BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012418
(464 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
Length = 476
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/479 (82%), Positives = 429/479 (89%), Gaps = 18/479 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA STVGAVN A PL +NGS +R SLVPS+ F G SLKK ++K + S +FK+V+
Sbjct: 1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVA 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM+SGTHYAVMSSYDYISQ
Sbjct: 58 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 177
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM
Sbjct: 178 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 237
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRARVY DEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEV 357
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKW+SEVG++ IGK+LVNSKEGPP+FEQPKMT+DKLL YG MLVQEQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYM 417
Query: 408 SEAALGDANDDAIKNGSFY-GKAAQQV-KVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
SEAALGDAN+DAIK G+FY G+AAQQV VPVPEGCTDP A NYDPTARSDDGSC Y+F
Sbjct: 418 SEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Arabidopsis thaliana GN=RCA PE=1 SV=2
Length = 474
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/476 (77%), Positives = 407/476 (85%), Gaps = 14/476 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
AKMGIN GNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 409 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
+AALGDAN DAI G+FYGK AQQV +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 419 QAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1
Length = 435
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/438 (83%), Positives = 396/438 (90%), Gaps = 16/438 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA STVGAVN A PL +NGS +R SLVPS+ F G SLKK ++K + S +FK+V+
Sbjct: 1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVA 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM+SGTHYAVMSSYDYISQ
Sbjct: 58 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 177
Query: 179 VFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 227
VFAKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM
Sbjct: 178 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 237
Query: 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 288 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 347
GRMEKFYWAPTREDRIGVC GIFRTDNVP+EDIVK+VD FPGQSIDFFGALRARVYDDEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEV 357
Query: 348 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 407
RKW+SEVG++ IGK+LVNSKEGPPTFEQPKMT+DKLL+YG MLV+EQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYM 417
Query: 408 SEAALGDANDDAIKNGSF 425
SEAALGDAN DAIK G+F
Sbjct: 418 SEAALGDANQDAIKRGTF 435
>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2
Length = 466
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/448 (80%), Positives = 393/448 (87%), Gaps = 16/448 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITK 148
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 138
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIR 197
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 198
Query: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 199 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 258
Query: 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 317
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 259 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 318
Query: 318 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 377
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 319 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378
Query: 378 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQV-KVP 436
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG+ AQQ +P
Sbjct: 379 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLP 438
Query: 437 VPEGCTDPAAANYDPTARSDDGSCNYQF 464
VPEGCTDP A N+DPTARSDDGSC Y F
Sbjct: 439 VPEGCTDPVAKNFDPTARSDDGSCLYTF 466
>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Spinacia oleracea PE=1 SV=2
Length = 472
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/475 (73%), Positives = 394/475 (82%), Gaps = 14/475 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VSTVGA A PL +NGSS + VP+S FLG SLKK ++ + S V +
Sbjct: 1 MATAVSTVGAATRA-PLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+EEK T D+WA LA D SDDQ DI RGKGMVD+LFQAP ++GTH + SS++Y SQGL
Sbjct: 60 ENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 117
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R+Y +DN L YIAPAFMDK+VVHITKNFLNLPN+K+PLILG+WGGKGQGKSFQCELVF
Sbjct: 118 RKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 177
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AK+GIN GNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGG
Sbjct: 178 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 297
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTREDRIGVC+GIF+TD VP E +VKLVD FPGQSIDFFGALRARVY DEVRK
Sbjct: 298 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRK 357
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
W++ VG++ +GK+LVNSK+GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S
Sbjct: 358 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
Query: 410 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 464
AALGDAN DAI G+F+GKAAQQV +PV +GCTDP A NYDPTARSDDGSC Y
Sbjct: 418 AALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472
>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1
Length = 464
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/446 (77%), Positives = 386/446 (86%), Gaps = 14/446 (3%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQ 198
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGIN GNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 318
MYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 319 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 378
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 379 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVP 438
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYGK AQQ +PVP
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVP 438
Query: 439 EGCTDPAAANYDPTARSDDGSCNYQF 464
EGCTD A NYDPTARSDDGSC Y F
Sbjct: 439 EGCTDQNAKNYDPTARSDDGSCLYTF 464
>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Malus domestica GN=RCA PE=2 SV=1
Length = 437
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/438 (79%), Positives = 387/438 (88%), Gaps = 12/438 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+G+VN A P +NGSS + VPSS FLG SLKKV+S+ + ++ S S ++V+
Sbjct: 1 MATAVSTIGSVNRAPP-NLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVAS 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE+KQT +DRW GLA+D SDDQQDITRGKG VD+LFQAP SGTH+A+MSSY+YIS GL
Sbjct: 60 VDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+ DN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AKM I+ GNAGEPAKLIRQRYREAADII+KGKMC LFINDLDAGAGR+GG
Sbjct: 180 AKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGG 239
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
MEKFYWAPTREDRIGVC GIFR+DNV KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 409
WI+ VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 410 AALGDANDDAIKNGSFYG 427
AALGDAN DA+ G+FYG
Sbjct: 420 AALGDANSDAMNTGTFYG 437
>sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Vigna radiata var. radiata GN=RCA PE=2 SV=2
Length = 439
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/441 (78%), Positives = 388/441 (87%), Gaps = 18/441 (4%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN A+ L +NGS + P+S F G SLKK V+S+V ++ + SFK+V+
Sbjct: 1 MAASVSTVGAVNRAI-LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E +E +QT++DRW GLAYDISDDQQDITRGKGMVD LFQAPM++GTHYAVMSSY+Y+
Sbjct: 60 AEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GLRQ LDN DG YIAPAF+DK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 STGLRQ--LDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQC 177
Query: 177 ELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
ELVFAKMGIN GNAGEPAKLIRQRYREAAD+I KGKMC LFINDLDAGAG
Sbjct: 178 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAG 237
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLI
Sbjct: 238 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLI 297
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRMEKFYWAPTR+DR+GVC GIFRTD VP+EDI KLVDTFPGQSIDFFGALRARVYDD
Sbjct: 298 RDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDD 357
Query: 346 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
EVRKWIS VG++ GK+LVNSKEGPPTF+QPKM+LDKLL+YG MLVQEQENVKRVQLADK
Sbjct: 358 EVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADK 417
Query: 406 YLSEAALGDANDDAIKNGSFY 426
YL+EAALG+AN+DAIK+GSF+
Sbjct: 418 YLNEAALGNANEDAIKSGSFF 438
>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Nicotiana tabacum PE=1 SV=1
Length = 442
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/441 (78%), Positives = 380/441 (86%), Gaps = 16/441 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MA VST+GAVN PL +N S + VPS+ F GK+LKKV K VS ++ +KS ++V+
Sbjct: 1 MATSVSTIGAVNKT-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E D +KQT DRW GL D SDDQQDITRGKGMVD+LFQAP +GTH+AV+ SY+Y+
Sbjct: 60 EQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYV 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
SQGLRQY+LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 SQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 179
Query: 177 ELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
ELVF KMGIN GNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 239
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 299
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRMEKFYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDD 359
Query: 346 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
EVRKW+S GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADK
Sbjct: 360 EVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 419
Query: 406 YLSEAALGDANDDAIKNGSFY 426
YL EAALGDAN DAI NGSF+
Sbjct: 420 YLKEAALGDANADAINNGSFF 440
>sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1
Length = 439
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/440 (75%), Positives = 375/440 (85%), Gaps = 16/440 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MA VST+GA N A PL +N S + VPS+ F GK+LKKV K VS ++ ++S ++ +
Sbjct: 1 MATSVSTIGAANKA-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E D +KQT DRW GL D SDDQQDI RGKGMVD+LFQAP +GTH+AV+ SY+Y+
Sbjct: 60 EEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYV 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
SQGLRQY++DNTLDG YIAP+FMDK+VVHITKNFL LPN+KVPLILG+WGGKGQGKSFQC
Sbjct: 120 SQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQC 179
Query: 177 ELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
ELVF KMGIN GNAGEPAKLIRQRYREAA+II+KG +CCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAG 239
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 299
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRMEKFYWAPTREDRIGVC GIFRTDNVP+E ++K+VDTFPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDD 359
Query: 346 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
EVRKW+S GIE IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLA+
Sbjct: 360 EVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAET 419
Query: 406 YLSEAALGDANDDAIKNGSF 425
YL EAALGDAN DAI G+F
Sbjct: 420 YLKEAALGDANADAINTGNF 439
>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1
Length = 441
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/441 (77%), Positives = 384/441 (87%), Gaps = 16/441 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA +STVGAVN L L +NGS + PSS F G SLKKV SS+V ++ S SFK+V+
Sbjct: 1 MAASLSTVGAVNRTL-LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E +E +QT DRW GLAYD+SDDQQDITRGKG+VD+LFQAPM++GTHYAV+SS+ Y+
Sbjct: 60 ADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GLRQY+ DN DG YIAPAF+DK+VVHI KNF+ LPN+KVPLILG+WGGKGQGKSFQC
Sbjct: 120 SAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQC 179
Query: 177 ELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225
ELVFAKMGIN GNAGEPAKLIRQRYREA+D+IKKGKMC LFINDLDAGAG
Sbjct: 180 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAG 239
Query: 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLI 299
Query: 286 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 345
RDGRMEKFYWAPTREDRIGVC GIFRTD VP++DIV+LVD PGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDD 359
Query: 346 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405
EVRKWIS VG++ +GK+LVNSKEGPPTF+QPKMTLDKLL Y MLVQEQENVKRVQLAD+
Sbjct: 360 EVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQ 419
Query: 406 YLSEAALGDANDDAIKNGSFY 426
YL+EAALG+AN+DAIK+GSF+
Sbjct: 420 YLNEAALGNANEDAIKSGSFF 440
>sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Solanum pennellii PE=2 SV=1
Length = 459
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/435 (75%), Positives = 374/435 (85%), Gaps = 15/435 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MAA VST+GA + A PL +N S + VPS+ F GKSLKKV +K VS ++ +++ +VV+
Sbjct: 1 MAASVSTIGAASKA-PLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ E +T +DRW GL + SDDQQDI RGKG+VD+LFQAP +GTH+A+M+SY+Y+SQ
Sbjct: 60 Q--EVDETKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
L+ Y LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 118 LKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELV 177
Query: 180 FAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228
F KMGIN GNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMG
Sbjct: 178 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMG 237
Query: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 288
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 297
Query: 289 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 348
RMEKFYWAPTREDRIGVC GIFRTDNVP+E +VK+VD+FPGQSIDFFGALRARVYDDEVR
Sbjct: 298 RMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVR 357
Query: 349 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 408
KW+S GIE IG++L+NS++GPPTFEQPKMTL+KLLEYG MLVQEQENVKRVQLA+ YL
Sbjct: 358 KWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLK 417
Query: 409 EAALGDANDDAIKNG 423
EAALGDAN DAI G
Sbjct: 418 EAALGDANADAINTG 432
>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1
Length = 425
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/412 (79%), Positives = 361/412 (87%), Gaps = 17/412 (4%)
Query: 31 SVFLGKSLKKVSSKVSQQRILSKSFKVVS---EYDEEKQTSQDRWAGLAYDISDDQQDIT 87
++FLGK +K ++ S+ +V++ E D+ KQT DRW GLAYDISDDQQDIT
Sbjct: 17 TIFLGKKVKNYYH--GGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDIT 74
Query: 88 RGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHIT 147
RGKG+VD+LFQAPM GTH A++SSY+YISQGLR+Y DNT+DGLYIAPAFMDK++VH+
Sbjct: 75 RGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLA 134
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLI 196
KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGIN GN GEPAKLI
Sbjct: 135 KNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLI 193
Query: 197 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 256
RQRYREAADII KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQL
Sbjct: 194 RQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQL 253
Query: 257 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 316
PGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTDNVP
Sbjct: 254 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 313
Query: 317 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 376
E +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+ E+G+E I KRLVNS+EGPPTF+QP
Sbjct: 314 DEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQP 373
Query: 377 KMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGK 428
KMT++KL+EYG MLVQEQENVKRVQLADKYLSEAALG ANDDA+K G+FYGK
Sbjct: 374 KMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425
>sp|Q01587|RCA_CUCSA Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Cucumis sativus PE=2 SV=1
Length = 413
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/413 (78%), Positives = 358/413 (86%), Gaps = 15/413 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VST+GAVN +N S+ LVP+S FLG LK VSS+ + ++++ +FK+V+E
Sbjct: 1 MAATVSTIGAVNRT---TLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAE 56
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DEEKQT +D+W GLA+D SDDQQDITRGKG+ D LFQAPM +GTH AV+SSY+YIS GL
Sbjct: 57 QDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGL 116
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R YS DN +DG YIAPAFMDK+ VHI KNFL LPN+KVPLILG+WGGKGQGKSFQCELVF
Sbjct: 117 RDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVF 176
Query: 181 AKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 229
AKMGIN GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR+GG
Sbjct: 177 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGG 236
Query: 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 237 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 296
Query: 290 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 349
M+KFYWAPTREDRIG+C+GIFRTD VP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 297 MDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 356
Query: 350 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 402
W VG+ERIG+ LVNSKE PPTF+QPKMT++KLLEYG MLV EQENVKRV+L
Sbjct: 357 WAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Zea mays GN=RCA1 PE=2 SV=3
Length = 433
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/414 (77%), Positives = 358/414 (86%), Gaps = 18/414 (4%)
Query: 31 SVFLGKSLKK--VSSKVSQQRILSKS---FKVVS--EYDEEKQTSQDRWAGLAYDISDDQ 83
S FLGK L K VS+ V+ S S FK ++ E DE KQT +DRW GLAYDISDDQ
Sbjct: 19 SSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQ 78
Query: 84 QDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV 143
QDITRGKG+VD LFQAPM GTH AV+SSYDYISQG + Y+ DN +DG YIA FMDK+V
Sbjct: 79 QDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLV 138
Query: 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEP 192
VH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGI +GNAGEP
Sbjct: 139 VHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEP 198
Query: 193 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 252
AKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT
Sbjct: 199 AKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 258
Query: 253 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRT 312
NVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRT
Sbjct: 259 NVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRT 318
Query: 313 DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPT 372
D V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+SE G+E I ++LVNSKEGPPT
Sbjct: 319 DGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPT 378
Query: 373 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 426
FEQPK+T++KLLEYG MLV EQENVKRVQLADKYL+EAALG+AN+DA+K GSF+
Sbjct: 379 FEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Chlamydomonas reinhardtii PE=2 SV=1
Length = 408
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/384 (63%), Positives = 297/384 (77%), Gaps = 21/384 (5%)
Query: 43 SKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME 102
++V+ + + +VV+ KQ + R D SDDQQDITRG+ MVD LFQ
Sbjct: 18 ARVATRSVRRAQLQVVAP--SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFG 75
Query: 103 SG-THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI 161
+G TH AV+SS +Y+SQ + S +N DG YI+PAF+DK+ +HI KNF++LP +KVPLI
Sbjct: 76 AGGTHNAVLSSQEYLSQS--RASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLI 133
Query: 162 LGIWGGKGQGKSFQCELVFAKMGI-----------NGNAGEPAKLIRQRYREAADIIKKG 210
LGIWGGKGQGK+FQC L + K+GI +GNAGEPAKLIR RYREA+DIIKKG
Sbjct: 134 LGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKG 193
Query: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270
+MC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PRVPI
Sbjct: 194 RMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPI 253
Query: 271 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 330
+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + ++ LVDTFPGQ
Sbjct: 254 VCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQ 313
Query: 331 SIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLD--KLLEYGR 388
SIDFFGALRARVYDD VR+WI++ G+++IG++LVN+++ PK+++D L++YG+
Sbjct: 314 SIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ---KVAMPKVSMDLNVLIKYGK 370
Query: 389 MLVQEQENVKRVQLADKYLSEAAL 412
LV EQENVKRVQLAD YLS A L
Sbjct: 371 SLVDEQENVKRVQLADAYLSGAEL 394
>sp|Q06721|RCA_ANASC Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena
sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1
Length = 415
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/332 (55%), Positives = 233/332 (70%), Gaps = 27/332 (8%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQCEL F KMG+
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
+++G+ GIF D + + D+ KLVD+FP QSIDFF ALR+R+YD+++R +I +VG E +
Sbjct: 184 EKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 420
R+VNS EGPP F++P TL L+E +V EQ+ ++ QL D+Y + +
Sbjct: 244 LRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY-----------NRL 292
Query: 421 KNGSFYGKAAQQVKV----PVPEGCTDPAAAN 448
G Y A+ ++ P P G P +A+
Sbjct: 293 NRGRSYQPASPVAEIATSQPSPNGVNQPQSAS 324
>sp|P58555|RCA_NOSS1 Ribulose bisphosphate carboxylase/oxygenase activase OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rca PE=3 SV=1
Length = 414
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 218/286 (76%), Gaps = 12/286 (4%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------- 185
YIAP F+DK+ VHITKNFLN+P V+VPLILGI G KG+GK+FQCEL F KMGI
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 186 ----NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240
+ +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 241 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 301 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360
D++G+ GIF D + + +I +LVDTFP QSIDFF ALR+R+YD ++R +I +VG ERI
Sbjct: 184 DKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERIS 243
Query: 361 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 406
R+VNS E PP F++P +L L+E G +++ EQ+ V QL D+Y
Sbjct: 244 LRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>sp|P85086|RCA_ARAHY Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1
Length = 140
Score = 172 bits (437), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 124/277 (44%), Positives = 127/277 (45%), Gaps = 148/277 (53%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
GLAYDISDDQQDITRG MVD+LFQAPM GTHYAVMSSY+YISQGLR
Sbjct: 1 GLAYDISDDQQDITRG--MVDSLFQAPMNDGTHYAVMSSYEYISQGLR------------ 46
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------- 186
VPLILGIWGG KMGIN
Sbjct: 47 ------------------------VPLILGIWGG--------------KMGINPIMMSAG 68
Query: 187 ----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 242
GNAGEPA KMCCLFINDLDAGAG
Sbjct: 69 ELESGNAGEPA-----------------KMCCLFINDLDAGAG----------------- 94
Query: 243 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 302
RVPIIVTGNDFSTLYAPLI R
Sbjct: 95 ------------------------RVPIIVTGNDFSTLYAPLI----------------R 114
Query: 303 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 339
IGVC+GIFR LVDTFPGQSIDFFGALR
Sbjct: 115 IGVCTGIFR-----------LVDTFPGQSIDFFGALR 140
>sp|P84562|RCA_POPEU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Populus euphratica PE=1 SV=1
Length = 32
Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 31/60 (51%), Gaps = 28/60 (46%)
Query: 323 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDK 382
LVDTFPGQSIDFFGALR EGPPTFEQP MT++K
Sbjct: 1 LVDTFPGQSIDFFGALR----------------------------EGPPTFEQPAMTIEK 32
>sp|P85111|RCA_VITSX Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Vitis sp. PE=1 SV=1
Length = 62
Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 31/61 (50%), Gaps = 28/61 (45%)
Query: 182 KMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 230
+MGIN GNAGEPAK MCCLFINDLDAGAGR+G
Sbjct: 15 RMGINPIMMSAGELESGNAGEPAK-----------------MCCLFINDLDAGAGRIGVC 57
Query: 231 T 231
T
Sbjct: 58 T 58
Score = 35.4 bits (80), Expect = 0.89, Method: Composition-based stats.
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 74 GLAYDISDDQQDITR 88
GLAYDISDDQQDITR
Sbjct: 1 GLAYDISDDQQDITR 15
>sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A OS=Arabidopsis
thaliana GN=RPT4A PE=2 SV=1
Length = 399
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P +R D + + +GI + + E
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 319 DIVKLVDTFPGQSI 332
IVKL + F G +
Sbjct: 336 AIVKLAEGFNGADL 349
>sp|P62335|PRS10_SPETR 26S protease regulatory subunit 10B OS=Spermophilus
tridecemlineatus GN=PSMC6 PE=2 SV=1
Length = 389
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>sp|P62334|PRS10_MOUSE 26S protease regulatory subunit 10B OS=Mus musculus GN=Psmc6 PE=1
SV=1
Length = 389
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1
SV=1
Length = 389
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>sp|Q2KIW6|PRS10_BOVIN 26S protease regulatory subunit 10B OS=Bos taurus GN=PSMC6 PE=2
SV=1
Length = 389
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 327 FPGQSI 332
F G +
Sbjct: 338 FNGADL 343
>sp|Q9MAK9|PS10B_ARATH 26S protease regulatory subunit S10B homolog B OS=Arabidopsis
thaliana GN=RPT4B PE=2 SV=1
Length = 399
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + I+ GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 318
+V +I+ N L L+R GR+++ P + R+ + SGI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYE 335
Query: 319 DIVKLVDTFPGQSI 332
IVKL + F G +
Sbjct: 336 AIVKLGEGFNGADL 349
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAK-----MGINGN------AGEPAKLIRQRYREA 203
N+K P + ++G G GK+ + V + + + G GE K +R+ +R+A
Sbjct: 485 NIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 544
Query: 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
+ C +F +++D+ A R GG V ++V+ L +L G+ E
Sbjct: 545 RQVAP----CVIFFDEIDSLAPRRGGIGDSHVTERVVSQLL---------TELDGL---E 588
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFR----TDNVPK 317
E V +I N + L+R GR+E+ + P ++ R+ + R D+V
Sbjct: 589 ELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNI 648
Query: 318 EDIVKLVDTFPGQSID 333
E++ + + + G I+
Sbjct: 649 EELAEKTEGYSGADIE 664
>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPT4 PE=1 SV=4
Length = 437
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + V A +G N GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 318
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 319 DIVKLVDTFPGQSI 332
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAA 204
V+ P + ++G G GK+ + V + G N + GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
++ C +F +++DA A + G V +++VN L +L GM E
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----E 585
Query: 265 NPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDR 302
P+ +++ + + P L+R GR+++ P +++
Sbjct: 586 EPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEK 624
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 25/153 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ V A +G+N GE A++IR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYA- 221
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 222 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 270
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
+ II+ N TL L+R GR+++ P
Sbjct: 271 --QTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 40/218 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ V +++ N GE A++IR+ + A D +
Sbjct: 189 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 244
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 245 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 294
Query: 273 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 326
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 295 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 354
Query: 327 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 355
F + F A R V D++ K + +VG
Sbjct: 355 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 392
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 29/163 (17%)
Query: 164 IWGGKGQGKSFQCELVFAK-----MGINGNA------GEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + M + G+ GE A+L+R+ + D+ KK
Sbjct: 217 LYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 272
Query: 213 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
+FI+++DA GA R T T ++ V TLM + L GM E V II
Sbjct: 273 TIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL--------LAGMDGFETRGDVKII 321
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFRT 312
N L L+R GR ++ P E R+ + RT
Sbjct: 322 GATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRT 364
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
V+ P + ++G G GK+ Q F K+ + G+ AKL+R ++ A
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 260
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 261 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 317
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 318 EDIVKLVDTFPGQSI 332
E++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>sp|Q54PJ1|PRS10_DICDI 26S protease regulatory subunit 10B OS=Dictyostelium discoideum
GN=psmC6 PE=1 SV=1
Length = 393
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 31/189 (16%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAA 204
+K P + ++G G GK+ + + + N GE A++IR+ + A
Sbjct: 168 IKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DT 273
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGV-CSGIFRTDNVPKE 318
+V II+ N L L+R GR+++ P R D + + + I + +V E
Sbjct: 274 LSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYE 333
Query: 319 DIVKLVDTF 327
I KL D F
Sbjct: 334 AIAKLADGF 342
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
V+ P + ++G G GK+ Q F K+ + G+ AKL+R ++ A
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 260
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 261 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 317
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 318 EDIVKLVDTFPGQSI 332
E++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>sp|Q54CS8|PEX6_DICDI Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6
PE=3 SV=1
Length = 1201
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 32/181 (17%)
Query: 164 IWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ +C L F + IN GE K IR+ + +A ++ K
Sbjct: 957 LFGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEKNIREIFNKA----RQAKP 1012
Query: 213 CCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
C +F ++LD+ A R G V +++V+ L +L GM +++ V II
Sbjct: 1013 CVIFFDELDSLAPSRGNGADSGGVMDRVVSQLL---------AELDGM---QKSSDVFII 1060
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYW---APTREDRIGVCSGIFRTDNVPKE-DIVKLVDTF 327
N L + L+R GR+++ + + +E++ + + R N+ + D+ K+V+
Sbjct: 1061 GATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENC 1120
Query: 328 P 328
P
Sbjct: 1121 P 1121
>sp|Q6B952|YCF46_GRATL Uncharacterized AAA domain-containing protein ycf46 OS=Gracilaria
tenuistipitata var. liui GN=ycf46 PE=3 SV=1
Length = 491
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 93/226 (41%), Gaps = 31/226 (13%)
Query: 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF-------Q 175
YS DN + GL + +++K +K N + VP + + G +G GKS Q
Sbjct: 226 YSFDN-VGGLNVLKDWLNKRSKAFSKQAKNY-GLTVPKGILLIGIQGTGKSLIAKAISGQ 283
Query: 176 CELVFAKMGINGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTV 235
L K+ + +R R ++ C L+I+++D R+ T
Sbjct: 284 WNLPLLKLDMGKIFASLVGQSEERMRHMIKTAEQSSPCILWIDEIDKCFTRLNNYTDSGT 343
Query: 236 NNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 295
N ++++ L ++ E+ V +I T N +L + L+R GR ++ ++
Sbjct: 344 NGRVLSTMLTWLS--------------EKKKPVFVIATANQVLSLPSELLRKGRFDEIFF 389
Query: 296 --APTREDR---IGVCSGIFRTDNVPKEDI---VKLVDTFPGQSID 333
P+ E+R + FR + K DI KL D F G I+
Sbjct: 390 LNLPSLEEREKIFQIHLMKFRPLSWRKYDIKYLSKLTDQFSGAEIE 435
>sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tbp1 PE=3 SV=1
Length = 438
Score = 39.3 bits (90), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 33/192 (17%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
VK P ++G G GK+ Q F K+ + G+ AKL+R +A
Sbjct: 216 VKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVR----DAF 271
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
+ K+ +FI++LDA G R ++ V T++ + + QL G + +
Sbjct: 272 ALAKEKSPAIIFIDELDAIGTKRFDSEK---AGDREVQRTMLELLN-----QLDGFSSDD 323
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRT----DNVPK 317
RV +I N TL L+R GR+++ + P E R+G+ R D++
Sbjct: 324 ---RVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINW 380
Query: 318 EDIVKLVDTFPG 329
E++ + D + G
Sbjct: 381 EELARSTDEYNG 392
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis thaliana
GN=CDC48B PE=2 SV=1
Length = 603
Score = 39.3 bits (90), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCE---LVFAKMGIN-GNAGEPAKLIRQRYREAA 204
+K P L ++G G GK+ +C+ +V + ++ +AGE K++R+ + EA+
Sbjct: 53 LKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEAS 112
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
K +FI+++D R + V TLM+ ++ P++
Sbjct: 113 SHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKPSS----------S 161
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 305
PRV ++ + N + L R GR + P EDR+ +
Sbjct: 162 APRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKI 204
>sp|P54776|PRS6A_SOLLC 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum
GN=TBP1 PE=2 SV=1
Length = 423
Score = 38.9 bits (89), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
V+ P + ++G G GK+ Q F K+ + G+ AKL+R ++ A
Sbjct: 201 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 259
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K+ C +FI+++DA G R Q L+N QL G + +
Sbjct: 260 ---KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDD 308
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 317
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 309 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNF 365
Query: 318 EDIVKLVDTFPGQSI 332
E++ + D F G +
Sbjct: 366 EELARSTDDFNGAQL 380
>sp|B8GGN4|PAN_METPE Proteasome-activating nucleotidase OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3
SV=1
Length = 412
Score = 38.9 bits (89), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 22/143 (15%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIA 248
GE A+L+R+ + ++ KK +FI+++DA GA R T T ++ V+ TLM +
Sbjct: 229 GEGARLVRELF----ELAKKKSPSIIFIDEIDAIGASR---TESNTSGDREVHRTLMQLL 281
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV- 305
++ G N+ + V II N L L+R GR ++ AP E R+ +
Sbjct: 282 -----AEMDGFSNRGD---VRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSIL 333
Query: 306 ---CSGIFRTDNVPKEDIVKLVD 325
C+G+ V DI D
Sbjct: 334 NIHCAGMNIDKKVDIRDIATRTD 356
>sp|P46465|PRS6A_ORYSJ 26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp.
japonica GN=TBP1 PE=2 SV=2
Length = 429
Score = 38.9 bits (89), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 156 VKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREAA 204
++ P + ++G G GK+ Q F K+ + G+ AKL+R ++ A
Sbjct: 207 IRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 265
Query: 205 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 266 ---KEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 314
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 317
R+ +I N L L+R GR+++ + P+ E R + R NV
Sbjct: 315 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNF 371
Query: 318 EDIVKLVDTFPGQSI 332
E++ + D F G +
Sbjct: 372 EELARSTDDFNGAQL 386
>sp|P46502|PRS6B_CAEEL Probable 26S protease regulatory subunit 6B OS=Caenorhabditis
elegans GN=rpt-3 PE=3 SV=1
Length = 414
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIA 248
GE +++R +R A K+ +FI+++DA A R T Q + L+N
Sbjct: 237 GEGPRMVRDVFRLA----KENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQM 292
Query: 249 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK---FYWAPTREDRI-- 303
D ++Q N V +I+ N TL L+R GR+++ F R+ R+
Sbjct: 293 DG---------FDQSTN--VKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 341
Query: 304 -GVCSGIFRTDNVPKEDIVKLVDTFPGQSID 333
VCS + +D+V ED V D G I+
Sbjct: 342 STVCSRMNLSDDVDLEDWVARPDKISGADIN 372
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 27/146 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMG-----------INGNAGEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + + GE A+L+R+ + D+ K+
Sbjct: 192 LYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELF----DLAKEKAP 247
Query: 213 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271
+FI+++DA GA R T T ++ V TLM + L M E V II
Sbjct: 248 SIVFIDEIDAIGASR---TEAMTSGDREVQRTLMQL--------LAAMDGFEPRGDVKII 296
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWAP 297
N L A L+R GR ++ P
Sbjct: 297 GATNRIDILDAALLRPGRFDRIIEIP 322
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 29/174 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAADIIKKGKM 212
++G G GK+ + V + G N A GE K IR+ +R+A ++
Sbjct: 526 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 581
Query: 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLPGMYNQEENPRVPII 271
+F +++D+ A G +T V ++VN L + P N +V II
Sbjct: 582 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLN-------------KVVII 628
Query: 272 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 325
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 629 AATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 682
>sp|B0TII6|RECA_HELMI Protein RecA OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=recA PE=3 SV=1
Length = 346
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 182 KMGINGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYT 234
+MG + + G A+L+ Q R+ ++ K K CCLFIN + G M G + T
Sbjct: 160 EMG-DAHVGLQARLMSQALRKLTGVVSKSKTCCLFINQIREKVGVMFGNPETT 211
>sp|Q8SR13|PRS6A_ENCCU 26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPT5 PE=1 SV=1
Length = 401
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 25/154 (16%)
Query: 155 NVKVPLILGIWGGKGQGKSF-------QCELVFAKMG----INGNAGEPAKLIRQRYREA 203
N+K P + ++G G GK+ + F K+ + G+ A+L+R +A
Sbjct: 178 NIKPPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVR----DA 233
Query: 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263
+ K+ K +FI+++DA + + Q ++ V T++ + + QL G + E
Sbjct: 234 FALAKERKPTIIFIDEIDAIGAKRSDSDQ--TGDREVQRTMLELLN-----QLDGFSSSE 286
Query: 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297
E V II N L L+R GR+++ P
Sbjct: 287 E---VKIIAATNRVDILDPALLRSGRLDRKIEFP 317
>sp|Q9ER39|TOR1A_MOUSE Torsin-1A OS=Mus musculus GN=Tor1a PE=1 SV=1
Length = 333
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 116 ISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQ 175
+S+ Q LDN L G ++A KV+++ FL+ P K PL L + G G GK+F
Sbjct: 57 LSREALQKDLDNKLFGQHLA----KKVILNAVSGFLSNPKPKKPLTLSLHGWTGTGKNFA 112
Query: 176 CELV 179
+++
Sbjct: 113 SKII 116
>sp|Q9HPF0|CDCH_HALSA Protein CdcH OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=cdcH PE=3 SV=1
Length = 742
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA-----------GEPAKLIRQRYREAA 204
V+ P + ++G G GK+ + V + N + GE K IRQ +R+A
Sbjct: 493 VEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKAR 552
Query: 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264
+ +F ++LD+ A G T V+ ++VN L +L G+ EE
Sbjct: 553 QVAP----TVIFFDELDSLAPGRGQTGGNNVSERVVNQLL---------TELDGLEEMEE 599
Query: 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF 293
V +I N + LIR GR ++
Sbjct: 600 ---VMVIAATNRPDIIDPALIRSGRFDRL 625
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,088,352
Number of Sequences: 539616
Number of extensions: 7774794
Number of successful extensions: 19762
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 19659
Number of HSP's gapped (non-prelim): 127
length of query: 464
length of database: 191,569,459
effective HSP length: 121
effective length of query: 343
effective length of database: 126,275,923
effective search space: 43312641589
effective search space used: 43312641589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)