMGIEPVTISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+L+R RYREA++ +K +G+MC LFINDLDAGAGR G TQYTVN Q+V
Sbjct: 64 GELESKDAGDPARLLRLRYREASEKVKVQGRMCALFINDLDAGAGRFDGGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPTNVQLPG Y++ R+PIIVTGNDFSTLYAPLIRDGRMEKFYW P RE
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLHRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRE 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
DR+G+ IF+TD + DI L+D F Q+IDFF ALR+R+YD+++R +I +VGIE+I
Sbjct: 184 DRVGIVGSIFKTDELSTGDIDNLIDEFSDQAIDFFSALRSRIYDEQIRDFIHQVGIEKIS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 413
+R+VNS E P F QP + +LLEYG+++V EQE ++ + L ++Y G
Sbjct: 244 RRVVNSVEKIPDFPQPTFNVSRLLEYGKIMVGEQERIRELGLVEEYNKSRLFG 296
>gi|186684323|ref|YP_001867519.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
gi|186466775|gb|ACC82576.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
Length = 425
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/330 (56%), Positives = 229/330 (69%), Gaps = 20/330 (6%)
Query: 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI----- 185
G YIAP F+DK+ VHITKNFL LP V+VP+ILGI G KG+GK+FQC+LVF KMGI
Sbjct: 2 GYYIAPRFLDKLAVHITKNFLKLPGVRVPVILGIHGRKGEGKTFQCQLVFEKMGIEVTHV 61
Query: 186 ------NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 239 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
+VNATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 358
R+D++G+ GIF D + ++++ +LVDTF QSIDFF ALR+R+YD+++R +I +VG ER
Sbjct: 182 RDDKVGIVKGIFEPDGLSQKEVEQLVDTFVNQSIDFFSALRSRIYDEQIRNYIHQVGFER 241
Query: 359 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDD 418
+ +VNS EGPP F++P L L+E G LV EQ+ V+ L D Y + G
Sbjct: 242 VSLSVVNSTEGPPEFKKPDFRLSHLIESGNFLVGEQKRVENSHLVDDY-NRLNRG----- 295
Query: 419 AIKNGSFYGKAAQQVKVPVPEGCTDPAAAN 448
+N AA + P G T A N
Sbjct: 296 --RNSQSASPAATPINQPSSNGATQEAKTN 323
>gi|17229025|ref|NP_485573.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
gi|20139326|sp|P58555.1|RCA_ANASP RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|17135353|dbj|BAB77899.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
Length = 414
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 218/286 (76%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP F+DK+ VHITKNFLN+P V+VPLILGI G KG+GK+FQCEL F KMGI
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ GIF D + + +I +LVDTFP QSIDFF ALR+R+YD ++R +I +VG ERI
Sbjct: 184 DKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERIS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
R+VNS E PP F++P +L L+E G +++ EQ+ V QL D+Y
Sbjct: 244 LRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>gi|428299641|ref|YP_007137947.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
gi|428236185|gb|AFZ01975.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
Length = 425
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/288 (60%), Positives = 221/288 (76%), Gaps = 12/288 (4%)
Query: 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI----- 185
G YIAP F+DK+ VHITKNFLN+P V+VPLILG+ G KG+GKSFQCELVF +MGI
Sbjct: 2 GYYIAPRFLDKLAVHITKNFLNIPGVRVPLILGVHGRKGEGKSFQCELVFERMGIEVTLI 61
Query: 186 ------NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238
+ +AG+PA+LIR RYRE A+++K +GKMC L INDLDAGAGR TQYTVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 239 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
+VNATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 358
R+D++GV GIF D + + ++ +LVDTFP QSIDF+ A+R+R+YD++V +I ++G+E
Sbjct: 182 RDDKVGVVEGIFGDDGLSRREVAQLVDTFPNQSIDFYSAMRSRLYDEQVLHFIHDIGVEN 241
Query: 359 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
+ +R+VNS E P F +P +L +LLE G +V EQ++V+ QL ++Y
Sbjct: 242 VSQRVVNSAEAAPIFGKPDFSLSRLLEMGNFMVSEQQHVENSQLVEQY 289
>gi|427715651|ref|YP_007063645.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
gi|427348087|gb|AFY30811.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
Length = 417
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 174/286 (60%), Positives = 220/286 (76%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP F+DK+ VHITKNFL LP V+VPLILGI G KG+GK+FQCELVF KMGI
Sbjct: 4 YIAPRFLDKLAVHITKNFLKLPGVRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTLISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDF+TLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFTTLYAPLIRDGRMEKFYWEPDRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ GIF D + ++++ +LVDTFP QSIDF+ A+R+R+YD+++R +I +VG E++
Sbjct: 184 DKVGIVGGIFEPDGLSRKEVEQLVDTFPHQSIDFYSAVRSRIYDEQIRNYIHKVGFEQVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
+VNS EGPP F++P L L+E G ++V EQ+ V+ QL D+Y
Sbjct: 244 LSVVNSVEGPPEFKKPNFGLSHLIEAGNLMVGEQKRVENSQLVDEY 289
>gi|443313470|ref|ZP_21043081.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
gi|442776413|gb|ELR86695.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
Length = 498
Score = 367 bits (943), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 172/286 (60%), Positives = 215/286 (75%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING----- 187
YI+P+F+DK+ VHITKNFL LP V+VPLILGI G KG+GKSFQCELVF +MGI
Sbjct: 4 YISPSFLDKLAVHITKNFLELPGVRVPLILGIHGRKGEGKSFQCELVFERMGIEAIHMSA 63
Query: 188 ------NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+AG+P +L+R RYREA+++ K +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPGRLVRLRYREASELSKVRGKMCVLMINDLDAGAGRFDRGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
N TLMNIADNPT+VQLPG Y+ R+PIIVTGNDFSTLYAPLIRDGRMEKF+W P R+
Sbjct: 124 NGTLMNIADNPTDVQLPGSYDSTPLQRIPIIVTGNDFSTLYAPLIRDGRMEKFFWEPNRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ SGIF D +PK DI KLVDTF Q IDFF ALR+R+YD+++R +I G E++
Sbjct: 184 DKVGIVSGIFEPDGLPKRDIEKLVDTFLNQPIDFFSALRSRIYDEQIRDFIHTTGFEKVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
R+VNS E PTF +P L +L+EYG ++V+EQ+ V+ L +Y
Sbjct: 244 LRVVNSTEAAPTFAKPNFQLPRLIEYGNLMVKEQQRVENSGLVREY 289
>gi|428305071|ref|YP_007141896.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
gi|428246606|gb|AFZ12386.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
Length = 427
Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 166/286 (58%), Positives = 224/286 (78%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YI+P F+DK+ VHITKNFL+LP V+VPLILGI G KG+GK+FQCELVF +MGI
Sbjct: 4 YISPRFLDKLAVHITKNFLDLPGVRVPLILGIHGRKGEGKTFQCELVFQRMGIEVVHMSA 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+P++L+R RYREAA++IK +GKMC L INDLDAGAGR TQYTVN QMV
Sbjct: 64 GELESPDAGDPSRLVRLRYREAAELIKVRGKMCVLMINDLDAGAGRFDQGTQYTVNTQMV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPTNVQLPG Y+ RVPI+VTGNDF+TLYAPLIRDGRMEKF+W PTR+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSTPLHRVPILVTGNDFTTLYAPLIRDGRMEKFHWEPTRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
+++G+ GI+ D + + +I +LVD F Q++DFFGALR+R+YD+++R++I +VG ++
Sbjct: 184 EKVGIVRGIYSEDGLSESEIAQLVDNFVTQAVDFFGALRSRIYDEQIRQFIHQVGYNKVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
+VNS +GPP F++P +L +L+E+G ++ QEQ+ V+ +L ++Y
Sbjct: 244 SAVVNSVDGPPIFQKPDFSLSRLIEFGNLMAQEQQRVQSSRLVEEY 289
>gi|428310574|ref|YP_007121551.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
gi|428252186|gb|AFZ18145.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
Length = 437
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 173/286 (60%), Positives = 218/286 (76%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING----- 187
YI+P F++K+ VHITKN+L+LP V+VPLILGI G KG+GKSFQCELVF +MG+
Sbjct: 4 YISPRFLNKLSVHITKNYLDLPGVRVPLILGIHGRKGEGKSFQCELVFERMGVEAVHMSA 63
Query: 188 ------NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+AG+PA+LIR RYREAA++I+ +GKM L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELIRVRGKMAVLMINDLDAGAGRFDQGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
N TLMNIADNPT+VQLPG Y+ RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RE
Sbjct: 124 NGTLMNIADNPTDVQLPGSYDSTPLHRVPILVTGNDFSTLYAPLIRDGRMEKFYWEPDRE 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
DRIG+ SGIF D +P++ I +LVDTFPGQ IDFF ALR+R+YD+++ ++I ++G ERI
Sbjct: 184 DRIGIVSGIFSEDGLPRQQIEQLVDTFPGQPIDFFSALRSRIYDEQILQFIQKIGFERIS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
R+VNS E P F +P L +L+E+G +L EQ+ V+ + L +Y
Sbjct: 244 SRIVNSAEEAPKFPKPNFNLSRLIEFGNLLRGEQKQVENMGLVREY 289
>gi|209526170|ref|ZP_03274701.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|376005139|ref|ZP_09782687.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|423065450|ref|ZP_17054240.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
gi|209493426|gb|EDZ93750.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|375326497|emb|CCE18440.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|406713143|gb|EKD08317.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
Length = 434
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 167/286 (58%), Positives = 222/286 (77%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YI+P F+DKV VHITKNFL++P +KVPLILGI G KG+GK+FQCELVF MGI
Sbjct: 4 YISPRFLDKVSVHITKNFLDIPRIKVPLILGIHGRKGEGKTFQCELVFKTMGIEPVMISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+P++L+R RYREAA+ ++ KG+MC +FIND DAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLLRLRYREAAEQVRVKGQMCAIFINDFDAGAGRFDSGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPTNVQLPG Y++ R+PII+TGNDFSTLYAPLIRDGRM+KFYW P+RE
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLHRIPIIITGNDFSTLYAPLIRDGRMDKFYWEPSRE 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
DRI + GIF D++ I+KLVD F GQ+IDFF A+R+R+YD+++R++I G+++I
Sbjct: 184 DRIAIVRGIFADDSLSDSQIIKLVDDFTGQAIDFFSAMRSRIYDEQIREFIYHQGLDKIS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
+RLVNS + PP QP +L L+E GR +V+EQ+ +++++L ++Y
Sbjct: 244 RRLVNSVDKPPELPQPDFSLQHLIESGRAMVEEQQQIQKLRLVEEY 289
>gi|434387097|ref|YP_007097708.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
gi|428018087|gb|AFY94181.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
Length = 302
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 173/287 (60%), Positives = 221/287 (77%), Gaps = 13/287 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING----- 187
YIAPAF+DK+ VHITKNFL+LP VKVPLILG+ G KG+GK+FQCELVF +M +
Sbjct: 4 YIAPAFLDKLAVHITKNFLDLPGVKVPLILGVHGRKGEGKTFQCELVFDRMKVEAIHISA 63
Query: 188 ------NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+AG+ A+LIR RYREAA+IIK +G+M L IND+DAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDSARLIRLRYREAAEIIKVRGRMAVLVINDIDAGAGRFDQGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIAD+PTNVQLPG Y+ PR+PIIVTGND STLYAPLIRDGRMEK+YW PTRE
Sbjct: 124 NATLMNIADHPTNVQLPGSYDSTPLPRIPIIVTGNDLSTLYAPLIRDGRMEKYYWVPTRE 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D+IG+ GIF DN+ + +IV LVD FP +++DFF A+RAR+YD+++R +I +VG+ER+
Sbjct: 184 DKIGIVRGIFAPDNISEREIVNLVDRFPDRAVDFFAAMRARIYDEQIRDFIHKVGLERLS 243
Query: 361 KRLVNSKEG-PPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
+VN G PTF +P TL +L+E+G +LVQEQ++V +L ++Y
Sbjct: 244 IEVVNPASGIKPTFPKPYFTLARLIEFGNLLVQEQKSVDESRLVEEY 290
>gi|443478603|ref|ZP_21068337.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443016085|gb|ELS30823.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 297
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 174/287 (60%), Positives = 217/287 (75%), Gaps = 12/287 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YI+P F+DK+ VH+ KNF+ LPNV VPLILGI GGKG+GKSFQCEL F K+GI
Sbjct: 4 YISPRFLDKLAVHLAKNFMKLPNVTVPLILGIHGGKGEGKSFQCELAFEKLGIEPIRMSG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYREAA+++K +GKMC L INDLDAGAGR+ TTQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRMRYREAAELVKVRGKMCALLINDLDAGAGRVDSTTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPTNVQLPG Y+ RVPIIVTGNDFSTLYAPL+RDGRMEKF+W P R
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLVRDGRMEKFFWMPDRT 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
DRIG+ SGIF DN+P+ +I +LVD +P +SIDFFG+LR+ +YD++VRK++ ++G+ER+
Sbjct: 184 DRIGIVSGIFAPDNIPQWEIERLVDMYPDRSIDFFGSLRSSLYDEQVRKFVYDIGLERLS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RLVNS E P F P L L E G L+ E + V + L +Y+
Sbjct: 244 LRLVNSTEALPEFRPPSFDLRTLKEAGDRLLAEGDRVSQRNLIQEYM 290
>gi|149941208|emb|CAO02536.1| putative rubisco activase [Vigna unguiculata]
Length = 214
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 172/202 (85%), Positives = 182/202 (90%), Gaps = 11/202 (5%)
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+S GL+ Y+ DN DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 13 YLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 72
Query: 175 QCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223
QCELVFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAG
Sbjct: 73 QCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAG 132
Query: 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAP
Sbjct: 133 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAP 192
Query: 284 LIRDGRMEKFYWAPTREDRIGV 305
LIRDGRMEKFYWAPTR+DR+GV
Sbjct: 193 LIRDGRMEKFYWAPTRDDRVGV 214
>gi|119486453|ref|ZP_01620511.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119456355|gb|EAW37486.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 445
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 169/286 (59%), Positives = 220/286 (76%), Gaps = 13/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG-----ING 187
YI+P F+DK+ VHITKNFL + N++VPLILGI G KG+GK+FQCELVF KMG I+G
Sbjct: 4 YISPRFLDKLAVHITKNFLKISNLRVPLILGIHGRKGEGKTFQCELVFEKMGFEPVTISG 63
Query: 188 ------NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+AG+P++LIR RYREA++ K +G+MC LFIND+DAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLIRLRYREASEQTKVRGQMCALFINDIDAGAGRFDSGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPTNVQLPG Y++ R+PIIVTGNDFSTLYAPLIRDGRMEKFYW P +
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLQRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNSK 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
+R+ + GIF+ + + K+DI+KLVD FP QS+DFF ALR+R+YD++++ +I ++GIE+I
Sbjct: 184 ERVEIVEGIFQQELL-KQDIIKLVDEFPEQSVDFFSALRSRIYDEQIQSFIHQMGIEKIS 242
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
KR+VNS E PP F +P LLE G +V EQ ++ ++L ++Y
Sbjct: 243 KRIVNSTEKPPEFNKPNFKFSHLLEMGHQMVAEQRRIQELRLVEEY 288
>gi|427736905|ref|YP_007056449.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
gi|427371946|gb|AFY55902.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
Length = 787
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 168/286 (58%), Positives = 217/286 (75%), Gaps = 13/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YI+P F DK+ VHITKN+L+LP V+VPLILGI G KG+GKSFQCELVF KMG+
Sbjct: 4 YISPRFQDKLSVHITKNYLDLPKVRVPLILGIHGRKGEGKSFQCELVFEKMGVEVTHISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW PTRE
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPTRE 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ GIF D + K+D+ +LVD F Q++DF+ ALR+R+YD+++R++I G++R+
Sbjct: 184 DKVGIIGGIFSEDGLSKQDVEQLVDHFGNQAVDFYSALRSRIYDEQIRRFIQNKGVDRVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
++VNS P+F++PK L L+E ++V+EQ+ V L ++Y
Sbjct: 244 SQVVNSN-NIPSFQKPKFGLSDLMEVASLMVEEQQRVDNSHLVEEY 288
>gi|13569643|gb|AAK31173.1| ribulose-1,5-bisphosphate carboxylase activase [Oryza sativa Indica
Group]
Length = 193
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 164/190 (86%), Positives = 181/190 (95%)
Query: 240 VNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 299
VNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR
Sbjct: 1 VNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 60
Query: 300 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI 359
+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E I
Sbjct: 61 DDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENI 120
Query: 360 GKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDA 419
GKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA
Sbjct: 121 GKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDA 180
Query: 420 IKNGSFYGKA 429
+K GSFYG A
Sbjct: 181 MKTGSFYGSA 190
>gi|254416331|ref|ZP_05030084.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176769|gb|EDX71780.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 447
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 169/286 (59%), Positives = 218/286 (76%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP+F DK+ VHITKN+L L V+VPLILGI G KG+GKSFQCELVF +MGI
Sbjct: 9 YIAPSFRDKLAVHITKNYLELEGVRVPLILGIHGRKGEGKSFQCELVFEQMGIGIIHISG 68
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYREAA++IK +GKMC L INDLDAG GR TTQYTVN Q+V
Sbjct: 69 GELESPDAGDPARLIRLRYREAAEMIKVQGKMCGLMINDLDAGVGRFDSTTQYTVNTQLV 128
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
+ATLMNIAD+PT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIR+GRMEK+YW P+RE
Sbjct: 129 SATLMNIADHPTDVQLPGSYDANPLHRVPIIVTGNDFSTLYAPLIREGRMEKYYWEPSRE 188
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
+RIG+ GIF D +P+ DI +LVD FP Q+IDFF ALR+R+YD ++ +I +VG++++
Sbjct: 189 ERIGIVGGIFAADGLPRRDIEQLVDQFPDQAIDFFSALRSRIYDQQILHFIHDVGLDQVS 248
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
R+V S E PP FE+P + L+E+G++++ EQ V++ L +Y
Sbjct: 249 FRVVRSTEAPPEFEKPNFDISHLIEFGQVMIGEQRQVEQTGLVREY 294
>gi|149941212|emb|CAO02538.1| putative rubisco activase [Vigna unguiculata]
Length = 194
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 169/192 (88%), Positives = 176/192 (91%), Gaps = 11/192 (5%)
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--- 186
DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN
Sbjct: 3 DGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIV 62
Query: 187 --------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238
GNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GGTTQYTVNNQ
Sbjct: 63 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQ 122
Query: 239 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
MVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 123 MVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 182
Query: 299 REDRIGVCSGIF 310
R+DR+GVC GIF
Sbjct: 183 RDDRVGVCKGIF 194
>gi|427419082|ref|ZP_18909265.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
gi|425761795|gb|EKV02648.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
Length = 428
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 173/333 (51%), Positives = 237/333 (71%), Gaps = 16/333 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------ 186
YI+P F++ + VHITKNFL LP VK+PLI GI G KG+GK+FQCELV+ +MG+N
Sbjct: 4 YISPRFLNALAVHITKNFLELPQVKLPLIFGIHGRKGEGKTFQCELVYKRMGVNVVHISG 63
Query: 187 -----GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+AG+PA+LIR RYREAAD++K +G+M L INDLDAGAGR G TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAADLVKIRGEMAVLMINDLDAGAGRFDGMTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
N TLMNIADNPTNVQLPG Y++ PR+PI+VTGNDF+TLYAPL+RDGRM+KFYW P R+
Sbjct: 124 NNTLMNIADNPTNVQLPGSYDETPLPRIPIVVTGNDFATLYAPLVRDGRMQKFYWEPNRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
DR+G+ GIF D++ + DI LVDTFP Q+IDF+GALR+++YD+++ +I VG+E +
Sbjct: 184 DRLGIVGGIFSPDDLSRNDIETLVDTFPNQAIDFYGALRSQIYDEQIIDFIHRVGVENVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 420
+ +VN+K PP+F++P + L+E G+ LV+EQ ++ + L +Y ++A + +
Sbjct: 244 RNVVNTKT-PPSFKKPDFRIGHLIEVGQRLVREQRRLQEMGLVQEY-NQALNKVEENRSN 301
Query: 421 KNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTA 453
NG++Y A Q VP +P A+ P
Sbjct: 302 GNGNYY--RAYQPAPSVPLQPVEPNGASNTPAV 332
>gi|428220631|ref|YP_007104801.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
gi|427993971|gb|AFY72666.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
Length = 418
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 169/289 (58%), Positives = 218/289 (75%), Gaps = 13/289 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YI+P F+DK+ VHITKNFLNLP + VPLILGI G KG+GKSFQCELVF MGI
Sbjct: 4 YISPRFLDKLAVHITKNFLNLPGLTVPLILGIHGRKGEGKSFQCELVFKLMGIEPVRMSA 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+P +LIR RYREAAD+IK +GKMC L IND+DAGAGR+ +TQYTVN Q+V
Sbjct: 64 GELESPDAGDPVRLIRTRYREAADLIKVRGKMCVLLINDIDAGAGRVDSSTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
N TLMNIADNPT+VQLPG Y E RVPI++TGNDFSTLYAPL+RDGRMEKFYW PT+E
Sbjct: 124 NGTLMNIADNPTDVQLPGSYETEPISRVPILLTGNDFSTLYAPLLRDGRMEKFYWEPTKE 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
DRIG+ +GIF+ D + ++++ +L+ FP QSIDFFGALR++VYD +VR +I E+GI ++
Sbjct: 184 DRIGIVTGIFKADGLTEQNVEELISNFPHQSIDFFGALRSQVYDQQVRDFIREIGINKVS 243
Query: 361 KRLVNSKEGPPTFEQ-PKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
+VN+ + F+Q P L L++ G M+V EQ+ V+ L ++Y +
Sbjct: 244 THIVNNPDLTVKFQQSPNFGLPYLIKLGNMMVHEQQRVQSRGLVEEYTT 292
>gi|428210200|ref|YP_007094553.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
gi|428012121|gb|AFY90684.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
Length = 475
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 213/273 (78%), Gaps = 12/273 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP F++K+ V ITKN+LN+P ++VPLILG+ G KG+GKSFQC+LVF KMGI
Sbjct: 4 YIAPRFLEKIAVFITKNYLNIPGIRVPLILGVHGRKGEGKSFQCDLVFEKMGIEITHISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+P++L+R RYRE A++I+ +GKMC + INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLLRLRYRETAELIRVRGKMCAIMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPTNVQLPG Y++ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDRS 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ +GI+ D + +I +LVDTF QS+DFF ALR+R+YD+++R +I ++GIE++
Sbjct: 184 DKVGIVAGIYSDDGLSSREIEQLVDTFSNQSVDFFSALRSRIYDEQIRDFIFKIGIEQVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 393
+R+VNS + PP F +PK L +L+E G ++V+E
Sbjct: 244 RRVVNSADRPPEFSKPKFNLSRLIEMGNLMVKE 276
>gi|37783283|gb|AAP72270.1| ribulose-1,5-bisphosphate carboxylase activase [Triticum aestivum]
Length = 201
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 161/201 (80%), Positives = 180/201 (89%)
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 323
ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E +VK+
Sbjct: 1 ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKI 60
Query: 324 VDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKL 383
VDTFPGQSIDFFGALRARVYDDEVRKW++ GIE IGK+LVNS++GP TFEQPKMT++KL
Sbjct: 61 VDTFPGQSIDFFGALRARVYDDEVRKWVTSTGIENIGKKLVNSRDGPVTFEQPKMTVEKL 120
Query: 384 LEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTD 443
LEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K G+FYGK AQQ +PVP GCTD
Sbjct: 121 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGTFYGKGAQQGTLPVPAGCTD 180
Query: 444 PAAANYDPTARSDDGSCNYQF 464
A N+DPTARSDDGSC Y F
Sbjct: 181 QTAKNFDPTARSDDGSCLYTF 201
>gi|443316141|ref|ZP_21045597.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
gi|442784241|gb|ELR94125.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
Length = 461
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 168/297 (56%), Positives = 223/297 (75%), Gaps = 15/297 (5%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YI+P F+DK+ +HITKN+L+LP+V+VP+ILG+ G KG+GK+FQCELV+ +MG+
Sbjct: 4 YISPRFLDKLAIHITKNYLSLPDVRVPVILGVHGRKGEGKTFQCELVYERMGVEVVAISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYREAA++++ +G M L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELVRVRGVMAVLMINDLDAGAGRFDALTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
N TLMNIADNPTNVQLPG Y+ + RVPII TGNDFSTLY PL+RDGRMEKFYW P R
Sbjct: 124 NNTLMNIADNPTNVQLPGSYDDQPIRRVPIIATGNDFSTLYEPLVRDGRMEKFYWMPDRS 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
DRIG+ +GIF D + I +LVDTF Q++DFFGALRAR+YD++VR +I VG++++
Sbjct: 184 DRIGIVAGIFEPDQLGTAAIEQLVDTFSQQAVDFFGALRARIYDEQVRDFIQSVGLDKVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDAND 417
+R+VNS E PTF +P TL L+E G+ +V EQ+ ++ ++L D+Y AL + ND
Sbjct: 244 QRVVNS-ETSPTFTRPTFTLSHLIEVGQQMVIEQQWLQEMRLGDQY--NRALREKND 297
>gi|254422770|ref|ZP_05036488.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
gi|196190259|gb|EDX85223.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
Length = 455
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 162/286 (56%), Positives = 219/286 (76%), Gaps = 13/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP F++K+ VHITKN+L+LP VKVPLILGI G KG+GK+FQCELVF +MG+
Sbjct: 4 YIAPRFLNKLAVHITKNYLDLPQVKVPLILGIHGRKGEGKTFQCELVFERMGVEVVHISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYREAA++++ +G+M L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELVRVRGRMAVLMINDLDAGAGRFDRMTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
N TLMNIADNPTNVQLPG Y+++ PR+PII TGNDF+TLYAPLIRDGRM+KFYW P+ E
Sbjct: 124 NNTLMNIADNPTNVQLPGSYDEKALPRIPIIATGNDFATLYAPLIRDGRMQKFYWQPSEE 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
DR+G+ G+F D + EDI +LV F Q++DFFGA+R+++YD+++ ++I +VGIE++
Sbjct: 184 DRVGIVGGMFAGDGLSAEDIEQLVKQFKDQAVDFFGAVRSQLYDEQITRFIEQVGIEKVA 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
+VN+ + PTF +P TLD L+ G LV+EQ+ V+ + L ++Y
Sbjct: 244 TNVVNTPQK-PTFNRPHFTLDHLVAAGNTLVEEQDRVRTMGLVNEY 288
>gi|158334944|ref|YP_001516116.1| ribulose bisphosphate carboxylase activase [Acaryochloris marina
MBIC11017]
gi|158305185|gb|ABW26802.1| Ribulose bisphosphate carboxylase activase, putative [Acaryochloris
marina MBIC11017]
Length = 416
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 168/292 (57%), Positives = 213/292 (72%), Gaps = 12/292 (4%)
Query: 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI----- 185
G Y++P F+D++ VHITKNF++LP ++VPLILGI G KG+GKSFQCEL+F +MGI
Sbjct: 2 GYYLSPRFLDRLAVHITKNFMDLPGLRVPLILGIHGRKGEGKSFQCELLFEQMGIEPVRM 61
Query: 186 ------NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238
+ +AG+P +LIR RYREAA++IK +GKMC L INDLDAGAGRM TTQYTVN Q
Sbjct: 62 SAGELESPDAGDPVRLIRMRYREAAELIKVRGKMCVLLINDLDAGAGRMDQTTQYTVNTQ 121
Query: 239 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
+VN TLMNIADNPT+VQLPG Y+ + RVPI+VTGNDFSTLYAPL+RDGRM+KFYW P
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSYDTQPIRRVPILVTGNDFSTLYAPLVRDGRMDKFYWQPN 181
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 358
EDR+G+ GIF D + I +LV+ F Q+IDFFGALR+R+YD++VR +I +GI
Sbjct: 182 HEDRLGIVQGIFEPDRLSSSVIEQLVNHFADQAIDFFGALRSRIYDEQVRDFIRNLGIGN 241
Query: 359 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 410
+ LVNS E + P +TLD L+ G +V EQ+ + LA YLS A
Sbjct: 242 VSTYLVNSPERQVQIQPPALTLDYLINLGEAMVGEQDRLHHAGLAQAYLSGA 293
>gi|359457374|ref|ZP_09245937.1| ribulose bisphosphate carboxylase small chain [Acaryochloris sp.
CCMEE 5410]
Length = 416
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 167/292 (57%), Positives = 213/292 (72%), Gaps = 12/292 (4%)
Query: 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI----- 185
G Y++P F+D++ VHITKNF++LP ++VPLILGI G KG+GKSFQCEL+F +MGI
Sbjct: 2 GYYLSPRFLDRLAVHITKNFMDLPGLRVPLILGIHGRKGEGKSFQCELLFEQMGIEPVRM 61
Query: 186 ------NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238
+ +AG+P +LIR RYREAA++IK +GKMC L INDLDAGA RM TTQYTVN Q
Sbjct: 62 SAGELESPDAGDPVRLIRMRYREAAELIKVRGKMCVLLINDLDAGASRMDQTTQYTVNTQ 121
Query: 239 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
+VN TLMNIADNPT+VQLPG Y+ + RVPI+VTGNDFSTLYAPL+RDGRM+KFYW P+
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSYDTQPIRRVPILVTGNDFSTLYAPLVRDGRMDKFYWQPS 181
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 358
EDR+G+ GIF D + I +LV+ F Q+IDFFGALR+R+YD++VR +I +GI
Sbjct: 182 DEDRLGIVQGIFEPDRLSSSVIEQLVNHFADQAIDFFGALRSRIYDEQVRDFIRNLGIGN 241
Query: 359 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 410
+ LVNS E + P + LD L+E G +V EQ+ + LA YLS A
Sbjct: 242 VSTYLVNSPERQVQIQPPALALDYLIELGEAMVGEQDRLHHAGLAQAYLSGA 293
>gi|86605146|ref|YP_473909.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
gi|86553688|gb|ABC98646.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
Length = 407
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/287 (57%), Positives = 214/287 (74%), Gaps = 12/287 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YI P F+ V +H+TKN L LP+V VPLILGI G KG+GK+FQC L+F +M +
Sbjct: 4 YIPPTFLKVVALHLTKNHLPLPDVPVPLILGIHGRKGEGKTFQCNLIFERMKVYAVHISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA++IR RYREAA+ I+K G+M L INDLDAGAGR+ TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARMIRLRYREAAEHIRKFGQMAVLMINDLDAGAGRLNSMTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
+ATLMNIADNPTNVQLPG Y+ + PRVPII TGNDFSTLYAPLIRDGRM KFYW P+R
Sbjct: 124 SATLMNIADNPTNVQLPGSYDPKPLPRVPIIATGNDFSTLYAPLIRDGRMRKFYWEPSRT 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
DRI + GIF+ D + E+I +LVD FP Q+IDFFGALRA++YD++V ++I EVG+E I
Sbjct: 184 DRIHIVHGIFQADGLSLEEIERLVDAFPEQAIDFFGALRAQLYDEQVWQFIQEVGLEGIA 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RL+ SKEG P F P+ +L++L++ G L EQ V+ +L+++YL
Sbjct: 244 FRLLKSKEGAPQFPPPRFSLEQLIQAGHQLKAEQHQVEARRLSEEYL 290
>gi|388505442|gb|AFK40787.1| unknown [Lotus japonicus]
Length = 187
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 162/187 (86%), Positives = 177/187 (94%)
Query: 239 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
MVNATLMNIADNPTNVQLPGMYN+E+NPRVPI+VTGND STLYAPLIRDGRMEKFYWAPT
Sbjct: 1 MVNATLMNIADNPTNVQLPGMYNKEDNPRVPIVVTGNDSSTLYAPLIRDGRMEKFYWAPT 60
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 358
REDRIGVC GIF+TDNV +E +V +VDTFPGQSIDFFGALRARVYDDEVRKWIS VG++
Sbjct: 61 REDRIGVCKGIFQTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDL 120
Query: 359 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDD 418
IGK+LVNSKEGPP FEQPKMTL+KLLEYG MLVQEQENV+RVQLADKYL+EAALG+ANDD
Sbjct: 121 IGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVQEQENVERVQLADKYLNEAALGNANDD 180
Query: 419 AIKNGSF 425
AIK G+F
Sbjct: 181 AIKRGTF 187
>gi|307102907|gb|EFN51173.1| hypothetical protein CHLNCDRAFT_141315 [Chlorella variabilis]
Length = 295
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 186/359 (51%), Positives = 219/359 (61%), Gaps = 94/359 (26%)
Query: 78 DISDDQQDITRGKGMVDTLFQAPMES--GTHYAVMSSYDYISQGLRQYSLDNTLDGLYIA 135
D+SDDQQDI RG+ MVD+LFQ GTH AV+SS +Y+S
Sbjct: 6 DVSDDQQDIARGRDMVDSLFQGFGSGIGGTHNAVLSSTEYLSTA---------------- 49
Query: 136 PAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI---------- 185
GK+FQC L + K+GI
Sbjct: 50 -----------------------------------GKTFQCNLAYKKLGIAPIVMSAGEL 74
Query: 186 -NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATL 244
+GNAGEPAKLIRQRYREA+D+IKKG+MC LFINDLDAGAGRMG TQYTVNNQMVNATL
Sbjct: 75 ESGNAGEPAKLIRQRYREASDVIKKGRMCSLFINDLDAGAGRMGDATQYTVNNQMVNATL 134
Query: 245 MNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 304
MNIADNPTNVQLPG+Y EE PRVPI DRIG
Sbjct: 135 MNIADNPTNVQLPGVYKNEEIPRVPI------------------------------DRIG 164
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLV 364
VC GIF+ DNV + D+ KLVD FPGQSIDFFGA+RARVYDD+V WI G+E IGKRL+
Sbjct: 165 VCMGIFQHDNVDRADVEKLVDAFPGQSIDFFGAIRARVYDDKVHDWIMGTGVENIGKRLI 224
Query: 365 NSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNG 423
NSKEG TF++P M L L++YG +LV+EQENVKRVQLAD+Y+S AAL ++ ++ G
Sbjct: 225 NSKEGKVTFDKPSMDLGTLMKYGNLLVEEQENVKRVQLADEYMSGAALAGSSGSSLPEG 283
>gi|428215450|ref|YP_007088594.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
gi|428003831|gb|AFY84674.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
Length = 435
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 162/286 (56%), Positives = 211/286 (73%), Gaps = 13/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING----- 187
YIAP F++K+ VHITKNFL+LP + PLILGI G KG+GKSFQCELVF +M +
Sbjct: 4 YIAPRFLNKLAVHITKNFLDLPGINAPLILGIHGHKGEGKSFQCELVFQRMKVQAIHLSA 63
Query: 188 ------NAGEPAKLIRQRYREAADII-KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+AG+P++L+R RYREAADII K GK+ L IND+DAGAGR+ TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLVRFRYREAADIITKHGKLAVLMINDIDAGAGRVDSGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPTNVQLPG Y+ E PRVPIIVTGNDF TLYAPL+RDGRM+KFYW P RE
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSEPLPRVPIIVTGNDFGTLYAPLVRDGRMDKFYWEPNRE 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
DR+ + +GIF D + ++ I +LV F GQSIDFF ALRA +YD+++ +I + G ++IG
Sbjct: 184 DRLEIVNGIFTPDGLNRQQIEQLVSKFEGQSIDFFSALRASIYDEQILAFIEQTGFDKIG 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
++ NS E +F +P L+ L+E G +V+EQ++++ ++L Y
Sbjct: 244 LKVANSTE-KHSFIKPDFRLEHLIEKGEQMVKEQQHIQELRLVAAY 288
>gi|125535371|gb|EAY81919.1| hypothetical protein OsI_37097 [Oryza sativa Indica Group]
Length = 360
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 216/473 (45%), Positives = 249/473 (52%), Gaps = 128/473 (27%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEY 61
+A STVGA + L +K + + ++ G S S+ ++I++ + E
Sbjct: 3 SAFSSTVGAPGSGLVVK-------NWLRTA---GYSHHGGRSRCRCRKIMAMAGGSSKEV 52
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR 121
DEEKQT QDRW GLAYDISDDQQDITRGKG+VD+LFQAPM GTH A +
Sbjct: 53 DEEKQTEQDRWKGLAYDISDDQQDITRGKGLVDSLFQAPMGDGTHEARVP---------- 102
Query: 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 181
Q N G + HI+KN + LPN+ QGKSFQCELVFA
Sbjct: 103 QPGSQNVQPGQHHG---------HISKNLMKLPNI-------------QGKSFQCELVFA 140
Query: 182 KMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 230
KMGIN GNAGEPAKLIRQRYREAAD+I KGKMC LFINDLDAG
Sbjct: 141 KMGINLIMMSAGELESGNAGEPAKLIRQRYREAADMINKGKMCLLFINDLDAG------- 193
Query: 231 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR-VPIIVTGNDFSTLYAPLIRDGR 289
V+ + + AD + G +Q PR V + PLIRDGR
Sbjct: 194 RHDAVHGEQPDGE--RDAD-----EHRGQPHQRAAPRDVQPPCPHHRHRQRLLPLIRDGR 246
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
M+KFYWAPTREDRIGVC GIFR+D VP D FP S
Sbjct: 247 MDKFYWAPTREDRIGVCRGIFRSDKVP--------DAFPSTSSG---------------- 282
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
R G+ G +EQENVKRV+LADKYLSE
Sbjct: 283 --------RCGR-------------------------GCTATREQENVKRVRLADKYLSE 309
Query: 410 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 462
AALGDAN D+ G FYGKAAQQ VPVP GCTD AANYDPTARSDDGSC Y
Sbjct: 310 AALGDANHDS---GEFYGKAAQQSPVPVPAGCTDQRAANYDPTARSDDGSCVY 359
>gi|290760300|gb|ADD54590.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Linum usitatissimum]
Length = 178
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 152/178 (85%), Positives = 160/178 (89%), Gaps = 11/178 (6%)
Query: 92 MVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFL 151
MVD+LFQAP +GTHYAVMSSYDYIS+GLR Y DNT+ G YIAPAFMDK+VVHITKNFL
Sbjct: 1 MVDSLFQAPQMAGTHYAVMSSYDYISKGLRTYDFDNTMGGFYIAPAFMDKLVVHITKNFL 60
Query: 152 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRY 200
NLPN+KVPLILG+WGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRY
Sbjct: 61 NLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 120
Query: 201 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
REA+DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG
Sbjct: 121 REASDIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 178
>gi|242077492|ref|XP_002448682.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
gi|241939865|gb|EES13010.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
Length = 433
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 169/347 (48%), Positives = 227/347 (65%), Gaps = 28/347 (8%)
Query: 82 DQQDITRGK--GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAF 138
D ++T G G+VD LF V +DY + R + L G YIAPAF
Sbjct: 90 DNLNVTVGARAGIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEY---LQGDYYIAPAF 143
Query: 139 MDKVVVHITKNFLN--LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI----------- 185
+DKV HI KN++ L N+K+PLILG+WGGKGQGK+FQ EL+F MG+
Sbjct: 144 LDKVACHIVKNYIGHLLNNIKIPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGELE 203
Query: 186 NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATL 244
+ AGEP +LIR RYR A+ +I+ +GK+ CL INDLDAG GR G TQ TVNNQ+ TL
Sbjct: 204 SEKAGEPGRLIRDRYRTASQVIQNQGKLSCLMINDLDAGVGRFG-NTQMTVNNQIAVGTL 262
Query: 245 MNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI 303
MN+ADNP V + + + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW PTRED I
Sbjct: 263 MNLADNPNRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPTREDII 322
Query: 304 GVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKR 362
+ G++R D + E++ ++VDTFP Q++DF+GALR+R YD + +W+ E+ G E++ +
Sbjct: 323 SIVHGMYRKDGLSAEEVARVVDTFPNQALDFYGALRSRTYDRAILEWVEEIGGHEQLRAK 382
Query: 363 LVNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
L+ K+G PTF PK +L+ L+E G LV+EQE + +L+ +Y+
Sbjct: 383 LLKRKKGEELPTFIAPKPSLEALIESGYSLVKEQELIMNSKLSKEYM 429
>gi|449436220|ref|XP_004135891.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 426
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/312 (49%), Positives = 218/312 (69%), Gaps = 20/312 (6%)
Query: 113 YDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQG 171
+DY + R + ++ YIAP FMDKVV H+ KNF+ +L +VKVPLILG+WGGKGQG
Sbjct: 113 FDYRQKVTRTF--EHIQGDYYIAPTFMDKVVCHLVKNFIVHLLDVKVPLILGVWGGKGQG 170
Query: 172 KSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIND 219
KSFQ EL+F MG+ + AGEP KLIR+RYR A+ +++ +GKM CL IND
Sbjct: 171 KSFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 230
Query: 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFS 278
+DAG GR G TQ TVNNQ+V+ TLMN+ADNPT V + + + + R+PII+TGNDFS
Sbjct: 231 IDAGIGRFG-QTQVTVNNQIVSGTLMNLADNPTRVSIGQDWREADILHRIPIILTGNDFS 289
Query: 279 TLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGAL 338
T+YAPLIRDGRMEKFYW P RED + + ++ D + + +V +V+TFP Q++DF+GAL
Sbjct: 290 TIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNTFPNQALDFYGAL 349
Query: 339 RARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQE 395
R+R YD + KW+ ++ G+E++G++L+ + E PTF P+ TL+ LL+ G LV+EQ+
Sbjct: 350 RSRTYDSAISKWVDDIGGVEKLGEKLLRRRKSEKLPTFTPPEQTLEALLKAGYSLVKEQQ 409
Query: 396 NVKRVQLADKYL 407
+ +L+ +Y+
Sbjct: 410 LIMETKLSKEYM 421
>gi|224057192|ref|XP_002299165.1| predicted protein [Populus trichocarpa]
gi|222846423|gb|EEE83970.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 223/335 (66%), Gaps = 25/335 (7%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G+VD+LF V +DY + R + L G YIAP F+DKVV HI KN
Sbjct: 96 GVVDSLFAGNFLGKDSDIV---FDYRQKVTRSFEY---LQGDYYIAPLFLDKVVCHIVKN 149
Query: 150 FL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIR 197
+L + NVKVPLILGIWGGKGQGKSFQ EL+F +G+ + AGEP +LIR
Sbjct: 150 YLAHRLNVKVPLILGIWGGKGQGKSFQTELIFQTLGVEPVIMSAGELESERAGEPGRLIR 209
Query: 198 QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
+RYR A+ +++ +GKM CL INDLDAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 ERYRTASQVVQNQGKMSCLMINDLDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 268
Query: 257 PGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 315
+ + + RVPIIVTGNDFST+YAPLIRDGRMEKFYW P RED + + ++ D +
Sbjct: 269 GQDWRESDITNRVPIIVTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGI 328
Query: 316 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPT 372
++++V +V+ FP Q++DF+GALR+R YD + KW+ ++ GIE +GK+L+ K E P
Sbjct: 329 SRDEVVSIVNKFPNQALDFYGALRSRTYDRSISKWVDDIGGIENLGKQLLRRKKDEKLPE 388
Query: 373 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
F P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 389 FTPPEQTMEALLESGHSLIREQQLIMETKLSKEYM 423
>gi|116310848|emb|CAH67790.1| OSIGBa0132E09-OSIGBa0108L24.4 [Oryza sativa Indica Group]
Length = 441
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 167/335 (49%), Positives = 220/335 (65%), Gaps = 25/335 (7%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G+VD LF V +DY + R + L G YIAP F+DKV HI KN
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEY---LQGDYYIAPLFLDKVACHIVKN 162
Query: 150 FL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIR 197
+L ++ +K+PLILGIWGGKGQGK+FQ EL+F MG+ + AGEP +LIR
Sbjct: 163 YLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIR 222
Query: 198 QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
RYR A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 223 DRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSI 281
Query: 257 PGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 315
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D +
Sbjct: 282 GQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYIKDGL 341
Query: 316 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PT 372
ED+ K+VDTFP Q++DF+GALR+R YD + +W+ E+ G E++ ++L+ K+G PT
Sbjct: 342 SFEDVSKIVDTFPNQALDFYGALRSRTYDRAILQWVEEIGGHEQLNEKLLKRKKGEELPT 401
Query: 373 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
F PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 402 FIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 436
>gi|225443213|ref|XP_002270825.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Vitis vinifera]
Length = 442
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 153/292 (52%), Positives = 205/292 (70%), Gaps = 18/292 (6%)
Query: 133 YIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------ 185
YIAP FMDKVV HI KN++ +L N VPLILGIWGGKGQGKSFQ EL+F MGI
Sbjct: 147 YIAPVFMDKVVCHIVKNYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 206
Query: 186 -----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 239
+ AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 207 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFG-NTQVTVNNQI 265
Query: 240 VNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
TLMN++DNPT V + + + + RVPIIVTGNDFST+YAPLIRDGRM+KFYW PT
Sbjct: 266 AVGTLMNLSDNPTRVSIGQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKFYWQPT 325
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIE 357
ED I + ++ D + ++ +V++VDTFP Q++DF+GALR+R YD + KW+ ++ G+E
Sbjct: 326 HEDIINIVDRMYEKDGISRDAVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVE 385
Query: 358 RIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
+G +L+ + E P F PK T+D LLE G L++EQ+ + +L+ +Y+
Sbjct: 386 NLGNKLLRRRKDEKLPVFVPPKQTIDALLESGYSLIKEQQLIMETKLSKEYM 437
>gi|115461056|ref|NP_001054128.1| Os04g0658300 [Oryza sativa Japonica Group]
gi|38346401|emb|CAE04234.2| OSJNBa0011F23.7 [Oryza sativa Japonica Group]
gi|113565699|dbj|BAF16042.1| Os04g0658300 [Oryza sativa Japonica Group]
Length = 441
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 167/335 (49%), Positives = 220/335 (65%), Gaps = 25/335 (7%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G+VD LF V +DY + R + L G YIAP F+DKV HI KN
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEY---LQGDYYIAPLFLDKVACHIVKN 162
Query: 150 FL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIR 197
+L ++ +K+PLILGIWGGKGQGK+FQ EL+F MG+ + AGEP +LIR
Sbjct: 163 YLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIR 222
Query: 198 QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
RYR A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 223 DRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSI 281
Query: 257 PGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 315
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D +
Sbjct: 282 GQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGL 341
Query: 316 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PT 372
ED+ K+VDTFP Q++DF+GALR+R YD + +W+ E+ G E++ ++L+ K+G PT
Sbjct: 342 SFEDVSKVVDTFPNQALDFYGALRSRTYDRAILQWVEEIGGHEQLNEKLLKRKKGEELPT 401
Query: 373 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
F PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 402 FIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 436
>gi|297842049|ref|XP_002888906.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
gi|297334747|gb|EFH65165.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
Length = 419
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 161/334 (48%), Positives = 220/334 (65%), Gaps = 23/334 (6%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNF 150
GM+D +F V +DY + R S ++ YIAP+F+DKV VHI KN+
Sbjct: 87 GMIDDVFIGDFLGKDSDIV---FDYRQKATR--SFEHLQGDYYIAPSFLDKVAVHIVKNY 141
Query: 151 LNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQ 198
L N+K+PLILGIWGGKGQGK+FQ EL+F MG+ + AGEP +LIR
Sbjct: 142 LAPSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRD 201
Query: 199 RYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
RYR A+ +I+ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 202 RYRTASQVIQNQGKMSVLMINDIDAGLGRFG-ETQMTVNNQIVVGTLMNLADNPTRVSVG 260
Query: 258 GMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 316
+ + + RVP+IVTGNDFSTLYAPLIR+GRMEKFYW PTRED + + S ++ D +
Sbjct: 261 QEWREADIVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGIS 320
Query: 317 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PTF 373
++D++ +VD FP Q++DF+GALR+R YD + KW+ E G+E +GK L+ SK+ P F
Sbjct: 321 RKDVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKILLRSKKTKEVPQF 380
Query: 374 EQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
P+ T++ LLE G L+ EQ+ + +L+ +Y+
Sbjct: 381 TPPEQTVEALLESGYSLINEQKLIMETKLSKEYM 414
>gi|388517903|gb|AFK47013.1| unknown [Lotus japonicus]
Length = 421
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/346 (47%), Positives = 226/346 (65%), Gaps = 27/346 (7%)
Query: 82 DQQDITRGK--GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY-IAPAF 138
D +I G+ G++D LF V +DY + R + L G Y IAP F
Sbjct: 78 DNMNIAVGQRAGVIDDLFAGNFLGKDSDIV---FDYRQKATRSFQY---LQGYYYIAPLF 131
Query: 139 MDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------N 186
MDKVV HI KN+L +L NVKVPLILGIWGGKGQGK+FQ EL+F MG+ +
Sbjct: 132 MDKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQGKTFQTELIFHAMGMEPVIMSAGELES 191
Query: 187 GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 245
AGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLM
Sbjct: 192 ERAGEPGRLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLM 250
Query: 246 NIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 304
N++DNPT V + + + + R+PIIVTGNDFST+YAPLIRDGRM+KFYW P RED
Sbjct: 251 NLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDKFYWQPNREDIQN 310
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRL 363
+ ++ D + ++++ ++VDTFP Q++DF+GALR+R YD + KW+ ++ G+E G ++
Sbjct: 311 IVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVDDIGGVENFGTKI 370
Query: 364 VNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
+ + + P F P+ T+D LLE G L++EQE V +L+ +Y+
Sbjct: 371 LKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYM 416
>gi|15219376|ref|NP_177454.1| putative Rubisco activase 2 [Arabidopsis thaliana]
gi|13605706|gb|AAK32846.1|AF361834_1 At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|18700270|gb|AAL77745.1| At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|26452888|dbj|BAC43522.1| unknown protein [Arabidopsis thaliana]
gi|332197294|gb|AEE35415.1| putative Rubisco activase 2 [Arabidopsis thaliana]
Length = 432
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 219/334 (65%), Gaps = 23/334 (6%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNF 150
GM+D +F V +DY + R S ++ YIAP+F+DKV VHI KN+
Sbjct: 100 GMIDDVFIGDFLGKDSDIV---FDYRQKATR--SFEHLQGDYYIAPSFLDKVAVHIVKNY 154
Query: 151 LNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQ 198
L N+K+PLILGIWGGKGQGK+FQ EL+F MG+ + AGEP +LIR
Sbjct: 155 LAPSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRD 214
Query: 199 RYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
RYR A+ +I+ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 215 RYRTASQVIQNQGKMSVLMINDIDAGLGRFG-ETQMTVNNQIVVGTLMNLADNPTRVSVG 273
Query: 258 GMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 316
+ + + RVP+IVTGNDFSTLYAPLIR+GRMEKFYW PTRED + + S ++ D +
Sbjct: 274 QEWREADMVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGIS 333
Query: 317 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PTF 373
++D++ +VD FP Q++DF+GALR+R YD + KW+ E G+E +GK L+ K+ P F
Sbjct: 334 RKDVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKVLLRRKKTQEVPQF 393
Query: 374 EQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
P+ T++ LLE G L+ EQ+ + +L+ +Y+
Sbjct: 394 TAPEQTVEALLESGYSLINEQKLIMETKLSKEYM 427
>gi|168063726|ref|XP_001783820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664649|gb|EDQ51360.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 458
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 167/348 (47%), Positives = 223/348 (64%), Gaps = 26/348 (7%)
Query: 82 DQQDITRG--KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFM 139
D +IT G GM+D+LF V +++ + D YIAPAFM
Sbjct: 104 DNLNITVGARTGMIDSLFTGDFLGKEADIVFKYRQKVTRSFEHITGD-----YYIAPAFM 158
Query: 140 DKVVVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NG 187
DKVV HI KN+L + KVPLILG+WGGKGQGKSFQ EL+F MGI +
Sbjct: 159 DKVVTHIVKNYLAAQIDGKVPLILGVWGGKGQGKSFQTELIFKAMGIEPIIMSAGEMESE 218
Query: 188 NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
AGEP KLIR+RYR A +I +GKM CL INDLDAG GR TQ TVNNQMV TLMN
Sbjct: 219 WAGEPGKLIRERYRAAHLVINNQGKMSCLMINDLDAGIGRFE-NTQMTVNNQMVVGTLMN 277
Query: 247 IADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 305
+ADNP V + + + + RVPIIVTGNDFST++APLIRDGRM+KFYW PTR+D + +
Sbjct: 278 LADNPNRVSVGQAWREADIVNRVPIIVTGNDFSTIWAPLIRDGRMDKFYWQPTRDDLVKI 337
Query: 306 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLV 364
+++ D + + DI ++DTFP Q++DF+GALR+R YD V +W++E+ G E+IG +L+
Sbjct: 338 VYQMYKKDGLSEADIGFIIDTFPNQALDFYGALRSRTYDKHVLEWVNEIGGAEQIGPKLL 397
Query: 365 NSKEGP---PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
K+G P F P+ +D L++ G LV+EQ V ++L+D+Y+ +
Sbjct: 398 RRKKGDAPLPEFIAPEQNVDDLIKAGYELVEEQNMVNNMKLSDEYMKK 445
>gi|449491096|ref|XP_004158798.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 427
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 153/313 (48%), Positives = 216/313 (69%), Gaps = 21/313 (6%)
Query: 113 YDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQG 171
+DY + R + ++ YIAP FMDKVV H+ KNF+ +L +VKVPLILG+WGGKGQG
Sbjct: 113 FDYRQKVTRTF--EHIQGDYYIAPTFMDKVVCHLVKNFIVHLLDVKVPLILGVWGGKGQG 170
Query: 172 KSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIND 219
KSFQ EL+F MG+ + AGEP KLIR+RYR A+ +++ +GKM CL IND
Sbjct: 171 KSFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 230
Query: 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFS 278
+DAG GR G TQ TVNNQ+V+ TLMN+ADNPT V + + + + R+PII+TGNDFS
Sbjct: 231 IDAGIGRFG-QTQVTVNNQIVSGTLMNLADNPTRVSIGQDWREADILHRIPIILTGNDFS 289
Query: 279 TLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ-SIDFFGA 337
T+YAPLIRDGRMEKFYW P RED + + ++ D + + +V +V+TFP Q + F+GA
Sbjct: 290 TIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNTFPNQGNFGFYGA 349
Query: 338 LRARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQ 394
LR+R YD + KW+ ++ G+E++G++L+ + E PTF P+ TL+ LL+ G LV+EQ
Sbjct: 350 LRSRTYDSAISKWVDDIGGVEKLGEKLLRRRKSEKLPTFTPPEQTLEALLKAGYSLVKEQ 409
Query: 395 ENVKRVQLADKYL 407
+ + +L+ +Y+
Sbjct: 410 QLIMETKLSKEYM 422
>gi|356550687|ref|XP_003543716.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 428
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 163/346 (47%), Positives = 226/346 (65%), Gaps = 27/346 (7%)
Query: 82 DQQDITRGK--GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAF 138
D +I G+ G++D+LF V +DY + R + L G YIAP F
Sbjct: 85 DNMNIAVGQRAGVIDSLFAGNFLGKDSDIV---FDYRQKVTRSFQY---LQGDYYIAPLF 138
Query: 139 MDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------N 186
MDKVV HI KN+L + N KVPLILGIWGGKGQGKSFQ EL+F MGI +
Sbjct: 139 MDKVVCHIVKNYLARVLNTKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 198
Query: 187 GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 245
AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLM
Sbjct: 199 ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLM 257
Query: 246 NIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 304
N++DNPT V + + + + R+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED +
Sbjct: 258 NLSDNPTRVSVGQDWRESDVTNRIPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILN 317
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRL 363
+ ++ D++ ++++ ++V+TFP Q++DF+GALR+R YD + KWI ++ G+E G +L
Sbjct: 318 IVHRMYEKDSISRDEVERVVNTFPNQALDFYGALRSRTYDRSILKWIDDIGGVENFGNKL 377
Query: 364 VNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
+ + + P F P+ T+D LLE G L++EQ + +L+ +Y+
Sbjct: 378 LKRRKDQSLPVFIPPEQTVDALLESGYSLIKEQRLIMETKLSKEYM 423
>gi|305855727|gb|ADM67704.1| putative rubisco activase [Pieris japonica var. taiwanensis]
Length = 171
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 142/170 (83%), Positives = 155/170 (91%), Gaps = 11/170 (6%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DNT+DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNTVDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|71834884|gb|AAZ41846.1| Rubisco activase 2 [Mesembryanthemum crystallinum]
Length = 456
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 159/346 (45%), Positives = 225/346 (65%), Gaps = 27/346 (7%)
Query: 82 DQQDITRGK--GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAF 138
D +IT G G++D LF V +DY + R + L G YIAP F
Sbjct: 113 DNTNITVGARPGVIDDLFTGNFLGRDSDIV---FDYRQKVTRSFEY---LRGDYYIAPVF 166
Query: 139 MDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------N 186
+D+VV HI KNF+ +L NVKVPLILGIWGGKGQGK+FQ EL+F MG+ +
Sbjct: 167 LDQVVCHIVKNFMAHLLNVKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGEMES 226
Query: 187 GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 245
AGEP +LIR+RYR A+ +++ GK+ CL INDLDAG GR G TQ TVNNQ TLM
Sbjct: 227 EKAGEPGRLIRERYRAASQVVQNHGKLSCLMINDLDAGIGRFG-NTQVTVNNQTAAGTLM 285
Query: 246 NIADNPTNVQLPGMYNQEENP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 304
N+ADNPT V + + + + R+P+IVTGNDFST+YAPLIRDGRM+KFYW PT +D +
Sbjct: 286 NLADNPTRVSIGQKWRENDTTHRIPVIVTGNDFSTIYAPLIRDGRMDKFYWQPTHDDIVN 345
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRL 363
+ ++ D + +++V +V+TFP Q++DF+GA+R+R YD V KW+ ++ GI+ +G +L
Sbjct: 346 IVHRMYEKDGISWDEVVSIVNTFPNQALDFYGAMRSRTYDRSVLKWVDDIGGIDNLGAKL 405
Query: 364 VNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
+ ++G P F P+ ++ LLE G L++EQ+ + + +LA +Y+
Sbjct: 406 LQLRKGDELPVFVPPEQNVEALLESGYSLLREQQLINKTKLAKEYM 451
>gi|305855733|gb|ADM67707.1| putative rubisco activase [Rhododendron mariesii]
Length = 171
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 142/170 (83%), Positives = 153/170 (90%), Gaps = 11/170 (6%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYN+EENP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 171
>gi|305855755|gb|ADM67718.1| putative rubisco activase [Rhododendron rubropunctatum]
gi|305855757|gb|ADM67719.1| putative rubisco activase [Rhododendron morii]
gi|305855759|gb|ADM67720.1| putative rubisco activase [Rhododendron pseudochrysanthum]
Length = 171
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 142/170 (83%), Positives = 154/170 (90%), Gaps = 11/170 (6%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AVMSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AVMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|338807894|gb|AEJ07671.1| putative rubisco activase [Rhododendron wiltonii]
Length = 171
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 141/170 (82%), Positives = 154/170 (90%), Gaps = 11/170 (6%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|218195741|gb|EEC78168.1| hypothetical protein OsI_17750 [Oryza sativa Indica Group]
Length = 456
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 167/350 (47%), Positives = 220/350 (62%), Gaps = 40/350 (11%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G+VD LF V +DY + R + L G YIAP F+DKV HI KN
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEY---LQGDYYIAPLFLDKVACHIVKN 162
Query: 150 FL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIR 197
+L ++ +K+PLILGIWGGKGQGK+FQ EL+F MG+ + AGEP +LIR
Sbjct: 163 YLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIR 222
Query: 198 QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
RYR A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 223 DRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSI 281
Query: 257 PGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 315
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D +
Sbjct: 282 GQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYIKDGL 341
Query: 316 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---------------WISEV-GIERI 359
ED+ K+VDTFP Q++DF+GALR+R YD + + W+ E+ G E++
Sbjct: 342 SFEDVSKIVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQL 401
Query: 360 GKRLVNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
++L+ K+G PTF PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 402 NEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 451
>gi|222629697|gb|EEE61829.1| hypothetical protein OsJ_16474 [Oryza sativa Japonica Group]
Length = 456
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 167/350 (47%), Positives = 220/350 (62%), Gaps = 40/350 (11%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G+VD LF V +DY + R + L G YIAP F+DKV HI KN
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEY---LQGDYYIAPLFLDKVACHIVKN 162
Query: 150 FL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIR 197
+L ++ +K+PLILGIWGGKGQGK+FQ EL+F MG+ + AGEP +LIR
Sbjct: 163 YLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIR 222
Query: 198 QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
RYR A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 223 DRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSI 281
Query: 257 PGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 315
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D +
Sbjct: 282 GQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGL 341
Query: 316 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---------------WISEV-GIERI 359
ED+ K+VDTFP Q++DF+GALR+R YD + + W+ E+ G E++
Sbjct: 342 SFEDVSKVVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQL 401
Query: 360 GKRLVNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
++L+ K+G PTF PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 402 NEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 451
>gi|305855731|gb|ADM67706.1| putative rubisco activase [Rhododendron ellipticum]
gi|305855735|gb|ADM67708.1| putative rubisco activase [Rhododendron nakaharae]
gi|305855737|gb|ADM67709.1| putative rubisco activase [Rhododendron noriakianum]
gi|305855739|gb|ADM67710.1| putative rubisco activase [Rhododendron kanehirai]
gi|305855741|gb|ADM67711.1| putative rubisco activase [Rhododendron simsii]
gi|305855743|gb|ADM67712.1| putative rubisco activase [Rhododendron oldhamii]
gi|305855745|gb|ADM67713.1| putative rubisco activase [Rhododendron rubropilosum]
gi|338807888|gb|AEJ07668.1| putative rubisco activase [Rhododendron simsii]
gi|338807892|gb|AEJ07670.1| putative rubisco activase [Rhododendron seniavinii]
gi|338807896|gb|AEJ07672.1| putative rubisco activase [Rhododendron simsii]
gi|338807898|gb|AEJ07673.1| putative rubisco activase [Rhododendron scabrum]
Length = 171
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/170 (82%), Positives = 153/170 (90%), Gaps = 11/170 (6%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEDNP 171
>gi|338807890|gb|AEJ07669.1| putative rubisco activase [Rhododendron chihsinianum]
Length = 171
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/170 (82%), Positives = 153/170 (90%), Gaps = 11/170 (6%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEDNP 171
>gi|305855753|gb|ADM67717.1| putative rubisco activase [Rhododendron hyperythrum]
Length = 171
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 141/169 (83%), Positives = 153/169 (90%), Gaps = 11/169 (6%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AVMSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AVMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+E+N
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDN 170
>gi|298204740|emb|CBI25238.3| unnamed protein product [Vitis vinifera]
Length = 440
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 149/292 (51%), Positives = 202/292 (69%), Gaps = 20/292 (6%)
Query: 133 YIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------ 185
YIAP FM + HI KN++ +L N VPLILGIWGGKGQGKSFQ EL+F MGI
Sbjct: 147 YIAPVFM--AMCHIVKNYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 204
Query: 186 -----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 239
+ AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 205 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFG-NTQVTVNNQI 263
Query: 240 VNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
TLMN++DNPT V + + + + RVPIIVTGNDFST+YAPLIRDGRM+KFYW PT
Sbjct: 264 AVGTLMNLSDNPTRVSIGQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKFYWQPT 323
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIE 357
ED I + ++ D + ++ +V++VDTFP Q++DF+GALR+R YD + KW+ ++ G+E
Sbjct: 324 HEDIINIVDRMYEKDGISRDAVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVE 383
Query: 358 RIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
+G +L+ + E P F PK T+D LLE G L++EQ+ + +L+ +Y+
Sbjct: 384 NLGNKLLRRRKDEKLPVFVPPKQTIDALLESGYSLIKEQQLIMETKLSKEYM 435
>gi|305855751|gb|ADM67716.1| putative rubisco activase [Rhododendron formosanum]
Length = 171
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 141/170 (82%), Positives = 153/170 (90%), Gaps = 11/170 (6%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AVMSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AVMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGM N+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMNNKEDNP 171
>gi|357166474|ref|XP_003580722.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Brachypodium distachyon]
Length = 437
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 215/335 (64%), Gaps = 25/335 (7%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G++D LF V +DY + R++ L G YIAP+F+DKV HI KN
Sbjct: 105 GIIDDLFVGKFLGRDSDIV---FDYRQKVTRKFEY---LQGDYYIAPSFLDKVACHIVKN 158
Query: 150 FL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIR 197
+L N N+KVPLILG+WGGKGQGK+FQ EL+F MG+ + AGEP +LIR
Sbjct: 159 YLANNLNIKVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGELESERAGEPGRLIR 218
Query: 198 QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
RYR A+ +I+ +GKM CL INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 219 DRYRTASQVIQNQGKMSCLMINDLDAGVGRFG-NTQMTVNNQIVVGTLMNLADNPTRVSI 277
Query: 257 PGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 315
+ + + RVPII TGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D +
Sbjct: 278 GQKWRESDITHRVPIIATGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYMKDGL 337
Query: 316 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVG---IERIGKRLVNSKEGPPT 372
E++ ++VDTFP Q++DF+GALR+R YD + +W++++G +E PT
Sbjct: 338 SFEEVSRIVDTFPNQALDFYGALRSRTYDQAILQWVNDIGGYEQLGEKLLKKKKREKLPT 397
Query: 373 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
F PK TLD L+E G LV+EQE + +L+ +Y+
Sbjct: 398 FIPPKPTLDALIESGDSLVKEQELIMNSKLSKEYM 432
>gi|305855747|gb|ADM67714.1| putative rubisco activase [Rhododendron breviperulatum]
Length = 171
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 140/170 (82%), Positives = 152/170 (89%), Gaps = 11/170 (6%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLP MYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPCMYNKEDNP 171
>gi|388512327|gb|AFK44225.1| unknown [Medicago truncatula]
Length = 418
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 202/292 (69%), Gaps = 18/292 (6%)
Query: 133 YIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------ 185
YIAP FMDKVV HITKN+L +L N KVPLILGIWGGKGQGK+FQ EL+F MG+
Sbjct: 123 YIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMS 182
Query: 186 -----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 239
+ NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 183 AGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 241
Query: 240 VNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
V TLMN+ DNPT V + + + + R+PIIVTGND ST+YAPLIRDGRM+KFYW P
Sbjct: 242 VVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPN 301
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIE 357
+ED + + ++ D + ++++ K+V TFP Q++DF+GALR+R YD + KW+ ++ G E
Sbjct: 302 QEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKWVDDIGGAE 361
Query: 358 RIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
+ + + + P F P+ T+D LLE G L++EQ+ + +L+ +Y+
Sbjct: 362 SFTSKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYM 413
>gi|305855729|gb|ADM67705.1| putative rubisco activase [Rhododendron ovatum]
Length = 171
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 151/170 (88%), Gaps = 11/170 (6%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN G AGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGKAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
INDL+AGAGRMGGTTQYTVNNQMVNATLMNIA NPT VQLPGMYN+EENP
Sbjct: 122 INDLEAGAGRMGGTTQYTVNNQMVNATLMNIAHNPTCVQLPGMYNKEENP 171
>gi|255543431|ref|XP_002512778.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
gi|223547789|gb|EEF49281.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
Length = 428
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 202/292 (69%), Gaps = 19/292 (6%)
Query: 133 YIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------ 185
YIAP F+ ++ HI KN++ +L NVKVPLILGIWGGKGQGKSFQ ELVF MGI
Sbjct: 134 YIAPVFL-VMICHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELVFQAMGIEPVIMS 192
Query: 186 -----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 239
+ AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 193 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 251
Query: 240 VNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
V TLMN+ DNPT V + + + R+PIIVTGNDFST+YAPLIRDGRMEKF+W P
Sbjct: 252 VVGTLMNLVDNPTRVSTGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMEKFFWQPN 311
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIE 357
+ED + + ++ D + ++++V +V TFP Q++DF+GALR+R YD + KWI ++ G+E
Sbjct: 312 QEDIVNIVHRMYEKDGISRDEVVSIVKTFPNQALDFYGALRSRTYDMSISKWIDDIGGVE 371
Query: 358 RIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
+G +L+ + E P + P+ T++ L E G L++EQ+ + +L+ +Y+
Sbjct: 372 NLGNKLLKRRKNETLPVYTPPEQTVEALFESGYSLIREQQLIMETKLSKEYM 423
>gi|307108081|gb|EFN56322.1| hypothetical protein CHLNCDRAFT_144763 [Chlorella variabilis]
Length = 434
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 213/351 (60%), Gaps = 41/351 (11%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSL---DNTLDGLYIAPAFMDKVVVHIT 147
GM+D++F T + D LR Y +N + YIAP F++K+ +HI
Sbjct: 80 GMIDSIF-------TGNVLGHKSDIADGSLRTYEFRTYNNIVGDYYIAPRFLEKIALHIA 132
Query: 148 KNFLNL-----PNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGE 191
KNFL +VPLILGIWGGKGQGK+FQ EL F K+G+ N AG
Sbjct: 133 KNFLLEFGALDSATRVPLILGIWGGKGQGKTFQTELCFKKLGVEPIIMSAGELENEWAGV 192
Query: 192 PAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 250
P KLIR+RYR AA++ K GK+ CL INDLDAG G TQ TVNNQMV TLMNI DN
Sbjct: 193 PGKLIRERYRRAAEVSKVHGKLSCLMINDLDAGIGHFE-NTQITVNNQMVVGTLMNICDN 251
Query: 251 PTNVQL-PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGI 309
PT + + G + R+PIIVTGNDFST++APL+RDGRM+KFYW PT ED +G+ +
Sbjct: 252 PTRISIGQGWMENDVTRRIPIIVTGNDFSTIFAPLVRDGRMDKFYWQPTEEDLVGILHQM 311
Query: 310 FRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE-----------R 358
++ D + + D+ L+ FPGQ++DFFGALR+ YD ++R+WI + I
Sbjct: 312 YKDDGLSESDMAALLRAFPGQTLDFFGALRSSTYDGQIRQWIKQDVIHGEIAEDNQNMRE 371
Query: 359 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
+G+RL+ +E P FE +TL L+E GR L EQ+ V ++L+D+YL +
Sbjct: 372 LGRRLLR-QEDLPQFEPVDLTLLMLMEEGRRLQAEQDMVNSMRLSDEYLKK 421
>gi|305855749|gb|ADM67715.1| putative rubisco activase [Rhododendron kawakamii]
Length = 171
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/170 (80%), Positives = 150/170 (88%), Gaps = 11/170 (6%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AV+SSY +S GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AVLSSYQNLSTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLF 216
KGQGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
INDLDAGAGRMGGTTQ+TVNNQMVNATLMNIADNPT VQLPG YN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQFTVNNQMVNATLMNIADNPTCVQLPGRYNKEDNP 171
>gi|159885646|dbj|BAF93200.1| RuBisCO activase [Hordeum vulgare]
Length = 158
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 136/158 (86%), Positives = 142/158 (89%), Gaps = 11/158 (6%)
Query: 176 CELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 224
CELVFAKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGA
Sbjct: 1 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGA 60
Query: 225 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 284
GRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+EENPRVPI+VTGNDFSTLYAPL
Sbjct: 61 GRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPL 120
Query: 285 IRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 322
IRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E +VK
Sbjct: 121 IRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 158
>gi|282898324|ref|ZP_06306315.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
gi|281196855|gb|EFA71760.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
Length = 362
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 132/220 (60%), Positives = 172/220 (78%), Gaps = 1/220 (0%)
Query: 188 NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
+AG+PA+LIR RYRE A+++K +GKMC L INDLDAGAGR TQYTVN Q+VNATLMN
Sbjct: 17 DAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMN 76
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 306
IAD+PT+VQLPG Y+ + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P +D++G+
Sbjct: 77 IADSPTDVQLPGSYDAKPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNHDDKVGIV 136
Query: 307 SGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNS 366
GIF D + +I +LV+TFP QSIDFF ALR+R+YD+++R +I E+G +R+ R+VNS
Sbjct: 137 GGIFAEDGLSPVEIEQLVNTFPHQSIDFFSALRSRIYDEQIRDFIHEIGYDRVSMRVVNS 196
Query: 367 KEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
E PP F++P+ TL L+E G ++V EQ++V+ L +Y
Sbjct: 197 MEPPPQFQKPEFTLFHLIEAGNVMVGEQKHVESSHLVAEY 236
>gi|117661805|gb|ABK55669.1| chloroplast rubisco activase [Cucumis sativus]
Length = 150
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/150 (89%), Positives = 139/150 (92%), Gaps = 11/150 (7%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKG 210
LG+WGGKGQG+SFQCELVFAKMGIN GNAGEPAKLIRQRYREAADIIKKG
Sbjct: 1 LGVWGGKGQGRSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 60
Query: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270
KMCCLFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPI
Sbjct: 61 KMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPI 120
Query: 271 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
IVTGNDFSTLYAPLIRDGRM+KFYWAPTRE
Sbjct: 121 IVTGNDFSTLYAPLIRDGRMDKFYWAPTRE 150
>gi|384253471|gb|EIE26946.1| hypothetical protein COCSUDRAFT_11792, partial [Coccomyxa
subellipsoidea C-169]
Length = 404
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 148/330 (44%), Positives = 206/330 (62%), Gaps = 35/330 (10%)
Query: 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFL-----NLPNVKVPLILGIWGGKGQGK 172
+G S N + Y++P F+D V +HI KN++ P+ +VPLILGIWG KGQGK
Sbjct: 67 RGWEFRSFANIVGDYYVSPRFLDAVAMHIVKNWMVDNGAFDPSHRVPLILGIWGPKGQGK 126
Query: 173 SFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDL 220
+FQ EL F K+GI + AG P +LIR RYR AA++ K +G++ CL INDL
Sbjct: 127 TFQTELTFKKLGIEPVVMSAGELESEWAGAPGRLIRDRYRRAAEVAKVRGRLPCLMINDL 186
Query: 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFST 279
DAG G + Q TVNNQMV+ TLMN+ DNP V + ++ + RVPIIVTGNDFST
Sbjct: 187 DAGVG-IQENVQRTVNNQMVSGTLMNLCDNPNRVSVFQVWRDSDLVQRVPIIVTGNDFST 245
Query: 280 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 339
L+APL+RDGRM KFYW P R D + + +++ D + ED L+DTFPGQS+DFFGALR
Sbjct: 246 LFAPLVRDGRMAKFYWEPDRIDLLNILHQMYKEDGLSVEDTQTLLDTFPGQSLDFFGALR 305
Query: 340 ARVYDDEVRKWISE-----------VGIERIGKRLVNS-----KEGPPTFEQPKMTLDKL 383
A YD+++R+WI E + + KRL++ ++ P+FE + L+ L
Sbjct: 306 AATYDNQIRRWIKEEVVKADITDEDANMRELSKRLIDHMHVVRRKDLPSFEPVDLKLEDL 365
Query: 384 LEYGRMLVQEQENVKRVQLADKYLSEAALG 413
L+ G L +EQENV R++L+++Y+ + G
Sbjct: 366 LKEGHRLAEEQENVNRLKLSEEYMKNSGGG 395
>gi|302769017|ref|XP_002967928.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
gi|300164666|gb|EFJ31275.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
Length = 421
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/345 (44%), Positives = 218/345 (63%), Gaps = 25/345 (7%)
Query: 82 DQQDITRG--KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFM 139
D +IT G +GM+D++F V + +++ D YIAPAF+
Sbjct: 74 DNMNITVGARQGMIDSVFVGDFLGKEADIVFAYRQKVTRSFEHLQGD-----YYIAPAFL 128
Query: 140 DKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NG 187
V+ HI KN++ + VPLILG+WGGKGQGK+FQ EL+F MG+ +
Sbjct: 129 --VLTHIVKNYVAEQLDTSVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGEMESE 186
Query: 188 NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
AGEP +LIR RYR AA ++K +GK+ CL IND+DAG GR TQ TVNNQ+V TLMN
Sbjct: 187 RAGEPGRLIRDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFE-NTQMTVNNQIVVGTLMN 245
Query: 247 IADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 305
+ADNPT V + + + + RVPIIVTGNDFSTL+APLIRDGRM+KFYW P+RED I +
Sbjct: 246 LADNPTQVSVGQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGRMDKFYWQPSREDLINI 305
Query: 306 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI-SEVGIERIGKRLV 364
++ D + + D+ +VD FP Q++DF+GAL++R D+E+ KW+ S G E++ +
Sbjct: 306 VYRMYSKDGLSRVDVETIVDKFPNQALDFYGALKSRACDEELWKWLESNGGPEKLNEIFR 365
Query: 365 NSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
SK+ F P+ TL LL+ G LV+EQ+ V +++L+D+Y+ +
Sbjct: 366 QSKKKTIDFNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMKK 410
>gi|302761150|ref|XP_002963997.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
gi|300167726|gb|EFJ34330.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
Length = 421
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/345 (44%), Positives = 217/345 (62%), Gaps = 25/345 (7%)
Query: 82 DQQDITRG--KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFM 139
D +IT G +GM+D +F V + +++ D YIAPAF+
Sbjct: 74 DNMNITVGARQGMIDNVFVGDFLGKEADIVFAYRQKVTRSFEHLQGD-----YYIAPAFL 128
Query: 140 DKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NG 187
V+ HI KN++ + VPLILG+WGGKGQGK+FQ EL+F MG+ +
Sbjct: 129 --VLTHIVKNYVAEQLDTSVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGEMESE 186
Query: 188 NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
AGEP +LIR RYR AA ++K +GK+ CL IND+DAG GR TQ TVNNQ+V TLMN
Sbjct: 187 RAGEPGRLIRDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFE-NTQMTVNNQIVVGTLMN 245
Query: 247 IADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 305
+ADNPT V + + + + RVPIIVTGNDFSTL+APLIRDGRM+KFYW P+RED I +
Sbjct: 246 LADNPTQVSVGQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGRMDKFYWQPSREDLINI 305
Query: 306 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI-SEVGIERIGKRLV 364
++ D + + D+ +VD FP Q++DF+GAL++R D+E+ KW+ S G E++ +
Sbjct: 306 VYRMYSKDGLSRVDVETIVDKFPNQALDFYGALKSRACDEELWKWLESNGGPEKLNEIFR 365
Query: 365 NSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
SK+ F P+ TL LL+ G LV+EQ+ V +++L+D+Y+ +
Sbjct: 366 QSKKKTIDFNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMKK 410
>gi|169635155|gb|ACA58354.1| rubisco activase 2 [Arachis diogoi]
Length = 160
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 137/159 (86%), Positives = 149/159 (93%)
Query: 306 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVN 365
C+GIFRTDNVP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+S VG++ +GK+LVN
Sbjct: 2 CTGIFRTDNVPPEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGVDGVGKKLVN 61
Query: 366 SKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 425
SKEGPPTFEQPKMTL KLLEYG MLVQEQENVKRVQLADKYL+EAALGDAN DAIK+GSF
Sbjct: 62 SKEGPPTFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLNEAALGDANQDAIKSGSF 121
Query: 426 YGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
YGKAAQQ+ VPVPEGCTDP A+N+DPTARSDDG+C Y F
Sbjct: 122 YGKAAQQIGVPVPEGCTDPNASNFDPTARSDDGTCLYTF 160
>gi|358346465|ref|XP_003637288.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355503223|gb|AES84426.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 459
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 146/333 (43%), Positives = 202/333 (60%), Gaps = 59/333 (17%)
Query: 133 YIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------ 185
YIAP FMDKVV HITKN+L +L N KVPLILGIWGGKGQGK+FQ EL+F MG+
Sbjct: 123 YIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMS 182
Query: 186 -----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 239
+ NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 183 AGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 241
Query: 240 VNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
V TLMN+ DNPT V + + + + R+PIIVTGND ST+YAPLIRDGRM+KFYW P
Sbjct: 242 VVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPN 301
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK--------- 349
+ED + + ++ D + ++++ K+V TFP Q++DF+GALR+R YD + K
Sbjct: 302 QEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKGVELEEKPL 361
Query: 350 --------------------------------WISEV-GIERIGKRLVNSK--EGPPTFE 374
W+ ++ G E + + + + P F
Sbjct: 362 SKESPVSYLLCTSNAVGITHTDRLIPQHLPTPWVDDIGGAESFASKFLKRRKDQNLPVFI 421
Query: 375 QPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
P+ T+D LLE G L++EQ+ + +L+ +Y+
Sbjct: 422 PPEQTIDALLESGYSLLKEQQLIMETKLSKEYM 454
>gi|19387266|gb|AAL87177.1|AF480497_5 putative rubisco activase [Oryza sativa Japonica Group]
Length = 435
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 157/349 (44%), Positives = 205/349 (58%), Gaps = 59/349 (16%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G+VD LF V +DY + R + L G YIAP F+DKV
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEY---LQGDYYIAPLFLDKV------- 155
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQ 198
GIWGGKGQGK+FQ EL+F MG+ + AGEP +LIR
Sbjct: 156 -------------GIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRD 202
Query: 199 RYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
RYR A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 203 RYRTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSIG 261
Query: 258 GMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 316
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D +
Sbjct: 262 QKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGLS 321
Query: 317 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---------------WISEV-GIERIG 360
ED+ K+VDTFP Q++DF+GALR+R YD + + W+ E+ G E++
Sbjct: 322 FEDVSKVVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQLN 381
Query: 361 KRLVNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
++L+ K+G PTF PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 382 EKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 430
>gi|37522136|ref|NP_925513.1| ribulose-bisphosphate carboxylase activase, partial [Gloeobacter
violaceus PCC 7421]
gi|35213136|dbj|BAC90508.1| ribulose-bisphosphate carboxylase activase [Gloeobacter violaceus
PCC 7421]
Length = 294
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 128/284 (45%), Positives = 184/284 (64%), Gaps = 14/284 (4%)
Query: 129 LDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-- 186
+ G +I F D++++HI KN+ LP V+ PLILGI G KG+GKSF + V ++ N
Sbjct: 1 MAGYFIPDRFRDRIILHIAKNYAALPKVQTPLILGIHGPKGEGKSFMVDRVLQELQANVI 60
Query: 187 ---------GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVN 236
+AGEP +LIR RYREAA+++K +G++ + I+D+DAGAG TTQYTVN
Sbjct: 61 VISSSELESPDAGEPGRLIRLRYREAAELVKVRGRVAAIVIHDIDAGAGFWSATTQYTVN 120
Query: 237 NQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 296
Q+VNA LM IADNPTNVQLPG Y+ PR+P +VTGNDFS LYAPL+RDGRM KF W
Sbjct: 121 TQLVNAALMAIADNPTNVQLPGSYDPTPLPRIPFVVTGNDFSKLYAPLVRDGRMSKFSWE 180
Query: 297 PTREDRIGVCSGIFRTDNVP--KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV 354
PT ++ + + +F D + D+ +L+ F Q +DFF A+R+R YDD + + +
Sbjct: 181 PTFAEKSEIVAHLFAEDGAALGRYDLERLIQRFGAQPVDFFAAIRSRAYDDMLLQQVKAW 240
Query: 355 GIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVK 398
G+E + + LVN PP FE ++ LD+ L +G ++ +Q+ ++
Sbjct: 241 GLENVSRNLVNHGGQPPRFEAVRLDLDRCLRWGEQIMSDQQAIE 284
>gi|168812226|gb|ACA30289.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
alpha 2 [Cupressus sempervirens]
Length = 145
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 136/145 (93%)
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDI 320
N+E+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFRTDN+ I
Sbjct: 1 NKEDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDNISDAAI 60
Query: 321 VKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTL 380
VK+VD+FPGQSI+FFGALRARVYDDEVRKWI EVG+E IGK+LVNS++GPPTFE+P MT+
Sbjct: 61 VKIVDSFPGQSINFFGALRARVYDDEVRKWIGEVGVEGIGKKLVNSRDGPPTFEKPAMTV 120
Query: 381 DKLLEYGRMLVQEQENVKRVQLADK 405
+KLLEYG MLV+EQENVKRVQLADK
Sbjct: 121 EKLLEYGNMLVKEQENVKRVQLADK 145
>gi|156106226|gb|ABU49419.1| rubisco activase [Camellia sinensis]
Length = 139
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 119/130 (91%), Positives = 125/130 (96%)
Query: 187 GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
GNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN
Sbjct: 9 GNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 68
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 306
IADNPT+VQLPGMYN+E+N RVPIIVTGNDFSTLYAPLIRDGRMEK +WAP REDRIGVC
Sbjct: 69 IADNPTSVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKLHWAPNREDRIGVC 128
Query: 307 SGIFRTDNVP 316
GIFRTDN P
Sbjct: 129 MGIFRTDNCP 138
>gi|159491655|ref|XP_001703775.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
gi|158270456|gb|EDO96301.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
Length = 533
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 135/314 (42%), Positives = 187/314 (59%), Gaps = 33/314 (10%)
Query: 125 LDNTLDGLYIAPAFMDKVVVHITKNFL-----NLPNVKVPLILGIWGGKGQGKSFQCELV 179
+N + Y+APAF+ KV +H+ KN+L N +VPLILGIWG KG GK+FQ EL
Sbjct: 157 FNNIVGDYYVAPAFLMKVAMHMAKNYLFDLGAMSANTRVPLILGIWGEKGMGKTFQTELA 216
Query: 180 FAKMGI-----------NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRM 227
K+G + AG P KLIR+RYR+A+++ K +GKM L I+D+DAG G
Sbjct: 217 LKKLGAETVVMSSGELEHEWAGTPGKLIRERYRKASEMSKVRGKMTALLIHDIDAGLGHF 276
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGM--YNQEENPRVPIIVTGNDFSTLYAPLI 285
Q TVNNQ+V TLMNI DNP NV G + R PIIVTGNDFS ++APLI
Sbjct: 277 D-HVQVTVNNQIVIGTLMNICDNP-NVVSTGQDWFAVSRIRRTPIIVTGNDFSKMFAPLI 334
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRM+K+YW PTRED + + +++ D + + D+ L+D F Q +DF+GALRA YD+
Sbjct: 335 RDGRMDKYYWKPTREDMVNIVLQMYQDDGITRRDVEALLDRFRHQPLDFYGALRASTYDE 394
Query: 346 EVRKWISE-----------VGIERIGKRLVN-SKEGPPTFEQPKMTLDKLLEYGRMLVQE 393
++R WI + + K L++ + P FE ++TLD L+ G L E
Sbjct: 395 QIRDWIKTDVTGEEFIADAANLSNMAKTLLSVDRSEMPKFEPVRLTLDMLVAEGERLEME 454
Query: 394 QENVKRVQLADKYL 407
Q+ V +L+++YL
Sbjct: 455 QQQVNDHKLSEQYL 468
>gi|303281738|ref|XP_003060161.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458816|gb|EEH56113.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 498
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 214/385 (55%), Gaps = 42/385 (10%)
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYA--VMSSYDYI 116
+E + T +D L S+ + ++ KG+VD +F +GT A V+ + I
Sbjct: 78 AEETHARGTGEDYLYELGRQSSNLRTEVGARKGVVDDVF-----AGTANANFVLGADADI 132
Query: 117 SQGLRQY----SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGK 172
+ G +Y SL N +DG Y+ P FMDKV VH+ KN L +VPLILGIWG KG GK
Sbjct: 133 ATGELRYTEARSLTNVVDGCYVPPRFMDKVCVHLVKNHLAEGVGQVPLILGIWGEKGCGK 192
Query: 173 SFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIKK--------GKMC 213
S+ EL M + AG P + IR+RYR A+ ++ + G++
Sbjct: 193 SYTLELCLRAMRASPIIVSAGELEDEWAGAPGRRIRERYRAASRLMSQARSISTLTGRLA 252
Query: 214 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP--RVPII 271
CL INDLDAGAG T Q TVN QMV TLMN+ D+PT+V + +E+ RVPII
Sbjct: 253 CLVINDLDAGAGTYRAT-QKTVNMQMVMGTLMNLCDHPTSVSVGAEEWREDRELRRVPII 311
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQS 331
+TGND STLYAPL+RDGRM+KF WAP+ ++R + V D ++LV F Q+
Sbjct: 312 ITGNDLSTLYAPLLRDGRMDKFMWAPSIDERAAAVHAVMADAGVTARDALELVRAFSNQA 371
Query: 332 ---IDFFGALRARVYDDEVRKWISEVGIER-IGKRLV----NSKEGPPT-FEQPKMTLDK 382
+DFFGAL AR D V +WI+ G R +G L+ +++ P ++TL+
Sbjct: 372 RSPLDFFGALHARTVDAAVLEWIARNGGARGMGDALLRGDARTRKAPSVDRSSSRLTLEA 431
Query: 383 LLEYGRMLVQEQENVKRVQLADKYL 407
LLE GR L +EQ+ V V+L D+Y+
Sbjct: 432 LLEIGRELEREQQRVLDVRLVDEYM 456
>gi|47176692|gb|AAT12492.1| putative RuBisCo activase protein [Zantedeschia hybrid cultivar]
Length = 244
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/225 (51%), Positives = 158/225 (70%), Gaps = 6/225 (2%)
Query: 188 NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+ TLMN
Sbjct: 16 NAGEPGRLIRERYRTASQVVQNQGKMSCLTINDIDAGLGRFG-NTQVTVNNQIAVGTLMN 74
Query: 247 IADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 305
++DNPT V + + + + R+P+IVTGNDFSTLYAPLIRDGRMEKFYW PT ED I +
Sbjct: 75 LSDNPTRVSIGQKWRESDVTHRIPVIVTGNDFSTLYAPLIRDGRMEKFYWQPTHEDIINI 134
Query: 306 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLV 364
++ D + ++ + +VD+FP Q++DF+GALR+R YD KWI E+ G E + +L+
Sbjct: 135 VQRMYEKDGISRDAVESIVDSFPNQALDFYGALRSRTYDKSTLKWIDEIGGYENLSDKLL 194
Query: 365 NS-KEGP-PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
KEG PTF PK TL+ LLE G L++EQE + +L+ +Y+
Sbjct: 195 RERKEGKLPTFVPPKQTLEALLESGHSLIEEQELIMNTKLSKEYM 239
>gi|5903100|gb|AAD55658.1|AC008017_31 Highly similar to ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Arabidopsis thaliana]
Length = 245
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/224 (50%), Positives = 158/224 (70%), Gaps = 6/224 (2%)
Query: 189 AGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 247
AGEP +LIR RYR A+ +I+ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN+
Sbjct: 18 AGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFG-ETQMTVNNQIVVGTLMNL 76
Query: 248 ADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 306
ADNPT V + + + + RVP+IVTGNDFSTLYAPLIR+GRMEKFYW PTRED + +
Sbjct: 77 ADNPTRVSVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIV 136
Query: 307 SGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVN 365
S ++ D + ++D++ +VD FP Q++DF+GALR+R YD + KW+ E G+E +GK L+
Sbjct: 137 SRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKVLLR 196
Query: 366 SKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
K+ P F P+ T++ LLE G L+ EQ+ + +L+ +Y+
Sbjct: 197 RKKTQEVPQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEYM 240
>gi|145346081|ref|XP_001417523.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577750|gb|ABO95816.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 381
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/307 (42%), Positives = 177/307 (57%), Gaps = 21/307 (6%)
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLN----LPNVKVPLILGIWGGKGQGKSFQC 176
R++ LDG ++ F ++V H+ KN L L LILGIWG KG GK+
Sbjct: 75 REFRTFAALDGFHVPERFAERVATHVVKNLLKDKGALGATSPALILGIWGHKGCGKTMNV 134
Query: 177 ELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGA 224
EL KMG+ + AGEP ++R+RY AA +++ GK+ CL IND+DAG
Sbjct: 135 ELACKKMGLQPIVTSAGELEDSTAGEPGAMLRRRYLTAARAMRETGKLSCLIINDIDAGI 194
Query: 225 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY---NQEENPRVPIIVTGNDFSTLY 281
G+ TVNNQ+ + TLMNI DNPT V ++ ++ N RVPIIVTGNDFS LY
Sbjct: 195 GKFKDDLG-TVNNQITHGTLMNICDNPTIVSEGLVWRTDSKSTNARVPIIVTGNDFSRLY 253
Query: 282 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 341
APL RDGRM+ + W PT ++ + + + + D + LV TFP Q +DFFGALRAR
Sbjct: 254 APLTRDGRMDLWMWEPTSQELVEMIHAMMKDDGLTTACCETLVATFPNQPLDFFGALRAR 313
Query: 342 VYDDEVRKWISEVGIERIGKRLVNSKEGPP-TFEQPKMTLDKLLEYGRMLVQEQENVKRV 400
VYDD V ++ VG++ + LV E +TL++LL GR +V EQENV +
Sbjct: 314 VYDDAVSDFVFNVGLDGLNDSLVGLDERRRLKLGDVTITLERLLACGRNVVGEQENVNNI 373
Query: 401 QLADKYL 407
QLA +Y+
Sbjct: 374 QLAREYM 380
>gi|308803006|ref|XP_003078816.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116057269|emb|CAL51696.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 584
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 187/321 (58%), Gaps = 35/321 (10%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFL----NLPNVKVPLILG 163
A ++S ++ G R S N Y+ FM++V H+ KN L L + K ++LG
Sbjct: 63 ADVASGEHREGGFR--SFGNVEGEFYVPERFMERVATHVAKNLLADRDGLRSAKPAVMLG 120
Query: 164 IWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIKK-GK 211
IWG KG GK+F EL +MG+ +G AGEP ++R+RY AA +++ G+
Sbjct: 121 IWGHKGCGKTFNVELACKRMGLMPIVTSAGELEDGTAGEPGAMLRRRYLTAARAMRETGR 180
Query: 212 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE---NPRV 268
+ CL IND+DAG GR TVNNQ+ + TLMNI DNPT V + + N RV
Sbjct: 181 LSCLIINDIDAGIGRFRDDLG-TVNNQITHGTLMNICDNPTLVSEGNAWRHDAKMTNARV 239
Query: 269 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC-SGIFRTDNVPKEDIVKLVDTF 327
PIIVTGNDFS LYAPL RDGRM+ W +C + I + D + ++D LVDTF
Sbjct: 240 PIIVTGNDFSRLYAPLTRDGRMD--LW---------ICYTAITKDDGLSEKDCETLVDTF 288
Query: 328 PGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGP-PTFEQPKMTLDKLLEY 386
P Q +DFFGA+RARVYDD VR +I +VG+ + + LV E T + +L++L++
Sbjct: 289 PQQPLDFFGAIRARVYDDAVRDFILDVGLVGMNEALVGGVESKRKTLGKVNASLERLIQA 348
Query: 387 GRMLVQEQENVKRVQLADKYL 407
G L +EQENV +QLA +Y+
Sbjct: 349 GHELCEEQENVSNIQLAREYM 369
>gi|255078274|ref|XP_002502717.1| predicted protein [Micromonas sp. RCC299]
gi|226517982|gb|ACO63975.1| predicted protein [Micromonas sp. RCC299]
Length = 396
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/292 (42%), Positives = 175/292 (59%), Gaps = 35/292 (11%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLR---QYSLDNTLDGLYIAPAFMDKVVVHIT 147
G+VD +F ++ + + + + D S LR + S +N + ++ F+D+V +HI
Sbjct: 108 GVVDDVFAG--KNNSKFNLGADSDIASGKLRYTMERSFNNLVGEFHVPKQFVDRVALHIA 165
Query: 148 KNFL-----------NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------- 186
KN L L +VPLILGIWG KG GK+F EL +G++
Sbjct: 166 KNLLMDSTNPGVGENALGLTRVPLILGIWGSKGCGKTFNLELACKALGVHPVVMSAGELE 225
Query: 187 -GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATL 244
AGEP +LIR+RYR AA+I+K +GK CL IND+DAG G TQ TVN QMV TL
Sbjct: 226 DEWAGEPGRLIRRRYRHAAEIMKVRGKATCLIINDIDAGVGWFK-QTQATVNTQMVMGTL 284
Query: 245 MNIADNPTNV------QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 298
MNI D+P V ++ + E RVPII+TGND STLYAPL+RDGRM+KFYW+PT
Sbjct: 285 MNICDHPNFVSNEEDDEIHAYRDDEYIRRVPIIITGNDLSTLYAPLLRDGRMDKFYWSPT 344
Query: 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 350
RED + +++ D+VP+ + +LV + Q +DFFGA+R+R+YD+ + +W
Sbjct: 345 REDICDMVHAMYKDDDVPRATVERLVQAYSHQPLDFFGAIRSRMYDEAIARW 396
>gi|412986205|emb|CCO17405.1| predicted protein [Bathycoccus prasinos]
Length = 596
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 170/303 (56%), Gaps = 24/303 (7%)
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKV---------PLILGIWGGKGQGKSFQCELVF 180
D + ++++ +TKN+L K PL+LGIWGGKG GKSF EL
Sbjct: 76 DDFTVPERLLERIGTFLTKNYLMHYQAKTFMKKRTIVSPLVLGIWGGKGCGKSFNVELAC 135
Query: 181 AKMGI-----------NGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMG 228
AK+G+ + AGEP KL+R+RY A + ++ G CL IND+DAG GR
Sbjct: 136 AKLGVLPIVTSAGELEDATAGEPGKLLRRRYLAAGKMTRETGVPTCLIINDIDAGVGRFK 195
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNV--QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 286
TT TVNNQ+V TLMNIADNPTNV + N+ PRVP+IVTGNDFS LYAPL R
Sbjct: 196 HTTSSTVNNQIVQGTLMNIADNPTNVYEDTSIVGNRASVPRVPVIVTGNDFSRLYAPLAR 255
Query: 287 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 346
DGRM+KF+W P+RE+ +G+ + IF + K D KLV FP Q +DFF A+R R D
Sbjct: 256 DGRMDKFFWEPSREEIVGIMTPIFAQHGLDKRDTEKLVSHFPNQPLDFFSAVRNRAIDAF 315
Query: 347 VRKWISEVGIERIGKRL-VNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
V + E + L N + ++ + L R + EQ+NV +QL+ +
Sbjct: 316 VLDFCVENEMAFTSALLDANKSSSQSKVSERTVSYETFLSAARYVQNEQQNVNNLQLSRE 375
Query: 406 YLS 408
YL+
Sbjct: 376 YLA 378
>gi|303290017|ref|XP_003064296.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454612|gb|EEH51918.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 505
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 144/383 (37%), Positives = 196/383 (51%), Gaps = 69/383 (18%)
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQY-------SLDNTLDGLYIAPAFMDKV 142
KG++D +F + + S I+ G +Y S N ++ P F+DKV
Sbjct: 122 KGIIDDVFAGTANAKFNLGADSD---IASGRLRYRDVEHVRSFKNLFGDFHVPPLFVDKV 178
Query: 143 VVHITKNFLNLPN------------VKVPLILGIWGGKGQGKSFQCELVFAKMGI----- 185
+H+ KN + + KVPLILG+WG KG GK+F EL + I
Sbjct: 179 SLHVAKNLMADSDNPGASANPLGGLTKVPLILGVWGAKGCGKTFNLELACKALDITPVVM 238
Query: 186 ------NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238
+ AG P +LIR RYR+AA+II+ GKM CL IND+DAG GR TQ TVN Q
Sbjct: 239 SAGELEDEWAGNPGRLIRSRYRKAAEIIRNHGKMSCLIINDIDAGVGRFK-RTQATVNTQ 297
Query: 239 MVNATLMNIADNPTNV------QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
MV TLMN+ D+PT V ++ +E RVPIIVTGND STLYAPL+RDGRMEK
Sbjct: 298 MVMGTLMNLCDHPTQVSNEEDDEIHEYREEERIRRVPIIVTGNDLSTLYAPLLRDGRMEK 357
Query: 293 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI- 351
FYW PTR D + ++R D+V +E + +LV GQ +DFFGA RAR+YD + +W
Sbjct: 358 FYWQPTRTDIADMVHAMYRDDDVSRETVERLVARHEGQPLDFFGATRARMYDRCIVEWAE 417
Query: 352 ---SEVGIERIGKRLVN-----------SKEGP-------------PTFEQPKMTLDKLL 384
SE G+R V ++E P P F + + L+
Sbjct: 418 SFRSETPDPVTGQRHVTKAMGEHLMKNRTRERPDDEHDPGDFVLWKPDFTVQDCSEEALM 477
Query: 385 EYGRMLVQEQENVKRVQLADKYL 407
+ L +EQ V +L++ Y+
Sbjct: 478 RHADDLAREQRLVNEKRLSEDYM 500
>gi|412985424|emb|CCO18870.1| predicted protein [Bathycoccus prasinos]
Length = 1026
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/258 (47%), Positives = 160/258 (62%), Gaps = 31/258 (12%)
Query: 118 QGLRQYSLDNTLDGLYIAPA-FMDKVVVHITKNFL-----NLPNVKVPLILGIWGGKGQG 171
Q +RQ+ N L G Y P F++KV +H+ KNF+ N PNV PLILG+WGGKG G
Sbjct: 159 QEVRQF---NNLVGDYFVPEQFIEKVALHVCKNFMCAAQPNSPNV--PLILGVWGGKGCG 213
Query: 172 KSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIND 219
K+F EL K+G+ + +AG P +LIRQRYR A ++++ GKM CL +ND
Sbjct: 214 KTFNLELACKKLGMMPIVTSAGELEDESAGGPGRLIRQRYRRAGEVVRVHGKMSCLIVND 273
Query: 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP-----RVPIIVTG 274
+DAG G T Q TVNNQ V TLMN+ D+P V L G +E+ R+PIIVTG
Sbjct: 274 IDAGLGWFKDTQQ-TVNNQTVCGTLMNLCDHPELVSL-GEERREDGSNLQTVRIPIIVTG 331
Query: 275 NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK-EDIVKLVDTFPGQSID 333
ND S LYAPL+RDGRMEK+YW P +D + + +F+ D + +D LV FP Q +D
Sbjct: 332 NDLSRLYAPLLRDGRMEKWYWDPQFDDIVNMVDALFKDDPLWSIDDTRALVAKFPNQPLD 391
Query: 334 FFGALRARVYDDEVRKWI 351
FFGA R+ VYDD +R W+
Sbjct: 392 FFGATRSTVYDDAIRNWM 409
>gi|145353113|ref|XP_001420873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581108|gb|ABO99166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 179/316 (56%), Gaps = 42/316 (13%)
Query: 78 DISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR-----QYSLDNTLDGL 132
D + ++ +G+VD +F + + + + D S LR N +
Sbjct: 30 DTGNTNTNVGARQGVVDDVFT--RNATGEFQLGADSDIASGELRYRYQEARKFKNLVGDY 87
Query: 133 YIAPAFMDKVVVHITKNFL---NLPNVK--------------VPLILGIWGGKGQGKSFQ 175
+ PAFM+KV H+ KNFL L +V+ PLILG+WGGKG GKSF
Sbjct: 88 HCPPAFMEKVSGHLVKNFLFGGGLRHVREMTNEAGVVVQPPNTPLILGVWGGKGCGKSFN 147
Query: 176 CELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAG 223
EL MG+ + NAG P +LIR+RY+ A +I+++ G M CL IND+DAG
Sbjct: 148 LELACKAMGVTPIITSAGELEDENAGAPGRLIRERYKRAGEILRRTGVMSCLIINDVDAG 207
Query: 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE----ENPRVPIIVTGNDFST 279
G TQ+TVNNQ V TLMN+ D+P V L ++ + RVPIIVTGND ST
Sbjct: 208 IGWFK-DTQHTVNNQTVCGTLMNLCDHPELVSLGEDRGEDGKNLQTARVPIIVTGNDLST 266
Query: 280 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTD-NVPKEDIVKLVDTFPGQSIDFFGAL 338
+YAPL+RDGRM+K+YW P+R+D + +F+ + + + +LV+ FPGQ +DFFGA
Sbjct: 267 VYAPLLRDGRMDKWYWNPSRDDICDIVHALFKDEVDWSPDATARLVNAFPGQPLDFFGAA 326
Query: 339 RARVYDDEVRKWISEV 354
RA+VYDD V +W+ EV
Sbjct: 327 RAKVYDDAVSRWMCEV 342
>gi|303281566|ref|XP_003060075.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458730|gb|EEH56027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 390
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 176/309 (56%), Gaps = 30/309 (9%)
Query: 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
SL N ++ F DK H+ KN L N++ PLILGIWGGKG GKSF EL M
Sbjct: 8 SLANVQGDYHVPERFRDKFATHLVKNALASSNLQTPLILGIWGGKGCGKSFNVELCCRDM 67
Query: 184 GI-----------NGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGGTT 231
G+ + AGEP L+R+RY A+ I+ GK DLDAG GR
Sbjct: 68 GVTPIVTSAGELEDPVAGEPGALLRRRYLAASTAIRHTGKPA-----DLDAGIGRH-RDD 121
Query: 232 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP---RVPIIVTGNDFSTLYAPLIRDG 288
+ TVNNQ+V ATLMN+ D+PT V + G + ++ RVPI+VTGND S +YAPL R G
Sbjct: 122 KTTVNNQIVAATLMNLCDDPTRVSVGGEWRADDRARCERVPIVVTGNDLSRVYAPLTRSG 181
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPK-----EDIVKLVDTFPGQSIDFFGALRARVY 343
RM+ + W PTR++ + + + D P ED + VD F Q +DFFGA R+R
Sbjct: 182 RMDLWMWEPTRDEIAEMVHQLLKDDKRPGGYGGIEDARRFVDAFDAQPLDFFGAARSRCV 241
Query: 344 DDEVRKWISEVGIERIGKRLVNS----KEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 399
DD+VR ++ VG+E +G RL++S K + ++L+ L+ GR + +EQ+NV
Sbjct: 242 DDDVRAFVDRVGVESLGTRLLSSGDKIKSKSVVVGRGDVSLEALVRAGRAIEREQQNVLD 301
Query: 400 VQLADKYLS 408
V+L+ +YL+
Sbjct: 302 VRLSREYLA 310
>gi|414585019|tpg|DAA35590.1| TPA: hypothetical protein ZEAMMB73_040721 [Zea mays]
Length = 203
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 141/200 (70%), Gaps = 5/200 (2%)
Query: 212 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPI 270
M CL INDLDAG GR G TQ TVNNQ+ TLMN+ADNPT V + + + + RVPI
Sbjct: 1 MSCLMINDLDAGVGRFG-NTQMTVNNQIAVGTLMNLADNPTRVSIGQKWRESDVTHRVPI 59
Query: 271 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 330
IVTGNDFSTLYAPLIRDGRMEKFYW P RED I + G++ D + E++ ++VD FP Q
Sbjct: 60 IVTGNDFSTLYAPLIRDGRMEKFYWQPNREDIISIVHGMYIKDGLSVEEVSRIVDAFPNQ 119
Query: 331 SIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PTFEQPKMTLDKLLEYG 387
++DF+GALR+R YD + +W+ E+ G E++ ++L+ K+G PTF PK TL+ L+E G
Sbjct: 120 ALDFYGALRSRTYDQAILEWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKPTLEALIESG 179
Query: 388 RMLVQEQENVKRVQLADKYL 407
LV+EQE + +L+ +Y+
Sbjct: 180 YSLVKEQELIMSSKLSKEYM 199
>gi|326493048|dbj|BAJ84985.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524450|dbj|BAK00608.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 206
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 141/202 (69%), Gaps = 5/202 (2%)
Query: 210 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRV 268
GKM CL INDLDAG GR G TQ TVNNQ+V TLMN+ADNP V + + + + R+
Sbjct: 1 GKMSCLMINDLDAGLGRFG-NTQMTVNNQIVVGTLMNLADNPNRVSVGQKWRESDITHRI 59
Query: 269 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFP 328
PII TGNDFSTLYAPLIRDGRMEKFYW PTRED I + ++ D + E++ +VDTFP
Sbjct: 60 PIIATGNDFSTLYAPLIRDGRMEKFYWQPTREDIINIIHRMYTKDGLSLEEVSSIVDTFP 119
Query: 329 GQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLE 385
Q++DF+GALR+R YD + +W++++ G E++G++L+ K E PTF PK TLD L++
Sbjct: 120 NQALDFYGALRSRTYDQAILQWVNDIGGYEQLGEKLLKRKNREKLPTFIPPKPTLDALIQ 179
Query: 386 YGRMLVQEQENVKRVQLADKYL 407
G LV+EQ V L+ +Y+
Sbjct: 180 SGNSLVEEQAFVMNSNLSKEYM 201
>gi|255088359|ref|XP_002506102.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
gi|226521373|gb|ACO67360.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
Length = 395
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 171/308 (55%), Gaps = 37/308 (12%)
Query: 133 YIAPAFMDKVVVHITKNFL-----NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-- 185
+I F+D+ HI KN L NL +V PLIL +WGGKG GKSF EL ++G+
Sbjct: 92 HIPDRFLDRFATHIAKNLLIDGGANLGSV--PLILCVWGGKGCGKSFNLELCCKRLGVFP 149
Query: 186 ---------NGNAGEPAKLIRQRYREAA-DIIKKGKMCCLFINDLDAGAGRMGGTTQYTV 235
+ AGEP ++R+RY A + G C+ +ND+DAG GR + TV
Sbjct: 150 VVVSAGELEDPTAGEPGAMLRRRYLTAGKHMSASGAPTCVIVNDVDAGVGRFK-DDKATV 208
Query: 236 NNQMVNATLMNIADNPTNVQLPGMYNQEEN---PRVPIIVTGNDFSTLYAPLIRDGRMEK 292
NNQ+ ATLMN+ D P V + G + ++ PRVPI+VT ND S LYAPL R+GR +
Sbjct: 209 NNQIAQATLMNLCDEPNRVSVGGEWRSDDRAHCPRVPIVVTANDPSVLYAPLTRNGRTDL 268
Query: 293 FYWAPTREDRIGVCSGIFRTDNVP----KEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
+ W PTR + + D P + D ++LV+ FP Q +DFFGA+R+R DD VR
Sbjct: 269 WMWEPTRGEITKMVHDAL--DGAPGYGGESDALELVNAFPSQPLDFFGAVRSRCADDAVR 326
Query: 349 KWISEVGIERIGKRLVNSK---EGPPTFEQPKMT-----LDKLLEYGRMLVQEQENVKRV 400
++I+ VG+E +G L + G P + +T L LLE G + +EQ+NV V
Sbjct: 327 RFIARVGLENLGATLCGHRGREGGDPGWSASTLTGMDASLRSLLEAGAEIAREQQNVMDV 386
Query: 401 QLADKYLS 408
L+ +Y++
Sbjct: 387 ALSREYVA 394
>gi|133711850|gb|ABO36654.1| RuBisCO activase [Cucumis sativus]
Length = 111
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/108 (83%), Positives = 98/108 (90%)
Query: 296 APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVG 355
APTREDRIG+C+GIFRTD VP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW VG
Sbjct: 1 APTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVG 60
Query: 356 IERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 403
+ERIG+ LVNSKE PPTF+QPKMT++KLLEYG MLV EQENVKRV+L
Sbjct: 61 VERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLV 108
>gi|345111061|pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase
C-Domain
Length = 107
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/102 (87%), Positives = 96/102 (94%)
Query: 298 TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE 357
TREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+SEVG++
Sbjct: 6 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVD 65
Query: 358 RIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 399
IGK+LVNSKEGPP+FEQPKMT+DKLL YG MLVQEQENVKR
Sbjct: 66 TIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKR 107
>gi|338746118|emb|CCC15108.1| rubisco activase [Lepidodinium chlorophorum]
Length = 252
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/162 (59%), Positives = 115/162 (70%), Gaps = 15/162 (9%)
Query: 71 RWAGLAYDISDDQQDITRGKGMVDTLFQAPME-SGTHYAVMSSYDYISQGLRQYSLDNTL 129
RW GL D+SDDQQDITRG+ MVD+LFQ GTH AVMSS + Q + + + +
Sbjct: 93 RWRGLDEDVSDDQQDITRGRHMVDSLFQGQQGLGGTHNAVMSSGPNVHQ--KNFGDSDVM 150
Query: 130 -DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-- 186
DGLYIAP F+DK+ VHI KNFL LP VKVPLILGIWGGKGQGK+FQ EL + K+GIN
Sbjct: 151 QDGLYIAPDFLDKMTVHIAKNFLELPLVKVPLILGIWGGKGQGKTFQTELGYRKLGINPI 210
Query: 187 ---------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 219
GNAGEPAKL+R +EA++ IKKGKMC LFIN+
Sbjct: 211 VMSAGELESGNAGEPAKLVRAGNKEASEFIKKGKMCFLFINE 252
>gi|115486825|ref|NP_001068556.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|62733170|gb|AAX95287.1| Similar to ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b) [Oryza
sativa Japonica Group]
gi|62733298|gb|AAX95415.1| ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b)-related
[Oryza sativa Japonica Group]
gi|77552727|gb|ABA95524.1| expressed protein [Oryza sativa Japonica Group]
gi|113645778|dbj|BAF28919.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|125578109|gb|EAZ19331.1| hypothetical protein OsJ_34881 [Oryza sativa Japonica Group]
Length = 366
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/225 (49%), Positives = 134/225 (59%), Gaps = 45/225 (20%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEY 61
+A STVGA + L +K + + ++ G S S+ ++I++ + E
Sbjct: 3 SAFSSTVGAPGSGLVVK-------NWLRTA---GYSHHGGRSRCRCRKIMAMAGGSSKEV 52
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR 121
DEEKQT QDRW GLAYDISDDQQDITRGKG+VD+LFQAPM GTH A +
Sbjct: 53 DEEKQTEQDRWKGLAYDISDDQQDITRGKGLVDSLFQAPMGDGTHEARVP---------- 102
Query: 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 181
Q N G + HI+KN + LPN+ QGKSFQC+LVFA
Sbjct: 103 QPGSQNVQPGQHHG---------HISKNLMKLPNI-------------QGKSFQCDLVFA 140
Query: 182 KMGIN---GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223
KMGIN +AGEPAKLIRQRYREAAD+I KGKMC LFINDLDAG
Sbjct: 141 KMGINLIMMSAGEPAKLIRQRYREAADMINKGKMCVLFINDLDAG 185
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 86/131 (65%), Gaps = 34/131 (25%)
Query: 332 IDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 391
IDFFGALRARVY DEVR+W++E+G+E IG+RL
Sbjct: 269 IDFFGALRARVYGDEVRRWVAEIGVENIGRRL---------------------------- 300
Query: 392 QEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDP 451
ENVKRV+LADKYLSEAALGDAN D+ G FYGKA QQ VPVP GCTD AANYDP
Sbjct: 301 ---ENVKRVRLADKYLSEAALGDANHDS---GEFYGKAEQQSPVPVPAGCTDQRAANYDP 354
Query: 452 TARSDDGSCNY 462
TARSDDGSC Y
Sbjct: 355 TARSDDGSCVY 365
>gi|302836245|ref|XP_002949683.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
gi|300265042|gb|EFJ49235.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
Length = 323
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 167/316 (52%), Gaps = 32/316 (10%)
Query: 120 LRQY---SLDNTLDGLYIAPAFMDKVVVHITKNFLN-----LPNVKVPLILGIWGGKGQG 171
LR Y + +N + Y+APAF++KV +H+ KN+L NV+VPLILGIWG KG G
Sbjct: 15 LRAYDFRTFNNIVGDYYVAPAFLEKVALHMAKNYLYDLGAIASNVRVPLILGIWGEKGMG 74
Query: 172 KSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIND 219
K+FQ EL ++G + AG P KLIR+RYR+A+++ K +GKM L I+D
Sbjct: 75 KTFQTELALKQLGAETVVMSSGELEHEWAGTPGKLIRERYRKASEMSKVRGKMTALLIHD 134
Query: 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFS 278
+DAG G Q TVNNQ+V TLMNI DNP V + + E+ R PIIVTG
Sbjct: 135 IDAGLGHF-DHVQVTVNNQIVIGTLMNICDNPNVVSVGQDWRSEDRIRRTPIIVTGR--- 190
Query: 279 TLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIV-KLVDTFPGQSIDFFGA 337
P R R + T+ S + N P V V F Q +DFFGA
Sbjct: 191 ---GPTRRFSRYLLRVTSVTQPHSTNHLSNCYLPTNTPCCTYVYTYVCRFKRQPLDFFGA 247
Query: 338 LRARVYDDEVRKWI-SEVGIERIGKRLV--NSKEGPPTFEQPKMTLDKLLEYGRMLVQEQ 394
LRA YD+++R+WI ++ G+ V K G P FE ++T+D L+ G L EQ
Sbjct: 248 LRASTYDEQIRQWIRRDITGGLWGEVCVGGTDKSGLPRFEPVRLTVDMLVAEGERLENEQ 307
Query: 395 ENVKRVQLADKYLSEA 410
+ V +L+ YL
Sbjct: 308 QQVLNHKLSADYLRHV 323
>gi|388515017|gb|AFK45570.1| unknown [Lotus japonicus]
Length = 184
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 124/178 (69%), Gaps = 4/178 (2%)
Query: 234 TVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
TVNNQ+V TLMN++DNPT V + + + + R+PIIVTGNDFST+YAPLIRDGRM+K
Sbjct: 2 TVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDK 61
Query: 293 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 352
FYW P RED + ++ D + ++++ ++VDTFP Q++DF+GALR+R YD + KW+
Sbjct: 62 FYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVD 121
Query: 353 EV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
++ G+E G +++ + + P F P+ T+D LLE G L++EQE V +L+ +Y+
Sbjct: 122 DIGGVENFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYM 179
>gi|134035003|sp|P85086.1|RCA_ARAHY RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 140
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 124/277 (44%), Positives = 127/277 (45%), Gaps = 148/277 (53%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
GLAYDISDDQQDITRG MVD+LFQAPM GTHYAVMSSY+YISQGLR
Sbjct: 1 GLAYDISDDQQDITRG--MVDSLFQAPMNDGTHYAVMSSYEYISQGLR------------ 46
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------- 186
VPLILGIWGG KMGIN
Sbjct: 47 ------------------------VPLILGIWGG--------------KMGINPIMMSAG 68
Query: 187 ----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 242
GNAGEPA KMCCLFINDLDAGAG
Sbjct: 69 ELESGNAGEPA-----------------KMCCLFINDLDAGAG----------------- 94
Query: 243 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 302
RVPIIVTGNDFSTLYAPLI R
Sbjct: 95 ------------------------RVPIIVTGNDFSTLYAPLI----------------R 114
Query: 303 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 339
IGVC+GIFR LVDTFPGQSIDFFGALR
Sbjct: 115 IGVCTGIFR-----------LVDTFPGQSIDFFGALR 140
>gi|111162643|gb|ABH07508.1| RuBisCO activase, partial [Nicotiana attenuata]
Length = 100
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/100 (79%), Positives = 90/100 (90%)
Query: 311 RTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGP 370
RTDNVP+E ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+S GIE IG +L+NS +GP
Sbjct: 1 RTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGP 60
Query: 371 PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 410
PTFEQPKMT++KLL YG MLVQEQENVKRVQLA+ YL EA
Sbjct: 61 PTFEQPKMTVEKLLGYGNMLVQEQENVKRVQLAETYLKEA 100
>gi|168415082|gb|ACA23474.1| rubisco activase [Arachis diogoi]
Length = 94
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 85/91 (93%)
Query: 337 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 396
ALRARVYDDEVRKWIS VG+E +GK+LVNSKEGPPTFEQPKMTL+KLLEYG MLVQEQEN
Sbjct: 1 ALRARVYDDEVRKWISGVGVEGVGKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQEN 60
Query: 397 VKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
VKRVQLADKYL+EAALGDAN DAI G+F+G
Sbjct: 61 VKRVQLADKYLNEAALGDANADAINRGAFFG 91
>gi|356494967|ref|XP_003516352.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 118
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 84/94 (89%)
Query: 334 FFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 393
FFGAL+ARVYDDEVRKWIS VG++ IGK+LVNSKEGPP F+QPKMTL KLLEYG MLVQE
Sbjct: 18 FFGALKARVYDDEVRKWISVVGVDFIGKKLVNSKEGPPNFDQPKMTLSKLLEYGNMLVQE 77
Query: 394 QENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
QENV+RVQLAD YL EAALGDAN D+I G+FYG
Sbjct: 78 QENVERVQLADMYLKEAALGDANQDSINRGTFYG 111
>gi|22255887|gb|AAM94806.1| rubisco activase alpha [Gossypium hirsutum]
Length = 76
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 69/76 (90%)
Query: 389 MLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAAN 448
MLV EQENVKRVQLADKYLSEAALG+AN+D+I G+FYGKAAQQV VPVPEGCTDP A N
Sbjct: 1 MLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFYGKAAQQVGVPVPEGCTDPNADN 60
Query: 449 YDPTARSDDGSCNYQF 464
+DPTARSDDG+C Y+F
Sbjct: 61 FDPTARSDDGTCTYKF 76
>gi|307104587|gb|EFN52840.1| hypothetical protein CHLNCDRAFT_26386, partial [Chlorella
variabilis]
Length = 239
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 100/170 (58%), Gaps = 5/170 (2%)
Query: 189 AGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 247
AGEP + +R+RY AA + G+ CL I+DLDAG G T TVN Q + +LM +
Sbjct: 18 AGEPGRRLRERYAFAARHTESTGEATCLVISDLDAGVGVFANTAN-TVNTQNLQGSLMAL 76
Query: 248 ADNPTNVQLPGMYN--QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 305
D+P V + + RVPI VT ND + LYAPL+R+GRM+KFY+ P+R +
Sbjct: 77 CDDPLLVSAGQEWAAVRRRALRVPIYVTANDLTCLYAPLVREGRMDKFYFEPSRGEMAAA 136
Query: 306 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVG 355
+F + D+ L+D FP Q +DFFG+++AR+ D VR+W+ + G
Sbjct: 137 LRALF-APQLGAADVKVLLDAFPEQPMDFFGSIKARLVDGAVRRWLHQAG 185
>gi|301323237|gb|ADK70390.1| rubisco activase [Musa AB Group]
Length = 68
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/67 (86%), Positives = 60/67 (89%)
Query: 396 NVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARS 455
NVKRVQLADKYLSEAALGDAN DAIK G FYGKAAQQV +PVPEGCTDP A N+DPTARS
Sbjct: 2 NVKRVQLADKYLSEAALGDANQDAIKTGQFYGKAAQQVNIPVPEGCTDPIATNFDPTARS 61
Query: 456 DDGSCNY 462
DDGSC Y
Sbjct: 62 DDGSCLY 68
>gi|308810312|ref|XP_003082465.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116060933|emb|CAL57411.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 555
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 74/119 (62%), Gaps = 5/119 (4%)
Query: 245 MNIADNPTNVQLPGMYNQEE----NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
MN+ D+P V + + RVPIIVT ND ST+YAPL+RDGRM+K+YW+PTR+
Sbjct: 1 MNLCDHPELVSVGEDRGDDGRNMVTARVPIIVTANDLSTVYAPLLRDGRMDKWYWSPTRD 60
Query: 301 DRIGVCSGIFR-TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 358
D + +F+ + E +LVD FPGQ +DFFGA RA+VYDD + W+ ER
Sbjct: 61 DICDIVHALFKDEEKWTYEATARLVDEFPGQPLDFFGAARAKVYDDAIHHWMCVDARER 119
>gi|187470377|gb|ACD11149.1| ribulose bisphosphate carboxylase activase [Lemna minor]
Length = 68
Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/68 (80%), Positives = 55/68 (80%), Gaps = 11/68 (16%)
Query: 170 QGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 218
QGKSFQCELVFAKMGIN GNAGEPAKLIRQRYREAADII KGKMC LFIN
Sbjct: 1 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCALFIN 60
Query: 219 DLDAGAGR 226
DLDAGAGR
Sbjct: 61 DLDAGAGR 68
>gi|18476502|gb|AAL50316.1| ultraviolet-B-repressible rubisco activase [Pisum sativum]
Length = 50
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/50 (90%), Positives = 48/50 (96%)
Query: 376 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 425
PKMTL+KLLEYG MLVQEQENVKRVQLADKYLSEAALGDAN+DAIK G+F
Sbjct: 1 PKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKRGTF 50
>gi|62176924|emb|CAG25592.1| putative rubisco activase [Triticum durum]
Length = 50
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 46/50 (92%)
Query: 378 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 427
MT++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 50
>gi|22255885|gb|AAM94805.1| rubisco activase beta [Gossypium hirsutum]
Length = 37
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/37 (89%), Positives = 35/37 (94%)
Query: 389 MLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 425
MLV EQENVKRVQLADKYLSEAALG+ANDDAIK G+F
Sbjct: 1 MLVAEQENVKRVQLADKYLSEAALGNANDDAIKRGAF 37
>gi|86611442|gb|ABD14394.1| chloroplast RuBisCO small isoform precursor [Oryza sativa Japonica
Group]
Length = 31
Score = 59.7 bits (143), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 435 VPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
+PVPEGCTDP A N+DPTARSDDGSC Y F
Sbjct: 2 LPVPEGCTDPVAKNFDPTARSDDGSCLYTF 31
>gi|356517889|ref|XP_003527618.1| PREDICTED: 26S protease regulatory subunit 10B homolog A-like
[Glycine max]
Length = 387
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSF-----QCEL------VFAKMGINGNAGEPAKLIRQRYREAA 204
+K+P + ++G G GK+ C + V + I+ + GE A+LIR+ ++ A
Sbjct: 167 MKLPKGVLLYGPPGTGKTLLAKAISCNVDAKFLKVVSSTIIHKSIGESARLIREMFKYA- 225
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
+ + C +F++++DA AGR + + ++ + TL + + QL G+ + E
Sbjct: 226 ---RNHQPCIIFMDEIDAIAGRRSSNRKGS--DREIQRTLKELLN-----QLDGLNHLE- 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV----CSGIFRTDNVPKE 318
+V II+ N L L+R GR+++ P R+ R+ + G+ + + E
Sbjct: 275 --KVKIIMATNRLDVLDPALLRHGRIDRKIEITLPNRKSRMEIFKIHAEGVTKRGEIDYE 332
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 333 AVVKLAEGFNGADL 346
>gi|68565625|sp|P84562.1|RCA_POPEU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 32
Score = 52.8 bits (125), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 31/60 (51%), Gaps = 28/60 (46%)
Query: 323 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDK 382
LVDTFPGQSIDFFGALR EGPPTFEQP MT++K
Sbjct: 1 LVDTFPGQSIDFFGALR----------------------------EGPPTFEQPAMTIEK 32
>gi|397671724|ref|YP_006513259.1| AAA ATPase [Propionibacterium propionicum F0230a]
gi|395141804|gb|AFN45911.1| ATPase, AAA family [Propionibacterium propionicum F0230a]
Length = 514
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 37/200 (18%)
Query: 166 GGKGQGKSFQCELVFAKMGINGNAGEPAKLI-------RQRYREAADIIKKGKMCCLFIN 218
G G GKS + + ++ G+ + A ++ R REA ++ C L+I+
Sbjct: 273 GVPGCGKSLSAKAIASQWGLPLYRLDMASVLGMYVGQSEGRLREALATAERVAPCVLWID 332
Query: 219 DLDAGA--GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276
+++ G G GGTT+ + + + QE +V ++ T ND
Sbjct: 333 EIEKGLAQGSDGGTTRRLIGQFL-------------------FWMQELTAKVFMVATAND 373
Query: 277 FSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSGIFRTDNVPKE---DIVKLVDTFP 328
STL L+R GR ++ ++ AP RE+ IG+ + +E D+V L D F
Sbjct: 374 VSTLPPELLRKGRFDELFFVDLPEAPDREEIIGLYFRKYLGAEPSQELLTDLVTLTDGFS 433
Query: 329 GQSID-FFGALRARVYDDEV 347
G ID + +VY D +
Sbjct: 434 GSDIDAVIHDIATKVYVDRM 453
>gi|225021604|ref|ZP_03710796.1| hypothetical protein CORMATOL_01626 [Corynebacterium matruchotii
ATCC 33806]
gi|305680771|ref|ZP_07403578.1| ATPase, AAA family [Corynebacterium matruchotii ATCC 14266]
gi|224945595|gb|EEG26804.1| hypothetical protein CORMATOL_01626 [Corynebacterium matruchotii
ATCC 33806]
gi|305658976|gb|EFM48476.1| ATPase, AAA family [Corynebacterium matruchotii ATCC 14266]
Length = 516
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 31/183 (16%)
Query: 166 GGKGQGKSF-------QCELVFAKMGINGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 218
G G GKS Q EL ++ + G Q REA + ++ C L+I+
Sbjct: 273 GVPGCGKSLSAKNIAVQWELPLYRLDMGAILGMYVGESEQNLREALETAERMAPCVLWID 332
Query: 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 278
+++ G G+ +V +++ L + QE +V I+ T ND S
Sbjct: 333 EIEKGLAT--GSGDSSVTKRLIGQFLF--------------WLQESQAKVFIVATANDVS 376
Query: 279 TLYAPLIRDGRMEKFYWA--PT---REDRIGVCSGIFRTDNVPKEDIVKLVDT---FPGQ 330
TL L+R GR ++ ++ PT R D I +C + +P + +L + F G
Sbjct: 377 TLPPELLRKGRFDEIFFVDLPTETERTDIIDLCFWKYTNHAIPSHLVAELAEVSEGFAGS 436
Query: 331 SID 333
ID
Sbjct: 437 DID 439
>gi|222641172|gb|EEE69304.1| hypothetical protein OsJ_28586 [Oryza sativa Japonica Group]
Length = 318
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 25/36 (69%)
Query: 429 AAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
A Q +PVPEGCTDP A N+DPTA S+D C Y F
Sbjct: 283 AQQAGNLPVPEGCTDPVANNFDPTAMSNDSICLYTF 318
>gi|89894709|ref|YP_518196.1| hypothetical protein DSY1963 [Desulfitobacterium hafniense Y51]
gi|89334157|dbj|BAE83752.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 491
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 189 AGEPAKLIRQRYREAADIIKKGK--MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
AG A +R+ +++A ++ KK K +FI+++D + G + +Q +N L
Sbjct: 137 AGVGADRVRRLFKKARELAKKEKKDRAIIFIDEMDILGAKRGSNVSHHEYDQTLNQLL-- 194
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304
V++ G+ N E+ P++ +I N L L+R GR ++ P +E R+
Sbjct: 195 -------VEMDGLGNSEQGPKILMIAATNRAEALDPALVRPGRFDRLVKVDLPDKEGRLA 247
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
+ T N P V L + ++ +F GA
Sbjct: 248 ILK--IHTKNKPLASCVDL-EQIAQETYNFSGA 277
>gi|423074649|ref|ZP_17063374.1| ATP-dependent metallopeptidase HflB [Desulfitobacterium hafniense
DP7]
gi|361854469|gb|EHL06535.1| ATP-dependent metallopeptidase HflB [Desulfitobacterium hafniense
DP7]
Length = 493
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 189 AGEPAKLIRQRYREAADIIKKGK--MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
AG A +R+ +++A ++ KK K +FI+++D + G + +Q +N L
Sbjct: 139 AGVGADRVRRLFKKARELAKKEKKDRAIIFIDEMDILGAKRGSNVSHHEYDQTLNQLL-- 196
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304
V++ G+ N E+ P++ +I N L L+R GR ++ P +E R+
Sbjct: 197 -------VEMDGLGNSEQGPKILMIAATNRAEALDPALVRPGRFDRLVKVDLPDKEGRLA 249
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
+ T N P V L + ++ +F GA
Sbjct: 250 ILK--IHTKNKPLASCVDL-EQIAQETYNFSGA 279
>gi|312068505|ref|XP_003137245.1| proteasome 26S subunit [Loa loa]
gi|307767590|gb|EFO26824.1| 26S protease regulatory subunit 10B [Loa loa]
Length = 397
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 40/218 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A++IR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + RV II+
Sbjct: 236 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKIIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ V S I + ++ E +VKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEVLKIHASKITKHGDIDYEAVVKLSDG 345
Query: 327 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 355
F G + F A R V D++ K + +VG
Sbjct: 346 FSGADLRNVCTEAGLFAIRAEREYVIDEDFMKAVRKVG 383
>gi|402590003|gb|EJW83934.1| hypothetical protein WUBG_05154 [Wuchereria bancrofti]
Length = 397
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 40/218 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A++IR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + RV II+
Sbjct: 236 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKIIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ V S I + ++ E +VKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEVLKIHASKITKHGDIDYEAVVKLSDG 345
Query: 327 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 355
F G + F A R V D++ K + +VG
Sbjct: 346 FSGADLRNVCTEAGLFAIRAEREYVIDEDFMKAVRKVG 383
>gi|170586148|ref|XP_001897842.1| Probable 26S protease regulatory subunit S10B [Brugia malayi]
gi|158594737|gb|EDP33319.1| Probable 26S protease regulatory subunit S10B, putative [Brugia
malayi]
Length = 467
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 40/218 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A++IR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + RV II+
Sbjct: 236 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKIIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ V S I + ++ E +VKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEVLKIHASKITKHGDIDYEAVVKLSDG 345
Query: 327 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 355
F G + F A R V D++ K + +VG
Sbjct: 346 FSGADLRNVCTEAGLFAIRAEREYVIDEDFMKAVRKVG 383
>gi|431794110|ref|YP_007221015.1| ATP-dependent Zn protease [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784336|gb|AGA69619.1| ATP-dependent Zn protease [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 493
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 189 AGEPAKLIRQRYREAADIIKKGK--MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
AG A+ +R+ +R+A D+ KK K +FI+++D + G + +Q +N L
Sbjct: 139 AGVGAERVRRLFRKARDLAKKEKKDRAIIFIDEMDILGAKRGSNVSHHEYDQTLNQLL-- 196
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304
V++ G+ ++E+ P++ I+ N L L+R GR ++ P RE R+
Sbjct: 197 -------VEMDGLGSEEQGPQILIVAATNRAEALDPALLRPGRFDRQVKVDLPDREGRLA 249
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
+ N P V L + ++ +F GA
Sbjct: 250 ILK--IHAKNKPLATDVDL-EQIAQETYNFSGA 279
>gi|355563435|gb|EHH19997.1| hypothetical protein EGK_02756, partial [Macaca mulatta]
Length = 319
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 23/175 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223
++G G GK+ LV + ++ GE A+LIR+ + A D + C +F++++DA
Sbjct: 117 LYGPPGTGKTL---LVVSSSIVDKYIGESARLIREMFNYARD----RQPCLIFMDEIDAI 169
Query: 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283
GR ++ T ++ + TLM + + Q+ G RV +I+ N TL
Sbjct: 170 GGRR--FSEGTSADREIRRTLMELLN-----QMDGFGTLH---RVKMIMATNRPDTLDPA 219
Query: 284 LIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 332
L+R GR+++ +P + R+ + I + + E IVKL D F G +
Sbjct: 220 LLRPGRLDRKTHIDSPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADL 274
>gi|225717030|gb|ACO14361.1| 26S protease regulatory subunit S10B [Esox lucius]
Length = 389
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V ++M N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQGTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ R D + + SG I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHVELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|297297860|ref|XP_001082028.2| PREDICTED: 26S protease regulatory subunit S10B-like [Macaca
mulatta]
Length = 409
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 192 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 247
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM++ + Q+ G RV +I+
Sbjct: 248 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN-----QMDGFDTLH---RVKMIM 297
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
T N TL L+R GR+++ R D + + +G I + + E IVKL D
Sbjct: 298 TTNRPDTLDLALLRPGRLDRKIHIDLPNEQARLDTLKIHAGPITKHGEIDYEAIVKLSDG 357
Query: 327 FPGQSI 332
F G +
Sbjct: 358 FNGADL 363
>gi|355745594|gb|EHH50219.1| hypothetical protein EGM_01010, partial [Macaca fascicularis]
Length = 392
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + +++ N GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAIASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 230
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM++ + Q+ G RV +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN-----QMDGFDTLH---RVKMIM 280
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
T N TL L+R GR+++ R D + + +G I + + E IVKL D
Sbjct: 281 TTNRPDTLDLALLRPGRLDRKIHIDLPNEQARLDTLKIHAGPITKHGEIDYEAIVKLSDG 340
Query: 327 FPGQSI 332
F G +
Sbjct: 341 FNGADL 346
>gi|145566934|sp|P85111.1|RCA_VITSX RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 62
Score = 48.1 bits (113), Expect = 0.009, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 31/61 (50%), Gaps = 28/61 (45%)
Query: 182 KMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 230
+MGIN GNAGEPAK MCCLFINDLDAGAGR+G
Sbjct: 15 RMGINPIMMSAGELESGNAGEPAK-----------------MCCLFINDLDAGAGRIGVC 57
Query: 231 T 231
T
Sbjct: 58 T 58
>gi|337283526|ref|YP_004623000.1| cell division control protein [Pyrococcus yayanosii CH1]
gi|334899460|gb|AEH23728.1| cell division control protein [Pyrococcus yayanosii CH1]
Length = 836
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 42/259 (16%)
Query: 164 IWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + + I G GE K IR+ +R+A ++
Sbjct: 584 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 639
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+FI+++DA A G V ++++N L M EEN V +I
Sbjct: 640 AIIFIDEIDAIAPARGAVEGERVTDRLINQLLTE------------MDGIEENSGVVVIA 687
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 326
N L L+R GR ++ P ++R + T N+P E++ K +
Sbjct: 688 ATNRPDILDPALLRPGRFDRLILVPAPDERARLEIFRVHTRNMPLAKDVNLEELAKKTEG 747
Query: 327 FPGQSIDFF---GALRA--RVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLD 381
+ G I AL A RV ++ + E E +GK +V K+ ++ K ++
Sbjct: 748 YTGADIAALVREAALNAMRRVLLTLPKRLVEEENEEFLGKLVVTRKDFEEALKRVKPSVT 807
Query: 382 K-LLEYGRMLVQEQENVKR 399
K ++EY R Q +E+ KR
Sbjct: 808 KYMMEYYR---QFEESRKR 823
>gi|432945585|ref|XP_004083671.1| PREDICTED: 26S protease regulatory subunit 10B-like [Oryzias
latipes]
Length = 377
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 160 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 215
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 216 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 265
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 266 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDYEAIVKLSDG 325
Query: 327 FPGQSI 332
F G +
Sbjct: 326 FNGADL 331
>gi|58259998|ref|XP_567409.1| ATPase [Cryptococcus neoformans var. neoformans JEC21]
gi|134116132|ref|XP_773237.1| hypothetical protein CNBJ0160 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255859|gb|EAL18590.1| hypothetical protein CNBJ0160 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229459|gb|AAW45892.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 405
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V A + N GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLIREMFAYA----REHEP 243
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR +Q T ++ + TLM + + Q+ G E R II+
Sbjct: 244 CVIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QMDGF---ESLGRTKIIM 293
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + ++ ++ E IVKL D
Sbjct: 294 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKKVNKSGDIDYEAIVKLSDG 353
Query: 327 FPGQSI 332
F G +
Sbjct: 354 FNGADL 359
>gi|225715516|gb|ACO13604.1| 26S protease regulatory subunit S10B [Esox lucius]
Length = 389
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVTSQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ V TLM + + Q+ G E RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREVQRTLMELLN-----QMDGF---ETLHRVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ R D + + SG I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARMDILKIHSGPITKHGEMDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|229367834|gb|ACQ58897.1| 26S protease regulatory subunit S10B [Anoplopoma fimbria]
Length = 389
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHASPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|410928215|ref|XP_003977496.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 1
[Takifugu rubripes]
Length = 389
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|339627940|ref|YP_004719583.1| Vesicle-fusing ATPase [Sulfobacillus acidophilus TPY]
gi|379007573|ref|YP_005257024.1| Microtubule-severing ATPase [Sulfobacillus acidophilus DSM 10332]
gi|339285729|gb|AEJ39840.1| Vesicle-fusing ATPase [Sulfobacillus acidophilus TPY]
gi|361053835|gb|AEW05352.1| Microtubule-severing ATPase [Sulfobacillus acidophilus DSM 10332]
Length = 488
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 189 AGEPAKLIRQRYREAADIIKKG--KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
AG A+ +RQ +R+A + K+ + +FI++++ AGR G + +Q +N L
Sbjct: 139 AGVGAQRVRQLFRDARSLAKREGRQSAIIFIDEIEVMAGRRGQHQSHLEYDQTLNQLL-- 196
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304
V++ GM E+ R+ +I N L L+R GR ++ P RE R
Sbjct: 197 -------VEMDGMATH-EDVRILVIAATNRADLLDPALMRPGRFDRLVRVDLPDREGREA 248
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
+ + T N P D V L ++ F GA
Sbjct: 249 ILA--LHTQNKPMADDVDLA-VLARETYGFSGA 278
>gi|198285437|gb|ACH85257.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Salmo
salar]
Length = 387
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V ++M N GE A+LIR+ + A D +
Sbjct: 170 LYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 225
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 226 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 275
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + SG I + + E IVKL D
Sbjct: 276 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDG 335
Query: 327 FPGQSI 332
F G +
Sbjct: 336 FNGADL 341
>gi|213512535|ref|NP_001134354.1| 26S protease regulatory subunit S10B [Salmo salar]
gi|209732644|gb|ACI67191.1| 26S protease regulatory subunit S10B [Salmo salar]
Length = 389
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V ++M N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + SG I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|428221330|ref|YP_007105500.1| AAA ATPase [Synechococcus sp. PCC 7502]
gi|427994670|gb|AFY73365.1| AAA+ family ATPase [Synechococcus sp. PCC 7502]
Length = 515
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 40/200 (20%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMG------------INGNAGEPAKLIRQRY 200
LP+ K L++GI +G GKS C A + G+ RQ
Sbjct: 265 LPHPKGVLLMGI---QGTGKSL-CAKAIAHLWNLPLLRLDVGKLFGSLLGQSESRTRQTI 320
Query: 201 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260
++A I C L+I+++D G + G + + +Q V ATL+ +
Sbjct: 321 QQAEAI----SPCILWIDEIDKAFGGISGISMDSGTSQRVFATLLT-------------W 363
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNV 315
QE+ V I+ T N+ L L+R GR ++ ++ P E+R + V FR D+V
Sbjct: 364 MQEKTSSVFIVATANNIHVLPPELLRKGRFDEIFFINLPNYEERKQILKVHLQRFRPDSV 423
Query: 316 P--KEDIVKLVDTFPGQSID 333
+ I ++ + F G I+
Sbjct: 424 AFDLDAIAQITEDFSGAEIE 443
>gi|324506772|gb|ADY42884.1| 26S protease regulatory subunit 10B [Ascaris suum]
Length = 449
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 40/218 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A++IR+ + A D +
Sbjct: 232 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 287
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 288 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGKVKIIM 337
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ V S I + + E IVKL D
Sbjct: 338 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQSRLEVLKIHASKITKHGEIDYEAIVKLSDG 397
Query: 327 FPGQSID---------FFGALRARVYDDEVRKWISEVG 355
F G + A R V D++ K + +VG
Sbjct: 398 FSGADLRNVCTEAGLYAIRAEREYVIDEDFMKAVRKVG 435
>gi|308322419|gb|ADO28347.1| 26S protease regulatory subunit s10b [Ictalurus furcatus]
Length = 389
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ V TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREVQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + SG I + ++ E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|348537164|ref|XP_003456065.1| PREDICTED: 26S protease regulatory subunit 10B [Oreochromis
niloticus]
Length = 389
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDFEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|50553670|ref|XP_504246.1| YALI0E21868p [Yarrowia lipolytica]
gi|49650115|emb|CAG79841.1| YALI0E21868p [Yarrowia lipolytica CLIB122]
Length = 410
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 185 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFGYA- 243
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T +++ + TLM + + G
Sbjct: 244 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSSDREIQRTLMELLNQMDGFDYLG------ 292
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ +I+ N TL L+R GR+++ P + R+ V +G+ + + E
Sbjct: 293 --KTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNEAGRLEVFKIHAAGVQKQGEIDYE 350
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D F G I
Sbjct: 351 ALVKMSDGFNGADI 364
>gi|47205942|emb|CAF93631.1| unnamed protein product [Tetraodon nigroviridis]
Length = 389
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDFEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|452846664|gb|EME48596.1| hypothetical protein DOTSEDRAFT_49041 [Dothistroma septosporum
NZE10]
Length = 710
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 38/242 (15%)
Query: 139 MDKVVVHITKNFLNLPNVKVPLILGIW--GGKGQGKSFQCELVFAKMGI----------- 185
M++++V + + +PL G+ G G GK+ A++G+
Sbjct: 156 MNRLIVMPIGCYEDYHAASLPLPKGVLLHGPPGCGKTMLARAYAAELGVPFVEILGPSIV 215
Query: 186 NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 245
+G +GE K +R R+ EA KK C LFI+++DA A + T+Q + ++V L+
Sbjct: 216 SGMSGESEKGVRDRFEEA----KKNAPCLLFIDEIDAIAPKR-ETSQSQMEKRIVAQLLV 270
Query: 246 NIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRI 303
++ + N+E P V ++ N +L L R GR E P + R
Sbjct: 271 SMDE----------INKEGGPPVIVLAATNRPDSLDPALRRGGRFGTEININVPNEQVRQ 320
Query: 304 GVCSGIFRTDNVPKE-DIVKLV-DT--FPGQSIDFF----GALRARVYDDEVRKWISEVG 355
+ R+ + + D+VKL DT F G + GA + Y++ + +E+G
Sbjct: 321 SILETQTRSMTLAADVDLVKLAKDTAGFVGADLHDLVGKAGAHQMERYEEALEHQATEMG 380
Query: 356 IE 357
+E
Sbjct: 381 LE 382
>gi|401886263|gb|EJT50312.1| ATPase [Trichosporon asahii var. asahii CBS 2479]
Length = 403
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+L+R+ + A
Sbjct: 178 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLVREMFAYA- 236
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 237 ---REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 283
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
R +I+ N TL L+R GR+++ P + R+ + GI ++ ++ E
Sbjct: 284 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKGINKSGDIDYE 343
Query: 319 DIVKLVDTFPGQSI 332
+VKL D F G +
Sbjct: 344 AVVKLSDGFNGADL 357
>gi|406700181|gb|EKD03362.1| ATPase [Trichosporon asahii var. asahii CBS 8904]
Length = 399
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+L+R+ + A
Sbjct: 174 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLVREMFAYA- 232
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 233 ---REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 279
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
R +I+ N TL L+R GR+++ P + R+ + GI ++ ++ E
Sbjct: 280 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKGINKSGDIDYE 339
Query: 319 DIVKLVDTFPGQSI 332
+VKL D F G +
Sbjct: 340 AVVKLSDGFNGADL 353
>gi|51467888|ref|NP_001003832.1| 26S protease regulatory subunit S10B [Danio rerio]
gi|49619121|gb|AAT68145.1| 26S protease regulatory subunit S10B [Danio rerio]
gi|54035446|gb|AAH83283.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|94734053|emb|CAK10966.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|156230928|gb|AAI52261.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|161611577|gb|AAI55770.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|182890938|gb|AAI65828.1| Psmc6 protein [Danio rerio]
Length = 389
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + SG I + ++ E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|325000843|ref|ZP_08121955.1| ATPase [Pseudonocardia sp. P1]
Length = 420
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCEL--------VFAKMG---INGNAGEPAKLIRQRYREA 203
V+ P + ++G G GK+F VFA G ++ GE + +R+ +R A
Sbjct: 188 GVEAPRGVLLYGPPGGGKTFLLRALAGSGDLNVFAVKGAELLDKYVGESERAVRELFRRA 247
Query: 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
A + +F++++DA A R GG+T V +++V A L + D T +
Sbjct: 248 A----EAAPALIFLDEVDALAPRRGGSTDAGVADRVVAALLTEL-DGATPL--------- 293
Query: 264 ENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAP 297
R ++V + L P L+R GR+E+ + P
Sbjct: 294 ---REVVVVGATNRPELIDPALLRPGRLERLVFVP 325
>gi|91094943|ref|XP_967788.1| PREDICTED: similar to 26S protease regulatory subunit S10b
[Tribolium castaneum]
gi|270016772|gb|EFA13218.1| hypothetical protein TcasGA2_TC010321 [Tribolium castaneum]
Length = 392
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAKD----HQP 230
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R + + + +G I + + E IVKL DT
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIDYEAIVKLSDT 340
Query: 327 FPGQSI 332
F G +
Sbjct: 341 FNGADL 346
>gi|357123904|ref|XP_003563647.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Brachypodium distachyon]
Length = 400
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREIFNYA- 229
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 230 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ V SGI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHASGIAKHGEIDYE 336
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|115468870|ref|NP_001058034.1| Os06g0607800 [Oryza sativa Japonica Group]
gi|51090352|dbj|BAD35613.1| putative 26S proteasome regulatory particle triple-A ATPase
subunit4 [Oryza sativa Japonica Group]
gi|51091388|dbj|BAD36121.1| putative 26S proteasome regulatory particle triple-A ATPase
subunit4 [Oryza sativa Japonica Group]
gi|113596074|dbj|BAF19948.1| Os06g0607800 [Oryza sativa Japonica Group]
gi|125597814|gb|EAZ37594.1| hypothetical protein OsJ_21925 [Oryza sativa Japonica Group]
gi|215693190|dbj|BAG88572.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215694896|dbj|BAG90087.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 401
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 32/202 (15%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLI 196
K FL + +K P + ++G G GK+ + + + I+ GE A+LI
Sbjct: 165 KLFLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLI 223
Query: 197 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
R+ + A ++ + C +F++++DA GR ++ T ++ + TLM + + QL
Sbjct: 224 REMFSYA----REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QL 272
Query: 257 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIF 310
G +E +V +I+ N L L+R GR+++ P + R+ V +GI
Sbjct: 273 DGF---DELGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIA 329
Query: 311 RTDNVPKEDIVKLVDTFPGQSI 332
+ + E +VKL + F G +
Sbjct: 330 KHGEIDYEAVVKLAEGFNGADL 351
>gi|302772841|ref|XP_002969838.1| hypothetical protein SELMODRAFT_171164 [Selaginella moellendorffii]
gi|302806886|ref|XP_002985174.1| hypothetical protein SELMODRAFT_157152 [Selaginella moellendorffii]
gi|300147002|gb|EFJ13668.1| hypothetical protein SELMODRAFT_157152 [Selaginella moellendorffii]
gi|300162349|gb|EFJ28962.1| hypothetical protein SELMODRAFT_171164 [Selaginella moellendorffii]
Length = 398
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFGYAR 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + RI V +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQGRIEVLKIHSAGILKHGEIDYE 334
Query: 319 DIVKLVDTFPGQSI 332
IVKL + F G +
Sbjct: 335 AIVKLAEGFNGADL 348
>gi|114052605|ref|NP_001040484.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori]
gi|95103080|gb|ABF51481.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori]
Length = 396
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 234
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 284
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + S I + + E +VKL DT
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDT 344
Query: 327 FPGQSI 332
F G +
Sbjct: 345 FNGADL 350
>gi|15239140|ref|NP_199115.1| regulatory particle triple-A ATPase 4A [Arabidopsis thaliana]
gi|75337115|sp|Q9SEI3.1|PS10A_ARATH RecName: Full=26S protease regulatory subunit 10B homolog A;
AltName: Full=26S proteasome AAA-ATPase subunit RPT4a;
AltName: Full=26S proteasome subunit 10B homolog A;
AltName: Full=Regulatory particle triple-A ATPase
subunit 4a
gi|6652884|gb|AAF22524.1|AF123393_1 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
gi|13937183|gb|AAK50085.1|AF372945_1 AT5g43010/MBD2_21 [Arabidopsis thaliana]
gi|9758590|dbj|BAB09203.1| 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
gi|18700262|gb|AAL77741.1| AT5g43010/MBD2_21 [Arabidopsis thaliana]
gi|332007517|gb|AED94900.1| regulatory particle triple-A ATPase 4A [Arabidopsis thaliana]
Length = 399
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P +R D + + +GI + + E
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 319 DIVKLVDTFPGQSI 332
IVKL + F G +
Sbjct: 336 AIVKLAEGFNGADL 349
>gi|17298147|dbj|BAB78495.1| 26S proteasome regulatory particle triple-A ATPase subunit4b [Oryza
sativa Japonica Group]
Length = 377
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 32/202 (15%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLI 196
K FL + +K P + ++G G GK+ + + + I+ GE A+LI
Sbjct: 141 KLFLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLI 199
Query: 197 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
R+ + A ++ + C +F++++DA GR ++ T ++ + TLM + + QL
Sbjct: 200 REMFSYA----REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QL 248
Query: 257 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIF 310
G +E +V +I+ N L L+R GR+++ P + R+ V +GI
Sbjct: 249 DGF---DELGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIA 305
Query: 311 RTDNVPKEDIVKLVDTFPGQSI 332
+ + E +VKL + F G +
Sbjct: 306 KHGEIDYEAVVKLAEGFNGADL 327
>gi|221486668|gb|EEE24929.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii GT1]
gi|221508425|gb|EEE34012.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii VEG]
Length = 398
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + M N GE A++IR+ + A
Sbjct: 174 IKTPKGVLLYGPPGTGKTLLARAMASNMNCNFMKVVASAIVDKYIGESARVIREMFAYAR 233
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR +Q T ++ + TLM + + QL G +E
Sbjct: 234 D----HEPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 279
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
V II+ N L L+R GR+++ P R D + + S I + ++ E
Sbjct: 280 LGAVKIIMATNRPDVLDPALMRPGRLDRKIEIPLPNETARVDILKIHSSKIAKQGDIDYE 339
Query: 319 DIVKLVDTFPGQSI 332
I KL D F G +
Sbjct: 340 AICKLCDGFNGADL 353
>gi|321263320|ref|XP_003196378.1| 6S protease subunit rpt4 [Cryptococcus gattii WM276]
gi|317462854|gb|ADV24591.1| 6S protease subunit rpt4, putative [Cryptococcus gattii WM276]
Length = 405
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V A + N GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLIREMFAYA----REHEP 243
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR +Q T ++ + TLM + + Q+ G + R II+
Sbjct: 244 CVIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QMDGF---DSLGRTKIIM 293
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + ++ ++ E IVKL D
Sbjct: 294 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKKVNKSGDIDYEAIVKLSDG 353
Query: 327 FPGQSI 332
F G +
Sbjct: 354 FNGADL 359
>gi|195160265|ref|XP_002020996.1| GL25072 [Drosophila persimilis]
gi|198464587|ref|XP_001353280.2| GA20215 [Drosophila pseudoobscura pseudoobscura]
gi|194118109|gb|EDW40152.1| GL25072 [Drosophila persimilis]
gi|198149786|gb|EAL30783.2| GA20215 [Drosophila pseudoobscura pseudoobscura]
Length = 389
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + ++M N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLMARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFSYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ + ++ + TLM + + Q+ G + +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGSSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSGIFRTDNVPK-EDIVKLVDT 326
N TL L+R GR+++ P R D + + +G V E IVKL DT
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLSKQGVIDYEAIVKLSDT 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|440797367|gb|ELR18455.1| 26S proteasome AAAATPase subunit RPT4a, putative [Acanthamoeba
castellanii str. Neff]
Length = 391
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ E F K+ ++ GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAMAHNVEAKFMKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR +Q T ++ + TLM + + GM
Sbjct: 225 ---REHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNQMDGFDELGM----- 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCS-GIFRTDNVPKE 318
V II+ N L L+R GR+++ P R D I + S I + ++ E
Sbjct: 275 ---VKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNESARLDIIKIHSESITKHGDIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+VKL D F G +
Sbjct: 332 SVVKLSDGFNGADL 345
>gi|237834291|ref|XP_002366443.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii ME49]
gi|211964107|gb|EEA99302.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii ME49]
Length = 398
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + M N GE A++IR+ + A
Sbjct: 174 IKTPKGVLLYGPPGTGKTLLARAMASNMNCNFMKVVASAIVDKYIGESARVIREMFAYAR 233
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR +Q T ++ + TLM + + QL G +E
Sbjct: 234 D----HEPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 279
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
V II+ N L L+R GR+++ P R D + + S I + ++ E
Sbjct: 280 LGAVKIIMATNRPDVLDPALMRPGRLDRKIEIPLPNETARVDILKIHSSKIAKQGDIDYE 339
Query: 319 DIVKLVDTFPGQSI 332
I KL D F G +
Sbjct: 340 AICKLCDGFNGADL 353
>gi|405122542|gb|AFR97308.1| ATPase [Cryptococcus neoformans var. grubii H99]
Length = 405
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V A + N GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLIREMFAYA----REHEP 243
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR +Q T ++ + TLM + + Q+ G + R II+
Sbjct: 244 CVIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QMDGF---DSLGRTKIIM 293
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + ++ ++ E IVKL D
Sbjct: 294 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKKVNKSGDIDYEAIVKLSDG 353
Query: 327 FPGQSI 332
F G +
Sbjct: 354 FNGADL 359
>gi|401409344|ref|XP_003884120.1| hypothetical protein NCLIV_045220 [Neospora caninum Liverpool]
gi|325118538|emb|CBZ54089.1| hypothetical protein NCLIV_045220 [Neospora caninum Liverpool]
Length = 398
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + M N GE A++IR+ + A
Sbjct: 174 IKTPKGVLLYGPPGTGKTLLARAMASNMNCNFMKVVASAIVDKYIGESARVIREMFAYAR 233
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR +Q T ++ + TLM + + QL G +E
Sbjct: 234 D----HEPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 279
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
V II+ N L L+R GR+++ P R D + + S I + ++ E
Sbjct: 280 LGAVKIIMATNRPDVLDPALMRPGRLDRKIEIPLPNETARVDILKIHSSKIAKQGDIDYE 339
Query: 319 DIVKLVDTFPGQSI 332
I KL D F G +
Sbjct: 340 AICKLCDGFNGADL 353
>gi|168003543|ref|XP_001754472.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
gi|162694574|gb|EDQ80922.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
Length = 392
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFSYAR 222
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P +R + + + SGI + + E
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHASGITKHGEIDYE 328
Query: 319 DIVKLVDTFPGQSI 332
IVKL + F G +
Sbjct: 329 AIVKLAEGFNGADL 342
>gi|148225468|ref|NP_001090469.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
laevis]
gi|67677964|gb|AAH97594.1| MGC114813 protein [Xenopus laevis]
Length = 389
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|225216858|gb|ACN85156.1| 26S protease regulatory subunit S10B [Oryza nivara]
Length = 401
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 172 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYA- 230
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 277
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 278 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 337
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 338 AVVKLAEGFNGADL 351
>gi|168017225|ref|XP_001761148.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
gi|162687488|gb|EDQ73870.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
Length = 392
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFSYAR 222
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P +R + + + SGI + + E
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHASGITKHGEIDYE 328
Query: 319 DIVKLVDTFPGQSI 332
IVKL + F G +
Sbjct: 329 AIVKLAEGFNGADL 342
>gi|49258183|gb|AAH73644.1| Psmc6 protein, partial [Xenopus laevis]
Length = 392
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 230
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 280
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 340
Query: 327 FPGQSI 332
F G +
Sbjct: 341 FNGADL 346
>gi|168029577|ref|XP_001767302.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
gi|162681557|gb|EDQ67983.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
Length = 392
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFSYAR 222
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P +R + + + SGI + + E
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHASGITKHGEIDYE 328
Query: 319 DIVKLVDTFPGQSI 332
IVKL + F G +
Sbjct: 329 AIVKLAEGFNGADL 342
>gi|45361531|ref|NP_989342.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
gi|39850228|gb|AAH64227.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
gi|89266829|emb|CAJ83423.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
Length = 389
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|256810701|ref|YP_003128070.1| AAA ATPase [Methanocaldococcus fervens AG86]
gi|256793901|gb|ACV24570.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
AG86]
Length = 903
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 37/232 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAA 204
V+ P + ++G G GK+ + V + G N + GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ C +F +++DA A + G V +++VN L +L GM EE
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM---EE 586
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV------CSGIFRTDNVPKE 318
V +I N + L+R GR+++ P +++ + G+ ++V E
Sbjct: 587 PKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRGMNLAEDVDLE 646
Query: 319 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEG 369
++ K + + G I+ A + VRK I + GIE + L+N +G
Sbjct: 647 ELAKKTEGYTGADIEALCREAAMLA---VRKSIGKPWGIETALRDLINYLQG 695
>gi|242064412|ref|XP_002453495.1| hypothetical protein SORBIDRAFT_04g006830 [Sorghum bicolor]
gi|241933326|gb|EES06471.1| hypothetical protein SORBIDRAFT_04g006830 [Sorghum bicolor]
Length = 400
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 336
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|28278099|gb|AAH45087.1| Psmc6 protein, partial [Xenopus laevis]
Length = 403
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 327 FPGQSI 332
F G +
Sbjct: 352 FNGADL 357
>gi|256073723|ref|XP_002573178.1| 26S protease regulatory subunit S10b [Schistosoma mansoni]
gi|360045512|emb|CCD83060.1| putative 26s protease regulatory subunit S10b [Schistosoma mansoni]
Length = 395
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ +N GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFNYARD----HQP 233
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR T+ T ++ + TLM + + G +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 283
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + + I + + E +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 327 FPGQSI 332
F G +
Sbjct: 344 FNGADL 349
>gi|293333701|ref|NP_001169629.1| uncharacterized protein LOC100383510 [Zea mays]
gi|224030533|gb|ACN34342.1| unknown [Zea mays]
gi|413926226|gb|AFW66158.1| hypothetical protein ZEAMMB73_031713 [Zea mays]
Length = 400
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 336
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|226469390|emb|CAX70174.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
Length = 395
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ +N GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFSYARD----HQP 233
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR T+ T ++ + TLM + + G +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 283
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + + I + + E +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 327 FPGQSI 332
F G +
Sbjct: 344 FNGADL 349
>gi|374611413|ref|ZP_09684199.1| AAA ATPase central domain protein [Mycobacterium tusciae JS617]
gi|373549123|gb|EHP75796.1| AAA ATPase central domain protein [Mycobacterium tusciae JS617]
Length = 522
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 30/198 (15%)
Query: 151 LNLPNVKVPLILGIWGGKGQGKSF-------QCELVFAKMGINGNAGEPAKLIRQRYREA 203
L+ +++ P + + G G GKS + EL ++ + G G R REA
Sbjct: 259 LSHSDLRPPRGVLLVGVPGCGKSLSAKAIASEWELPLYRLDMAGVLGMYVGQSEGRLREA 318
Query: 204 ADIIKKGKMCCLFINDLD-AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 262
++ + C L+I++++ A AG G + +M+ L + Q
Sbjct: 319 LEMASRVAPCVLWIDEIEKALAGGGSGGDATGITRRMIGQFLY--------------WLQ 364
Query: 263 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF----RTDNVP 316
E +V I+ T ND ++L L+R GR ++ ++ P EDR + F +TD P
Sbjct: 365 ESRAKVFIVATANDVTSLPPELLRKGRFDELFFVDLPDTEDRAEIVRMYFDTYLKTDISP 424
Query: 317 K--EDIVKLVDTFPGQSI 332
E++V L D F G I
Sbjct: 425 YLLEELVALSDGFAGADI 442
>gi|226505536|ref|NP_001148485.1| 26S protease regulatory subunit S10B [Zea mays]
gi|194702936|gb|ACF85552.1| unknown [Zea mays]
gi|195619706|gb|ACG31683.1| 26S protease regulatory subunit S10B [Zea mays]
gi|413936158|gb|AFW70709.1| 26S protease regulatory subunit S10B [Zea mays]
Length = 400
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 336
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|77993704|gb|ABB13465.1| 26S proteasome subunit RPT4 [Schistosoma mansoni]
Length = 368
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ +N GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFNYARD----HQP 233
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR T+ T ++ + TLM + + G +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 283
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + + I + + E +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 327 FPGQSI 332
F G +
Sbjct: 344 FNGADL 349
>gi|384248894|gb|EIE22377.1| 26S proteasome regulatory subunit [Coccomyxa subellipsoidea C-169]
Length = 398
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLSQLDGFDVIG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P R + + + SGI + ++ E
Sbjct: 274 --KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARSEILKIHASGITKHGDIDYE 331
Query: 319 DIVKLVDTFPGQSI 332
IVKL + F G +
Sbjct: 332 AIVKLAENFNGADL 345
>gi|345795599|ref|XP_003434055.1| PREDICTED: 26S protease regulatory subunit 10B-like [Canis lupus
familiaris]
Length = 418
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 201 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 256
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 257 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 306
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 307 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 366
Query: 327 FPGQSI 332
F G +
Sbjct: 367 FNGADL 372
>gi|27754103|ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus]
gi|354497334|ref|XP_003510776.1| PREDICTED: 26S protease regulatory subunit 10B [Cricetulus griseus]
gi|51702772|sp|P62333.1|PRS10_HUMAN RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|55977306|sp|P62334.1|PRS10_MOUSE RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|59800155|sp|P62335.1|PRS10_SPETR RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Conserved ATPase domain protein 44; Short=CADp44;
AltName: Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|1045497|gb|AAB40354.1| conserved ATPase domain protein 44 [Spermophilus tridecemlineatus]
gi|2213932|gb|AAB61616.1| 26S proteasome regulatory subunit [Homo sapiens]
gi|12848757|dbj|BAB28078.1| unnamed protein product [Mus musculus]
gi|13529266|gb|AAH05390.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|30582525|gb|AAP35489.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|48145535|emb|CAG32990.1| PSMC6 [Homo sapiens]
gi|61361236|gb|AAX42017.1| proteasome 26S subunit 6 [synthetic construct]
gi|61361244|gb|AAX42018.1| proteasome 26S subunit 6 [synthetic construct]
gi|74185083|dbj|BAE39144.1| unnamed protein product [Mus musculus]
gi|74194908|dbj|BAE26034.1| unnamed protein product [Mus musculus]
gi|109733764|gb|AAI16753.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
musculus]
gi|111601154|gb|AAI19169.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
musculus]
gi|119586049|gb|EAW65645.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|123994057|gb|ABM84630.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
construct]
gi|148688745|gb|EDL20692.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6, isoform
CRA_b [Mus musculus]
gi|189053915|dbj|BAG36422.1| unnamed protein product [Homo sapiens]
gi|208967156|dbj|BAG73592.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
construct]
gi|296483635|tpg|DAA25750.1| TPA: 26S protease regulatory subunit S10B [Bos taurus]
gi|335775939|gb|AEH58739.1| 26S protease regulatory subunit S10B-like protein [Equus caballus]
Length = 389
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|332374594|gb|AEE62438.1| unknown [Dendroctonus ponderosae]
Length = 392
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAKD----HQP 230
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQLTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R + + + +G I + + E IVKL D+
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIDYEAIVKLSDS 340
Query: 327 FPGQSI 332
F G +
Sbjct: 341 FNGADL 346
>gi|56755741|gb|AAW26049.1| SJCHGC06030 protein [Schistosoma japonicum]
gi|226469386|emb|CAX70172.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
gi|226469388|emb|CAX70173.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
Length = 395
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ +N GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFSYARD----HQP 233
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR T+ T ++ + TLM + + G +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 283
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + + I + + E +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 327 FPGQSI 332
F G +
Sbjct: 344 FNGADL 349
>gi|114053003|ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus]
gi|119390895|sp|Q2KIW6.1|PRS10_BOVIN RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6
gi|86827363|gb|AAI12483.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Bos taurus]
Length = 389
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|410928219|ref|XP_003977498.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 3
[Takifugu rubripes]
Length = 337
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GE A+LIR+ + A D + C +F++++DA GR ++ T ++ + TLM + +
Sbjct: 157 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 210
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC- 306
Q+ G + RV +I+ N TL L+R GR+++ P + R+ +
Sbjct: 211 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILK 262
Query: 307 ---SGIFRTDNVPKEDIVKLVDTFPGQSI 332
S I + + E IVKL D F G +
Sbjct: 263 IHSSPITKHGEIDYEAIVKLSDGFNGADL 291
>gi|57529874|ref|NP_001006494.1| 26S protease regulatory subunit S10B [Gallus gallus]
gi|53130584|emb|CAG31621.1| hypothetical protein RCJMB04_8n6 [Gallus gallus]
Length = 389
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|213972598|ref|NP_001093979.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Rattus
norvegicus]
gi|149033503|gb|EDL88301.1| rCG61291 [Rattus norvegicus]
Length = 403
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 327 FPGQSI 332
F G +
Sbjct: 352 FNGADL 357
>gi|428217192|ref|YP_007101657.1| AAA ATPase [Pseudanabaena sp. PCC 7367]
gi|427988974|gb|AFY69229.1| AAA ATPase central domain protein [Pseudanabaena sp. PCC 7367]
Length = 503
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 25/159 (15%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCE-------LVFAKMGINGNAGEPAKLIRQRYREAAD 205
LPN K L++GI +G GKS + L ++ + G R R+
Sbjct: 260 LPNPKGVLLMGI---QGTGKSLCAKAIAHLWRLPLLRLDVGRLFGSLVGQSESRTRQTIQ 316
Query: 206 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265
+ + C L+++++D MGGT+ + +Q V TL+ + QE++
Sbjct: 317 LTEALAPCILWMDEIDKAFAGMGGTSTDSGTSQRVFGTLLT-------------WMQEKS 363
Query: 266 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 302
V ++ T N+ + L L+R GR ++ ++ P++ +R
Sbjct: 364 SPVFVVATANNINALPPELLRKGRFDEIFFINLPSQAER 402
>gi|195539395|ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens]
gi|73963837|ref|XP_535701.2| PREDICTED: 26S protease regulatory subunit 10B [Canis lupus
familiaris]
gi|114653051|ref|XP_001159476.1| PREDICTED: 26S protease regulatory subunit 10B isoform 2 [Pan
troglodytes]
gi|291403875|ref|XP_002718294.1| PREDICTED: proteasome 26S ATPase subunit 6 [Oryctolagus cuniculus]
gi|296215034|ref|XP_002753956.1| PREDICTED: 26S protease regulatory subunit 10B [Callithrix jacchus]
gi|297695107|ref|XP_002824794.1| PREDICTED: 26S protease regulatory subunit 10B [Pongo abelii]
gi|332237110|ref|XP_003267746.1| PREDICTED: 26S protease regulatory subunit 10B [Nomascus
leucogenys]
gi|344273723|ref|XP_003408668.1| PREDICTED: 26S protease regulatory subunit 10B-like [Loxodonta
africana]
gi|348572189|ref|XP_003471876.1| PREDICTED: 26S protease regulatory subunit 10B-like [Cavia
porcellus]
gi|397523475|ref|XP_003831757.1| PREDICTED: 26S protease regulatory subunit 10B [Pan paniscus]
gi|410962256|ref|XP_003987690.1| PREDICTED: 26S protease regulatory subunit 10B [Felis catus]
gi|426232518|ref|XP_004010269.1| PREDICTED: 26S protease regulatory subunit 10B [Ovis aries]
gi|426376918|ref|XP_004055227.1| PREDICTED: 26S protease regulatory subunit 10B-like [Gorilla
gorilla gorilla]
gi|351707287|gb|EHB10206.1| 26S protease regulatory subunit S10B [Heterocephalus glaber]
gi|380814880|gb|AFE79314.1| 26S protease regulatory subunit 10B [Macaca mulatta]
gi|410216102|gb|JAA05270.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Pan
troglodytes]
gi|410290648|gb|JAA23924.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Pan
troglodytes]
gi|417400316|gb|JAA47112.1| Putative 26s protease regulatory subunit s10b-like protein
[Desmodus rotundus]
gi|431895846|gb|ELK05264.1| 26S protease regulatory subunit S10B [Pteropus alecto]
Length = 403
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 327 FPGQSI 332
F G +
Sbjct: 352 FNGADL 357
>gi|115444877|ref|NP_001046218.1| Os02g0199900 [Oryza sativa Japonica Group]
gi|11094192|dbj|BAB17625.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa Japonica Group]
gi|46390379|dbj|BAD15843.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa Japonica Group]
gi|49388371|dbj|BAD25481.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa Japonica Group]
gi|113535749|dbj|BAF08132.1| Os02g0199900 [Oryza sativa Japonica Group]
gi|125581193|gb|EAZ22124.1| hypothetical protein OsJ_05786 [Oryza sativa Japonica Group]
Length = 400
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYE 336
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|344230035|gb|EGV61920.1| hypothetical protein CANTEDRAFT_107330 [Candida tenuis ATCC 10573]
Length = 835
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 35/198 (17%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELV-------FAKMG----INGNAGEPAKLIRQRYREAA 204
+ P + +WG G GK+ + V F + +N GE + IRQ ++ A
Sbjct: 564 ITAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFQRA- 622
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 623 ---RASVPCIIFFDELDALVPRRDASLSES-SSRVVNTLL---------TELDGL----- 664
Query: 265 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 320
N R I V G N + +IR GR++K + PT E+R+ + + +++ P ++
Sbjct: 665 NDRKGIFVIGATNRPDMIDPAMIRPGRLDKSLYIELPTEEERLDILKTLIKSNGTPIDES 724
Query: 321 VKLVDTFPGQSI-DFFGA 337
V L D Q +F GA
Sbjct: 725 VNLKDIVYNQKCRNFSGA 742
>gi|328354365|emb|CCA40762.1| 26S protease regulatory subunit S10B [Komagataella pastoris CBS
7435]
Length = 454
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 229 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 287
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 288 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 336
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 318
+ +I+ N TL L+R GR+++ P + + T NV K E
Sbjct: 337 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEVFKIHTANVKKHGEFDFE 394
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D F G I
Sbjct: 395 AVVKMSDGFNGADI 408
>gi|395838570|ref|XP_003792186.1| PREDICTED: 26S protease regulatory subunit 10B [Otolemur garnettii]
Length = 403
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 327 FPGQSI 332
F G +
Sbjct: 352 FNGADL 357
>gi|357139615|ref|XP_003571376.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Brachypodium distachyon]
Length = 400
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P +R + + + +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEVLKIHAAGIAKHGEIDYE 336
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|334310858|ref|XP_001365047.2| PREDICTED: 26S protease regulatory subunit 10B-like [Monodelphis
domestica]
Length = 403
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 327 FPGQSI 332
F G +
Sbjct: 352 FNGADL 357
>gi|220932030|ref|YP_002508938.1| Microtubule-severing ATPase [Halothermothrix orenii H 168]
gi|219993340|gb|ACL69943.1| Microtubule-severing ATPase [Halothermothrix orenii H 168]
Length = 490
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 189 AGEPAKLIRQRYREAADIIKK-GKMCCL-FINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
AG AK +RQ ++EA KK GK + FI+++D G+ G T + +Q +N L
Sbjct: 140 AGLGAKRVRQLFKEARQSAKKYGKSSAIVFIDEIDVVGGKRGQVTSHLEYDQTLNQLL-- 197
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304
V++ G+ +E ++ ++ T N L L+R GR ++ P +E R+
Sbjct: 198 -------VEMDGLSVDDE-VQILVMATTNRIDILDPALLRPGRFDRIVQVDLPAKEGRLS 249
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
+ T N P + V L + ++ F GA
Sbjct: 250 ILK--IHTSNKPLAEEVNL-EQIARETFGFSGA 279
>gi|392589988|gb|EIW79318.1| 26S proteasome regulatory complex ATPase RPT4 [Coniophora puteana
RWD-64-598 SS2]
Length = 394
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYAK 234
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 282
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP--TREDRIGV----CSGIFRTDNVPKE 318
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 283 --KTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAQPVNKAEGIDYE 340
Query: 319 DIVKLVDTFPGQSI 332
IVKL DTF G +
Sbjct: 341 AIVKLTDTFNGADL 354
>gi|254573410|ref|XP_002493814.1| One of six ATPases of the 19S regulatory particle of the 26S
proteasome [Komagataella pastoris GS115]
gi|238033613|emb|CAY71635.1| One of six ATPases of the 19S regulatory particle of the 26S
proteasome [Komagataella pastoris GS115]
Length = 416
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 191 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 249
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 250 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 298
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 318
+ +I+ N TL L+R GR+++ P + + T NV K E
Sbjct: 299 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEVFKIHTANVKKHGEFDFE 356
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D F G I
Sbjct: 357 AVVKMSDGFNGADI 370
>gi|30583901|gb|AAP36199.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 6
[synthetic construct]
gi|60653563|gb|AAX29475.1| proteasome 26S subunit 6 [synthetic construct]
Length = 390
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|149622137|ref|XP_001521658.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial
[Ornithorhynchus anatinus]
Length = 400
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 183 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 238
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 239 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 288
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 289 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 348
Query: 327 FPGQSI 332
F G +
Sbjct: 349 FNGADL 354
>gi|218190265|gb|EEC72692.1| hypothetical protein OsI_06267 [Oryza sativa Indica Group]
Length = 400
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYE 336
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|81294202|gb|AAI07951.1| Psmc6 protein [Rattus norvegicus]
Length = 381
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 164 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 219
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 220 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 269
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 270 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 329
Query: 327 FPGQSI 332
F G +
Sbjct: 330 FNGADL 335
>gi|335280279|ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa]
Length = 403
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 327 FPGQSI 332
F G +
Sbjct: 352 FNGADL 357
>gi|302687350|ref|XP_003033355.1| hypothetical protein SCHCODRAFT_76066 [Schizophyllum commune H4-8]
gi|300107049|gb|EFI98452.1| hypothetical protein SCHCODRAFT_76066 [Schizophyllum commune H4-8]
Length = 388
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+++R+ + A
Sbjct: 164 IKPPKGVLLYGPPGTGKTLLARAVAATLSTNFLKVVSSAIVDKYIGESARVVREMFGYA- 222
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 223 ---REHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 269
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
R +I+ N TL L+R GR+++ P + R+ + + + + +++ E
Sbjct: 270 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAAPVNKAEDIDYE 329
Query: 319 DIVKLVDTFPGQSI 332
IVKL D+F G +
Sbjct: 330 AIVKLSDSFNGADL 343
>gi|449278480|gb|EMC86302.1| 26S protease regulatory subunit S10B, partial [Columba livia]
Length = 361
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 144 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 199
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 200 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 249
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 250 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 309
Query: 327 FPGQSI 332
F G +
Sbjct: 310 FNGADL 315
>gi|34783985|gb|AAH57997.1| Psmc6 protein, partial [Mus musculus]
Length = 382
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 165 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 220
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 221 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 270
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 271 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 330
Query: 327 FPGQSI 332
F G +
Sbjct: 331 FNGADL 336
>gi|321461635|gb|EFX72665.1| hypothetical protein DAPPUDRAFT_308117 [Daphnia pulex]
Length = 389
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R + + + +G I + ++ E +VKL D+
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDS 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|390332227|ref|XP_001186944.2| PREDICTED: 26S protease regulatory subunit 10B-like isoform 1
[Strongylocentrotus purpuratus]
gi|390332229|ref|XP_003723449.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 2
[Strongylocentrotus purpuratus]
Length = 389
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGAPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HEP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 228 CVVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------KVKIIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + ++ E +VKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPITKHGDIDYEAVVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|451848921|gb|EMD62226.1| hypothetical protein COCSADRAFT_39001 [Cochliobolus sativus ND90Pr]
gi|451998748|gb|EMD91212.1| hypothetical protein COCHEDRAFT_1137748 [Cochliobolus
heterostrophus C5]
Length = 393
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 318
+ II+ N TL L+R GR+++ P R + + + SG TD + E
Sbjct: 276 --QTKIIMATNRPDTLDPALLRAGRLDRKLEIPLPNEVGRLEILKIHSGSVVTDGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D F G +
Sbjct: 334 SIVKMSDGFNGADL 347
>gi|355714057|gb|AES04878.1| proteasome 26S ATPase subunit 6 [Mustela putorius furo]
Length = 370
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 153 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 208
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 209 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 258
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 259 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 318
Query: 327 FPGQSI 332
F G +
Sbjct: 319 FNGADL 324
>gi|19263883|gb|AAH25134.1| Psmc6 protein, partial [Mus musculus]
Length = 293
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 76 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 131
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 132 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 181
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 182 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 241
Query: 327 FPGQSI 332
F G +
Sbjct: 242 FNGADL 247
>gi|2960216|emb|CAA11285.1| 26S proteasome regulatory ATPase subunit 10b (S10b) [Manduca sexta]
Length = 396
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 234
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 284
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + + E +VKL DT
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGEMDYEAVVKLSDT 344
Query: 327 FPGQSI 332
F G +
Sbjct: 345 FNGADL 350
>gi|389610171|dbj|BAM18697.1| 26S protease regulatory subunit rpt4 [Papilio xuthus]
Length = 396
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 234
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 284
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + + E +VKL DT
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGEMDYEAVVKLSDT 344
Query: 327 FPGQSI 332
F G +
Sbjct: 345 FNGADL 350
>gi|327286230|ref|XP_003227834.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial
[Anolis carolinensis]
Length = 382
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 165 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 220
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 221 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 270
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 271 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 330
Query: 327 FPGQSI 332
F G +
Sbjct: 331 FNGADL 336
>gi|218198520|gb|EEC80947.1| hypothetical protein OsI_23654 [Oryza sativa Indica Group]
Length = 409
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + + + I+ GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYA----REHQP 243
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + QL G +E +V +I+
Sbjct: 244 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DELGKVKMIM 293
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N L L+R GR+++ P + R+ V +GI + + E +VKL +
Sbjct: 294 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYEAVVKLAEG 353
Query: 327 FPGQSI 332
F G +
Sbjct: 354 FNGADL 359
>gi|331699452|ref|YP_004335691.1| Microtubule-severing ATPase [Pseudonocardia dioxanivorans CB1190]
gi|326954141|gb|AEA27838.1| Microtubule-severing ATPase [Pseudonocardia dioxanivorans CB1190]
Length = 802
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 38/230 (16%)
Query: 110 MSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGG 167
MSS + + G LD+ D + A + V+ + +F L V P + ++G
Sbjct: 525 MSSSETLHTG--GIGLDDVGDMTEVKQALTEAVLWPLQYPDSFARL-GVDAPRGVLLYGP 581
Query: 168 KGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREAADIIKKGKMCCLF 216
G GK+F + + + G GE + +R+ +R+A+D +F
Sbjct: 582 PGCGKTFLLRALAGTGQLNVLSVKGAELLDKYVGESERAVRELFRKASD----AAPALVF 637
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276
++++DA A R GG+T V +++V A L +L G E ++V +
Sbjct: 638 LDEVDALAPRRGGSTDSGVADRVVAALL---------TELDGAQPLREV----VVVGATN 684
Query: 277 FSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDIVKL 323
L P L+R GR+E+ + P E R + R N P D V L
Sbjct: 685 RPELIDPALLRPGRLERLVYVPPPDAEARAAILRAAGR--NTPLADDVDL 732
>gi|118393771|ref|XP_001029293.1| ATPase, AAA family protein [Tetrahymena thermophila]
gi|89283465|gb|EAR81630.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 702
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELV-------FAKMG----INGNAGEPAKLIRQRYREA 203
N+ P + ++G G GK+ + V F + +N GE K +RQ + A
Sbjct: 456 NIASPAGVLLYGPPGCGKTLLAKAVANASKANFISVKGPELLNKYVGESEKSVRQVFSRA 515
Query: 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K C +F ++LDA + GG + V ++VN+ L +L G E
Sbjct: 516 ----KASAPCIIFFDELDALVPKRGGDSTNQVTERVVNSLL---------AELDGF---E 559
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311
+V +I N + ++R GR++K + PT ++++ + + R
Sbjct: 560 GRKQVYVIAATNRPDIIDPAILRGGRLDKLLYVPLPTNDEKVSILEALIR 609
>gi|12852148|dbj|BAB29293.1| unnamed protein product [Mus musculus]
Length = 389
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + + ++ +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMF----NYVRDHQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNSPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|389739234|gb|EIM80428.1| 26S proteasome regulatory complex ATPase RPT4 [Stereum hirsutum
FP-91666 SS1]
Length = 399
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A M N GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATMQTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKE 318
R +I+ N TL L+R GR+++ P R + + + S + + ++ E
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHSNPVNKHGDIDYE 340
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 341 AIVKLTDAFNGADL 354
>gi|326921318|ref|XP_003206908.1| PREDICTED: 26S protease regulatory subunit 10B-like [Meleagris
gallopavo]
Length = 372
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 155 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 210
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 211 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 260
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 261 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 320
Query: 327 FPGQSI 332
F G +
Sbjct: 321 FNGADL 326
>gi|225713006|gb|ACO12349.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis]
gi|290561741|gb|ADD38268.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis]
Length = 392
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + + G +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------QVKMIM 280
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR-----IGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P D+ + + +G I + + E +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKVEIPLPNDQARLEILKIHAGPITKHGEIDYEAVVKLSDG 340
Query: 327 FPGQSI 332
F G +
Sbjct: 341 FNGADL 346
>gi|402876178|ref|XP_003901853.1| PREDICTED: 26S protease regulatory subunit 10B [Papio anubis]
Length = 378
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 161 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 216
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 217 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 266
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 267 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 326
Query: 327 FPGQSI 332
F G +
Sbjct: 327 FNGADL 332
>gi|393221022|gb|EJD06507.1| ribosome biogenesis ATPase RIX7 [Fomitiporia mediterranea MF3/22]
Length = 773
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 93/242 (38%), Gaps = 46/242 (19%)
Query: 100 PMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAP--AFMDKVVVHITKNFLNLP--- 154
P+ + SY +Q L+Q + +G P + D +H + L++
Sbjct: 423 PLTEAQLTPLFISYVDFTQALKQVQPSSKREGFTTVPDVTWADIGALHTIREELHMAIVQ 482
Query: 155 -----------NVKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEP 192
+ P + +WG G GK+ + V + G +N GE
Sbjct: 483 PIRRPELFKRVGISAPCGVLLWGPPGCGKTLLAKAVANESGANFISVKGPELLNKYVGES 542
Query: 193 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 252
+ +RQ + A + C +F ++LDA R + + + +MVN L
Sbjct: 543 ERAVRQVFARA----RASSPCVIFFDELDALVPRRDDSLSES-SARMVNTLL-------- 589
Query: 253 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 310
+L G+ +E V +I N L + R GR++K + PT ++R+ + +
Sbjct: 590 -TELDGL---DERRGVHVIGATNRPDMLDPAMCRPGRLDKLLYVDLPTADERVEITRTVS 645
Query: 311 RT 312
RT
Sbjct: 646 RT 647
>gi|255316594|ref|ZP_05358177.1| ATP-dependent metallopeptidase HflB [Clostridium difficile
QCD-76w55]
gi|384359090|ref|YP_006196945.1| putative cell division protease FtsH-like protein [Clostridium
difficile BI1]
Length = 577
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 30/156 (19%)
Query: 164 IWGGKGQGKSFQCELVFAKMG-----INGN------AGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + G ING+ G AK +R+ + EA KK
Sbjct: 181 LYGPPGTGKTLIAKAVAGEAGVPFFSINGSDFIELYVGLGAKRVRELFEEA----KKKAP 236
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
LFI+++D+ G+ G + + + Q +NA L ++ G E + I+
Sbjct: 237 AILFIDEIDSIGGKRGCSGENSEQRQTINALL---------AEIDGFDGSE---GIFILC 284
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP---TREDRIGV 305
N L LIR GR +K P T EDR+ +
Sbjct: 285 ATNRLEDLDGALIRPGRFDKHISIPLPETSEDRLNI 320
>gi|413954589|gb|AFW87238.1| hypothetical protein ZEAMMB73_492879 [Zea mays]
Length = 447
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 218 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 276
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 277 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 323
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 324 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQGRMEVLKIHAAGIAKHGEIDYE 383
Query: 319 DIVKLVDTFPG 329
+VKL + F G
Sbjct: 384 AVVKLAEGFNG 394
>gi|345567910|gb|EGX50812.1| hypothetical protein AOL_s00054g898 [Arthrobotrys oligospora ATCC
24927]
Length = 393
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 35/213 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ V +G+ + + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHAAGVAKAGEIDYE 333
Query: 319 DIVKLVDTFPGQSIDFF----GALRARVYDDEV 347
+VK+ D F G + G R Y DE+
Sbjct: 334 GLVKMSDGFNGADLRNVVTEAGMFAIRDYRDEI 366
>gi|302389778|ref|YP_003825599.1| Vesicle-fusing ATPase [Thermosediminibacter oceani DSM 16646]
gi|302200406|gb|ADL07976.1| Vesicle-fusing ATPase [Thermosediminibacter oceani DSM 16646]
Length = 495
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 189 AGEPAKLIRQRYREAADIIKKG--KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
AG A+ +RQ ++ A D+ +K K C +FI++++ AG G T + +Q +N L
Sbjct: 137 AGVGAQRVRQLFKTARDLARKNSKKHCVIFIDEIEVIAGVRGKNTSHMEYDQTLNQLL-- 194
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304
V++ G+ ++++ + +I N L ++R GR ++ P +E R
Sbjct: 195 -------VEMDGLSAKDDDVNILVIGATNRPDILDPAIMRPGRFDRIVKVDLPDKEGRYQ 247
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
+ T + P D V L + ++ F GA
Sbjct: 248 ILK--LHTKDKPLADDVNL-EQIARETFGFSGA 277
>gi|326519767|dbj|BAK00256.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 347
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 118 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 177
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 178 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 223
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P +R + + + +GI + + E
Sbjct: 224 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEVLKIHAAGIAKHGEIDYE 283
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 284 AVVKLAEGFNGADL 297
>gi|219669145|ref|YP_002459580.1| microtubule-severing ATPase [Desulfitobacterium hafniense DCB-2]
gi|219539405|gb|ACL21144.1| Microtubule-severing ATPase [Desulfitobacterium hafniense DCB-2]
Length = 493
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 189 AGEPAKLIRQRYREAADIIKKGK--MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
AG A+ +R+ +++A + KK K +FI+++D + G + +Q +N L
Sbjct: 139 AGVGAERVRKLFKKARESAKKEKKDRAIIFIDEMDILGAKRGSNVSHHEYDQTLNQLL-- 196
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304
V++ G+ N E+ ++ +I N L L+R GR ++ P +E R+
Sbjct: 197 -------VEMDGLGNSEQGTQILLIAATNRAEALDPALLRPGRFDRLVKVDLPDKEGRLA 249
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
+ T N P V L + ++ +F GA
Sbjct: 250 ILK--IHTKNKPLASCVDL-EQIAQETYNFSGA 279
>gi|332373814|gb|AEE62048.1| unknown [Dendroctonus ponderosae]
Length = 391
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 174 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAKD----HQP 229
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 230 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 279
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R + + + +G I + + E IVKL D
Sbjct: 280 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIDYEAIVKLSDN 339
Query: 327 FPGQSI 332
F G +
Sbjct: 340 FNGADL 345
>gi|224085722|ref|XP_002307679.1| predicted protein [Populus trichocarpa]
gi|222857128|gb|EEE94675.1| predicted protein [Populus trichocarpa]
Length = 402
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 173 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 232
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 233 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 278
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 279 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 338
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 339 AVVKLAEGFNGADL 352
>gi|15219503|ref|NP_175120.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|297846852|ref|XP_002891307.1| hypothetical protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp.
lyrata]
gi|75336159|sp|Q9MAK9.1|PS10B_ARATH RecName: Full=26S protease regulatory subunit S10B homolog B;
AltName: Full=26S proteasome AAA-ATPase subunit RPT4b;
AltName: Full=26S proteasome subunit S10B homolog B;
AltName: Full=Regulatory particle triple-A ATPase
subunit 4b
gi|7767657|gb|AAF69154.1|AC007915_6 F27F5.8 [Arabidopsis thaliana]
gi|17065266|gb|AAL32787.1| similar to 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis
thaliana]
gi|21387177|gb|AAM47992.1| 26S proteasome AAA-ATPase subunit RPT4a-like protein [Arabidopsis
thaliana]
gi|297337149|gb|EFH67566.1| hypothetical protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp.
lyrata]
gi|332193951|gb|AEE32072.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 399
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + SGI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYE 335
Query: 319 DIVKLVDTFPGQSI 332
IVKL + F G +
Sbjct: 336 AIVKLGEGFNGADL 349
>gi|327402033|ref|YP_004342871.1| PKD domain-containing protein [Fluviicola taffensis DSM 16823]
gi|327317541|gb|AEA42033.1| PKD domain containing protein [Fluviicola taffensis DSM 16823]
Length = 649
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 20/23 (86%)
Query: 440 GCTDPAAANYDPTARSDDGSCNY 462
GCTDP A NYDPTA ++DGSCNY
Sbjct: 534 GCTDPLAENYDPTAVANDGSCNY 556
>gi|224080385|ref|XP_002306121.1| predicted protein [Populus trichocarpa]
gi|222849085|gb|EEE86632.1| predicted protein [Populus trichocarpa]
Length = 399
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 335
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|449504593|ref|XP_002200452.2| PREDICTED: 26S protease regulatory subunit 10B [Taeniopygia
guttata]
Length = 391
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 174 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 229
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 230 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 279
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 280 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 339
Query: 327 FPGQSI 332
F G +
Sbjct: 340 FNGADL 345
>gi|378755356|gb|EHY65383.1| 26S protease regulatory subunit S10B [Nematocida sp. 1 ERTm2]
Length = 389
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
V P + ++G G GK+ V A + I GE +++IR+ + A
Sbjct: 164 VSAPKGVLLYGPPGTGKTLLARAVAATLDSNFLKVVSSAIIEKYIGESSRMIREMFTYA- 222
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA G+ +++ T +++ V TLM + + Q+ G EE
Sbjct: 223 ---KENQPCVIFLDEIDAIGGKR--SSESTSSDREVQRTLMELLN-----QMDGF---EE 269
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKE 318
RV +I+ N L L+R GR+++ PT + R+ + + + + ++
Sbjct: 270 LGRVKVIMATNRPDILDPALLRPGRLDRKIEIPLPTSQGRLEILKIHSAKMEKKGDIDYN 329
Query: 319 DIVKLVDTFPGQSI 332
IVK+ F G I
Sbjct: 330 TIVKMSHGFNGADI 343
>gi|403278020|ref|XP_003930633.1| PREDICTED: 26S protease regulatory subunit 10B [Saimiri boliviensis
boliviensis]
Length = 428
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 327 FPGQSI 332
F G +
Sbjct: 352 FNGADL 357
>gi|384488185|gb|EIE80365.1| 26S protease regulatory subunit 10B [Rhizopus delemar RA 99-880]
Length = 396
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
VK P + ++G G GK+ + V + + +N GE A+LIR+ + A
Sbjct: 171 VKPPKGVLLYGPPGTGKTLLAKAVASTLQVNFLKVVSSAIVDKYIGESARLIREMFGYA- 229
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 230 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 278
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKE 318
+ +I+ N TL L+R GR+++ P R + + + +G I + ++ E
Sbjct: 279 --QTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAGHIAKHGDIDYE 336
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 337 AIVKLSDGFNGADL 350
>gi|255538752|ref|XP_002510441.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
gi|223551142|gb|EEF52628.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
Length = 399
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 335
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|118486132|gb|ABK94909.1| unknown [Populus trichocarpa]
Length = 399
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 335
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|384501822|gb|EIE92313.1| 26S protease regulatory subunit 10B [Rhizopus delemar RA 99-880]
Length = 395
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
VK P + ++G G GK+ + V + + +N GE A+LIR+ + A
Sbjct: 170 VKPPKGVLLYGPPGTGKTLLAKAVASTLQVNFLKVVSSAIVDKYIGESARLIREMFGYA- 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 229 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 277
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKE 318
+ +I+ N TL L+R GR+++ P R + + + +G I + ++ E
Sbjct: 278 --QTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAGNIAKHGDIDYE 335
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 336 AIVKLSDGFNGADL 349
>gi|330790315|ref|XP_003283243.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum]
gi|325086924|gb|EGC40307.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum]
Length = 828
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Query: 164 IWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ +C+ F + +N GE + +RQ ++ AA
Sbjct: 555 MYGPPGCGKTLLAKAIANECQANFISVKGPELLNKYVGESERAVRQVFQRAA----ASSP 610
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F ++ DA A + GG ++VN L ++ G+ + E V II
Sbjct: 611 CVIFFDEFDALAPKRGGDGGNQATERVVNQLL---------TEMDGLEKRSE---VFIIA 658
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLV 324
N + + R GR++K + PT E+R+ + + T +P + +V LV
Sbjct: 659 ATNRPDIIDPAMCRPGRLDKMVYVPLPTPEERVEILKTL--TQKIPIDPLVDLV 710
>gi|170034396|ref|XP_001845060.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus]
gi|167875693|gb|EDS39076.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus]
Length = 393
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R + + + +G I + ++ E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDN 341
Query: 327 FPGQSI 332
F G +
Sbjct: 342 FNGADL 347
>gi|357467393|ref|XP_003603981.1| 26S proteasome regulatory ATPase subunit S10b [Medicago truncatula]
gi|355493029|gb|AES74232.1| 26S proteasome regulatory ATPase subunit S10b [Medicago truncatula]
Length = 402
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE ++LIR+ + A
Sbjct: 173 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESSRLIREMFGYAR 232
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 233 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 278
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V II+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 279 LGKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 338
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 339 AVVKLAEGFNGADL 352
>gi|224062085|ref|XP_002300747.1| predicted protein [Populus trichocarpa]
gi|118483383|gb|ABK93592.1| unknown [Populus trichocarpa]
gi|222842473|gb|EEE80020.1| predicted protein [Populus trichocarpa]
Length = 402
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 173 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 232
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 233 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 278
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 279 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 338
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 339 AVVKLAEGFNGADL 352
>gi|219116749|ref|XP_002179169.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409060|gb|EEC48992.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 421
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 35/193 (18%)
Query: 156 VKVPLILGIWGGKGQGKSFQCEL-----------VFAKMGINGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A ++ GE A++IR+ + A
Sbjct: 196 IKAPKGVLLYGPPGTGKTLLARALASNISATFLKVVASAIVDKYIGESARIIREMFGFAR 255
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 262
D + C +F++++DA +GG+ ++ T ++ + TLM + + Q+ G
Sbjct: 256 D----HEPCVIFMDEIDA----IGGSRFSEGTSADREIQRTLMELLN-----QMDGF--- 299
Query: 263 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVP 316
EE +V +++ N L L+R GR+++ P R+ + SGI + ++
Sbjct: 300 EEQGQVKMVMATNRPDILDPALLRPGRLDRKIEIPEPNESQRLEILKIHASGITKRGDID 359
Query: 317 KEDIVKLVDTFPG 329
E +VKL D G
Sbjct: 360 FESVVKLADGLNG 372
>gi|15920392|ref|NP_376061.1| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7]
Length = 689
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 30/216 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + G N A GE K IR+ +R+A ++
Sbjct: 424 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 479
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+F +++DA A G TT V ++VN L ++ G+ E V II
Sbjct: 480 TVIFFDEIDAIAPMRGLTTDSGVTERIVNQLL---------AEMDGIEKLEN---VVIIA 527
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP-KEDIVKLVDTFPGQS 331
N L L+R GR ++ + P + R T NVP EDI +D ++
Sbjct: 528 ATNRPDILDPALLRPGRFDRLIYVPPPDKRARAEILKVHTRNVPLAEDIT--LDELAEKT 585
Query: 332 IDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK 367
+ GA A + + + I E E + K N K
Sbjct: 586 EGYTGADLAALVREATLRAIREEMTECMKKADENCK 621
>gi|225718662|gb|ACO15177.1| 26S protease regulatory subunit S10B [Caligus clemensi]
Length = 392
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + + G +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------QVKMIM 280
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR-----IGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P D+ + + +G I + + E +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKVEIPLPNDQARLEILKIHAGPITKHGGIDYEAVVKLSDG 340
Query: 327 FPGQSI 332
F G +
Sbjct: 341 FNGADL 346
>gi|224105337|ref|XP_002313775.1| predicted protein [Populus trichocarpa]
gi|222850183|gb|EEE87730.1| predicted protein [Populus trichocarpa]
Length = 392
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 222
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 328
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 329 AVVKLAEGFNGADL 342
>gi|391332687|ref|XP_003740763.1| PREDICTED: 26S protease regulatory subunit 10B-like [Metaseiulus
occidentalis]
Length = 403
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V + M ++ GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASNMDSNFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 241
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 291
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + I + ++ E +VKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDILKIHARSITKHGDIDWEAVVKLSDG 351
Query: 327 FPGQSI 332
F G +
Sbjct: 352 FNGADL 357
>gi|392577846|gb|EIW70974.1| hypothetical protein TREMEDRAFT_37495 [Tremella mesenterica DSM
1558]
Length = 404
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+L+R+ + A
Sbjct: 179 IKPPKGVLLYGPPGTGKTLLARAVAATLDTNFLKVVSSAIVDKYIGESARLVREMFAYA- 237
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ + ++ + TLM + + Q+ G +
Sbjct: 238 ---KEHEPCIIFMDEIDAIGGRR--FSEGSSADREIQRTLMELLN-----QMDGF---DS 284
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+ +I+ N TL L+R GR+++ P + R+ + GI ++ ++ E
Sbjct: 285 LGKTKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKGINKSGDIDYE 344
Query: 319 DIVKLVDTFPGQSI 332
+VKL D F G +
Sbjct: 345 AVVKLSDGFNGADL 358
>gi|375083130|ref|ZP_09730162.1| CDC48/VCP like protein, AAA superfamily, partial [Thermococcus
litoralis DSM 5473]
gi|374742216|gb|EHR78622.1| CDC48/VCP like protein, AAA superfamily, partial [Thermococcus
litoralis DSM 5473]
Length = 535
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 34/187 (18%)
Query: 164 IWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + +GI G GE K IR+ +R+A ++
Sbjct: 282 LYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIREIFRKA----RQAAP 337
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+FI+++DA A R G T V ++++N L M EEN V +I
Sbjct: 338 TVVFIDEIDAIAPRRG-TDVNRVTDRLINQLLTE------------MDGIEENSGVVVIA 384
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 326
N L L+R GR ++ P +++ + T NVP E++ K +
Sbjct: 385 ATNRPDILDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLAEDVSLEELAKRTEG 444
Query: 327 FPGQSID 333
+ G I+
Sbjct: 445 YTGADIE 451
>gi|339234579|ref|XP_003378844.1| 26S protease regulatory subunit S10B [Trichinella spiralis]
gi|316978544|gb|EFV61519.1| 26S protease regulatory subunit S10B [Trichinella spiralis]
Length = 452
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ Q E F K+ ++ GE A++IR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLECNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 234
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------KVKIIM 284
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D I + + I + + E +VKL D
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIIKIHAKPITKKGIIDFESVVKLSDG 344
Query: 327 FPGQSI 332
F G +
Sbjct: 345 FSGADL 350
>gi|387592229|gb|EIJ87253.1| ATPase [Nematocida parisii ERTm3]
gi|387597428|gb|EIJ95048.1| ATPase [Nematocida parisii ERTm1]
Length = 389
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
V P + ++G G GK+ V A + I GE +++IR+ + A
Sbjct: 164 VSAPKGVLLYGPPGTGKTLLARAVAATLDSNFLKVVSSAIIEKYIGESSRMIREMFTYA- 222
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA G+ +++ T +++ V TLM + + Q+ G EE
Sbjct: 223 ---KENQPCVIFLDEIDAIGGKR--SSESTSSDREVQRTLMELLN-----QMDGF---EE 269
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
RV +I+ N L L+R GR+++ P
Sbjct: 270 LGRVKVIMATNRPDILDPALLRPGRLDRKIEIP 302
>gi|157106603|ref|XP_001649399.1| 26S protease regulatory subunit S10b [Aedes aegypti]
gi|94469214|gb|ABF18456.1| 26S proteasome regulatory complex ATPase RPT4 [Aedes aegypti]
gi|108879818|gb|EAT44043.1| AAEL004563-PA [Aedes aegypti]
Length = 393
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R + + + +G I + ++ E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDN 341
Query: 327 FPGQSI 332
F G +
Sbjct: 342 FNGADL 347
>gi|225458173|ref|XP_002281107.1| PREDICTED: 26S protease regulatory subunit S10B homolog B [Vitis
vinifera]
gi|147800891|emb|CAN75568.1| hypothetical protein VITISV_010255 [Vitis vinifera]
gi|302142551|emb|CBI19754.3| unnamed protein product [Vitis vinifera]
Length = 398
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|406605633|emb|CCH42949.1| 26S protease subunit [Wickerhamomyces ciferrii]
Length = 418
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 193 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 251
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 252 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 300
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 318
+ +I+ N TL L+R GR+++ P + + T+ + K E
Sbjct: 301 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNEAGRLEVFKIHTEKISKQGEFDFE 358
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D F G I
Sbjct: 359 AVVKMSDGFNGADI 372
>gi|401623488|gb|EJS41585.1| rpt4p [Saccharomyces arboricola H-6]
Length = 437
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
II+ N TL L+R GR+++ P + R+ + S + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTSKVKKTGEFDFE 377
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|342306104|dbj|BAK54193.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 773
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 30/202 (14%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + G N A GE K IR+ +R+A ++
Sbjct: 508 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 563
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+F +++DA A G TT V ++VN L ++ G+ E V II
Sbjct: 564 TVIFFDEIDAIAPMRGLTTDSGVTERIVNQLL---------AEMDGIEKLE---NVVIIA 611
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP-KEDIVKLVDTFPGQS 331
N L L+R GR ++ + P + R T NVP EDI +D ++
Sbjct: 612 ATNRPDILDPALLRPGRFDRLIYVPPPDKRARAEILKVHTRNVPLAEDIT--LDELAEKT 669
Query: 332 IDFFGALRARVYDDEVRKWISE 353
+ GA A + + + I E
Sbjct: 670 EGYTGADLAALVREATLRAIRE 691
>gi|324508906|gb|ADY43754.1| 26S protease regulatory subunit 4 [Ascaris suum]
Length = 422
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 164 IWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V I N+GE AKL+R+ +R A K+
Sbjct: 206 LYGEPGTGKTLLAKAVAHSTSATFIRATGADLIQKNSGEGAKLVRELFRLA----KESAP 261
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269
C +FI+++DA GT +Y ++ + V TL+ + + Q+ G E V
Sbjct: 262 CIVFIDEIDA-----VGTKRYDTSSGGEREVQRTLLELLN-----QMDGF---ESRGDVK 308
Query: 270 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV------CSGIFRTDNVPKEDIV 321
II+ N L LIR GR+++ P +++ + SG+ D V E I+
Sbjct: 309 IIMATNRIDVLDPALIRPGRIDRKIELPKPDEKTKLRIFQIHTSGMKIADEVKFEKII 366
>gi|213402523|ref|XP_002172034.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
yFS275]
gi|212000081|gb|EEB05741.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
yFS275]
Length = 389
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 31/187 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + +G+N GE A++IR+ + A
Sbjct: 164 IKPPKGVLLYGPPGTGKTLLARAVASTLGVNFLKVVSSAIVDKYIGESARIIREMFSYA- 222
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 223 ---KEHEPCVIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 271
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
R +I+ N TL L+R GR+++ P + R+ + S + + ++ E
Sbjct: 272 --RTKVIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLSKVAKQGDIDYE 329
Query: 319 DIVKLVD 325
IVKL D
Sbjct: 330 AIVKLTD 336
>gi|449515756|ref|XP_004164914.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
Length = 398
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|241955559|ref|XP_002420500.1| ATPase of the AAA family, putative; ribosome biogenesis ATPase,
putative; ribosome export protein, putative [Candida
dubliniensis CD36]
gi|223643842|emb|CAX41579.1| ATPase of the AAA family, putative [Candida dubliniensis CD36]
Length = 830
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 34/183 (18%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELV-------FAKMG----INGNAGEPAKLIRQRYREAA 204
+ P + +WG G GK+ + V F + +N GE K +RQ ++ A
Sbjct: 556 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 614
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 615 ---RASTPCIIFFDELDALVPRRD-TSMSESSSRVVNTLL---------TELDGL----- 656
Query: 265 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDI 320
N R + V G N + ++R GR++K + PT E+R+ + + RT+N P +
Sbjct: 657 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTNNSPLNEN 716
Query: 321 VKL 323
V L
Sbjct: 717 VDL 719
>gi|390951337|ref|YP_006415096.1| AAA ATPase [Thiocystis violascens DSM 198]
gi|390427906|gb|AFL74971.1| AAA+ family ATPase [Thiocystis violascens DSM 198]
Length = 496
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 36/156 (23%)
Query: 160 LILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIK 208
L+LG+ GG GKS + V + G+ + GE K +R R + AD++
Sbjct: 268 LLLGVQGG---GKSLAAKAVAGRFGVPLLRIDFGALYDKYIGETEKNLR-RALDTADLMA 323
Query: 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268
C L+I++++ G G+ V +++ L+ +A+ T RV
Sbjct: 324 P---CVLWIDEIEKGIA--SGSEDEGVGRRILGTLLIWMAERAT--------------RV 364
Query: 269 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 302
++ T ND S L LIR GR+++ ++ PT E R
Sbjct: 365 FLVATANDISRLPPELIRKGRIDELFFVDLPTAEVR 400
>gi|403417831|emb|CCM04531.1| predicted protein [Fibroporia radiculosa]
Length = 399
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYA- 233
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 234 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSGIFRTD-NVPKE 318
R +I+ N TL L+R GR+++ P R + + + +G D + E
Sbjct: 281 LGRTKLIMATNRPDTLDPALMRPGRLDRKIEIPLPNEQARLEILKIHAGPVNKDKEIDYE 340
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 341 SIVKLSDGFNGADL 354
>gi|357627263|gb|EHJ77001.1| 26S proteasome regulatory ATPase subunit 10B [Danaus plexippus]
Length = 373
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 156 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 211
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 212 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 261
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + S I + + E +VKL D
Sbjct: 262 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDA 321
Query: 327 FPGQSI 332
F G +
Sbjct: 322 FNGADL 327
>gi|358058571|dbj|GAA95534.1| hypothetical protein E5Q_02189 [Mixia osmundae IAM 14324]
Length = 432
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + MG+N GE ++L+R+ + A K+ +
Sbjct: 214 LYGPPGTGKTLLAKAVASTMGVNFLKVVSSAIVDKYIGESSRLVREMFAYA----KEHEP 269
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + R +I+
Sbjct: 270 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKVIM 319
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R + I + + ++ + + +VKL +
Sbjct: 320 ATNRPDTLDPALLRPGRLDRKIEIPLPNEIARTEIIKIHAQNVQKSGEIDYDPVVKLSEG 379
Query: 327 FPGQSI 332
F G +
Sbjct: 380 FNGADL 385
>gi|170086734|ref|XP_001874590.1| 26S proteasome regulatory complex, ATPase RPT4 [Laccaria bicolor
S238N-H82]
gi|164649790|gb|EDR14031.1| 26S proteasome regulatory complex, ATPase RPT4 [Laccaria bicolor
S238N-H82]
Length = 404
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A++IR+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVIREMFGYAR 234
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
R +I+ N TL L+R GR+++ P + R+ + + + ++ + E
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAAPVNKSGEIDYE 340
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 341 SIVKLSDGFNGADL 354
>gi|443475164|ref|ZP_21065122.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443020015|gb|ELS34024.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 549
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 31/196 (15%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCE-------LVFAKMGINGNAGEPAKLIRQRYREAAD 205
LPN + L+LGI +G GKS + L ++ + G R R+
Sbjct: 260 LPNPRGVLLLGI---QGTGKSLCAKAIANLWRLPLLRLDVGRLFGSLVGQSESRTRQTIQ 316
Query: 206 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265
+ + C L+I+++D G + + + +Q V TL+ + QE++
Sbjct: 317 LAEALAPCILWIDEIDKAFGGIANSVGDSGTSQRVLGTLLT-------------WMQEKS 363
Query: 266 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR---IGVCSGIFRTDNVPKEDI 320
V ++ T N+ L L+R GR ++ ++ PT E+R + FR +P DI
Sbjct: 364 SPVFVVATANNIHALPPELLRKGRFDELFFINLPTYEERKEIFLLHLKRFRPTELPSFDI 423
Query: 321 VKLV---DTFPGQSID 333
++ F G I+
Sbjct: 424 ERMAAISKEFSGAEIE 439
>gi|414078652|ref|YP_006997970.1| AAA ATPase [Anabaena sp. 90]
gi|413972068|gb|AFW96157.1| AAA ATPase [Anabaena sp. 90]
Length = 532
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 34/167 (20%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYR 201
LP+ K L+ GI +G GKS + + A+ + G GE IRQ +
Sbjct: 277 LPSPKGVLLAGI---QGTGKSLSAKTIAAEWKLPLLRLDVGRLFGGIVGESESRIRQVIK 333
Query: 202 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260
+++ C LFI++ D G + GT + ++ V +L+ +
Sbjct: 334 ----LVEAIAPCVLFIDEADKAFGNVNTGTDGDSGTSRRVFGSLIT-------------W 376
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV 305
QE+ V I++T N+ L A L+R GR+++ +W P +++R+ +
Sbjct: 377 MQEKVSPVFIVLTANNVEILPAELLRKGRLDEIFWLNLPNQKERLQI 423
>gi|255538750|ref|XP_002510440.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
gi|223551141|gb|EEF52627.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
Length = 399
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 335
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|449469945|ref|XP_004152679.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
Length = 398
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|225428386|ref|XP_002283544.1| PREDICTED: 26S protease regulatory subunit S10B homolog B isoform 1
[Vitis vinifera]
gi|297744432|emb|CBI37694.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 335
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|392394101|ref|YP_006430703.1| ATP-dependent Zn protease [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525179|gb|AFM00910.1| ATP-dependent Zn protease [Desulfitobacterium dehalogenans ATCC
51507]
Length = 493
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 189 AGEPAKLIRQRYREAADIIKKGK--MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
AG A+ +R+ +++A + KK K +FI+++D + G + +Q +N L
Sbjct: 139 AGVGAERVRKLFKKARETAKKEKKDRAIIFIDEMDILGAKRGSNVSHHEYDQTLNQLL-- 196
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304
V++ G+ N E+ ++ +I N L L+R GR ++ P +E R+
Sbjct: 197 -------VEMDGLGNSEQGSQILVIAATNRAEALDPALLRPGRFDRQVKVDLPDKEGRLA 249
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
+ + T N P V L + ++ +F GA
Sbjct: 250 ILT--IHTKNKPLAPCVDL-EQIAQETYNFSGA 279
>gi|254584302|ref|XP_002497719.1| ZYRO0F11946p [Zygosaccharomyces rouxii]
gi|238940612|emb|CAR28786.1| ZYRO0F11946p [Zygosaccharomyces rouxii]
Length = 444
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 219 IKSPTGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 277
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + L M +
Sbjct: 278 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMEL--------LTQMDGFDS 324
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 318
+ II+ N TL L+R GR+++ P + + T NV K E
Sbjct: 325 LGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEVFKIHTTNVKKAGEFDFE 384
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 385 AAVKMSDGFNGADI 398
>gi|242398512|ref|YP_002993936.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
739]
gi|242264905|gb|ACS89587.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
739]
Length = 810
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 38/222 (17%)
Query: 164 IWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + +GI G GE K IR+ +R+A ++
Sbjct: 557 LYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIREIFRKA----RQAAP 612
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+FI+++DA A R G V ++++N L M EEN V +I
Sbjct: 613 TVIFIDEIDAIAPRRGSDVNR-VTDRLINQLLTE------------MDGIEENSGVVVIA 659
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 326
N L L+R GR ++ P + + + T NVP E++ K +
Sbjct: 660 ATNRPDILDPALLRPGRFDRIILVPAPDVKARLEIFKVHTRNVPLAKDVNLEELAKRTEG 719
Query: 327 FPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKE 368
+ G I+ +R ++ +R+ ISE GI + G R + +E
Sbjct: 720 YTGADIE--AVVREAAFNT-MRRAISE-GIIKPGTRASDIRE 757
>gi|148907029|gb|ABR16658.1| unknown [Picea sitchensis]
Length = 398
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ V +GI + ++ E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGDIDYE 334
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|195997743|ref|XP_002108740.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190589516|gb|EDV29538.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 387
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 170 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 225
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 226 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 275
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + S I + + E +VKL +
Sbjct: 276 ATNRPDTLDPALLRPGRLDRKIQIALPNEQARLEILKIHASPITKHGEIDYEAVVKLAEE 335
Query: 327 FPGQSI 332
F G +
Sbjct: 336 FNGADL 341
>gi|193629665|ref|XP_001951431.1| PREDICTED: 26S protease regulatory subunit 10B-like [Acyrthosiphon
pisum]
Length = 395
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 233
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 283
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + + I + + E IVKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDILKIHAAPITKQGEIDYEAIVKLSDN 343
Query: 327 FPGQSI 332
F G +
Sbjct: 344 FNGADL 349
>gi|344304021|gb|EGW34270.1| hypothetical protein SPAPADRAFT_59691 [Spathaspora passalidarum
NRRL Y-27907]
Length = 413
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 117/296 (39%), Gaps = 67/296 (22%)
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLR---QYSLD-NTLDGLYIAPAFMDKVVVH 145
K + D F SG Y V + LR + SLD TL + I P +D +V +
Sbjct: 86 KQLDDERFIVKASSGPRYIVGCRNTIKKENLRNGVRVSLDMTTLTIMRILPREVDPLVYN 145
Query: 146 IT----------------------KNFLNLP----------NVKVPLILGIWGGKGQGKS 173
+T + + LP +K P + ++G G GK+
Sbjct: 146 MTTFEPGEISFNGIGGLNEQIRELREVIELPLKNPELFTRVGIKSPKGVLLYGPPGTGKT 205
Query: 174 FQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222
+ V A +G N GE A+LIR+ + A K+ + C +F++++DA
Sbjct: 206 LLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA----KEHEPCIIFMDEVDA 261
Query: 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 282
GR ++ T ++ + TLM + + Q+ G + + II+ N TL
Sbjct: 262 IGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQTKIIMATNRPDTLDP 311
Query: 283 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------EDIVKLVDTFPGQSI 332
L+R GR+++ P + + T V K E +VK+ D F G I
Sbjct: 312 ALLRAGRLDRKIEIPLPNESGRLEIFKIHTSKVSKHGEFDFEAMVKMSDGFNGADI 367
>gi|164663143|ref|XP_001732693.1| hypothetical protein MGL_0468 [Malassezia globosa CBS 7966]
gi|159106596|gb|EDP45479.1| hypothetical protein MGL_0468 [Malassezia globosa CBS 7966]
Length = 382
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+L+R+ + A
Sbjct: 157 IKSPKGVLLYGPPGTGKTLLARAVAATLDTNFLKVVASAIVDKYIGESARLVREMFAYA- 215
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K + C +F++++DA GR ++ T ++ + TLM + + Q+ G ++
Sbjct: 216 ---KTKEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DQ 262
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKE 318
+ +I+ N TL L+R GR+++ P + R+ + I + D + E
Sbjct: 263 LGKTKVIMATNRPDTLDPALLRPGRIDRKIEIPLPNEQSRLEILKIHTRPIAKRDELDYE 322
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 323 AIVKLSDGFNGADL 336
>gi|29825445|gb|AAO92283.1| 26S proteasome regulatory subunit [Dermacentor variabilis]
Length = 402
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ Q E F K+ ++ GE A+LIR+ + A D +
Sbjct: 185 LYGPPGTGKTLLARAVASQIEANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 240
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 241 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 290
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + + I + V E +VKL D
Sbjct: 291 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVKIHATPITKHGEVDWEAVVKLSDG 350
Query: 327 FPGQSI 332
F G +
Sbjct: 351 FNGADL 356
>gi|356510074|ref|XP_003523765.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
isoform 1 [Glycine max]
gi|356518571|ref|XP_003527952.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
isoform 1 [Glycine max]
Length = 398
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|297791633|ref|XP_002863701.1| regulatory particle triple-a 4A [Arabidopsis lyrata subsp. lyrata]
gi|297309536|gb|EFH39960.1| regulatory particle triple-a 4A [Arabidopsis lyrata subsp. lyrata]
Length = 400
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 31/188 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 170 IKPPKCVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P +R D + + +GI + + E
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 319 DIVKLVDT 326
IVKL +
Sbjct: 336 AIVKLAEV 343
>gi|426359627|ref|XP_004047068.1| PREDICTED: 26S protease regulatory subunit 10B-like [Gorilla
gorilla gorilla]
Length = 389
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + +++ N GE A LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAIASQLDCNFLKVVSSSIVDKYIGESAHLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|195036578|ref|XP_001989747.1| GH18966 [Drosophila grimshawi]
gi|193893943|gb|EDV92809.1| GH18966 [Drosophila grimshawi]
Length = 398
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + ++M N GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 236
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T +++ + TLM + + G +V II+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSSDREIQRTLMELLNQMDGFDALG--------QVKIIM 286
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEIARLEILKIHAAPLAKRGEIDYEAVVKLSDL 346
Query: 327 FPGQSI 332
F G +
Sbjct: 347 FNGADL 352
>gi|346472533|gb|AEO36111.1| hypothetical protein [Amblyomma maculatum]
Length = 361
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ Q E F K+ ++ GE A+LIR+ + A D +
Sbjct: 144 LYGPPGTGKTLLARAVASQIEANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 199
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 200 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 249
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + + I + V E +VKL D
Sbjct: 250 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVKIHAAPITKHGEVDWEAVVKLSDG 309
Query: 327 FPGQSI 332
F G +
Sbjct: 310 FNGADL 315
>gi|402855921|ref|XP_003892557.1| PREDICTED: 26S protease regulatory subunit 10B-like [Papio anubis]
Length = 418
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ ++ GE A+LIR E + + +
Sbjct: 201 LYGPPGTGKTLLARAVASQLDCSFLKVVSSSIVDKYIGESARLIR----EMCNYARDHQP 256
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM++ + Q+ G RV +I+
Sbjct: 257 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN-----QMDGFDTLH---RVKMIM 306
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ R D + + +G I + + E IVKL D
Sbjct: 307 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQVRLDTLKIHAGPITKHGEIDYEAIVKLSDG 366
Query: 327 FPGQSI 332
F G +
Sbjct: 367 FNGADL 372
>gi|390472883|ref|XP_002756429.2| PREDICTED: 26S protease regulatory subunit 10B-like [Callithrix
jacchus]
Length = 402
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A LIR+ + A D +
Sbjct: 185 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESAHLIREMFNYARD----HQP 240
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR+ ++ T ++ + TLM L M + RV +I+
Sbjct: 241 CIIFMDEIDAIGGRL--FSEGTSADREIQRTLME--------SLNQMDGFDTLHRVKMIM 290
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 291 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 350
Query: 327 FPGQSI 332
F G +
Sbjct: 351 FNGADL 356
>gi|146416949|ref|XP_001484444.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 418
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 95/225 (42%), Gaps = 33/225 (14%)
Query: 127 NTLDGLYIAPAFMDKVVVHITKN--FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184
NT+ GL + +V+ KN +K+P + ++G G GK+ + V A +G
Sbjct: 162 NTIGGLTEQVRELREVIELPLKNPELFTRVGIKLPKGVLLYGPPGTGKTLLAKAVAATIG 221
Query: 185 IN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 233
N GE A+LIR+ + A K+ C +F++++DA GR ++
Sbjct: 222 ANFIFSPASAIVDKYIGESARLIREMFAYA----KEHAPCIIFMDEVDAIGGRR--FSEG 275
Query: 234 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK- 292
T ++ + TLM + + G + +I+ N TL L+R GR+++
Sbjct: 276 TSADREIQRTLMELLNQMDGFDTLG--------QTKVIMATNRPDTLDPALLRAGRLDRK 327
Query: 293 -FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 332
P R+ + S + + E +VK+ D F G I
Sbjct: 328 IEIGLPNEAGRLEIFKIHTSKVSKQGEFDFEAVVKMSDGFNGADI 372
>gi|313238058|emb|CBY13177.1| unnamed protein product [Oikopleura dioica]
Length = 389
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSGIFRTD-NVPKEDIVKLVDT 326
N L L+R GR+++ P R D + + S T + E IVKL DT
Sbjct: 278 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQARLDIMKIHSRPLATHGEIDYEAIVKLSDT 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|50305331|ref|XP_452625.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641758|emb|CAH01476.1| KLLA0C09592p [Kluyveromyces lactis]
Length = 434
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 35/196 (17%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 209 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 267
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 268 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 317
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK----- 317
+I+ N TL L+R GR+++ P R+ + T NV K
Sbjct: 318 ---TKVIMATNRPDTLDPALLRPGRLDRKIEISLPNEAGRLEIFK--IHTSNVKKAGEFD 372
Query: 318 -EDIVKLVDTFPGQSI 332
E VK+ D F G I
Sbjct: 373 FEAAVKMSDGFNGADI 388
>gi|356551904|ref|XP_003544312.1| PREDICTED: 26S protease regulatory subunit 10B homolog A-like
isoform 1 [Glycine max]
Length = 399
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 335
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|449469943|ref|XP_004152678.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
gi|449515750|ref|XP_004164911.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
Length = 398
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P +R + + + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHAAGIAKHGEIDYE 334
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|11498895|ref|NP_070126.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
gi|41688749|sp|O28972.1|Y1297_ARCFU RecName: Full=Cell division cycle protein 48 homolog AF_1297
gi|2649281|gb|AAB89948.1| cell division control protein 48, AAA family (cdc48-1)
[Archaeoglobus fulgidus DSM 4304]
Length = 733
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREA 203
N+K P + ++G G GK+ + V + + + G GE K +R+ +R+A
Sbjct: 485 NIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 544
Query: 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
+ C +F +++D+ A R GG V ++V+ L +L G+ E
Sbjct: 545 RQVAP----CVIFFDEIDSLAPRRGGIGDSHVTERVVSQLL---------TELDGL---E 588
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFR----TDNVPK 317
E V +I N + L+R GR+E+ + P ++ R+ + R D+V
Sbjct: 589 ELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNI 648
Query: 318 EDIVKLVDTFPGQSID 333
E++ + + + G I+
Sbjct: 649 EELAEKTEGYSGADIE 664
>gi|387915818|gb|AFK11518.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6
[Callorhinchus milii]
Length = 389
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 31/181 (17%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E +VKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAVVKLSDG 337
Query: 327 F 327
F
Sbjct: 338 F 338
>gi|261403322|ref|YP_003247546.1| ATPase AAA [Methanocaldococcus vulcanius M7]
gi|261370315|gb|ACX73064.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
M7]
Length = 903
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAA 204
V+ P + ++G G GK+ + V + G N + GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ C +F +++DA A + G V +++VN L +L GM EE
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM---EE 586
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVPK----E 318
V +I N + + L+R GR+++ P ++ R+ + R+ N+ + E
Sbjct: 587 PKDVIVIAATNRPDIIDSALLRPGRLDRVILVPVPDEKARLDILKIHTRSMNLDEDVNLE 646
Query: 319 DIVKLVDTFPGQSID 333
++ K + + G I+
Sbjct: 647 ELAKKTEGYTGADIE 661
>gi|238882613|gb|EEQ46251.1| ribosome biogenesis ATPase RIX7 [Candida albicans WO-1]
Length = 827
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 34/176 (19%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELV-------FAKMG----INGNAGEPAKLIRQRYREAA 204
+ P + +WG G GK+ + V F + +N GE K +RQ ++ A
Sbjct: 553 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 611
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 612 ---RASTPCIIFFDELDALVPRRD-TSMSESSSRVVNTLL---------TELDGL----- 653
Query: 265 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 316
N R + V G N + ++R GR++K + PT E+R+ + + RT+N P
Sbjct: 654 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTNNSP 709
>gi|402223610|gb|EJU03674.1| 26S proteasome subunit P45 [Dacryopinax sp. DJM-731 SS1]
Length = 399
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A M N GE A+L+R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATMSTNFLKVVSSAIVDKYIGESARLVREMFGYA- 233
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 234 ---REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKE 318
R +I+ N TL L+R GR+++ P + R+ + +G+ + + +
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAAGVNKGGEIDFD 340
Query: 319 DIVKLVDTFPGQSI 332
+VKL D F G +
Sbjct: 341 AVVKLSDGFNGADL 354
>gi|410074777|ref|XP_003954971.1| hypothetical protein KAFR_0A04010 [Kazachstania africana CBS 2517]
gi|372461553|emb|CCF55836.1| hypothetical protein KAFR_0A04010 [Kazachstania africana CBS 2517]
Length = 424
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 199 IKPPKGVLLYGPPGTGKTLLAKAVSATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 257
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 258 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 307
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 318
II+ N TL L+R GR+++ P + + T NV K E
Sbjct: 308 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEIFKIHTANVKKVGEFDFE 364
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 365 AAVKMSDGFNGADI 378
>gi|409081325|gb|EKM81684.1| hypothetical protein AGABI1DRAFT_111952 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 399
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
R +I+ N TL L+R GR+++ P + R+ + + + + E
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAKPVNKASEIDYE 340
Query: 319 DIVKLVDTFPGQSI 332
IVKL D+F G +
Sbjct: 341 AIVKLSDSFNGADL 354
>gi|426196558|gb|EKV46486.1| 26S proteasome regulatory complex ATPase RPT4 [Agaricus bisporus
var. bisporus H97]
Length = 399
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
R +I+ N TL L+R GR+++ P + R+ + + + + E
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAKPVNKASEIDYE 340
Query: 319 DIVKLVDTFPGQSI 332
IVKL D+F G +
Sbjct: 341 AIVKLSDSFNGADL 354
>gi|297181630|gb|ADI17814.1| hypothetical protein [uncultured Sphingobacteriales bacterium
HF0130_33B19]
Length = 623
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 437 VPEGCTDPAAANYDPTARSDDGSCNY 462
+P GCTDPAA+NYD +A DDGSC Y
Sbjct: 227 LPNGCTDPAASNYDASATCDDGSCTY 252
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 22/37 (59%)
Query: 428 KAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
A+ QV GCTDPAA NYD TA DDGSC Y
Sbjct: 16 NASGQVGTCAVYGCTDPAADNYDATATVDDGSCTYTI 52
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 437 VPEGCTDPAAANYDPTARSDDGSCNY 462
+P+GCTDP A NYD +A DDGSC Y
Sbjct: 278 LPDGCTDPNADNYDASALCDDGSCTY 303
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 437 VPEGCTDPAAANYDPTARSDDGSC 460
+P+GCTDP A+NYD A DDGSC
Sbjct: 126 LPDGCTDPTASNYDANAVCDDGSC 149
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 440 GCTDPAAANYDPTARSDDGSCNY 462
GCTDP A NYD A +DDGSC Y
Sbjct: 54 GCTDPLACNYDANANTDDGSCTY 76
>gi|289192266|ref|YP_003458207.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
FS406-22]
gi|288938716|gb|ADC69471.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
FS406-22]
Length = 903
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 39/198 (19%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAA 204
V+ P + ++G G GK+ + V + G N + GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ C +F +++DA A + G V +++VN L +L GM E
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----E 585
Query: 265 NPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDRIGVCSGIFR--------TDNV 315
P+ I++ + + P L+R GR+++ P +++ + IF+ ++V
Sbjct: 586 EPKDVIVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARL--DIFKIHTRAMNLAEDV 643
Query: 316 PKEDIVKLVDTFPGQSID 333
E++ K + + G I+
Sbjct: 644 SLEELAKKTEGYTGADIE 661
>gi|116788974|gb|ABK25069.1| unknown [Picea sitchensis]
Length = 398
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGEIDYE 334
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|367000972|ref|XP_003685221.1| hypothetical protein TPHA_0D01470 [Tetrapisispora phaffii CBS 4417]
gi|357523519|emb|CCE62787.1| hypothetical protein TPHA_0D01470 [Tetrapisispora phaffii CBS 4417]
Length = 455
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 230 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK 289
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 290 D----HEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFENLGQ 338
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 318
II+ N TL L+R GR+++ P + + T+ V K E
Sbjct: 339 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEIFKIHTEKVKKIGEFDFE 395
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 396 AAVKMSDGFNGADI 409
>gi|356564312|ref|XP_003550399.1| PREDICTED: proteasome-activating nucleotidase-like [Glycine max]
Length = 833
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 604 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 663
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 664 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 709
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 710 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 769
Query: 319 DIVKLVDTFPGQSI 332
+VKL + F G +
Sbjct: 770 AVVKLAEGFNGADL 783
>gi|195442534|ref|XP_002069009.1| GK12331 [Drosophila willistoni]
gi|194165094|gb|EDW79995.1| GK12331 [Drosophila willistoni]
Length = 403
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ +N GE A+ IR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDVNFLKIVSSAIVDKYIGESARQIREMFAYARD----HQP 241
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 291
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + + + + ++ E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKLEIPLPNETARMDILKIHAAPLAKEGDIDYEAIVKLSDR 351
Query: 327 FPGQSI 332
F G +
Sbjct: 352 FNGADL 357
>gi|334135697|ref|ZP_08509178.1| ATPase, AAA family [Paenibacillus sp. HGF7]
gi|333606759|gb|EGL18092.1| ATPase, AAA family [Paenibacillus sp. HGF7]
Length = 521
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 25/153 (16%)
Query: 199 RYREAADIIKKGKMCCLFINDLDAG-AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
R +EA C L+I++++ G AG +G + + +MV L
Sbjct: 312 RLKEALSTADHVSPCVLWIDEIEKGLAGAIGASNDGGTSTRMVGQFLF------------ 359
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSGIFRT 312
+ QE RV ++ T ND S L L+R GR ++ ++ A RED I +
Sbjct: 360 --WLQESMARVFVVATANDVSKLPPELLRRGRFDELFFVDLPTAKEREDIIKIYIEKGLK 417
Query: 313 DNVPKEDIVKLVDTFPGQSIDFFGA-LRARVYD 344
NV + + KLV G F GA L A V D
Sbjct: 418 TNVSPDLLEKLVHISEG----FAGADLEAAVRD 446
>gi|195108917|ref|XP_001999039.1| GI23296 [Drosophila mojavensis]
gi|193915633|gb|EDW14500.1| GI23296 [Drosophila mojavensis]
Length = 393
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + +++ N GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIREMFSYARD----HQP 231
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 281
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + + + + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKLEIPLPNEIARLDILKIHAAPLAKQGEIDYEAVVKLSDM 341
Query: 327 FPGQSI 332
F G +
Sbjct: 342 FNGADL 347
>gi|384245132|gb|EIE18627.1| hypothetical protein COCSUDRAFT_49151 [Coccomyxa subellipsoidea
C-169]
Length = 623
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 440 GCTDPAAANYDPTARSDDGSCNY 462
GCTDP+A+NYDP A ++DGSC +
Sbjct: 114 GCTDPSASNYDPNATAEDGSCTF 136
>gi|162606426|ref|XP_001713243.1| 26S proteasome AAA-ATPase subunit [Guillardia theta]
gi|12580709|emb|CAC27027.1| 26S proteasome AAA-ATPase subunit [Guillardia theta]
Length = 395
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-----QCELVFAKMGINGNA------GEPAKLIRQRYREAA 204
+K+P L ++G G GK+ C + + I G+A GE A++IR+ Y A
Sbjct: 168 IKIPRGLLLYGPPGTGKTLLARYISCSIDSIFLKIVGSAIVDKYIGESARIIREIYNFA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K K C +FI+++DA G+ ++ + ++ ++ TL+ + + QL G Y+Q E
Sbjct: 227 ---KFQKRCIIFIDEVDAIGGKR--FSEGSSADREIHRTLIELLN-----QLDG-YDQYE 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
N + I+ N L L+R GR+++ P
Sbjct: 276 N--IKTIMATNRPDILDPALLRPGRLDRKILIP 306
>gi|365986659|ref|XP_003670161.1| hypothetical protein NDAI_0E01020 [Naumovozyma dairenensis CBS 421]
gi|343768931|emb|CCD24918.1| hypothetical protein NDAI_0E01020 [Naumovozyma dairenensis CBS 421]
Length = 443
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 218 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 276
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 277 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 326
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 318
II+ N TL L+R GR+++ P + + T+ V K E
Sbjct: 327 T---KIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEIFKIHTEKVKKIGEFDFE 383
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 384 AAVKMSDGFNGADI 397
>gi|327400638|ref|YP_004341477.1| AAA family ATPase [Archaeoglobus veneficus SNP6]
gi|327316146|gb|AEA46762.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6]
Length = 734
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREA 203
++K P + ++G G GK+ + V + + + G GE K +R+ +R+A
Sbjct: 486 DIKPPKGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 545
Query: 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
+ C LF +++D+ A R GG V ++V+ L +L GM E
Sbjct: 546 RQVAP----CVLFFDEIDSLAPRRGGGADSHVTERVVSQLL---------TELDGM---E 589
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
E V +I N + L+R GR+E+ + P
Sbjct: 590 ELKDVVVIAATNRPDIVDPALLRPGRIERHIYIP 623
>gi|400597658|gb|EJP65388.1| ATPase protein [Beauveria bassiana ARSEF 2860]
Length = 733
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 29/169 (17%)
Query: 164 IWGGKGQGKSFQCE-----------LVFAKMGINGNAGEPAKLIRQRYREAADIIKKGKM 212
+WG G GK+ + L+ +N GE + +R+ + A +
Sbjct: 498 LWGPPGCGKTLVAQAVANEAQASFILINGPELLNKYVGESERAVRELFSRA----RSSTP 553
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C LF ++ D+ A R G ++VNA L +L G ++ V +I
Sbjct: 554 CILFFDEFDSIAPRRDGGGASEAGTRVVNALL---------TELDGARGRDG---VYVIG 601
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED 319
T N + ++R GR+ K F PT +R+ + I+RT +V D
Sbjct: 602 TTNRPDMIDDAMLRPGRLSKQLFLDLPTAAERVDILLAIYRTRHVGATD 650
>gi|1526426|dbj|BAA11338.1| proteasome subunit p42 [Homo sapiens]
Length = 389
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV + +
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMTM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|254387365|ref|ZP_05002615.1| ATPase [Streptomyces sp. Mg1]
gi|194346160|gb|EDX27126.1| ATPase [Streptomyces sp. Mg1]
Length = 521
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 37/201 (18%)
Query: 151 LNLPNVKVPLILGIWGGKGQGKSF-------QCELVFAKMGINGNAGEPAKLIRQRYREA 203
L +++ P + + G G GKS Q +L ++ + G+ R+REA
Sbjct: 261 LRATDLRPPRGVLLVGVPGCGKSLSAKAIAAQWQLPLYRLDMGSIHGKYLGESEGRFREA 320
Query: 204 ADIIKKGKMCCLFINDLD---AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260
+ + C L+I++++ AGAG G Q + + +
Sbjct: 321 LETADRVAPCVLWIDEIEKGLAGAGDGTGVPQRIIGQFL-------------------FW 361
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSGIFRTDNV 315
QE R ++ T ND +L L+R GR ++ ++ A RE+ IG+ + +
Sbjct: 362 LQESQSRSFVVATANDVRSLPPELLRKGRFDELFFVDLPDAQDREEIIGIYYRRYLKTDP 421
Query: 316 PKEDIVKLVDT---FPGQSID 333
E + +LVD F G I+
Sbjct: 422 DPEQLARLVDLSEGFAGSDIE 442
>gi|68470308|ref|XP_720658.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
gi|68470569|ref|XP_720530.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
gi|40362746|gb|AAR84642.1| AAA ATPase [Candida albicans]
gi|46442402|gb|EAL01691.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
gi|46442537|gb|EAL01825.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
Length = 827
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 34/176 (19%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELV-------FAKMG----INGNAGEPAKLIRQRYREAA 204
+ P + +WG G GK+ + V F + +N GE K +RQ ++ A
Sbjct: 553 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 611
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 612 ---RASTPCIIFFDELDALVPRRD-TSMSESSSRVVNTLL---------TELDGL----- 653
Query: 265 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 316
N R + V G N + ++R GR++K + PT E+R+ + + RT N P
Sbjct: 654 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTSNSP 709
>gi|195390540|ref|XP_002053926.1| GJ24151 [Drosophila virilis]
gi|194152012|gb|EDW67446.1| GJ24151 [Drosophila virilis]
Length = 399
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + +++ N GE A+LIR+ + A D +
Sbjct: 182 LYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIREMFSYARD----HQP 237
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 238 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 287
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + + + + + E +VKL D
Sbjct: 288 ATNRPDTLDPALLRPGRLDRKLEIPLPNEIARLDILKIHAAPLSKQGEIDYEAVVKLSDM 347
Query: 327 FPGQSI 332
F G +
Sbjct: 348 FNGADL 353
>gi|207340961|gb|EDZ69150.1| YOR259Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 421
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|195432950|ref|XP_002064478.1| GK23803 [Drosophila willistoni]
gi|194160563|gb|EDW75464.1| GK23803 [Drosophila willistoni]
Length = 397
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P E R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEEARLEILKIHALIIAKHGEIDYEAIVKLSDN 345
Query: 327 FPGQSI 332
F G +
Sbjct: 346 FNGADL 351
>gi|1147800|gb|AAA85134.1| Sug2p [Saccharomyces cerevisiae]
Length = 437
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|353242842|emb|CCA74450.1| probable RPT4-26S proteasome regulatory subunit [Piriformospora
indica DSM 11827]
Length = 389
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V + + N GE A+LIR+ + A ++ +
Sbjct: 172 LYGPPGTGKTLLARAVASTLQTNFLKVVSSAIVDKYIGESARLIREMFGYA----REHEP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKLIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + ++ ++ E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHARSVNKSGDIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|312373685|gb|EFR21384.1| hypothetical protein AND_17121 [Anopheles darlingi]
Length = 392
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + ++ E +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGDIDYEAVVKLSDN 340
Query: 327 FPGQSI 332
F G +
Sbjct: 341 FNGADL 346
>gi|281344564|gb|EFB20148.1| hypothetical protein PANDA_019466 [Ailuropoda melanoleuca]
Length = 389
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|238926612|ref|ZP_04658372.1| AAA family ATPase [Selenomonas flueggei ATCC 43531]
gi|238885558|gb|EEQ49196.1| AAA family ATPase [Selenomonas flueggei ATCC 43531]
Length = 523
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 23/164 (14%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSF-------QCELVFAKMGINGNAGEPAKLIRQRY 200
++ L +K P + + G G GKS Q +L ++ G Q+
Sbjct: 259 RSILREKGLKSPRGILLVGVPGCGKSLSAKAIAAQWKLPLYRLDFATVQGSYVGQTEQQL 318
Query: 201 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260
++A + C L+I++++ G G T V+ +MV L +
Sbjct: 319 KDALTTAENVAPCILWIDEIEKGLSGAGSTNDGGVSTRMVGQFLF--------------W 364
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 302
QE +V ++ T ND S L + L+R GR ++ ++ PT E+R
Sbjct: 365 LQECRKQVFVVATANDVSMLPSELLRRGRFDELFFVDLPTAEER 408
>gi|347965832|ref|XP_321726.5| AGAP001407-PA [Anopheles gambiae str. PEST]
gi|333470333|gb|EAA01092.5| AGAP001407-PA [Anopheles gambiae str. PEST]
Length = 392
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + ++ E +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGDIDYEAVVKLSDN 340
Query: 327 FPGQSI 332
F G +
Sbjct: 341 FNGADL 346
>gi|455649926|gb|EMF28716.1| ATPase [Streptomyces gancidicus BKS 13-15]
Length = 522
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 32/147 (21%)
Query: 199 RYREAADIIKKGKMCCLFINDLDAG-AGR--MGGTTQYTVNNQMVNATLMNIADNPTNVQ 255
R+REA + + C L+I++++ G AG+ M G Q + +
Sbjct: 316 RFREALAMADRVAPCILWIDEIEKGLAGKDDMSGVPQRIIGQFL---------------- 359
Query: 256 LPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR-- 311
+ QE N R ++ T ND +L L+R GR ++ ++ P +DR + FR
Sbjct: 360 ---FWLQESNSRAFVVATANDIRSLPPELLRKGRFDELFFVDLPDSQDRREIIELYFRRY 416
Query: 312 --TDNVPKEDIVKLVDT---FPGQSID 333
D P E + +LVD F G I+
Sbjct: 417 LKIDPEP-EQLDRLVDMSEGFAGSDIE 442
>gi|71028288|ref|XP_763787.1| 26S proteasome regulatory subunit [Theileria parva strain Muguga]
gi|68350741|gb|EAN31504.1| 26S proteasome regulatory subunit, putative [Theileria parva]
Length = 415
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 33/239 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + +G N GE AK+IR+ + A
Sbjct: 190 IKPPKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIREMFGYAK 249
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +FI+++DA GR +Q T ++ + TLM + L G +E
Sbjct: 250 D----NQPCIIFIDEIDAIGGRR--FSQGTSADREIQRTLMELL-----THLDGF---DE 295
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVPK----E 318
+V II+ N L L+R GR+++ P + RI + + N+
Sbjct: 296 LGQVKIIMATNRPDVLDPALLRPGRIDRKIEIPLPNETARIEILKIHTQKLNIQYPINFN 355
Query: 319 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK--EGPPTFEQ 375
+I KL D F G + +R +I E + ++L +K EG ++EQ
Sbjct: 356 NICKLCDGFNGADLRNICTEAGIHAIRNMRDYIIEEDFFKAARKLTENKKLEGTLSYEQ 414
>gi|156363865|ref|XP_001626260.1| predicted protein [Nematostella vectensis]
gi|156213130|gb|EDO34160.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 174 LFGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFGYARD----HEP 229
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + + G +V +I+
Sbjct: 230 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------QVKMIM 279
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + S I + + E +VKL D
Sbjct: 280 ATNRPDTLDPALLRPGRLDRKIEIALPNEQARMDILKIHSSRITKHGEIDYEAVVKLSDG 339
Query: 327 FPGQSI 332
F G +
Sbjct: 340 FNGADL 345
>gi|398365977|ref|NP_014902.3| proteasome regulatory particle base subunit RPT4 [Saccharomyces
cerevisiae S288c]
gi|2506090|sp|P53549.4|PRS10_YEAST RecName: Full=26S protease subunit RPT4; AltName: Full=26S protease
subunit SUG2; AltName: Full=Proteasomal cap subunit
gi|403071972|pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
gi|1420585|emb|CAA99481.1| CRL13 [Saccharomyces cerevisiae]
gi|1931623|gb|AAB51594.1| proteasome cap subunit [Saccharomyces cerevisiae]
gi|190407563|gb|EDV10830.1| 26S proteasome cap subunit component [Saccharomyces cerevisiae
RM11-1a]
gi|256269612|gb|EEU04894.1| Rpt4p [Saccharomyces cerevisiae JAY291]
gi|259149735|emb|CAY86539.1| Rpt4p [Saccharomyces cerevisiae EC1118]
gi|285815133|tpg|DAA11026.1| TPA: proteasome regulatory particle base subunit RPT4
[Saccharomyces cerevisiae S288c]
gi|323302973|gb|EGA56777.1| Rpt4p [Saccharomyces cerevisiae FostersB]
gi|323331571|gb|EGA72986.1| Rpt4p [Saccharomyces cerevisiae AWRI796]
gi|323335464|gb|EGA76750.1| Rpt4p [Saccharomyces cerevisiae Vin13]
gi|323346438|gb|EGA80726.1| Rpt4p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352176|gb|EGA84713.1| Rpt4p [Saccharomyces cerevisiae VL3]
gi|349581412|dbj|GAA26570.1| K7_Rpt4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296586|gb|EIW07688.1| Rpt4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 437
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|395504310|ref|XP_003756498.1| PREDICTED: 26S protease regulatory subunit 10B [Sarcophilus
harrisii]
Length = 387
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GE A+LIR+ + A D + C +F++++DA GR ++ T ++ + TLM + +
Sbjct: 207 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 260
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIG 304
Q+ G + RV +I+ N TL L+R GR+++ R D +
Sbjct: 261 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 312
Query: 305 VCSG-IFRTDNVPKEDIVKLVDTFPGQSI 332
+ +G I + + E IVKL D F G +
Sbjct: 313 IHAGPITKHGEIDYEAIVKLSDGFNGADL 341
>gi|308798689|ref|XP_003074124.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
gi|116000296|emb|CAL49976.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
Length = 723
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 27/151 (17%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREA 203
VK P L + G G GK+ V A+ G AGE K +R+ + A
Sbjct: 237 GVKFPRGLLLHGPPGTGKTEAVRAVSAEAGAETLTVSSGDVAGAYAGESEKRLRKVFERA 296
Query: 204 ADIIKKGKMCCLFINDLDA--GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 261
++KKG C + I++LDA R G + V Q++ TLM+ A + V
Sbjct: 297 RKLVKKGSPCVIVIDELDAMCPTRRDGNAHEARVVAQLL--TLMDGAGESSEVH------ 348
Query: 262 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
VP++ T + + + L R GR ++
Sbjct: 349 ------VPVVATTSRPNAIDPALRRPGRFDR 373
>gi|365758247|gb|EHN00098.1| Rpt4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 437
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 318
II+ N TL L+R GR+++ P + + T+ V K E
Sbjct: 321 T---KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTEKVKKTGEFDFE 377
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|301787789|ref|XP_002929310.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda
melanoleuca]
Length = 403
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIREMFNYARD----HQP 241
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 327 FPGQSI 332
F G +
Sbjct: 352 FNGADL 357
>gi|242008303|ref|XP_002424946.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus
corporis]
gi|212508560|gb|EEB12208.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus
corporis]
Length = 395
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 233
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 234 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 283
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAMPITKHGEIDYEAIVKLSDG 343
Query: 327 FPGQSI 332
F G +
Sbjct: 344 FNGADL 349
>gi|195059036|ref|XP_001995550.1| GH17814 [Drosophila grimshawi]
gi|193896336|gb|EDV95202.1| GH17814 [Drosophila grimshawi]
Length = 397
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 327 FPGQSI 332
F G +
Sbjct: 346 FNGADL 351
>gi|390954266|ref|YP_006418024.1| hypothetical protein Aeqsu_1520 [Aequorivita sublithincola DSM
14238]
gi|390420252|gb|AFL81009.1| hypothetical protein Aeqsu_1520 [Aequorivita sublithincola DSM
14238]
Length = 304
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 435 VPVPEGCTDPAAANYDPTARSDDGSCNYQ 463
+ V GCTDPA++NY+P A +DDGSC Y
Sbjct: 50 IAVILGCTDPASSNYNPDANTDDGSCVYN 78
>gi|442753613|gb|JAA68966.1| Putative 26s proteasome regulatory complex atpase rpt4 [Ixodes
ricinus]
Length = 404
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V ++ N GE A+LIR+ + A D +
Sbjct: 187 LYGPPGTGKTLLARAVATQIDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 242
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 243 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 292
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + + I + V E +VKL D
Sbjct: 293 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVKIHAAPITKHGEVDWEAVVKLSDG 352
Query: 327 FPGQSI 332
F G +
Sbjct: 353 FNGADL 358
>gi|190347457|gb|EDK39727.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 418
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 33/225 (14%)
Query: 127 NTLDGLYIAPAFMDKVVVHITKN--FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184
NT+ GL + +V+ KN +K P + ++G G GK+ + V A +G
Sbjct: 162 NTIGGLTEQVRELREVIELPLKNPELFTRVGIKSPKGVLLYGPPGTGKTLLAKAVAATIG 221
Query: 185 IN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 233
N GE A+LIR+ + A K+ C +F++++DA GR ++
Sbjct: 222 ANFIFSPASAIVDKYIGESARLIREMFAYA----KEHAPCIIFMDEVDAIGGRR--FSEG 275
Query: 234 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK- 292
T ++ + TLM + + G + +I+ N TL L+R GR+++
Sbjct: 276 TSADREIQRTLMELLNQMDGFDTLG--------QTKVIMATNRPDTLDPALLRAGRLDRK 327
Query: 293 -FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 332
P R+ + S + + E +VK+ D F G I
Sbjct: 328 IEIGLPNEAGRLEIFKIHTSKVSKQGEFDFEAVVKMSDGFNGADI 372
>gi|348681221|gb|EGZ21037.1| hypothetical protein PHYSODRAFT_557274 [Phytophthora sojae]
Length = 433
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 75/190 (39%), Gaps = 29/190 (15%)
Query: 164 IWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAADIIKKGKM 212
+ G G GK+ Q + +F K+ + G+ AKL+R + A + K
Sbjct: 212 LHGPPGTGKTLLARACAKQTDAIFLKLAAPQLVQMFIGDGAKLVRDAFELAKEKCKDENR 271
Query: 213 --CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269
+FI++LDA G R GG Q L+N QL G N N ++
Sbjct: 272 GGAIIFIDELDAIGTKRFGGEQSGDREVQRTMLELLN--------QLDGFTN---NTKIK 320
Query: 270 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKLVDTF 327
+I N L L+R GR+++ PT E R + R NV ED D
Sbjct: 321 VIAATNRPDVLDPALLRSGRLDRKIELPHPTEEARARILQIHSRKMNVDTEDTN--FDEL 378
Query: 328 PGQSIDFFGA 337
+ DF GA
Sbjct: 379 ARSTDDFNGA 388
>gi|15897351|ref|NP_341956.1| AAA ATPase [Sulfolobus solfataricus P2]
gi|13813572|gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus P2]
Length = 769
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 39/212 (18%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAA 204
++ P + ++G G GK+ + V + G N A GE K +R+ +R A
Sbjct: 507 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 565
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ C +F +++D+ A G T V ++VN L ++ G+ +
Sbjct: 566 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 612
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 318
RV +I N L L+R GR ++ + P ++ RI + RT +V E
Sbjct: 613 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTRTLPIDSSVNLE 670
Query: 319 DIVKLVDTFPGQSIDFFG------ALRARVYD 344
++ K ++ + G I+ LR + YD
Sbjct: 671 ELAKKLEGYTGADIEALARETTMKVLRQKYYD 702
>gi|226371786|gb|ACO51518.1| LP16188p [Drosophila melanogaster]
Length = 406
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 189 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 244
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 245 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 294
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 295 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 354
Query: 327 FPGQSI 332
F G +
Sbjct: 355 FNGADL 360
>gi|320583831|gb|EFW98044.1| 26S protease subunit, putative [Ogataea parapolymorpha DL-1]
Length = 422
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+L+R+ + A
Sbjct: 197 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLVREMFSYA- 255
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 256 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 304
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+ +I+ N TL L+R GR+++ P R+ + S I + E
Sbjct: 305 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEIFKIHTSKIKKQGEFDFE 362
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D F G I
Sbjct: 363 ALVKMSDGFNGADI 376
>gi|385302903|gb|EIF47009.1| 26s protease subunit rpt4 [Dekkera bruxellensis AWRI1499]
Length = 359
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+L+R+ + A
Sbjct: 134 IKQPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLVREMFSYA- 192
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 193 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG------ 241
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ +I+ N TL L+R GR+++ P + R+ + S + + + E
Sbjct: 242 --QTKVIMATNRPDTLDPALLRAGRLDRKIEVPLPNEAGRLEIFKIHMSKVQKKGEIELE 299
Query: 319 DIVKLVDTFPGQSI 332
+V++ D F G I
Sbjct: 300 TLVRMSDGFNGADI 313
>gi|6434958|gb|AAF08391.1|AF145310_1 26S proteasome regulatory complex subunit p42D [Drosophila
melanogaster]
Length = 390
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 173 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 228
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 229 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 278
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 279 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 338
Query: 327 FPGQSI 332
F G +
Sbjct: 339 FNGADL 344
>gi|198415591|ref|XP_002129627.1| PREDICTED: similar to GJ15827 [Ciona intestinalis]
Length = 388
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 171 LYGPPGTGKTLLARAVSSQLDANFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 226
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 227 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------QVKMIM 276
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 277 ATNRPDTLDPALLRPGRLDRKIRIDLPNEQGRMDILKIHAAPITKHGEIDYEAVVKLSDQ 336
Query: 327 FPGQSI 332
F G +
Sbjct: 337 FNGADL 342
>gi|15669345|ref|NP_248150.1| cell division protein CDC48 [Methanocaldococcus jannaschii DSM
2661]
gi|2492505|sp|Q58556.1|Y1156_METJA RecName: Full=Cell division cycle protein 48 homolog MJ1156
gi|1591785|gb|AAB99153.1| cell division control protein 48 (cdc48), AAA family
[Methanocaldococcus jannaschii DSM 2661]
Length = 903
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAA 204
V+ P + ++G G GK+ + V + G N + GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ C +F +++DA A + G V +++VN L +L GM E
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----E 585
Query: 265 NPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDR 302
P+ +++ + + P L+R GR+++ P +++
Sbjct: 586 EPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEK 624
>gi|284173309|ref|ZP_06387278.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
gi|384433872|ref|YP_005643230.1| AAA ATPase [Sulfolobus solfataricus 98/2]
gi|261602026|gb|ACX91629.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2]
Length = 759
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 39/212 (18%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAA 204
++ P + ++G G GK+ + V + G N A GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ C +F +++D+ A G T V ++VN L ++ G+ Q
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGI--QSL 601
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 318
N RV +I N L L+R GR ++ + P ++ RI + RT +V E
Sbjct: 602 N-RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTRTLPIDSSVNLE 660
Query: 319 DIVKLVDTFPGQSIDFFG------ALRARVYD 344
++ K ++ + G I+ LR + YD
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYD 692
>gi|151945344|gb|EDN63587.1| 26S proteasome cap subunit component [Saccharomyces cerevisiae
YJM789]
Length = 437
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
II+ N TL L+R GR+ + P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLHRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|148688744|gb|EDL20691.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6, isoform
CRA_a [Mus musculus]
Length = 212
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GE A+LIR+ + A D + C +F++++DA GR ++ T ++ + TLM + +
Sbjct: 33 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 86
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIG 304
Q+ G + RV +I+ N TL L+R GR+++ R D +
Sbjct: 87 -----QMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 138
Query: 305 VCSG-IFRTDNVPKEDIVKLVDTFPGQSI 332
+ +G I + + E IVKL D F G +
Sbjct: 139 IHAGPITKHGEIDYEAIVKLSDGFNGADL 167
>gi|307196021|gb|EFN77746.1| Peroxisome biogenesis factor 1 [Harpegnathos saltator]
Length = 929
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 28/198 (14%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLI-------RQRYRE 202
F N P +K+ + ++G G GK+ + + + G+N + + +L+ + R
Sbjct: 666 FRNAP-IKLQSGVLLYGMPGTGKTMLAKAIAGECGVNLISIKGPELLSKYIGVSEESVRN 724
Query: 203 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 262
+ ++ K C LF ++ D+ A R G V +++VN L QL G+ ++
Sbjct: 725 VFERARRAKPCVLFFDEFDSLAPRRGHDNT-GVTDRVVNQLL---------TQLDGVEDR 774
Query: 263 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK--- 317
E V I+ + L L+R GR++K P +R + + + ++ NV
Sbjct: 775 EG---VAIVAASSRPDMLDPALLRPGRLDKCLHCPLPNETERREIFTELCKSQNVDSATL 831
Query: 318 --EDIVKLVDTFPGQSID 333
E++ +L D F G I+
Sbjct: 832 DLEELARLSDGFTGADIN 849
>gi|63054416|ref|NP_587809.2| 19S proteasome regulatory subunit Rpt4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|46397658|sp|O74445.2|PRS10_SCHPO RecName: Full=Probable 26S protease subunit rpt4
gi|157310490|emb|CAA20682.2| 19S proteasome regulatory subunit Rpt4 (predicted)
[Schizosaccharomyces pombe]
Length = 388
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A +G+N GE A++IR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYA- 221
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 222 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 270
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 271 --QTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
>gi|409041194|gb|EKM50680.1| hypothetical protein PHACADRAFT_264077 [Phanerochaete carnosa
HHB-10118-sp]
Length = 399
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V A + N GE A+++R+ + A K+ +
Sbjct: 183 LYGPPGTGKTLLARAVAATLNTNFLKVVASAIVDKYIGESARVVREMFGYA----KEHEP 238
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + R +I+
Sbjct: 239 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKLIM 288
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + ++ + E IVKL D+
Sbjct: 289 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAQPVNKSGEIDYEAIVKLSDS 348
Query: 327 FPGQSI 332
F G +
Sbjct: 349 FNGADL 354
>gi|255727949|ref|XP_002548900.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
gi|240133216|gb|EER32772.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
Length = 825
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELV-------FAKMG----INGNAGEPAKLIRQRYREAA 204
+ P + +WG G GK+ + V F + +N GE + +RQ ++ A
Sbjct: 553 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFQRA- 611
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 612 ---RASTPCIIFFDELDALVPRRDNSMSES-SSRVVNTLL---------TELDGL----- 653
Query: 265 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDI 320
N R + V G N + ++R GR++K + P+ E+R+ + I R++N P
Sbjct: 654 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPSPEERLEILKTIVRSNNSPLHSD 713
Query: 321 VKLV 324
V LV
Sbjct: 714 VSLV 717
>gi|195442532|ref|XP_002069008.1| GK12330 [Drosophila willistoni]
gi|194165093|gb|EDW79994.1| GK12330 [Drosophila willistoni]
Length = 408
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + +++ +N GE A+ IR+ + A D +
Sbjct: 191 LYGPPGTGKTLLARAIASQLDVNFLKIVSSAIVDKYIGESARQIREMFAYARD----HQP 246
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 247 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 296
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + + + + + E IVKL D
Sbjct: 297 ATNRPDTLDPALLRPGRLDRKLEIPLPNEMARMDILKIHAAPLVKKGEIDYEAIVKLSDQ 356
Query: 327 FPGQSI 332
F G +
Sbjct: 357 FNGADL 362
>gi|388858178|emb|CCF48246.1| probable RPT4-26S proteasome regulatory subunit [Ustilago hordei]
Length = 408
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 183 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 241
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 242 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 290
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 291 --KTKIIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTKPVAKKEELDYE 348
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 349 AIVKLSDGFNGADL 362
>gi|386763913|ref|NP_572308.3| regulatory particle triple-A ATPase 4 [Drosophila melanogaster]
gi|383293243|gb|AAF46146.3| regulatory particle triple-A ATPase 4 [Drosophila melanogaster]
Length = 397
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 327 FPGQSI 332
F G +
Sbjct: 346 FNGADL 351
>gi|194896198|ref|XP_001978432.1| GG17681 [Drosophila erecta]
gi|190650081|gb|EDV47359.1| GG17681 [Drosophila erecta]
Length = 397
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 327 FPGQSI 332
F G +
Sbjct: 346 FNGADL 351
>gi|195469930|ref|XP_002099889.1| GE16469 [Drosophila yakuba]
gi|194187413|gb|EDX00997.1| GE16469 [Drosophila yakuba]
Length = 397
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 327 FPGQSI 332
F G +
Sbjct: 346 FNGADL 351
>gi|390600180|gb|EIN09575.1| 26S proteasome regulatory complex ATPase RPT4 [Punctularia
strigosozonata HHB-11173 SS5]
Length = 448
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 32/200 (16%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQ 198
FL + +K P + ++G G GK+ V A + N GE A+++R+
Sbjct: 170 FLRV-GIKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVRE 228
Query: 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
+ A D + C +F++++DA GR ++ T ++ + TLM + + Q+ G
Sbjct: 229 MFGYARD----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDG 277
Query: 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRT 312
+ RV +I+ N TL L+R GR+++ P + R+ + + + ++
Sbjct: 278 F---DSLGRVKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKS 334
Query: 313 DNVPKEDIVKLVDTFPGQSI 332
+ E IVKL D F G +
Sbjct: 335 GEIDYEAIVKLSDGFNGADL 354
>gi|194763525|ref|XP_001963883.1| GF21021 [Drosophila ananassae]
gi|190618808|gb|EDV34332.1| GF21021 [Drosophila ananassae]
Length = 397
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 327 FPGQSI 332
F G +
Sbjct: 346 FNGADL 351
>gi|358335648|dbj|GAA54299.1| 26S proteasome regulatory subunit T4, partial [Clonorchis sinensis]
Length = 595
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 378 LYGPPGTGKTLLARAVASQLDANFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 433
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 434 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 483
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R D + + S I + + E +VKL D
Sbjct: 484 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDIMKIHSAPIAKHGEIDWEAVVKLSDG 543
Query: 327 FPGQSI 332
F G +
Sbjct: 544 FNGADL 549
>gi|444318988|ref|XP_004180151.1| hypothetical protein TBLA_0D01240 [Tetrapisispora blattae CBS 6284]
gi|387513193|emb|CCH60632.1| hypothetical protein TBLA_0D01240 [Tetrapisispora blattae CBS 6284]
Length = 443
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 218 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 276
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 277 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLS-----QMDGFDNLGQ 326
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
II+ N TL L+R GR+++ P
Sbjct: 327 T---KIIMATNRPDTLDPALLRPGRLDRKIEIP 356
>gi|50424825|ref|XP_461002.1| DEHA2F14740p [Debaryomyces hansenii CBS767]
gi|49656671|emb|CAG89370.1| DEHA2F14740p [Debaryomyces hansenii CBS767]
Length = 415
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 35/196 (17%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 190 IKSPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 248
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 249 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 297
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK----- 317
+ +I+ N TL L+R GR+++ P R+ + T V K
Sbjct: 298 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFK--IHTTKVAKQGEFD 353
Query: 318 -EDIVKLVDTFPGQSI 332
E +VK+ D F G I
Sbjct: 354 FEAVVKMSDGFNGADI 369
>gi|50292351|ref|XP_448608.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527920|emb|CAG61571.1| unnamed protein product [Candida glabrata]
Length = 436
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 211 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 269
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 270 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 319
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
II+ N TL L+R GR+++ P
Sbjct: 320 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIP 349
>gi|94499450|ref|ZP_01305987.1| ATPase of the AAA+ class [Bermanella marisrubri]
gi|94428204|gb|EAT13177.1| ATPase of the AAA+ class [Oceanobacter sp. RED65]
Length = 490
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 32/188 (17%)
Query: 160 LILGIWG------GKGQGKSFQCELVFAKMGI--NGNAGEPAKLIRQRYREAADIIKKGK 211
L+LG+ G K S+Q L+ MG N GE K REA ++ +
Sbjct: 267 LLLGVQGSGKSLAAKAIAGSWQLPLLRLDMGALYNKFFGETEK----NLREALNLAQLMS 322
Query: 212 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
C L++++++ G G V+ +++ L +A+ P V + +
Sbjct: 323 PCVLWLDEIEKGLG--TDQNDSGVSQRILGTLLTWMAERPEPVFM--------------V 366
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 329
T ND L A ++R GR ++ ++ P E R + + N+ E + +DT
Sbjct: 367 ATANDIQKLPAEMVRKGRFDEVFFVDLPKEESRQAIFEIHLKKRNIDPESVE--LDTCIM 424
Query: 330 QSIDFFGA 337
QS F GA
Sbjct: 425 QSEGFSGA 432
>gi|340754488|ref|ZP_08691240.1| hypothetical protein FSAG_02050 [Fusobacterium sp. 2_1_31]
gi|229423993|gb|EEO39040.1| hypothetical protein FSAG_02050 [Fusobacterium sp. 2_1_31]
Length = 523
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 23/173 (13%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA-------KMGINGNAGEPAKLIRQRY 200
K+ L ++ P + + G G GKS + + A ++ G Q+
Sbjct: 259 KDLLRSKGLRSPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQSEQQL 318
Query: 201 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260
++A + C L+I++++ G G + V+ +MV L +
Sbjct: 319 KDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF--------------W 364
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311
QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 365 LQESKKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTAEERYDIIKMYMR 417
>gi|422314849|ref|ZP_16396300.1| hypothetical protein FPOG_00580 [Fusobacterium periodonticum D10]
gi|404593275|gb|EKA94845.1| hypothetical protein FPOG_00580 [Fusobacterium periodonticum D10]
Length = 523
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 23/173 (13%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA-------KMGINGNAGEPAKLIRQRY 200
K+ L ++ P + + G G GKS + + A ++ G Q+
Sbjct: 259 KDLLRSKGLRSPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQSEQQL 318
Query: 201 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260
++A + C L+I++++ G G + V+ +MV L +
Sbjct: 319 KDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF--------------W 364
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311
QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 365 LQESKKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTAEERYDIIKMYMR 417
>gi|322388707|ref|ZP_08062305.1| AAA family ATPase [Streptococcus infantis ATCC 700779]
gi|419842778|ref|ZP_14366113.1| ATPase, AAA family [Streptococcus infantis ATCC 700779]
gi|321140457|gb|EFX35964.1| AAA family ATPase [Streptococcus infantis ATCC 700779]
gi|385703513|gb|EIG40628.1| ATPase, AAA family [Streptococcus infantis ATCC 700779]
Length = 525
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 23/145 (15%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAG-AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
Q+ ++A + C L+I++++ G +G GG V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGATGGANDGGVSTRMVGQFLF----------- 364
Query: 257 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT-- 312
+ QE +V ++ T ND S L + L+R GR ++ ++ PT ++R + + F+
Sbjct: 365 ---WMQECKKQVFVVATANDVSMLPSELLRRGRFDELFFVDLPTADERKEILALYFKKYL 421
Query: 313 ----DNVPKEDIVKLVDTFPGQSID 333
+ ++I+++ D F G ++
Sbjct: 422 SLEFEGEFADNIIQISDGFTGADLE 446
>gi|195133630|ref|XP_002011242.1| GI16424 [Drosophila mojavensis]
gi|193907217|gb|EDW06084.1| GI16424 [Drosophila mojavensis]
Length = 397
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 327 FPGQSI 332
F G +
Sbjct: 346 FNGADL 351
>gi|125981363|ref|XP_001354688.1| GA17461 [Drosophila pseudoobscura pseudoobscura]
gi|195164937|ref|XP_002023302.1| GL20276 [Drosophila persimilis]
gi|54642999|gb|EAL31743.1| GA17461 [Drosophila pseudoobscura pseudoobscura]
gi|194105407|gb|EDW27450.1| GL20276 [Drosophila persimilis]
Length = 397
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALTIAKHGEIDYEAIVKLSDN 345
Query: 327 FPGQSI 332
F G +
Sbjct: 346 FNGADL 351
>gi|328909565|gb|AEB61450.1| 26S protease regulatory subunit 10B-like protein, partial [Equus
caballus]
Length = 182
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GE A+LIR+ + A D + C +F++++DA GR ++ T ++ + TLM + +
Sbjct: 2 GESARLIREMFNYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 55
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIG 304
Q+ G RV +I+ N TL L+R GR+++ R D +
Sbjct: 56 -----QMDGFDTLH---RVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK 107
Query: 305 VCSG-IFRTDNVPKEDIVKLVDTFPGQSI 332
+ +G I + + E IVKL D F G +
Sbjct: 108 IHAGPITKHGEIDYEAIVKLSDGFNGADL 136
>gi|331265521|ref|YP_004325151.1| ATPase AAA [Streptococcus oralis Uo5]
gi|326682193|emb|CBY99810.1| AAA family ATPase [Streptococcus oralis Uo5]
Length = 525
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 23/145 (15%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAG-AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
Q+ ++A + C L+I++++ G +G GG V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGATGGANDGGVSTRMVGQFLF----------- 364
Query: 257 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT-- 312
+ QE +V ++ T ND S L + L+R GR ++ ++ PT ++R + + F+
Sbjct: 365 ---WMQECKKQVFVVATANDVSMLPSELLRRGRFDELFFVDLPTADERKEILALYFKKYL 421
Query: 313 ----DNVPKEDIVKLVDTFPGQSID 333
+ ++I+++ D F G ++
Sbjct: 422 SLEFEGEFADNIIQISDGFTGADLE 446
>gi|326432763|gb|EGD78333.1| hypothetical protein PTSG_09399 [Salpingoeca sp. ATCC 50818]
Length = 864
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 27/150 (18%)
Query: 157 KVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAAD 205
K P +L ++G G GK+ C F + +N GE + +RQ + A
Sbjct: 605 KPPGVL-LYGPPGCGKTLLAKALANSCNANFISIKGPELMNKFVGESERAVRQLFTRA-- 661
Query: 206 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265
K C +F ++LDA R G + V+ ++VN L V+L G + EE
Sbjct: 662 --KTSSPCVVFFDELDALCPRRGDASSSRVSERIVNQLL---------VELDGFDSGEE- 709
Query: 266 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 295
++ +I N + ++R GR+EK +
Sbjct: 710 -KIFVIGATNRIDIIDPAMLRPGRLEKLVY 738
>gi|221060773|ref|XP_002261956.1| 26S proteasome regulatory subunit [Plasmodium knowlesi strain H]
gi|193811106|emb|CAQ41834.1| 26S proteasome regulatory subunit, putative [Plasmodium knowlesi
strain H]
Length = 393
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 31/191 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
V II+ N L LIR GR+++ P + RI + + + + ++ E
Sbjct: 274 LGNVKIIMATNRPDVLDPALIRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYE 333
Query: 319 DIVKLVDTFPG 329
+ +L D F G
Sbjct: 334 SVCRLCDGFNG 344
>gi|395534212|ref|XP_003775362.1| PREDICTED: LOW QUALITY PROTEIN: peroxisome assembly factor 2,
partial [Sarcophilus harrisii]
Length = 835
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 109/256 (42%), Gaps = 56/256 (21%)
Query: 165 WGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAADIIKKGKMC 213
+G G GK+ +C L F + IN G+ + IR+ + A + C
Sbjct: 598 YGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENIREVFSRA----RAAAPC 653
Query: 214 CLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270
+F ++LD+ A GR G + V +++V+ L +L G+++ +E V +
Sbjct: 654 IIFFDELDSLAPSRGRSGDSG--GVMDRVVSQLL---------AELDGLHSSQE---VFV 699
Query: 271 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR---IGVCSGIFRTDNV-PKEDIVKLVDT 326
I N L A L+R GR +K + EDR + + S I R + P ++V ++D
Sbjct: 700 IGATNRPDLLDAALLRPGRFDKLVFVGPSEDRASQLRILSAITRRFKLEPSVNLVSVLDR 759
Query: 327 FPGQ--SIDFF--------GALRARVYDDEVRKWISEVGIERIGKRLVNSKEG---PPTF 373
P Q D + AL+ RV D E G+E + + + E T
Sbjct: 760 CPTQLTGADLYSLCTDAMTAALKRRVQD-------IEDGLEPVNSTFLLTMEDLVQAATR 812
Query: 374 EQPKMTLDKLLEYGRM 389
QP ++ +LL Y R+
Sbjct: 813 LQPSVSEQELLRYKRI 828
>gi|296108730|ref|YP_003615679.1| ATPase AAA [methanocaldococcus infernus ME]
gi|295433544|gb|ADG12715.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME]
Length = 903
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 35/205 (17%)
Query: 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKL 195
K+ + V+ P + ++G G GK+ + V + G N + GE K
Sbjct: 474 AKDVFDKIGVRPPKGVLLFGPPGTGKTLLAKAVANEAGANFISVKGPEIFSKWVGESEKA 533
Query: 196 IRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 255
IR+ +++A ++ C +F +++DA A + G V +++VN L +
Sbjct: 534 IREIFKKA----RQNAPCIIFFDEIDAIAPKRGRDISSGVTDKVVNQIL---------TE 580
Query: 256 LPGMYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDRIGV------CSG 308
L G+ E P+ +++ + + P L+R GR+++ P +++ + G
Sbjct: 581 LDGL----EEPKDVVVIAATNRPDIIDPALLRPGRLDRIILVPVPDEKARLDIFKIHTRG 636
Query: 309 IFRTDNVPKEDIVKLVDTFPGQSID 333
+ ++V E++ K + + G I+
Sbjct: 637 MSLAEDVDLEELAKKTEGYTGADIE 661
>gi|237742898|ref|ZP_04573379.1| AAA family ATPase [Fusobacterium sp. 4_1_13]
gi|421144253|ref|ZP_15604169.1| ATPase AAA [Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
gi|229430546|gb|EEO40758.1| AAA family ATPase [Fusobacterium sp. 4_1_13]
gi|395489354|gb|EJG10193.1| ATPase AAA [Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
Length = 523
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Q+ ++A + C L+I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311
+ QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMR 417
>gi|215259685|gb|ACJ64334.1| 26S proteasome regulatory complex ATPase RPT4 [Culex tarsalis]
Length = 323
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 109 LYGPPGTGKTSLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 164
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 165 CIIFMDEIDALGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 214
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R + + + +G I + ++ E +VKL D
Sbjct: 215 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDN 274
Query: 327 FPGQSI 332
F G +
Sbjct: 275 FNGADL 280
>gi|294784210|ref|ZP_06749505.1| AAA ATPase, central region [Fusobacterium sp. 3_1_27]
gi|294488076|gb|EFG35427.1| AAA ATPase, central region [Fusobacterium sp. 3_1_27]
Length = 523
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Q+ ++A + C L+I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311
+ QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMR 417
>gi|1478008|gb|AAB36380.1| gibberellin A-binding protein, GABP=47 kda
ribulose-1,5-bisphosphate carboxylase/oxygenase activase
homolog [Oryza sativa=rice, leaves, Peptide, 56 aa]
Length = 56
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 20/20 (100%)
Query: 186 NGNAGEPAKLIRQRYREAAD 205
+GNAGEPAKLIRQRYREAAD
Sbjct: 24 SGNAGEPAKLIRQRYREAAD 43
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 60 EYDEEKQTSQDRWAGLAYDISD 81
E DE KQT QDRW GLAYDIS+
Sbjct: 2 ELDEGKQTDQDRWKGLAYDISE 23
>gi|378725904|gb|EHY52363.1| 26S protease subunit rpt4 [Exophiala dermatitidis NIH/UT8656]
Length = 393
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + +G+ N+ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVVTEGNIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|262067243|ref|ZP_06026855.1| ATPase, AAA family [Fusobacterium periodonticum ATCC 33693]
gi|291379036|gb|EFE86554.1| ATPase, AAA family [Fusobacterium periodonticum ATCC 33693]
Length = 523
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 22/144 (15%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Q+ ++A + C L+I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT--- 312
+ QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 364 --WLQESKKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTTEERYDIIKMYMRKYLS 421
Query: 313 ---DNVPKEDIVKLVDTFPGQSID 333
+ IV++ D F G ++
Sbjct: 422 LDFTGELADRIVEMTDGFTGADLE 445
>gi|421527143|ref|ZP_15973747.1| ATPase AAA [Fusobacterium nucleatum ChDC F128]
gi|402256577|gb|EJU07055.1| ATPase AAA [Fusobacterium nucleatum ChDC F128]
Length = 523
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Q+ ++A + C L+I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311
+ QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMR 417
>gi|34762147|ref|ZP_00143155.1| AAA family ATPase [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27888224|gb|EAA25282.1| AAA family ATPase [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 523
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Q+ ++A + C L+I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311
+ QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMR 417
>gi|260803780|ref|XP_002596767.1| hypothetical protein BRAFLDRAFT_114160 [Branchiostoma floridae]
gi|229282027|gb|EEN52779.1| hypothetical protein BRAFLDRAFT_114160 [Branchiostoma floridae]
Length = 392
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARLIREMFGYAKD----HQP 230
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DRLGKVKMIM 280
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ R D + + SG + + + E IVKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIQIDLPNEQARMDILKIHSGPMTKHGEIDYEAIVKLSDG 340
Query: 327 FPGQSI 332
F G +
Sbjct: 341 FNGADL 346
>gi|28175479|gb|AAH43044.1| Psmc6 protein [Mus musculus]
Length = 390
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 35/188 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 173 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 228
Query: 213 CCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270
C +F++++DA +GG ++ T ++ + TLM + + Q+ G RV +
Sbjct: 229 CIIFMDEIDA----IGGPRFSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKM 276
Query: 271 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLV 324
I+ N TL L+R GR+++ P + R+ + I + + E IVKL
Sbjct: 277 IMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLS 336
Query: 325 DTFPGQSI 332
D F G +
Sbjct: 337 DGFNGADL 344
>gi|289766162|ref|ZP_06525540.1| AAA family ATPase [Fusobacterium sp. D11]
gi|289717717|gb|EFD81729.1| AAA family ATPase [Fusobacterium sp. D11]
Length = 523
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Q+ ++A + C L+I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311
+ QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMR 417
>gi|422340150|ref|ZP_16421104.1| AAA ATPase, central region [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370090|gb|EHG17478.1| AAA ATPase, central region [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 523
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Q+ ++A + C L+I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311
+ QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMR 417
>gi|256846870|ref|ZP_05552324.1| AAA family ATPase [Fusobacterium sp. 3_1_36A2]
gi|256717668|gb|EEU31227.1| AAA family ATPase [Fusobacterium sp. 3_1_36A2]
Length = 523
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Q+ ++A + C L+I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311
+ QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMR 417
>gi|24745880|dbj|BAC23035.1| 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum]
gi|76160929|gb|ABA40428.1| 26S proteasome AAA-ATPase subunit RPT4a-like protein [Solanum
tuberosum]
Length = 398
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 31/191 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAR 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 319 DIVKLVDTFPG 329
+KL + F G
Sbjct: 335 AAIKLAEGFNG 345
>gi|254302208|ref|ZP_04969566.1| AAA family ATPase [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
gi|148322400|gb|EDK87650.1| AAA family ATPase [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
Length = 523
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Q+ ++A + C L+I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311
+ QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMR 417
>gi|358466313|ref|ZP_09176148.1| hypothetical protein HMPREF9093_00618 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069173|gb|EHI79116.1| hypothetical protein HMPREF9093_00618 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 523
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 32/149 (21%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Q+ ++A + C L+I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV 315
+ QE +V ++ T ND S L + L+R GR ++ ++ PT E+R
Sbjct: 364 --WLQESKKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTTEER------------- 408
Query: 316 PKEDIVKLVDTFPGQSIDFFGALRARVYD 344
DI+K+ S+DF G L R+ +
Sbjct: 409 --HDIIKMY-MRKYLSLDFTGELADRIVE 434
>gi|330802418|ref|XP_003289214.1| hypothetical protein DICPUDRAFT_16006 [Dictyostelium purpureum]
gi|325080701|gb|EGC34245.1| hypothetical protein DICPUDRAFT_16006 [Dictyostelium purpureum]
Length = 732
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 25/161 (15%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAADIIKKG 210
L +WG G GKS + + M IN + GE ++IR+ ++ A +
Sbjct: 519 LLLWGPSGCGKSLMVKAIATSMSINFISIKGSDIYSKWLGESERIIRELFKSA----RLS 574
Query: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270
C +F +++D+ A G + + + L + + +Q+ ++ +
Sbjct: 575 SPCIMFFDEIDSLALSRGDSNDSSEDGGTGKRILSQLLNEMDGIQVKS--------QIFL 626
Query: 271 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGI 309
I N ++ + L+R GR+E PT EDRI + + I
Sbjct: 627 IGCTNTIDSIDSALLRPGRLETLIKVDLPTLEDRIDILNVI 667
>gi|366989615|ref|XP_003674575.1| hypothetical protein NCAS_0B01150 [Naumovozyma castellii CBS 4309]
gi|342300439|emb|CCC68199.1| hypothetical protein NCAS_0B01150 [Naumovozyma castellii CBS 4309]
Length = 426
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 201 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 259
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 260 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLS-----QMDGFDNLGQ 309
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
II+ N TL L+R GR+++ P
Sbjct: 310 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 339
>gi|156842059|ref|XP_001644399.1| hypothetical protein Kpol_1064p22 [Vanderwaltozyma polyspora DSM
70294]
gi|156115041|gb|EDO16541.1| hypothetical protein Kpol_1064p22 [Vanderwaltozyma polyspora DSM
70294]
Length = 432
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 207 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 265
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 266 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 315
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
II+ N TL L+R GR+++ P
Sbjct: 316 T---KIIMATNRPDTLDPALLRPGRLDRKIEIP 345
>gi|449548337|gb|EMD39304.1| 26S proteasome regulatory complex ATPase RPT4 [Ceriporiopsis
subvermispora B]
Length = 399
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V A + N GE A+++R+ + A D +
Sbjct: 183 LYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYARD----HEP 238
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + R II+
Sbjct: 239 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKIIM 288
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + + ++ + E IVKL D
Sbjct: 289 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKSGEIDYEAIVKLSDG 348
Query: 327 FPGQSI 332
F G +
Sbjct: 349 FNGADL 354
>gi|389586002|dbj|GAB68731.1| 26S proteasome regulatory subunit [Plasmodium cynomolgi strain B]
Length = 393
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
V II+ N L LIR GR+++ P + RI + + + + ++ E
Sbjct: 274 LGNVKIIMATNRPDVLDPALIRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYE 333
Query: 319 DIVKLVDTFPGQSI 332
+ +L D F G +
Sbjct: 334 SVCRLCDGFNGADL 347
>gi|323307308|gb|EGA60588.1| Rpt4p [Saccharomyces cerevisiae FostersO]
Length = 374
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|376316134|emb|CCF99534.1| conserved hypothetical protein [uncultured Flavobacteriia
bacterium]
Length = 388
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 439 EGCTDPAAANYDPTARSDDGSCNYQF 464
EGCTDP A NY+ A++DDGSC Y +
Sbjct: 24 EGCTDPLADNYNEDAKTDDGSCEYSY 49
>gi|169849566|ref|XP_001831486.1| ATPase [Coprinopsis cinerea okayama7#130]
gi|116507438|gb|EAU90333.1| ATPase [Coprinopsis cinerea okayama7#130]
Length = 396
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+++R+ + A
Sbjct: 172 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYA- 230
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 231 ---REHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 277
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKE 318
R +I+ N TL L+R GR+++ P R + + + +G + + + E
Sbjct: 278 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHTGPVNKNGEIDYE 337
Query: 319 DIVKLVDTFPGQSI 332
+VKL D F G +
Sbjct: 338 AVVKLSDGFNGADL 351
>gi|448098649|ref|XP_004198973.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
gi|359380395|emb|CCE82636.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
Length = 415
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 115/297 (38%), Gaps = 69/297 (23%)
Query: 90 KGMVDTLFQAPMESGTHYAV----MSSYDYISQGLRQYSLD-NTLDGLYIAPAFMDKVVV 144
K + D F SG Y V D + G+R SLD TL + I P +D +V
Sbjct: 88 KSLDDERFIVKASSGPRYIVGCRNTIPKDKLKNGIR-VSLDMTTLTIMRILPREVDPLVY 146
Query: 145 HIT----------------------KNFLNLP----------NVKVPLILGIWGGKGQGK 172
++T + + LP +K P + ++G G GK
Sbjct: 147 NMTTFKPGEISFNGIGGLTEQIRELREVIELPLKNPELFTRIGIKSPKGVLLYGPPGTGK 206
Query: 173 SFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221
+ + V A +G N GE A+LIR+ + A K+ + C +F++++D
Sbjct: 207 TLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA----KEHEPCIIFMDEID 262
Query: 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 281
A GR ++ T ++ + TLM + + G + +I+ N TL
Sbjct: 263 AIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------QTKVIMATNRPDTLD 312
Query: 282 APLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 332
L+R GR+++ P R+ V + I + E VK+ D F G I
Sbjct: 313 PALMRAGRLDRKIEIALPNEAGRLDVFKIHTAKIAKKGEFDFEAAVKMSDGFNGADI 369
>gi|365762926|gb|EHN04458.1| Rpt4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 379
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|195398707|ref|XP_002057962.1| GJ15827 [Drosophila virilis]
gi|194150386|gb|EDW66070.1| GJ15827 [Drosophila virilis]
Length = 397
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEMDYEAIVKLSDN 345
Query: 327 FPGQSI 332
F G +
Sbjct: 346 FNGADL 351
>gi|149239116|ref|XP_001525434.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239]
gi|146450927|gb|EDK45183.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239]
Length = 434
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 209 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 267
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 268 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 316
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 317 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIP 347
>gi|365153042|ref|ZP_09349486.1| ATP-dependent metallopeptidase HflB [Campylobacter sp. 10_1_50]
gi|363652358|gb|EHL91398.1| ATP-dependent metallopeptidase HflB [Campylobacter sp. 10_1_50]
Length = 558
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 32/192 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI-----NGNA------GEPAKLIRQRYREAA 204
+K+P + + G G GK+ + V + + NG + G AK +R+ + A
Sbjct: 190 IKMPKGVLMIGPPGVGKTLVAKAVAGEANVPFFYQNGASFVQIYVGMGAKRVRELFSRA- 248
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K +FI+++DA GGT N ATL N L M E+
Sbjct: 249 ---KSYAPSIIFIDEIDAVGKSRGGT-----RNDEREATL--------NQLLTEMDGFED 292
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDN--VPKEDI 320
N V +I N + L+R GR ++ F P DR+ + + R N V EDI
Sbjct: 293 NSGVIVIAATNRIEMIDEALLRSGRFDRRIFLSMPDFNDRVAILNTYLRDKNCEVSAEDI 352
Query: 321 VKLVDTFPGQSI 332
++ F G ++
Sbjct: 353 ARMSVGFSGAAL 364
>gi|343425001|emb|CBQ68538.1| probable RPT4-26S proteasome regulatory subunit [Sporisorium
reilianum SRZ2]
Length = 408
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 183 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 241
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 242 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 290
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 291 --KTKVIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTKPVAKKEELDYE 348
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 349 AIVKLSDGFNGADL 362
>gi|449664501|ref|XP_002169843.2| PREDICTED: nuclear valosin-containing protein-like [Hydra
magnipapillata]
Length = 400
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 30/187 (16%)
Query: 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEP 192
VH F +L V P IL + G G GK+ + + + GIN + GE
Sbjct: 101 VHNPVEFESLGLVTPPGIL-LAGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGES 159
Query: 193 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 252
K +RQ ++ A K C +F +++DA R T + ++++VN L
Sbjct: 160 EKAVRQVFQRA----KNSAPCVIFFDEIDALCPRRSETGDSSASSRVVNQLL-------- 207
Query: 253 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 310
++ G+ E V I+ N L A ++R GR++K + P DR + + I
Sbjct: 208 -TEMDGL---ETRKNVFIMGATNRPDILDAAILRPGRLDKLLYVGLPNPSDRKKILNTIT 263
Query: 311 RTDNVPK 317
PK
Sbjct: 264 MNGTKPK 270
>gi|157164271|ref|YP_001466756.1| M41 family peptidase [Campylobacter concisus 13826]
gi|157101415|gb|EAT97495.2| putative Cell division protease FtsH homolog [Campylobacter
concisus 13826]
Length = 558
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 32/192 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI-----NGNA------GEPAKLIRQRYREAA 204
+K+P + + G G GK+ + V + + NG + G AK +R+ + A
Sbjct: 190 IKMPKGVLMIGPPGVGKTLVAKAVAGEANVPFFYQNGASFVQIYVGMGAKRVRELFSRA- 248
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K +FI+++DA GGT N ATL N L M E+
Sbjct: 249 ---KSYAPSIIFIDEIDAVGKSRGGT-----RNDEREATL--------NQLLTEMDGFED 292
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDN--VPKEDI 320
N V +I N + L+R GR ++ F P DR+ + + R N V EDI
Sbjct: 293 NSGVIVIAATNRIEMIDEALLRSGRFDRRIFLSMPDFNDRVAILNTYLRDKNCEVSAEDI 352
Query: 321 VKLVDTFPGQSI 332
++ F G ++
Sbjct: 353 ARMSVGFSGAAL 364
>gi|354545862|emb|CCE42591.1| hypothetical protein CPAR2_202340 [Candida parapsilosis]
Length = 434
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 209 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 267
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 268 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 316
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 317 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIP 347
>gi|289540940|gb|ADD09611.1| 26S proteasome AAA-ATPase subunit RPT4a [Trifolium repens]
Length = 439
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
Query: 185 INGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATL 244
I+ GE ++LIR+ + A D + C +F++++DA GR ++ T ++ + TL
Sbjct: 223 IDKYIGESSRLIREMFGYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTL 276
Query: 245 MNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 302
M + + QL G ++ +V II+ N L L+R GR+++ P + R
Sbjct: 277 MELLN-----QLDGF---DQLGKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 328
Query: 303 IGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 332
+ + +GI + + E +VKL + F G +
Sbjct: 329 MEILKIHAAGIAKLGEIDYEAVVKLAEGFNGADL 362
>gi|416115867|ref|ZP_11594218.1| Cell division protein FtsH [Campylobacter concisus UNSWCD]
gi|384577650|gb|EIF06929.1| Cell division protein FtsH [Campylobacter concisus UNSWCD]
Length = 550
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 32/192 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI-----NGNA------GEPAKLIRQRYREAA 204
+K+P + + G G GK+ + V + + NG + G AK +R+ + A
Sbjct: 182 IKMPKGVLMIGPPGVGKTLVAKAVAGEANVPFFYQNGASFVQIYVGMGAKRVRELFSRA- 240
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K +FI+++DA GGT N ATL N L M E+
Sbjct: 241 ---KSYAPSIIFIDEIDAVGKSRGGT-----RNDEREATL--------NQLLTEMDGFED 284
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDN--VPKEDI 320
N V +I N + L+R GR ++ F P DR+ + + R N V EDI
Sbjct: 285 NSGVIVIAATNRIEMIDEALLRSGRFDRRIFLSMPDFNDRVAILNTYLRDKNCEVSAEDI 344
Query: 321 VKLVDTFPGQSI 332
++ F G ++
Sbjct: 345 ARMSVGFSGAAL 356
>gi|448102530|ref|XP_004199824.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
gi|359381246|emb|CCE81705.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
Length = 415
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 115/297 (38%), Gaps = 69/297 (23%)
Query: 90 KGMVDTLFQAPMESGTHYAV----MSSYDYISQGLRQYSLD-NTLDGLYIAPAFMDKVVV 144
K + D F SG Y V D + G+R SLD TL + I P +D +V
Sbjct: 88 KSLDDERFIVKASSGPRYIVGCRNTIPKDKLKNGVR-VSLDMTTLTIMRILPREVDPLVY 146
Query: 145 HIT----------------------KNFLNLP----------NVKVPLILGIWGGKGQGK 172
++T + + LP +K P + ++G G GK
Sbjct: 147 NMTTFKPGEISFNGIGGLTEQIRELREVIELPLKNPELFTRIGIKAPKGVLLYGPPGTGK 206
Query: 173 SFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221
+ + V A +G N GE A+LIR+ + A K+ + C +F++++D
Sbjct: 207 TLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA----KEHEPCIIFMDEID 262
Query: 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 281
A GR ++ T ++ + TLM + + G + +I+ N TL
Sbjct: 263 AIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------QTKVIMATNRPDTLD 312
Query: 282 APLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 332
L+R GR+++ P R+ + + I + E VK+ D F G I
Sbjct: 313 PALMRAGRLDRKIEIALPNETGRLDIFKIHTAKIAKKGEFDFEAAVKMSDGFNGADI 369
>gi|159116259|ref|XP_001708351.1| 26S protease regulatory subunit 7 [Giardia lamblia ATCC 50803]
gi|157436462|gb|EDO80677.1| 26S protease regulatory subunit 7 [Giardia lamblia ATCC 50803]
Length = 401
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 28/227 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYREAADII-------K 208
+K P + ++G G GKS C+ + +GI+ ++LIR+ E+A ++ K
Sbjct: 169 IKPPKSILLYGAPGTGKSLICKCLANSLGISYIKCVGSQLIRKYIGESARLVRDLFAYAK 228
Query: 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268
K C L I+++DA A + + T N++ V+ L+ + ++ G +E+ +
Sbjct: 229 LKKPCLLMIDEVDAIATKR--SDDGTHNDREVDRALLQLL-----TEIDGFTGLDES--I 279
Query: 269 PIIVTGNDFSTLYAPLIRDGR----MEKFYWAPT-REDRIGVCS-GIFRTDNVPKEDIVK 322
I+ N L L+R GR +E PT R + + + S G+ ++V IVK
Sbjct: 280 KIVFCTNRPEALDPALMRPGRCDVKIEIRLPDPTGRYEILKIHSKGLSLGEDVDFAGIVK 339
Query: 323 LVDTFPGQSIDF------FGALRARVYDDEVRKWISEVGIERIGKRL 363
D F G + GALRA + ++ V + R K +
Sbjct: 340 STDGFNGADLRNVITEAGLGALRAERGEIHQEDLLAAVAVIRSNKSI 386
>gi|403216832|emb|CCK71328.1| hypothetical protein KNAG_0G02720 [Kazachstania naganishii CBS
8797]
Length = 444
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 35/196 (17%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 219 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 277
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 278 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLS-----QMDGFDNLGQ 327
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK----- 317
II+ N TL L+R GR+++ P R+ + T NV K
Sbjct: 328 ---TKIIMATNRPDTLDPALLRPGRLDRKIEINLPNEAGRLEIFK--IHTANVKKHGEFD 382
Query: 318 -EDIVKLVDTFPGQSI 332
+ VK+ D F G I
Sbjct: 383 FDAAVKMSDGFNGADI 398
>gi|15920578|ref|NP_376247.1| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7]
gi|342306167|dbj|BAK54256.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 747
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 32/202 (15%)
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIR 197
N + P + ++G G GK+ + V + G N A GE K IR
Sbjct: 478 ELFNKSGITPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIR 537
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQL 256
+ +R+A ++ +F +++DA A G TT V ++VN L + P N
Sbjct: 538 EIFRKA----RQAAPTIIFFDEIDAIAPMRGLTTDSGVTERIVNQLLAEMDGIVPLN--- 590
Query: 257 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 316
+V +I N L L+R GR ++ + P + R T NVP
Sbjct: 591 ----------KVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDKRARAEILKVHTRNVP 640
Query: 317 -KEDIVKLVDTFPGQSIDFFGA 337
EDI +D ++ + GA
Sbjct: 641 LAEDIT--LDELAEKTEGYTGA 660
>gi|443897510|dbj|GAC74850.1| 26S proteasome regulatory complex [Pseudozyma antarctica T-34]
Length = 408
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 183 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 241
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 242 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 290
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 291 --KTKVIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTKPVAKKEELDYE 348
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 349 AIVKLSDGFNGADL 362
>gi|320164654|gb|EFW41553.1| proteasome 26S subunit [Capsaspora owczarzaki ATCC 30864]
Length = 391
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + ++ GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASNIEASFLKVVSSSIVDKYIGESARLIREMFGYAR 225
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + + G
Sbjct: 226 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCS-GIFRTDNVPKE 318
+V +I+ N TL L+R GR+++ P R D + + S I + + +
Sbjct: 274 --KVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDILKIHSAAITKHGEIDWD 331
Query: 319 DIVKLVDTFPGQSI 332
++KL D F G +
Sbjct: 332 AVIKLSDGFNGADL 345
>gi|195447510|ref|XP_002071246.1| GK25687 [Drosophila willistoni]
gi|194167331|gb|EDW82232.1| GK25687 [Drosophila willistoni]
Length = 397
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALIIAKHGEIDYEAIVKLSDN 345
Query: 327 FPGQSI 332
F G +
Sbjct: 346 FNGADL 351
>gi|242023130|ref|XP_002431989.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517340|gb|EEB19251.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 942
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 30/189 (15%)
Query: 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEP 192
V K F L + P + I G G GK+ + V + GIN + GE
Sbjct: 684 VKYRKQFEQL-GLTAPAGILICGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGES 742
Query: 193 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 252
+ +R+ ++ A + C +F ++LD+ R T + ++VN L
Sbjct: 743 ERAVRRCFQRA----RSSAPCVIFFDELDSLCPRRSDTPESGATMRVVNQLL-------- 790
Query: 253 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 310
++ G+ +++E V I+ N + ++R GR++K + P EDR+ + +
Sbjct: 791 -TEMDGIEDRKE---VYIMAATNRPDIIDPAVLRPGRLDKILYVGLPQEEDRVDILRAVT 846
Query: 311 RTDNVPKED 319
+ PK D
Sbjct: 847 KNGTRPKLD 855
>gi|242093540|ref|XP_002437260.1| hypothetical protein SORBIDRAFT_10g023770 [Sorghum bicolor]
gi|241915483|gb|EER88627.1| hypothetical protein SORBIDRAFT_10g023770 [Sorghum bicolor]
Length = 398
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 227
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 228 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ V GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQGRMEVLKIHAVGIAKHGEIDYE 334
Query: 319 DIVKLVDTFPGQSI 332
++ L + F G +
Sbjct: 335 AVINLAEGFNGADL 348
>gi|167520500|ref|XP_001744589.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776920|gb|EDQ90538.1| predicted protein [Monosiga brevicollis MX1]
Length = 388
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 163 IKPPKGCLLYGPPGTGKTLLARAVASNVDANFLKVVSSAIVDKYIGESARLIREMFGYAR 222
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + + G
Sbjct: 223 D----HEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG------ 270
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N TL L+R GR+++ P + R+ + I + ++ E
Sbjct: 271 --KVKMIMATNRPDTLDPALMRPGRLDRKIEIGLPNEQARLDILKIHAQPIAKAGDIDYE 328
Query: 319 DIVKLVDTFPGQSI 332
+VKL D F G +
Sbjct: 329 AVVKLSDGFNGADL 342
>gi|84996219|ref|XP_952831.1| 26S proteasome ATPase subunit [Theileria annulata strain Ankara]
gi|65303829|emb|CAI76206.1| 26S proteasome ATPase subunit, putative [Theileria annulata]
Length = 448
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 33/239 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + +G N GE AK+IR+ + A
Sbjct: 223 IKPPKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIREMFGYAK 282
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +FI+++DA GR +Q T ++ + TLM + L G +E
Sbjct: 283 D----NQPCIIFIDEIDAIGGRR--FSQGTSADREIQRTLMELL-----THLDGF---DE 328
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVP----KE 318
+V II+ N L L+R GR+++ P + RI + + N+
Sbjct: 329 LGQVKIIMATNRPDVLDPALLRPGRIDRKIEIPLPNETARIEILKIHTQKLNIQYPINYN 388
Query: 319 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK--EGPPTFEQ 375
+I KL D F G + +R +I E + ++L +K EG ++EQ
Sbjct: 389 NICKLCDGFNGADMRNICTEAGINAIRNMRDYIIEEDFFKAARKLTENKKLEGTLSYEQ 447
>gi|336274034|ref|XP_003351771.1| hypothetical protein SMAC_00315 [Sordaria macrospora k-hell]
gi|380096051|emb|CCC06098.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 368
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 143 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 201
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 202 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 250
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + SG+ ++ E
Sbjct: 251 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVVIEGDIDYE 308
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 309 SVVKMSDGLNGADL 322
>gi|383856518|ref|XP_003703755.1| PREDICTED: 26S protease regulatory subunit 10B-like [Megachile
rotundata]
Length = 393
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPISKHGEIDYEAVVKLSDG 341
Query: 327 FPGQSI 332
F G +
Sbjct: 342 FNGADL 347
>gi|448525868|ref|XP_003869223.1| Rpt4 26S proteasome regulatory subunit [Candida orthopsilosis Co
90-125]
gi|380353576|emb|CCG23087.1| Rpt4 26S proteasome regulatory subunit [Candida orthopsilosis]
Length = 435
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 210 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 268
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 269 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 317
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 318 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIP 348
>gi|255721295|ref|XP_002545582.1| 26S protease subunit RPT4 [Candida tropicalis MYA-3404]
gi|240136071|gb|EER35624.1| 26S protease subunit RPT4 [Candida tropicalis MYA-3404]
Length = 433
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 208 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 266
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 267 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 315
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P R+ + S + + E
Sbjct: 316 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFE 373
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 374 AAVKMSDGFNGADI 387
>gi|156547510|ref|XP_001603936.1| PREDICTED: 26S protease regulatory subunit 10B [Nasonia
vitripennis]
Length = 393
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHANPIAKHGEIDYEAVVKLSDG 341
Query: 327 FPGQSI 332
F G +
Sbjct: 342 FNGADL 347
>gi|238879861|gb|EEQ43499.1| 26S protease subunit RPT4 [Candida albicans WO-1]
Length = 428
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 203 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 261
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 262 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 310
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P R+ + S + + E
Sbjct: 311 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFE 368
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 369 AAVKMSDGFNGADI 382
>gi|315045474|ref|XP_003172112.1| 26S protease regulatory subunit S10B [Arthroderma gypseum CBS
118893]
gi|311342498|gb|EFR01701.1| 26S protease regulatory subunit S10B [Arthroderma gypseum CBS
118893]
Length = 393
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ V SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHASGVSMEGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 334 TIVKMSDGLNGADL 347
>gi|296805197|ref|XP_002843423.1| 26S protease regulatory subunit S10B [Arthroderma otae CBS 113480]
gi|238844725|gb|EEQ34387.1| 26S protease regulatory subunit S10B [Arthroderma otae CBS 113480]
Length = 393
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ V SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHASGVSMEGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 334 TIVKMSDGLNGADL 347
>gi|68076831|ref|XP_680335.1| 26S proteasome regulatory subunit 7 [Plasmodium berghei strain
ANKA]
gi|56501247|emb|CAH95167.1| 26S proteasome regulatory subunit 7, putative [Plasmodium berghei]
Length = 420
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 189 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 248
GE A+L+R+ ++ A K K C LFI+++DA G G + + + V T++ I
Sbjct: 237 VGEGARLVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIV 290
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
+ QL G N+ + +I+ N TL + L+R GR+++
Sbjct: 291 N-----QLDGFDNR---GNIKVIMATNRPDTLDSALVRPGRIDR 326
>gi|302501592|ref|XP_003012788.1| hypothetical protein ARB_01039 [Arthroderma benhamiae CBS 112371]
gi|327304381|ref|XP_003236882.1| 26S protease regulatory subunit S10B [Trichophyton rubrum CBS
118892]
gi|291176348|gb|EFE32148.1| hypothetical protein ARB_01039 [Arthroderma benhamiae CBS 112371]
gi|326459880|gb|EGD85333.1| 26S protease regulatory subunit S10B [Trichophyton rubrum CBS
118892]
gi|326472718|gb|EGD96727.1| 26S proteasome regulatory subunit [Trichophyton tonsurans CBS
112818]
gi|326482035|gb|EGE06045.1| 26S protease regulatory subunit S10B [Trichophyton equinum CBS
127.97]
Length = 393
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ V SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHASGVSMEGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 334 TIVKMSDGLNGADL 347
>gi|443924537|gb|ELU43537.1| ATPase [Rhizoctonia solani AG-1 IA]
Length = 442
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V A + N GE A+L+R+ + A K+ +
Sbjct: 172 LYGPPGTGKTLLARAVAATLSTNFLKVVSSAIVDKYIGESARLVREMFGYA----KEHEP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G + +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------KTKLIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + + ++ + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKSGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|255713900|ref|XP_002553232.1| KLTH0D11990p [Lachancea thermotolerans]
gi|238934612|emb|CAR22794.1| KLTH0D11990p [Lachancea thermotolerans CBS 6340]
Length = 433
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 25/148 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 208 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 266
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 267 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 316
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
II+ N TL L+R GR+++
Sbjct: 317 ---TKIIMATNRPDTLDPALLRPGRLDR 341
>gi|68476913|ref|XP_717434.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
gi|68477104|ref|XP_717345.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
gi|46439054|gb|EAK98376.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
gi|46439147|gb|EAK98468.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
Length = 428
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 203 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 261
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 262 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 310
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P R+ + S + + E
Sbjct: 311 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFE 368
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 369 AAVKMSDGFNGADI 382
>gi|71987372|ref|NP_001022114.1| Protein RPT-4, isoform b [Caenorhabditis elegans]
gi|373218667|emb|CCD62358.1| Protein RPT-4, isoform b [Caenorhabditis elegans]
Length = 398
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 40/218 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A++IR+ + A D +
Sbjct: 181 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 236
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 237 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 286
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 346
Query: 327 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 355
F + F A R V D++ K + +VG
Sbjct: 347 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 384
>gi|71987364|ref|NP_001022113.1| Protein RPT-4, isoform a [Caenorhabditis elegans]
gi|21264496|sp|O17071.2|PRS10_CAEEL RecName: Full=Probable 26S protease regulatory subunit 10B;
AltName: Full=26S proteasome AAA-ATPase subunit rpt-4;
AltName: Full=Proteasome regulatory particle ATPase-like
protein 4
gi|373218666|emb|CCD62357.1| Protein RPT-4, isoform a [Caenorhabditis elegans]
Length = 406
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 40/218 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A++IR+ + A D +
Sbjct: 189 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 244
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 245 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 294
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 295 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 354
Query: 327 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 355
F + F A R V D++ K + +VG
Sbjct: 355 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 392
>gi|124512870|ref|XP_001349791.1| 26S proteasome regulatory subunit, putative [Plasmodium falciparum
3D7]
gi|23615208|emb|CAD52198.1| 26S proteasome regulatory subunit, putative [Plasmodium falciparum
3D7]
Length = 393
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
V II+ N L L+R GR+++ P + RI + + + + ++ E
Sbjct: 274 LGNVKIIMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYE 333
Query: 319 DIVKLVDTFPGQSI 332
+ +L D F G +
Sbjct: 334 SVCRLCDGFNGADL 347
>gi|367020878|ref|XP_003659724.1| hypothetical protein MYCTH_2076503 [Myceliophthora thermophila ATCC
42464]
gi|347006991|gb|AEO54479.1| hypothetical protein MYCTH_2076503 [Myceliophthora thermophila ATCC
42464]
Length = 391
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + +G+ + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVAKEGEIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 332 SIVKMSDGLNGADL 345
>gi|164424303|ref|XP_958860.2| hypothetical protein NCU07367 [Neurospora crassa OR74A]
gi|157070458|gb|EAA29624.2| hypothetical protein NCU07367 [Neurospora crassa OR74A]
gi|336464029|gb|EGO52269.1| hypothetical protein NEUTE1DRAFT_118706 [Neurospora tetrasperma
FGSC 2508]
gi|350296111|gb|EGZ77088.1| 26S proteasome subunit P45 [Neurospora tetrasperma FGSC 2509]
Length = 390
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + SG+ ++ E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVVIEGDIDYE 330
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|336368315|gb|EGN96658.1| hypothetical protein SERLA73DRAFT_75535 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381126|gb|EGO22278.1| hypothetical protein SERLADRAFT_409838 [Serpula lacrymans var.
lacrymans S7.9]
Length = 399
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+++R+ + A
Sbjct: 175 IKAPKGVLLYGPPGTGKTLLARAVAATLHTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG------ 282
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 283 --KTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKGGEIDYE 340
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 341 AIVKLSDAFNGADL 354
>gi|156102603|ref|XP_001616994.1| 26S proteasome regulatory subunit [Plasmodium vivax Sal-1]
gi|148805868|gb|EDL47267.1| 26S proteasome regulatory subunit, putative [Plasmodium vivax]
Length = 393
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 31/191 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
V II+ N L LIR GR+++ P + RI + + + + + E
Sbjct: 274 LGNVKIIMATNRPDVLDPALIRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGEIDYE 333
Query: 319 DIVKLVDTFPG 329
+ +L D F G
Sbjct: 334 SVCRLCDGFNG 344
>gi|308470578|ref|XP_003097522.1| CRE-RPT-4 protein [Caenorhabditis remanei]
gi|308240039|gb|EFO83991.1| CRE-RPT-4 protein [Caenorhabditis remanei]
Length = 492
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 40/218 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A++IR+ + A D +
Sbjct: 275 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 330
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 331 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 380
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 381 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 440
Query: 327 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 355
F + F A R V D++ K + +VG
Sbjct: 441 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 478
>gi|452821838|gb|EME28864.1| AAA-type ATPase [Galdieria sulphuraria]
Length = 406
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + M ++ GE A++IR+ ++ A
Sbjct: 176 IKTPKGVLLYGPPGTGKTLLARAIASNMDCSFLKVVASAIVDKYIGESARIIREMFQYA- 234
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 235 ---KAHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 281
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+V +++ N L L+R GR+++ P
Sbjct: 282 IGKVKLVMATNRPDVLDPALLRPGRLDRKIEIP 314
>gi|386001528|ref|YP_005919827.1| proteasome-activating nucleotidase [Methanosaeta harundinacea 6Ac]
gi|357209584|gb|AET64204.1| Proteasome-activating nucleotidase [Methanosaeta harundinacea 6Ac]
Length = 406
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 248
GE A+++R+ + ++ + +F+++LDA G+ RM G T ++ V TLM +
Sbjct: 221 GEGARMVRELF----ELAQNKAPAIIFVDELDAIGSRRMDGATS---GDREVQRTLMQL- 272
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 306
L M + V +I N L L+R GR ++ + P+RE R +
Sbjct: 273 -------LAEMDGFDPRGEVKLIAATNRLDMLDPALLRPGRFDRLIYVPLPSRESRYSIL 325
Query: 307 SGIFRTDNV-PKEDIVKLVDTFPGQS 331
S + N+ P D+ ++ D G S
Sbjct: 326 SIHTASMNLHPDVDLRRIADGAEGAS 351
>gi|70941981|ref|XP_741212.1| 26S proteasome regulatory subunit 7 [Plasmodium chabaudi chabaudi]
gi|56519448|emb|CAH83988.1| 26S proteasome regulatory subunit 7, putative [Plasmodium chabaudi
chabaudi]
Length = 295
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 189 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 248
GE A+L+R+ ++ A K K C LFI+++DA G G + + + V T++ I
Sbjct: 112 VGEGARLVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIV 165
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
+ QL G N+ + +I+ N TL + L+R GR+++
Sbjct: 166 N-----QLDGFDNRGN---IKVIMATNRPDTLDSALVRPGRIDR 201
>gi|260791609|ref|XP_002590821.1| hypothetical protein BRAFLDRAFT_90046 [Branchiostoma floridae]
gi|229276018|gb|EEN46832.1| hypothetical protein BRAFLDRAFT_90046 [Branchiostoma floridae]
Length = 753
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 89/185 (48%), Gaps = 28/185 (15%)
Query: 159 PLILGIWGGKGQGKSFQCELVFAK-----MGING------NAGEPAKLIRQRYREAADII 207
P+ + + G G GK+ + V A+ + +NG + GE + +R+ ++EA I
Sbjct: 229 PMGILLLGPPGVGKTSLVKTVAAECHAHLVALNGPDVFGPHPGESEENLRRVFQEAVTIS 288
Query: 208 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267
++G C LFI++LDA + GG+ + + N+MV A ++ + D Q R
Sbjct: 289 EEGP-CVLFIDELDALCPKRGGSGK-SQENRMV-AQMLTLMD-----------GQAGRGR 334
Query: 268 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKE-DIVKLV 324
+ ++ N + + L R GR +K P +++R + + R ++ ++ D+ +L
Sbjct: 335 LVVVAATNRPNAIDPALRRPGRFDKEVHVGVPNQQEREEILRVVSRDMSLAEDVDLNRLA 394
Query: 325 DTFPG 329
+ PG
Sbjct: 395 EMTPG 399
>gi|66359630|ref|XP_626993.1| 26S proteasome regulatory subunit S10b like AAA+ ATpase
[Cryptosporidium parvum Iowa II]
gi|46228795|gb|EAK89665.1| 26S proteasome regulatory subunit S10b like AAA+ ATpase
[Cryptosporidium parvum Iowa II]
Length = 406
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 31/191 (16%)
Query: 156 VKVPLILGIWGGKGQGK---------SFQCEL--VFAKMGINGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK S C V A ++ GE A++IR+ + A
Sbjct: 181 IKTPKGVLLYGPPGTGKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIREMFGYAK 240
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA G+ +Q T ++ + TLM + + QL G +E
Sbjct: 241 D----HQPCVIFMDEIDAIGGKR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 286
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKE 318
V II+ N L L+R GR+++ P R+ + S + + + +
Sbjct: 287 LGAVKIIMATNRPDVLDPALLRPGRLDRKVEIPLPNETSRVEILKIHSSKLAKQGEIDFD 346
Query: 319 DIVKLVDTFPG 329
I KL D F G
Sbjct: 347 AICKLCDGFNG 357
>gi|403224252|dbj|BAM42382.1| 26S proteasome ATPase subunit [Theileria orientalis strain
Shintoku]
Length = 487
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 33/239 (13%)
Query: 156 VKVPLILGIWGGKGQGKSF---------QCEL--VFAKMGINGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ +C V A ++ GE AK+IR+ + A
Sbjct: 262 IKAPKGVLLYGPPGTGKTLLARALANDIECNFLKVVASAVVDKYIGESAKIIREMFGYA- 320
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR +Q T ++ + TLM + L G +E
Sbjct: 321 ---KEHQPCIIFMDEVDAIGGRR--FSQGTSADREIQRTLMELL-----THLDGF---DE 367
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+V II+ N L L+R GR+++ P + RI + + + +
Sbjct: 368 LGQVKIIMATNRPDVLDPALLRPGRIDRKIEIPLPNEAARIEILKIHAKPLNKQGEINYN 427
Query: 319 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK--EGPPTFEQ 375
I KL D F G + +R ++ E + ++L +K EG +EQ
Sbjct: 428 AICKLCDGFNGADLRNICTEAGIHAIRNMRDYVIEEDFFKAARKLTENKKLEGTLAYEQ 486
>gi|428215715|ref|YP_007088859.1| AAA ATPase [Oscillatoria acuminata PCC 6304]
gi|428004096|gb|AFY84939.1| AAA+ family ATPase [Oscillatoria acuminata PCC 6304]
Length = 544
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 34/164 (20%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYR 201
+PN K L++GI +G GKS + + + + G GE R R
Sbjct: 279 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGES----ESRLR 331
Query: 202 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260
+ + + C L+I+++D G + GGT + ++ V TL+ +
Sbjct: 332 QMIQLAEAMSPCVLWIDEIDKAFGNISGGTDGDSGTSRRVFGTLIT-------------W 378
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 302
QE+ V I+ T N+ L A L+R GR ++ ++ PT +R
Sbjct: 379 MQEKTAPVFIVATANNVRILPAELLRKGRFDEIFFLNLPTETER 422
>gi|395326665|gb|EJF59072.1| 26S proteasome subunit P45 [Dichomitus squalens LYAD-421 SS1]
Length = 400
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+++R+ + A
Sbjct: 176 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYA- 234
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 ---REHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 281
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKE 318
R +I+ N TL L+R GR+++ P R + + + S + ++ + E
Sbjct: 282 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHSQPVNKSGEIDYE 341
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 342 AIVKLSDGFNGADL 355
>gi|341893757|gb|EGT49692.1| CBN-RPT-4 protein [Caenorhabditis brenneri]
Length = 398
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 40/218 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A++IR+ + A D +
Sbjct: 181 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 236
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 237 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 286
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 346
Query: 327 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 355
F + F A R V D++ K + +VG
Sbjct: 347 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 384
>gi|429217576|ref|YP_007175566.1| AAA ATPase [Caldisphaera lagunensis DSM 15908]
gi|429134105|gb|AFZ71117.1| AAA family ATPase, CDC48 subfamily [Caldisphaera lagunensis DSM
15908]
Length = 734
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 27/173 (15%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + G N GE + IR+ +++A ++
Sbjct: 498 LFGPPGTGKTLLAKAVATESGANFITIRGPEVLSKWVGESERAIREIFKKA----RQYAP 553
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+F +++DA A G V ++V+ L I D T++Q V +I
Sbjct: 554 VVVFFDEIDAIAALRGIDEGTRVGERIVSQLLTEI-DGITDLQ-----------NVVVIA 601
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 325
N + LIR GR+EK + P +++ V T NVP D V L++
Sbjct: 602 ATNRPEMVDPALIRPGRLEKLVYVPPPDEKGRVEILQIHTRNVPLADDVDLIE 654
>gi|260821714|ref|XP_002606248.1| hypothetical protein BRAFLDRAFT_84010 [Branchiostoma floridae]
gi|229291589|gb|EEN62258.1| hypothetical protein BRAFLDRAFT_84010 [Branchiostoma floridae]
Length = 751
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 89/185 (48%), Gaps = 28/185 (15%)
Query: 159 PLILGIWGGKGQGKSFQCELVFAK-----MGING------NAGEPAKLIRQRYREAADII 207
P+ + + G G GK+ + V A+ + +NG + GE + +R+ ++EA I
Sbjct: 229 PMGILLLGPPGVGKTSLVKTVAAECHAHLVALNGPDVFGPHPGESEENLRRVFQEAVTIS 288
Query: 208 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267
++G C LFI++LDA + GG+ + + N+MV A ++ + D Q R
Sbjct: 289 EEGP-CVLFIDELDALCPKRGGSGK-SQENRMV-AQMLTLMD-----------GQAGRGR 334
Query: 268 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKE-DIVKLV 324
+ ++ N + + L R GR +K P +++R + + R ++ ++ D+ +L
Sbjct: 335 LVVVAATNRPNAIDPALRRPGRFDKEVHVGVPNQQEREEILRVVSRDMSLAEDVDLNRLA 394
Query: 325 DTFPG 329
+ PG
Sbjct: 395 EMTPG 399
>gi|17945503|gb|AAL48804.1| RE23388p [Drosophila melanogaster]
Length = 397
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N +L L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDSLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 327 FPGQSI 332
F G +
Sbjct: 346 FNGADL 351
>gi|268534030|ref|XP_002632145.1| C. briggsae CBR-RPT-4 protein [Caenorhabditis briggsae]
Length = 398
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 40/218 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A++IR+ + A D +
Sbjct: 181 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 236
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 237 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 286
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 346
Query: 327 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 355
F + F A R V D++ K + +VG
Sbjct: 347 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 384
>gi|341038686|gb|EGS23678.1| 26S protease subunit RPT4 (26S protease subunit SUG2)-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 391
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKE 318
+ II+ N TL L+R GR+++ P R + + + S + + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSASVAKEGEIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D F G +
Sbjct: 332 SIVKMSDGFNGADL 345
>gi|357491483|ref|XP_003616029.1| Cell division protease ftsH-like protein [Medicago truncatula]
gi|355517364|gb|AES98987.1| Cell division protease ftsH-like protein [Medicago truncatula]
Length = 689
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 140/311 (45%), Gaps = 46/311 (14%)
Query: 36 KSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDT 95
K+L KV ++S+ L + +S +++++S A L ++ + +D G+++T
Sbjct: 155 KALVKVG-RLSESEFLKTLLRAISNSAKKEESSIGGIAALT-NVGEPTRD-----GILET 207
Query: 96 LFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHIT--KNFLNL 153
AP + ++++ + + L + + + G+ A A ++++V ++ K+F L
Sbjct: 208 T-SAPTD------MVAALEEVQPSLETSTKLSDMKGVGEAKAELEEIVDYLKDPKHFTRL 260
Query: 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGI---NGNAGEPAKLI----RQRYREAADI 206
K+P + I G G GK+ + + + + + E +++ QR R+
Sbjct: 261 GG-KLPKGILIVGPPGTGKTMLARAIAGEAEVPFFSTSGREFEEMVVGVGAQRVRDLFAA 319
Query: 207 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
KK C +FI+++DA G++ N+QM M + N V+L G+ ++N
Sbjct: 320 AKKRLPCIIFIDEIDAFGGKLNS------NDQMY----MKLTLNQMLVELDGL---KQNE 366
Query: 267 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDI 320
+ +I + L+R GR ++ P E R + S + + DNV D+
Sbjct: 367 GIIVIGATKSHKLIDEALLRHGRFDRLVVVRKPDEEGRREILEYHMSKVLKADNV---DL 423
Query: 321 VKLVDTFPGQS 331
+K+ PG S
Sbjct: 424 MKIAQFTPGFS 434
>gi|154151004|ref|YP_001404622.1| proteasome-activating nucleotidase [Methanoregula boonei 6A8]
gi|166199290|sp|A7I8B8.1|PAN_METB6 RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
AltName: Full=Proteasomal ATPase; AltName:
Full=Proteasome regulatory ATPase; AltName:
Full=Proteasome regulatory particle
gi|153999556|gb|ABS55979.1| 26S proteasome subunit P45 family [Methanoregula boonei 6A8]
Length = 436
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 29/163 (17%)
Query: 164 IWGGKGQGKSFQCELVFAK-----MGINGNA------GEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + M + G+ GE A+L+R+ + D+ KK
Sbjct: 217 LYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 272
Query: 213 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
+FI+++DA GA R T T ++ V TLM + L GM E V II
Sbjct: 273 TIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL--------LAGMDGFETRGDVKII 321
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFRT 312
N L L+R GR ++ P E R+ + RT
Sbjct: 322 GATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRT 364
>gi|307190651|gb|EFN74615.1| 26S protease regulatory subunit S10B [Camponotus floridanus]
Length = 389
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E +VKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALPIAKHGEIDYEAVVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|434393705|ref|YP_007128652.1| AAA ATPase central domain protein [Gloeocapsa sp. PCC 7428]
gi|428265546|gb|AFZ31492.1| AAA ATPase central domain protein [Gloeocapsa sp. PCC 7428]
Length = 504
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 35/198 (17%)
Query: 153 LPNVKVPLILGIWG------GKGQGKSFQCELVFAKMG--INGNAGEPAKLIRQRYREAA 204
LP+ + L++GI G K + L+ +G G GE R R+
Sbjct: 256 LPHPRGLLLVGIQGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLVGES----ESRTRQMI 311
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
+ + C L+I+++D +GG +++ + +A E+
Sbjct: 312 QVAEALSPCILWIDEIDKAFAGIGGKGDAGTTSRVFGTFITWLA--------------EK 357
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS---GIFRTDNVPKED 319
V ++ T ND +L ++R GR ++ ++ PT+E+R + + R N+ D
Sbjct: 358 TSPVFVVATANDIQSLPPEMLRKGRFDEIFFVGLPTQEERKAIFTVHLSRLRPHNIKTYD 417
Query: 320 IVKLVDTFPGQSIDFFGA 337
I +L P DF GA
Sbjct: 418 IERLAYETP----DFSGA 431
>gi|332030866|gb|EGI70502.1| 26S protease regulatory subunit S10B [Acromyrmex echinatior]
Length = 393
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALPIAKHGEIDYEAVVKLSDG 341
Query: 327 FPGQSI 332
F G +
Sbjct: 342 FNGADL 347
>gi|260944346|ref|XP_002616471.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238850120|gb|EEQ39584.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 427
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 202 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 260
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 261 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 309
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK----- 317
+ +I+ N TL L+R GR+++ P R+ V T V K
Sbjct: 310 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEVFK--IHTAKVAKQGEFD 365
Query: 318 -EDIVKLVDTFPGQSI 332
E VK+ D F G I
Sbjct: 366 FEAAVKMSDGFNGADI 381
>gi|367009390|ref|XP_003679196.1| hypothetical protein TDEL_0A06530 [Torulaspora delbrueckii]
gi|359746853|emb|CCE89985.1| hypothetical protein TDEL_0A06530 [Torulaspora delbrueckii]
Length = 435
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 25/145 (17%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V A +G N GE A++IR+ + A K+ +
Sbjct: 218 LYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA----KEHEP 273
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + Q+ G N + +I+
Sbjct: 274 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQT---KVIM 323
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAP 297
N TL L+R GR+++ P
Sbjct: 324 ATNRPDTLDPALLRPGRLDRKIEIP 348
>gi|313225098|emb|CBY20891.1| unnamed protein product [Oikopleura dioica]
gi|313245882|emb|CBY34867.1| unnamed protein product [Oikopleura dioica]
Length = 749
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 41/222 (18%)
Query: 189 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-----GAGRMGGTTQY--TVNNQMVN 241
AG+ AK IR+ + I +K + C +FI++LDA G GG + T+N +V
Sbjct: 375 AGKGAKDIREMF----SIARKNQPCIVFIDELDAIGKAQGMSAGGGAAEKDNTLNQLLVE 430
Query: 242 ATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK-----FYWA 296
M +DN T + ++ N+ ++L L+R GR ++
Sbjct: 431 MDGMTGSDNDT---------------IVLMAATNNPTSLDEALVRPGRFDRKIQCDLPAT 475
Query: 297 PTREDRIGVCSGIFRTDNVPK---EDIVKLVDTFPGQSI----DFFGALRARVYDDEVRK 349
R D V +T+ PK E + KL F G I + L AR D ++
Sbjct: 476 DGRRDIFMVHLKTIKTEKPPKVYAEMLAKLTPGFSGAQIANVVNEAALLAAREQSDLIKS 535
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 391
E I+RI + +++ T + T+ LE G+ +V
Sbjct: 536 SHFEAAIDRI---MSGTRKDNNTMKAETKTILAALEAGKCVV 574
>gi|402086352|gb|EJT81250.1| 26S protease subunit rpt4 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 390
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + +G+ +V E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVVTEGDVDFE 330
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|241958488|ref|XP_002421963.1| 26S protease subunit, putative [Candida dubliniensis CD36]
gi|223645308|emb|CAX39964.1| 26S protease subunit, putative [Candida dubliniensis CD36]
Length = 429
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 25/148 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 204 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 262
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 263 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 311
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
+ II+ N TL L+R GR+++
Sbjct: 312 --QTKIIMATNRPDTLDPALLRAGRLDR 337
>gi|67603252|ref|XP_666536.1| 26S proteasome regulatory subunit [Cryptosporidium hominis TU502]
gi|54657551|gb|EAL36305.1| 26S proteasome regulatory subunit [Cryptosporidium hominis]
Length = 391
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 31/191 (16%)
Query: 156 VKVPLILGIWGGKGQGK---------SFQCEL--VFAKMGINGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK S C V A ++ GE A++IR+ + A
Sbjct: 166 IKTPKGVLLYGPPGTGKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIREMFGYAK 225
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA G+ +Q T ++ + TLM + + QL G +E
Sbjct: 226 D----HQPCVIFMDEIDAIGGKR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 271
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKE 318
V II+ N L L+R GR+++ P R+ + S + + + +
Sbjct: 272 LGAVKIIMATNRPDVLDPALLRPGRLDRKVEIPLPNETSRVEILKIHSSKLAKQGEIDFD 331
Query: 319 DIVKLVDTFPG 329
I KL D F G
Sbjct: 332 AICKLCDGFNG 342
>gi|169600986|ref|XP_001793915.1| hypothetical protein SNOG_03347 [Phaeosphaeria nodorum SN15]
gi|160705850|gb|EAT88552.2| hypothetical protein SNOG_03347 [Phaeosphaeria nodorum SN15]
Length = 393
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + S + + E
Sbjct: 276 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEIMKIHASSVVTDGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D F G +
Sbjct: 334 SIVKMSDGFNGADL 347
>gi|88807547|ref|ZP_01123059.1| hypothetical protein WH7805_13388 [Synechococcus sp. WH 7805]
gi|88788761|gb|EAR19916.1| hypothetical protein WH7805_13388 [Synechococcus sp. WH 7805]
Length = 499
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C L+I+++D G G++GG+ T +Q V AT++ + E+ V ++
Sbjct: 322 CVLWIDEIDKGFGQVGGSDGGT--SQRVLATVLT-------------WMAEKRSAVFVVA 366
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTD----NVPKEDIVKLVDT 326
T N L L+R GR ++ + P+R++R G+ + + ++P +V ++
Sbjct: 367 TANGVERLPPELLRKGRFDEIFLLDLPSRDERCGILTLHLQRRRPQLDLPLSTVVDRTES 426
Query: 327 FPGQSID 333
+ G ++
Sbjct: 427 YSGAELE 433
>gi|298674960|ref|YP_003726710.1| AAA ATPase [Methanohalobium evestigatum Z-7303]
gi|298287948|gb|ADI73914.1| AAA family ATPase, CDC48 subfamily [Methanohalobium evestigatum
Z-7303]
Length = 733
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 33/196 (16%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREA 203
N P + ++G G GK+ + V + + I G GE + IR+ +R+A
Sbjct: 480 NTTPPRGVILYGPPGTGKTMLAKAVSGESEANFISIKGPELLSKYVGESERAIRETFRKA 539
Query: 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K+ +FI+++D+ A R G + V ++V+ L M E
Sbjct: 540 ----KQAAPTVIFIDEIDSIAPRRGKSNDSNVTERVVSQILTE------------MDGIE 583
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPK 317
E V +I N + L+R GR ++ + P +E R + G DNV
Sbjct: 584 ELKDVVVIAATNRLDIVDPALLRPGRFDRMVYVSIPEKESRKMIFNIHLEGKPLADNVDI 643
Query: 318 EDIVKLVDTFPGQSID 333
E + + + + G I+
Sbjct: 644 EKLANITEGYSGADIE 659
>gi|363749395|ref|XP_003644915.1| hypothetical protein Ecym_2365 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888548|gb|AET38098.1| Hypothetical protein Ecym_2365 [Eremothecium cymbalariae
DBVPG#7215]
Length = 427
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V A +G N GE A++IR+ + A K+ +
Sbjct: 210 LYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA----KEHEP 265
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + Q+ G N + +I+
Sbjct: 266 CIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQT---KVIM 315
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R+ + + + +T E VK+ D
Sbjct: 316 ATNRPDTLDPALLRPGRLDRKIEISLPNEAGRLEIFKIHTAKVKKTGEFDFEATVKMSDG 375
Query: 327 FPGQSI 332
F G I
Sbjct: 376 FNGADI 381
>gi|381159205|ref|ZP_09868438.1| AAA+ family ATPase [Thiorhodovibrio sp. 970]
gi|380880563|gb|EIC22654.1| AAA+ family ATPase [Thiorhodovibrio sp. 970]
Length = 490
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 38/198 (19%)
Query: 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYRE 202
PN + P + + G +G GKS + V + G+ N GE + +R+ +
Sbjct: 258 PNAERPRGIMLLGVQGGGKSLAAKAVAGRFGVPLLRLDFGALYNKYIGETERNLRESLKT 317
Query: 203 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 262
A + C L++++++ G GG++ +++ L +A+ V L
Sbjct: 318 AEVMAP----CVLWLDEIEKGLA--GGSSDEGTGQRIIGTLLTWMAERKAAVFL------ 365
Query: 263 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTRED--RIGVCSGIFRTDNV 315
+ T ND L L+R GR ++ ++ A R + RI + D+
Sbjct: 366 --------VATSNDIKQLPPELVRKGRFDEIFFVDLPDAEVRREIFRIHLAKRNLNPDDF 417
Query: 316 PKEDIVKLVDTFPGQSID 333
+ + L D F G I+
Sbjct: 418 DLDQLAALSDGFSGAGIE 435
>gi|307207117|gb|EFN84926.1| 26S protease regulatory subunit S10B [Harpegnathos saltator]
Length = 393
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALPIAKHGEIDYEAVVKLSDG 341
Query: 327 FPGQSI 332
F G +
Sbjct: 342 FNGADL 347
>gi|424896405|ref|ZP_18319979.1| AAA+ family ATPase [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393180632|gb|EJC80671.1| AAA+ family ATPase [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 298
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 16/168 (9%)
Query: 186 NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 245
+G GE LI Q +++ + K K L I++ D+ A + + VN +
Sbjct: 115 SGMVGEMGTLISQAFQQVIKAVGKNKRAILIIDEGDSLAANRSQEHSHHEDKVAVNTLIQ 174
Query: 246 NIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 305
+I D + N R+ +I+ N S L L R + + + PT E+R +
Sbjct: 175 HIDDL-----------RRFNGRILVILCTNRLSVLDPALRRRAAVVRAFSRPTPEERKAL 223
Query: 306 CSGIFRTDNVPKEDIVKLVDTFPGQSID----FFGALRARVYDDEVRK 349
S N +D+ KLV G D + +R R+Y + K
Sbjct: 224 FSSDLAALNPSADDLAKLV-AITGPRADQPTWTYSDIRTRLYPQALAK 270
>gi|421074043|ref|ZP_15535085.1| AAA ATPase central domain protein [Pelosinus fermentans JBW45]
gi|392527840|gb|EIW50924.1| AAA ATPase central domain protein [Pelosinus fermentans JBW45]
Length = 492
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 42/224 (18%)
Query: 190 GEPAKLIRQRYREAADIIKKGKM--CCLFINDLDAGAGRMG---GTTQYTVNNQMVNATL 244
G A+ +RQ ++ A + K+ + LFI++LD G+ G G T+Y +Q +N L
Sbjct: 142 GVGAQRVRQLFQSAKSLAKQQRKDSAILFIDELDILGGKRGQNAGNTEY---DQTLNELL 198
Query: 245 MNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 302
VQ+ G+ + +++ ++ II N L + L+R GR ++ P ++ R
Sbjct: 199 ---------VQMDGL-SFDDSVKILIIGATNRIDILDSALLRPGRFDRHVKVELPDKKGR 248
Query: 303 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG-------------ALRARVYDDEVRK 349
+ + S T N P V L +T + F G ALR + +
Sbjct: 249 LHILS--LHTKNKPLAADVSL-ETLAANTFGFSGAHLESLTNEAAILALREEMVTITSKH 305
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 393
+ S + +G++L P T E+ ++ + E G LV E
Sbjct: 306 FQSAIDKVIMGEKL---DRRPNTLEKQRIAIH---EAGHALVSE 343
>gi|115389152|ref|XP_001212081.1| 26S protease regulatory subunit S10B [Aspergillus terreus NIH2624]
gi|114194477|gb|EAU36177.1| 26S protease regulatory subunit S10B [Aspergillus terreus NIH2624]
Length = 393
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + M N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 318
+ II+ N TL L+R GR+++ P R + + + S + D + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQLDGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|406862559|gb|EKD15609.1| 26S protease regulatory subunit s10b [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 390
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + +G+ +V E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEIMKIHAAGVVTEGDVDFE 330
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|359484119|ref|XP_002267202.2| PREDICTED: cell division control protein 48 homolog B-like [Vitis
vinifera]
Length = 605
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 23/163 (14%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P L ++G G GK+ V + G + +AGE +++R+ + EA+
Sbjct: 47 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTTISPHTVHRAHAGESERILREAFSEAS 106
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
GK +FI+++DA R + + TLM+ ++ P + +
Sbjct: 107 SHAVSGKPSVIFIDEIDALCPRRSSRREQDIRLASQLFTLMD-SNKPLSASV-------- 157
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGV 305
P+V ++ + N + L R GR E PT E+R +
Sbjct: 158 -PQVVVVASTNRVDAIDPALRRSGRFDAEVEVTTPTEEERFQI 199
>gi|355572388|ref|ZP_09043532.1| Proteasome-activating nucleotidase [Methanolinea tarda NOBI-1]
gi|354824762|gb|EHF09004.1| Proteasome-activating nucleotidase [Methanolinea tarda NOBI-1]
Length = 412
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 22/143 (15%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 248
GE A+L+R+ + D+ KK +FI+++DA GA R TT ++ V TLM +
Sbjct: 229 GEGARLVRELF----DLAKKKAPTIIFIDEIDAVGASRTESTTS---GDREVQRTLMQL- 280
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE--DRIGVC 306
L GM E V II N L L+R GR ++ P + R+ +
Sbjct: 281 -------LAGMDGFERRGDVKIIGATNRIDILDRALLRPGRFDRIIEIPLPDILGRVAIL 333
Query: 307 SGIFRT----DNVPKEDIVKLVD 325
R +NV E+I +L +
Sbjct: 334 KVHTRKMNLDENVDLEEIARLTE 356
>gi|83315300|ref|XP_730734.1| 26S proteasome subunit P45 [Plasmodium yoelii yoelii 17XNL]
gi|23490548|gb|EAA22299.1| 26S proteasome subunit P45 family, putative [Plasmodium yoelii
yoelii]
Length = 475
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 189 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 248
GE A+L+R+ ++ A K K C LFI+++DA G G + + + V T++ I
Sbjct: 267 VGEGARLVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIV 320
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
+ QL G N+ + +I+ N TL + L+R GR+++
Sbjct: 321 N-----QLDGFDNRGN---IKVIMATNRPDTLDSALVRPGRIDR 356
>gi|356502624|ref|XP_003520118.1| PREDICTED: cell division control protein 48 homolog B-like [Glycine
max]
Length = 606
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 26/181 (14%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P L ++G G GK+ V + G + +AGE +++R+ + EA+
Sbjct: 45 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHRAHAGESERILREAFSEAS 104
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
+ GK +FI+++DA R + V TLM+ ++ PT
Sbjct: 105 SHVALGKPSVIFIDEIDALCARRDSKREQDVRVASQLFTLMD-SNKPTF----------S 153
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 322
P V ++ + N + L R GR E P +DR + T +P + ++
Sbjct: 154 TPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEDDRFQILK--LYTKMIPLDPVLD 211
Query: 323 L 323
L
Sbjct: 212 L 212
>gi|441521945|ref|ZP_21003600.1| putative ATPase [Gordonia sihwensis NBRC 108236]
gi|441458383|dbj|GAC61561.1| putative ATPase [Gordonia sihwensis NBRC 108236]
Length = 740
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 27/180 (15%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINGNAGEPAKLI-------RQRYREAADIIKKGKMCCLF 216
++G G GK+F + A ++ ++ + A+L+ + R+ D ++ +F
Sbjct: 516 LYGPPGCGKTFVVRALAASGRLSVHSVKGAELLDKWVGSSERAVRDLFDRARESAPSMIF 575
Query: 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNI--ADNPTNVQLPGMYNQEENPRVPIIVTG 274
++++DA A R GG+T V +++V A L + A+ T+V + G N+ +
Sbjct: 576 LDEVDALAPRRGGSTDSGVADRVVAALLTELDGAEPLTDVVVLGATNRPD---------- 625
Query: 275 NDFSTLYAP-LIRDGRMEKFYWAPTRE--DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQS 331
L P L+R GR+E+ + P + R + R+ +P D+ L G S
Sbjct: 626 -----LVDPALLRPGRLERLVFVPPPDAAARADILRAAARSIPMPDVDLEALAAELEGYS 680
>gi|5669047|gb|AAD46145.1| 19S proteasome regulatory complex subunit S6A [Arabidopsis
thaliana]
Length = 424
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
V+ P + ++G G GK+ Q F K+ + G+ AKL+R ++ A
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 260
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 261 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 317
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVHF 366
Query: 318 EDIVKLVDTFPGQSI 332
E++ + D F G +
Sbjct: 367 EELARSTDDFHGAQL 381
>gi|126661984|ref|ZP_01732983.1| CHU large protein; uncharacterized [Flavobacteria bacterium BAL38]
gi|126625363|gb|EAZ96052.1| CHU large protein; uncharacterized [Flavobacteria bacterium BAL38]
Length = 1715
Score = 41.2 bits (95), Expect = 1.0, Method: Composition-based stats.
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 440 GCTDPAAANYDPTARSDDGSCNY 462
GCTDPA+ NY+P A DDGSC Y
Sbjct: 280 GCTDPASTNYNPLATIDDGSCVY 302
>gi|410671645|ref|YP_006924016.1| Proteasome-activating nucleotidase [Methanolobus psychrophilus R15]
gi|409170773|gb|AFV24648.1| Proteasome-activating nucleotidase [Methanolobus psychrophilus R15]
Length = 412
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 131/317 (41%), Gaps = 57/317 (17%)
Query: 17 LKINGSS-RFSLVPSSVFLGKSLKKVSSKVSQQ--RILSKSFKVVSEYDEEKQTSQDRWA 73
LK+N + R L+ +S+ L + SSK+ +Q ++ + S + EK + R
Sbjct: 41 LKVNNENMRAKLLEASMMANTYLDE-SSKLKKQIEQLTRPPLFIASVMEVEKDMALIRQH 99
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
G ++Q+ +T+ + T FQ +++G V +++ +S R + + L
Sbjct: 100 G------NNQEVVTK----IPTHFQGEIQAGMRVCVNAAFSIVSIISRAADVRAQVMELI 149
Query: 134 IAPAF-------MDKVVVHITKNFLNLP----------NVKVPLILGIWGGKGQGKSF-- 174
+P +D V+ + ++ + LP ++ P + ++G G GK+
Sbjct: 150 TSPGIDYDMIGGLDDVLKEVIES-VELPLTEPELFERIGIEPPTGVLLYGAPGTGKTLIA 208
Query: 175 -----QCELVFAKMG----INGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
+ + F +M I GE A+L++ ++ A D LFI+++DA G
Sbjct: 209 KAVASRAQATFIRMSGSDLIQKFVGEGARLVKDVFQMARD----KAPTILFIDEIDAVGG 264
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
T T + VN T++ + L M + V II N L L+
Sbjct: 265 MR--THDGTTGSAEVNRTMLQL--------LAEMDGFDATNNVKIIAATNRIDLLDPALL 314
Query: 286 RDGRMEKFYWAPTREDR 302
R GR ++ P +++
Sbjct: 315 RPGRFDRVIEVPLPDEK 331
>gi|440493762|gb|ELQ76191.1| 26S proteasome regulatory complex, ATPase RPT4 [Trachipleistophora
hominis]
Length = 324
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 25/149 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + A M I GE +++IR+ ++ A ++
Sbjct: 107 LYGPPGTGKTLLARAIAATMDVSFLKVVASSLIEKYIGESSRMIREMFQYA----RERTP 162
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +FI+++DA G+ +T+ + +++ V TLM + + QL G + + +V +I+
Sbjct: 163 CIIFIDEIDAIGGKR--STESSSSDREVQRTLMELLN-----QLDGFKSLD---KVKVIM 212
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTRED 301
N L L+R GR+++ P D
Sbjct: 213 ATNRPDILDPALLRPGRLDRKIEIPLPND 241
>gi|374581783|ref|ZP_09654877.1| ATP-dependent Zn protease [Desulfosporosinus youngiae DSM 17734]
gi|374417865|gb|EHQ90300.1| ATP-dependent Zn protease [Desulfosporosinus youngiae DSM 17734]
Length = 489
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 189 AGEPAKLIRQRYREAADIIKKGKM--CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 246
AG A+ +R +R A ++++K K +FI+++D + G + +Q +N L
Sbjct: 137 AGVGAERVRGLFRRAREMVRKEKKSSAIIFIDEMDILGAKRGSNVSHHEYDQTLNQLL-- 194
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304
+++ G+ ++ P V ++ N L A L+R GR ++ P +E R+
Sbjct: 195 -------IEMDGL-KVDQGPHVLVMAATNRPEALDAALLRPGRFDRQVKVDLPDKEGRLA 246
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
+ T N P + V L + ++ F GA
Sbjct: 247 ILQ--IHTKNKPLAEEVSL-EEIAHETFGFSGA 276
>gi|367042920|ref|XP_003651840.1| hypothetical protein THITE_2112577 [Thielavia terrestris NRRL 8126]
gi|346999102|gb|AEO65504.1| hypothetical protein THITE_2112577 [Thielavia terrestris NRRL 8126]
Length = 391
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + +G+ + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVAKEGEIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|297742735|emb|CBI35369.3| unnamed protein product [Vitis vinifera]
Length = 3499
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 23/163 (14%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P L ++G G GK+ V + G + +AGE +++R+ + EA+
Sbjct: 47 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTTISPHTVHRAHAGESERILREAFSEAS 106
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
GK +FI+++DA R + + TLM+ ++ P + +
Sbjct: 107 SHAVSGKPSVIFIDEIDALCPRRSSRREQDIRLASQLFTLMD-SNKPLSASV-------- 157
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGV 305
P+V ++ + N + L R GR E PT E+R +
Sbjct: 158 -PQVVVVASTNRVDAIDPALRRSGRFDAEVEVTTPTEEERFQI 199
>gi|145255749|ref|XP_001399076.1| 26S protease subunit rpt4 [Aspergillus niger CBS 513.88]
gi|134084670|emb|CAK43348.1| unnamed protein product [Aspergillus niger]
gi|350630839|gb|EHA19211.1| hypothetical protein ASPNIDRAFT_212230 [Aspergillus niger ATCC
1015]
gi|358373476|dbj|GAA90074.1| 26S protease regulatory subunit S10B [Aspergillus kawachii IFO
4308]
Length = 393
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + M N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 318
+ II+ N TL L+R GR+++ P R + + + S + D + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQLDGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|392959644|ref|ZP_10325126.1| AAA ATPase central domain protein [Pelosinus fermentans DSM 17108]
gi|421052490|ref|ZP_15515479.1| AAA ATPase central domain protein [Pelosinus fermentans B4]
gi|421058669|ref|ZP_15521336.1| AAA ATPase central domain protein [Pelosinus fermentans B3]
gi|421066382|ref|ZP_15527996.1| AAA ATPase central domain protein [Pelosinus fermentans A12]
gi|421070554|ref|ZP_15531686.1| AAA ATPase central domain protein [Pelosinus fermentans A11]
gi|392443221|gb|EIW20772.1| AAA ATPase central domain protein [Pelosinus fermentans B4]
gi|392448180|gb|EIW25383.1| AAA ATPase central domain protein [Pelosinus fermentans A11]
gi|392456197|gb|EIW32951.1| AAA ATPase central domain protein [Pelosinus fermentans DSM 17108]
gi|392456274|gb|EIW33025.1| AAA ATPase central domain protein [Pelosinus fermentans A12]
gi|392460324|gb|EIW36639.1| AAA ATPase central domain protein [Pelosinus fermentans B3]
Length = 492
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 23/155 (14%)
Query: 190 GEPAKLIRQRYREAADIIKKGKM--CCLFINDLDAGAGRMG---GTTQYTVNNQMVNATL 244
G A+ +RQ ++ A + K+ + LFI++LD G+ G G T+Y +Q +N L
Sbjct: 142 GVGAQRVRQLFQSAKSLAKQQRKDSAILFIDELDILGGKRGQNAGNTEY---DQTLNELL 198
Query: 245 MNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 302
VQ+ G+ + +++ ++ II N L + L+R GR ++ P ++ R
Sbjct: 199 ---------VQMDGL-SFDDSVKILIIGATNRIDILDSALLRPGRFDRHVKVELPDKKGR 248
Query: 303 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
+ + S T N P V L +T + F GA
Sbjct: 249 LHILS--LHTKNKPLAADVSL-ETLAANTFGFSGA 280
>gi|341896869|gb|EGT52804.1| hypothetical protein CAEBREN_04435 [Caenorhabditis brenneri]
Length = 268
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 40/218 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A++IR+ + A D +
Sbjct: 51 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 106
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 107 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 156
Query: 273 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 157 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 216
Query: 327 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 355
F + F A R V D++ K + +VG
Sbjct: 217 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 254
>gi|328773002|gb|EGF83039.1| hypothetical protein BATDEDRAFT_33940 [Batrachochytrium
dendrobatidis JAM81]
Length = 402
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 32/195 (16%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQ 198
FL + +K P + ++G G GK+ V A + N GE A+LIR+
Sbjct: 172 FLRV-GIKPPKGVLLYGPPGTGKTLLARAVAATLECNFLKVVSSAIVDKYIGESARLIRE 230
Query: 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
+ A K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 231 MFGYA----KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG 284
Query: 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRT 312
+ +I+ N TL L+R GR+++ P + R+ V S I +
Sbjct: 285 --------QTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEVIKIHASTITKH 336
Query: 313 DNVPKEDIVKLVDTF 327
+ E IVKL + F
Sbjct: 337 GEIDYEAIVKLSEGF 351
>gi|345872617|ref|ZP_08824548.1| AAA ATPase central domain protein [Thiorhodococcus drewsii AZ1]
gi|343918280|gb|EGV29046.1| AAA ATPase central domain protein [Thiorhodococcus drewsii AZ1]
Length = 504
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 160 LILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIK 208
L+LG+ GG GKS + V ++G+ + GE K +R+ E AD++
Sbjct: 268 LLLGVQGG---GKSLAAKAVAGRLGVPLLRLDFGALYDKYIGETEKNLRKAL-ETADLMS 323
Query: 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268
C L+I++++ G G+ V +++ L +A E RV
Sbjct: 324 P---CVLWIDEIEKGIA--TGSEDEGVGRRVLGTLLTWMA--------------ERKSRV 364
Query: 269 PIIVTGNDFSTLYAPLIRDGRMEKFYW 295
+ T ND S L LIR GR+++ ++
Sbjct: 365 FLAATANDISRLPPELIRKGRIDELFF 391
>gi|121709954|ref|XP_001272593.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
clavatus NRRL 1]
gi|119400743|gb|EAW11167.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
clavatus NRRL 1]
Length = 393
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + M N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 318
+ II+ N TL L+R GR+++ P R + I + S + + ++ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEIIKIHSSTVQLEGDIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|327310719|ref|YP_004337616.1| AAA ATPase [Thermoproteus uzoniensis 768-20]
gi|326947198|gb|AEA12304.1| AAA family ATPase, possible cell division control protein cdc48
[Thermoproteus uzoniensis 768-20]
Length = 730
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 39/207 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + G N A GE K+IR+ +++A +
Sbjct: 492 LFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMIREIFQKA----RMAAP 547
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +FI+++DA A G V+ ++V L ++ G+ E V +I
Sbjct: 548 CVVFIDEIDALASARGLGADSFVSERVVAQLL---------AEMDGIRTLEN---VVVIG 595
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 326
N + L+R GR ++ + P + R + + T NVP E++ + +
Sbjct: 596 ATNRPDLVDPALLRPGRFDRIIYVPPPDFRARLDIFLIHTRNVPLAKDVDLEELARRTEG 655
Query: 327 FPGQSIDF------FGALRARVYDDEV 347
+ G I+ F ALR + EV
Sbjct: 656 YSGADIELVVREATFMALREDINAKEV 682
>gi|154279056|ref|XP_001540341.1| 26S protease regulatory subunit S10B [Ajellomyces capsulatus NAm1]
gi|150412284|gb|EDN07671.1| 26S protease regulatory subunit S10B [Ajellomyces capsulatus NAm1]
Length = 392
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 332
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 333 SIVKMSDGLNGADL 346
>gi|71019677|ref|XP_760069.1| hypothetical protein UM03922.1 [Ustilago maydis 521]
gi|46099715|gb|EAK84948.1| hypothetical protein UM03922.1 [Ustilago maydis 521]
Length = 288
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 63 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 121
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 122 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 170
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKE 318
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 171 --KTKVIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTRPVAKKEELDYE 228
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 229 AIVKLSDGFNGADL 242
>gi|445499253|ref|ZP_21466108.1| AAA ATPase [Janthinobacterium sp. HH01]
gi|444789248|gb|ELX10796.1| AAA ATPase [Janthinobacterium sp. HH01]
Length = 940
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 23/172 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQC-------ELVFAKMGINGNAGEPAKLIRQRYREAADIIK 208
+K P + I G G GKS +L ++ I G+ R A + +
Sbjct: 269 IKPPKGVLIAGMPGCGKSLSAKVAASLFQLPLLRLDIGSLLGKYVGESEHNMRRALQLAE 328
Query: 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268
C L++++L+ MGG+ V+++++ L + QE+ V
Sbjct: 329 TISPCVLWLDELEKAFVGMGGSNASEVSSRLLGYFLT--------------WLQEKTGAV 374
Query: 269 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKE 318
+I T ND S + L+R GR ++ ++ P ++R + + R P E
Sbjct: 375 FVIATANDISAIPPELMRKGRFDEIFYVGFPDADERRAILAIHLRKAKQPLE 426
>gi|342184049|emb|CCC93530.1| protease regulatory ATPase subunit 4 [Trypanosoma congolense
IL3000]
Length = 399
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 34/184 (18%)
Query: 164 IWGGKGQGKSFQCELV-----------FAKMGINGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + + A ++ GE A+++R+ + A ++ +
Sbjct: 182 LYGPPGTGKTLLAKAIASNVDAAFLKIVASSIVDKYIGESARVLREMFAFA----REHEP 237
Query: 213 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
C +FI+++DA G R+ GT+ +++ V TLM + L M E+ +V +I
Sbjct: 238 CIIFIDEIDAIGGKRIDGTS----SDREVQRTLMEL--------LHQMDGFEKLGKVKVI 285
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVD 325
+ N TL + L+R GR+++ P R+ + S I + ++ + IV L +
Sbjct: 286 MATNRPDTLDSALMRPGRLDRKIEIGLPNEAARLDILKIHASKITKAGDIDYDSIVTLSE 345
Query: 326 TFPG 329
F G
Sbjct: 346 GFNG 349
>gi|171684681|ref|XP_001907282.1| hypothetical protein [Podospora anserina S mat+]
gi|170942301|emb|CAP67953.1| unnamed protein product [Podospora anserina S mat+]
Length = 390
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVASAIVDKYIGESARLIREMFGYA- 223
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + +G+ + + E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVAKEGEIDFE 330
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|168049694|ref|XP_001777297.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671399|gb|EDQ57952.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 411
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 36/215 (16%)
Query: 138 FMDKVVVHIT--KNFLNLPNVKVPLILGIWGGKGQGKSF-------QCELVFAKMG---- 184
M+ +V+ +T + F +L V+ P + ++G G GK+ Q F K+
Sbjct: 170 LMEAIVLPMTHKERFESL-GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 228
Query: 185 INGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNAT 243
+ G+ AKL+R ++ A K+ C +FI+++DA G R Q
Sbjct: 229 VQMFIGDGAKLVRDAFQLA----KEKAPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLE 284
Query: 244 LMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTRED 301
L+N QL G + E R+ +I N L L+R GR+++ + PT E
Sbjct: 285 LLN--------QLDGFSSDE---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEA 333
Query: 302 RIGVCSGIFRTDNVPK----EDIVKLVDTFPGQSI 332
R + R NV E++ + D F G +
Sbjct: 334 RARILQIHSRKMNVRGDVNFEELARSTDDFNGAQL 368
>gi|225562323|gb|EEH10602.1| 26S protease regulatory subunit [Ajellomyces capsulatus G186AR]
gi|325089508|gb|EGC42818.1| 26S protease regulatory subunit S10B [Ajellomyces capsulatus H88]
Length = 392
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 332
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 333 SIVKMSDGLNGADL 346
>gi|332158940|ref|YP_004424219.1| cell division control protein [Pyrococcus sp. NA2]
gi|331034403|gb|AEC52215.1| cell division control protein [Pyrococcus sp. NA2]
Length = 840
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Query: 164 IWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + + I G GE K IR+ +R+A ++
Sbjct: 586 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 641
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+FI+++DA A G T V ++++N L ++ G+ EN V +I
Sbjct: 642 AIIFIDEIDAIAPARGTTEGERVTDRIINQLL---------TEMDGLV---ENSGVVVIA 689
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 316
N L L+R GR ++ P ++R T N+P
Sbjct: 690 ATNRPDILDPALLRPGRFDRLILVPAPDERARFEIFKVHTRNMP 733
>gi|301121358|ref|XP_002908406.1| 26S protease regulatory subunit 6A-A [Phytophthora infestans T30-4]
gi|262103437|gb|EEY61489.1| 26S protease regulatory subunit 6A-A [Phytophthora infestans T30-4]
Length = 433
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 75/190 (39%), Gaps = 29/190 (15%)
Query: 164 IWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAADIIKKGKM 212
+ G G GK+ Q + +F K+ + G+ AKL+R + A + K
Sbjct: 212 LHGPPGTGKTLLARACAKQTDAIFLKLAAPQLVQMFIGDGAKLVRDAFELAKEKCKDQNR 271
Query: 213 --CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269
+FI++LDA G R GG Q L+N QL G + N ++
Sbjct: 272 GGAIIFIDELDAIGTKRFGGEQSGDREVQRTMLELLN--------QLDGFTS---NTKIK 320
Query: 270 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKLVDTF 327
+I N L L+R GR+++ PT E R + R NV ED D
Sbjct: 321 VIAATNRPDVLDPALLRSGRLDRKIELPHPTEEARARILQIHSRKMNVDTEDTN--FDEL 378
Query: 328 PGQSIDFFGA 337
+ DF GA
Sbjct: 379 ARSTDDFNGA 388
>gi|261201460|ref|XP_002627130.1| 26S protease regulatory subunit S10B [Ajellomyces dermatitidis
SLH14081]
gi|239592189|gb|EEQ74770.1| 26S protease regulatory subunit S10B [Ajellomyces dermatitidis
SLH14081]
gi|327348334|gb|EGE77191.1| proteasome regulatory particle subunit Rpt4 [Ajellomyces
dermatitidis ATCC 18188]
Length = 392
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 332
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 333 SIVKMSDGLNGADL 346
>gi|315231037|ref|YP_004071473.1| cell division FtsH-like protein [Thermococcus barophilus MP]
gi|315184065|gb|ADT84250.1| cell division FtsH-like protein [Thermococcus barophilus MP]
Length = 796
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 164 IWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + +GI G GE K IR+ +R+A ++
Sbjct: 556 LYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIREIFRKA----RQAAP 611
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+FI+++DA A R G T V ++++N L M EEN V +I
Sbjct: 612 TVIFIDEIDAIAPRRG-TDVNRVTDRLINQLLTE------------MDGIEENSGVVVIA 658
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 302
N L L+R GR ++ P +++
Sbjct: 659 ATNRPDILDPALLRPGRFDRLILVPAPDEK 688
>gi|119490332|ref|ZP_01622810.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119453991|gb|EAW35145.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 519
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 39/201 (19%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYR 201
LPN K L+ GI +G GKS + + A+ + G GE +RQ +
Sbjct: 259 LPNPKGVLLAGI---QGTGKSLSAKTIAAEWKLPLLRLDVGRLFGGIVGESESRVRQVIK 315
Query: 202 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 261
A + C L+I+++D + +N++ + +A
Sbjct: 316 LAEAV----SPCVLWIDEIDKAFSQNYSRGDSGTSNRVFGTFITWLA------------- 358
Query: 262 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSGIFRTDNVP 316
E+ V I+ T N+ L A LIR GR+++ +W P RE V R +
Sbjct: 359 -EKTSPVFIVATANNVEALPAELIRKGRLDEIFWIGLPSQPEREQIFQVHLHRLRPERFK 417
Query: 317 KEDIVKLVDTFPGQSIDFFGA 337
+ +S+DF GA
Sbjct: 418 NNEFD--FHLLASRSLDFSGA 436
>gi|310790858|gb|EFQ26391.1| 26S proteasome subunit P45 family protein [Glomerella graminicola
M1.001]
Length = 391
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P R+ + SG+ + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHASGVVTEGEIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|429329213|gb|AFZ80972.1| 26S proteasome ATPase subunit, putative [Babesia equi]
Length = 404
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 33/239 (13%)
Query: 156 VKVPLILGIWGGKGQGKSF---------QCEL--VFAKMGINGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ C V A ++ GE AK+IR+ + A
Sbjct: 179 IKPPKGVLLYGPPGTGKTLLARALASDIDCNFLKVVASAVVDKYIGESAKIIREMFGYA- 237
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR +Q T ++ + TLM + L + +E
Sbjct: 238 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMEL--------LTHLDGFDE 284
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCS-GIFRTDNVPKE 318
+V II+ N L L+R GR+++ P R + + + S + + ++ E
Sbjct: 285 LGQVKIIMATNRPDVLDPALLRPGRIDRKIEIPLPNEAARVEILKIHSKKLTKQGDIDYE 344
Query: 319 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK--EGPPTFEQ 375
+ +L D F G + +R +I E + ++L +K EG +E+
Sbjct: 345 AVCRLCDGFNGADLRNVCTEAGICAIRAMRDYIIEEDFFKAARKLTENKKLEGTLAYEK 403
>gi|407921499|gb|EKG14641.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 394
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 227
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 228 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 276
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P R+ + G+ + E
Sbjct: 277 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHAGGVQTEGEIDFE 334
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D F G +
Sbjct: 335 SIVKMSDGFNGADL 348
>gi|392565358|gb|EIW58535.1| ATPase [Trametes versicolor FP-101664 SS1]
Length = 400
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A + N GE A+++R+ + A
Sbjct: 176 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYA- 234
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 ---REHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 281
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKE 318
R +I+ N TL L+R GR+++ P R + + + S + ++ + E
Sbjct: 282 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHSQPVNKSGEMDYE 341
Query: 319 DIVKLVDTFPGQSI 332
IVKL D F G +
Sbjct: 342 AIVKLSDGFNGADL 355
>gi|452823572|gb|EME30581.1| AAA-type ATPase [Galdieria sulphuraria]
Length = 699
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEP 192
+H + F L + P + ++G G GK+ + + + G +N GE
Sbjct: 443 IHHPERFEAL-GLSRPAGVLLYGPPGCGKTLLAKAIARESGANFISIKGPELLNKYVGES 501
Query: 193 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 252
+ +R+ ++ + C +F ++LDA A R GG YT + +++ ++
Sbjct: 502 ERAVRRVFQRG----RASAPCIIFFDELDALAPRRGGFASYTDSESFGSSS--GASERVV 555
Query: 253 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
N L + E +V +I N + ++R GR++K + P
Sbjct: 556 NQLLTELDGVEARSQVFVIAATNRPDMIDPAMLRPGRLDKLLFVP 600
>gi|239611652|gb|EEQ88639.1| 26S protease regulatory subunit S10B [Ajellomyces dermatitidis
ER-3]
Length = 392
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 332
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 333 SIVKMSDGLNGADL 346
>gi|146299717|ref|YP_001194308.1| ATPase central domain-containing protein [Flavobacterium johnsoniae
UW101]
gi|146154135|gb|ABQ04989.1| AAA ATPase, central domain protein [Flavobacterium johnsoniae
UW101]
Length = 517
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 31/189 (16%)
Query: 166 GGKGQGKSFQCELVFA-------KMGINGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 218
G G GKS + + A ++ + G+ R +EA C L+I+
Sbjct: 273 GVPGCGKSLSAKFIAANWNLPLYRLDLAAIQGQYLGQSENRLKEALASADNAAPCVLWID 332
Query: 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 278
+++ G G+ + +MV L + QE +V ++ T ND S
Sbjct: 333 EIEKGLSGAAGSNDGGTSTRMVGQFLF--------------WLQESMAKVFVVSTANDVS 378
Query: 279 TLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK------EDIVKLVDTFPGQ 330
L L+R GR ++ ++ P +R + + + +P+ +V++ D F G
Sbjct: 379 KLPPELLRRGRFDELFFVDLPGEAERKDIINLYINRNLLPQPSPPTLNHLVEISDGFAGS 438
Query: 331 SIDFFGALR 339
I+ GA+R
Sbjct: 439 DIE--GAVR 445
>gi|29566380|ref|NP_817947.1| gp96 [Mycobacterium phage Corndog]
gi|29425105|gb|AAN02028.1| gp96 [Mycobacterium phage Corndog]
Length = 566
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 24/169 (14%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFA-------KMGINGNAGEPAKLIRQRYREAADII 207
N+K+P + G G GK+ C+ + A ++ IN G+ R R I
Sbjct: 309 NLKLPKGAMLIGVSGCGKTLSCQALGAEWNWPVVRLDINALKGKYVGESESRLRGIFSKI 368
Query: 208 KKGKMCCLFINDLD-AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
++I++++ A G + G+ V+ + A L + Q+
Sbjct: 369 DALGQVIVYIDEVEKALEGAVSGSADGGVSADALGAILT--------------WMQDRAG 414
Query: 267 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD 313
+ +++T ND S L +R GR ++ +W PTR +R+ V + R++
Sbjct: 415 QAFVMMTANDPSKLPPEFLRKGRFDEVWWIDLPTRAERMSVAAATLRSN 463
>gi|429855222|gb|ELA30190.1| 26s protease regulatory subunit s10b [Colletotrichum
gloeosporioides Nara gc5]
Length = 391
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P R+ + SG+ + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHASGVVTEGEIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|400598782|gb|EJP66489.1| 26S proteasome regulatory complex, ATPase RPT4 [Beauveria bassiana
ARSEF 2860]
Length = 391
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSF-----QCEL------VFAKMGINGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ C L V + ++ GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVACSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + +G+ ++ E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKLEIPLPNEVGRLEILKIHAAGVVLDGDIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|354996178|gb|AER47526.1| gp100 [Mycobacterium phage Firecracker]
Length = 566
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 24/169 (14%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFA-------KMGINGNAGEPAKLIRQRYREAADII 207
N+K+P + G G GK+ C+ + A ++ IN G+ R R I
Sbjct: 309 NLKLPKGAMLIGVSGCGKTLSCQALGAEWNWPVVRLDINALKGKYVGESESRLRGIFSKI 368
Query: 208 KKGKMCCLFINDLD-AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266
++I++++ A G + G+ V+ + A L + Q+
Sbjct: 369 DALGQVIVYIDEVEKALEGAVSGSADGGVSADALGAILT--------------WMQDRAG 414
Query: 267 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD 313
+ +++T ND S L +R GR ++ +W PTR +R+ V + R++
Sbjct: 415 QAFVMMTANDPSKLPPEFLRKGRFDEVWWIDLPTRAERMSVAAATLRSN 463
>gi|331219784|ref|XP_003322568.1| 26S protease subunit rpt4 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309301558|gb|EFP78149.1| 26S protease subunit rpt4 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 393
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLAKAVANTLSTNFLKVVSSAIVDKYIGESARLIREMFAYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P R + + + + I + + E
Sbjct: 276 --QTKIIMATNRPDTLDPALMRPGRLDRKIEIPLPNEVARMEILKIHATPIQKQGEIDYE 333
Query: 319 DIVKLVDTFPGQSI 332
IVKL + F G +
Sbjct: 334 SIVKLAEGFNGADL 347
>gi|251796464|ref|YP_003011195.1| Vesicle-fusing ATPase [Paenibacillus sp. JDR-2]
gi|247544090|gb|ACT01109.1| Vesicle-fusing ATPase [Paenibacillus sp. JDR-2]
Length = 499
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 24/163 (14%)
Query: 180 FAKMGINGNAGEPAKLIRQRYREAADIIKKG--KMCCLFINDLDA-GAGRMGGTTQYTVN 236
F +M + AG IR ++EA + +K K +FI+++D G R GG Q+
Sbjct: 140 FVEMYVGVGAGR----IRDLFKEAREKARKASKKSAVIFIDEIDVIGGKRDGG--QHREY 193
Query: 237 NQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 296
+Q +N L ++ G+++ +E PR+ II N L + L+R GR ++
Sbjct: 194 DQTLNQLL---------TEMDGIHS-DEAPRILIIAATNRKEMLDSALLRPGRFDRHIGV 243
Query: 297 --PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
P ++ R+ + N P ++ V L + +S F GA
Sbjct: 244 DLPDKKGRLHILR--LHAANKPLDESVDL-ERIASESFGFSGA 283
>gi|429736552|ref|ZP_19270447.1| ATPase, AAA family [Selenomonas sp. oral taxon 138 str. F0429]
gi|429154849|gb|EKX97560.1| ATPase, AAA family [Selenomonas sp. oral taxon 138 str. F0429]
Length = 524
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 23/164 (14%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA-------KMGINGNAGEPAKLIRQRY 200
++ L +K P + + G G GKS + + A ++ G Q+
Sbjct: 259 RSLLREKGLKSPRGILLVGVPGCGKSLSAKAISANWKLPLYRLDFATVQGSYVGQTEQQL 318
Query: 201 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260
R+A + C L+I++++ G G + V+ +MV L +
Sbjct: 319 RDALTTAENVAPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF--------------W 364
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 302
QE +V ++ T ND S L + L+R GR ++ ++ PT ++R
Sbjct: 365 LQECRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTADER 408
>gi|229173917|ref|ZP_04301455.1| AAA ATPase central domain protein [Bacillus cereus MM3]
gi|228609555|gb|EEK66839.1| AAA ATPase central domain protein [Bacillus cereus MM3]
Length = 331
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 46/197 (23%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINGN-------------AGEPAKLIRQRYREAADIIK 208
L +G G GK+F V + IN N +GE K + + + EA +
Sbjct: 88 LLFYGPPGCGKTFLARAVAGE--INANFIHLELQAILSMWSGEAEKNLHEVFEEA----R 141
Query: 209 KGKMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265
K K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 142 KTKPCILFIDELDAYGGNRQKMGAHHQRTLVNQLL-------------VEMDG--SNSFN 186
Query: 266 PRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED---- 319
V II N + L R GR F P E+R+ + +T + P+ +
Sbjct: 187 EGVYIIGATNTPWYIDPALRRPGRFNSLVFVAPPNNEERLTILE--LKTKDKPRMELQLD 244
Query: 320 -IVKLVDTFPGQSIDFF 335
+ K D F G + +
Sbjct: 245 FVSKYADHFSGADLTYL 261
>gi|380494809|emb|CCF32871.1| 26S protease subunit rpt4 [Colletotrichum higginsianum]
Length = 391
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P R+ + SG+ + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHASGVVTEGEIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|339024984|ref|ZP_08646861.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
tropicalis NBRC 101654]
gi|338750011|dbj|GAA10165.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
tropicalis NBRC 101654]
Length = 515
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
R +EA + + C L+I++++ G GG+ V +M+ L
Sbjct: 312 RLKEALEAADRVAPCVLWIDEIEKGLA-AGGSDSSGVTTRMIGQFLF------------- 357
Query: 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS 307
+ QE RV ++ T ND S L L+R GR ++ ++ P ++R + S
Sbjct: 358 -WLQESQARVFVVATANDVSKLPPELLRRGRFDELFFVDLPGSDERREIIS 407
>gi|298713780|emb|CBJ27152.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 453
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 28/200 (14%)
Query: 138 FMDKVVVHIT-KNFLNLPNVKVPLILGIWGGKGQGKSF-------QCELVFAKMG----I 185
++ VV+ +T K+ + ++ P + + G G GK+ Q + +F K+ +
Sbjct: 205 LIEAVVLPMTHKHMFDNIGIRPPKGILLHGPPGTGKTLLARACAKQTDAIFLKLAGPQLV 264
Query: 186 NGNAGEPAKLIRQRYREAADIIKKGKM--CCLFINDLDA-GAGRMGGTTQYTVNNQMVNA 242
G+ AKL+R + A + K + +FI++LDA G R GG Q
Sbjct: 265 QMFIGDGAKLVRDAFELAKEKCKDQQKGGAIIFIDELDAIGTKRFGGEQSGDREVQRTML 324
Query: 243 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 300
L+N QL G + N ++ +I N L L+R GR+++ P+ E
Sbjct: 325 ELLN--------QLDGFSS---NDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEE 373
Query: 301 DRIGVCSGIFRTDNVPKEDI 320
R + R NV K D+
Sbjct: 374 ARGRILQIHSRKMNVDKSDV 393
>gi|116192555|ref|XP_001222090.1| hypothetical protein CHGG_05995 [Chaetomium globosum CBS 148.51]
gi|88181908|gb|EAQ89376.1| hypothetical protein CHGG_05995 [Chaetomium globosum CBS 148.51]
Length = 391
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + +G+ + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVSKDGEIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|189193421|ref|XP_001933049.1| 26S protease regulatory subunit S10B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330906098|ref|XP_003295352.1| hypothetical protein PTT_00527 [Pyrenophora teres f. teres 0-1]
gi|187978613|gb|EDU45239.1| 26S protease regulatory subunit S10B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311333431|gb|EFQ96552.1| hypothetical protein PTT_00527 [Pyrenophora teres f. teres 0-1]
Length = 393
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 318
+ II+ N TL L+R GR+++ P R + + + S TD + E
Sbjct: 276 --QTKIIMATNRPDTLDPALLRAGRLDRKLEIPLPNEVGRLEILKIHSASVVTDGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 334 SIVKMSDGMNGADL 347
>gi|357137501|ref|XP_003570339.1| PREDICTED: 26S protease regulatory subunit 6A homolog [Brachypodium
distachyon]
Length = 434
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
++ P + ++G G GK+ Q F K+ + G+ AKL+R ++ A
Sbjct: 212 IRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 270
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 271 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 319
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 317
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 320 ---RIKVIAATNRADILDPALLRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 376
Query: 318 EDIVKLVDTFPGQSI 332
E++ + D F G +
Sbjct: 377 EELARSTDDFNGAQL 391
>gi|396457806|ref|XP_003833516.1| similar to 26S protease regulatory subunit S10b [Leptosphaeria
maculans JN3]
gi|312210064|emb|CBX90151.1| similar to 26S protease regulatory subunit S10b [Leptosphaeria
maculans JN3]
Length = 393
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 318
+ II+ N TL L+R GR+++ P R + + + S TD + E
Sbjct: 276 --QTKIIMATNRPDTLDPALLRAGRLDRKLEIPLPNEVGRLEILKIHSASVVTDGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 334 SIVKMSDGMNGADL 347
>gi|170591993|ref|XP_001900754.1| 26S proteasome regulatory chain 4 [Brugia malayi]
gi|158591906|gb|EDP30509.1| 26S proteasome regulatory chain 4, putative [Brugia malayi]
Length = 727
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 164 IWGGKGQGKSFQCELV-------FAKMG----INGNAGEPAKLIRQ-RYREAADIIKKGK 211
++G G GK+ + V F ++ I N+G+ +KL+RQ +RE I ++
Sbjct: 507 LYGEPGTGKTLLAKAVAHSTSATFIRVTGADLIQKNSGDGSKLVRQYSFRELFRIARESV 566
Query: 212 MCCLFINDLDAGAGRMGGTTQYTVN---NQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268
C +FI+++DA GT +Y + V T++ + + QL G E V
Sbjct: 567 PCIIFIDEIDA-----VGTKRYDTTCGGEREVQRTMLELLN-----QLDGF---ESRGDV 613
Query: 269 PIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+I+ N L LIR GR+++ P
Sbjct: 614 KVIMATNRIDVLDPALIRPGRIDRKIELP 642
>gi|253742286|gb|EES99129.1| 26S protease regulatory subunit 7 [Giardia intestinalis ATCC 50581]
Length = 401
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 28/204 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYREAADIIKK------ 209
+K P + ++G G GKS C+ + +GI+ ++LIR+ E+A ++K
Sbjct: 169 IKPPKSILLYGAPGTGKSLICKCLANSLGISYIKCVGSQLIRKYIGESARLVKDLFAYAR 228
Query: 210 -GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268
K C L I+++DA A + + T N++ V+ L+ + ++ G +E+ +
Sbjct: 229 LKKPCLLMIDEVDAIATKR--SDDGTHNDREVDRALLQLL-----TEIDGFTGLDES--I 279
Query: 269 PIIVTGNDFSTLYAPLIRDGRME-----KFYWAPTREDRIGVCS-GIFRTDNVPKEDIVK 322
I+ N L L+R GR + + R + + + S G+ ++V IVK
Sbjct: 280 KIVFCTNRPEALDPALMRPGRCDVKIEIRLPDPAGRYEILKIHSKGLSLGEDVDFAGIVK 339
Query: 323 LVDTFPGQSIDF------FGALRA 340
D F G + GALRA
Sbjct: 340 STDGFNGADLRNIVTEAGLGALRA 363
>gi|449435627|ref|XP_004135596.1| PREDICTED: 26S protease regulatory subunit 6A homolog A-like
[Cucumis sativus]
gi|449525490|ref|XP_004169750.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit 6A
homolog A-like [Cucumis sativus]
Length = 423
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
++ P + ++G G GK+ Q F K+ + G+ AKL+R +A
Sbjct: 201 IRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVR----DAF 256
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
++ K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 257 ELAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 308
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 317
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 309 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 365
Query: 318 EDIVKLVDTFPGQSI 332
E++ + D F G +
Sbjct: 366 EELARSTDDFNGAQL 380
>gi|12697589|dbj|BAB21595.1| Tat binding protein like protein [Brassica rapa]
Length = 424
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
V+ P + ++G G GK+ Q F K+ + G+ AKL+R ++ A
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 260
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 261 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 317
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 318 EDIVKLVDTFPGQSI 332
E++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>gi|3024434|sp|O23894.1|PRS6A_BRACM RecName: Full=26S protease regulatory subunit 6A homolog; AltName:
Full=Tat-binding protein homolog 1; Short=TBP-1
gi|2564337|dbj|BAA22951.1| Tat binding protein 1 [Brassica rapa]
Length = 424
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
V+ P + ++G G GK+ Q F K+ + G+ AKL+R ++ A
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 260
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 261 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 317
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 318 EDIVKLVDTFPGQSI 332
E++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>gi|66809637|ref|XP_638541.1| 26S protease regulatory subunit S10B [Dictyostelium discoideum AX4]
gi|74996881|sp|Q54PJ1.1|PRS10_DICDI RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6
gi|60467149|gb|EAL65185.1| 26S protease regulatory subunit S10B [Dictyostelium discoideum AX4]
Length = 393
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 31/189 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A++IR+ + A
Sbjct: 168 IKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DT 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGV-CSGIFRTDNVPKE 318
+V II+ N L L+R GR+++ P R D + + + I + +V E
Sbjct: 274 LSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYE 333
Query: 319 DIVKLVDTF 327
I KL D F
Sbjct: 334 AIAKLADGF 342
>gi|443709650|gb|ELU04242.1| hypothetical protein CAPTEDRAFT_149757 [Capitella teleta]
Length = 393
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFGYARD----HQP 231
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------KVKMIM 281
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEISLPNEQARMEIMKIHAGPIAKHGEIDWEAVVKLSDD 341
Query: 327 FPGQSI 332
F G +
Sbjct: 342 FNGADL 347
>gi|15230005|ref|NP_187204.1| regulatory particle triple-A ATPase 5A [Arabidopsis thaliana]
gi|297829080|ref|XP_002882422.1| regulatory particle triple-a 5A [Arabidopsis lyrata subsp. lyrata]
gi|75337114|sp|Q9SEI2.1|PS6AA_ARATH RecName: Full=26S protease regulatory subunit 6A homolog A;
AltName: Full=26S proteasome AAA-ATPase subunit RPT5a;
AltName: Full=Proteasome 26S subunit 6A homolog A;
AltName: Full=Regulatory particle triple-A ATPase
subunit 5a; AltName: Full=Tat-binding protein 1 homolog
A; Short=TBP-1 homolog A
gi|6652886|gb|AAF22525.1|AF123394_1 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana]
gi|7596759|gb|AAF64530.1| 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana]
gi|17065258|gb|AAL32783.1| 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana]
gi|297328262|gb|EFH58681.1| regulatory particle triple-a 5A [Arabidopsis lyrata subsp. lyrata]
gi|332640733|gb|AEE74254.1| regulatory particle triple-A ATPase 5A [Arabidopsis thaliana]
Length = 424
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
V+ P + ++G G GK+ Q F K+ + G+ AKL+R ++ A
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 260
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 261 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 317
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 318 EDIVKLVDTFPGQSI 332
E++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>gi|333910254|ref|YP_004483987.1| ATPase AAA [Methanotorris igneus Kol 5]
gi|333750843|gb|AEF95922.1| AAA family ATPase, CDC48 subfamily [Methanotorris igneus Kol 5]
Length = 732
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GE K IR+ +R+A ++ C +F +++D+ A R G V ++VN L
Sbjct: 528 GESEKAIREIFRKA----RQTAPCIIFFDEIDSIAPRRGSGHDSGVTEKVVNQLL----- 578
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGI 309
+L G+ EE V +I N L L+R GR+++ P + + +
Sbjct: 579 ----TELDGL---EEPKDVVVIAATNRPDILDPALLRPGRLDRIVLVPAPDKKARLAIFK 631
Query: 310 FRTDNVPKEDIVKL 323
T +P D V L
Sbjct: 632 VHTRKMPLADDVDL 645
>gi|307151949|ref|YP_003887333.1| AAA ATPase [Cyanothece sp. PCC 7822]
gi|306982177|gb|ADN14058.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7822]
Length = 504
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 44/228 (19%)
Query: 125 LDNTLDGLYI-APAFMDKVVVHITKNFLNLPNVKVPLILGIWG-GK---GQGKSFQCELV 179
LDN D L AF D+ + LP+ + L++GI G GK + S L
Sbjct: 233 LDNLKDWLLRRGGAFSDRARAY------GLPHPRGLLLVGIQGTGKSLTAKAISHHWHLP 286
Query: 180 FAKMGINGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM-----GGTTQYT 234
++ + G R R+ ++ + C L+I+++D + GGTT
Sbjct: 287 LLRLDVGRLFGGLVGESESRTRQMINLAEALAPCVLWIDEIDKAFAGVDGKGDGGTTS-- 344
Query: 235 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 294
V T +N + E+ V ++ T N+ + L ++R GR ++ +
Sbjct: 345 ----RVFGTFIN-------------WLAEKKSPVFVVATANNIAALPPEMLRKGRFDEIF 387
Query: 295 WA--PTREDRIGVCS---GIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
+ PT+E+R+ + S R N+ + DI +L P DF GA
Sbjct: 388 FVGLPTQEERVAIFSVHLSRLRPHNLKQYDINRLAYETP----DFSGA 431
>gi|238488034|ref|XP_002375255.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
flavus NRRL3357]
gi|220700134|gb|EED56473.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
flavus NRRL3357]
Length = 413
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + M N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 318
+ II+ N TL L+R GR+++ P R + + + S + + ++ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQLEGDIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|428780056|ref|YP_007171842.1| AAA ATPase [Dactylococcopsis salina PCC 8305]
gi|428694335|gb|AFZ50485.1| AAA+ family ATPase [Dactylococcopsis salina PCC 8305]
Length = 610
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 43/214 (20%)
Query: 136 PAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKL 195
P +++K+ + TK L + G G GK+ + + +G+N A +++
Sbjct: 109 PQWLEKLGLDATKGVL------------LVGPPGTGKTLTAKALAQSLGVNYIALVGSEI 156
Query: 196 IRQRYREAADIIK-------KGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLM 245
+ + Y EA ++ K C LFI++LD A ++ G + V Q L+
Sbjct: 157 MSKYYGEAEARMRGMFEKAAKNAPCILFIDELDTIAPDRAKVEGEVEKRVVGQ-----LL 211
Query: 246 NIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRI 303
++ D TN P V I+ N + L L R GR ++ + P R DR
Sbjct: 212 SLMDGFTN-----------TPGVVILGATNRPNHLDPALRRPGRFDREVVFGVPDRGDRA 260
Query: 304 GVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
+ + T +P E+ V L D ++ F GA
Sbjct: 261 AILRVL--TAKMPLEETVDL-DEIASLAVGFVGA 291
>gi|415717044|ref|ZP_11466731.1| ATPase [Gardnerella vaginalis 1500E]
gi|388061544|gb|EIK84200.1| ATPase [Gardnerella vaginalis 1500E]
Length = 517
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 30/223 (13%)
Query: 126 DNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF-------QCEL 178
D + GL +++ K I + N P + P + + G G GKS + EL
Sbjct: 234 DYQVGGLSNLKSWLKKREALIKSDLTNSP-LHPPKGVLLCGVPGCGKSLSAKAIAHEWEL 292
Query: 179 VFAKMGINGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238
++ + G REA + C L+I++++ G G + V +
Sbjct: 293 PLYRLDMGSVLGMYVGESESNLREALAAADRVAPCVLWIDEIEKGLSGSNGDSGGGVAKR 352
Query: 239 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-- 296
+V L + QE +V ++ T ND S+L L+R GR ++ ++
Sbjct: 353 LVGQFLF--------------WLQESTSKVFLVATANDVSSLPPELLRKGRFDEIFFVDL 398
Query: 297 PTREDRIGVCSGIFRT------DNVPKEDIVKLVDTFPGQSID 333
PT ++R + F D ++V+L D F G ID
Sbjct: 399 PTEDERAEILRLCFTKYAKVCPDPSLINELVELSDGFAGSDID 441
>gi|257387828|ref|YP_003177601.1| ATPase AAA [Halomicrobium mukohataei DSM 12286]
gi|257170135|gb|ACV47894.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM
12286]
Length = 740
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 40/205 (19%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + N + GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETDANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAP---- 556
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+F ++LD+ A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDSLAPGRGGETGSNVSERVVNQLL---------TELDGLEEMEE---VMVIG 604
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP------KEDIVKLV 324
N + LIR GR ++ P E R + TD+ P ++ ++
Sbjct: 605 ATNRPDMIDPALIRSGRFDRLVMVGEPGIEGREQILK--IHTDDTPLSPDVSLRELAEMT 662
Query: 325 DTFPGQSIDFFG---ALRARVYDDE 346
D + G ++ G A+ A DD+
Sbjct: 663 DGYVGSDLESIGREAAIEALREDDD 687
>gi|374606825|ref|ZP_09679647.1| Vesicle-fusing ATPase [Paenibacillus dendritiformis C454]
gi|374387585|gb|EHQ59085.1| Vesicle-fusing ATPase [Paenibacillus dendritiformis C454]
Length = 505
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 180 FAKMGINGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 239
F +M + AG +L +Q + AA +K + +FI+++D G+ G Q + Q
Sbjct: 145 FVEMFVGVGAGRVRELFKQARQRAAK--EKKQNAVIFIDEIDVIGGKREGGQQREYD-QT 201
Query: 240 VNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 297
+N L ++ G+Y + +PR+ ++ N L + L+R GR ++ P
Sbjct: 202 LNQLL---------TEMDGLY-ADMSPRILVMAATNRKEMLDSALLRPGRFDRHIQVDLP 251
Query: 298 TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337
++ R+ + DN P D V L + ++ F GA
Sbjct: 252 DKKGRLHILK--LHADNKPLADDVDL-ERIADETFSFSGA 288
>gi|295672730|ref|XP_002796911.1| 26S protease regulatory subunit [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226282283|gb|EEH37849.1| 26S protease regulatory subunit [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 354
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 334 SIVKMSDGLNGADL 347
>gi|415883676|ref|ZP_11545705.1| AAA ATPase central domain protein [Bacillus methanolicus MGA3]
gi|387591471|gb|EIJ83788.1| AAA ATPase central domain protein [Bacillus methanolicus MGA3]
Length = 520
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMGINGNAGEPAKLIRQRYREAADIIK 208
++ P + + G G GKS Q L ++ ++ G+ R +EA
Sbjct: 262 IRPPRGILLVGVPGCGKSLSAKAIAAQWNLPLYRLDLSTIHGQYLGQSEARLKEALATAD 321
Query: 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268
C L+I++++ G G + +MV L + ++P RV
Sbjct: 322 HVAPCVLWIDEIEKGLAGAVGGGDGGTSTRMVGQFLYWLQESPA--------------RV 367
Query: 269 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT---RED--RIGVCSGIFRTDNVPK--ED 319
++ T ND S L L+R GR ++ ++ PT RE+ RI + G+ R D P E
Sbjct: 368 FVVATANDVSKLPPELLRRGRFDELFFVDLPTPKEREEIIRIYINKGLKR-DVSPSLLEK 426
Query: 320 IVKLVDTFPGQSID 333
+V+L D F G I+
Sbjct: 427 LVRLSDGFAGADIE 440
>gi|344232542|gb|EGV64421.1| 26S proteasome subunit P45 [Candida tenuis ATCC 10573]
gi|344232543|gb|EGV64422.1| hypothetical protein CANTEDRAFT_114256 [Candida tenuis ATCC 10573]
Length = 414
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 189 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 247
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 248 ---REHSPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 296
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK----- 317
+ +I+ N TL L+R GR+++ P R+ + T N+ K
Sbjct: 297 --QTKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEAGRLEIFK--IHTANIAKHGEFD 352
Query: 318 -EDIVKLVDTFPGQSI 332
E V++ D F G I
Sbjct: 353 FEAAVRMSDGFNGADI 368
>gi|296410824|ref|XP_002835135.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295627910|emb|CAZ79256.1| unnamed protein product [Tuber melanosporum]
Length = 386
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 161 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 219
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 220 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 268
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 269 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAASVSKEGEIDYE 326
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 327 SIVKMSDQLNGADL 340
>gi|432330935|ref|YP_007249078.1| 26S proteasome subunit P45 family [Methanoregula formicicum SMSP]
gi|432137644|gb|AGB02571.1| 26S proteasome subunit P45 family [Methanoregula formicicum SMSP]
Length = 436
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 248
GE A+L+R+ + D+ KK +FI+++DA GA R T T ++ V TLM +
Sbjct: 254 GEGARLVRELF----DLAKKKAPTIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL- 305
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
L GM E V II N L L+R GR ++ P
Sbjct: 306 -------LAGMDGFENRGDVKIIGATNRIDILDKALLRPGRFDRIIEIP 347
>gi|221060877|ref|XP_002262008.1| 26S proteasome regulatory subunit 7 [Plasmodium knowlesi strain H]
gi|193811158|emb|CAQ41886.1| 26S proteasome regulatory subunit 7, putative [Plasmodium knowlesi
strain H]
Length = 441
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 189 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 248
GE A+++R+ ++ A K K C LFI+++DA G G + + + V T++ I
Sbjct: 237 VGEGARMVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIV 290
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
+ QL G N+ + +++ N TL + L+R GR+++
Sbjct: 291 N-----QLDGFDNRGN---IKVLMATNRPDTLDSALVRPGRIDR 326
>gi|160331227|ref|XP_001712321.1| prsS6 [Hemiselmis andersenii]
gi|159765768|gb|ABW97996.1| prsS6 [Hemiselmis andersenii]
Length = 375
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 33/181 (18%)
Query: 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV-------FAKMG----INGNAGEPAK 194
I KNF + +P + ++G G GK+ + V F K + GE K
Sbjct: 149 INKNFYEKIGIDLPKGVMLFGPPGTGKTLVVKAVALKTKASFIKTAGSEFVQKYLGEGPK 208
Query: 195 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254
++R ++ I +K +FI+++DA A R T ++ V LM + +
Sbjct: 209 MVRDLFK----IARKNSPSIVFIDEIDAIATRRFDAQ--TGADREVQRILMELLN----- 257
Query: 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK---FYWAPTREDRIGVCSGIFR 311
Q+ G EEN V +I+ N TL L+R GR+++ F RE R IF+
Sbjct: 258 QMDGF---EENKNVRVIMATNRIDTLDPALLRPGRIDRKIGFPLPNRREKRF-----IFQ 309
Query: 312 T 312
T
Sbjct: 310 T 310
>gi|167396253|ref|XP_001741976.1| 26S protease regulatory subunit S10B [Entamoeba dispar SAW760]
gi|165893172|gb|EDR21512.1| 26S protease regulatory subunit S10B, putative [Entamoeba dispar
SAW760]
Length = 391
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 25/148 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF---------QCEL--VFAKMGINGNAGEPAKLIRQRYREAA 204
VK P + ++G G GK+ +C+ V A ++ GE A+LIR+ + A
Sbjct: 166 VKAPKGVLLYGPPGTGKTLLARALASNLECQFLKVVASGIVDKYLGESARLIREMFAYAR 225
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA AG+ + +++ + TLM + L M E
Sbjct: 226 D----HQPCVIFMDEIDAIAGKR--IAEGIHSDREIQRTLMEL--------LAQMDGFNE 271
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
+V II+ N L L+R GR+++
Sbjct: 272 ISKVKIIMATNRPDVLDPALMRPGRLDR 299
>gi|357117120|ref|XP_003560322.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Brachypodium distachyon]
Length = 373
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 25/146 (17%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + M +N GE A++IR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNMDVNFMKVVSSAILDKYIGESARMIREMFTYAR 230
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + QL G + E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLH-----QLDGFH---E 276
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRM 290
+V +I+ N L L+R GR+
Sbjct: 277 LGKVKVIMATNRPDVLDPALLRPGRL 302
>gi|341583068|ref|YP_004763560.1| cell division protein CDC48 [Thermococcus sp. 4557]
gi|340810726|gb|AEK73883.1| cell division protein CDC48 [Thermococcus sp. 4557]
Length = 795
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 28/171 (16%)
Query: 164 IWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + + I G GE K IR+ +R+A ++
Sbjct: 555 LYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIREIFRKA----RQAAP 610
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+FI+++DA A R G + V ++++N L M +EN V +I
Sbjct: 611 TVIFIDEIDAIAPRRGTDVNH-VTDRLINQLLTE------------MDGIQENSGVVVIA 657
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 323
N + L+R GR ++ P +++ + T NVP + V+L
Sbjct: 658 ATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLAEDVRL 708
>gi|327403994|ref|YP_004344832.1| hypothetical protein Fluta_2008 [Fluviicola taffensis DSM 16823]
gi|327319502|gb|AEA43994.1| hypothetical protein Fluta_2008 [Fluviicola taffensis DSM 16823]
Length = 731
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/21 (76%), Positives = 17/21 (80%)
Query: 440 GCTDPAAANYDPTARSDDGSC 460
GCTDP A NYDPTA +DGSC
Sbjct: 617 GCTDPLAVNYDPTAVLNDGSC 637
>gi|389586053|dbj|GAB68782.1| 26S proteasome ATPase subunit [Plasmodium cynomolgi strain B]
Length = 420
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 189 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 248
GE A+++R+ ++ A K K C LFI+++DA G G + + + V T++ I
Sbjct: 237 VGEGARMVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIV 290
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
+ QL G N+ + +++ N TL + L+R GR+++
Sbjct: 291 N-----QLDGFDNRGN---IKVLMATNRPDTLDSALVRPGRIDR 326
>gi|452980453|gb|EME80214.1| hypothetical protein MYCFIDRAFT_156006 [Pseudocercospora fijiensis
CIRAD86]
Length = 391
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ V S + + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEAGRLEVLKIHASSVQKEGEIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|302414582|ref|XP_003005123.1| 26S protease regulatory subunit S10B [Verticillium albo-atrum
VaMs.102]
gi|261356192|gb|EEY18620.1| 26S protease regulatory subunit S10B [Verticillium albo-atrum
VaMs.102]
Length = 361
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKIVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + +G+ + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVITDGEIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|71650243|ref|XP_813823.1| 26S protease regulatory subunit [Trypanosoma cruzi strain CL
Brener]
gi|70878744|gb|EAN91972.1| 26S protease regulatory subunit, putative [Trypanosoma cruzi]
gi|407849865|gb|EKG04448.1| 26S protease regulatory subunit, putative,serine peptidase, Clan
SJ, family S16, putative [Trypanosoma cruzi]
Length = 398
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 87/184 (47%), Gaps = 34/184 (18%)
Query: 164 IWGGKGQGKSFQCEL-----------VFAKMGINGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V A ++ GE A+++R+ + A ++ +
Sbjct: 181 LYGPPGTGKTLLAKAIASNVDAAFLKVVASSIVDKYIGESARVVREMFAYA----REHEP 236
Query: 213 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
C +FI+++DA G R+ GT+ +++ + TLM + QL G ++ +V +I
Sbjct: 237 CIIFIDEVDAIGGKRIDGTS----SDREIQRTLMELL-----YQLDGF---DKLGKVKVI 284
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVD 325
+ N TL + L+R GR+++ P R+ V S + + ++ + +VKL +
Sbjct: 285 MATNRPDTLDSALMRPGRLDRKIEIGLPNEAGRLDVLKIHASKLTKQGDIDYDSLVKLSE 344
Query: 326 TFPG 329
F G
Sbjct: 345 GFNG 348
>gi|340546049|gb|AEK51823.1| proteasome 26S ATPase subunit 6 [Alligator mississippiensis]
gi|402697414|gb|AFQ90895.1| proteasome 26S subunit ATPase 6, partial [Chrysemys picta]
gi|402697420|gb|AFQ90898.1| proteasome 26S subunit ATPase 6, partial [Testudo hermanni]
Length = 217
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 25/140 (17%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 76 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 131
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 132 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 181
Query: 273 TGNDFSTLYAPLIRDGRMEK 292
N TL L+R GR+++
Sbjct: 182 ATNRPDTLDPALLRPGRLDR 201
>gi|227830675|ref|YP_002832455.1| AAA ATPase [Sulfolobus islandicus L.S.2.15]
gi|229579582|ref|YP_002837981.1| AAA ATPase [Sulfolobus islandicus Y.G.57.14]
gi|284998202|ref|YP_003419969.1| ATPase AAA [Sulfolobus islandicus L.D.8.5]
gi|227457123|gb|ACP35810.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
gi|228010297|gb|ACP46059.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
Y.G.57.14]
gi|284446097|gb|ADB87599.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
Length = 759
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 39/212 (18%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAA 204
++ P + ++G G GK+ + V + G N A GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ C +F +++D+ A G T V ++VN L ++ G+ Q
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGI--QSL 601
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 318
N RV +I N L L+R GR ++ + P ++ RI + +T +V E
Sbjct: 602 N-RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE 660
Query: 319 DIVKLVDTFPGQSIDFFG------ALRARVYD 344
++ K ++ + G I+ LR + Y+
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYE 692
>gi|156102703|ref|XP_001617044.1| 26S proteasome ATPase subunit [Plasmodium vivax Sal-1]
gi|148805918|gb|EDL47317.1| 26S proteasome ATPase subunit, putative [Plasmodium vivax]
Length = 420
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 189 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 248
GE A+++R+ ++ A K K C LFI+++DA G G + + + V T++ I
Sbjct: 237 VGEGARMVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIV 290
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
+ QL G N+ + +++ N TL + L+R GR+++
Sbjct: 291 N-----QLDGFDNRGN---IKVLMATNRPDTLDSALVRPGRIDR 326
>gi|407034780|gb|EKE37391.1| ATPase, AAA family protein [Entamoeba nuttalli P19]
Length = 622
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 95/224 (42%), Gaps = 36/224 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
V P + ++G G GK++ +C+ F + +N GE + +RQ + A
Sbjct: 377 VDTPAGILLYGPPGCGKTYCAKALANECKANFIAVKGPQLLNKYVGEAERAVRQLFMRA- 435
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
+ C +F ++LDA A + + +++VN L +L GM +++
Sbjct: 436 ---RNSAPCVIFFDELDALAPKRSEDSSGV--SRIVNQLL---------TELDGMDVRKD 481
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVK 322
V ++ N + ++R GR+++ P R+ R+ + I + VP D V
Sbjct: 482 ---VFVVAATNRPDCIDPAMLRPGRLDRLISVDLPNRDARVDILKTICKRQKVPLADSVN 538
Query: 323 LVDTFPGQSID-FFGA-LRARVYDDEVR---KWISEVGIERIGK 361
L +D F GA L A V + VR + + +VG E K
Sbjct: 539 LEKIARSAQVDGFSGADLTALVKEASVRALDEIVKKVGYENAQK 582
>gi|225680854|gb|EEH19138.1| 26S protease regulatory subunit S10B [Paracoccidioides brasiliensis
Pb03]
Length = 382
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 157 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 215
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + QL G +
Sbjct: 216 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DY 262
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 263 LGKTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 322
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 323 SIVKMSDGLNGADL 336
>gi|229581753|ref|YP_002840152.1| AAA ATPase [Sulfolobus islandicus Y.N.15.51]
gi|228012469|gb|ACP48230.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
Y.N.15.51]
Length = 759
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 39/212 (18%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAA 204
++ P + ++G G GK+ + V + G N A GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ C +F +++D+ A G T V ++VN L ++ G+ Q
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGI--QSL 601
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 318
N RV +I N L L+R GR ++ + P ++ RI + +T +V E
Sbjct: 602 N-RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE 660
Query: 319 DIVKLVDTFPGQSIDFFG------ALRARVYD 344
++ K ++ + G I+ LR + Y+
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYE 692
>gi|224073510|ref|XP_002195238.1| PREDICTED: torsin-1A [Taeniopygia guttata]
Length = 360
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
Q +LDN L G ++ + KVVV + FLN N K PL L + G G GK+F ++V
Sbjct: 90 QGNLDNRLFGQHL----VSKVVVKAVRGFLNNTNAKKPLALSLHGWTGTGKNFVSKIV 143
>gi|227827953|ref|YP_002829733.1| ATPase AAA [Sulfolobus islandicus M.14.25]
gi|229585220|ref|YP_002843722.1| AAA ATPase [Sulfolobus islandicus M.16.27]
gi|238620179|ref|YP_002915005.1| ATPase AAA [Sulfolobus islandicus M.16.4]
gi|385773657|ref|YP_005646223.1| AAA ATPase [Sulfolobus islandicus HVE10/4]
gi|385776292|ref|YP_005648860.1| AAA ATPase [Sulfolobus islandicus REY15A]
gi|227459749|gb|ACP38435.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25]
gi|228020270|gb|ACP55677.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
gi|238381249|gb|ACR42337.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
gi|323475040|gb|ADX85646.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
gi|323477771|gb|ADX83009.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
Length = 759
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 89/212 (41%), Gaps = 39/212 (18%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAA 204
++ P + ++G G GK+ + V + G N A GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ C +F +++D+ A G T V ++VN L ++ G+ +
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 602
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 318
RV +I N L L+R GR ++ + P ++ RI + +T +V E
Sbjct: 603 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE 660
Query: 319 DIVKLVDTFPGQSIDFFG------ALRARVYD 344
++ K ++ + G I+ LR + Y+
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYE 692
>gi|169769649|ref|XP_001819294.1| 26S protease subunit rpt4 [Aspergillus oryzae RIB40]
gi|83767153|dbj|BAE57292.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391863488|gb|EIT72796.1| 26S proteasome regulatory complex, ATPase RPT4 [Aspergillus oryzae
3.042]
Length = 393
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + M N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 318
+ II+ N TL L+R GR+++ P R + + + S + + ++ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQLEGDIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|407043371|gb|EKE41914.1| 26S protease regulatory subunit, putative [Entamoeba nuttalli P19]
Length = 391
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 25/148 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF---------QCEL--VFAKMGINGNAGEPAKLIRQRYREAA 204
VK P + ++G G GK+ +C V A ++ GE A+LIR+ + A
Sbjct: 166 VKAPKGVLLYGPPGTGKTLLARALASNLECHFLKVVASGIVDKYLGESARLIREMFAYAR 225
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA AG+ + +++ + TLM + L M E
Sbjct: 226 D----HQPCVIFMDEIDAIAGKR--IAEGIHSDREIQRTLMEL--------LAQMDGFNE 271
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
+V II+ N L L+R GR+++
Sbjct: 272 ISKVKIIMATNRPDVLDPALMRPGRLDR 299
>gi|346321012|gb|EGX90612.1| proteasome regulatory particle subunit Rpt4 [Cordyceps militaris
CM01]
Length = 448
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSF-----QCEL------VFAKMGINGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ C L V + ++ GE A+LIR+ + A
Sbjct: 223 IKPPKGVLLYGPPGTGKTLLARAVACSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 281
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 282 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 330
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + +G+ ++ E
Sbjct: 331 --KTKIIMATNRPDTLDPALLRAGRLDRKLEIPLPNEVGRLEILKIHAAGVCLDGDIDFE 388
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 389 SVVKMSDGLNGADL 402
>gi|302662898|ref|XP_003023099.1| hypothetical protein TRV_02789 [Trichophyton verrucosum HKI 0517]
gi|291187077|gb|EFE42481.1| hypothetical protein TRV_02789 [Trichophyton verrucosum HKI 0517]
Length = 412
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GE A+LIR+ + A K+ + C +F++++DA GR ++ T ++ + TLM + +
Sbjct: 232 GESARLIREMFAYA----KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 285
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV-- 305
G + II+ N TL L+R GR+++ P + R+ V
Sbjct: 286 QLDGFDYLG--------KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLK 337
Query: 306 --CSGIFRTDNVPKEDIVKLVDTFPGQSI 332
SG+ + E IVK+ D G +
Sbjct: 338 IHASGVSMEGEIDFETIVKMSDGLNGADL 366
>gi|83314741|ref|XP_730492.1| 26s protease regulatory subunit s10b [Plasmodium yoelii yoelii
17XNL]
gi|23490230|gb|EAA22057.1| 26s protease regulatory subunit s10b (p44) (conserved atpase domain
protein 44). [thirteen-lined ground squirrel]
[Plasmodium yoelii yoelii]
Length = 393
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSSIVDKYIGESARIIREMFTYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
V II+ N L L+R GR+++ P
Sbjct: 274 LGNVKIIMATNRPDVLDPALVRPGRLDRKIEIP 306
>gi|346979381|gb|EGY22833.1| 26S protease subunit RPT4 [Verticillium dahliae VdLs.17]
Length = 373
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V + + N GE A+LIR+ + A K+ +
Sbjct: 156 LYGPPGTGKTLLARAVASSLETNFLKIVSSAIVDKYIGESARLIREMFGYA----KEHEP 211
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G + II+
Sbjct: 212 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG--------KTKIIM 261
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + +G+ + E +VK+ D
Sbjct: 262 ATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVITDGEIDFESVVKMSDG 321
Query: 327 FPGQSI 332
G +
Sbjct: 322 LNGADL 327
>gi|297297857|ref|XP_001099493.2| PREDICTED: 26S protease regulatory subunit S10B-like, partial
[Macaca mulatta]
Length = 352
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 25/140 (17%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 273 TGNDFSTLYAPLIRDGRMEK 292
N TL L+R GR+++
Sbjct: 292 ATNRPDTLDPALLRPGRLDR 311
>gi|126140372|ref|XP_001386708.1| 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal
cap subunit) [Scheffersomyces stipitis CBS 6054]
gi|126093992|gb|ABN68679.1| 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal
cap subunit) [Scheffersomyces stipitis CBS 6054]
Length = 416
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 25/148 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A+LIR+ + A
Sbjct: 191 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 249
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 250 ---REHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 298
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
+ +I+ N TL L+R GR+++
Sbjct: 299 --QTKVIMATNRPDTLDPALLRAGRLDR 324
>gi|449454065|ref|XP_004144776.1| PREDICTED: 26S protease regulatory subunit 6A homolog A-like
[Cucumis sativus]
Length = 423
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
++ P + ++G G GK+ Q F K+ + G+ AKL+R ++ A
Sbjct: 201 IRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 259
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 260 ---KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 308
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 317
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 309 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARIMQIHSRKMNVHPDVNF 365
Query: 318 EDIVKLVDTFPGQSI 332
E++ + D F G +
Sbjct: 366 EELARSTDDFNGAQL 380
>gi|259484776|tpe|CBF81287.1| TPA: hypothetical protein similar to PSMC6 subunit (Broad)
[Aspergillus nidulans FGSC A4]
Length = 393
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + M N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 318
+ II+ N TL L+R GR+++ P R + + + S + + ++ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQMEGDIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|228991900|ref|ZP_04151836.1| AAA ATPase central domain protein [Bacillus pseudomycoides DSM
12442]
gi|228998014|ref|ZP_04157615.1| AAA ATPase central domain protein [Bacillus mycoides Rock3-17]
gi|229005571|ref|ZP_04163281.1| AAA ATPase central domain protein [Bacillus mycoides Rock1-4]
gi|228755671|gb|EEM05006.1| AAA ATPase central domain protein [Bacillus mycoides Rock1-4]
gi|228761747|gb|EEM10692.1| AAA ATPase central domain protein [Bacillus mycoides Rock3-17]
gi|228767629|gb|EEM16256.1| AAA ATPase central domain protein [Bacillus pseudomycoides DSM
12442]
Length = 318
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 42/195 (21%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKG 210
L +G G GK+F V ++ N GE K + + + EA ++
Sbjct: 75 LLFYGPPGCGKTFLARAVAGEIDANFIHLELQAILSMWTGESEKNLHEIFEEA----RRT 130
Query: 211 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 131 KPCILFIDELDAFGGNRQKMGSHHQRTLVNQLL-------------VEMDG--SNSFNEG 175
Query: 268 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 320
V II N + L R GR F PT E+R+ + +T + PK + +
Sbjct: 176 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPTYEERLTILD--LKTKDKPKTELQLDLV 233
Query: 321 VKLVDTFPGQSIDFF 335
K + F G + +
Sbjct: 234 AKYAEHFSGADLTYL 248
>gi|296005359|ref|XP_001349843.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
falciparum 3D7]
gi|225631944|emb|CAD52250.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
falciparum 3D7]
Length = 420
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 189 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 248
GE A+++R+ ++ A K K C LFI+++DA G G + + + V T++ I
Sbjct: 237 VGEGARMVRELFQMA----KSKKACILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIV 290
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
+ QL G N+ + +++ N TL + L+R GR+++
Sbjct: 291 N-----QLDGFDNR---GNIKVLMATNRPDTLDSALVRPGRIDR 326
>gi|229085940|ref|ZP_04218164.1| AAA ATPase central domain protein [Bacillus cereus Rock3-44]
gi|228697376|gb|EEL50137.1| AAA ATPase central domain protein [Bacillus cereus Rock3-44]
Length = 311
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 42/195 (21%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKG 210
L +G G GK+F V ++ N GE K + + + EA ++
Sbjct: 68 LLFYGPPGCGKTFLARAVAGEIDANFIHLELQAILSMWTGESEKNLHEIFEEA----RRT 123
Query: 211 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 124 KPCILFIDELDAFGGNRQKMGSHHQRTLVNQLL-------------VEMDG--SNSFNEG 168
Query: 268 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 320
V II N + L R GR F PT E+R+ + +T + PK + +
Sbjct: 169 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPTYEERLTILD--LKTKDKPKAELQLDMV 226
Query: 321 VKLVDTFPGQSIDFF 335
K + F G + +
Sbjct: 227 AKYAEHFSGADLTYL 241
>gi|119775936|ref|YP_928676.1| AAA ATPase [Shewanella amazonensis SB2B]
gi|119768436|gb|ABM01007.1| ATPase, AAA family [Shewanella amazonensis SB2B]
Length = 490
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 41/207 (19%)
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNL------PNVKVP-----LILGIWG-- 166
R +D L Y +F D +H K +L P P L+LG+ G
Sbjct: 214 FRLMDMDGVLRYEYDTSSFSDIAGLHNLKEWLKARAPELSPQSSAPPPKGILLLGVQGSG 273
Query: 167 ----GKGQGKSFQCELVFAKMGI--NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 220
K ++Q L+ M N GE K +RQ E AD++ C L+++++
Sbjct: 274 KSLAAKAVAGAWQRPLLRLDMAALYNKYIGETEKNLRQAL-ELADLMSP---CVLWVDEI 329
Query: 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 280
+ G + G++ +Q + TL+ + E V ++ T ND L
Sbjct: 330 EKG---ISGSSSDEGTSQRILGTLLT-------------WMAERKSDVFLVATANDIQAL 373
Query: 281 YAPLIRDGRMEKFYWA--PTREDRIGV 305
L+R GRM++ ++ P E R +
Sbjct: 374 PPELMRKGRMDEIFFVDLPDEEIRKAI 400
>gi|288930616|ref|YP_003434676.1| ATPase AAA, CDC48 subfamily [Ferroglobus placidus DSM 10642]
gi|288892864|gb|ADC64401.1| AAA family ATPase, CDC48 subfamily [Ferroglobus placidus DSM 10642]
Length = 791
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V + + + G GE K +R+ +R+A
Sbjct: 544 IKPPKGILLYGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKAR 603
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
+ C LF +++D+ A R G V ++V+ L +L G+ EE
Sbjct: 604 QVAP----CVLFFDEIDSLAPRRGTGGDTHVTERVVSQLL---------TELDGL---EE 647
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV------CSGIFRTDNVPKE 318
V +I N + L+R GR+E+ + P +++ + G+ ++V E
Sbjct: 648 LKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDEKARLEIFKIHTRGMPLDEDVNLE 707
Query: 319 DIVKLVDTFPGQSID 333
++ K + + G I+
Sbjct: 708 ELAKKTEGYSGADIE 722
>gi|385804130|ref|YP_005840530.1| AAA ATPase [Haloquadratum walsbyi C23]
gi|339729622|emb|CCC40894.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi C23]
Length = 765
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 44/214 (20%)
Query: 155 NVKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREA 203
N P ++G G GK+ + E+ F ++ ++ GE K +R+ + A
Sbjct: 521 NTDPPTGALLYGPPGTGKTLLARAIAGEAEINFVEVAGPELLDRYVGESEKAVREVFERA 580
Query: 204 ADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 262
++ +F +++DA A R GG T V +++V+ L + D T+
Sbjct: 581 ----RQAAPAIIFFDEIDAVAANRAGGGTDSGVGDRVVSQLLTEL-DRITD--------- 626
Query: 263 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED---RIGV----CSGIFRTDNV 315
+P + ++ N T+ + L+R GR+E P R D R + +G DN+
Sbjct: 627 --HPNLVVLAATNRRDTIDSALLRPGRLESHIAVP-RPDAAARRAILEIHLAGKPLADNI 683
Query: 316 PKEDIVKLVDTFPGQSIDFFGA-LRARVYDDEVR 348
++++V G++ + GA + A V D VR
Sbjct: 684 DRDELV-------GKTAGYVGADIEAMVRDASVR 710
>gi|110668654|ref|YP_658465.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
walsbyi DSM 16790]
gi|109626401|emb|CAJ52861.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi DSM 16790]
Length = 765
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 44/205 (21%)
Query: 164 IWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + E+ F ++ ++ GE K +R+ + A ++
Sbjct: 530 LYGPPGTGKTLLARAIAGEAEINFVEVAGPELLDRYVGESEKAVREVFERA----RQAAP 585
Query: 213 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
+F +++DA A R GG T V +++V+ L + D T+ +P + ++
Sbjct: 586 AIIFFDEIDAVAANRAGGGTDSGVGDRVVSQLLTEL-DRITD-----------HPNLVVL 633
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWAPTRED---RIGV----CSGIFRTDNVPKEDIVKLV 324
N T+ + L+R GR+E P R D R + +G DN+ ++++V
Sbjct: 634 AATNRRDTIDSALLRPGRLESHIAVP-RPDAAARRAILEIHLAGKPLADNIDRDELV--- 689
Query: 325 DTFPGQSIDFFGA-LRARVYDDEVR 348
G++ + GA + A V D VR
Sbjct: 690 ----GKTAGYVGADIEAMVRDASVR 710
>gi|51209844|ref|YP_063508.1| Ycf46 [Gracilaria tenuistipitata var. liui]
gi|75120536|sp|Q6B952.1|YCF46_GRATL RecName: Full=Uncharacterized AAA domain-containing protein ycf46
gi|50657598|gb|AAT79583.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata
var. liui]
Length = 491
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 93/226 (41%), Gaps = 31/226 (13%)
Query: 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF-------Q 175
YS DN + GL + +++K +K N + VP + + G +G GKS Q
Sbjct: 226 YSFDN-VGGLNVLKDWLNKRSKAFSKQAKNY-GLTVPKGILLIGIQGTGKSLIAKAISGQ 283
Query: 176 CELVFAKMGINGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTV 235
L K+ + +R R ++ C L+I+++D R+ T
Sbjct: 284 WNLPLLKLDMGKIFASLVGQSEERMRHMIKTAEQSSPCILWIDEIDKCFTRLNNYTDSGT 343
Query: 236 NNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 295
N ++++ L ++ E+ V +I T N +L + L+R GR ++ ++
Sbjct: 344 NGRVLSTMLTWLS--------------EKKKPVFVIATANQVLSLPSELLRKGRFDEIFF 389
Query: 296 --APTREDR---IGVCSGIFRTDNVPKEDI---VKLVDTFPGQSID 333
P+ E+R + FR + K DI KL D F G I+
Sbjct: 390 LNLPSLEEREKIFQIHLMKFRPLSWRKYDIKYLSKLTDQFSGAEIE 435
>gi|213404048|ref|XP_002172796.1| 19S proteasome regulatory subunit Rpt5 [Schizosaccharomyces
japonicus yFS275]
gi|212000843|gb|EEB06503.1| 19S proteasome regulatory subunit Rpt5 [Schizosaccharomyces
japonicus yFS275]
Length = 439
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 33/192 (17%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
+K P ++G G GK+ Q F K+ + G+ AKL+R +A
Sbjct: 217 IKPPKGALMYGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVR----DAF 272
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
+ K+ +FI++LDA G R ++ V T++ + + QL G + +
Sbjct: 273 ALAKEKSPAIIFIDELDAIGTKRFDSEK---AGDREVQRTMLELLN-----QLDGFSSDD 324
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFR----TDNVPK 317
RV +I N TL L+R GR+++ + P E R+G+ R D++
Sbjct: 325 ---RVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMTVADDINW 381
Query: 318 EDIVKLVDTFPG 329
E++ + D + G
Sbjct: 382 EELARSTDEYNG 393
>gi|315230875|ref|YP_004071311.1| cell division protein FtsH [Thermococcus barophilus MP]
gi|315183903|gb|ADT84088.1| cell division protein FtsH [Thermococcus barophilus MP]
Length = 834
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 164 IWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + +GI G GE K IR+ +R+A ++
Sbjct: 584 LYGPPGTGKTMLAKAVATESEANFIGIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 639
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+FI+++DA A M G+ V ++++N L M EEN V +I
Sbjct: 640 TVVFIDEIDAIAP-MRGSDVNRVTDRIINQLLTE------------MDGLEENSGVVVIA 686
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 302
N L L+R GR ++ P +++
Sbjct: 687 ATNRPDILDPALLRPGRFDRLILVPAPDEK 716
>gi|125544662|gb|EAY90801.1| hypothetical protein OsI_12403 [Oryza sativa Indica Group]
Length = 200
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 368 EGPPT--FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDAN--DDAIKNG 423
+GP T F PK L+K L + + ++ N R D+ A D N + + G
Sbjct: 102 DGPYTLKFRVPKPWLNKPLSFFNEGLADELN--REGACDR----AIFPDENVVITSCEMG 155
Query: 424 SFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSC 460
S+Y + + K+ + GC DP + +DP A DDGSC
Sbjct: 156 SYYEEGGDRCKLDIVSGCMDPNSHMFDPLATVDDGSC 192
>gi|336121896|ref|YP_004576671.1| proteasome-activating nucleotidase [Methanothermococcus okinawensis
IH1]
gi|334856417|gb|AEH06893.1| Proteasome-activating nucleotidase [Methanothermococcus okinawensis
IH1]
Length = 408
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 27/179 (15%)
Query: 164 IWGGKGQGKSFQCELV-------FAKMG----INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V F K+ + GE AKL++ ++ A K+
Sbjct: 188 LYGPPGTGKTLLAKAVAHETNASFIKIVGSELVKKFIGEGAKLVKDVFKLA----KEKAP 243
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +FI+++DA A R T T ++ V TLM + L M E V II
Sbjct: 244 CIIFIDEIDAVASRR--TESLTGGDREVQRTLMQL--------LAEMDGFESKGDVKIIA 293
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 329
N L ++R GR ++ AP+ E R+ + + N+ D+ K+ G
Sbjct: 294 ATNRPDILDPAILRPGRFDRIIEVPAPSEEGRLEILKIHTKNMNLKHVDLKKIAKMTEG 352
>gi|440634793|gb|ELR04712.1| 26S protease subunit rpt4 [Geomyces destructans 20631-21]
Length = 390
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASGLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + +G+ + E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEIMKIHAAGVVTEGEIDFE 330
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|327404755|ref|YP_004345593.1| hypothetical protein Fluta_2775 [Fluviicola taffensis DSM 16823]
gi|327320263|gb|AEA44755.1| hypothetical protein Fluta_2775 [Fluviicola taffensis DSM 16823]
Length = 377
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 439 EGCTDPAAANYDPTARSDDGSCNYQ 463
GCTDP A+NY+ A+ D+GSC Y+
Sbjct: 23 SGCTDPNASNYNSKAKKDNGSCTYE 47
>gi|393232408|gb|EJD39990.1| 26S proteasome subunit P45 [Auricularia delicata TFB-10046 SS5]
Length = 373
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V A + N GE A+++R+ + A D +
Sbjct: 157 LYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYARD----HEP 212
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G + R +I+
Sbjct: 213 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKLIM 262
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + ++ ++ + +VKL D
Sbjct: 263 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKPVSKSGDIDYDAVVKLSDG 322
Query: 327 FPGQSI 332
F G +
Sbjct: 323 FNGADL 328
>gi|70991445|ref|XP_750571.1| proteasome regulatory particle subunit Rpt4 [Aspergillus fumigatus
Af293]
gi|66848204|gb|EAL88533.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
fumigatus Af293]
gi|159124127|gb|EDP49245.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
fumigatus A1163]
Length = 393
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + M N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIP 306
>gi|390961725|ref|YP_006425559.1| cell division protein containing CDC48 domain 1 [Thermococcus sp.
CL1]
gi|390520033|gb|AFL95765.1| cell division protein containing CDC48 domain 1 [Thermococcus sp.
CL1]
Length = 795
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQ 198
FL L + P + ++G G GK+ + V + + I G GE K IR+
Sbjct: 542 FLGL-GITPPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIRE 600
Query: 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
+R+A ++ +FI+++DA A R G T V ++++N L
Sbjct: 601 IFRKA----RQAAPTVIFIDEIDAIAPRRG-TDVNRVTDRLINQLLTE------------ 643
Query: 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 318
M +EN V +I N + L+R GR ++ P +++ + T NVP
Sbjct: 644 MDGIQENSGVVVIGATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLA 703
Query: 319 DIVKL 323
+ VKL
Sbjct: 704 EDVKL 708
>gi|389860481|ref|YP_006362720.1| AAA ATPase [Thermogladius cellulolyticus 1633]
gi|388525384|gb|AFK50582.1| AAA family ATPase, CDC48 subfamily [Thermogladius cellulolyticus
1633]
Length = 739
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 46/245 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + G N A GE K +R+ +R A +
Sbjct: 502 LYGPPGTGKTLLAKAVATESGANFIAIRGPEVLSKWVGESEKAVREVFRRARQVAP---- 557
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F +++D+ A G V +++VN L +L G+ +V +I
Sbjct: 558 CVVFFDEIDSIAPARGARYDSGVTDRIVNQLL---------TELDGIQPLR---KVVVIA 605
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 326
N L L+R GR ++ + P + + + T VP E++ +L +
Sbjct: 606 ATNRPDILDPALLRPGRFDRLVYVPPPDYKARLEIFKVHTRRVPLASDVNLEELARLTEG 665
Query: 327 FPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFE--QPKMTLDKLL 384
+ G I VR+ + ER+ R V K E +P +T +++
Sbjct: 666 YTGADIAAV-----------VREAVMLALRERLEARPVEMKYFLKALEVVKPSLTKEQIE 714
Query: 385 EYGRM 389
EY R+
Sbjct: 715 EYERL 719
>gi|443316542|ref|ZP_21045982.1| AAA+ family ATPase [Leptolyngbya sp. PCC 6406]
gi|442783845|gb|ELR93745.1| AAA+ family ATPase [Leptolyngbya sp. PCC 6406]
Length = 510
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 85/197 (43%), Gaps = 31/197 (15%)
Query: 151 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLI-------RQRYREA 203
NLP + LI+GI +G GKS + + + + + +L + +R A
Sbjct: 276 FNLPTPRGILIVGI---QGCGKSLAAKTIAREWSMPLLKLDAGRLYDKYIGESEKNFRRA 332
Query: 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
+ + L+I++++ G+ + ++ ++ + L + QE
Sbjct: 333 VTLAETMAPAILWIDEIEKSMGQSDSDSDGGLSRRLFGSFLT--------------WLQE 378
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS-GIFRTDNVPKE-- 318
++ V ++ T ND S + L+R GR ++ ++ P ++R+G+ + R P+
Sbjct: 379 KSEEVFVVATANDLSRIPPELLRKGRFDEIFFVDLPDEQERVGILQIHLIRRKQDPRRFD 438
Query: 319 --DIVKLVDTFPGQSID 333
+V++ D + G I+
Sbjct: 439 LPTLVQVTDGYSGAEIE 455
>gi|452988056|gb|EME87811.1| hypothetical protein MYCFIDRAFT_184697 [Pseudocercospora fijiensis
CIRAD86]
Length = 711
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 25/139 (17%)
Query: 139 MDKVVVHITKNFL-------NLPNVKVPLILGIW--GGKGQGKSFQCELVFAKMGI---- 185
MD V+ + N + + +PL GI G G GK+ + A+MG+
Sbjct: 150 MDDVIDQLADNLIMPFKYHNDYRESDLPLPKGIMLHGPPGCGKTMLVRAMAAEMGVPFVE 209
Query: 186 -------NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238
+G +GE K IR+R+ EA KK C +FI+++DA A + ++Q + +
Sbjct: 210 ILGPAIVSGMSGESEKGIRERFEEA----KKNAPCLIFIDEIDAIAPKR-ESSQSQMEKR 264
Query: 239 MVNATLMNIADNPTNVQLP 257
+V L+++ + + + P
Sbjct: 265 IVAQLLVSMDELQRDTEKP 283
>gi|389852490|ref|YP_006354724.1| cell division control protein 48, aaa family [Pyrococcus sp. ST04]
gi|388249796|gb|AFK22649.1| putative cell division control protein 48, aaa family [Pyrococcus
sp. ST04]
Length = 837
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 27/150 (18%)
Query: 164 IWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + + + + I G GE K IR+ +R+A ++
Sbjct: 584 LYGPPGTGKTLLAKAIATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 639
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+FI+++DA A G T V ++++N L M +EN V +I
Sbjct: 640 SIIFIDEIDAIAPARGTTEGERVTDRLINQLLTE------------MDGIQENSGVVVIA 687
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 302
N L L+R GR ++ P +++
Sbjct: 688 ATNRPDILDPALLRPGRFDRLILVPAPDEK 717
>gi|256016691|emb|CAR63641.1| putative 26S proteasome regulatory chain 4 [Angiostrongylus
cantonensis]
Length = 435
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 21/130 (16%)
Query: 185 INGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNAT 243
+ N+G+ AKL+R+ ++ A K+ C +F++++DA G R +++ Q V T
Sbjct: 251 VQKNSGDGAKLVRELFKMA----KESAPCIVFLDEIDAVGTKRFDTSSR---GEQEVQRT 303
Query: 244 LMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----T 298
L+ + + QL G E V +I+ N +L + L+R GR+++ P T
Sbjct: 304 LLELLN-----QLDGF---ESRGDVKVILATNRIDSLDSALLRPGRIDRKIELPKPDEKT 355
Query: 299 REDRIGVCSG 308
R+ G+ +
Sbjct: 356 RQKIFGIHTA 365
>gi|260799531|ref|XP_002594749.1| hypothetical protein BRAFLDRAFT_81216 [Branchiostoma floridae]
gi|229279985|gb|EEN50760.1| hypothetical protein BRAFLDRAFT_81216 [Branchiostoma floridae]
Length = 467
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 402 LADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCN 461
L +L A + DA ++ G ++ P GCT PAAAN+D A DDGSC
Sbjct: 384 LQGAFLEGARVADAIATCVRGGP-----CEKEYQPPRRGCTCPAAANFDIQATVDDGSCL 438
Query: 462 Y 462
Y
Sbjct: 439 Y 439
>gi|119467978|ref|XP_001257795.1| proteasome regulatory particle subunit Rpt4, putative [Neosartorya
fischeri NRRL 181]
gi|119405947|gb|EAW15898.1| proteasome regulatory particle subunit Rpt4, putative [Neosartorya
fischeri NRRL 181]
Length = 393
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + M N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIP 306
>gi|258564698|ref|XP_002583094.1| hypothetical protein UREG_07867 [Uncinocarpus reesii 1704]
gi|237908601|gb|EEP83002.1| hypothetical protein UREG_07867 [Uncinocarpus reesii 1704]
Length = 393
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVC----SGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSGVAIEGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 334 TVVKMSDGLNGADL 347
>gi|393221790|gb|EJD07274.1| ATPase [Fomitiporia mediterranea MF3/22]
Length = 400
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V A + ++ GE A+++R+ + A ++ +
Sbjct: 183 LYGPPGTGKTLLARAVAATLDTKFLKVVSSAIVDKYIGESARVVREMFGYA----RENEP 238
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + G + +I+
Sbjct: 239 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------KTKLIM 288
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P R + + + +G + + ++ E IVKL D
Sbjct: 289 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAGPVNKGKDIDYEAIVKLSDG 348
Query: 327 FPGQSI 332
F G +
Sbjct: 349 FNGADL 354
>gi|376316133|emb|CCF99533.1| peptidase, M75 family, imelysin-like [uncultured Flavobacteriia
bacterium]
Length = 396
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 439 EGCTDPAAANYDPTARSDDGSCNYQ 463
+GCTDP A NYDP A+ ++ SC Y+
Sbjct: 30 KGCTDPLALNYDPNAKKENQSCEYE 54
>gi|340502234|gb|EGR28943.1| vesicular transport protein cdc48, putative [Ichthyophthirius
multifiliis]
Length = 670
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 185 INGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATL 244
+N GE K +RQ + A K C +F +++DA + G + V ++VN+ L
Sbjct: 470 LNKYVGESEKSVRQVFSRA----KTSAPCIIFFDEIDALVPKRGSDSTNQVTERVVNSLL 525
Query: 245 MNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 302
+L G E +V +I N + L+R GR++K + P E++
Sbjct: 526 ---------AELDGF---EGRKQVFVIAATNRPDIIDPALLRGGRLDKLLYVPLPANEEK 573
Query: 303 IGVCSGIFR 311
I + + +
Sbjct: 574 ILILEALLK 582
>gi|303313818|ref|XP_003066918.1| 26S proteasome regulatory ATPase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240106585|gb|EER24773.1| 26S proteasome regulatory ATPase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320032629|gb|EFW14581.1| 26S protease regulatory subunit S10B [Coccidioides posadasii str.
Silveira]
Length = 393
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVC----SGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSGVAIEGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 334 TVVKMSDGLNGADL 347
>gi|357491403|ref|XP_003615989.1| Cell division protease ftsH-like protein [Medicago truncatula]
gi|355517324|gb|AES98947.1| Cell division protease ftsH-like protein [Medicago truncatula]
Length = 960
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 183 MGINGNAGEPA--KLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+G+NG E A + QR R+ KK C +FI+++DA G+ N QM
Sbjct: 598 LGVNGREFEEAIVGVGAQRVRDLFAAAKKRAHCIIFIDEIDAIGGKPNP------NYQMY 651
Query: 241 NA-TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 299
+ TL + V+L G+ E+N + +I N ++ L+R GR ++ P
Sbjct: 652 SKLTLYQML-----VELDGL---EQNEGIIVIGATNSHESIDEALLRHGRFDRRVDVPI- 702
Query: 300 EDRIGVC-------SGIFRTDNVPKEDIVKLVDTFPGQSIDFF---GALRARVY 343
DR G S + DNV I + F G + F ALRA Y
Sbjct: 703 PDRKGWLEIFEYHMSKVLTKDNVDLMTIARFTPGFSGADLANFYNIAALRATKY 756
>gi|125586968|gb|EAZ27632.1| hypothetical protein OsJ_11576 [Oryza sativa Japonica Group]
Length = 271
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 368 EGPPT--FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDAN--DDAIKNG 423
+GP T F PK L+K L + + ++ N R D+ A D N + + G
Sbjct: 173 DGPYTLKFRVPKPWLNKPLSFFNEGLADELN--REGACDR----AIFPDENVVITSCEMG 226
Query: 424 SFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSC 460
S+Y + + K+ + GC DP + +DP A DDGSC
Sbjct: 227 SYYEEGGDRCKLDIVSGCMDPNSHMFDPLATVDDGSC 263
>gi|448609636|ref|ZP_21660667.1| ATPase AAA [Haloferax mucosum ATCC BAA-1512]
gi|445746653|gb|ELZ98114.1| ATPase AAA [Haloferax mucosum ATCC BAA-1512]
Length = 587
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----INGN------AGEPAKLIRQRYREAA 204
+ +P +L ++G G GKS+ E + ++G ++G AK ++Q + EA
Sbjct: 374 IPIPSLL-LYGPPGTGKSYLAEAIAGEIGYPYAILSGGDILSQWINASAKQVKQLFSEAK 432
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 247
I + +F++++D+ + GG Q+ + ++VN L ++
Sbjct: 433 AIADQTGGVVVFVDEIDSVLSKRGGANQHAEDQKVVNEFLTHL 475
>gi|94734052|emb|CAK10965.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
Length = 269
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 25/140 (17%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 142 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 197
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 198 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 247
Query: 273 TGNDFSTLYAPLIRDGRMEK 292
N TL L+R GR+++
Sbjct: 248 ATNRPDTLDPALLRPGRLDR 267
>gi|115453937|ref|NP_001050569.1| Os03g0586500 [Oryza sativa Japonica Group]
gi|50399944|gb|AAT76332.1| expressed protein [Oryza sativa Japonica Group]
gi|108709556|gb|ABF97351.1| expressed protein [Oryza sativa Japonica Group]
gi|113549040|dbj|BAF12483.1| Os03g0586500 [Oryza sativa Japonica Group]
gi|215695566|dbj|BAG90757.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765505|dbj|BAG87202.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 271
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 368 EGPPT--FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDAN--DDAIKNG 423
+GP T F PK L+K L + + ++ N R D+ A D N + + G
Sbjct: 173 DGPYTLKFRVPKPWLNKPLSFFNEGLADELN--REGACDR----AIFPDENVVITSCEMG 226
Query: 424 SFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSC 460
S+Y + + K+ + GC DP + +DP A DDGSC
Sbjct: 227 SYYEEGGDRCKLDIVSGCMDPNSHMFDPLATVDDGSC 263
>gi|227826620|ref|YP_002828399.1| microtubule-severing ATPase [Sulfolobus islandicus M.14.25]
gi|229583784|ref|YP_002842285.1| Microtubule-severing ATPase [Sulfolobus islandicus M.16.27]
gi|238618707|ref|YP_002913532.1| Microtubule-severing ATPase [Sulfolobus islandicus M.16.4]
gi|227458415|gb|ACP37101.1| Microtubule-severing ATPase [Sulfolobus islandicus M.14.25]
gi|228018833|gb|ACP54240.1| Microtubule-severing ATPase [Sulfolobus islandicus M.16.27]
gi|238379776|gb|ACR40864.1| Microtubule-severing ATPase [Sulfolobus islandicus M.16.4]
Length = 606
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 24/190 (12%)
Query: 153 LPNVKVPLILGI--WGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYREAADIIKK- 209
L +KVP I GI +G G GK+ + + + + A A+++ + Y A IK+
Sbjct: 370 LEQLKVPPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKGYEGAIAAIKEV 429
Query: 210 ------GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K + +++LDA A + + YT ++++VN L ++ G+ + +
Sbjct: 430 FNRARENKPAIVLLDELDAIASKRNYKS-YTDSSKIVNQLL---------TEMDGIRSLK 479
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIV 321
E V +I T N + L+R GR +K P RE+R+ + + K D
Sbjct: 480 E---VVVIGTTNRLKAIDPALLRPGRFDKIIHMPLPNREERLDILMKYIGKEECEKVDCG 536
Query: 322 KLVDTFPGQS 331
L + G S
Sbjct: 537 ILAEQTEGYS 546
>gi|110669061|ref|YP_658872.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
walsbyi DSM 16790]
gi|385804649|ref|YP_005841049.1| AAA ATPase [Haloquadratum walsbyi C23]
gi|109626808|emb|CAJ53276.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi DSM 16790]
gi|339730141|emb|CCC41459.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi C23]
Length = 742
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GE K IRQ +R+A + +F ++LD+ A GG T V+ ++VN L
Sbjct: 538 GESEKAIRQTFRKARQV----SPTVIFFDELDSLAPSRGGGTGNNVSERVVNQLL----- 588
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 293
+L G+ EEN V ++ N + LIR GR ++
Sbjct: 589 ----TELDGL---EENGNVMVVAATNRPDMIDPALIRSGRFDRL 625
>gi|254412421|ref|ZP_05026195.1| ATPase, AAA family protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196180731|gb|EDX75721.1| ATPase, AAA family protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 532
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 34/164 (20%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYR 201
+PN K L++GI +G GKS + + + + G GE +RQ +
Sbjct: 267 IPNPKGILLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGESESRVRQMIQ 323
Query: 202 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260
+ I C L+I+++D G +G G + ++ V TL+ +
Sbjct: 324 ISEAIAP----CVLWIDEIDKAFGNIGAGVDGDSGTSRRVFGTLIT-------------W 366
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 302
QE+ V I+ T N+ L A L+R GR ++ ++ PT +R
Sbjct: 367 MQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTEAER 410
>gi|148508161|gb|ABQ75952.1| AAA-type ATPase [uncultured haloarchaeon]
Length = 752
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GE K IRQ +R+A + +F ++LD+ A GG T V+ ++VN L
Sbjct: 548 GESEKAIRQTFRKARQV----SPTVIFFDELDSLAPSRGGGTGNNVSERVVNQLL----- 598
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 293
+L G+ EEN V ++ N + LIR GR ++
Sbjct: 599 ----TELDGL---EENGNVMVVAATNRPDMIDPALIRSGRFDRL 635
>gi|119185236|ref|XP_001243428.1| hypothetical protein CIMG_07324 [Coccidioides immitis RS]
gi|392866301|gb|EAS28928.2| 26S protease regulatory subunit 10B [Coccidioides immitis RS]
Length = 393
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVC----SGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSGVAIEGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 334 TVVKMSDGLNGADL 347
>gi|423402042|ref|ZP_17379215.1| hypothetical protein ICW_02440 [Bacillus cereus BAG2X1-2]
gi|423477266|ref|ZP_17453981.1| hypothetical protein IEO_02724 [Bacillus cereus BAG6X1-1]
gi|401651941|gb|EJS69501.1| hypothetical protein ICW_02440 [Bacillus cereus BAG2X1-2]
gi|402430893|gb|EJV62966.1| hypothetical protein IEO_02724 [Bacillus cereus BAG6X1-1]
Length = 314
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 46/197 (23%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINGN-------------AGEPAKLIRQRYREAADIIK 208
L +G G GK+F V + IN N +GE K + + + EA +
Sbjct: 71 LLFYGPPGCGKTFLARAVAGE--INANFIHLELQAILSMWSGEAEKNLHEVFEEA----R 124
Query: 209 KGKMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265
K K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 125 KTKPCILFIDELDAYGGNRQKMGAHHQRTLVNQLL-------------VEMDG--SNSFN 169
Query: 266 PRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED---- 319
V II N + L R GR F P E+R+ + +T + P+ +
Sbjct: 170 EGVYIIGATNTPWYIDPALRRPGRFNSLVFVAPPNNEERLTILE--LKTKDKPRMELQLD 227
Query: 320 -IVKLVDTFPGQSIDFF 335
+ K + F G + +
Sbjct: 228 FVSKYAEHFSGADLTYL 244
>gi|449295356|gb|EMC91378.1| hypothetical protein BAUCODRAFT_39547 [Baudoinia compniacensis UAMH
10762]
Length = 392
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCS----GIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ V G+ + + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEAGRLEVLKIHAMGVQKEGEIDFE 332
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 333 SVVKMSDGLNGADL 346
>gi|119773293|ref|YP_926033.1| serine protease [Shewanella amazonensis SB2B]
gi|119765793|gb|ABL98363.1| serine protease, subtilase family [Shewanella amazonensis SB2B]
Length = 1638
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 437 VPEGCTDPAAANYDPTARSDDGSCNY 462
V +GCTD A N+DP A DDGSC +
Sbjct: 1573 VEKGCTDSGATNFDPNANQDDGSCKF 1598
>gi|308161269|gb|EFO63723.1| 26S protease regulatory subunit 7 [Giardia lamblia P15]
Length = 401
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 22/190 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYREAADIIKK------ 209
+K P + ++G G GKS C+ + +GI+ ++LIR+ E+A +++
Sbjct: 169 IKPPKSILLYGAPGTGKSLICKCLANSLGISYIKCVGSQLIRKYIGESARLVRDLFAYAR 228
Query: 210 -GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268
K C L I+++DA A + + T N++ V+ L+ + ++ G +E+ +
Sbjct: 229 LKKPCLLMIDEVDAIATKR--SDDGTHNDREVDRALLQLL-----TEIDGFTGLDES--I 279
Query: 269 PIIVTGNDFSTLYAPLIRDGR----MEKFYWAPT-REDRIGVCS-GIFRTDNVPKEDIVK 322
I+ N L L+R GR +E PT R + + + S G+ ++V IVK
Sbjct: 280 KIVFCTNRPEALDPALMRPGRCDVKIEIKLPDPTGRYEILKIHSKGLSLGEDVDFAGIVK 339
Query: 323 LVDTFPGQSI 332
D F G +
Sbjct: 340 STDGFNGADL 349
>gi|395226752|ref|ZP_10405194.1| AAA+ family ATPase [Thiovulum sp. ES]
gi|394444986|gb|EJF05994.1| AAA+ family ATPase [Thiovulum sp. ES]
Length = 516
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 40/193 (20%)
Query: 160 LILGIWGGKGQGKSFQCELV------------FAKMGINGNAGEPAKLIRQRYREAADII 207
L+LGI G GKS + V F K+ G GE IRQ + A +
Sbjct: 258 LLLGI---PGTGKSLSAKAVSNSWKFPLLRLDFGKI-FGGLVGESESNIRQTIKIAESL- 312
Query: 208 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267
L+I++++ G G G + V T + + QE+
Sbjct: 313 ---SPSILWIDEIEKGLGASSGGVNDGGTSTRVFGTFLT-------------WLQEKESE 356
Query: 268 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS-GIFRTDNVPK----EDI 320
V ++ T ND S+L L+R GR ++ ++ PT E+R + I R PK +++
Sbjct: 357 VFVLATANDISSLPPELLRKGRFDEIFFVDLPTFEERKQILEIHIKRRKQNPKLIDVDEV 416
Query: 321 VKLVDTFPGQSID 333
F G +D
Sbjct: 417 ANFTKGFSGAELD 429
>gi|229583244|ref|YP_002841643.1| Microtubule-severing ATPase [Sulfolobus islandicus Y.N.15.51]
gi|228013960|gb|ACP49721.1| Microtubule-severing ATPase [Sulfolobus islandicus Y.N.15.51]
Length = 606
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 24/190 (12%)
Query: 153 LPNVKVPLILGI--WGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYREAADIIKK- 209
L +KVP I GI +G G GK+ + + + + A A+++ + Y A IK+
Sbjct: 370 LEQLKVPPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKGYEGAIAAIKEV 429
Query: 210 ------GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K + +++LDA A + + YT ++++VN L ++ G+ + +
Sbjct: 430 FNRARENKPAIVLLDELDAIASKRNYKS-YTDSSRIVNQLL---------TEMDGIRSLK 479
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIV 321
E V +I T N + L+R GR +K P RE+R+ + + K D
Sbjct: 480 E---VVVIGTTNRLKAIDPALLRPGRFDKIIHMPLPNREERLDILMKYIGKEECEKVDCG 536
Query: 322 KLVDTFPGQS 331
L + G S
Sbjct: 537 ILAEQTEGYS 546
>gi|227829261|ref|YP_002831040.1| Microtubule-severing ATPase [Sulfolobus islandicus L.S.2.15]
gi|229578032|ref|YP_002836430.1| Microtubule-severing ATPase [Sulfolobus islandicus Y.G.57.14]
gi|284996617|ref|YP_003418384.1| Vesicle-fusing ATPase [Sulfolobus islandicus L.D.8.5]
gi|227455708|gb|ACP34395.1| Microtubule-severing ATPase [Sulfolobus islandicus L.S.2.15]
gi|228008746|gb|ACP44508.1| Microtubule-severing ATPase [Sulfolobus islandicus Y.G.57.14]
gi|284444512|gb|ADB86014.1| Vesicle-fusing ATPase [Sulfolobus islandicus L.D.8.5]
Length = 606
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 24/190 (12%)
Query: 153 LPNVKVPLILGI--WGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYREAADIIKK- 209
L +KVP I GI +G G GK+ + + + + A A+++ + Y A IK+
Sbjct: 370 LEQLKVPPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKGYEGAIAAIKEV 429
Query: 210 ------GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K + +++LDA A + + YT ++++VN L ++ G+ + +
Sbjct: 430 FNRARENKPAIVLLDELDAIASKRNYKS-YTDSSRIVNQLL---------TEMDGIRSLK 479
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIV 321
E V +I T N + L+R GR +K P RE+R+ + + K D
Sbjct: 480 E---VVVIGTTNRLKAIDPALLRPGRFDKIIHMPLPNREERLDILMKYIGKEECEKVDCG 536
Query: 322 KLVDTFPGQS 331
L + G S
Sbjct: 537 ILAEQTEGYS 546
>gi|428171366|gb|EKX40284.1| 26S proteasome regulatory complex, ATPase RPT4 [Guillardia theta
CCMP2712]
Length = 402
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 31/189 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-----QCEL------VFAKMGINGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ C + V + ++ GE A+LIR+ + A
Sbjct: 177 IKPPKGVLLYGPPGTGKTLLARAIACNIEASFLKVVSSAIVDKYIGESARLIREMFGYA- 235
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + QL G +
Sbjct: 236 ---KERQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DV 282
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V II+ N L L+R GR+++ P + R+ V + I + ++ E
Sbjct: 283 LNKVKIIMATNRPDVLDPALLRPGRLDRKVEISLPNEQGRLEVLKIHAAPITKHGDIDYE 342
Query: 319 DIVKLVDTF 327
+ KL D F
Sbjct: 343 AVCKLADGF 351
>gi|45184711|ref|NP_982429.1| AAL113Wp [Ashbya gossypii ATCC 10895]
gi|44980057|gb|AAS50253.1| AAL113Wp [Ashbya gossypii ATCC 10895]
gi|374105627|gb|AEY94538.1| FAAL113Wp [Ashbya gossypii FDAG1]
Length = 432
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 25/148 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
++ P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 207 IQSPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 265
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N
Sbjct: 266 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNL-- 313
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
+ +I+ N TL L+R GR+++
Sbjct: 314 -GQTKVIMATNRPDTLDPALLRPGRLDR 340
>gi|412986591|emb|CCO15017.1| unnamed protein product [Bathycoccus prasinos]
Length = 1277
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 30/155 (19%)
Query: 164 IWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+F + G+ + GE K IR+ ++ A +
Sbjct: 1011 LYGPPGVGKTFVAHAAITESGMRCIKVRGPEIMSKFIGESEKAIREVFKRA----RAAAP 1066
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
CCLF ++ D+ R G + V +++VN L I +L G+Y +I
Sbjct: 1067 CCLFFDEFDSICPRRG-SDNAGVMDRLVNQLLTEIDGFE---ELRGVY---------VIA 1113
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV 305
T + T+ L+R GR++ + PT ++R +
Sbjct: 1114 TSSRPDTMDPALLRPGRLDNLLFLDWPTEKERYDI 1148
>gi|281204612|gb|EFA78807.1| 26S protease regulatory subunit S10B [Polysphondylium pallidum
PN500]
Length = 493
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 31/189 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A++IR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAIASNLDANFLKVVSSAIVDKYIGESARVIREMFGYAR 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 227 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLQ- 274
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGV-CSGIFRTDNVPKE 318
+V II+ N L L+R GR+++ P R D + + S I + ++ E
Sbjct: 275 --KVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHASSITKHGDIDFE 332
Query: 319 DIVKLVDTF 327
I KL D F
Sbjct: 333 AISKLADGF 341
>gi|426353196|ref|XP_004044083.1| PREDICTED: peroxisome assembly factor 2 [Gorilla gorilla gorilla]
Length = 741
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 46/209 (22%)
Query: 166 GGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAADIIKKGKMCC 214
G G GK+ +C L F + IN G+ + +R+ + A + C
Sbjct: 505 GPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARA----RAAAPCI 560
Query: 215 LFINDLDAGA---GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
+F ++LD+ A GR G + V +++V+ L +L G+++ ++ V +I
Sbjct: 561 IFFDELDSLAPSRGRSGDSG--GVMDRVVSQLL---------AELDGLHSTQD---VFVI 606
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDR---IGVCSGIFRTDNV-PKEDIVKLVDTF 327
N L L+R GR +K + T EDR + V S I R + P +V ++D
Sbjct: 607 GATNRPDLLDPALLRPGRFDKLVFVGTNEDRASQLRVLSAITRKFKLEPSVSLVNVLDCC 666
Query: 328 PGQ--SIDFF--------GALRARVYDDE 346
P Q D + AL+ RV+D E
Sbjct: 667 PPQLTGADLYSLCSDAMTAALKRRVHDLE 695
>gi|212224263|ref|YP_002307499.1| CDC48/VCP [Thermococcus onnurineus NA1]
gi|212009220|gb|ACJ16602.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
Length = 797
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 30/183 (16%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQ 198
FL L + P + ++G G GK+ + V + + I G GE K IR+
Sbjct: 543 FLGL-GITPPKGILLYGPPGTGKTLLAKAVATESEANFIAIRGPEVLSKWVGESEKNIRE 601
Query: 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
+R+A ++ +FI+++DA A R G T V ++++N L
Sbjct: 602 IFRKA----RQAAPTVIFIDEIDAIAPRRG-TDVNRVTDRLINQLLTE------------ 644
Query: 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP-K 317
M EN V +I N + L+R GR ++ P +++ + T NVP
Sbjct: 645 MDGIAENSGVVVIAATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLA 704
Query: 318 EDI 320
EDI
Sbjct: 705 EDI 707
>gi|328852872|gb|EGG02015.1| ATP-dependent 26S proteasome regulatory subunit [Melampsora
larici-populina 98AG31]
Length = 393
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLAKAVANTLSTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCS-GIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P R + + + + I + + E
Sbjct: 276 --KTKIIMATNRPDTLDPALMRPGRLDRKIEIPLPNEVARMEILKIHALPIQKHGEIDYE 333
Query: 319 DIVKLVDTFPGQSI 332
IVKL + F G +
Sbjct: 334 AIVKLAEGFNGADL 347
>gi|242808792|ref|XP_002485237.1| proteasome regulatory particle subunit Rpt4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218715862|gb|EED15284.1| proteasome regulatory particle subunit Rpt4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 410
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + S + + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASTVVTEGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 334 SIVKMSDGLNGADL 347
>gi|328869555|gb|EGG17933.1| 26S protease regulatory subunit S10B [Dictyostelium fasciculatum]
Length = 393
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 31/189 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A++IR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLQ- 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGV-CSGIFRTDNVPKE 318
+V II+ N L L+R GR+++ P R D + + S I + +V +
Sbjct: 276 --KVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHASSITKHGDVDYD 333
Query: 319 DIVKLVDTF 327
+ KL D F
Sbjct: 334 AVAKLADGF 342
>gi|358395878|gb|EHK45265.1| ATPase Rpt4 of the 19S regulatory particle of the 26S proteasome
[Trichoderma atroviride IMI 206040]
Length = 391
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + S + ++ E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASSVVIDGDIDYE 331
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|301756719|ref|XP_002914210.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda
melanoleuca]
gi|281347245|gb|EFB22829.1| hypothetical protein PANDA_002073 [Ailuropoda melanoleuca]
Length = 389
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNLLKVVSSSIVDKYIGESACLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F+++++A GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEINAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPTTKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>gi|242808787|ref|XP_002485236.1| proteasome regulatory particle subunit Rpt4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218715861|gb|EED15283.1| proteasome regulatory particle subunit Rpt4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 393
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + S + + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASTVVTEGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 334 SIVKMSDGLNGADL 347
>gi|71661257|ref|XP_817652.1| 26S protease regulatory subunit [Trypanosoma cruzi strain CL
Brener]
gi|70882857|gb|EAN95801.1| 26S protease regulatory subunit, putative [Trypanosoma cruzi]
Length = 398
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 34/184 (18%)
Query: 164 IWGGKGQGKSFQCEL-----------VFAKMGINGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V A ++ GE A+++R+ + A ++ +
Sbjct: 181 LYGPPGTGKTLLAKAIASNVDAAFLKVVASSIVDKYIGESARVVREMFAYA----REHEP 236
Query: 213 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
C +FI+++DA G R+ GT+ +++ + TLM + QL G ++ +V +I
Sbjct: 237 CIIFIDEVDAIGGKRIDGTS----SDREIQRTLMELL-----YQLDGF---DKLGKVKVI 284
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVD 325
+ N TL L+R GR+++ P R+ V S + + ++ + +VKL +
Sbjct: 285 MATNRPDTLDLALMRPGRLDRKIEIGLPNEAGRLDVLKIHASKLTKQGDIDYDSLVKLSE 344
Query: 326 TFPG 329
F G
Sbjct: 345 GFNG 348
>gi|330795954|ref|XP_003286035.1| 26S protease regulatory subunit S10B [Dictyostelium purpureum]
gi|325084033|gb|EGC37471.1| 26S protease regulatory subunit S10B [Dictyostelium purpureum]
Length = 393
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 31/189 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A++IR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLQ- 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGV-CSGIFRTDNVPKE 318
+V II+ N L L+R GR+++ P R D + + S I + ++ +
Sbjct: 276 --KVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHASSITKHGDIDYD 333
Query: 319 DIVKLVDTF 327
+ KL D+F
Sbjct: 334 ALSKLCDSF 342
>gi|399217513|emb|CCF74400.1| unnamed protein product [Babesia microti strain RI]
Length = 419
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 36/188 (19%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GE A+++R+ ++ A + K C LFI+++DA G G + + + V T++ I +
Sbjct: 237 GEGARMVRELFQMA----RSKKACILFIDEVDAIGGSRGSESAH--GDHEVQRTMLEIVN 290
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCS 307
QL G ++ N + +++ N TL L+R GR+++ + P E RI +
Sbjct: 291 -----QLDG-FDARGN--IKVLMATNRPDTLDPALLRPGRIDRKVEFGLPDLEGRIHIFK 342
Query: 308 GIFRT----DNVPKEDIVKLVDTFPGQSIDFFG------ALRARVYDDEVRKWISE---- 353
RT N+ E + +L G + A+RAR RK ISE
Sbjct: 343 IHARTMSMDKNIRYEMLARLCPNSTGADLRSVCTEAGMFAIRAR------RKSISERDLI 396
Query: 354 VGIERIGK 361
IER+ K
Sbjct: 397 EAIERVIK 404
>gi|386001603|ref|YP_005919902.1| AAA ATPase [Methanosaeta harundinacea 6Ac]
gi|357209659|gb|AET64279.1| AAA family ATPase, CDC48 subfamily [Methanosaeta harundinacea 6Ac]
Length = 760
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 33/233 (14%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRY----REA 203
+NF L ++ P + ++G G GK+ + V + N + ++++ + Y R
Sbjct: 505 ENFRRL-GIEAPKGVLLYGPPGTGKTLLAKAVANESNANFLTTKGSEILSKWYGESERHI 563
Query: 204 ADIIKKGKMCC---LFINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 259
A+I +K + +F+++LD+ A R GGT + V ++VN L I GM
Sbjct: 564 AEIFRKARQVAPAIVFLDELDSLAPVRGGGTGEPHVTERIVNQLLSEID---------GM 614
Query: 260 YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTD 313
EE V +I N + LIR GR ++ P +R V +G + +
Sbjct: 615 ---EELRGVVVIAATNRPDIIDPALIRPGRFDELIMVPVPDAASRRKIFAVHTGKMPLAE 671
Query: 314 NVPKEDIVKLVDTFPGQSIDFFG------ALRARVYDDEVRKWISEVGIERIG 360
+V + +V+ D + G I ALR + EVRK +E +G
Sbjct: 672 DVDLDRLVERTDQYTGADIASICRKAGRLALREDMNAVEVRKSHFLAALEEVG 724
>gi|212537565|ref|XP_002148938.1| proteasome regulatory particle subunit Rpt4, putative [Talaromyces
marneffei ATCC 18224]
gi|210068680|gb|EEA22771.1| proteasome regulatory particle subunit Rpt4, putative [Talaromyces
marneffei ATCC 18224]
Length = 393
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + S + + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASTVVTEGEIDFE 333
Query: 319 DIVKLVDTFPGQSI 332
IVK+ D G +
Sbjct: 334 SIVKMSDGLNGADL 347
>gi|308509962|ref|XP_003117164.1| hypothetical protein CRE_02019 [Caenorhabditis remanei]
gi|308242078|gb|EFO86030.1| hypothetical protein CRE_02019 [Caenorhabditis remanei]
Length = 438
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 23/195 (11%)
Query: 185 INGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNAT 243
+ N+GE A+L+RQ ++ A D +FI+++DA G R +++ Q V T
Sbjct: 254 VQKNSGEGARLVRQIFQMAKDQAP----SIVFIDEIDAVGTKRFDTSSR---GEQEVQRT 306
Query: 244 LMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----T 298
L+ + + QL G E V +I+ N +L LIR GR+++ P T
Sbjct: 307 LLELLN-----QLDGF---ESRGDVKVIMATNRIDSLDPALIRPGRIDRKIELPRPDEKT 358
Query: 299 REDRIGV-CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE 357
R+ G+ SG+ V + ++ + G I + RK +S E
Sbjct: 359 RQKIFGIHTSGMTLQKAVTYDSVLGKEKSISGAEIKAVCTEAGMMALRSQRKCVSTDDFE 418
Query: 358 RIGKR-LVNSKEGPP 371
+ K ++N K G P
Sbjct: 419 KALKSVMLNKKAGAP 433
>gi|162312486|ref|XP_001713083.1| 19S proteasome regulatory subunit Rpt5 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|3024433|sp|O14126.1|PRS6A_SCHPO RecName: Full=26S protease regulatory subunit 6A
gi|6681372|dbj|BAA88693.1| regulatory subunit of 26S proteasome [Schizosaccharomyces pombe]
gi|159883985|emb|CAB16588.2| 19S proteasome regulatory subunit Rpt5 (predicted)
[Schizosaccharomyces pombe]
Length = 438
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 33/192 (17%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
VK P ++G G GK+ Q F K+ + G+ AKL+R +A
Sbjct: 216 VKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVR----DAF 271
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
+ K+ +FI++LDA G R ++ V T++ + + QL G + +
Sbjct: 272 ALAKEKSPAIIFIDELDAIGTKRFDSEK---AGDREVQRTMLELLN-----QLDGFSSDD 323
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRT----DNVPK 317
RV +I N TL L+R GR+++ + P E R+G+ R D++
Sbjct: 324 ---RVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINW 380
Query: 318 EDIVKLVDTFPG 329
E++ + D + G
Sbjct: 381 EELARSTDEYNG 392
>gi|392423530|ref|YP_006464524.1| membrane protease FtsH catalytic subunit [Desulfosporosinus
acidiphilus SJ4]
gi|391353493|gb|AFM39192.1| membrane protease FtsH catalytic subunit [Desulfosporosinus
acidiphilus SJ4]
Length = 634
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 96/242 (39%), Gaps = 51/242 (21%)
Query: 150 FLNLPN------VKVPLILGIWGGKGQGKSFQCELVFAKMG-----INGN------AGEP 192
FL P K+P + ++G G GK+ V + G I+G+ G
Sbjct: 175 FLKFPKKFNELGAKIPTGVLLFGPPGTGKTLLARAVSGEAGVPFFSISGSDFVEMFVGVG 234
Query: 193 AKLIRQRYREAADIIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNI 247
A +R + +A KK C +FI+++DA GAG GG + Q +N L
Sbjct: 235 ASRVRDLFEQA----KKSAPCIVFIDEIDAVGRQRGAGLGGGHDE---REQTLNQLL--- 284
Query: 248 ADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPT---REDR 302
V++ G N V II N L L+R GR ++ AP RE+
Sbjct: 285 ------VEMDGFNG---NDGVIIIAATNRADVLDPALLRPGRFDRQIVVDAPDVKGREEI 335
Query: 303 IGV-CSGIFRTDNVPKEDIVKLVDTFPGQSIDFF----GALRARVYDDEVRKWISEVGIE 357
+ V G T V E I + F G I L AR ++++R+ E IE
Sbjct: 336 LKVHAKGKPITKEVDLEVIARRTAGFTGADISNLLNEAALLSARRGENQIRQQTIEESIE 395
Query: 358 RI 359
R+
Sbjct: 396 RV 397
>gi|452837689|gb|EME39631.1| hypothetical protein DOTSEDRAFT_75321 [Dothistroma septosporum
NZE10]
Length = 390
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIP 303
>gi|421529085|ref|ZP_15975634.1| ATPase [Pseudomonas putida S11]
gi|402213474|gb|EJT84822.1| ATPase [Pseudomonas putida S11]
Length = 402
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 28/192 (14%)
Query: 156 VKVPLILGIWGGKGQGKSFQC-------ELVFAKMGINGNAGEPAKLIRQRYREAADIIK 208
VK P + I G G GKS +L ++ I G+ R A + +
Sbjct: 188 VKTPKGVLIAGMPGCGKSLTAKVAAGLFQLPLLRLDIGSLLGKYVGESEHNMRRALSMAE 247
Query: 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268
C L++++L+ MGG V +++ L + QE+ V
Sbjct: 248 TVSPCILWVDELEKAFVGMGGGNASEVTARLLGYFLT--------------WMQEKTGAV 293
Query: 269 PIIVTGNDFSTLYAPLIRDGRMEKFYWA----PT-REDRIGVCSGIF--RTDNVPKEDIV 321
+I T ND + L L+R GR ++ ++ P RE +G+ G R ++ +++V
Sbjct: 294 FVIATANDITALPPELLRKGRFDEIFYVGFPNPVEREKILGIHLGKSGQRVADLRMDELV 353
Query: 322 KLVDTFPGQSID 333
L + G I+
Sbjct: 354 NLCRDYCGADIE 365
>gi|340517376|gb|EGR47620.1| predicted protein [Trichoderma reesei QM6a]
Length = 391
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + S + ++ E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASSVVIDGDIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|336252474|ref|YP_004595581.1| AAA family ATPase [Halopiger xanaduensis SH-6]
gi|335336463|gb|AEH35702.1| AAA family ATPase, CDC48 subfamily [Halopiger xanaduensis SH-6]
Length = 743
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 28/142 (19%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + N + GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 213 CCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
+F ++LDA A GR GG T V+ ++VN L +L G+ + E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEDMED---VMVI 604
Query: 272 VTGNDFSTLYAPLIRDGRMEKF 293
N + L+R GR ++
Sbjct: 605 GATNRPDMIDPALLRSGRFDRL 626
>gi|372209749|ref|ZP_09497551.1| hypothetical protein FbacS_06521 [Flavobacteriaceae bacterium S85]
Length = 1348
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 439 EGCTDPAAANYDPTARSDDGSCNY 462
+GCTDP + Y+P A DDGSC Y
Sbjct: 533 KGCTDPNSCTYNPLATDDDGSCTY 556
>gi|322708524|gb|EFZ00101.1| proteasome regulatory particle subunit Rpt4 [Metarhizium anisopliae
ARSEF 23]
Length = 399
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIP 304
>gi|284161924|ref|YP_003400547.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
gi|284011921|gb|ADB57874.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus profundus DSM 5631]
Length = 1217
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 107/257 (41%), Gaps = 35/257 (13%)
Query: 173 SFQCELVFAKMGINGNAGEPAKLIRQRYREAADIIKKGKM---CCLFINDLDAGAGRMGG 229
F +LV G N AG ++ R ++ +K K C LF +++DA A R G
Sbjct: 949 KFVYDLVEVVEGSNFIAG--GIVVHNSERHVREMFRKAKQVAPCILFFDEIDALAPRRGL 1006
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
V ++V+ L +L G+ EE V +I N + L+R GR
Sbjct: 1007 GADTNVTERVVSQLL---------TELDGI---EELKDVFVIAATNRPDMIDPALLRPGR 1054
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPK------EDIVKLVDTFPGQSIDFFGALRARVY 343
+E+ + P D+ G IF+ K ED+ K V+ ++ +F A+
Sbjct: 1055 IERHIYIPP-PDKAG-RKEIFKIHLRGKPLAFDDEDVRKAVELLKAENKEFDKVKSAQDI 1112
Query: 344 D---DEVRKWISEVGIERIGKRLVNSKEG-------PPTFEQPKMTLDKLLEYGRMLVQE 393
D DE+R+ + E E I + L EG E + + + ++ G +
Sbjct: 1113 DKLPDELRRKLEEKLRELICEWLAEKTEGYTGADIEAVCREAGMLAIREAVKPGMTKEEA 1172
Query: 394 QENVKRVQLADKYLSEA 410
+E KR+++ ++L +A
Sbjct: 1173 KEIAKRIRITKRHLEKA 1189
>gi|357121245|ref|XP_003562331.1| PREDICTED: uncharacterized protein LOC100845363 [Brachypodium
distachyon]
Length = 267
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 423 GSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSC 460
G FY + + K+ + GC DP + +DP A DDGSC
Sbjct: 222 GGFYEEGGDRCKLDIVSGCMDPTSNMFDPLATVDDGSC 259
>gi|332158080|ref|YP_004423359.1| cell division protein CDC48 [Pyrococcus sp. NA2]
gi|331033543|gb|AEC51355.1| cell division protein CDC48 [Pyrococcus sp. NA2]
Length = 795
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 28/164 (17%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + N A GE K IR+ +R+A ++
Sbjct: 555 LYGPPGTGKTLLAKAVATESEANFIAVRGPEILSKWVGESEKNIREIFRKA----RQAAP 610
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+FI+++DA A R G T V ++++N L M +EN V +I
Sbjct: 611 TVIFIDEIDAIAPRRG-TDVNRVTDRIINQLLTE------------MDGIQENTGVVVIA 657
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 316
N L L+R GR ++ P ++R T N+P
Sbjct: 658 ATNRPDILDPALLRPGRFDRLILVPAPDERARFEIFKVHTRNMP 701
>gi|414076388|ref|YP_006995706.1| AAA ATPase [Anabaena sp. 90]
gi|413969804|gb|AFW93893.1| AAA ATPase [Anabaena sp. 90]
Length = 529
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 34/164 (20%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYR 201
+PN K L++GI +G GKS + + + + G GE IRQ +
Sbjct: 264 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDVGRLFGGIVGESENRIRQMIQ 320
Query: 202 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260
A I C L+++++D G + GT + ++ V TL+ +
Sbjct: 321 LAEAI----SPCVLWMDEIDKAFGNINSGTDGDSGTSRRVFGTLIT-------------W 363
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 302
QE+ V ++ T N+ L A L+R GR ++ ++ PT ++R
Sbjct: 364 MQEKTSPVFMVATANNVQILPAELLRKGRFDEIFFLNLPTEKER 407
>gi|262372351|ref|ZP_06065630.1| AAA ATPase central domain-containing protein [Acinetobacter junii
SH205]
gi|262312376|gb|EEY93461.1| AAA ATPase central domain-containing protein [Acinetobacter junii
SH205]
Length = 518
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 32/229 (13%)
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
+R+ SL ++ GL A++DK +T + L ++ P + + G G GKS + +
Sbjct: 230 VREDSL--SVGGLAGLQAWLDKERPLLTAD-LRERGIRPPRGVLLVGVPGCGKSLSAKAI 286
Query: 180 FAKMGI-------NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 232
A G+ + G+ R ++A C L+I++++ G G ++
Sbjct: 287 AASWGLPLYRLDLSTIHGQYLGQSEGRLKDALTTADHVAPCVLWIDEIEKGLAGAGQSSD 346
Query: 233 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
++V L + QE RV ++ T ND S L L+R GR ++
Sbjct: 347 GGTATRLVGQFLY--------------WLQEATSRVFVVATANDVSMLPPELLRRGRFDE 392
Query: 293 FYWA--PTREDR-----IGVCSGIFR-TDNVPKEDIVKLVDTFPGQSID 333
++ PT +R I + G+ R D +++V+L + F G ++
Sbjct: 393 LFFVDLPTPIERKEIIEIYIRRGLKRDIDPTLMDELVQLSEGFAGSDLE 441
>gi|255938798|ref|XP_002560169.1| Pc14g01750 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584790|emb|CAP74316.1| Pc14g01750 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 390
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSIETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + S + + ++ E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHTSTVQKEGDIDFE 330
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|288958488|ref|YP_003448829.1| cell division protease [Azospirillum sp. B510]
gi|288910796|dbj|BAI72285.1| cell division protease [Azospirillum sp. B510]
Length = 593
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 19/148 (12%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQ-------RYREAAD 205
+ +VP L + G G GK+ + + G+ A + + R R
Sbjct: 181 MAGARVPKGLLLVGPPGTGKTMLAKAAAGEAGVPFFAASGSDFVEMFVGLGAARVRNLFK 240
Query: 206 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265
+ C LFI+++DA AG+ G +T ++ Q +N L V++ G+ E
Sbjct: 241 TARASAPCILFIDEIDALAGKRGESTSHSEREQTLNQLL---------VEMDGIV---EG 288
Query: 266 PRVPIIVTGNDFSTLYAPLIRDGRMEKF 293
+ +I N L A ++R GR ++
Sbjct: 289 GALVVIAATNRAEMLDAAVLRPGRFDRH 316
>gi|358388832|gb|EHK26425.1| hypothetical protein TRIVIDRAFT_111074 [Trichoderma virens Gv29-8]
Length = 391
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + S + ++ E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASSVVIDGDIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|435848784|ref|YP_007311034.1| AAA family ATPase, CDC48 subfamily [Natronococcus occultus SP4]
gi|433675052|gb|AGB39244.1| AAA family ATPase, CDC48 subfamily [Natronococcus occultus SP4]
Length = 742
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 127/334 (38%), Gaps = 90/334 (26%)
Query: 87 TRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ-----GLRQYSLDNTLDGLYIAPAFMDK 141
TRG + D + A M TH V + + +++ LR+Y + LD I P+ +D+
Sbjct: 370 TRGMPLSDDVDLAHMADETHGFVGADIESLTKEAAMKALRRYLPEIDLDEEDIPPSLIDR 429
Query: 142 VVVH---------------ITKNFLNLP-------------------NVKVPL------- 160
++V + + + LP +V+ PL
Sbjct: 430 MIVKREDFRGALNEVEPSAMREVLVELPKISWDDVGGLQTAKDQVQESVEWPLNNPERFD 489
Query: 161 ILGI--------WGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYR 201
LGI +G G GK+ + V + N + GE K IRQ +R
Sbjct: 490 RLGIDPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFR 549
Query: 202 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 261
+A + +F ++LDA A GG T V+ ++VN L +L G+
Sbjct: 550 KARQV----SPTVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL-- 594
Query: 262 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNV 315
EE V +I N + L+R GR ++ P E R + G +V
Sbjct: 595 -EEMENVMVIGATNRPDMIDPALLRSGRFDRLVMIGEPDVEGRERILDIHTQGTPMAADV 653
Query: 316 PKEDIVKLVDTFPG---QSIDFFGALRARVYDDE 346
++I ++ D + G +SI A+ A D+E
Sbjct: 654 NLQEIAEITDGYVGSDLESIAREAAIEALREDEE 687
>gi|219851580|ref|YP_002466012.1| proteasome-activating nucleotidase [Methanosphaerula palustris
E1-9c]
gi|254783493|sp|B8GGN4.1|PAN_METPE RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
AltName: Full=Proteasomal ATPase; AltName:
Full=Proteasome regulatory ATPase; AltName:
Full=Proteasome regulatory particle
gi|219545839|gb|ACL16289.1| 26S proteasome subunit P45 family [Methanosphaerula palustris
E1-9c]
Length = 412
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 22/143 (15%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 248
GE A+L+R+ + ++ KK +FI+++DA GA R T T ++ V+ TLM +
Sbjct: 229 GEGARLVRELF----ELAKKKSPSIIFIDEIDAIGASR---TESNTSGDREVHRTLMQLL 281
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV- 305
++ G N+ + V II N L L+R GR ++ AP E R+ +
Sbjct: 282 -----AEMDGFSNRGD---VRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSIL 333
Query: 306 ---CSGIFRTDNVPKEDIVKLVD 325
C+G+ V DI D
Sbjct: 334 NIHCAGMNIDKKVDIRDIATRTD 356
>gi|156056681|ref|XP_001594264.1| hypothetical protein SS1G_04071 [Sclerotinia sclerotiorum 1980]
gi|154701857|gb|EDO01596.1| hypothetical protein SS1G_04071 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 393
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + S + V E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEIMKIHASSVVIDGEVDFE 333
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|71034075|ref|XP_766679.1| AAA family ATPase [Theileria parva strain Muguga]
gi|68353636|gb|EAN34396.1| AAA family ATPase, putative [Theileria parva]
Length = 727
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 185 INGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATL 244
+N GE K IR ++ AA C +F +++D+ + Q V ++VN L
Sbjct: 525 LNKYVGESEKAIRLIFQRAA----TSSPCIIFFDEVDSLCSIRNDSNQ--VYERIVNQLL 578
Query: 245 MNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDR 302
++ G+ N+E V II N + ++R GR+EK ++ P +DR
Sbjct: 579 ---------TEMDGIQNRE---YVYIIAATNRPDIIDPAILRPGRLEKLFYVPLPDEDDR 626
Query: 303 IGVCSGIFRTDNVPKEDIV--KLVDTFPGQSIDFFGALR--ARVYDDEVRKWISEVGI 356
+ + + T +VP + +V K++ D R + + DE+R +SE +
Sbjct: 627 VDILLKL--TSDVPVDPLVNFKIIAQRTNGGADLASLCREASIIAIDEIRMSMSESSV 682
>gi|453082083|gb|EMF10131.1| 26S proteasome subunit P45 [Mycosphaerella populorum SO2202]
Length = 390
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIP 303
>gi|322697972|gb|EFY89746.1| proteasome regulatory particle subunit Rpt4 [Metarhizium acridum
CQMa 102]
Length = 391
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIP 304
>gi|389642247|ref|XP_003718756.1| 26S protease subunit rpt4 [Magnaporthe oryzae 70-15]
gi|351641309|gb|EHA49172.1| 26S protease subunit rpt4 [Magnaporthe oryzae 70-15]
gi|440468085|gb|ELQ37268.1| proteasome-activating nucleotidase [Magnaporthe oryzae Y34]
gi|440489045|gb|ELQ68726.1| proteasome-activating nucleotidase [Magnaporthe oryzae P131]
Length = 391
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P R+ + S + ++ E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEIGRLEILKIHASSVVMEGDIDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|358334917|dbj|GAA29771.2| 26S proteasome regulatory subunit T5 [Clonorchis sinensis]
Length = 439
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 34/211 (16%)
Query: 138 FMDKVVVHIT-KNFLNLPNVKVPLILGIWGGKGQGKSF-------QCELVFAKMG----I 185
++ VV+ +T K+ ++ P + ++G G GK+ Q + F K+ +
Sbjct: 198 LIEAVVLPMTHKDRFEAIGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 257
Query: 186 NGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATL 244
G+ AKL+R ++ A K+ + LFI++LDA G R ++ V T+
Sbjct: 258 QMFIGDGAKLVRDAFQLA----KEKEPSILFIDELDAIGTKRFDSE---RAGDREVQRTM 310
Query: 245 MNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDR 302
+ + + QL G + N + +I N L L+R GR+++ + AP E R
Sbjct: 311 LELLN-----QLDGF---QPNHNIKVIAATNRVDILDPALLRSGRLDRKIEFPAPNEEAR 362
Query: 303 IGVCSGIFRTDNVPK----EDIVKLVDTFPG 329
+ R NV K E++ + D F G
Sbjct: 363 ARIMQIHSRKMNVNKDVNFEELARCTDDFNG 393
>gi|209882419|ref|XP_002142646.1| 26S proteasome regulatory subunit 7 [Cryptosporidium muris RN66]
gi|209558252|gb|EEA08297.1| 26S proteasome regulatory subunit 7, putative [Cryptosporidium
muris RN66]
Length = 431
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 25/140 (17%)
Query: 164 IWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V + + GE A+++R+ +R A + K
Sbjct: 212 LYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRELFRLA----RSKKA 267
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C LFI+++DA G G + + + V T++ I + QL G ++ N + +++
Sbjct: 268 CILFIDEVDAIGGARGEESAH--GDHEVQRTMLEIVN-----QLDG-FDARGN--IKVLM 317
Query: 273 TGNDFSTLYAPLIRDGRMEK 292
N TL L+R GR+++
Sbjct: 318 ATNRPDTLDPALLRPGRLDR 337
>gi|448323197|ref|ZP_21512661.1| ATPase AAA [Natronococcus amylolyticus DSM 10524]
gi|445600383|gb|ELY54396.1| ATPase AAA [Natronococcus amylolyticus DSM 10524]
Length = 742
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 81/272 (29%)
Query: 87 TRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ-----GLRQYSLDNTLDGLYIAPAFMDK 141
TRG + D + A M TH V + + +++ LR+Y + LD I P+ +D+
Sbjct: 370 TRGMPLSDDVDLAHMADETHGFVGADIESLTKEAAMKALRRYLPEIDLDEEDIPPSLIDR 429
Query: 142 VVVH---------------ITKNFLNLP-------------------NVKVPL------- 160
++V + + + LP +V+ PL
Sbjct: 430 MIVKRQDFRGALNEVEPSAMREVLVELPKISWDDVGGLQDAQEQVQESVEWPLNNPDRFE 489
Query: 161 ILGI--------WGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYR 201
LGI +G G GK+ + V + N + GE K IRQ +R
Sbjct: 490 RLGIDPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFR 549
Query: 202 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 261
+A ++ +F ++LDA A GG T V+ ++VN L +L G+
Sbjct: 550 KA----RQVSPTVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL-- 594
Query: 262 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 293
EE V +I N + L+R GR ++
Sbjct: 595 -EEMENVMVIGATNRPDMIDPALLRSGRFDRL 625
>gi|410928217|ref|XP_003977497.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 2
[Takifugu rubripes]
Length = 319
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 201 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260
RE + + + C +F++++DA GR ++ T ++ + TLM + + Q+ G
Sbjct: 146 REMFNYARDHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF- 197
Query: 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDN 314
+ RV +I+ N TL L+R GR+++ P + R+ + S I +
Sbjct: 198 --DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGE 255
Query: 315 VPKEDIVKLVDTFPGQSI 332
+ E IVKL D F G +
Sbjct: 256 IDYEAIVKLSDGFNGADL 273
>gi|320581575|gb|EFW95795.1| 26S protease regulatory subunit 6A [Ogataea parapolymorpha DL-1]
Length = 426
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 34/203 (16%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLI 196
+ F NL +K P ++G G GK+ Q F K+ + G+ AKL+
Sbjct: 197 EKFKNL-GIKPPKGALMYGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLV 255
Query: 197 RQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 255
R +A ++ K+ +FI++LDA G R Q L+N Q
Sbjct: 256 R----DAFELAKEKSPTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLN--------Q 303
Query: 256 LPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRT- 312
L G + + RV ++ N TL L+R GR+++ + P+ E R + R
Sbjct: 304 LDGF---DSDDRVKVLAATNRVDTLDPALLRSGRLDRKIEFPLPSEEARAQILQIHARKM 360
Query: 313 ---DNVPKEDIVKLVDTFPGQSI 332
DNV +++ + D F G +
Sbjct: 361 TCDDNVNWQELARSTDEFNGAQL 383
>gi|154323898|ref|XP_001561263.1| hypothetical protein BC1G_00348 [Botryotinia fuckeliana B05.10]
gi|347829946|emb|CCD45643.1| BcPIO6, similar to 26S protease regulatory subunit S10b
[Botryotinia fuckeliana]
Length = 393
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
+ II+ N TL L+R GR+++ P + R+ + S + V E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEIMKIHASSVVIDGEVDFE 333
Query: 319 DIVKLVDTFPGQSI 332
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|70606569|ref|YP_255439.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
gi|449066788|ref|YP_007433870.1| SAV protein-like protein [Sulfolobus acidocaldarius N8]
gi|449069061|ref|YP_007436142.1| SAV protein-like protein [Sulfolobus acidocaldarius Ron12/I]
gi|30088847|gb|AAP13472.1| AAA family ATPase [Sulfolobus acidocaldarius]
gi|68567217|gb|AAY80146.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
gi|449035296|gb|AGE70722.1| SAV protein-like protein [Sulfolobus acidocaldarius N8]
gi|449037569|gb|AGE72994.1| SAV protein-like protein [Sulfolobus acidocaldarius Ron12/I]
Length = 773
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 27/173 (15%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + G N A GE K IR+ +R+A ++
Sbjct: 508 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 563
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+F +++D+ A G +T V ++VN L ++ G+ E V +I
Sbjct: 564 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLL---------AEMDGIEKLEN---VVVIA 611
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 325
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 612 ATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 664
>gi|374292124|ref|YP_005039159.1| Cell division protein FtsH; ATP-dependent metalloprotease
[Azospirillum lipoferum 4B]
gi|357424063|emb|CBS86928.1| Cell division protein FtsH; ATP-dependent metalloprotease
[Azospirillum lipoferum 4B]
Length = 593
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 30/180 (16%)
Query: 147 TKNFLNLPN------VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQ-- 198
T FL P +VP + + G G GK+ + + G+ A + +
Sbjct: 169 TVQFLKDPRRFAMAGARVPKGILLVGPPGTGKTMLAKAAAGEAGVPFFAASGSDFVEMFV 228
Query: 199 -----RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 253
R R + C LFI+++DA AG+ G + ++ Q +N L
Sbjct: 229 GLGAARVRSLFKTARASAPCILFIDEIDALAGKRGESNSHSEREQTLNQLL--------- 279
Query: 254 VQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG 308
V++ G+ E V +I N L A ++R GR ++ RE +GV +G
Sbjct: 280 VEMDGIV---EGGAVVVIAATNRAEMLDAAVLRPGRFDRHIHVSLPDVAGREAILGVHAG 336
>gi|302925717|ref|XP_003054150.1| 26S proteasome regulatory complex, ATPase RPT4 [Nectria
haematococca mpVI 77-13-4]
gi|256735091|gb|EEU48437.1| 26S proteasome regulatory complex, ATPase RPT4 [Nectria
haematococca mpVI 77-13-4]
Length = 391
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIP 304
>gi|352681678|ref|YP_004892202.1| AAA family ATPase [Thermoproteus tenax Kra 1]
gi|350274477|emb|CCC81122.1| AAA family ATPase, possible cell division control protein cdc48
[Thermoproteus tenax Kra 1]
Length = 730
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 43/217 (19%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAA 204
++ P + ++G G GK+ + V + G N A GE K++R+ +++A
Sbjct: 484 LRAPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFQKA- 542
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
+ C +FI+++DA A G V ++V L ++ G+ E
Sbjct: 543 ---RMAAPCVVFIDEIDALASARGLGADSFVTERVVAQML---------AEMDGIRTLEN 590
Query: 265 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------ 316
I+V G N + L+R GR ++ + P + + + + T NVP
Sbjct: 591 -----IVVIGATNRPDLVDPALLRPGRFDRIIYVPPPDFKARLEIFLIHTRNVPLAKDVD 645
Query: 317 KEDIVKLVDTFPGQSIDF------FGALRARVYDDEV 347
E++ + + + G I+ F ALR + EV
Sbjct: 646 LEELARRTEGYSGADIELVVREATFLALREDINAKEV 682
>gi|124485689|ref|YP_001030305.1| proteasome-activating nucleotidase [Methanocorpusculum labreanum Z]
gi|124363230|gb|ABN07038.1| 26S proteasome subunit P45 family [Methanocorpusculum labreanum Z]
Length = 429
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 164 IWGGKGQGKSFQCELV-------FAKMG----INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V F +M ++ GE A+L+R + A D+ +K
Sbjct: 205 LYGPPGTGKTLIAKAVANNAGVPFLRMAGSELVHKYIGEGAQLVRDLFEMARDLAEKNNG 264
Query: 213 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
+FI+++DA G+ R T T + V TLM + ++ G +N N R I+
Sbjct: 265 VVVFIDEIDAVGSMR---TNDGTSGSAEVQRTLMQLL-----AEMDG-FNNRGNIR--IM 313
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWAP 297
N L A L+R GR ++ P
Sbjct: 314 AATNRPDMLDAALLRPGRFDRLIKIP 339
>gi|425769978|gb|EKV08455.1| Proteasome regulatory particle subunit Rpt4, putative [Penicillium
digitatum Pd1]
gi|425771523|gb|EKV09964.1| Proteasome regulatory particle subunit Rpt4, putative [Penicillium
digitatum PHI26]
Length = 390
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V + + N GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIP 303
>gi|254167175|ref|ZP_04874028.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
gi|197624031|gb|EDY36593.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
Length = 394
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 43/190 (22%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 248
GE AKL+R+ + D+ +K +FI+++DA GA R+ T ++ V TLM +
Sbjct: 214 GEGAKLVRELF----DLARKKAPSIVFIDEIDAIGARRLDMATS---GDREVQRTLMQLL 266
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 306
+L G E V II N L L+R GR ++ P E RI +
Sbjct: 267 -----AELDGF---EPLDNVKIIAATNRPDILDEALLRPGRFDRIIQVPYPDYEARIEIL 318
Query: 307 SGIFRTDN---VPKEDIVKLVDTFPGQSI----------------------DFFGALRAR 341
R N V E I K D F G + DF A+R
Sbjct: 319 KIHTRRMNLKDVNLEKIAKKTDGFSGADLKVICMEAGMFAIRDERDYVTQEDFENAIRKF 378
Query: 342 VYDDEVRKWI 351
++ D++RK I
Sbjct: 379 LHADDLRKEI 388
>gi|302870854|ref|YP_003839490.1| DeoR family transcriptional regulator [Caldicellulosiruptor
obsidiansis OB47]
gi|302573713|gb|ADL41504.1| transcriptional regulator, DeoR family [Caldicellulosiruptor
obsidiansis OB47]
Length = 250
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 210 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269
GK+ FI+D D G TTQY N +NA + I N N+ Y N V
Sbjct: 83 GKLAASFIHDGDTIILDSGTTTQYIARN--INAKNITIITNSVNIA----YELSNNENVE 136
Query: 270 IIVTGNDFSTLYAPLIRD 287
+IVTG T L+ D
Sbjct: 137 VIVTGGVIRTKTKALVGD 154
>gi|18977335|ref|NP_578692.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638]
gi|397651469|ref|YP_006492050.1| cell division protein CDC48 [Pyrococcus furiosus COM1]
gi|18893012|gb|AAL81087.1| cell division control protein 48, aaa family [Pyrococcus furiosus
DSM 3638]
gi|393189060|gb|AFN03758.1| cell division protein CDC48 [Pyrococcus furiosus COM1]
Length = 837
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 27/171 (15%)
Query: 164 IWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + + I G GE K IR+ +R+A ++
Sbjct: 583 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 638
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
+FI+++DA A GG V ++++N L M +EN V +I
Sbjct: 639 AIIFIDEIDAIAPARGGYEGERVTDRLINQLLTE------------MDGIQENSGVVVIG 686
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 323
N + L+R GR ++ P +++ + T +P D V L
Sbjct: 687 ATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRGMPLADDVDL 737
>gi|429193621|ref|YP_007179299.1| AAA ATPase [Natronobacterium gregoryi SP2]
gi|448326640|ref|ZP_21515988.1| ATPase AAA [Natronobacterium gregoryi SP2]
gi|429137839|gb|AFZ74850.1| AAA family ATPase, CDC48 subfamily [Natronobacterium gregoryi SP2]
gi|445610829|gb|ELY64597.1| ATPase AAA [Natronobacterium gregoryi SP2]
Length = 743
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 28/142 (19%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + N + GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 213 CCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
+F ++LDA A GR GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVI 604
Query: 272 VTGNDFSTLYAPLIRDGRMEKF 293
N + L+R GR ++
Sbjct: 605 GATNRPDMIDPALLRSGRFDRL 626
>gi|15899170|ref|NP_343775.1| AAA ATPase [Sulfolobus solfataricus P2]
gi|284173716|ref|ZP_06387685.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
gi|384432764|ref|YP_005642122.1| Microtubule-severing ATPase [Sulfolobus solfataricus 98/2]
gi|13815723|gb|AAK42565.1| AAA family ATPase [Sulfolobus solfataricus P2]
gi|261600918|gb|ACX90521.1| Microtubule-severing ATPase [Sulfolobus solfataricus 98/2]
Length = 607
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 24/190 (12%)
Query: 153 LPNVKVPLILGI--WGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYREAADIIKK- 209
L ++VP I GI +G G GK+ + + + + A A+++ + Y A IK+
Sbjct: 370 LEQLRVPPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKGYEGAIAAIKEV 429
Query: 210 ------GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K + +++LDA A + + Y ++++VN L ++ G+ + +
Sbjct: 430 FNRARENKPAIILLDELDAIASKRSYKS-YGDSSKIVNQLL---------TEMDGIRSLK 479
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIV 321
E V +I T N + L+R GR +K P RE+R+ + + K D
Sbjct: 480 E---VVVIGTTNRLKAIDPALLRPGRFDKIIHMPLPNREERLDILMKYIGKEECEKVDCG 536
Query: 322 KLVDTFPGQS 331
L D G S
Sbjct: 537 ILADQTEGYS 546
>gi|330835721|ref|YP_004410449.1| AAA family ATPase [Metallosphaera cuprina Ar-4]
gi|329567860|gb|AEB95965.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
Ar-4]
Length = 768
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEP----AKLIRQRYREAA 204
++ V+ P + ++G G GK+ + V + G N A +K + + R
Sbjct: 488 DYYETAGVEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESERAIR 547
Query: 205 DIIKKGKM---CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 261
+I +K +M +F +++DA A G ++ V ++VN L ++ G+ N
Sbjct: 548 EIFRKARMYAPSVIFFDEIDAVAPMRGISSDSGVTERLVNQLL---------AEMDGIEN 598
Query: 262 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ V I+ N L L+R GR EK + P
Sbjct: 599 LDN---VVIVAATNRPDILDPALLRPGRFEKLVYVP 631
>gi|385772237|ref|YP_005644803.1| AAA ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
gi|323476351|gb|ADX81589.1| AAA ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
Length = 606
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 24/190 (12%)
Query: 153 LPNVKVPLILGI--WGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYREAADIIKK- 209
L +KVP I GI +G G GK+ + + + + A A+++ + Y A IK+
Sbjct: 370 LEQLKVPPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKGYEGAIAAIKEV 429
Query: 210 ------GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K + +++LDA A + + Y ++++VN L ++ G+ + +
Sbjct: 430 FNRARENKPAIVLLDELDAIASKRNYKS-YADSSKIVNQLL---------TEMDGIRSLK 479
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIV 321
E V +I T N + L+R GR +K P RE+R+ + + K D
Sbjct: 480 E---VVVIGTTNRLKAIDPALLRPGRFDKIIHMPLPNREERLDILMKYIGKEECEKVDCE 536
Query: 322 KLVDTFPGQS 331
L + G S
Sbjct: 537 ILAEQTEGYS 546
>gi|156087018|ref|XP_001610916.1| 26S protease regulatory subunit 7 [Babesia bovis T2Bo]
gi|154798169|gb|EDO07348.1| 26S protease regulatory subunit 7, putative [Babesia bovis]
Length = 425
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249
GE A+L+R+ ++ A + K C LFI+++DA G G + + + V T++ I +
Sbjct: 243 GEGARLVRELFQMA----RSKKACILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN 296
Query: 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
QL G ++ N + +I+ N TL L+R GR+++
Sbjct: 297 -----QLDG-FDARGN--IKVIMATNRPDTLDPALLRPGRIDR 331
>gi|145517722|ref|XP_001444744.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412166|emb|CAK77347.1| unnamed protein product [Paramecium tetraurelia]
Length = 442
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 45/213 (21%)
Query: 164 IWGGKGQGKSF-------QCELVFAKM----GINGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + E F ++ + GE A+++R+ ++ A + K
Sbjct: 225 MYGPPGTGKTLTARAVANRTEACFIRVIGSELVQKYVGEGARMVRELFQMA----RTKKA 280
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F +++DA +GG N+ V T++ I + QL G + + +++
Sbjct: 281 CIIFFDEIDA----IGGARHDDGNDNDVQRTMLEIVN-----QLDGF---DSRGNIKVLM 328
Query: 273 TGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCSGIFRT----DNVPKEDIVKLVDT 326
N TL L+R GR+++ + P E R G+ RT N+ E + +L
Sbjct: 329 ATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAGIFKIHARTMSMEKNIRYELLARLCPN 388
Query: 327 FPGQSIDFFG------ALRARVYDDEVRKWISE 353
G I A+RAR RK ISE
Sbjct: 389 TTGADIRSVCTEAGMFAIRAR------RKAISE 415
>gi|448315080|ref|ZP_21504733.1| ATPase AAA [Natronococcus jeotgali DSM 18795]
gi|445612339|gb|ELY66065.1| ATPase AAA [Natronococcus jeotgali DSM 18795]
Length = 742
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 103/272 (37%), Gaps = 81/272 (29%)
Query: 87 TRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ-----GLRQYSLDNTLDGLYIAPAFMDK 141
TRG + D + A M TH V + + +++ LR+Y + LD I P+ +D+
Sbjct: 370 TRGMPLSDDVDLAHMADETHGFVGADIESLTKEAAMKALRRYLPEIDLDEEDIPPSLIDR 429
Query: 142 VVVH---------------ITKNFLNLP-------------------NVKVPL------- 160
++V + + + LP +V+ PL
Sbjct: 430 MIVKREDFRGALNEVEPSAMREVLVELPKISWDDVGGLHTAKEQVQESVEWPLNNPERFE 489
Query: 161 ILGI--------WGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYR 201
LGI +G G GK+ + V + N + GE K IRQ +R
Sbjct: 490 RLGIDPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFR 549
Query: 202 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 261
+A + +F ++LDA A GG T V+ ++VN L +L G+
Sbjct: 550 KARQV----SPTVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL-- 594
Query: 262 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 293
EE V +I N + L+R GR ++
Sbjct: 595 -EEMENVMVIGATNRPDMIDPALLRSGRFDRL 625
>gi|146302995|ref|YP_001190311.1| AAA ATPase [Metallosphaera sedula DSM 5348]
gi|145701245|gb|ABP94387.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348]
Length = 768
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEP----AKLIRQRYREAADIIKKGK 211
V+ P + ++G G GK+ + V + G N A +K + + R +I +K +
Sbjct: 495 VEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESERAIREIFRKAR 554
Query: 212 M---CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268
M +F +++DA A G ++ V ++VN L ++ G+ N + V
Sbjct: 555 MYAPSVIFFDEIDAIAPMRGISSDSGVTERLVNQLL---------AEMDGIENLDN---V 602
Query: 269 PIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
I+ N L L+R GR EK + P
Sbjct: 603 VIVAATNRPDILDPALLRPGRFEKLMYVP 631
>gi|448633745|ref|ZP_21674244.1| cell division control protein 48 [Haloarcula vallismortis ATCC
29715]
gi|445750436|gb|EMA01874.1| cell division control protein 48 [Haloarcula vallismortis ATCC
29715]
Length = 757
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 22/196 (11%)
Query: 185 INGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG-RMGGTTQYTVNNQMVNAT 243
+N GE K +R+ + +A ++ +F +++D+ AG R GGTT V ++V+
Sbjct: 537 LNKFVGESEKGVREVFSKA----RENAPTVVFFDEIDSIAGERGGGTTDSGVGERVVSQL 592
Query: 244 LMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI 303
L +L G+ EE V ++ T N + L+R GR+++ P ++
Sbjct: 593 L---------TELDGI---EEMENVVVVATTNRPDLIDDALLRPGRLDRHVHVPVPDEDA 640
Query: 304 GVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD----EVRKWISEVGIERI 359
T N P D V L D ++ + GA V + R++I+ V E I
Sbjct: 641 RRAIFQVHTRNKPLADGVDL-DELARRTDGYVGADIEAVAREASMAATREFINSVDPEEI 699
Query: 360 GKRLVNSKEGPPTFEQ 375
G + N + FE
Sbjct: 700 GDSVSNVRVTMDHFEH 715
>gi|327404187|ref|YP_004345025.1| hypothetical protein Fluta_2201 [Fluviicola taffensis DSM 16823]
gi|327319695|gb|AEA44187.1| hypothetical protein Fluta_2201 [Fluviicola taffensis DSM 16823]
Length = 169
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 439 EGCTDPAAANYDPTARSDDGSCNY 462
EGCTD +A+NY+ A+ D+GSC Y
Sbjct: 25 EGCTDSSASNYNEDAKKDNGSCTY 48
>gi|269121222|ref|YP_003309399.1| ATP-dependent metalloprotease FtsH [Sebaldella termitidis ATCC
33386]
gi|268615100|gb|ACZ09468.1| ATP-dependent metalloprotease FtsH [Sebaldella termitidis ATCC
33386]
Length = 682
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 37/197 (18%)
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMG-----INGN------AGEPAKLIRQRYREAAD 205
+VP + + G G GK+ + V + G I+G+ G A +R + +A
Sbjct: 233 RVPKGVLLLGRPGTGKTLLAKAVAGESGASFFSISGSEFVEMFVGVGASRVRDLFEKA-- 290
Query: 206 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADNPTNVQLPGMYNQ 262
KK + +FI+++DA GR GT ++ N+ Q +N L V++ G
Sbjct: 291 --KKSRPAIIFIDEIDA-VGRKRGTGKHGGNDEREQTLNQLL---------VEMDGF--- 335
Query: 263 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR----TDNVP 316
E + ++ ++ N L L+R GR ++ AP + RI + + D+V
Sbjct: 336 ETDEKIIVVAATNREDVLDPALLRAGRFDRRISVDAPDVQGRIAILEVHAKNKKLADDVK 395
Query: 317 KEDIVKLVDTFPGQSID 333
EDI K+ F G ++
Sbjct: 396 LEDIAKITPGFVGADLE 412
>gi|90418162|ref|ZP_01226074.1| putative peptidase, M41 family [Aurantimonas manganoxydans
SI85-9A1]
gi|90337834|gb|EAS51485.1| putative peptidase, M41 family [Aurantimonas manganoxydans
SI85-9A1]
Length = 643
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 34/181 (18%)
Query: 166 GGKGQGKSFQCELVFAKMGIN--------------GNAGEPAKLIRQRYREAADIIKKGK 211
G G GK+ + + G++ G+ G+ K IR + AA K
Sbjct: 261 GPPGTGKTLLAQAIANSAGVHFIATSYAQWQSNRSGHLGDVTKAIRAVFEAAA----KNL 316
Query: 212 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
+FI+++D GR G + L+ D G+ +E V +I
Sbjct: 317 PAIVFIDEIDTVQGRGGSDRSADAWFTAIVTCLLECLD--------GIGRREG---VVVI 365
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRT---DNVPKEDIVKLVDTFP 328
ND + L A L+R GR+++ +W ++ +GIFR D + I ++ F
Sbjct: 366 AACNDDANLDAALVRSGRLDRRFWIDLPDE--ASLAGIFRHHLGDGIDASAIDRVATLFA 423
Query: 329 G 329
G
Sbjct: 424 G 424
>gi|260435291|ref|ZP_05789261.1| putative Cell division protease FtsH family protein [Synechococcus
sp. WH 8109]
gi|260413165|gb|EEX06461.1| putative Cell division protease FtsH family protein [Synechococcus
sp. WH 8109]
Length = 599
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 105/278 (37%), Gaps = 61/278 (21%)
Query: 149 NFLNLPNV------KVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGE 191
FLN P K+P + + G G GK+ + + + G+ G
Sbjct: 170 TFLNQPEAFIRLGAKIPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSIAASEFVELFVGV 229
Query: 192 PAKLIRQRYREAADIIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMN 246
A +R +R+A K+ C +FI+++DA GAG GG + Q +N L
Sbjct: 230 GASRVRDLFRQA----KEKSPCIVFIDEIDAVGRQRGAGIGGGNDE---REQTLNQLLTE 282
Query: 247 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIG 304
M EEN V ++ N L A L+R GR ++ P R R
Sbjct: 283 ------------MDGFEENSGVILLAATNRADVLDAALLRPGRFDRRIDVGLPDRRGREA 330
Query: 305 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA-----------LRARVYDDEVRKWISE 353
+ + RT P +D V L D + ++ F GA L AR + ++ E
Sbjct: 331 ILAVHARTR--PLDDSVSLSD-WASRTPGFSGADLANLLNEAAILTARQNMLSIGQFQLE 387
Query: 354 VGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 391
+ERI L N P + K L E G LV
Sbjct: 388 GALERITMGLSNR----PLQDSAKKRLIAYHEVGHALV 421
>gi|163786266|ref|ZP_02180714.1| hypothetical protein FBALC1_13812 [Flavobacteriales bacterium
ALC-1]
gi|159878126|gb|EDP72182.1| hypothetical protein FBALC1_13812 [Flavobacteriales bacterium
ALC-1]
Length = 1348
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 440 GCTDPAAANYDPTARSDDGSCNY 462
GCTDP + +Y+P A DDGSC Y
Sbjct: 532 GCTDPVSCSYNPEATLDDGSCTY 554
>gi|145511876|ref|XP_001441860.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409121|emb|CAK74463.1| unnamed protein product [Paramecium tetraurelia]
Length = 391
Score = 38.5 bits (88), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSF-----QCEL------VFAKMGINGNAGEPAKLIRQRYREAA 204
VK P ++G G GK+ C + + A ++ GE A++IR+ + A
Sbjct: 166 VKPPKGCLMYGPPGTGKTLIARALACNVQAKFLKIVASSIVDKYIGESARVIREMFTYA- 224
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR + T ++ + TLM + + QL G ++
Sbjct: 225 ---KENQPCIIFMDEIDAIGGRR--FSDGTSADREIQRTLMELLN-----QLDGF---DD 271
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSGIFRTD-NVPKE 318
+V +++ N L L+R GR+++ P R D + + S T V E
Sbjct: 272 LGKVKVVMATNRPDILDPALLRPGRLDRKVEIPLPNEQARYDILKIHSRTITTKGEVDFE 331
Query: 319 DIVKLVDTFPGQSI 332
+ KL + F G +
Sbjct: 332 QLAKLCEEFNGADL 345
>gi|307181554|gb|EFN69115.1| Peroxisome biogenesis factor 1 [Camponotus floridanus]
Length = 326
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 90/198 (45%), Gaps = 28/198 (14%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLI-------RQRYRE 202
F N P +K+ + ++G G GK+ + + + G+N + + +L+ + R
Sbjct: 120 FKNAP-IKLQSGVLLYGMPGTGKTMLAKAIAGECGVNLISIKGPELLSKYIGVSEESVRN 178
Query: 203 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 262
+ ++ K C LF ++ D+ A R G + V +++VN L QL G+ ++
Sbjct: 179 VFERARRAKPCVLFFDEFDSLAPRRGHDST-GVTDRVVNQLL---------TQLDGVEDR 228
Query: 263 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE--DRIGVCSGIFRTDNVPK--- 317
E V ++ + L L+R GR++K P + +R + + + + N+ K
Sbjct: 229 EG---VAVVAASSRPDLLDPALLRPGRLDKCLHCPLPDMLEREAIFAVLCDSQNIDKAKL 285
Query: 318 --EDIVKLVDTFPGQSID 333
+++ +L D F G I+
Sbjct: 286 DLKELSQLSDGFTGADIN 303
>gi|254167708|ref|ZP_04874558.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
gi|289597057|ref|YP_003483753.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
gi|197623236|gb|EDY35801.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
gi|289534844|gb|ADD09191.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
Length = 394
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 43/190 (22%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 248
GE AKL+R+ + D+ +K +FI+++DA GA R+ T ++ V TLM +
Sbjct: 214 GEGAKLVRELF----DLARKKAPSIVFIDEIDAIGARRLDMATS---GDREVQRTLMQLL 266
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRI 303
+L G E V II N L L+R GR ++ P R + +
Sbjct: 267 -----AELDGF---EPLDNVKIIAATNRPDILDEALLRPGRFDRIIQVPYPDYDARIEIL 318
Query: 304 GVCSGIFRTDNVPKEDIVKLVDTFPGQSI----------------------DFFGALRAR 341
+ + +V E I K D F G + DF A+R
Sbjct: 319 KIHTRRMNLKDVNLEKIAKKTDGFSGADLKVICMEAGMFAIRDERDYVTQEDFENAIRKF 378
Query: 342 VYDDEVRKWI 351
++ D++RK I
Sbjct: 379 LHADDLRKEI 388
>gi|385774951|ref|YP_005647519.1| AAA ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
gi|323473699|gb|ADX84305.1| AAA ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
Length = 606
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 24/190 (12%)
Query: 153 LPNVKVPLILGI--WGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYREAADIIKK- 209
L +KVP I GI +G G GK+ + + + + A A+++ + Y A IK+
Sbjct: 370 LEQLKVPPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKGYEGAIAAIKEV 429
Query: 210 ------GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K + +++LDA A + + Y ++++VN L ++ G+ + +
Sbjct: 430 FNRARENKPAIVLLDELDAIASKRNYKS-YADSSKIVNQLL---------TEMDGIRSLK 479
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIV 321
E V +I T N + L+R GR +K P RE+R+ + + K D
Sbjct: 480 E---VVVIGTTNRLKAIDPALLRPGRFDKIIHMPLPNREERLDILMKYIGKEECEKVDCE 536
Query: 322 KLVDTFPGQS 331
L + G S
Sbjct: 537 ILAEQTEGYS 546
>gi|440492660|gb|ELQ75208.1| 26S proteasome regulatory complex, ATPase RPT1 [Trachipleistophora
hominis]
Length = 415
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLI 196
+ F+NL + P + ++G G GK+ + V + I GE A+++
Sbjct: 183 EKFVNL-GIDPPKGVLLYGPPGTGKTLLAKAVANRTNACFIRVIGSELIQKYVGEGARMV 241
Query: 197 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
R+ + ++ ++ K C +F +++DA GGT ++ V T++ + + QL
Sbjct: 242 REIF----ELGRRKKACVIFFDEVDA----FGGTRYAESDDNEVQRTMLELIN-----QL 288
Query: 257 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDN 314
G N+ + +I+ N TL L+R GR+++ + P E R+ + R +
Sbjct: 289 DGFDNR---GNIKVIMATNRPDTLDPALLRPGRLDRKVEFSLPDLEGRVKILKIHTRVMS 345
Query: 315 VPK 317
V K
Sbjct: 346 VEK 348
>gi|430750029|ref|YP_007212937.1| ATP-dependent Zn protease [Thermobacillus composti KWC4]
gi|430733994|gb|AGA57939.1| ATP-dependent Zn protease [Thermobacillus composti KWC4]
Length = 499
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 190 GEPAKLIRQRYREAADIIKK-GK-MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 247
G A IR +REA +K GK +FI+++D GR G Q+ +Q +N L +
Sbjct: 145 GVGASRIRDLFREARQKAQKTGKNSAVIFIDEIDVIGGRRDGG-QHREYDQTLNQLLTEM 203
Query: 248 ADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292
TN E+PR+ +I N TL + L+R GR ++
Sbjct: 204 DGIQTN----------ESPRILLIAATNRKDTLDSALLRPGRFDR 238
>gi|357979439|emb|CCE67060.1| cell division protein FtsH [Candidatus Mycoplasma haemominutum
'Birmingham 1']
Length = 757
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
+R RE D KK C +FI+++DA AG+ GG N Q +N L ++
Sbjct: 371 KRVRELFDKAKKLSPCIIFIDEIDALAGKRGGKFNIQGNEQTINQLLS---------EMD 421
Query: 258 GMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEK 292
G N + II+ G N ++ ++R GR ++
Sbjct: 422 GF-----NTQAGIIIIGATNRLESIDEAVLRPGRFDR 453
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,398,524,683
Number of Sequences: 23463169
Number of extensions: 324078810
Number of successful extensions: 778427
Number of sequences better than 100.0: 971
Number of HSP's better than 100.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 666
Number of HSP's that attempted gapping in prelim test: 777116
Number of HSP's gapped (non-prelim): 1036
length of query: 464
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 318
effective length of database: 8,933,572,693
effective search space: 2840876116374
effective search space used: 2840876116374
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)