Query 012418
Match_columns 464
No_of_seqs 403 out of 2434
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:26:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00020 ribulose bisphosphate 100.0 3.8E-95 8E-100 739.2 32.0 399 9-412 2-413 (413)
2 KOG0651 26S proteasome regulat 100.0 1.6E-62 3.5E-67 486.3 9.2 365 1-408 1-387 (388)
3 COG1222 RPT1 ATP-dependent 26S 100.0 7.9E-44 1.7E-48 359.2 20.5 167 154-334 180-363 (406)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 2.1E-42 4.6E-47 365.3 18.7 227 153-407 539-789 (802)
5 KOG0736 Peroxisome assembly fa 100.0 3.2E-41 6.9E-46 363.3 19.2 259 124-406 670-951 (953)
6 KOG0730 AAA+-type ATPase [Post 100.0 5.2E-40 1.1E-44 350.8 19.3 164 153-333 462-642 (693)
7 KOG0734 AAA+-type ATPase conta 100.0 8.2E-41 1.8E-45 349.1 11.4 249 117-392 295-571 (752)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 3.7E-38 8.1E-43 333.3 16.4 212 123-352 187-417 (802)
9 KOG0735 AAA+-type ATPase [Post 100.0 9.2E-37 2E-41 326.6 17.5 186 155-360 697-899 (952)
10 KOG0731 AAA+-type ATPase conta 100.0 2.9E-36 6.2E-41 329.5 16.0 252 123-392 308-583 (774)
11 COG0465 HflB ATP-dependent Zn 100.0 2.5E-35 5.4E-40 317.0 16.2 252 123-393 147-421 (596)
12 KOG0738 AAA+-type ATPase [Post 100.0 1.3E-34 2.8E-39 294.4 17.0 188 154-359 239-445 (491)
13 KOG0727 26S proteasome regulat 100.0 2.6E-34 5.7E-39 279.5 14.6 168 152-333 182-366 (408)
14 KOG0652 26S proteasome regulat 100.0 1.2E-33 2.7E-38 275.8 13.4 167 153-333 199-382 (424)
15 COG0464 SpoVK ATPases of the A 100.0 8.5E-33 1.8E-37 294.5 19.3 164 155-335 272-454 (494)
16 KOG0726 26S proteasome regulat 100.0 6E-33 1.3E-37 274.2 16.0 168 153-334 213-397 (440)
17 TIGR03689 pup_AAA proteasome A 100.0 3.8E-32 8.2E-37 290.2 21.5 275 122-412 178-500 (512)
18 TIGR01243 CDC48 AAA family ATP 100.0 5.6E-32 1.2E-36 301.3 23.1 229 153-406 481-729 (733)
19 CHL00195 ycf46 Ycf46; Provisio 100.0 1.2E-31 2.5E-36 286.0 22.2 163 154-334 254-435 (489)
20 KOG0729 26S proteasome regulat 100.0 1.4E-32 3.1E-37 269.0 13.6 166 154-333 206-388 (435)
21 KOG0728 26S proteasome regulat 100.0 1.8E-31 4E-36 259.4 15.7 167 153-333 175-358 (404)
22 PTZ00454 26S protease regulato 100.0 5.3E-31 1.2E-35 274.9 17.4 198 123-334 142-357 (398)
23 KOG0741 AAA+-type ATPase [Post 100.0 1.8E-31 3.8E-36 279.2 13.3 193 122-333 215-445 (744)
24 TIGR01241 FtsH_fam ATP-depende 100.0 7.2E-31 1.6E-35 280.5 16.9 197 121-335 50-267 (495)
25 KOG0739 AAA+-type ATPase [Post 100.0 6E-31 1.3E-35 260.6 14.7 228 155-407 161-436 (439)
26 PRK03992 proteasome-activating 100.0 2.1E-30 4.5E-35 269.6 17.8 170 152-335 158-344 (389)
27 CHL00206 ycf2 Ycf2; Provisiona 100.0 9.8E-31 2.1E-35 302.9 16.7 163 153-335 1624-1849(2281)
28 KOG0737 AAA+-type ATPase [Post 100.0 3.1E-30 6.7E-35 261.7 16.0 253 118-390 84-359 (386)
29 COG1223 Predicted ATPase (AAA+ 100.0 2.9E-30 6.3E-35 252.1 15.2 191 119-333 114-324 (368)
30 CHL00176 ftsH cell division pr 100.0 3.1E-30 6.7E-35 282.6 17.3 169 153-335 210-395 (638)
31 PTZ00361 26 proteosome regulat 100.0 3.7E-29 8E-34 263.5 16.1 168 153-334 211-395 (438)
32 PRK10733 hflB ATP-dependent me 100.0 2.1E-28 4.6E-33 269.2 17.6 167 153-335 179-364 (644)
33 TIGR01242 26Sp45 26S proteasom 100.0 2.6E-28 5.6E-33 251.1 17.1 168 153-334 150-334 (364)
34 KOG0730 AAA+-type ATPase [Post 99.9 6.3E-27 1.4E-31 250.8 17.0 229 153-409 212-463 (693)
35 KOG0740 AAA+-type ATPase [Post 99.9 5.6E-27 1.2E-31 244.1 11.7 196 121-334 148-362 (428)
36 KOG0732 AAA+-type ATPase conta 99.9 5.6E-26 1.2E-30 254.7 16.6 166 154-336 294-482 (1080)
37 TIGR01243 CDC48 AAA family ATP 99.9 1.5E-24 3.2E-29 241.9 18.6 198 121-335 173-388 (733)
38 KOG0743 AAA+-type ATPase [Post 99.9 4.5E-22 9.7E-27 207.0 16.0 197 124-333 199-410 (457)
39 PF00004 AAA: ATPase family as 99.9 1.1E-21 2.4E-26 169.9 12.0 119 162-297 1-131 (132)
40 KOG0744 AAA+-type ATPase [Post 99.8 5.1E-20 1.1E-24 184.8 12.5 194 103-310 119-340 (423)
41 COG0466 Lon ATP-dependent Lon 99.8 7.3E-20 1.6E-24 198.4 12.2 137 160-313 351-511 (782)
42 KOG2004 Mitochondrial ATP-depe 99.8 1.5E-18 3.3E-23 187.6 15.4 183 153-363 432-638 (906)
43 KOG0742 AAA+-type ATPase [Post 99.8 3E-18 6.5E-23 176.3 13.4 157 158-334 383-583 (630)
44 TIGR00763 lon ATP-dependent pr 99.7 4.7E-17 1E-21 183.0 11.7 134 160-310 348-505 (775)
45 TIGR02881 spore_V_K stage V sp 99.6 1.1E-15 2.5E-20 150.6 13.2 128 160-314 43-195 (261)
46 CHL00181 cbbX CbbX; Provisiona 99.6 5.7E-15 1.2E-19 148.4 16.6 135 154-314 51-213 (287)
47 TIGR02880 cbbX_cfxQ probable R 99.6 7.2E-15 1.6E-19 147.4 15.7 162 127-314 23-212 (284)
48 KOG0735 AAA+-type ATPase [Post 99.6 1.6E-14 3.5E-19 156.6 17.5 168 158-335 430-616 (952)
49 COG0464 SpoVK ATPases of the A 99.6 7.8E-14 1.7E-18 149.2 18.5 164 153-335 12-192 (494)
50 PRK10787 DNA-binding ATP-depen 99.6 1.8E-14 3.9E-19 162.1 14.0 135 160-311 350-507 (784)
51 PRK00080 ruvB Holliday junctio 99.5 5.7E-14 1.2E-18 142.9 14.6 156 157-333 49-221 (328)
52 TIGR02639 ClpA ATP-dependent C 99.5 3.4E-14 7.3E-19 159.1 13.8 154 158-337 202-400 (731)
53 KOG0736 Peroxisome assembly fa 99.5 3.1E-13 6.7E-18 147.9 18.3 164 155-335 427-605 (953)
54 PF05496 RuvB_N: Holliday junc 99.5 2.8E-13 6.1E-18 131.6 14.5 152 158-331 49-218 (233)
55 TIGR00635 ruvB Holliday juncti 99.5 2E-13 4.4E-18 136.4 13.8 153 157-330 28-197 (305)
56 PRK07940 DNA polymerase III su 99.5 1.1E-12 2.3E-17 137.5 16.0 149 155-335 32-214 (394)
57 TIGR03345 VI_ClpV1 type VI sec 99.5 5.5E-13 1.2E-17 151.5 14.2 150 160-336 209-404 (852)
58 PRK07003 DNA polymerase III su 99.4 1.4E-12 3.1E-17 144.5 16.0 172 124-334 14-220 (830)
59 PRK11034 clpA ATP-dependent Cl 99.4 1.2E-12 2.6E-17 146.9 15.4 152 159-336 207-403 (758)
60 PRK10865 protein disaggregatio 99.4 1.2E-12 2.7E-17 148.9 12.8 127 159-310 199-354 (857)
61 PRK14956 DNA polymerase III su 99.4 3.3E-12 7.1E-17 136.3 14.4 170 124-332 16-220 (484)
62 PRK04195 replication factor C 99.4 5.6E-12 1.2E-16 135.0 16.1 144 157-327 37-192 (482)
63 PRK12323 DNA polymerase III su 99.4 3.7E-12 8.1E-17 139.5 14.1 173 124-335 14-226 (700)
64 CHL00095 clpC Clp protease ATP 99.4 5.7E-12 1.2E-16 143.0 16.0 159 156-340 197-399 (821)
65 PRK14949 DNA polymerase III su 99.4 1.2E-11 2.7E-16 139.2 18.2 173 123-335 13-221 (944)
66 PRK14962 DNA polymerase III su 99.4 2E-11 4.4E-16 130.7 18.9 162 124-325 12-206 (472)
67 PRK06893 DNA replication initi 99.4 2.5E-12 5.4E-17 124.9 10.8 142 160-329 40-195 (229)
68 TIGR03346 chaperone_ClpB ATP-d 99.4 5.3E-12 1.2E-16 143.7 14.4 156 158-339 193-393 (852)
69 PRK05342 clpX ATP-dependent pr 99.3 1.3E-11 2.8E-16 130.0 15.5 91 159-249 108-212 (412)
70 PHA02544 44 clamp loader, smal 99.3 1.1E-11 2.3E-16 124.7 14.2 132 146-307 32-170 (316)
71 PRK14960 DNA polymerase III su 99.3 1.3E-11 2.8E-16 135.6 15.3 165 124-327 13-212 (702)
72 PRK08691 DNA polymerase III su 99.3 1.3E-11 2.9E-16 136.2 15.4 166 124-328 14-214 (709)
73 PRK14961 DNA polymerase III su 99.3 3.2E-11 7E-16 124.8 17.0 170 124-333 14-219 (363)
74 COG2256 MGS1 ATPase related to 99.3 2.3E-11 5.1E-16 125.9 14.9 118 160-308 49-174 (436)
75 PRK13342 recombination factor 99.3 1.8E-11 3.8E-16 128.8 14.4 121 160-311 37-165 (413)
76 TIGR00362 DnaA chromosomal rep 99.3 2.6E-11 5.6E-16 126.9 15.1 177 121-330 105-303 (405)
77 TIGR00390 hslU ATP-dependent p 99.3 1E-11 2.2E-16 130.4 11.8 90 211-306 247-342 (441)
78 PRK07764 DNA polymerase III su 99.3 5.4E-11 1.2E-15 134.6 17.7 154 124-316 13-198 (824)
79 PRK12422 chromosomal replicati 99.3 5.9E-11 1.3E-15 126.3 16.0 187 121-339 106-315 (445)
80 PRK00149 dnaA chromosomal repl 99.3 4.2E-11 9.2E-16 127.1 14.6 186 121-339 117-324 (450)
81 PLN03025 replication factor C 99.3 2.4E-11 5.1E-16 123.4 12.1 154 143-328 21-191 (319)
82 PRK06645 DNA polymerase III su 99.3 1.1E-10 2.4E-15 125.9 17.7 170 124-333 19-228 (507)
83 PRK05201 hslU ATP-dependent pr 99.3 2E-11 4.2E-16 128.4 11.5 90 211-306 249-344 (443)
84 TIGR00382 clpX endopeptidase C 99.3 2.8E-11 6.1E-16 127.4 12.5 115 159-276 116-247 (413)
85 PRK07994 DNA polymerase III su 99.3 7.7E-11 1.7E-15 130.0 16.3 172 124-335 14-221 (647)
86 PRK14958 DNA polymerase III su 99.3 4.9E-11 1.1E-15 128.8 14.1 170 124-332 14-218 (509)
87 PRK14086 dnaA chromosomal repl 99.3 5.9E-11 1.3E-15 129.8 14.5 178 121-329 283-480 (617)
88 TIGR02928 orc1/cdc6 family rep 99.2 1E-09 2.2E-14 112.3 22.4 133 157-311 38-213 (365)
89 PRK05563 DNA polymerase III su 99.2 1.4E-10 3.1E-15 126.5 16.7 154 124-316 14-197 (559)
90 PRK14964 DNA polymerase III su 99.2 1E-10 2.2E-15 125.6 15.2 163 124-326 11-209 (491)
91 COG2255 RuvB Holliday junction 99.2 1.7E-10 3.6E-15 115.3 15.0 152 157-333 50-222 (332)
92 PRK08084 DNA replication initi 99.2 7.6E-11 1.7E-15 115.0 12.5 170 122-329 18-201 (235)
93 PRK14088 dnaA chromosomal repl 99.2 1.3E-10 2.9E-15 123.4 14.8 178 121-330 100-298 (440)
94 PF07728 AAA_5: AAA domain (dy 99.2 2.2E-11 4.8E-16 108.0 7.5 115 161-290 1-139 (139)
95 PRK14959 DNA polymerase III su 99.2 1.4E-10 3.1E-15 127.2 15.3 170 124-333 14-219 (624)
96 PRK14970 DNA polymerase III su 99.2 1.6E-10 3.5E-15 119.1 14.8 162 124-325 15-197 (367)
97 PRK14957 DNA polymerase III su 99.2 2.4E-10 5.1E-15 124.3 16.8 153 124-316 14-197 (546)
98 PRK14969 DNA polymerase III su 99.2 1.2E-10 2.6E-15 126.4 14.4 170 124-333 14-219 (527)
99 PRK14951 DNA polymerase III su 99.2 2.2E-10 4.9E-15 126.0 16.5 153 124-316 14-202 (618)
100 TIGR02640 gas_vesic_GvpN gas v 99.2 2.3E-10 4.9E-15 113.5 15.0 135 159-310 21-198 (262)
101 TIGR02397 dnaX_nterm DNA polym 99.2 2.7E-10 5.8E-15 115.9 15.8 141 157-326 34-210 (355)
102 PRK14965 DNA polymerase III su 99.2 2E-10 4.3E-15 125.9 14.9 154 124-316 14-197 (576)
103 PRK12402 replication factor C 99.2 1.1E-10 2.4E-15 117.6 11.9 139 161-327 38-216 (337)
104 KOG0989 Replication factor C, 99.2 7.4E-11 1.6E-15 118.7 10.2 159 141-332 42-224 (346)
105 PRK08727 hypothetical protein; 99.2 8.2E-11 1.8E-15 114.7 10.3 139 160-329 42-196 (233)
106 TIGR02639 ClpA ATP-dependent C 99.2 4.4E-10 9.6E-15 126.2 17.4 132 158-310 482-662 (731)
107 PRK14963 DNA polymerase III su 99.2 4.2E-10 9.1E-15 121.5 16.4 167 124-330 12-213 (504)
108 PRK14952 DNA polymerase III su 99.2 7.9E-10 1.7E-14 121.1 17.5 154 124-316 11-196 (584)
109 PRK00411 cdc6 cell division co 99.2 5.2E-10 1.1E-14 115.7 15.2 150 158-329 54-246 (394)
110 PRK06305 DNA polymerase III su 99.2 6.7E-10 1.5E-14 118.4 16.3 152 124-315 15-198 (451)
111 PRK05642 DNA replication initi 99.2 1.5E-10 3.3E-15 112.9 10.5 172 122-329 15-200 (234)
112 PTZ00112 origin recognition co 99.1 1.1E-09 2.3E-14 123.0 17.7 153 155-330 777-974 (1164)
113 PRK14953 DNA polymerase III su 99.1 7.6E-10 1.6E-14 119.1 16.0 154 124-317 14-198 (486)
114 PRK07133 DNA polymerase III su 99.1 5.6E-10 1.2E-14 124.3 15.4 166 124-329 16-214 (725)
115 PRK09111 DNA polymerase III su 99.1 9.5E-10 2.1E-14 120.9 17.0 167 124-330 22-229 (598)
116 KOG1969 DNA replication checkp 99.1 3.8E-10 8.2E-15 123.6 13.4 155 159-329 326-502 (877)
117 PRK06620 hypothetical protein; 99.1 5E-10 1.1E-14 108.2 12.7 162 121-329 11-181 (214)
118 cd00009 AAA The AAA+ (ATPases 99.1 6.2E-10 1.3E-14 95.6 12.0 118 158-297 18-150 (151)
119 PRK11034 clpA ATP-dependent Cl 99.1 5.7E-10 1.2E-14 125.5 14.9 133 158-310 486-666 (758)
120 TIGR03420 DnaA_homol_Hda DnaA 99.1 1E-09 2.2E-14 104.7 14.4 172 122-330 11-194 (226)
121 PRK13341 recombination factor 99.1 4.6E-10 9.9E-15 125.7 13.4 138 161-329 54-209 (725)
122 PRK14948 DNA polymerase III su 99.1 1.4E-09 3.1E-14 120.0 16.9 166 124-328 14-216 (620)
123 PRK14950 DNA polymerase III su 99.1 1.6E-09 3.5E-14 118.9 17.2 164 123-326 13-213 (585)
124 PRK05896 DNA polymerase III su 99.1 4.4E-10 9.5E-15 122.9 12.6 173 124-336 14-222 (605)
125 TIGR00678 holB DNA polymerase 99.1 6.6E-10 1.4E-14 104.0 12.1 124 157-309 12-167 (188)
126 PF00308 Bac_DnaA: Bacterial d 99.1 1.4E-10 3E-15 112.3 7.3 176 121-328 3-199 (219)
127 PRK00440 rfc replication facto 99.1 1.5E-09 3.2E-14 108.4 14.8 150 143-324 25-190 (319)
128 PRK14087 dnaA chromosomal repl 99.1 6.6E-10 1.4E-14 118.5 12.8 187 120-338 109-320 (450)
129 PRK14955 DNA polymerase III su 99.1 7.4E-10 1.6E-14 116.1 12.9 164 123-326 13-220 (397)
130 PRK08903 DnaA regulatory inact 99.1 7E-10 1.5E-14 106.7 11.7 167 121-330 13-192 (227)
131 smart00382 AAA ATPases associa 99.1 4.6E-10 9.9E-15 95.1 9.2 115 159-296 2-144 (148)
132 PRK08116 hypothetical protein; 99.1 4.3E-10 9.3E-15 112.2 9.8 133 116-277 75-221 (268)
133 TIGR01650 PD_CobS cobaltochela 99.1 4.2E-10 9.2E-15 115.1 9.7 133 158-310 63-233 (327)
134 PRK06647 DNA polymerase III su 99.1 3.9E-09 8.3E-14 115.5 17.6 154 124-316 14-197 (563)
135 PRK11331 5-methylcytosine-spec 99.1 5.2E-10 1.1E-14 118.7 10.0 126 158-298 193-358 (459)
136 PRK14954 DNA polymerase III su 99.0 5E-09 1.1E-13 115.6 17.3 164 123-326 13-220 (620)
137 PF07724 AAA_2: AAA domain (Cd 99.0 9.2E-11 2E-15 109.7 2.8 122 158-283 2-136 (171)
138 PRK08451 DNA polymerase III su 99.0 8.1E-09 1.7E-13 112.1 16.7 153 124-316 12-195 (535)
139 PRK12377 putative replication 99.0 1E-09 2.2E-14 108.5 8.8 132 117-277 65-206 (248)
140 KOG2028 ATPase related to the 99.0 2.6E-09 5.7E-14 109.8 11.6 129 146-307 152-291 (554)
141 PRK07471 DNA polymerase III su 99.0 1.2E-08 2.6E-13 106.2 16.6 152 156-335 38-239 (365)
142 TIGR03346 chaperone_ClpB ATP-d 99.0 1.5E-08 3.3E-13 115.8 17.4 132 159-309 595-775 (852)
143 TIGR02902 spore_lonB ATP-depen 99.0 2.9E-09 6.3E-14 115.7 10.8 47 268-316 235-282 (531)
144 PRK05707 DNA polymerase III su 99.0 6.4E-09 1.4E-13 106.8 12.8 149 156-334 19-203 (328)
145 TIGR03345 VI_ClpV1 type VI sec 98.9 6E-09 1.3E-13 118.9 12.9 99 157-276 593-718 (852)
146 PRK10865 protein disaggregatio 98.9 2.6E-08 5.6E-13 113.9 17.8 133 161-310 600-779 (857)
147 CHL00095 clpC Clp protease ATP 98.9 2.2E-08 4.9E-13 114.0 15.5 103 156-277 535-662 (821)
148 PRK05564 DNA polymerase III su 98.9 4.9E-08 1.1E-12 98.9 16.2 147 155-332 22-188 (313)
149 COG0714 MoxR-like ATPases [Gen 98.9 3.1E-09 6.6E-14 108.5 7.3 134 160-310 44-203 (329)
150 PRK07952 DNA replication prote 98.9 8.3E-09 1.8E-13 101.9 10.2 131 118-277 64-205 (244)
151 COG1219 ClpX ATP-dependent pro 98.9 6.7E-09 1.4E-13 105.3 9.6 125 160-286 98-245 (408)
152 COG0470 HolB ATPase involved i 98.9 1.1E-08 2.5E-13 102.0 10.6 109 157-293 22-163 (325)
153 PRK09112 DNA polymerase III su 98.9 4.5E-08 9.8E-13 101.4 14.8 152 155-335 41-241 (351)
154 PRK06921 hypothetical protein; 98.8 2.1E-08 4.5E-13 100.1 10.9 139 117-277 75-225 (266)
155 PF05673 DUF815: Protein of un 98.8 7.4E-08 1.6E-12 95.0 14.4 149 144-317 37-214 (249)
156 PRK06964 DNA polymerase III su 98.8 6.7E-08 1.4E-12 99.9 14.6 146 157-335 19-226 (342)
157 PHA02244 ATPase-like protein 98.8 1.7E-08 3.8E-13 104.9 10.2 117 159-298 119-262 (383)
158 PRK06526 transposase; Provisio 98.8 2.9E-08 6.3E-13 98.5 11.3 98 156-277 95-201 (254)
159 PRK06835 DNA replication prote 98.8 1.4E-08 3E-13 104.4 8.9 136 117-277 133-289 (329)
160 TIGR02903 spore_lon_C ATP-depe 98.8 7.3E-08 1.6E-12 106.6 15.2 156 158-328 174-385 (615)
161 PRK09087 hypothetical protein; 98.8 2.5E-08 5.5E-13 97.1 9.8 160 122-328 17-186 (226)
162 PRK14971 DNA polymerase III su 98.8 6.8E-08 1.5E-12 106.8 14.1 173 109-326 5-214 (614)
163 PRK08939 primosomal protein Dn 98.8 2.7E-08 5.7E-13 101.3 10.1 135 116-277 117-261 (306)
164 KOG0745 Putative ATP-dependent 98.8 3.4E-08 7.4E-13 103.4 10.8 132 160-295 227-381 (564)
165 TIGR03015 pepcterm_ATPase puta 98.8 8.6E-07 1.9E-11 86.7 19.6 146 159-330 43-234 (269)
166 PRK07399 DNA polymerase III su 98.7 1.5E-07 3.3E-12 96.1 14.4 150 157-335 24-222 (314)
167 COG2812 DnaX DNA polymerase II 98.7 3.8E-08 8.2E-13 106.2 10.3 164 124-326 14-212 (515)
168 COG1474 CDC6 Cdc6-related prot 98.7 3.4E-07 7.4E-12 95.5 16.5 144 159-329 42-229 (366)
169 TIGR00602 rad24 checkpoint pro 98.7 2.8E-07 6.1E-12 102.1 16.6 40 147-186 96-137 (637)
170 PRK08181 transposase; Validate 98.7 3.6E-08 7.8E-13 98.7 8.3 95 158-277 105-209 (269)
171 PRK08769 DNA polymerase III su 98.7 1.6E-07 3.5E-12 96.2 13.1 149 155-335 22-209 (319)
172 COG0593 DnaA ATPase involved i 98.7 1.6E-07 3.5E-12 98.8 13.0 180 118-329 79-278 (408)
173 PRK13407 bchI magnesium chelat 98.7 6.9E-08 1.5E-12 99.5 10.0 83 212-310 129-216 (334)
174 PRK06871 DNA polymerase III su 98.7 1.7E-07 3.6E-12 96.3 12.7 153 155-335 20-204 (325)
175 PRK08058 DNA polymerase III su 98.7 4.9E-07 1.1E-11 92.8 15.2 126 155-308 24-180 (329)
176 CHL00081 chlI Mg-protoporyphyr 98.7 2.7E-07 5.8E-12 95.7 13.1 85 210-310 143-232 (350)
177 smart00350 MCM minichromosome 98.6 2.9E-08 6.3E-13 107.4 5.1 134 161-310 238-400 (509)
178 PF01695 IstB_IS21: IstB-like 98.6 2.5E-08 5.3E-13 93.9 3.3 28 156-183 44-71 (178)
179 PRK07993 DNA polymerase III su 98.6 3.7E-07 8E-12 94.1 11.6 149 155-334 20-204 (334)
180 PF07726 AAA_3: ATPase family 98.6 8.1E-08 1.8E-12 86.3 5.2 112 162-290 2-129 (131)
181 COG0542 clpA ATP-binding subun 98.5 3.9E-07 8.4E-12 102.2 10.8 121 163-309 195-345 (786)
182 COG0542 clpA ATP-binding subun 98.5 6.7E-07 1.4E-11 100.3 12.6 101 155-276 516-643 (786)
183 KOG0741 AAA+-type ATPase [Post 98.5 2.3E-07 5.1E-12 99.2 8.5 131 157-306 536-682 (744)
184 PRK06090 DNA polymerase III su 98.5 1.6E-06 3.5E-11 88.9 14.3 149 155-335 21-202 (319)
185 PRK04132 replication factor C 98.5 8.9E-07 1.9E-11 100.7 13.1 147 163-337 568-734 (846)
186 TIGR02442 Cob-chelat-sub cobal 98.5 1.9E-06 4.1E-11 95.8 15.4 84 211-310 126-214 (633)
187 COG1220 HslU ATP-dependent pro 98.5 1.8E-06 4E-11 88.5 13.5 92 209-306 248-345 (444)
188 TIGR02031 BchD-ChlD magnesium 98.5 5.7E-07 1.2E-11 99.1 10.3 135 160-310 17-174 (589)
189 PRK08699 DNA polymerase III su 98.5 4.8E-07 1E-11 92.9 8.9 124 157-308 19-183 (325)
190 COG1484 DnaC DNA replication p 98.5 4.6E-07 9.9E-12 90.0 8.4 66 158-223 104-179 (254)
191 COG1224 TIP49 DNA helicase TIP 98.5 7.9E-06 1.7E-10 84.4 17.1 32 155-186 61-92 (450)
192 TIGR02030 BchI-ChlI magnesium 98.4 6E-07 1.3E-11 92.7 8.6 85 210-310 130-219 (337)
193 PF13177 DNA_pol3_delta2: DNA 98.4 6E-07 1.3E-11 83.1 7.6 109 156-292 16-155 (162)
194 PF03969 AFG1_ATPase: AFG1-lik 98.4 6E-07 1.3E-11 93.5 8.2 33 154-186 57-89 (362)
195 PRK09183 transposase/IS protei 98.4 5.4E-07 1.2E-11 89.6 7.3 96 156-277 99-206 (259)
196 PRK13531 regulatory ATPase Rav 98.4 2.9E-06 6.4E-11 91.2 13.0 125 159-308 39-192 (498)
197 PF13401 AAA_22: AAA domain; P 98.3 2.1E-06 4.6E-11 74.5 7.8 67 158-224 3-100 (131)
198 PF05729 NACHT: NACHT domain 98.3 6.9E-06 1.5E-10 73.3 11.3 134 160-312 1-165 (166)
199 PF12775 AAA_7: P-loop contain 98.3 3.8E-07 8.1E-12 91.4 3.3 136 159-310 33-193 (272)
200 cd01120 RecA-like_NTPases RecA 98.3 2.8E-06 6.2E-11 75.1 8.1 105 162-282 2-142 (165)
201 PF00931 NB-ARC: NB-ARC domain 98.3 1.9E-05 4E-10 77.8 14.4 26 157-182 17-42 (287)
202 KOG0991 Replication factor C, 98.2 3.7E-06 8.1E-11 82.7 8.2 126 161-316 50-191 (333)
203 COG2607 Predicted ATPase (AAA+ 98.2 1.8E-05 3.8E-10 78.2 12.6 149 147-317 73-246 (287)
204 PF03215 Rad17: Rad17 cell cyc 98.2 7.4E-06 1.6E-10 89.1 10.7 42 145-186 29-72 (519)
205 PF00910 RNA_helicase: RNA hel 98.2 3E-06 6.5E-11 72.9 6.1 97 162-276 1-107 (107)
206 PF00158 Sigma54_activat: Sigm 98.2 2.7E-06 5.8E-11 79.5 5.7 117 158-292 21-156 (168)
207 PHA00729 NTP-binding motif con 98.2 4.1E-06 8.9E-11 82.0 7.1 25 160-184 18-42 (226)
208 PLN03210 Resistant to P. syrin 98.2 0.0001 2.2E-09 87.3 19.9 148 155-337 203-397 (1153)
209 PF06068 TIP49: TIP49 C-termin 98.1 1.2E-05 2.6E-10 83.7 10.2 28 158-185 49-76 (398)
210 PRK11388 DNA-binding transcrip 98.1 6.9E-06 1.5E-10 91.1 8.0 154 122-303 321-499 (638)
211 PF01637 Arch_ATPase: Archaeal 98.1 3.8E-05 8.3E-10 72.1 11.7 27 158-184 19-45 (234)
212 COG1618 Predicted nucleotide k 98.1 3.2E-05 6.8E-10 72.3 10.7 29 156-184 2-30 (179)
213 PHA02774 E1; Provisional 98.1 9.8E-06 2.1E-10 88.6 8.3 111 145-279 422-535 (613)
214 TIGR02974 phageshock_pspF psp 98.0 8.6E-06 1.9E-10 83.7 6.5 129 158-303 21-176 (329)
215 PF13173 AAA_14: AAA domain 98.0 4.6E-05 1E-09 67.2 10.3 63 160-223 3-73 (128)
216 TIGR02237 recomb_radB DNA repa 98.0 2.7E-05 5.9E-10 73.7 9.2 72 154-225 7-111 (209)
217 PRK11608 pspF phage shock prot 98.0 1.6E-05 3.5E-10 81.5 7.5 129 158-303 28-183 (326)
218 KOG1942 DNA helicase, TBP-inte 98.0 7E-05 1.5E-09 75.9 11.8 28 159-186 64-91 (456)
219 PTZ00111 DNA replication licen 98.0 1.1E-05 2.4E-10 92.0 6.7 131 160-306 493-653 (915)
220 TIGR01817 nifA Nif-specific re 98.0 1.4E-05 3E-10 87.0 7.3 127 158-302 218-372 (534)
221 KOG1514 Origin recognition com 98.0 5.8E-05 1.3E-09 83.5 11.7 124 161-312 424-591 (767)
222 KOG0990 Replication factor C, 97.9 2.8E-05 6E-10 79.4 8.3 125 161-313 64-206 (360)
223 PRK10820 DNA-binding transcrip 97.9 3.3E-05 7.1E-10 84.1 9.2 155 122-303 200-381 (520)
224 PF06309 Torsin: Torsin; Inte 97.9 9.7E-05 2.1E-09 66.3 9.9 43 141-183 35-77 (127)
225 PRK09862 putative ATP-dependen 97.9 2.9E-05 6.3E-10 84.3 7.8 123 158-296 209-385 (506)
226 TIGR00368 Mg chelatase-related 97.9 1.8E-05 4E-10 85.7 6.3 125 158-298 210-390 (499)
227 PF03266 NTPase_1: NTPase; In 97.9 3.3E-06 7.2E-11 78.9 0.2 22 162-183 2-23 (168)
228 KOG2170 ATPase of the AAA+ sup 97.9 6.1E-05 1.3E-09 76.4 9.0 86 139-224 90-191 (344)
229 COG1485 Predicted ATPase [Gene 97.8 4.9E-05 1.1E-09 78.5 8.3 100 156-282 62-177 (367)
230 cd01124 KaiC KaiC is a circadi 97.8 0.00011 2.3E-09 67.8 9.7 22 162-183 2-23 (187)
231 PRK05917 DNA polymerase III su 97.8 7.9E-05 1.7E-09 75.6 9.5 111 155-293 15-149 (290)
232 PF05621 TniB: Bacterial TniB 97.8 0.00019 4.1E-09 73.1 11.9 81 144-224 46-158 (302)
233 TIGR02329 propionate_PrpR prop 97.8 5.8E-05 1.3E-09 82.4 8.6 128 158-303 234-390 (526)
234 KOG2035 Replication factor C, 97.8 0.00018 3.8E-09 72.6 11.2 129 161-317 36-206 (351)
235 PRK07276 DNA polymerase III su 97.8 0.00047 1E-08 70.0 14.5 146 155-334 20-197 (290)
236 PRK05022 anaerobic nitric oxid 97.8 5.8E-05 1.3E-09 81.8 8.5 128 158-303 209-364 (509)
237 PRK15429 formate hydrogenlyase 97.8 6.3E-05 1.4E-09 84.3 8.9 128 158-303 398-553 (686)
238 COG1239 ChlI Mg-chelatase subu 97.8 0.00027 5.8E-09 74.6 12.3 90 209-313 142-235 (423)
239 KOG1968 Replication factor C, 97.7 2.5E-05 5.4E-10 89.3 4.7 144 161-332 359-525 (871)
240 PRK06067 flagellar accessory p 97.7 0.0002 4.3E-09 69.4 10.1 71 154-224 20-133 (234)
241 KOG1970 Checkpoint RAD17-RFC c 97.7 0.00017 3.6E-09 78.2 10.2 39 147-186 94-137 (634)
242 PRK15424 propionate catabolism 97.7 8.8E-05 1.9E-09 81.2 8.1 128 158-303 241-405 (538)
243 PHA02624 large T antigen; Prov 97.7 0.00017 3.8E-09 79.3 10.3 140 154-304 426-568 (647)
244 PF00493 MCM: MCM2/3/5 family 97.7 2.3E-05 4.9E-10 80.7 3.3 137 157-311 55-222 (331)
245 KOG1051 Chaperone HSP104 and r 97.7 0.0002 4.3E-09 81.9 10.2 102 157-279 589-713 (898)
246 TIGR02012 tigrfam_recA protein 97.6 0.00024 5.3E-09 73.1 9.5 73 154-226 50-148 (321)
247 PRK09361 radB DNA repair and r 97.6 0.00022 4.7E-09 68.6 8.6 30 154-183 18-47 (225)
248 COG3829 RocR Transcriptional r 97.6 6E-05 1.3E-09 81.5 5.0 154 121-302 240-422 (560)
249 PRK05818 DNA polymerase III su 97.6 0.00051 1.1E-08 68.8 11.0 114 157-299 5-147 (261)
250 PF14532 Sigma54_activ_2: Sigm 97.6 6.3E-05 1.4E-09 67.2 4.1 60 159-225 21-83 (138)
251 PRK13695 putative NTPase; Prov 97.6 0.00037 8E-09 64.5 9.0 23 161-183 2-24 (174)
252 PRK00131 aroK shikimate kinase 97.6 7.6E-05 1.7E-09 67.7 4.4 30 157-186 2-31 (175)
253 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00044 9.6E-09 66.8 9.9 23 159-181 29-51 (213)
254 PF13207 AAA_17: AAA domain; P 97.5 6.3E-05 1.4E-09 64.7 3.3 26 161-186 1-26 (121)
255 cd01394 radB RadB. The archaea 97.5 0.00052 1.1E-08 65.5 9.3 31 154-184 14-44 (218)
256 smart00763 AAA_PrkA PrkA AAA d 97.5 0.00014 3.1E-09 75.8 5.8 28 158-185 77-104 (361)
257 KOG2227 Pre-initiation complex 97.5 0.0017 3.7E-08 69.5 13.7 163 144-330 159-364 (529)
258 KOG2383 Predicted ATPase [Gene 97.5 0.00022 4.8E-09 74.8 7.0 28 156-183 111-138 (467)
259 PRK07132 DNA polymerase III su 97.5 0.0013 2.9E-08 67.0 12.6 144 157-334 16-184 (299)
260 PRK15115 response regulator Gl 97.5 0.00014 3E-09 76.7 5.4 127 159-303 157-311 (444)
261 PRK11361 acetoacetate metaboli 97.5 0.0002 4.3E-09 75.6 6.5 126 159-302 166-319 (457)
262 cd01128 rho_factor Transcripti 97.5 0.00026 5.7E-09 70.3 7.0 29 157-185 14-42 (249)
263 cd00983 recA RecA is a bacter 97.4 0.00071 1.5E-08 69.8 10.0 73 154-226 50-148 (325)
264 TIGR00764 lon_rel lon-related 97.4 9E-05 2E-09 82.2 3.7 44 160-203 38-102 (608)
265 PRK08118 topology modulation p 97.4 0.00043 9.3E-09 64.4 7.1 26 161-186 3-28 (167)
266 COG4619 ABC-type uncharacteriz 97.4 0.00057 1.2E-08 64.8 7.7 27 157-183 27-53 (223)
267 cd01131 PilT Pilus retraction 97.4 0.00025 5.5E-09 67.5 5.5 60 161-220 3-83 (198)
268 cd03283 ABC_MutS-like MutS-lik 97.4 0.00049 1.1E-08 65.9 7.4 23 160-182 26-48 (199)
269 PF12774 AAA_6: Hydrolytic ATP 97.4 0.0012 2.6E-08 65.0 10.1 135 158-306 31-176 (231)
270 cd01121 Sms Sms (bacterial rad 97.4 0.00083 1.8E-08 70.5 9.5 71 155-225 78-172 (372)
271 TIGR02858 spore_III_AA stage I 97.3 0.00047 1E-08 69.3 7.3 26 160-185 112-137 (270)
272 PRK13947 shikimate kinase; Pro 97.3 0.0006 1.3E-08 62.3 7.5 26 161-186 3-28 (171)
273 TIGR01618 phage_P_loop phage n 97.3 0.00017 3.8E-09 70.4 3.9 26 157-182 10-35 (220)
274 PRK09354 recA recombinase A; P 97.3 0.00045 9.8E-09 71.9 7.1 72 154-225 55-152 (349)
275 PRK10923 glnG nitrogen regulat 97.3 0.0003 6.6E-09 74.8 5.8 129 158-303 160-315 (469)
276 PRK11823 DNA repair protein Ra 97.3 0.00098 2.1E-08 71.5 9.6 72 155-226 76-171 (446)
277 PF13671 AAA_33: AAA domain; P 97.3 0.0005 1.1E-08 60.6 5.8 25 162-186 2-26 (143)
278 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.001 2.3E-08 63.9 8.3 30 154-183 14-43 (235)
279 PRK09376 rho transcription ter 97.3 0.00058 1.3E-08 72.1 7.0 25 161-185 171-195 (416)
280 TIGR02688 conserved hypothetic 97.3 0.01 2.2E-07 63.4 16.2 65 156-223 206-272 (449)
281 cd01393 recA_like RecA is a b 97.2 0.0014 3E-08 62.7 9.0 30 154-183 14-43 (226)
282 PLN02200 adenylate kinase fami 97.2 0.0003 6.4E-09 69.1 4.4 33 154-186 38-70 (234)
283 KOG2680 DNA helicase TIP49, TB 97.2 0.0024 5.2E-08 65.2 10.7 32 155-186 62-93 (454)
284 PF05272 VirE: Virulence-assoc 97.2 0.0012 2.7E-08 63.3 8.2 62 153-224 46-108 (198)
285 PRK08533 flagellar accessory p 97.2 0.0025 5.4E-08 62.3 10.4 29 155-183 20-48 (230)
286 COG1221 PspF Transcriptional r 97.2 0.00029 6.4E-09 74.4 3.7 127 159-302 101-252 (403)
287 TIGR02915 PEP_resp_reg putativ 97.1 0.00054 1.2E-08 72.3 5.5 129 159-304 162-317 (445)
288 cd00464 SK Shikimate kinase (S 97.1 0.00039 8.4E-09 62.1 3.7 25 162-186 2-26 (154)
289 PRK14527 adenylate kinase; Pro 97.1 0.00046 1E-08 64.9 4.3 30 157-186 4-33 (191)
290 KOG0478 DNA replication licens 97.1 0.00059 1.3E-08 75.5 5.7 127 156-300 459-616 (804)
291 PRK14531 adenylate kinase; Pro 97.1 0.00047 1E-08 64.6 4.2 27 160-186 3-29 (183)
292 PRK03839 putative kinase; Prov 97.1 0.00039 8.4E-09 64.5 3.6 26 161-186 2-27 (180)
293 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00038 8.3E-09 64.4 3.5 25 162-186 2-26 (183)
294 COG0563 Adk Adenylate kinase a 97.1 0.00037 7.9E-09 65.9 3.4 26 161-186 2-27 (178)
295 TIGR01818 ntrC nitrogen regula 97.1 0.00057 1.2E-08 72.4 5.1 127 158-302 156-310 (463)
296 PLN03187 meiotic recombination 97.1 0.0027 6E-08 66.0 9.9 29 155-183 122-150 (344)
297 PRK12608 transcription termina 97.1 0.0011 2.4E-08 69.5 7.0 24 161-184 135-158 (380)
298 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00052 1.1E-08 63.3 3.9 26 161-186 5-30 (188)
299 PRK07261 topology modulation p 97.0 0.0015 3.3E-08 60.8 6.8 26 161-186 2-27 (171)
300 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0029 6.2E-08 61.8 9.0 29 154-182 16-44 (237)
301 PRK14532 adenylate kinase; Pro 97.0 0.00047 1E-08 64.3 3.3 26 161-186 2-27 (188)
302 PF06745 KaiC: KaiC; InterPro 97.0 0.002 4.3E-08 61.9 7.8 29 154-182 14-42 (226)
303 cd01130 VirB11-like_ATPase Typ 97.0 0.0017 3.6E-08 61.1 6.9 28 157-184 23-50 (186)
304 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0031 6.8E-08 62.6 9.1 29 154-182 31-59 (259)
305 PRK09519 recA DNA recombinatio 97.0 0.0017 3.6E-08 73.9 7.9 71 155-225 56-152 (790)
306 PRK13946 shikimate kinase; Pro 97.0 0.002 4.2E-08 60.5 7.1 29 158-186 9-37 (184)
307 cd02021 GntK Gluconate kinase 97.0 0.0021 4.6E-08 57.5 7.1 25 162-186 2-26 (150)
308 TIGR01313 therm_gnt_kin carboh 97.0 0.0016 3.5E-08 59.2 6.4 25 162-186 1-25 (163)
309 TIGR00767 rho transcription te 97.0 0.0019 4.1E-08 68.4 7.6 25 160-184 169-193 (415)
310 cd00984 DnaB_C DnaB helicase C 97.0 0.0052 1.1E-07 59.3 10.1 29 155-183 9-37 (242)
311 PRK15455 PrkA family serine pr 97.0 0.00078 1.7E-08 74.1 4.8 26 159-184 103-128 (644)
312 cd03243 ABC_MutS_homologs The 97.0 0.0036 7.8E-08 59.5 8.8 22 159-180 29-50 (202)
313 PRK06762 hypothetical protein; 97.0 0.00074 1.6E-08 61.6 3.9 27 159-185 2-28 (166)
314 cd03216 ABC_Carb_Monos_I This 97.0 0.001 2.3E-08 61.1 4.9 29 156-184 23-51 (163)
315 PF13521 AAA_28: AAA domain; P 97.0 0.0016 3.5E-08 59.4 6.1 24 162-186 2-25 (163)
316 PF13086 AAA_11: AAA domain; P 96.9 0.001 2.2E-08 62.4 4.8 23 161-183 19-41 (236)
317 cd02020 CMPK Cytidine monophos 96.9 0.00077 1.7E-08 59.4 3.7 25 162-186 2-26 (147)
318 KOG0480 DNA replication licens 96.9 0.0016 3.6E-08 71.6 6.9 157 159-333 378-564 (764)
319 PF13191 AAA_16: AAA ATPase do 96.9 0.0012 2.6E-08 60.3 5.0 38 146-183 11-48 (185)
320 cd01428 ADK Adenylate kinase ( 96.9 0.00066 1.4E-08 63.0 3.4 25 162-186 2-26 (194)
321 PRK13949 shikimate kinase; Pro 96.9 0.0016 3.4E-08 60.8 5.8 26 161-186 3-28 (169)
322 PRK04301 radA DNA repair and r 96.9 0.0036 7.7E-08 63.9 8.9 30 154-183 97-126 (317)
323 cd03238 ABC_UvrA The excision 96.9 0.0043 9.4E-08 58.5 8.7 26 156-181 18-43 (176)
324 PTZ00035 Rad51 protein; Provis 96.9 0.0039 8.6E-08 64.5 9.2 31 155-185 114-144 (337)
325 TIGR02236 recomb_radA DNA repa 96.9 0.0054 1.2E-07 62.1 10.0 31 154-184 90-120 (310)
326 PRK04040 adenylate kinase; Pro 96.9 0.0009 1.9E-08 63.6 3.9 29 158-186 1-31 (188)
327 PRK02496 adk adenylate kinase; 96.9 0.00088 1.9E-08 62.3 3.7 26 161-186 3-28 (184)
328 PF01078 Mg_chelatase: Magnesi 96.9 0.00075 1.6E-08 65.4 3.3 25 159-183 22-46 (206)
329 PRK05800 cobU adenosylcobinami 96.9 0.0049 1.1E-07 57.7 8.7 26 161-186 3-28 (170)
330 smart00534 MUTSac ATPase domai 96.9 0.0057 1.2E-07 57.5 9.2 19 162-180 2-20 (185)
331 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.011 2.3E-07 57.0 11.1 25 157-181 27-51 (204)
332 COG2074 2-phosphoglycerate kin 96.9 0.002 4.4E-08 64.2 6.2 63 138-202 65-130 (299)
333 PTZ00088 adenylate kinase 1; P 96.9 0.0011 2.4E-08 65.0 4.4 30 157-186 4-33 (229)
334 PF13238 AAA_18: AAA domain; P 96.9 0.00094 2E-08 57.2 3.4 22 162-183 1-22 (129)
335 TIGR01420 pilT_fam pilus retra 96.8 0.0018 3.9E-08 67.0 6.0 61 160-220 123-204 (343)
336 PF00448 SRP54: SRP54-type pro 96.8 0.0025 5.4E-08 61.1 6.3 26 159-184 1-26 (196)
337 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.0081 1.7E-07 57.7 9.9 29 154-182 11-39 (224)
338 PF05707 Zot: Zonular occluden 96.8 0.0022 4.8E-08 60.7 6.0 65 211-296 79-143 (193)
339 TIGR02238 recomb_DMC1 meiotic 96.8 0.0051 1.1E-07 63.1 8.8 28 155-182 92-119 (313)
340 PRK14530 adenylate kinase; Pro 96.8 0.001 2.3E-08 63.7 3.6 26 161-186 5-30 (215)
341 PRK10365 transcriptional regul 96.8 0.0027 5.8E-08 66.7 6.9 127 158-302 161-315 (441)
342 PRK13948 shikimate kinase; Pro 96.8 0.0027 5.9E-08 60.2 6.3 30 157-186 8-37 (182)
343 cd03228 ABCC_MRP_Like The MRP 96.8 0.0032 6.9E-08 58.2 6.6 29 156-184 25-53 (171)
344 cd00227 CPT Chloramphenicol (C 96.8 0.0014 3E-08 60.8 4.2 28 159-186 2-29 (175)
345 PRK00625 shikimate kinase; Pro 96.8 0.0012 2.5E-08 62.2 3.7 26 161-186 2-27 (173)
346 cd03247 ABCC_cytochrome_bd The 96.8 0.0025 5.4E-08 59.2 5.9 29 156-184 25-53 (178)
347 PRK06547 hypothetical protein; 96.8 0.0014 3.1E-08 61.5 4.2 30 157-186 13-42 (172)
348 PRK04296 thymidine kinase; Pro 96.8 0.0024 5.2E-08 60.5 5.7 24 160-183 3-26 (190)
349 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0016 3.4E-08 59.1 4.3 36 157-192 20-55 (133)
350 PRK08233 hypothetical protein; 96.8 0.0013 2.7E-08 60.4 3.8 26 159-184 3-28 (182)
351 PHA02530 pseT polynucleotide k 96.8 0.0038 8.2E-08 62.4 7.5 28 159-186 2-30 (300)
352 TIGR00416 sms DNA repair prote 96.8 0.01 2.2E-07 63.9 11.2 71 155-225 90-184 (454)
353 PRK14526 adenylate kinase; Pro 96.7 0.0021 4.5E-08 62.3 5.3 25 162-186 3-27 (211)
354 cd03284 ABC_MutS1 MutS1 homolo 96.7 0.0082 1.8E-07 58.2 9.4 22 160-181 31-52 (216)
355 COG3854 SpoIIIAA ncharacterize 96.7 0.0026 5.6E-08 63.0 5.8 24 160-183 138-161 (308)
356 cd03280 ABC_MutS2 MutS2 homolo 96.7 0.0052 1.1E-07 58.3 7.9 21 160-180 29-49 (200)
357 PRK13541 cytochrome c biogenes 96.7 0.0067 1.5E-07 57.1 8.5 28 156-183 23-50 (195)
358 KOG3347 Predicted nucleotide k 96.7 0.0012 2.6E-08 61.3 3.2 26 161-186 9-34 (176)
359 PRK14528 adenylate kinase; Pro 96.7 0.0015 3.2E-08 61.7 4.0 26 161-186 3-28 (186)
360 PRK06217 hypothetical protein; 96.7 0.0013 2.8E-08 61.6 3.5 26 161-186 3-28 (183)
361 cd00267 ABC_ATPase ABC (ATP-bi 96.7 0.0033 7.2E-08 57.0 6.1 29 157-185 23-51 (157)
362 PRK11607 potG putrescine trans 96.7 0.0027 5.9E-08 66.7 6.3 28 156-183 42-69 (377)
363 TIGR01351 adk adenylate kinase 96.7 0.0013 2.8E-08 62.8 3.5 25 162-186 2-26 (210)
364 PRK05541 adenylylsulfate kinas 96.7 0.0017 3.6E-08 60.1 4.1 30 156-185 4-33 (176)
365 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0021 4.5E-08 58.1 4.5 66 156-224 23-101 (144)
366 PRK00279 adk adenylate kinase; 96.7 0.0015 3.1E-08 62.7 3.7 26 161-186 2-27 (215)
367 PRK13764 ATPase; Provisional 96.7 0.0026 5.7E-08 70.5 6.0 28 158-185 256-283 (602)
368 cd00544 CobU Adenosylcobinamid 96.7 0.0071 1.5E-07 56.7 8.0 25 162-186 2-26 (169)
369 cd01122 GP4d_helicase GP4d_hel 96.7 0.0073 1.6E-07 59.5 8.5 29 155-183 26-54 (271)
370 cd02027 APSK Adenosine 5'-phos 96.6 0.0055 1.2E-07 55.8 7.0 22 162-183 2-23 (149)
371 COG3839 MalK ABC-type sugar tr 96.6 0.0032 7E-08 65.3 6.2 24 160-183 30-53 (338)
372 cd03227 ABC_Class2 ABC-type Cl 96.6 0.008 1.7E-07 55.2 8.0 99 159-281 21-145 (162)
373 PF00406 ADK: Adenylate kinase 96.6 0.0016 3.4E-08 58.8 3.2 23 164-186 1-23 (151)
374 COG1241 MCM2 Predicted ATPase 96.6 0.00029 6.4E-09 78.7 -1.9 130 160-306 320-479 (682)
375 cd03276 ABC_SMC6_euk Eukaryoti 96.6 0.016 3.4E-07 55.3 10.1 22 162-183 24-45 (198)
376 PRK04841 transcriptional regul 96.6 0.026 5.7E-07 64.4 13.6 28 157-184 30-57 (903)
377 PRK08154 anaerobic benzoate ca 96.6 0.0046 1E-07 63.1 6.6 45 142-186 115-160 (309)
378 COG1936 Predicted nucleotide k 96.6 0.0018 3.9E-08 61.2 3.3 25 161-186 2-26 (180)
379 PRK13538 cytochrome c biogenes 96.5 0.0081 1.8E-07 57.0 7.8 28 156-183 24-51 (204)
380 cd03115 SRP The signal recogni 96.5 0.0065 1.4E-07 55.9 6.8 23 161-183 2-24 (173)
381 COG1116 TauB ABC-type nitrate/ 96.5 0.0034 7.3E-08 62.4 5.2 25 158-182 28-52 (248)
382 cd03287 ABC_MSH3_euk MutS3 hom 96.5 0.0081 1.7E-07 58.7 7.7 25 157-181 29-53 (222)
383 PF08433 KTI12: Chromatin asso 96.5 0.004 8.6E-08 62.7 5.7 61 162-223 4-82 (270)
384 PF13245 AAA_19: Part of AAA d 96.5 0.0027 5.9E-08 51.8 3.7 24 160-183 11-35 (76)
385 cd03246 ABCC_Protease_Secretio 96.5 0.0098 2.1E-07 55.0 7.9 27 157-183 26-52 (173)
386 TIGR02788 VirB11 P-type DNA tr 96.5 0.0033 7.1E-08 64.1 5.1 29 156-184 141-169 (308)
387 PLN02674 adenylate kinase 96.5 0.0025 5.4E-08 63.3 4.1 30 157-186 29-58 (244)
388 PRK01184 hypothetical protein; 96.5 0.0022 4.8E-08 59.6 3.6 26 160-186 2-27 (184)
389 PRK03731 aroL shikimate kinase 96.5 0.0024 5.2E-08 58.5 3.7 26 161-186 4-29 (171)
390 COG0703 AroK Shikimate kinase 96.5 0.0039 8.5E-08 58.9 5.2 27 160-186 3-29 (172)
391 cd03214 ABC_Iron-Siderophores_ 96.5 0.0072 1.6E-07 56.3 6.9 28 156-183 22-49 (180)
392 PRK04182 cytidylate kinase; Pr 96.5 0.0025 5.4E-08 58.2 3.7 26 161-186 2-27 (180)
393 PRK05986 cob(I)alamin adenolsy 96.5 0.015 3.3E-07 55.8 9.2 108 160-295 23-171 (191)
394 PRK04220 2-phosphoglycerate ki 96.5 0.0037 8E-08 63.9 5.2 47 154-202 87-133 (301)
395 PF07693 KAP_NTPase: KAP famil 96.5 0.024 5.2E-07 57.0 11.1 35 150-184 11-45 (325)
396 PRK13406 bchD magnesium chelat 96.5 0.013 2.9E-07 64.9 9.9 131 148-296 12-166 (584)
397 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.015 3.3E-07 54.2 8.8 105 161-293 4-149 (159)
398 PRK12338 hypothetical protein; 96.5 0.0026 5.7E-08 65.5 4.0 30 157-186 2-31 (319)
399 PLN03186 DNA repair protein RA 96.5 0.0095 2.1E-07 61.9 8.2 29 155-183 119-147 (342)
400 PRK05973 replicative DNA helic 96.5 0.02 4.3E-07 56.7 10.0 30 154-183 59-88 (237)
401 PRK09452 potA putrescine/sperm 96.5 0.0049 1.1E-07 64.7 6.1 27 157-183 38-64 (375)
402 PRK14722 flhF flagellar biosyn 96.4 0.0026 5.6E-08 66.9 3.9 28 156-183 134-161 (374)
403 COG1102 Cmk Cytidylate kinase 96.4 0.0022 4.9E-08 60.1 3.1 26 161-186 2-27 (179)
404 cd02019 NK Nucleoside/nucleoti 96.4 0.003 6.5E-08 50.2 3.4 22 162-183 2-23 (69)
405 PRK06696 uridine kinase; Valid 96.4 0.0054 1.2E-07 59.3 5.8 29 156-184 19-47 (223)
406 PF04665 Pox_A32: Poxvirus A32 96.4 0.051 1.1E-06 54.0 12.7 127 156-310 10-170 (241)
407 TIGR02239 recomb_RAD51 DNA rep 96.4 0.0088 1.9E-07 61.4 7.6 29 154-182 91-119 (316)
408 PRK14974 cell division protein 96.4 0.0076 1.6E-07 62.5 7.1 26 158-183 139-164 (336)
409 COG0606 Predicted ATPase with 96.4 0.0025 5.5E-08 68.4 3.6 46 135-183 175-222 (490)
410 PRK05480 uridine/cytidine kina 96.4 0.0033 7.1E-08 59.8 4.0 28 157-184 4-31 (209)
411 KOG0477 DNA replication licens 96.4 0.0054 1.2E-07 67.6 6.0 137 160-312 483-652 (854)
412 TIGR02173 cyt_kin_arch cytidyl 96.4 0.0031 6.8E-08 57.2 3.7 26 161-186 2-27 (171)
413 PRK12339 2-phosphoglycerate ki 96.4 0.003 6.6E-08 60.6 3.7 29 158-186 2-30 (197)
414 PRK05439 pantothenate kinase; 96.4 0.0054 1.2E-07 63.0 5.7 40 145-184 72-111 (311)
415 cd03230 ABC_DR_subfamily_A Thi 96.4 0.011 2.5E-07 54.6 7.4 27 157-183 24-50 (173)
416 PRK04328 hypothetical protein; 96.4 0.0089 1.9E-07 59.1 7.0 28 155-182 19-46 (249)
417 TIGR03574 selen_PSTK L-seryl-t 96.4 0.0084 1.8E-07 58.8 6.8 23 162-184 2-24 (249)
418 PRK05057 aroK shikimate kinase 96.4 0.0039 8.5E-08 58.1 4.2 28 159-186 4-31 (172)
419 COG2204 AtoC Response regulato 96.3 0.01 2.2E-07 64.1 7.8 131 157-305 162-321 (464)
420 TIGR02782 TrbB_P P-type conjug 96.3 0.0038 8.3E-08 63.6 4.3 26 158-183 131-156 (299)
421 TIGR01613 primase_Cterm phage/ 96.3 0.015 3.3E-07 58.9 8.5 66 154-223 71-140 (304)
422 COG2274 SunT ABC-type bacterio 96.3 0.0089 1.9E-07 67.7 7.4 26 157-182 497-522 (709)
423 PRK13975 thymidylate kinase; P 96.3 0.0075 1.6E-07 56.3 5.8 27 160-186 3-29 (196)
424 cd03286 ABC_MSH6_euk MutS6 hom 96.3 0.0096 2.1E-07 58.1 6.5 26 157-182 28-53 (218)
425 PF08423 Rad51: Rad51; InterP 96.3 0.01 2.2E-07 59.1 6.9 32 154-185 33-64 (256)
426 COG1120 FepC ABC-type cobalami 96.3 0.0075 1.6E-07 60.4 5.8 29 156-184 25-53 (258)
427 PRK13546 teichoic acids export 96.2 0.017 3.8E-07 57.5 8.5 29 155-183 46-74 (264)
428 TIGR00235 udk uridine kinase. 96.2 0.0041 8.9E-08 59.3 3.8 26 159-184 6-31 (207)
429 PRK13900 type IV secretion sys 96.2 0.0054 1.2E-07 63.5 4.9 29 157-185 158-186 (332)
430 PTZ00202 tuzin; Provisional 96.2 0.022 4.8E-07 61.4 9.5 39 148-186 275-313 (550)
431 PRK13851 type IV secretion sys 96.2 0.005 1.1E-07 64.1 4.6 30 156-185 159-188 (344)
432 PF00485 PRK: Phosphoribulokin 96.2 0.0042 9.2E-08 58.6 3.8 26 161-186 1-26 (194)
433 TIGR01526 nadR_NMN_Atrans nico 96.2 0.01 2.2E-07 61.1 6.8 28 159-186 162-189 (325)
434 cd03223 ABCD_peroxisomal_ALDP 96.2 0.0093 2E-07 55.0 5.9 29 156-184 24-52 (166)
435 PRK09302 circadian clock prote 96.2 0.018 3.8E-07 62.6 8.9 28 155-182 27-54 (509)
436 TIGR02525 plasmid_TraJ plasmid 96.2 0.0063 1.4E-07 64.0 5.2 60 161-220 151-234 (372)
437 PRK14529 adenylate kinase; Pro 96.2 0.0043 9.3E-08 60.8 3.7 25 162-186 3-27 (223)
438 PRK05537 bifunctional sulfate 96.2 0.0083 1.8E-07 66.3 6.1 55 130-185 364-418 (568)
439 cd01129 PulE-GspE PulE/GspE Th 96.2 0.0073 1.6E-07 60.4 5.2 61 161-221 82-159 (264)
440 PRK00300 gmk guanylate kinase; 96.1 0.005 1.1E-07 58.0 3.8 28 157-184 3-30 (205)
441 PRK11176 lipid transporter ATP 96.1 0.01 2.3E-07 64.9 6.8 28 156-183 366-393 (582)
442 PRK11174 cysteine/glutathione 96.1 0.01 2.2E-07 65.2 6.7 28 156-183 373-400 (588)
443 PRK13537 nodulation ABC transp 96.1 0.0091 2E-07 60.7 6.0 27 157-183 31-57 (306)
444 cd03222 ABC_RNaseL_inhibitor T 96.1 0.012 2.7E-07 55.4 6.4 66 156-223 22-101 (177)
445 PRK11650 ugpC glycerol-3-phosp 96.1 0.01 2.2E-07 61.9 6.3 28 156-183 27-54 (356)
446 TIGR02322 phosphon_PhnN phosph 96.1 0.0048 1E-07 57.0 3.5 25 161-185 3-27 (179)
447 PRK13657 cyclic beta-1,2-gluca 96.1 0.0077 1.7E-07 66.2 5.7 28 156-183 358-385 (588)
448 TIGR00554 panK_bact pantothena 96.1 0.0095 2.1E-07 60.6 5.8 38 147-184 50-87 (290)
449 COG4178 ABC-type uncharacteriz 96.1 0.017 3.6E-07 64.1 8.0 28 155-182 415-442 (604)
450 PRK13894 conjugal transfer ATP 96.1 0.0059 1.3E-07 62.8 4.3 59 158-220 147-228 (319)
451 PLN02459 probable adenylate ki 96.1 0.0065 1.4E-07 61.0 4.5 28 159-186 29-56 (261)
452 COG2874 FlaH Predicted ATPases 96.1 0.035 7.6E-07 54.4 9.2 110 155-286 24-176 (235)
453 COG3842 PotA ABC-type spermidi 96.1 0.0051 1.1E-07 64.1 3.7 22 161-182 33-54 (352)
454 PRK00889 adenylylsulfate kinas 96.1 0.0064 1.4E-07 56.1 4.0 27 158-184 3-29 (175)
455 cd03231 ABC_CcmA_heme_exporter 96.0 0.022 4.8E-07 54.0 7.7 28 156-183 23-50 (201)
456 COG3604 FhlA Transcriptional r 96.0 0.005 1.1E-07 66.5 3.6 117 157-291 244-379 (550)
457 PRK13833 conjugal transfer pro 96.0 0.0068 1.5E-07 62.6 4.5 25 159-183 144-168 (323)
458 PRK10790 putative multidrug tr 96.0 0.021 4.6E-07 62.8 8.6 28 156-183 364-391 (592)
459 PRK10416 signal recognition pa 96.0 0.017 3.7E-07 59.4 7.4 28 157-184 112-139 (318)
460 PF09848 DUF2075: Uncharacteri 96.0 0.0073 1.6E-07 62.5 4.6 23 161-183 3-25 (352)
461 TIGR01425 SRP54_euk signal rec 96.0 0.041 8.9E-07 59.0 10.3 27 157-183 98-124 (429)
462 COG4088 Predicted nucleotide k 96.0 0.015 3.2E-07 56.9 6.3 25 161-185 3-27 (261)
463 PRK08099 bifunctional DNA-bind 96.0 0.017 3.7E-07 61.2 7.4 28 159-186 219-246 (399)
464 PF00437 T2SE: Type II/IV secr 96.0 0.0069 1.5E-07 59.8 4.2 61 157-221 125-207 (270)
465 PF00488 MutS_V: MutS domain V 96.0 0.025 5.4E-07 55.7 8.0 24 159-182 43-66 (235)
466 cd01672 TMPK Thymidine monopho 95.9 0.014 3E-07 53.8 5.8 23 161-183 2-24 (200)
467 PRK00771 signal recognition pa 95.9 0.015 3.2E-07 62.5 6.7 27 157-183 93-119 (437)
468 TIGR03797 NHPM_micro_ABC2 NHPM 95.9 0.022 4.7E-07 63.9 8.4 29 155-183 475-503 (686)
469 TIGR01188 drrA daunorubicin re 95.9 0.021 4.6E-07 57.8 7.5 28 156-183 16-43 (302)
470 TIGR00455 apsK adenylylsulfate 95.9 0.025 5.4E-07 52.7 7.5 28 156-183 15-42 (184)
471 TIGR00064 ftsY signal recognit 95.9 0.021 4.6E-07 57.4 7.4 28 156-183 69-96 (272)
472 TIGR03522 GldA_ABC_ATP gliding 95.9 0.0097 2.1E-07 60.2 5.0 28 156-183 25-52 (301)
473 TIGR03263 guanyl_kin guanylate 95.9 0.0052 1.1E-07 56.6 2.7 25 160-184 2-26 (180)
474 KOG1051 Chaperone HSP104 and r 95.9 0.025 5.5E-07 65.2 8.7 124 160-309 209-362 (898)
475 TIGR02868 CydC thiol reductant 95.9 0.019 4.2E-07 62.1 7.6 28 156-183 358-385 (529)
476 COG1124 DppF ABC-type dipeptid 95.9 0.013 2.8E-07 58.2 5.6 26 157-182 31-56 (252)
477 COG1373 Predicted ATPase (AAA+ 95.9 0.042 9.2E-07 58.2 9.8 76 148-226 27-109 (398)
478 PRK13536 nodulation factor exp 95.9 0.02 4.3E-07 59.3 7.2 28 156-183 64-91 (340)
479 TIGR00750 lao LAO/AO transport 95.9 0.025 5.4E-07 57.4 7.8 29 155-183 30-58 (300)
480 TIGR03265 PhnT2 putative 2-ami 95.9 0.018 4E-07 59.9 6.9 27 157-183 28-54 (353)
481 PRK10867 signal recognition pa 95.9 0.025 5.3E-07 60.7 8.0 27 157-183 98-124 (433)
482 TIGR00708 cobA cob(I)alamin ad 95.9 0.041 8.9E-07 52.1 8.6 106 162-295 8-153 (173)
483 TIGR02857 CydD thiol reductant 95.9 0.016 3.6E-07 62.7 6.7 28 156-183 345-372 (529)
484 PRK14730 coaE dephospho-CoA ki 95.9 0.012 2.7E-07 56.0 5.1 26 161-186 3-28 (195)
485 PRK13765 ATP-dependent proteas 95.9 0.0045 9.7E-08 69.3 2.4 25 160-184 51-75 (637)
486 cd02023 UMPK Uridine monophosp 95.9 0.0069 1.5E-07 57.0 3.3 22 162-183 2-23 (198)
487 TIGR01663 PNK-3'Pase polynucle 95.9 0.017 3.7E-07 63.3 6.8 55 157-215 367-425 (526)
488 COG1127 Ttg2A ABC-type transpo 95.8 0.034 7.4E-07 55.3 8.1 27 157-183 32-58 (263)
489 PF05970 PIF1: PIF1-like helic 95.8 0.02 4.3E-07 59.7 6.8 29 157-185 20-48 (364)
490 cd03239 ABC_SMC_head The struc 95.8 0.029 6.3E-07 52.7 7.3 25 161-185 24-48 (178)
491 KOG0058 Peptide exporter, ABC 95.8 0.03 6.6E-07 62.8 8.3 28 155-182 490-517 (716)
492 PF02367 UPF0079: Uncharacteri 95.8 0.01 2.2E-07 53.1 3.8 35 157-191 13-47 (123)
493 COG4608 AppF ABC-type oligopep 95.7 0.014 3E-07 58.7 5.1 29 156-184 36-64 (268)
494 PF06414 Zeta_toxin: Zeta toxi 95.7 0.018 3.9E-07 54.6 5.7 28 156-183 12-39 (199)
495 PRK14738 gmk guanylate kinase; 95.7 0.0093 2E-07 57.1 3.7 27 156-182 10-36 (206)
496 PRK09302 circadian clock prote 95.7 0.033 7.2E-07 60.4 8.4 29 155-183 269-297 (509)
497 cd02022 DPCK Dephospho-coenzym 95.7 0.012 2.7E-07 54.9 4.4 24 162-186 2-25 (179)
498 TIGR02655 circ_KaiC circadian 95.7 0.024 5.2E-07 61.4 7.2 30 154-183 258-287 (484)
499 TIGR02203 MsbA_lipidA lipid A 95.7 0.021 4.6E-07 62.3 6.8 28 156-183 355-382 (571)
500 TIGR02204 MsbA_rel ABC transpo 95.7 0.022 4.7E-07 62.3 6.8 28 156-183 363-390 (576)
No 1
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=3.8e-95 Score=739.18 Aligned_cols=399 Identities=74% Similarity=1.131 Sum_probs=378.0
Q ss_pred ccccccccccccCCCCcccccccccccccccccccccccccccccceEEEeehhhhhhhhhhcccccccccccccccccC
Q 012418 9 GAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITR 88 (464)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 88 (464)
+++++ .++++++++++++.|.++|||.++++.......+.......+++++.++.||+++|+|+++++|++++||+|++
T Consensus 2 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 80 (413)
T PLN00020 2 GAVNR-ASLSLSAVASGASSPPSSAFLGSKVKVSSRRTSSARKSKSSVPVSEEDESKQSEQSSWRGLAQDISGDDYDITR 80 (413)
T ss_pred ccccc-cccccCCCccCCCCCCchhcccccccccccccccccccccccccccccccccccccchhccccccccchhhhhh
Confidence 56676 88999999999999999999999999866655566666667788899999999999999999999999999999
Q ss_pred CCcceeecccCccCCcchhhhhcccccccccccccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCC
Q 012418 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGK 168 (464)
Q Consensus 89 ~~~~~d~lf~~~~~~g~~~~i~~~~~~~~~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPP 168 (464)
|+||||+||+++++.|+|++|+++++|. .+.++|+|++++|||+|+|+|++++|++|||+.++|+++|+||||||||
T Consensus 81 g~g~vd~lf~~~~~~g~~~~i~~~~~~~---~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPP 157 (413)
T PLN00020 81 GKGMVDSLFQGPFGLGTDSDIASSYDYL---QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGK 157 (413)
T ss_pred cCCchhhhhcCCccCCcchhhhhhhHHH---hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCC
Confidence 9999999999999999999999999887 6788899999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHH-HhCCcEEEEeccccccccCCCCCCccchh
Q 012418 169 GQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADII-KKGKMCCLFINDLDAGAGRMGGTTQYTVN 236 (464)
Q Consensus 169 GtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~-~~~~P~ILfIDEIDal~~~r~~~~~~~~~ 236 (464)
|||||++|++||+++|++ +|+||++++||++|+.|.+.+ ++.+||||||||||+++++|+ ..+++++
T Consensus 158 GcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~-~~~~tv~ 236 (413)
T PLN00020 158 GQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG-TTQYTVN 236 (413)
T ss_pred CCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC-CCCcchH
Confidence 999999999999999988 999999999999999998877 478999999999999999987 5788999
Q ss_pred hHHHHHHHHhhhcCCCcccCCCcc-ccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeCCCHHHHHHHHHhhcCCCCC
Q 012418 237 NQMVNATLMNIADNPTNVQLPGMY-NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 315 (464)
Q Consensus 237 ~~~v~~~L~~llD~~~~v~ldG~~-~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~iP~~eeR~eIl~~~~~~~~v 315 (464)
+|+++++||+++|+|++|+++|.| ..+...+||||+|||+|+.|||||+||||||++||+|+.++|.+|++.+++++++
T Consensus 237 ~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l 316 (413)
T PLN00020 237 NQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGV 316 (413)
T ss_pred HHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCC
Confidence 999999999999999999999998 4556789999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHHhchhhhhhhhhcCCCCCCCcCCCccCHHHHHHHhHhhHHHHh
Q 012418 316 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQE 395 (464)
Q Consensus 316 ~~~~la~lt~gfsgadLd~~~alra~~~~~~i~~~i~~~~~e~l~~~l~~~~~~~~~~~~~~~t~~~Lleag~~lv~Eqe 395 (464)
+..+|.++++.|+||+||||||||+++||++|++||.++|.|+++++|+++++++|.|++|.+|+++|+++|+++++|||
T Consensus 317 ~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~eq~ 396 (413)
T PLN00020 317 SREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVREQE 396 (413)
T ss_pred CHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHhchhcC
Q 012418 396 NVKRVQLADKYLSEAAL 412 (464)
Q Consensus 396 ~v~~~~l~~~yl~~~~l 412 (464)
+|++++|+++||++++|
T Consensus 397 ~v~~~~l~~~y~~~~~~ 413 (413)
T PLN00020 397 NVKRVQLSDEYLKNAAL 413 (413)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999653
No 2
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-62 Score=486.28 Aligned_cols=365 Identities=26% Similarity=0.353 Sum_probs=315.1
Q ss_pred CccceeecccccccccccccCCCCcc-ccc--cccccccccccccccccccc-ccccceEEEeehhh----hhhhhhhcc
Q 012418 1 MAAVVSTVGAVNNALPLKINGSSRFS-LVP--SSVFLGKSLKKVSSKVSQQR-ILSKSFKVVSEYDE----EKQTSQDRW 72 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~ 72 (464)
|++..+++++.++ .||..|++++++ ..+ ++.|+++..-|+.+-...-. +-.+.++|....++ -|+|+.+||
T Consensus 1 ~~~~~~~al~~~r-~~L~~~~~~~~~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpry 79 (388)
T KOG0651|consen 1 MMAERNKALAEYR-KPLLSHRSISSALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRY 79 (388)
T ss_pred CchHHHHHHHHhh-hhhhhccchhhHHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcE
Confidence 5667788888888 899999998887 444 78899988777644433222 22234555543333 389999999
Q ss_pred cccccccccccccccCCCcceeecccCccCCcchhhhhcccccccccccccccccccCccCcchhhhhHHHHHHHHhhhh
Q 012418 73 AGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLN 152 (464)
Q Consensus 73 ~~~~~~~~~~~~~i~~~~~~~d~lf~~~~~~g~~~~i~~~~~~~~~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~ 152 (464)
- ..|+.|.||++|++|++|++++|+-+++.+++.++...|+|.++..++++|+++.|.+|+.++|+|++.+|+.+|++.
T Consensus 80 v-vg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf 158 (388)
T KOG0651|consen 80 V-VGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELF 158 (388)
T ss_pred E-EEcccccchhhhccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhc
Confidence 7 999999999999999999999999999989888888889999999999999999999999999999999999999999
Q ss_pred CC-CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccc
Q 012418 153 LP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 220 (464)
Q Consensus 153 ~~-gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEI 220 (464)
++ |+++|+|+|||||||||||+||++||..+|++ +|+||++++||++|+.| +...|||||+|||
T Consensus 159 ~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA----~~~~pciifmdei 234 (388)
T KOG0651|consen 159 LRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYA----REVIPCIIFMDEI 234 (388)
T ss_pred cccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHH----hhhCceEEeehhh
Confidence 76 99999999999999999999999999999998 89999999999999999 8889999999999
Q ss_pred cccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CC
Q 012418 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 298 (464)
Q Consensus 221 Dal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~ 298 (464)
|++.+++. +++++++|+++.|||+|++ ||+|+ ....+|++|+|||+|+.||||||||||+|++||+ |+
T Consensus 235 DAigGRr~--se~Ts~dreiqrTLMeLln-----qmdgf---d~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpn 304 (388)
T KOG0651|consen 235 DAIGGRRF--SEGTSSDREIQRTLMELLN-----QMDGF---DTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPN 304 (388)
T ss_pred hhhccEEe--ccccchhHHHHHHHHHHHH-----hhccc---hhcccccEEEecCCccccchhhcCCccccceeccCCcc
Confidence 99999985 8999999999999999999 99999 9999999999999999999999999999999997 77
Q ss_pred HHHHHHHHHhhcCCCCCChhHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHHhchhhhhhhhhcCCCCCCCcCCCcc
Q 012418 299 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 378 (464)
Q Consensus 299 ~eeR~eIl~~~~~~~~v~~~~la~lt~gfsgadLd~~~alra~~~~~~i~~~i~~~~~e~l~~~l~~~~~~~~~~~~~~~ 378 (464)
...|..|+ .|+++.|+|+|+++ +++|.+|....+..++-. ...+ .|.|..+..
T Consensus 305 e~~r~~I~-------------------Kih~~~i~~~Geid----~eaivK~~d~f~gad~rn---~~tE-ag~Fa~~~~ 357 (388)
T KOG0651|consen 305 EQARLGIL-------------------KIHVQPIDFHGEID----DEAILKLVDGFNGADLRN---VCTE-AGMFAIPEE 357 (388)
T ss_pred hhhceeeE-------------------eecccccccccccc----HHHHHHHHhccChHHHhh---hccc-ccccccchh
Confidence 77777654 45566677777666 556667766665444211 1122 358999999
Q ss_pred CHHHHHHHhHhhHHHHhhhhhhhHHHHHhc
Q 012418 379 TLDKLLEYGRMLVQEQENVKRVQLADKYLS 408 (464)
Q Consensus 379 t~~~Lleag~~lv~Eqe~v~~~~l~~~yl~ 408 (464)
+-+.++|.+..+++||.++++++++.+|++
T Consensus 358 ~~~vl~Ed~~k~vrk~~~~kkle~~~~Y~~ 387 (388)
T KOG0651|consen 358 RDEVLHEDFMKLVRKQADAKKLELSLDYKK 387 (388)
T ss_pred hHHHhHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 999999999999999999999999999985
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-44 Score=359.21 Aligned_cols=167 Identities=23% Similarity=0.358 Sum_probs=156.5
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
.|++||+|+|||||||||||+||||||++.+.. +|+||.++++|++|+.| +.++||||||||||+
T Consensus 180 ~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA----rekaPsIIFiDEIDA 255 (406)
T COG1222 180 LGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELA----REKAPSIIFIDEIDA 255 (406)
T ss_pred cCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHH----hhcCCeEEEEechhh
Confidence 499999999999999999999999999999877 99999999999999999 999999999999999
Q ss_pred cccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHH
Q 012418 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 300 (464)
Q Consensus 223 l~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~e 300 (464)
++++|. ...+..++.|+.|+++|+. ||||+ ....+|-||++|||++.||||||||||||+.|++ |+.+
T Consensus 256 Ig~kR~--d~~t~gDrEVQRTmleLL~-----qlDGF---D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~ 325 (406)
T COG1222 256 IGAKRF--DSGTSGDREVQRTMLELLN-----QLDGF---DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEE 325 (406)
T ss_pred hhcccc--cCCCCchHHHHHHHHHHHH-----hccCC---CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHH
Confidence 999987 4566789999999999998 99999 8999999999999999999999999999999996 9999
Q ss_pred HHHHHHHhhc----CCCCCChhHHHHHhcCCChhhHHH
Q 012418 301 DRIGVCSGIF----RTDNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 301 eR~eIl~~~~----~~~~v~~~~la~lt~gfsgadLd~ 334 (464)
.|.+|++-|. ..++++++.|++.++|||||+|..
T Consensus 326 gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlka 363 (406)
T COG1222 326 GRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKA 363 (406)
T ss_pred HHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHH
Confidence 9999976554 467888999999999999999963
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-42 Score=365.34 Aligned_cols=227 Identities=22% Similarity=0.354 Sum_probs=184.5
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
..|+..|-|+|||||||||||+||||||+|.|++ +|+||+++.||++|.+| |..+||||||||||
T Consensus 539 ~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRA----R~saPCVIFFDEiD 614 (802)
T KOG0733|consen 539 ALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRA----RASAPCVIFFDEID 614 (802)
T ss_pred HhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHh----hcCCCeEEEecchh
Confidence 4699999999999999999999999999999988 99999999999999999 99999999999999
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCH
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 299 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~ 299 (464)
+++++|+ .....+..|+|||+| ++|||. +++.+|+||++||||+.||||+|||||||+.+|+ |+.
T Consensus 615 aL~p~R~-~~~s~~s~RvvNqLL---------tElDGl---~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 615 ALVPRRS-DEGSSVSSRVVNQLL---------TELDGL---EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred hcCcccC-CCCchhHHHHHHHHH---------HHhccc---ccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 9999998 455788999999999 799999 8999999999999999999999999999999996 999
Q ss_pred HHHHHHHHhhcC------CCCCChhHHHHHhc--CCChhhHHHHHHHHhhhhHHHHHHHHHHhchhhhhhhhhcCCCCCC
Q 012418 300 EDRIGVCSGIFR------TDNVPKEDIVKLVD--TFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPP 371 (464)
Q Consensus 300 eeR~eIl~~~~~------~~~v~~~~la~lt~--gfsgadLd~~~alra~~~~~~i~~~i~~~~~e~l~~~l~~~~~~~~ 371 (464)
++|.+|++.+.+ ..+++++.|++.+. ||+||||. +|.....--++++-+.++.... .+...
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa---aLvreAsi~AL~~~~~~~~~~~--------~~~~~ 750 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA---ALVREASILALRESLFEIDSSE--------DDVTV 750 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHH---HHHHHHHHHHHHHHHhhccccC--------cccce
Confidence 999999988876 45788889999887 99999996 3333333333443332221110 00000
Q ss_pred CcCCCccCHHHHHHHhHhh---HHHHhhhhhhhHHHHHh
Q 012418 372 TFEQPKMTLDKLLEYGRML---VQEQENVKRVQLADKYL 407 (464)
Q Consensus 372 ~~~~~~~t~~~Lleag~~l---v~Eqe~v~~~~l~~~yl 407 (464)
...+..+|..++-+|-..+ +.|++..+|.++.++|-
T Consensus 751 ~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 751 RSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred eeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 0112345556666665554 79999999999887764
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-41 Score=363.32 Aligned_cols=259 Identities=20% Similarity=0.323 Sum_probs=207.9
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCCh
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEP 192 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~ 192 (464)
+|+++-|-..++.+++|.+.+.....-|...|+++..|||||||||||||++|||||.|+.++ +|+|++
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqS 749 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQS 749 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcch
Confidence 345555544444455554444333344445699999999999999999999999999999887 999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCC-CCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEE
Q 012418 193 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271 (464)
Q Consensus 193 ~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~-~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VI 271 (464)
+.++|++|++| |..+||||||||||++++.|+ .++.++|.+|+|.|+|. |+||+..+ ....|+||
T Consensus 750 E~NVR~VFerA----R~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLA---------ELDgls~~-~s~~VFVi 815 (953)
T KOG0736|consen 750 EENVREVFERA----RSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLA---------ELDGLSDS-SSQDVFVI 815 (953)
T ss_pred HHHHHHHHHHh----hccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHH---------HhhcccCC-CCCceEEE
Confidence 99999999999 999999999999999999887 34678899999999994 88888443 56889999
Q ss_pred EEeCCCCCCchhhccCCcceEEEeC-C--CHHHHHHHHHhhc----CCCCCChhHHHHHhc-CCChhhHHHHHHHHhhhh
Q 012418 272 VTGNDFSTLYAPLIRDGRMEKFYWA-P--TREDRIGVCSGIF----RTDNVPKEDIVKLVD-TFPGQSIDFFGALRARVY 343 (464)
Q Consensus 272 aTTN~~~~LDpALlRpGRfD~~i~i-P--~~eeR~eIl~~~~----~~~~v~~~~la~lt~-gfsgadLd~~~alra~~~ 343 (464)
++|||||.||||||||||||+.+|+ | +.+.+..|++++. .+++++..+||+.++ .|+|||+ .+|++.+.
T Consensus 816 GATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADl---YsLCSdA~ 892 (953)
T KOG0736|consen 816 GATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADL---YSLCSDAM 892 (953)
T ss_pred ecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHH---HHHHHHHH
Confidence 9999999999999999999999997 3 6677788866554 467788889999887 7999997 48888888
Q ss_pred HHHHHHHHHHhchhhhhhhhhcCCCCCCCcCCCccCHHHHHHHhHhh---HHHHhhhhhhhHHHHH
Q 012418 344 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRML---VQEQENVKRVQLADKY 406 (464)
Q Consensus 344 ~~~i~~~i~~~~~e~l~~~l~~~~~~~~~~~~~~~t~~~Lleag~~l---v~Eqe~v~~~~l~~~y 406 (464)
-.++++-+..+....+.. .+ ..-....++.++++++.+.+ +.|||...|..+..+|
T Consensus 893 l~AikR~i~~ie~g~~~~-----~e--~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~f 951 (953)
T KOG0736|consen 893 LAAIKRTIHDIESGTISE-----EE--QESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQF 951 (953)
T ss_pred HHHHHHHHHHhhhccccc-----cc--cCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhh
Confidence 888888777765443333 11 11234578899999998877 7899998888887766
No 6
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-40 Score=350.76 Aligned_cols=164 Identities=24% Similarity=0.473 Sum_probs=152.3
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
..|+.+|+|||||||||||||++|||+|++++++ +|+|++++.||++|++| ++..||||||||||
T Consensus 462 r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kA----R~~aP~IiFfDEiD 537 (693)
T KOG0730|consen 462 RFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKA----RQVAPCIIFFDEID 537 (693)
T ss_pred HhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHH----hhcCCeEEehhhHH
Confidence 3599999999999999999999999999999988 99999999999999999 99999999999999
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCH
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 299 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~ 299 (464)
++++.|++ ...++.+|+++++| ++|||. +...+|+||++||||+.||+||+||||||+.||+ |+.
T Consensus 538 si~~~R~g-~~~~v~~RVlsqLL---------tEmDG~---e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 538 ALAGSRGG-SSSGVTDRVLSQLL---------TEMDGL---EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hHhhccCC-CccchHHHHHHHHH---------HHcccc---cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 99999984 44489999999998 599999 8889999999999999999999999999999996 999
Q ss_pred HHHHHHHHhhcC----CCCCChhHHHHHhcCCChhhHH
Q 012418 300 EDRIGVCSGIFR----TDNVPKEDIVKLVDTFPGQSID 333 (464)
Q Consensus 300 eeR~eIl~~~~~----~~~v~~~~la~lt~gfsgadLd 333 (464)
+.|.+|++.+.+ .++++.+.|++.|+||||+||.
T Consensus 605 ~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~ 642 (693)
T KOG0730|consen 605 EARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIV 642 (693)
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHH
Confidence 999999776654 4567888999999999999995
No 7
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-41 Score=349.11 Aligned_cols=249 Identities=20% Similarity=0.284 Sum_probs=190.7
Q ss_pred cccccccccccccCccCcchhhhhHHHHHHHHhhhh--CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC--------
Q 012418 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLN--LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------- 186 (464)
Q Consensus 117 ~~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~--~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------- 186 (464)
+....+.+|+++.|-..-..++- .+++-+|+.-+ ..|-+.||||||.||||||||+||||||.|.+++
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELe--EiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELE--EIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred hhhhcccccccccChHHHHHHHH--HHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 34445667788776322222221 13444455444 4699999999999999999999999999999998
Q ss_pred ---CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccC
Q 012418 187 ---GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 263 (464)
Q Consensus 187 ---~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~ 263 (464)
+++|..++.||++|..| +..+||||||||||++.++|...++. ..++.+||+| ++|||+ .
T Consensus 373 FdEm~VGvGArRVRdLF~aA----k~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLL---------vEmDGF---~ 435 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAA----KARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLL---------VEMDGF---K 435 (752)
T ss_pred hhhhhhcccHHHHHHHHHHH----HhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHH---------HHhcCc---C
Confidence 89999999999999999 99999999999999999998854443 6677777777 699999 8
Q ss_pred CCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhc----CCCCCChhHHHHHhcCCChhhHHHH--
Q 012418 264 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF----RTDNVPKEDIVKLVDTFPGQSIDFF-- 335 (464)
Q Consensus 264 ~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~----~~~~v~~~~la~lt~gfsgadLd~~-- 335 (464)
.+.+|+||++||.|+.||+||+||||||+.+.+ ||...|.+|++.++ ..++++++-||+-|.||+|+||+.+
T Consensus 436 qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 436 QNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVN 515 (752)
T ss_pred cCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHH
Confidence 888999999999999999999999999999996 89999999977665 4568899999999999999999864
Q ss_pred -HHHHhhhhHHH-----HHHHHHHhchhhhhhhhhcCCC-CCCCcCCCccCHHHHHHHhHhhHH
Q 012418 336 -GALRARVYDDE-----VRKWISEVGIERIGKRLVNSKE-GPPTFEQPKMTLDKLLEYGRMLVQ 392 (464)
Q Consensus 336 -~alra~~~~~~-----i~~~i~~~~~e~l~~~l~~~~~-~~~~~~~~~~t~~~Lleag~~lv~ 392 (464)
+||++.+-... -.+|-+ .+++-..+ +.-.......++.++||.||+++.
T Consensus 516 qAAlkAa~dga~~VtM~~LE~ak--------DrIlMG~ERks~~i~~eak~~TAyHE~GHAivA 571 (752)
T KOG0734|consen 516 QAALKAAVDGAEMVTMKHLEFAK--------DRILMGPERKSMVIDEEAKKITAYHEGGHAIVA 571 (752)
T ss_pred HHHHHHHhcCcccccHHHHhhhh--------hheeecccccccccChhhhhhhhhhccCceEEE
Confidence 45554332211 012221 22332222 122234456778999999999863
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-38 Score=333.28 Aligned_cols=212 Identities=21% Similarity=0.315 Sum_probs=168.1
Q ss_pred cccccccCccCcchhhhhHHHHHHH-HhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCC
Q 012418 123 YSLDNTLDGLYIAPAFMDKVVVHIT-KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAG 190 (464)
Q Consensus 123 ~~f~n~~~~~~i~~~~~d~~~~~i~-Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~G 190 (464)
.+|.++-|-...-.++. ..+.|+. .+.+...|+.||+|+|||||||||||+||+|||+|++++ .+.|
T Consensus 187 v~f~diGG~d~~~~el~-~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELC-ELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred cchhhccChHHHHHHHH-HHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 35566655322222222 2334433 234456799999999999999999999999999999998 8899
Q ss_pred ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCC-CCCce
Q 012418 191 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVP 269 (464)
Q Consensus 191 e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~-~~~V~ 269 (464)
+++++||++|+.| +...|||+||||||++.++|. ..+.+...|+|.|+| +.||+...... ...|+
T Consensus 266 ESEkkiRelF~~A----~~~aPcivFiDeIDAI~pkRe-~aqreMErRiVaQLl---------t~mD~l~~~~~~g~~Vl 331 (802)
T KOG0733|consen 266 ESEKKIRELFDQA----KSNAPCIVFIDEIDAITPKRE-EAQREMERRIVAQLL---------TSMDELSNEKTKGDPVL 331 (802)
T ss_pred ccHHHHHHHHHHH----hccCCeEEEeecccccccchh-hHHHHHHHHHHHHHH---------HhhhcccccccCCCCeE
Confidence 9999999999999 999999999999999999998 466677788888877 35555543332 46799
Q ss_pred EEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcC----CCCCChhHHHHHhcCCChhhHHHHHHHHhhhh
Q 012418 270 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR----TDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 343 (464)
Q Consensus 270 VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~----~~~v~~~~la~lt~gfsgadLd~~~alra~~~ 343 (464)
||+|||||+.|||||.|+||||+.|.+ |++.+|.+|++.+.+ ..++++..||++|.||.||||. ||+..+.
T Consensus 332 VIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~---AL~~~Aa 408 (802)
T KOG0733|consen 332 VIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLM---ALCREAA 408 (802)
T ss_pred EEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHH---HHHHHHH
Confidence 999999999999999999999999996 999999999776654 4577888999999999999997 4454444
Q ss_pred HHHHHHHHH
Q 012418 344 DDEVRKWIS 352 (464)
Q Consensus 344 ~~~i~~~i~ 352 (464)
.-+|++.+.
T Consensus 409 ~vAikR~ld 417 (802)
T KOG0733|consen 409 FVAIKRILD 417 (802)
T ss_pred HHHHHHHhh
Confidence 455555444
No 9
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-37 Score=326.60 Aligned_cols=186 Identities=20% Similarity=0.362 Sum_probs=170.3
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccccc
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal 223 (464)
+++.+.|||||||||||||+||.++|..++++ +|+|.++..+|++|.+| +..+||||||||+|++
T Consensus 697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA----~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERA----QSAKPCILFFDEFDSI 772 (952)
T ss_pred CcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHh----hccCCeEEEecccccc
Confidence 78889999999999999999999999999887 99999999999999999 9999999999999999
Q ss_pred ccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHH
Q 012418 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 301 (464)
Q Consensus 224 ~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~ee 301 (464)
+++|+ .+..++++|+|||+| +||||. +...+|.|+++|.||+.||||||||||+|+.++. |+..+
T Consensus 773 APkRG-hDsTGVTDRVVNQlL---------TelDG~---Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 773 APKRG-HDSTGVTDRVVNQLL---------TELDGA---EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CcccC-CCCCCchHHHHHHHH---------Hhhccc---cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 99998 577899999999999 699999 8899999999999999999999999999999994 99999
Q ss_pred HHHHHHhh----cCCCCCChhHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHHhchhhhh
Q 012418 302 RIGVCSGI----FRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 360 (464)
Q Consensus 302 R~eIl~~~----~~~~~v~~~~la~lt~gfsgadLd~~~alra~~~~~~i~~~i~~~~~e~l~ 360 (464)
|.+|++.+ ..+++++++.++..|+||+||||. +|...++-.++++|+.+.+.+...
T Consensus 840 Rl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq---~ll~~A~l~avh~~l~~~~~~~~~ 899 (952)
T KOG0735|consen 840 RLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ---SLLYNAQLAAVHEILKREDEEGVV 899 (952)
T ss_pred HHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH---HHHHHHHHHHHHHHHHhcCccccC
Confidence 99997654 457789999999999999999996 566677778899999888755443
No 10
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-36 Score=329.47 Aligned_cols=252 Identities=20% Similarity=0.247 Sum_probs=182.1
Q ss_pred cccccccCccCcchhhhhHHHHHHHHhhhh--CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCC
Q 012418 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLN--LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189 (464)
Q Consensus 123 ~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~--~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~ 189 (464)
.+|.++.|-.++..++++ +++.+||..+ ..|+++|+|+||+||||||||+||||+|.|.|+| ++.
T Consensus 308 V~FkDVAG~deAK~El~E--~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELME--FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV 385 (774)
T ss_pred CccccccCcHHHHHHHHH--HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence 456777776566666654 4566666554 5799999999999999999999999999999999 677
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 012418 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269 (464)
Q Consensus 190 Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~ 269 (464)
|....++|++|..| |.++||||||||||++...|++. -....++...++|.+++ ++|||+ .....|+
T Consensus 386 g~~asrvr~lf~~a----r~~aP~iifideida~~~~r~G~-~~~~~~~e~e~tlnQll-----~emDgf---~~~~~vi 452 (774)
T KOG0731|consen 386 GVGASRVRDLFPLA----RKNAPSIIFIDEIDAVGRKRGGK-GTGGGQDEREQTLNQLL-----VEMDGF---ETSKGVI 452 (774)
T ss_pred ccchHHHHHHHHHh----hccCCeEEEeccccccccccccc-ccCCCChHHHHHHHHHH-----HHhcCC---cCCCcEE
Confidence 77789999999999 99999999999999999888521 11122233344443333 699999 7778899
Q ss_pred EEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCC-----ChhHHHHHhcCCChhhHHHHH---HHH
Q 012418 270 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV-----PKEDIVKLVDTFPGQSIDFFG---ALR 339 (464)
Q Consensus 270 VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v-----~~~~la~lt~gfsgadLd~~~---alr 339 (464)
||++||+++.||+||+||||||+.+.+ |+..+|.+|++.+..+..+ ++..|+.+|.||+|+||.++. |+.
T Consensus 453 ~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~ 532 (774)
T KOG0731|consen 453 VLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALL 532 (774)
T ss_pred EEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHH
Confidence 999999999999999999999999996 9999999998887765444 455799999999999998752 221
Q ss_pred hhhhHHHHHHHHHHhchhhhhhhhhcCCCC-CCCcCCCccCHHHHHHHhHhhHH
Q 012418 340 ARVYDDEVRKWISEVGIERIGKRLVNSKEG-PPTFEQPKMTLDKLLEYGRMLVQ 392 (464)
Q Consensus 340 a~~~~~~i~~~i~~~~~e~l~~~l~~~~~~-~~~~~~~~~t~~~Lleag~~lv~ 392 (464)
+.- .-.++|.....+...++++.+-+. ...........-+.|++||+++.
T Consensus 533 a~r---~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g 583 (774)
T KOG0731|consen 533 AAR---KGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVG 583 (774)
T ss_pred HHH---hccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhh
Confidence 100 001111111222222222222121 22223345556788899998865
No 11
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-35 Score=316.97 Aligned_cols=252 Identities=22% Similarity=0.280 Sum_probs=192.2
Q ss_pred cccccccCccCcchhhhhHHHHHHHHhhhh--CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCC
Q 012418 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLN--LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189 (464)
Q Consensus 123 ~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~--~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~ 189 (464)
.+|.++.|.....+++.+ +++-+|+.-+ ..|.+.|+|+||+||||||||+||+|+|.|.++| +++
T Consensus 147 v~F~DVAG~dEakeel~E--iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 147 VTFADVAGVDEAKEELSE--LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred cChhhhcCcHHHHHHHHH--HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence 356666664333333332 2333443222 3477999999999999999999999999999998 899
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 012418 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269 (464)
Q Consensus 190 Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~ 269 (464)
|.+.+.+|++|.+| ++++||||||||||++...|+.. .+..+....|+|.+++ |+|||+ ..+..|+
T Consensus 225 GvGAsRVRdLF~qA----kk~aP~IIFIDEiDAvGr~Rg~g--~GggnderEQTLNQlL-----vEmDGF---~~~~gvi 290 (596)
T COG0465 225 GVGASRVRDLFEQA----KKNAPCIIFIDEIDAVGRQRGAG--LGGGNDEREQTLNQLL-----VEMDGF---GGNEGVI 290 (596)
T ss_pred CCCcHHHHHHHHHh----hccCCCeEEEehhhhcccccCCC--CCCCchHHHHHHHHHH-----hhhccC---CCCCceE
Confidence 99999999999999 99999999999999998888633 3444556666665555 599999 7788999
Q ss_pred EEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHHHH---HHHh
Q 012418 270 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFG---ALRA 340 (464)
Q Consensus 270 VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~~~---alra 340 (464)
||++||||+.|||||+||||||+.+.+ |+...|.+|++.|.+. ..+++..|++.|.||+|++|..+. ||-+
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~a 370 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLA 370 (596)
T ss_pred EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHH
Confidence 999999999999999999999999996 9999999998766543 467777999999999999998652 2111
Q ss_pred hhhHHHHHHHHHHhchhhhhhhhhcCCCCC-CCcCCCccCHHHHHHHhHhhHHH
Q 012418 341 RVYDDEVRKWISEVGIERIGKRLVNSKEGP-PTFEQPKMTLDKLLEYGRMLVQE 393 (464)
Q Consensus 341 ~~~~~~i~~~i~~~~~e~l~~~l~~~~~~~-~~~~~~~~t~~~Lleag~~lv~E 393 (464)
. ..=+.|+...+.+.-..+++...++. ..+.+......++||+||.++..
T Consensus 371 a---r~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~ 421 (596)
T COG0465 371 A---RRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGL 421 (596)
T ss_pred H---HhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHH
Confidence 0 11123444445555455566564443 35788888899999999999754
No 12
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-34 Score=294.40 Aligned_cols=188 Identities=23% Similarity=0.321 Sum_probs=157.9
Q ss_pred CCCCCC-cEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 154 PNVKVP-LILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 154 ~gi~~p-~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
.|++.| +|||++||||||||+||||||.|+|.. +|-|++++++|-+|+.| +..+|++|||||||
T Consensus 239 ~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemA----RfyAPStIFiDEID 314 (491)
T KOG0738|consen 239 KGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMA----RFYAPSTIFIDEID 314 (491)
T ss_pred hhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHH----HHhCCceeehhhHH
Confidence 377666 999999999999999999999999865 99999999999999999 99999999999999
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCC-CCceEEEEeCCCCCCchhhccCCcceEEEeC--CC
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 298 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~-~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~ 298 (464)
+++++|++.++.+...|..+.+| |||||.-...+. ..|+|+++||.|++||+||+| ||++.|++ |+
T Consensus 315 slcs~RG~s~EHEaSRRvKsELL---------vQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~ 383 (491)
T KOG0738|consen 315 SLCSQRGGSSEHEASRRVKSELL---------VQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPD 383 (491)
T ss_pred HHHhcCCCccchhHHHHHHHHHH---------HHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCC
Confidence 99999997778888888888888 689988443333 558999999999999999999 99999996 99
Q ss_pred HHHHHHHHHhhcC----CCCCChhHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHHhchhhh
Q 012418 299 REDRIGVCSGIFR----TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI 359 (464)
Q Consensus 299 ~eeR~eIl~~~~~----~~~v~~~~la~lt~gfsgadLd~~~alra~~~~~~i~~~i~~~~~e~l 359 (464)
.+.|..+++..+. .+.++.++|++.++||||+||..+ |..+..-.+|+.+....-+.+
T Consensus 384 ~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nv---CreAsm~~mRR~i~g~~~~ei 445 (491)
T KOG0738|consen 384 AEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNV---CREASMMAMRRKIAGLTPREI 445 (491)
T ss_pred HHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHH---HHHHHHHHHHHHHhcCCcHHh
Confidence 9999888766554 567888899999999999999754 333333446666655544443
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-34 Score=279.50 Aligned_cols=168 Identities=26% Similarity=0.378 Sum_probs=151.4
Q ss_pred hCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccc
Q 012418 152 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 220 (464)
Q Consensus 152 ~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEI 220 (464)
+.-|+.||+|+|||||||||||+||+|+|+..... +|.|+..+++|++|+.| +.++|+|||||||
T Consensus 182 ~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrla----kenapsiifidei 257 (408)
T KOG0727|consen 182 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA----KENAPSIIFIDEI 257 (408)
T ss_pred HHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHH----hccCCcEEEeehh
Confidence 45599999999999999999999999999986544 89999999999999999 9999999999999
Q ss_pred cccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CC
Q 012418 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 298 (464)
Q Consensus 221 Dal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~ 298 (464)
|+++.+|. +..+..++.|+..|++++. ||||+ ....+|-||++||+.++||||||||||+|+.|++ |+
T Consensus 258 daiatkrf--daqtgadrevqril~elln-----qmdgf---dq~~nvkvimatnradtldpallrpgrldrkiefplpd 327 (408)
T KOG0727|consen 258 DAIATKRF--DAQTGADREVQRILIELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred hhHhhhhc--cccccccHHHHHHHHHHHH-----hccCc---CcccceEEEEecCcccccCHhhcCCccccccccCCCCc
Confidence 99998877 3456778999999999998 99999 8889999999999999999999999999999996 77
Q ss_pred HHHHHHHH----HhhcCCCCCChhHHHHHhcCCChhhHH
Q 012418 299 REDRIGVC----SGIFRTDNVPKEDIVKLVDTFPGQSID 333 (464)
Q Consensus 299 ~eeR~eIl----~~~~~~~~v~~~~la~lt~gfsgadLd 333 (464)
+.+++-++ ..+...+.++.+++...-+..||++|.
T Consensus 328 rrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~ 366 (408)
T KOG0727|consen 328 RRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADIN 366 (408)
T ss_pred hhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHH
Confidence 77776554 455667888899999999999999996
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=275.79 Aligned_cols=167 Identities=25% Similarity=0.377 Sum_probs=151.6
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
..|+++|+|+|+|||||||||++|+|+|.+.+.. +++|+.++++|+.|..| +..+|+||||||+|
T Consensus 199 ~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLA----KEkaP~IIFIDElD 274 (424)
T KOG0652|consen 199 NLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALA----KEKAPTIIFIDELD 274 (424)
T ss_pred hcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHh----hccCCeEEEEechh
Confidence 4699999999999999999999999999997654 89999999999999988 99999999999999
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCH
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 299 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~ 299 (464)
++..+|.+ .....++.|+.+.++++. |+||+ ....+|-||++|||.+-|||||+|.||+|+.|++ |+.
T Consensus 275 AIGtKRfD--Sek~GDREVQRTMLELLN-----QLDGF---ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne 344 (424)
T KOG0652|consen 275 AIGTKRFD--SEKAGDREVQRTMLELLN-----QLDGF---SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 344 (424)
T ss_pred hhcccccc--ccccccHHHHHHHHHHHH-----hhcCC---CCccceEEEeecccccccCHHHhhcccccccccCCCCCh
Confidence 99988873 334678999999999999 99999 8888999999999999999999999999999997 999
Q ss_pred HHHHHHHHhhcC----CCCCChhHHHHHhcCCChhhHH
Q 012418 300 EDRIGVCSGIFR----TDNVPKEDIVKLVDTFPGQSID 333 (464)
Q Consensus 300 eeR~eIl~~~~~----~~~v~~~~la~lt~gfsgadLd 333 (464)
+.|..|++-+.+ .++++++++++-|++|.|+...
T Consensus 345 ~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcK 382 (424)
T KOG0652|consen 345 EARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCK 382 (424)
T ss_pred HHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhe
Confidence 999999766554 4677888999999999998775
No 15
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-33 Score=294.52 Aligned_cols=164 Identities=24% Similarity=0.417 Sum_probs=147.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccccc
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal 223 (464)
++++|+|+|||||||||||+||+++|++++.+ +|+|+++++|+++|..| ++.+||||||||+|++
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A----~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKA----RKLAPSIIFIDEIDSL 347 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHH----HcCCCcEEEEEchhhh
Confidence 78999999999999999999999999999887 89999999999999999 8999999999999999
Q ss_pred ccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHH
Q 012418 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 301 (464)
Q Consensus 224 ~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~ee 301 (464)
+..|+. ...+...++++++| ++|+|. +...+|+||+|||+|+.||+|++||||||+.+++ |+.++
T Consensus 348 ~~~r~~-~~~~~~~r~~~~lL---------~~~d~~---e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 348 ASGRGP-SEDGSGRRVVGQLL---------TELDGI---EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred hccCCC-CCchHHHHHHHHHH---------HHhcCC---CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 998873 33344468888888 477777 7778899999999999999999999999999996 99999
Q ss_pred HHHHHHhhcCC------CCCChhHHHHHhcCCChhhHHHH
Q 012418 302 RIGVCSGIFRT------DNVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 302 R~eIl~~~~~~------~~v~~~~la~lt~gfsgadLd~~ 335 (464)
|.+|++.++.. .+++.+.+++.++||+|+||..+
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i 454 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAAL 454 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHH
Confidence 99999888873 35677799999999999999754
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-33 Score=274.16 Aligned_cols=168 Identities=22% Similarity=0.368 Sum_probs=152.5
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
..|+++|+|++|||+||||||+||+|||++.... +|.|+..+++|++|+-| ..++|+|+||||||
T Consensus 213 emGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA----~e~apSIvFiDEId 288 (440)
T KOG0726|consen 213 EMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EEHAPSIVFIDEID 288 (440)
T ss_pred HcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHH----HhcCCceEEeehhh
Confidence 4599999999999999999999999999997655 99999999999999999 99999999999999
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCH
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 299 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~ 299 (464)
++..+|. ...+...|.++++++++++ |+||+ ..+..|-||++||+.+.|||||+||||+|+.|++ |+.
T Consensus 289 AiGtKRy--ds~SggerEiQrtmLELLN-----QldGF---dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe 358 (440)
T KOG0726|consen 289 AIGTKRY--DSNSGGEREIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 358 (440)
T ss_pred hhccccc--cCCCccHHHHHHHHHHHHH-----hccCc---cccCCeEEEEecccccccCHhhcCCCccccccccCCCch
Confidence 9999887 3445567899999999999 99999 8899999999999999999999999999999996 899
Q ss_pred HHHHHHHH----hhcCCCCCChhHHHHHhcCCChhhHHH
Q 012418 300 EDRIGVCS----GIFRTDNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 300 eeR~eIl~----~~~~~~~v~~~~la~lt~gfsgadLd~ 334 (464)
..+..|+. .+...++++++++...-+.||||||..
T Consensus 359 ~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkA 397 (440)
T KOG0726|consen 359 KTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKA 397 (440)
T ss_pred hhhceeEEEeecccchhccccHHHHhhcccccccccHHH
Confidence 99999953 455678899999988889999999974
No 17
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=3.8e-32 Score=290.23 Aligned_cols=275 Identities=16% Similarity=0.191 Sum_probs=191.5
Q ss_pred ccccccccCccCcchhhhhHHHHHHH-HhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC--------------
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHIT-KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------- 186 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~-Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------------- 186 (464)
..+|+++.|-......+.+.+..... +..+...|+++|+|+|||||||||||++|+++|++++.+
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 34556765543233333333322211 222335689999999999999999999999999997532
Q ss_pred -------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCc
Q 012418 187 -------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 259 (464)
Q Consensus 187 -------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~ 259 (464)
+|.|+.++.++.+|..|.+.+..++||||||||+|+++..|+........+++++++|. +|||.
T Consensus 258 ~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~---------~LDgl 328 (512)
T TIGR03689 258 KGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS---------ELDGV 328 (512)
T ss_pred cchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH---------Hhccc
Confidence 68899999999999999776667789999999999999877633333444555666552 56666
Q ss_pred cccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCChhHHHHHhcCCChhhHHHHHH
Q 012418 260 YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 337 (464)
Q Consensus 260 ~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~~~~la~lt~gfsgadLd~~~a 337 (464)
....+|+||+|||+++.|||||+||||||+.|++ |+.++|.+|++.++... ++.+.....+.|++++++..+
T Consensus 329 ---~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~l~~~~g~~~a~~~al-- 402 (512)
T TIGR03689 329 ---ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDADLAEFDGDREATAAAL-- 402 (512)
T ss_pred ---ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHHHHHhcCCCHHHHHHH--
Confidence 5557899999999999999999999999999996 99999999999887653 333333445789999988643
Q ss_pred HHhhhhHHHH-----HHHH--------------HHhchhhhhhhhhcCCCC-----CCCcCCCccCHHHHHHHhHhhHHH
Q 012418 338 LRARVYDDEV-----RKWI--------------SEVGIERIGKRLVNSKEG-----PPTFEQPKMTLDKLLEYGRMLVQE 393 (464)
Q Consensus 338 lra~~~~~~i-----~~~i--------------~~~~~e~l~~~l~~~~~~-----~~~~~~~~~t~~~Lleag~~lv~E 393 (464)
..++.+... +.|+ .+.-.+.+.+.++.+.+. ...-....+++++|+.|......|
T Consensus 403 -~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~ 481 (512)
T TIGR03689 403 -IQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRE 481 (512)
T ss_pred -HHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcc
Confidence 222222111 1111 111112222222222110 001123589999999999999999
Q ss_pred HhhhhhhhHHHHHhchhcC
Q 012418 394 QENVKRVQLADKYLSEAAL 412 (464)
Q Consensus 394 qe~v~~~~l~~~yl~~~~l 412 (464)
++.++....+++|.+.++.
T Consensus 482 ~~~~~~~~~~~~w~~~~~~ 500 (512)
T TIGR03689 482 SEDLPNTTNPDDWARISGK 500 (512)
T ss_pred cccCCCCCCHHHHhhhhCC
Confidence 9999999999999998543
No 18
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.6e-32 Score=301.27 Aligned_cols=229 Identities=23% Similarity=0.380 Sum_probs=175.7
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
..|+++|+|+|||||||||||++|+++|++++.+ +|+|++++.++++|..| +...||||||||||
T Consensus 481 ~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A----~~~~p~iifiDEid 556 (733)
T TIGR01243 481 KMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAPAIIFFDEID 556 (733)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHH----HhcCCEEEEEEChh
Confidence 4589999999999999999999999999999987 79999999999999999 89999999999999
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCH
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 299 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~ 299 (464)
++++.++......+.++.++++|. +|||. ....+|+||+|||+++.||+|++||||||+.+++ |+.
T Consensus 557 ~l~~~r~~~~~~~~~~~~~~~lL~---------~ldg~---~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 557 AIAPARGARFDTSVTDRIVNQLLT---------EMDGI---QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred hhhccCCCCCCccHHHHHHHHHHH---------Hhhcc---cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 999887644444566778887773 66676 5667899999999999999999999999999996 999
Q ss_pred HHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHHhchhhhhhhhhcCCCCCCCcCC
Q 012418 300 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQ 375 (464)
Q Consensus 300 eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~~~alra~~~~~~i~~~i~~~~~e~l~~~l~~~~~~~~~~~~ 375 (464)
++|.+|++.+... .+++.+.|++.++||+|+||.. ++..+...++++.+.....+.+.. ... -....
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~---~~~~A~~~a~~~~~~~~~~~~~~~----~~~--~~~~~ 695 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEA---VCREAAMAALRESIGSPAKEKLEV----GEE--EFLKD 695 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHhhhccchhhhc----ccc--ccccc
Confidence 9999998766553 4567789999999999999973 344444445555444322121211 000 00123
Q ss_pred CccCHHHHHHHhHhh---HHHHhhhhhhhHHHHH
Q 012418 376 PKMTLDKLLEYGRML---VQEQENVKRVQLADKY 406 (464)
Q Consensus 376 ~~~t~~~Lleag~~l---v~Eqe~v~~~~l~~~y 406 (464)
..++.+++.++...+ +.+++...+.++.++|
T Consensus 696 ~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~ 729 (733)
T TIGR01243 696 LKVEMRHFLEALKKVKPSVSKEDMLRYERLAKEL 729 (733)
T ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 468888888876543 4555555555555554
No 19
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.2e-31 Score=285.96 Aligned_cols=163 Identities=21% Similarity=0.350 Sum_probs=138.9
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
.|+++|+|||||||||||||++|++||++++++ +++|+++++++++|..| +..+||||||||||+
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A----~~~~P~IL~IDEID~ 329 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIA----EALSPCILWIDEIDK 329 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHH----HhcCCcEEEehhhhh
Confidence 489999999999999999999999999999987 78999999999999988 888999999999999
Q ss_pred cccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHH
Q 012418 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 300 (464)
Q Consensus 223 l~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~e 300 (464)
++..+......+..++++..+| ..++ ....+|+||+|||+++.||++++|+||||+.+++ |+.+
T Consensus 330 ~~~~~~~~~d~~~~~rvl~~lL-~~l~-------------~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 330 AFSNSESKGDSGTTNRVLATFI-TWLS-------------EKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hhccccCCCCchHHHHHHHHHH-HHHh-------------cCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 9875443334455566666655 2333 3356799999999999999999999999999996 9999
Q ss_pred HHHHHHHhhcCCC------CCChhHHHHHhcCCChhhHHH
Q 012418 301 DRIGVCSGIFRTD------NVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 301 eR~eIl~~~~~~~------~v~~~~la~lt~gfsgadLd~ 334 (464)
+|.+|++.++.+. +.+.+.|++.|+||+|+||..
T Consensus 396 eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~ 435 (489)
T CHL00195 396 EREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQ 435 (489)
T ss_pred HHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHH
Confidence 9999998777542 456789999999999999963
No 20
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.4e-32 Score=268.97 Aligned_cols=166 Identities=22% Similarity=0.358 Sum_probs=148.6
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
.|+.+|+|+|||||||||||++|+|+|+..+.- +|+|+.++++|++|+.| +..+-|||||||||+
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~ma----rtkkaciiffdeida 281 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA----RTKKACIIFFDEIDA 281 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHh----cccceEEEEeecccc
Confidence 599999999999999999999999999997654 89999999999999999 988999999999999
Q ss_pred cccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHH
Q 012418 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 300 (464)
Q Consensus 223 l~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~e 300 (464)
+.+.|.+ .+...+..|+.+.++++. |+||+ ..+.++-|+++||+|+.|||||+||||+|+.+++ |+.+
T Consensus 282 iggarfd--dg~ggdnevqrtmleli~-----qldgf---dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdle 351 (435)
T KOG0729|consen 282 IGGARFD--DGAGGDNEVQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLE 351 (435)
T ss_pred ccCcccc--CCCCCcHHHHHHHHHHHH-----hccCC---CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCccc
Confidence 9887763 233445678889999998 99999 8999999999999999999999999999999995 9999
Q ss_pred HHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHH
Q 012418 301 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSID 333 (464)
Q Consensus 301 eR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd 333 (464)
.|..|++-+.+. .++-++.|++++..-+|++|.
T Consensus 352 grt~i~kihaksmsverdir~ellarlcpnstgaeir 388 (435)
T KOG0729|consen 352 GRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIR 388 (435)
T ss_pred ccceeEEEeccccccccchhHHHHHhhCCCCcchHHH
Confidence 999997665554 456677999999999999985
No 21
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-31 Score=259.44 Aligned_cols=167 Identities=19% Similarity=0.321 Sum_probs=151.1
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
..|+..|+|+|||||||||||+||+++|....+. +|+|+..+++|++|-.| +.++|+|||+||||
T Consensus 175 aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvma----rehapsiifmdeid 250 (404)
T KOG0728|consen 175 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEID 250 (404)
T ss_pred hcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHH----HhcCCceEeeeccc
Confidence 3599999999999999999999999999997655 89999999999999999 99999999999999
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCH
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 299 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~ 299 (464)
++...|.. .++..+..|+.+.++++. |+||+ +...++-||++|||.+-||||||||||+|+.|++ |+.
T Consensus 251 sigs~r~e--~~~ggdsevqrtmlelln-----qldgf---eatknikvimatnridild~allrpgridrkiefp~p~e 320 (404)
T KOG0728|consen 251 SIGSSRVE--SGSGGDSEVQRTMLELLN-----QLDGF---EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 320 (404)
T ss_pred cccccccc--CCCCccHHHHHHHHHHHH-----hcccc---ccccceEEEEeccccccccHhhcCCCcccccccCCCCCH
Confidence 99888763 333467889999999998 99999 8889999999999999999999999999999997 899
Q ss_pred HHHHHHHHhhcC----CCCCChhHHHHHhcCCChhhHH
Q 012418 300 EDRIGVCSGIFR----TDNVPKEDIVKLVDTFPGQSID 333 (464)
Q Consensus 300 eeR~eIl~~~~~----~~~v~~~~la~lt~gfsgadLd 333 (464)
+.|.+|++-+.+ ..+++...|++...|.||+++.
T Consensus 321 ~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk 358 (404)
T KOG0728|consen 321 EARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVK 358 (404)
T ss_pred HHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhh
Confidence 999999876655 4577888999999999999986
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=5.3e-31 Score=274.87 Aligned_cols=198 Identities=20% Similarity=0.293 Sum_probs=153.4
Q ss_pred cccccccCccCcchhhhhHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCC
Q 012418 123 YSLDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAG 190 (464)
Q Consensus 123 ~~f~n~~~~~~i~~~~~d~~~~~i~K-n~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~G 190 (464)
.+|+++.|-.....++.+.+...+.. ++....|+.+|+|+|||||||||||++|+++|++++.+ ++.|
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~g 221 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLG 221 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcc
Confidence 34566555433333333222222221 23345699999999999999999999999999999876 6889
Q ss_pred ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceE
Q 012418 191 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270 (464)
Q Consensus 191 e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~V 270 (464)
+.++.++++|..| +..+||||||||||+++..+.+. . +..++.+...+++++. +++|. ....+|.|
T Consensus 222 e~~~~lr~lf~~A----~~~~P~ILfIDEID~i~~~r~~~-~-~~~d~~~~r~l~~LL~-----~ld~~---~~~~~v~V 287 (398)
T PTZ00454 222 EGPRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDA-Q-TGADREVQRILLELLN-----QMDGF---DQTTNVKV 287 (398)
T ss_pred hhHHHHHHHHHHH----HhcCCeEEEEECHhhhccccccc-c-CCccHHHHHHHHHHHH-----Hhhcc---CCCCCEEE
Confidence 9999999999988 88999999999999998776421 1 1223445566666666 67776 55568999
Q ss_pred EEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 271 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 271 IaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
|+|||+++.|||+++||||||+.|++ |+.++|.+|++.++.. .+++.+.+++.++||+|+||..
T Consensus 288 I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~ 357 (398)
T PTZ00454 288 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAA 357 (398)
T ss_pred EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999996 9999999998877654 3566779999999999999863
No 23
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-31 Score=279.20 Aligned_cols=193 Identities=18% Similarity=0.312 Sum_probs=161.8
Q ss_pred cccccccc-CccCcchhhhhHHHHHHHHhhh----------hCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----
Q 012418 122 QYSLDNTL-DGLYIAPAFMDKVVVHITKNFL----------NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN---- 186 (464)
Q Consensus 122 ~~~f~n~~-~~~~i~~~~~d~~~~~i~Kn~l----------~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~---- 186 (464)
.|+|+.+- |+ +|+...+|.+.-. ...|++..||||||||||||||++||-|-+-|+..
T Consensus 215 df~Fe~mGIGG-------Ld~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKI 287 (744)
T KOG0741|consen 215 DFNFESMGIGG-------LDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKI 287 (744)
T ss_pred CCChhhccccc-------chHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcc
Confidence 56666653 33 3444455555433 24599999999999999999999999999999875
Q ss_pred --------CCCCChHHHHHHHHHHHHHHHH----hCCcEEEEeccccccccCCCCC-CccchhhHHHHHHHHhhhcCCCc
Q 012418 187 --------GNAGEPAKLIRQRYREAADIIK----KGKMCCLFINDLDAGAGRMGGT-TQYTVNNQMVNATLMNIADNPTN 253 (464)
Q Consensus 187 --------~~~Ge~~k~Ir~~F~~A~~~~~----~~~P~ILfIDEIDal~~~r~~~-~~~~~~~~~v~~~L~~llD~~~~ 253 (464)
+|+|+++.+||.+|..|-+.-| ...--||+|||||+++..|+.. +..++.+++|||+|
T Consensus 288 VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLL--------- 358 (744)
T KOG0741|consen 288 VNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLL--------- 358 (744)
T ss_pred cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHH---------
Confidence 9999999999999999976666 2334699999999999888743 34679999999999
Q ss_pred ccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhh--------cCCCCCChhHHHHH
Q 012418 254 VQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGI--------FRTDNVPKEDIVKL 323 (464)
Q Consensus 254 v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~--------~~~~~v~~~~la~l 323 (464)
..|||. +...+|.||+.|||.+.||+||||||||+...++ |+++.|++|++-+ +...+++.++||.+
T Consensus 359 sKmDGV---eqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~l 435 (744)
T KOG0741|consen 359 SKMDGV---EQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAAL 435 (744)
T ss_pred HhcccH---HhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHH
Confidence 478999 8899999999999999999999999999999996 9999999995533 34678999999999
Q ss_pred hcCCChhhHH
Q 012418 324 VDTFPGQSID 333 (464)
Q Consensus 324 t~gfsgadLd 333 (464)
|..||||+|+
T Consensus 436 TKNfSGAEle 445 (744)
T KOG0741|consen 436 TKNFSGAELE 445 (744)
T ss_pred hcCCchhHHH
Confidence 9999999997
No 24
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=7.2e-31 Score=280.47 Aligned_cols=197 Identities=21% Similarity=0.301 Sum_probs=153.4
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhh--hhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------C
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNF--LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------G 187 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~--l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~ 187 (464)
...+|+++.|...+..++.+. + ...++. +...|.++|+|+|||||||||||++|+++|++++++ .
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~-~-~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEI-V-DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHH-H-HHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 355678888765554444321 1 122322 234588999999999999999999999999999887 5
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCC--ccchhhHHHHHHHHhhhcCCCcccCCCccccCCC
Q 012418 188 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265 (464)
Q Consensus 188 ~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~--~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~ 265 (464)
+.|+.++.++++|..| +..+||||||||||++...+.... ......+.++++| . +||+. ...
T Consensus 128 ~~g~~~~~l~~~f~~a----~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL----~-----~~d~~---~~~ 191 (495)
T TIGR01241 128 FVGVGASRVRDLFEQA----KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLL----V-----EMDGF---GTN 191 (495)
T ss_pred HhcccHHHHHHHHHHH----HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHH----h-----hhccc---cCC
Confidence 6788888999999998 888999999999999987765211 1122334555554 2 67776 556
Q ss_pred CCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCC----CCChhHHHHHhcCCChhhHHHH
Q 012418 266 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 266 ~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~----~v~~~~la~lt~gfsgadLd~~ 335 (464)
.+|+||+|||+++.|||+|+||||||+.+++ |+.++|.+|++.++... +++.+.+++.+.||+|+||..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHH
Confidence 7799999999999999999999999999996 99999999998877654 4557799999999999999754
No 25
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6e-31 Score=260.64 Aligned_cols=228 Identities=19% Similarity=0.314 Sum_probs=171.9
Q ss_pred CCCCC-cEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 155 NVKVP-LILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 155 gi~~p-~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
|-+.| +|||||||||||||+||+|||.|.+-. +|.||++++++++|+.| |+++|+||||||||+
T Consensus 161 GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemA----Re~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 161 GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMA----RENKPSIIFIDEIDS 236 (439)
T ss_pred CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHH----HhcCCcEEEeehhhh
Confidence 44444 999999999999999999999998844 99999999999999999 999999999999999
Q ss_pred cccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHH
Q 012418 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 300 (464)
Q Consensus 223 l~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~e 300 (464)
+++.|+ ..+.+..+|+...+| |||.|. .....+|.|+++||-|+.||.|+.| ||++.||+ |...
T Consensus 237 lcg~r~-enEseasRRIKTEfL---------VQMqGV--G~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~ 302 (439)
T KOG0739|consen 237 LCGSRS-ENESEASRRIKTEFL---------VQMQGV--GNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAH 302 (439)
T ss_pred hccCCC-CCchHHHHHHHHHHH---------Hhhhcc--ccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHH
Confidence 999988 456677888888888 789887 2456789999999999999999999 99999997 8999
Q ss_pred HHHHHHHhhcCCCC-----CChhHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHH---------Hh-c---hhhhhhh
Q 012418 301 DRIGVCSGIFRTDN-----VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS---------EV-G---IERIGKR 362 (464)
Q Consensus 301 eR~eIl~~~~~~~~-----v~~~~la~lt~gfsgadLd~~~alra~~~~~~i~~~i~---------~~-~---~e~l~~~ 362 (464)
.|..+++-++.+.. .+...|++.|+||||+||..+ +.+++-+=++ ++ + ..++...
T Consensus 303 AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisiv-------VrDalmePvRkvqsAthFk~v~~~s~~~~~~~l 375 (439)
T KOG0739|consen 303 ARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIV-------VRDALMEPVRKVQSATHFKKVSGPSNPSEVDDL 375 (439)
T ss_pred HhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEE-------ehhhhhhhHHHhhhhhhhhccCCCCChhhhccc
Confidence 99999988876543 234599999999999999532 2222211111 11 1 1111111
Q ss_pred hhcCCCCC-------------CCcCCCccCHHHHHHHhHh---hHHHHhhhhhhhHHHHHh
Q 012418 363 LVNSKEGP-------------PTFEQPKMTLDKLLEYGRM---LVQEQENVKRVQLADKYL 407 (464)
Q Consensus 363 l~~~~~~~-------------~~~~~~~~t~~~Lleag~~---lv~Eqe~v~~~~l~~~yl 407 (464)
+.--..+. -..-+|.+|+.+++.+... -|+|.+..+..++.++|=
T Consensus 376 ltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 376 LTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred cCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 11111111 1234577888888877554 477778777777766653
No 26
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=2.1e-30 Score=269.63 Aligned_cols=170 Identities=24% Similarity=0.389 Sum_probs=144.7
Q ss_pred hCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccc
Q 012418 152 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 220 (464)
Q Consensus 152 ~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEI 220 (464)
...|+.+|+|||||||||||||++|+++|++++.+ ++.|+.++.++++|..| +..+|||||||||
T Consensus 158 ~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~IlfiDEi 233 (389)
T PRK03992 158 EEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELA----REKAPSIIFIDEI 233 (389)
T ss_pred HhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHH----HhcCCeEEEEech
Confidence 35689999999999999999999999999999876 68899999999999988 8889999999999
Q ss_pred cccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CC
Q 012418 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 298 (464)
Q Consensus 221 Dal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~ 298 (464)
|++++.+.+. .......+.+++++++. +++|. ....+|.||+|||+++.||++|+||||||+.|++ |+
T Consensus 234 D~l~~~r~~~--~~~~~~~~~~~l~~lL~-----~ld~~---~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~ 303 (389)
T PRK03992 234 DAIAAKRTDS--GTSGDREVQRTLMQLLA-----EMDGF---DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPD 303 (389)
T ss_pred hhhhcccccC--CCCccHHHHHHHHHHHH-----hcccc---CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCC
Confidence 9998876532 22233455666777766 67776 5567899999999999999999999999999996 99
Q ss_pred HHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHHH
Q 012418 299 REDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 299 ~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~~ 335 (464)
.++|.+|++.++.. .+++.+.|++.++||+|+||..+
T Consensus 304 ~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 304 EEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAI 344 (389)
T ss_pred HHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHH
Confidence 99999998877654 35677899999999999999743
No 27
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=9.8e-31 Score=302.93 Aligned_cols=163 Identities=9% Similarity=0.076 Sum_probs=126.2
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CC----------CCC--------------------
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GN----------AGE-------------------- 191 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~----------~Ge-------------------- 191 (464)
..|+++|+||||+||||||||+||+|+|++++++ ++ +|+
T Consensus 1624 rLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e 1703 (2281)
T CHL00206 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703 (2281)
T ss_pred HcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhh
Confidence 3489999999999999999999999999999998 22 121
Q ss_pred -----------hHH--HHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCC
Q 012418 192 -----------PAK--LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 258 (464)
Q Consensus 192 -----------~~k--~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG 258 (464)
.++ .||.+|+.| ++.+||||||||||+++.... ....++++| + +|+|
T Consensus 1704 ~~n~~~~~m~~~e~~~rIr~lFelA----Rk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLL-n--------eLDg 1763 (2281)
T CHL00206 1704 MMNALTMDMMPKIDRFYITLQFELA----KAMSPCIIWIPNIHDLNVNES-------NYLSLGLLV-N--------SLSR 1763 (2281)
T ss_pred hcchhhhhhhhhhhHHHHHHHHHHH----HHCCCeEEEEEchhhcCCCcc-------ceehHHHHH-H--------Hhcc
Confidence 222 277788888 999999999999999986521 112234433 2 5555
Q ss_pred ccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhh-------cCCCCCChhHHHHHhcCCCh
Q 012418 259 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGI-------FRTDNVPKEDIVKLVDTFPG 329 (464)
Q Consensus 259 ~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~-------~~~~~v~~~~la~lt~gfsg 329 (464)
........+|+||||||+|+.|||||+||||||+.|++ |+..+|.+++..+ +..+.++.+.+|+.|.||+|
T Consensus 1764 ~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSG 1843 (2281)
T CHL00206 1764 DCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNA 1843 (2281)
T ss_pred ccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCH
Confidence 42223457899999999999999999999999999996 8888888875432 22334678899999999999
Q ss_pred hhHHHH
Q 012418 330 QSIDFF 335 (464)
Q Consensus 330 adLd~~ 335 (464)
|||..+
T Consensus 1844 ADLanL 1849 (2281)
T CHL00206 1844 RDLVAL 1849 (2281)
T ss_pred HHHHHH
Confidence 999754
No 28
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-30 Score=261.74 Aligned_cols=253 Identities=17% Similarity=0.254 Sum_probs=181.8
Q ss_pred ccccccccccccCccCcchhhhhHHHHHHHHhhh--hCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC---------
Q 012418 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFL--NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------- 186 (464)
Q Consensus 118 ~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l--~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------- 186 (464)
...-..+|+++.+-..+...+.+-+++..-+.-+ .-.-+++|+|||||||||||||++|+|+|++.|.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 3444456677776544444444444333322222 22346799999999999999999999999998876
Q ss_pred --CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCC
Q 012418 187 --GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264 (464)
Q Consensus 187 --~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~ 264 (464)
+|.|+.+++++.+|-.| .+-+||||||||+|+..+.|. ..+.+....+-+++.+ ..||.. ...
T Consensus 164 t~KWfgE~eKlv~AvFslA----sKl~P~iIFIDEvds~L~~R~-s~dHEa~a~mK~eFM~---------~WDGl~-s~~ 228 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLA----SKLQPSIIFIDEVDSFLGQRR-STDHEATAMMKNEFMA---------LWDGLS-SKD 228 (386)
T ss_pred chhhHHHHHHHHHHHHhhh----hhcCcceeehhhHHHHHhhcc-cchHHHHHHHHHHHHH---------Hhcccc-CCC
Confidence 89999999999999999 899999999999999998884 6676777777777763 456662 233
Q ss_pred CCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCC----CChhHHHHHhcCCChhhHHHHHHH
Q 012418 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN----VPKEDIVKLVDTFPGQSIDFFGAL 338 (464)
Q Consensus 265 ~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~----v~~~~la~lt~gfsgadLd~~~al 338 (464)
..+|.|+++||||.+||.|++| ||-+.+++ |+.++|.+|++-+++.++ +++..|+..|+||||.||..++
T Consensus 229 ~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC-- 304 (386)
T KOG0737|consen 229 SERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELC-- 304 (386)
T ss_pred CceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHH--
Confidence 4569999999999999999999 99998885 999999999999988654 5677999999999999997442
Q ss_pred HhhhhHHHHHHHHHH-hchhhhhhhhhcCCCCCC---CcCCCccCHHHHHHHhHhh
Q 012418 339 RARVYDDEVRKWISE-VGIERIGKRLVNSKEGPP---TFEQPKMTLDKLLEYGRML 390 (464)
Q Consensus 339 ra~~~~~~i~~~i~~-~~~e~l~~~l~~~~~~~~---~~~~~~~t~~~Lleag~~l 390 (464)
..+.-.-|++++.. .+..++.+.+...+...+ ...-..++.++|..+-+.+
T Consensus 305 -~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v 359 (386)
T KOG0737|consen 305 -RLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRV 359 (386)
T ss_pred -HHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhh
Confidence 22223346666654 222222222221111111 1123467888888887744
No 29
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=2.9e-30 Score=252.07 Aligned_cols=191 Identities=22% Similarity=0.286 Sum_probs=154.6
Q ss_pred cccccccccccCccCcchhhhhHHHHHHHHhhhhCC---CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC---------
Q 012418 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLP---NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------- 186 (464)
Q Consensus 119 ~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~---gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------- 186 (464)
..+..+|++++|.. ..+....++-.||..| |-=.|+.+|+|||||||||++|+|+|+++..+
T Consensus 114 ~~~~it~ddViGqE------eAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~l 187 (368)
T COG1223 114 IISDITLDDVIGQE------EAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATEL 187 (368)
T ss_pred hhccccHhhhhchH------HHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHH
Confidence 33455677777751 1134455666677633 55679999999999999999999999999888
Q ss_pred --CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCC
Q 012418 187 --GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264 (464)
Q Consensus 187 --~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~ 264 (464)
.++|+.++.|+++|.+| ++.+|||+||||+|+++-.|.-.+-.+.-..+||++| ++|||. .+
T Consensus 188 iGehVGdgar~Ihely~rA----~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALL---------TelDgi---~e 251 (368)
T COG1223 188 IGEHVGDGARRIHELYERA----RKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALL---------TELDGI---KE 251 (368)
T ss_pred HHHHhhhHHHHHHHHHHHH----HhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHH---------HhccCc---cc
Confidence 78999999999999999 9999999999999999654431222223346788877 589999 78
Q ss_pred CCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCC----CCChhHHHHHhcCCChhhHH
Q 012418 265 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSID 333 (464)
Q Consensus 265 ~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~----~v~~~~la~lt~gfsgadLd 333 (464)
+.+|..|++||+|+.||||+.. ||+..|++ |+.++|.+|+..+.++- +.++..+++.+.||||.||.
T Consensus 252 neGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdik 324 (368)
T COG1223 252 NEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIK 324 (368)
T ss_pred CCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHH
Confidence 8999999999999999999986 99999995 99999999987766554 44466999999999999984
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=3.1e-30 Score=282.57 Aligned_cols=169 Identities=24% Similarity=0.369 Sum_probs=138.5
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
..|.+.|+|+|||||||||||++|+++|++++.+ .+.|.....++++|..| +...||||||||||
T Consensus 210 ~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A----~~~~P~ILfIDEID 285 (638)
T CHL00176 210 AVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKA----KENSPCIVFIDEID 285 (638)
T ss_pred hccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHH----hcCCCcEEEEecch
Confidence 3588999999999999999999999999999987 45566677888889888 88999999999999
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCH
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 299 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~ 299 (464)
++...++.... ..+....++|..++. ++||. ....+|.||+|||+++.||++|+||||||+.+.+ |+.
T Consensus 286 ~l~~~r~~~~~--~~~~e~~~~L~~LL~-----~~dg~---~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 286 AVGRQRGAGIG--GGNDEREQTLNQLLT-----EMDGF---KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred hhhhcccCCCC--CCcHHHHHHHHHHHh-----hhccc---cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH
Confidence 99877652211 122334455555554 77777 5667899999999999999999999999999996 999
Q ss_pred HHHHHHHHhhcCCC----CCChhHHHHHhcCCChhhHHHH
Q 012418 300 EDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 300 eeR~eIl~~~~~~~----~v~~~~la~lt~gfsgadLd~~ 335 (464)
++|.+|++.++... +++...+++.+.||+|+||..+
T Consensus 356 ~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~l 395 (638)
T CHL00176 356 EGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANL 395 (638)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHH
Confidence 99999998887654 3445589999999999999743
No 31
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=3.7e-29 Score=263.53 Aligned_cols=168 Identities=21% Similarity=0.348 Sum_probs=140.9
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
..|+.+|+|+|||||||||||++|++||++++.+ ++.|+.++.++++|..| +.+.||||||||||
T Consensus 211 ~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A----~~~~P~ILfIDEID 286 (438)
T PTZ00361 211 DIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EENAPSIVFIDEID 286 (438)
T ss_pred hcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHH----HhCCCcEEeHHHHH
Confidence 4589999999999999999999999999998866 67889999999999988 88899999999999
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCH
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 299 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~ 299 (464)
+++.++... .....+.+..++++++. +++|. ....+|.||+|||+++.||++++||||||+.|++ |+.
T Consensus 287 ~l~~kR~~~--~sgg~~e~qr~ll~LL~-----~Ldg~---~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 287 AIGTKRYDA--TSGGEKEIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred HHhccCCCC--CCcccHHHHHHHHHHHH-----HHhhh---cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH
Confidence 998876521 11223344555556665 67776 4556899999999999999999999999999997 999
Q ss_pred HHHHHHHHhhcC----CCCCChhHHHHHhcCCChhhHHH
Q 012418 300 EDRIGVCSGIFR----TDNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 300 eeR~eIl~~~~~----~~~v~~~~la~lt~gfsgadLd~ 334 (464)
++|.+|++.++. ..+++.+.++..++||+|+||..
T Consensus 357 ~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~ 395 (438)
T PTZ00361 357 KTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKA 395 (438)
T ss_pred HHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHH
Confidence 999999886654 34677889999999999999874
No 32
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=2.1e-28 Score=269.16 Aligned_cols=167 Identities=23% Similarity=0.332 Sum_probs=139.8
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
..+.+.|+|+||+||||||||++|+++|++++.+ .+.|.....++.+|..| +..+||||||||||
T Consensus 179 ~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a----~~~~P~IifIDEiD 254 (644)
T PRK10733 179 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEID 254 (644)
T ss_pred hcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH----HhcCCcEEEehhHh
Confidence 3467889999999999999999999999999987 46788888999999988 88899999999999
Q ss_pred ccccCCCCCCc--cchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--C
Q 012418 222 AGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 297 (464)
Q Consensus 222 al~~~r~~~~~--~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P 297 (464)
++..+++.... .....+.++++| ++|||. ....+|+||+|||+++.||+|++||||||+.+++ |
T Consensus 255 ~l~~~r~~~~~g~~~~~~~~ln~lL---------~~mdg~---~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 255 AVGRQRGAGLGGGHDEREQTLNQML---------VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred hhhhccCCCCCCCchHHHHHHHHHH---------Hhhhcc---cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 99887653211 122334555555 377887 5667899999999999999999999999999996 9
Q ss_pred CHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHHH
Q 012418 298 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 298 ~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~~ 335 (464)
+.++|.+|++.++.. .+++...|++.+.||+|+||..+
T Consensus 323 d~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l 364 (644)
T PRK10733 323 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 364 (644)
T ss_pred CHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHH
Confidence 999999999888764 35667789999999999999754
No 33
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=2.6e-28 Score=251.14 Aligned_cols=168 Identities=25% Similarity=0.374 Sum_probs=140.0
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
..|+.+|+|+|||||||||||++|+++|++++.+ .+.|+..+.++++|..| +...|+||||||+|
T Consensus 150 ~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~il~iDEiD 225 (364)
T TIGR01242 150 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELA----KEKAPSIIFIDEID 225 (364)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHH----HhcCCcEEEhhhhh
Confidence 4689999999999999999999999999999866 67788888889988887 88899999999999
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCH
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 299 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~ 299 (464)
.+...+.+. ....+..++.++++++. ++++. ....++.||+|||+++.||++++||||||+.|++ |+.
T Consensus 226 ~l~~~~~~~--~~~~~~~~~~~l~~ll~-----~ld~~---~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~ 295 (364)
T TIGR01242 226 AIAAKRTDS--GTSGDREVQRTLMQLLA-----ELDGF---DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDF 295 (364)
T ss_pred hhccccccC--CCCccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCH
Confidence 998766522 22234455566666665 56665 4556899999999999999999999999999986 999
Q ss_pred HHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 300 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 300 eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
++|.+|++.+... .+++.+.|++.++||+|+||..
T Consensus 296 ~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~ 334 (364)
T TIGR01242 296 EGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKA 334 (364)
T ss_pred HHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHH
Confidence 9999998776543 3467889999999999999963
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.3e-27 Score=250.81 Aligned_cols=229 Identities=24% Similarity=0.331 Sum_probs=171.2
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCC-cEEEEeccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGK-MCCLFINDL 220 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~-P~ILfIDEI 220 (464)
..|+++|+|+|+|||||||||+++++||++.+.. ++.||+++++|..|+.| .+.+ |+|||||||
T Consensus 212 s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a----~k~~~psii~IdEl 287 (693)
T KOG0730|consen 212 SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEA----LKFQVPSIIFIDEL 287 (693)
T ss_pred hcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHH----hccCCCeeEeHHhH
Confidence 3599999999999999999999999999999944 89999999999999999 8888 999999999
Q ss_pred cccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CC
Q 012418 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 298 (464)
Q Consensus 221 Dal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~ 298 (464)
|++++++... .. +..+++.+++ .++| |+ ....+|+||+|||+|+.||+++.| ||||+.+.+ |+
T Consensus 288 d~l~p~r~~~-~~-~e~Rv~sqll-tL~d--------g~---~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~ 352 (693)
T KOG0730|consen 288 DALCPKREGA-DD-VESRVVSQLL-TLLD--------GL---KPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPG 352 (693)
T ss_pred hhhCCccccc-ch-HHHHHHHHHH-HHHh--------hC---cCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCC
Confidence 9999988732 32 5556666554 4444 55 456889999999999999999999 999999996 99
Q ss_pred HHHHHHHHHhhcCCC----CCChhHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHHhchhhhhhhhhcCC---CCCC
Q 012418 299 REDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK---EGPP 371 (464)
Q Consensus 299 ~eeR~eIl~~~~~~~----~v~~~~la~lt~gfsgadLd~~~alra~~~~~~i~~~i~~~~~e~l~~~l~~~~---~~~~ 371 (464)
..+|.+|++.+.+.- .++..+++..++||.|+||. +++......++++ ..+.+-..+.+.+ ....
T Consensus 353 ~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~---~l~~ea~~~~~r~-----~~~~~~~A~~~i~psa~Re~ 424 (693)
T KOG0730|consen 353 SDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLA---ALCREASLQATRR-----TLEIFQEALMGIRPSALREI 424 (693)
T ss_pred chhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHH---HHHHHHHHHHhhh-----hHHHHHHHHhcCCchhhhhe
Confidence 999999987776543 35566999999999999996 4444444444444 1111111122111 1123
Q ss_pred CcCCCccCHHHHHHHhHhhHHH-Hhhh-hhhhHHHHHhch
Q 012418 372 TFEQPKMTLDKLLEYGRMLVQE-QENV-KRVQLADKYLSE 409 (464)
Q Consensus 372 ~~~~~~~t~~~Lleag~~lv~E-qe~v-~~~~l~~~yl~~ 409 (464)
..+-|.+++++.=-. ..+..| |+.| +..+.+++|.+.
T Consensus 425 ~ve~p~v~W~dIGGl-E~lK~elq~~V~~p~~~pe~F~r~ 463 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGL-EELKRELQQAVEWPLKHPEKFARF 463 (693)
T ss_pred eccCCCCChhhccCH-HHHHHHHHHHHhhhhhchHHHHHh
Confidence 356778888875311 122233 3334 668999999987
No 35
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.6e-27 Score=244.08 Aligned_cols=196 Identities=19% Similarity=0.297 Sum_probs=153.5
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCC-cEEEEEcCCCccHHHHHHHHHHHhCCC-----------CC
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVP-LILGIWGGKGQGKSFQCELVFAKMGIN-----------GN 188 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p-~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~ 188 (464)
+...|+++.|...+...+.+.++....+.-+ ..|++.| +|+||+||||+|||+|++|||.|++.. +|
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~-F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDL-FLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHh-hhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 4444566666433333333322222222222 2355544 999999999999999999999999876 99
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCc
Q 012418 189 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268 (464)
Q Consensus 189 ~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V 268 (464)
.|+.+++||.+|.-| +..+|+||||||||+++..|. ......+.++..++|+ +++|. ......+|
T Consensus 227 ~Ge~eK~vralf~vA----r~~qPsvifidEidslls~Rs-~~e~e~srr~ktefLi---------q~~~~-~s~~~drv 291 (428)
T KOG0740|consen 227 VGESEKLVRALFKVA----RSLQPSVIFIDEIDSLLSKRS-DNEHESSRRLKTEFLL---------QFDGK-NSAPDDRV 291 (428)
T ss_pred cChHHHHHHHHHHHH----HhcCCeEEEechhHHHHhhcC-CcccccchhhhhHHHh---------hhccc-cCCCCCeE
Confidence 999999999999999 999999999999999999886 4566777788888885 55554 22345699
Q ss_pred eEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCC-----CChhHHHHHhcCCChhhHHH
Q 012418 269 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN-----VPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 269 ~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~-----v~~~~la~lt~gfsgadLd~ 334 (464)
+||+|||+|+.+|.|++| ||-+++++ |+.+.|..|++.++.... .+.+.|+++|+||+|.||.-
T Consensus 292 lvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~ 362 (428)
T KOG0740|consen 292 LVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITA 362 (428)
T ss_pred EEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHH
Confidence 999999999999999999 99999996 999999999888876652 23559999999999999973
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.6e-26 Score=254.68 Aligned_cols=166 Identities=19% Similarity=0.269 Sum_probs=141.4
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----------------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEe
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------GNAGEPAKLIRQRYREAADIIKKGKMCCLFI 217 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfI 217 (464)
.++.+|+|+|+|||||||||+.|+++|..+.-. +|+|+.++.+|.+|+.| ++.+|+|||+
T Consensus 294 ~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA----~k~qPSIIff 369 (1080)
T KOG0732|consen 294 FNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEA----QKTQPSIIFF 369 (1080)
T ss_pred cccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHH----hccCceEEec
Confidence 489999999999999999999999999997432 99999999999999999 9999999999
Q ss_pred ccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC-
Q 012418 218 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 296 (464)
Q Consensus 218 DEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i- 296 (464)
||||.+++-|. ..+......+|..+| ..|||. ..++.|+||+||||++.+||||+||||||+.+|+
T Consensus 370 deIdGlapvrS-skqEqih~SIvSTLL---------aLmdGl---dsRgqVvvigATnRpda~dpaLRRPgrfdref~f~ 436 (1080)
T KOG0732|consen 370 DEIDGLAPVRS-SKQEQIHASIVSTLL---------ALMDGL---DSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFP 436 (1080)
T ss_pred ccccccccccc-chHHHhhhhHHHHHH---------HhccCC---CCCCceEEEcccCCccccchhhcCCcccceeEeee
Confidence 99999999886 344344445555444 256788 8889999999999999999999999999999995
Q ss_pred -CCHHHHHHHHHhhcCCC--CCC---hhHHHHHhcCCChhhHHHHH
Q 012418 297 -PTREDRIGVCSGIFRTD--NVP---KEDIVKLVDTFPGQSIDFFG 336 (464)
Q Consensus 297 -P~~eeR~eIl~~~~~~~--~v~---~~~la~lt~gfsgadLd~~~ 336 (464)
|+.++|.+|+.-+..+- .+. .+.+++.+.||.|+||.+++
T Consensus 437 lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 437 LPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred CCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 99999999976665543 333 34899999999999998654
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=1.5e-24 Score=241.90 Aligned_cols=198 Identities=19% Similarity=0.305 Sum_probs=149.0
Q ss_pred cccccccccCccCcchhhhhHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CC
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GN 188 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~K-n~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~ 188 (464)
..++|+++.|-......+.+.+...+.. ......|+.+|+|+|||||||||||++|+++|++++.+ ++
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 3456677666432222222222111111 12235689999999999999999999999999999876 67
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCc
Q 012418 189 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268 (464)
Q Consensus 189 ~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V 268 (464)
.|+.+..++.+|+.| ....|+||||||||.+.+.+. ........+.+++ |+++++ +. .....+
T Consensus 253 ~g~~~~~l~~lf~~a----~~~~p~il~iDEid~l~~~r~-~~~~~~~~~~~~~-Ll~~ld--------~l---~~~~~v 315 (733)
T TIGR01243 253 YGESEERLREIFKEA----EENAPSIIFIDEIDAIAPKRE-EVTGEVEKRVVAQ-LLTLMD--------GL---KGRGRV 315 (733)
T ss_pred ccHHHHHHHHHHHHH----HhcCCcEEEeehhhhhccccc-CCcchHHHHHHHH-HHHHhh--------cc---ccCCCE
Confidence 888999999999988 788999999999999988765 2333334445544 444444 33 345678
Q ss_pred eEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHHH
Q 012418 269 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 269 ~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~~ 335 (464)
+||+|||+++.||++++|+||||+.+++ |+.++|.+|++.+... .+++.+.+++.++||+|++|..+
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l 388 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAAL 388 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHH
Confidence 9999999999999999999999999986 9999999998866543 35567799999999999999743
No 38
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.5e-22 Score=206.98 Aligned_cols=197 Identities=17% Similarity=0.202 Sum_probs=136.4
Q ss_pred ccccccCccCcchhhhhHHHHHH-HHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCCChHHHH
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHI-TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAGEPAKLI 196 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i-~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~Ge~~k~I 196 (464)
+|+.+.-+..+++++++.+..-+ -|.|++..|....||.|||||||||||++..|+|++|+.. ..++.... +
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~d-L 277 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSD-L 277 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHH-H
Confidence 44555555455555555443322 3567778899999999999999999999999999999987 33344333 6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhH--HHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEe
Q 012418 197 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ--MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG 274 (464)
Q Consensus 197 r~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~--~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTT 274 (464)
|.++..+ ...+||+|+|||+-+.-+........+.+ ...-+|--|+. .+||.|......+ +||.||
T Consensus 278 r~LL~~t------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLN-----fiDGlwSscg~ER-IivFTT 345 (457)
T KOG0743|consen 278 RHLLLAT------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLN-----FLDGLWSSCGDER-IIVFTT 345 (457)
T ss_pred HHHHHhC------CCCcEEEEeecccccccccccccccccccCCcceeehHHhhh-----hhccccccCCCce-EEEEec
Confidence 6666544 56689999999998543221111100001 11112333333 6679988776454 589999
Q ss_pred CCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCC--CCChhHHHHHhcCC--ChhhHH
Q 012418 275 NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTF--PGQSID 333 (464)
Q Consensus 275 N~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~--~v~~~~la~lt~gf--sgadLd 333 (464)
|+++.|||||+||||||.+|++ =+.++-..+++.++.-+ ..-.++|.++.++- ++|++.
T Consensus 346 Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~ 410 (457)
T KOG0743|consen 346 NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVA 410 (457)
T ss_pred CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHH
Confidence 9999999999999999999998 58888888888888764 33366888887776 555553
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=1.1e-21 Score=169.89 Aligned_cols=119 Identities=27% Similarity=0.431 Sum_probs=98.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCC-cEEEEeccccccccCCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGK-MCCLFINDLDAGAGRMGG 229 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~-P~ILfIDEIDal~~~r~~ 229 (464)
|||+||||||||++|+++|+.++.+ .+.++..+.++..|..+ +... ||||||||+|.+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~vl~iDe~d~l~~~~~- 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKA----KKSAKPCVLFIDEIDKLFPKSQ- 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHH----HHTSTSEEEEEETGGGTSHHCS-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccc----cccccceeeeeccchhcccccc-
Confidence 7999999999999999999999976 57788889999999988 7665 99999999999988762
Q ss_pred CCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeCC
Q 012418 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 297 (464)
Q Consensus 230 ~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~iP 297 (464)
.......+.+.+.|++.+++.. ....+++||+|||+++.|+++|+| +||++.+++|
T Consensus 76 -~~~~~~~~~~~~~L~~~l~~~~----------~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 76 -PSSSSFEQRLLNQLLSLLDNPS----------SKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp -TSSSHHHHHHHHHHHHHHHTTT----------TTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred -cccccccccccceeeecccccc----------cccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 3445556666667777777211 124679999999999999999999 9999999876
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.1e-20 Score=184.82 Aligned_cols=194 Identities=16% Similarity=0.280 Sum_probs=142.7
Q ss_pred CcchhhhhcccccccccccccccccccCccCcchhhhhHHHHHH--HHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHH
Q 012418 103 SGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHI--TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180 (464)
Q Consensus 103 ~g~~~~i~~~~~~~~~~~r~~~f~n~~~~~~i~~~~~d~~~~~i--~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA 180 (464)
.|+++=+.++.-|++...-.=-|++++-+-.+++++++-..... ...-....-+...|-||||||||||||+||||+|
T Consensus 119 d~~esii~an~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLa 198 (423)
T KOG0744|consen 119 DGKESIIAANHWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALA 198 (423)
T ss_pred cchhhhhhhhheeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHH
Confidence 34444444444555533222224777766666666664332211 1111112235667899999999999999999999
Q ss_pred HHhCCC--------------------CCCCChHHHHHHHHHHHHHHHH-hCCcEEEEeccccccccCCC---CCCccchh
Q 012418 181 AKMGIN--------------------GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMG---GTTQYTVN 236 (464)
Q Consensus 181 ~elg~~--------------------~~~Ge~~k~Ir~~F~~A~~~~~-~~~P~ILfIDEIDal~~~r~---~~~~~~~~ 236 (464)
..|.+. +|.+|+.+++..+|++..++++ .+...+++|||+++++..|. ...+.+-.
T Consensus 199 QkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDa 278 (423)
T KOG0744|consen 199 QKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDA 278 (423)
T ss_pred HhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchH
Confidence 998665 9999999999999999988888 67778999999999965442 22344556
Q ss_pred hHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhc
Q 012418 237 NQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 237 ~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~ 310 (464)
-|.||++|. |+|.. ...++|.|++|+|-.+.||.||.. |-|-..++ |+.+.|.+|++...
T Consensus 279 IRvVNalLT---------QlDrl---K~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 279 IRVVNALLT---------QLDRL---KRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HHHHHHHHH---------HHHHh---ccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 688998884 55556 677999999999999999999996 88888887 99999999987654
No 41
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=7.3e-20 Score=198.43 Aligned_cols=137 Identities=21% Similarity=0.312 Sum_probs=118.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC--------------------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecc
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN--------------------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 219 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~--------------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDE 219 (464)
.+|||+||||+|||+|+++||+.+|.. .|+|.....|-+-..+| ....| |++|||
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka----~~~NP-v~LLDE 425 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKA----GVKNP-VFLLDE 425 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHh----CCcCC-eEEeec
Confidence 489999999999999999999999876 78998888777777777 55555 999999
Q ss_pred ccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccC--CCCCceEEEEeCCCCCCchhhccCCcceEEEeC-
Q 012418 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE--ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 296 (464)
Q Consensus 220 IDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~--~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i- 296 (464)
||++...+.|.+. ..|++++|+++|..+..+|.+. +.+.|++|+|+|..+.||.|||- ||+. |.+
T Consensus 426 IDKm~ss~rGDPa---------SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEi-I~ls 493 (782)
T COG0466 426 IDKMGSSFRGDPA---------SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEV-IRLS 493 (782)
T ss_pred hhhccCCCCCChH---------HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ceee-eeec
Confidence 9999888765544 6689999999999999998865 45899999999999999999996 9987 555
Q ss_pred -CCHHHHHHHHHhhcCCC
Q 012418 297 -PTREDRIGVCSGIFRTD 313 (464)
Q Consensus 297 -P~~eeR~eIl~~~~~~~ 313 (464)
.+.++..+|.+.|+.+.
T Consensus 494 gYt~~EKl~IAk~~LiPk 511 (782)
T COG0466 494 GYTEDEKLEIAKRHLIPK 511 (782)
T ss_pred CCChHHHHHHHHHhcchH
Confidence 89999999998887653
No 42
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.5e-18 Score=187.65 Aligned_cols=183 Identities=17% Similarity=0.240 Sum_probs=137.9
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC--------------------CCCCChHHHHHHHHHHHHHHHHhCCc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------GNAGEPAKLIRQRYREAADIIKKGKM 212 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P 212 (464)
+.|--..++|||+||||.|||+++++||..||.. .|+|.....|-+-+.+. +...|
T Consensus 432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v----~t~NP 507 (906)
T KOG2004|consen 432 LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKV----KTENP 507 (906)
T ss_pred hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhh----CCCCc
Confidence 4566666899999999999999999999999876 78888777776777766 55555
Q ss_pred EEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccC--CCCCceEEEEeCCCCCCchhhccCCcc
Q 012418 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE--ENPRVPIIVTGNDFSTLYAPLIRDGRM 290 (464)
Q Consensus 213 ~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~--~~~~V~VIaTTN~~~~LDpALlRpGRf 290 (464)
+++|||||++.....|.+. ..|++++|+++|..+-..|.+. +.++|.+|||+|..+.||+||+. ||
T Consensus 508 -liLiDEvDKlG~g~qGDPa---------sALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM 575 (906)
T KOG2004|consen 508 -LILIDEVDKLGSGHQGDPA---------SALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM 575 (906)
T ss_pred -eEEeehhhhhCCCCCCChH---------HHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh
Confidence 9999999999844433333 5688999999999998888764 56899999999999999999996 89
Q ss_pred eEEEeC--CCHHHHHHHHHhhcCCCCCChhHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHHhchhhhhhhh
Q 012418 291 EKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRL 363 (464)
Q Consensus 291 D~~i~i--P~~eeR~eIl~~~~~~~~v~~~~la~lt~gfsgadLd~~~alra~~~~~~i~~~i~~~~~e~l~~~l 363 (464)
+. |++ ...++..+|.+.++.+... .-.|.+..-++. -..+....|++|.++.|+++|-+.+
T Consensus 576 Ev-IelsGYv~eEKv~IA~~yLip~a~-------~~~gl~~e~v~i----s~~al~~lI~~YcrEaGVRnLqk~i 638 (906)
T KOG2004|consen 576 EV-IELSGYVAEEKVKIAERYLIPQAL-------KDCGLKPEQVKI----SDDALLALIERYCREAGVRNLQKQI 638 (906)
T ss_pred he-eeccCccHHHHHHHHHHhhhhHHH-------HHcCCCHHhcCc----cHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 87 666 6889999999988854211 112333332221 1122244577888888888876643
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3e-18 Score=176.26 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=122.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC---C-------CCCChHHHHHHHHHHHHHHHH-hCCcEEEEeccccccccC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN---G-------NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGR 226 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~---~-------~~Ge~~k~Ir~~F~~A~~~~~-~~~P~ILfIDEIDal~~~ 226 (464)
+-+.||+|||||||||+.|+-+|...|+. + .--+....|.++|+.| + ..+.-+|||||.|+++..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWa----kkS~rGLllFIDEADAFLce 458 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWA----KKSRRGLLLFIDEADAFLCE 458 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHH----hhcccceEEEehhhHHHHHH
Confidence 44899999999999999999999999988 2 2223456799999998 7 455679999999999988
Q ss_pred CCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHH
Q 012418 227 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304 (464)
Q Consensus 227 r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~e 304 (464)
|.....++.....+|++|++ .......++++.+||+|..||.|+-. |+|..+++ |..|+|..
T Consensus 459 RnktymSEaqRsaLNAlLfR--------------TGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfk 522 (630)
T KOG0742|consen 459 RNKTYMSEAQRSALNALLFR--------------TGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFK 522 (630)
T ss_pred hchhhhcHHHHHHHHHHHHH--------------hcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHH
Confidence 87555556667778888843 23445678899999999999999986 99999995 99999998
Q ss_pred HHHhhcCC---------------------------CCCC----hhHHHHHhcCCChhhHHH
Q 012418 305 VCSGIFRT---------------------------DNVP----KEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 305 Il~~~~~~---------------------------~~v~----~~~la~lt~gfsgadLd~ 334 (464)
++.-++.+ .+.+ +.++++.|+||||.+|.-
T Consensus 523 ll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiak 583 (630)
T KOG0742|consen 523 LLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAK 583 (630)
T ss_pred HHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHH
Confidence 86543311 0111 228899999999999863
No 44
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.70 E-value=4.7e-17 Score=182.99 Aligned_cols=134 Identities=22% Similarity=0.300 Sum_probs=97.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC--------------------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecc
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN--------------------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 219 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~--------------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDE 219 (464)
..+||+||||||||++|++||++++.+ .|+|...+.+.+.|..+ ....| ||||||
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~----~~~~~-villDE 422 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA----KTKNP-LFLLDE 422 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh----CcCCC-EEEEec
Confidence 479999999999999999999999765 34555556666666665 44445 899999
Q ss_pred ccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCcccc--CCCCCceEEEEeCCCCCCchhhccCCcceEEEeC-
Q 012418 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 296 (464)
Q Consensus 220 IDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~--~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i- 296 (464)
||++.....+. ....|++++|+.++..+-..+.. .+.+++++|+|||.++.||++|++ ||+ .|.+
T Consensus 423 idk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~ 490 (775)
T TIGR00763 423 IDKIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELS 490 (775)
T ss_pred hhhcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecC
Confidence 99998643311 12457788885444333222211 234689999999999999999998 886 4665
Q ss_pred -CCHHHHHHHHHhhc
Q 012418 297 -PTREDRIGVCSGIF 310 (464)
Q Consensus 297 -P~~eeR~eIl~~~~ 310 (464)
|+.+++.+|++.++
T Consensus 491 ~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 491 GYTEEEKLEIAKKYL 505 (775)
T ss_pred CCCHHHHHHHHHHHH
Confidence 78999999987654
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.65 E-value=1.1e-15 Score=150.65 Aligned_cols=128 Identities=17% Similarity=0.157 Sum_probs=88.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCC---------------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM---GIN---------------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el---g~~---------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
..+|||||||||||++|+++|+++ +.. .++|+....++++|..| .++||||||+|
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~VL~IDE~~ 115 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKA-------LGGVLFIDEAY 115 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhc-------cCCEEEEechh
Confidence 578999999999999999999875 221 45677777777777765 35799999999
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC-----CCCchhhccCCcceEEEeC
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGRMEKFYWA 296 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~-----~~LDpALlRpGRfD~~i~i 296 (464)
.+... .+...+ +....+|++.++ .....+.+|++++.. ..++|+|.+ ||...+.+
T Consensus 116 ~L~~~----~~~~~~-~~~i~~Ll~~~e-------------~~~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f 175 (261)
T TIGR02881 116 SLARG----GEKDFG-KEAIDTLVKGME-------------DNRNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDF 175 (261)
T ss_pred hhccC----CccchH-HHHHHHHHHHHh-------------ccCCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEE
Confidence 98632 111122 223344555554 223445566665432 237889987 88877776
Q ss_pred --CCHHHHHHHHHhhcCCCC
Q 012418 297 --PTREDRIGVCSGIFRTDN 314 (464)
Q Consensus 297 --P~~eeR~eIl~~~~~~~~ 314 (464)
++.+++.+|++.++...+
T Consensus 176 ~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 176 PDYTVEELMEIAERMVKERE 195 (261)
T ss_pred CCCCHHHHHHHHHHHHHHcC
Confidence 588999999988776543
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.63 E-value=5.7e-15 Score=148.44 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=92.7
Q ss_pred CCCCCC---cEEEEEcCCCccHHHHHHHHHHHhC---CC---------------CCCCChHHHHHHHHHHHHHHHHhCCc
Q 012418 154 PNVKVP---LILGIWGGKGQGKSFQCELVFAKMG---IN---------------GNAGEPAKLIRQRYREAADIIKKGKM 212 (464)
Q Consensus 154 ~gi~~p---~GLLL~GPPGtGKT~LAkaIA~elg---~~---------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P 212 (464)
.|+.+| ..+||+||||||||++|+++|+.+. .. .++|+.+..++++|..| .+
T Consensus 51 ~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a-------~g 123 (287)
T CHL00181 51 LGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA-------MG 123 (287)
T ss_pred cCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHc-------cC
Confidence 455444 4589999999999999999999862 21 35666655555555544 45
Q ss_pred EEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccC
Q 012418 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRD 287 (464)
Q Consensus 213 ~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRp 287 (464)
+||||||+|.+...+. .... ...+..+|+.+++ ....++.||+|++... .++|+|+|
T Consensus 124 gVLfIDE~~~l~~~~~---~~~~-~~e~~~~L~~~me-------------~~~~~~~vI~ag~~~~~~~~~~~np~L~s- 185 (287)
T CHL00181 124 GVLFIDEAYYLYKPDN---ERDY-GSEAIEILLQVME-------------NQRDDLVVIFAGYKDRMDKFYESNPGLSS- 185 (287)
T ss_pred CEEEEEccchhccCCC---ccch-HHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhcCHHHHH-
Confidence 8999999999865432 1112 2445556666665 2234567777776422 33589998
Q ss_pred CcceEEEeC--CCHHHHHHHHHhhcCCCC
Q 012418 288 GRMEKFYWA--PTREDRIGVCSGIFRTDN 314 (464)
Q Consensus 288 GRfD~~i~i--P~~eeR~eIl~~~~~~~~ 314 (464)
||+..+++ ++.+++.+|++.++....
T Consensus 186 -R~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 186 -RIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred -hCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 99998887 789999999888876543
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.62 E-value=7.2e-15 Score=147.37 Aligned_cols=162 Identities=10% Similarity=0.097 Sum_probs=104.9
Q ss_pred cccCccCcchhhhhHHHHHHHHhhhhCCCCCC---CcEEEEEcCCCccHHHHHHHHHHHhCC-------C----------
Q 012418 127 NTLDGLYIAPAFMDKVVVHITKNFLNLPNVKV---PLILGIWGGKGQGKSFQCELVFAKMGI-------N---------- 186 (464)
Q Consensus 127 n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~---p~GLLL~GPPGtGKT~LAkaIA~elg~-------~---------- 186 (464)
+++|-..+...+.+-.............|+.+ ..++||+||||||||++|+++|..+.. +
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 45554444444433322222222333345543 458999999999999999999988631 1
Q ss_pred -CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCC
Q 012418 187 -GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265 (464)
Q Consensus 187 -~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~ 265 (464)
.+.|+.+..++++|..| .+++|||||+|.+...+.. .. ....+...|+++++ ...
T Consensus 103 ~~~~g~~~~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~~---~~-~~~~~~~~Ll~~le-------------~~~ 158 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRA-------MGGVLFIDEAYYLYRPDNE---RD-YGQEAIEILLQVME-------------NQR 158 (284)
T ss_pred HhhcccchHHHHHHHHHc-------cCcEEEEechhhhccCCCc---cc-hHHHHHHHHHHHHh-------------cCC
Confidence 45666666666666654 4589999999988644321 11 22345556666666 233
Q ss_pred CCceEEEEeCC--CCC---CchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCC
Q 012418 266 PRVPIIVTGND--FST---LYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN 314 (464)
Q Consensus 266 ~~V~VIaTTN~--~~~---LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~ 314 (464)
.++.||++++. .+. ++|+|.| ||+..|.+ ++.+++.+|++.++....
T Consensus 159 ~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 159 DDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred CCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhc
Confidence 56677777654 232 4799998 89988887 688999999888876543
No 48
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.6e-14 Score=156.57 Aligned_cols=168 Identities=17% Similarity=0.183 Sum_probs=132.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 226 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~ 226 (464)
.+-.|||+||+|||||.|++++++++..+ ...|+.-..|......++..+-+.+|+||++|++|.+++.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 34578999999999999999999998755 4455555555555555555558999999999999999883
Q ss_pred -CCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHH
Q 012418 227 -MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRI 303 (464)
Q Consensus 227 -r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~ 303 (464)
....++.++...+...+|.+++. .|. ..+..+.+|+|.+....|.|-|..|++|+..+.+ |+..+|.
T Consensus 510 s~~e~~q~~~~~~rla~flnqvi~---------~y~-~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~ 579 (952)
T KOG0735|consen 510 SSNENGQDGVVSERLAAFLNQVIK---------IYL-KRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRK 579 (952)
T ss_pred CcccCCcchHHHHHHHHHHHHHHH---------HHH-ccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHH
Confidence 33456777778888888887776 222 3345689999999999999999999999998887 8999999
Q ss_pred HHHHhhcCCCCCC-----hhHHHHHhcCCChhhHHHH
Q 012418 304 GVCSGIFRTDNVP-----KEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 304 eIl~~~~~~~~v~-----~~~la~lt~gfsgadLd~~ 335 (464)
+|+..++.+...+ .+-++..|+||..-||..|
T Consensus 580 ~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 580 EILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHH
Confidence 9988877665422 3368999999999999855
No 49
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=7.8e-14 Score=149.17 Aligned_cols=164 Identities=20% Similarity=0.251 Sum_probs=137.5
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
..++.+|++++++||||||||++++++|.+ +.. ++.|+.+..++..|..| +...|+++++||+|
T Consensus 12 ~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~ii~~d~~~ 86 (494)
T COG0464 12 KLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEA----EKLAPSIIFIDEID 86 (494)
T ss_pred HhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHH----HHhCCCeEeechhh
Confidence 358899999999999999999999999998 322 88999999999999999 88899999999999
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCH
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 299 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~ 299 (464)
.+.+.+.. ....+..+.+.+++. .+++. .... +.++..||++..+++++.|+|||++.+++ |+.
T Consensus 87 ~~~~~~~~-~~~~~~~~v~~~l~~---------~~d~~---~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 87 ALAPKRSS-DQGEVERRVVAQLLA---------LMDGL---KRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred hcccCccc-cccchhhHHHHHHHH---------hcccc---cCCc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence 99998874 566677777777773 34445 2344 88899999999999999999999999996 999
Q ss_pred HHHHHHHHhh----cCCCCCChhHHHHHhcCCChhhHHHH
Q 012418 300 EDRIGVCSGI----FRTDNVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 300 eeR~eIl~~~----~~~~~v~~~~la~lt~gfsgadLd~~ 335 (464)
+.|.+|+... +.....+.+.++..+.||.++++..+
T Consensus 153 ~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l 192 (494)
T COG0464 153 AGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGAL 192 (494)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHH
Confidence 9898885443 33446678899999999999999755
No 50
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.57 E-value=1.8e-14 Score=162.13 Aligned_cols=135 Identities=20% Similarity=0.296 Sum_probs=100.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC--------------------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecc
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN--------------------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 219 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~--------------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDE 219 (464)
..++|+||||||||+++++||+.++.+ .|.|.....+.+.+..+ ... .+||||||
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~----~~~-~~villDE 424 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV----GVK-NPLFLLDE 424 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc----CCC-CCEEEEEC
Confidence 479999999999999999999998876 24444444444444444 333 34899999
Q ss_pred ccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCcccc--CCCCCceEEEEeCCCCCCchhhccCCcceEEEeC-
Q 012418 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 296 (464)
Q Consensus 220 IDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~--~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i- 296 (464)
||++.....+. ....|++++|+.++..+...|.. .+.++|.+|+|||.. .|+|||+. ||+.+.+.
T Consensus 425 idk~~~~~~g~---------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~ii~~~~ 492 (784)
T PRK10787 425 IDKMSSDMRGD---------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RMEVIRLSG 492 (784)
T ss_pred hhhcccccCCC---------HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--ceeeeecCC
Confidence 99987653321 23578899998888877666554 356899999999998 59999997 99754333
Q ss_pred CCHHHHHHHHHhhcC
Q 012418 297 PTREDRIGVCSGIFR 311 (464)
Q Consensus 297 P~~eeR~eIl~~~~~ 311 (464)
++.++..+|++.++.
T Consensus 493 ~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 493 YTEDEKLNIAKRHLL 507 (784)
T ss_pred CCHHHHHHHHHHhhh
Confidence 899999999877763
No 51
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.55 E-value=5.7e-14 Score=142.92 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=99.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC--CCCC---ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN--GNAG---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 231 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--~~~G---e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~ 231 (464)
.++..+|||||||||||++|+++|++++.. ...+ +....+..++.. ...++||||||||.+...
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~------l~~~~vl~IDEi~~l~~~----- 117 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTN------LEEGDVLFIDEIHRLSPV----- 117 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHh------cccCCEEEEecHhhcchH-----
Confidence 456789999999999999999999999886 1111 112223333322 346789999999987432
Q ss_pred ccchhhHHHHHHHHhhhcCCC-cccCCCccc----cCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHH
Q 012418 232 QYTVNNQMVNATLMNIADNPT-NVQLPGMYN----QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304 (464)
Q Consensus 232 ~~~~~~~~v~~~L~~llD~~~-~v~ldG~~~----~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~e 304 (464)
....|..++++.. .+-++.... ....+.+.+|++||++..++++|.+ ||...+.+ |+.+++.+
T Consensus 118 --------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~ 187 (328)
T PRK00080 118 --------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEK 187 (328)
T ss_pred --------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHH
Confidence 1122333333110 011111100 0123457899999999999999976 78766665 89999999
Q ss_pred HHHhhcCCCCCC--hh---HHHHHhcCCChhhHH
Q 012418 305 VCSGIFRTDNVP--KE---DIVKLVDTFPGQSID 333 (464)
Q Consensus 305 Il~~~~~~~~v~--~~---~la~lt~gfsgadLd 333 (464)
|++......++. .+ .|++.+.|.+.....
T Consensus 188 il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~ 221 (328)
T PRK00080 188 IVKRSARILGVEIDEEGALEIARRSRGTPRIANR 221 (328)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHH
Confidence 988776555443 33 677777777754443
No 52
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.55 E-value=3.4e-14 Score=159.15 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=108.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh----------CCC-------------CCCCChHHHHHHHHHHHHHHHHhCCcEE
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GIN-------------GNAGEPAKLIRQRYREAADIIKKGKMCC 214 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el----------g~~-------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~I 214 (464)
....+|||||||||||++|+++|..+ +.. ++.|+.+..++.+|+.+ +...|+|
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~----~~~~~~I 277 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEI----EKEPNAI 277 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHH----hccCCeE
Confidence 34578999999999999999999987 222 67788888999999887 6667999
Q ss_pred EEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccCCc
Q 012418 215 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGR 289 (464)
Q Consensus 215 LfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRpGR 289 (464)
|||||||.+.+.... ..++ ..+..+|...+ ....+.+|++||..+ .+|+||.| |
T Consensus 278 LfiDEih~l~~~g~~-~~~~---~~~~~~L~~~l---------------~~g~i~~IgaTt~~e~~~~~~~d~al~r--R 336 (731)
T TIGR02639 278 LFIDEIHTIVGAGAT-SGGS---MDASNLLKPAL---------------SSGKLRCIGSTTYEEYKNHFEKDRALSR--R 336 (731)
T ss_pred EEEecHHHHhccCCC-CCcc---HHHHHHHHHHH---------------hCCCeEEEEecCHHHHHHHhhhhHHHHH--h
Confidence 999999999765431 1111 11223333222 235678999999743 58999999 8
Q ss_pred ceEEEeC--CCHHHHHHHHHhhcCC----C--CCChh---HHHHHhcCC------ChhhHHHHHH
Q 012418 290 MEKFYWA--PTREDRIGVCSGIFRT----D--NVPKE---DIVKLVDTF------PGQSIDFFGA 337 (464)
Q Consensus 290 fD~~i~i--P~~eeR~eIl~~~~~~----~--~v~~~---~la~lt~gf------sgadLd~~~a 337 (464)
|.. +++ |+.+++.+|++.+... . .++.+ .++.++..| |.-.|+++..
T Consensus 337 f~~-i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~ 400 (731)
T TIGR02639 337 FQK-IDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDE 400 (731)
T ss_pred Cce-EEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHH
Confidence 975 554 9999999998754321 2 34444 566667665 5556776643
No 53
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.1e-13 Score=147.85 Aligned_cols=164 Identities=14% Similarity=0.159 Sum_probs=126.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccccc
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal 223 (464)
+++....+||+|+||||||++++++|.++|++ ...+..+..+...|.+| +...|+||||-.+|.+
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a----~~~~pavifl~~~dvl 502 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRA----RRCSPAVLFLRNLDVL 502 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHH----hhcCceEEEEecccee
Confidence 45666789999999999999999999999998 44555666777888888 9999999999999998
Q ss_pred ccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeCCCHHHHH
Q 012418 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI 303 (464)
Q Consensus 224 ~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~iP~~eeR~ 303 (464)
.....+ ..+..+.+.+..++. .+.. ....++++||+||+..+.|++.+.+-.++...+..|+.++|.
T Consensus 503 ~id~dg-----ged~rl~~~i~~~ls------~e~~--~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl 569 (953)
T KOG0736|consen 503 GIDQDG-----GEDARLLKVIRHLLS------NEDF--KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRL 569 (953)
T ss_pred eecCCC-----chhHHHHHHHHHHHh------cccc--cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHH
Confidence 865443 222333333322222 1111 135678999999999999999999877777766679999999
Q ss_pred HHHHhhcCCCCCC----hhHHHHHhcCCChhhHHHH
Q 012418 304 GVCSGIFRTDNVP----KEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 304 eIl~~~~~~~~v~----~~~la~lt~gfsgadLd~~ 335 (464)
+|++.+.....++ ...+++.+.||+-.+|+-+
T Consensus 570 ~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l 605 (953)
T KOG0736|consen 570 EILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEAL 605 (953)
T ss_pred HHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHH
Confidence 9998887665555 4499999999999999754
No 54
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.50 E-value=2.8e-13 Score=131.64 Aligned_cols=152 Identities=15% Similarity=0.162 Sum_probs=89.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 231 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~ 231 (464)
..-.+|||||||||||+||+.||++++.+ ...... +.+..++.. .....|||||||..+
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~-~dl~~il~~------l~~~~ILFIDEIHRl-------- 113 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA-GDLAAILTN------LKEGDILFIDEIHRL-------- 113 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC-HHHHHHHHT--------TT-EEEECTCCC---------
T ss_pred CcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH-HHHHHHHHh------cCCCcEEEEechhhc--------
Confidence 34579999999999999999999999988 112222 222222222 245679999999643
Q ss_pred ccchhhHHHHHHHHhhhcCCCcccCCCc--c---ccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe--CCCHHHHHH
Q 012418 232 QYTVNNQMVNATLMNIADNPTNVQLPGM--Y---NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIG 304 (464)
Q Consensus 232 ~~~~~~~~v~~~L~~llD~~~~v~ldG~--~---~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~--iP~~eeR~e 304 (464)
+..++..|+..+++-...-+-|. . ..-..++.-+|+||++...|.+||+- ||-.... ..+.++..+
T Consensus 114 -----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~ 186 (233)
T PF05496_consen 114 -----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAK 186 (233)
T ss_dssp ------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHH
T ss_pred -----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHH
Confidence 24456677776663222111111 0 01123456799999999999999986 7776555 499999999
Q ss_pred HHHhhcCCCCCC--hh---HHHHHhcCCChhh
Q 012418 305 VCSGIFRTDNVP--KE---DIVKLVDTFPGQS 331 (464)
Q Consensus 305 Il~~~~~~~~v~--~~---~la~lt~gfsgad 331 (464)
|++.-...-+++ .+ +|++.+.|-|.-.
T Consensus 187 Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 187 IVKRSARILNIEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp HHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHhcCCChHHH
Confidence 987655444444 33 6666666665433
No 55
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.50 E-value=2e-13 Score=136.43 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=95.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCCC-C-CCC---hHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGING-N-AGE---PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 231 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~-~-~Ge---~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~ 231 (464)
..+..++||||||||||+||+++|++++.+. . .+. ....+...+. ....+.+|||||++.+....
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~~~vl~iDEi~~l~~~~---- 97 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILT------NLEEGDVLFIDEIHRLSPAV---- 97 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHH------hcccCCEEEEehHhhhCHHH----
Confidence 3456799999999999999999999998761 1 111 1111222221 13467899999999775321
Q ss_pred ccchhhHHHHHHHHhhhcCCC-cccCCCcccc----CCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHH
Q 012418 232 QYTVNNQMVNATLMNIADNPT-NVQLPGMYNQ----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304 (464)
Q Consensus 232 ~~~~~~~~v~~~L~~llD~~~-~v~ldG~~~~----~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~e 304 (464)
...|.+++++-. .+-++..+.. ...+.+.+|++||++..|+++|++ ||...+.+ |+.+++.+
T Consensus 98 ---------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~ 166 (305)
T TIGR00635 98 ---------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAE 166 (305)
T ss_pred ---------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHH
Confidence 122333333111 0111111110 123457899999999999999987 78766654 89999999
Q ss_pred HHHhhcCCCC--CChh---HHHHHhcCCChh
Q 012418 305 VCSGIFRTDN--VPKE---DIVKLVDTFPGQ 330 (464)
Q Consensus 305 Il~~~~~~~~--v~~~---~la~lt~gfsga 330 (464)
|++......+ ++.+ .|++.+.|.+..
T Consensus 167 il~~~~~~~~~~~~~~al~~ia~~~~G~pR~ 197 (305)
T TIGR00635 167 IVSRSAGLLNVEIEPEAALEIARRSRGTPRI 197 (305)
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHHhCCCcch
Confidence 9877665433 4434 566667776643
No 56
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=1.1e-12 Score=137.54 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=102.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC------------------------CC---C--ChHHHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGING------------------------NA---G--EPAKLIRQRYREAAD 205 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~------------------------~~---G--e~~k~Ir~~F~~A~~ 205 (464)
+.+.|.++|||||||+|||++|+++|+.+.... ++ | -....||++++.+..
T Consensus 32 ~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~ 111 (394)
T PRK07940 32 GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAAR 111 (394)
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHh
Confidence 455789999999999999999999999875431 11 1 123457888877632
Q ss_pred HHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhc
Q 012418 206 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285 (464)
Q Consensus 206 ~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALl 285 (464)
.-..+...|+||||+|.+... ..| .|+..++ +...++++|++|++++.|.|.++
T Consensus 112 ~p~~~~~kViiIDead~m~~~------------aan-aLLk~LE-------------ep~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 112 RPSTGRWRIVVIEDADRLTER------------AAN-ALLKAVE-------------EPPPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred CcccCCcEEEEEechhhcCHH------------HHH-HHHHHhh-------------cCCCCCeEEEEECChHHChHHHH
Confidence 222456679999999987322 123 3444454 33445667777777999999999
Q ss_pred cCCcceEEEeC--CCHHHHHHHHHhhcCCCCCChh---HHHHHhcCCChhhHHHH
Q 012418 286 RDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKE---DIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 286 RpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~~~---~la~lt~gfsgadLd~~ 335 (464)
+ |+- .+.+ |+.++..+++.... +++.+ .++.++.|.++..+.+.
T Consensus 166 S--Rc~-~i~f~~~~~~~i~~~L~~~~---~~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 166 S--RCR-HVALRTPSVEAVAEVLVRRD---GVDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred h--hCe-EEECCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 8 553 4554 88888877775322 34444 67889999999888764
No 57
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.45 E-value=5.5e-13 Score=151.49 Aligned_cols=150 Identities=19% Similarity=0.199 Sum_probs=104.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC---C--------------------CCCCChHHHHHHHHHHHHHHHH-hCCcEEE
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGI---N--------------------GNAGEPAKLIRQRYREAADIIK-KGKMCCL 215 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~---~--------------------~~~Ge~~k~Ir~~F~~A~~~~~-~~~P~IL 215 (464)
..++|+||||||||++|+.+|..+.- + .+.|+.+..++.++..+ + ...++||
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~----~~~~~~~IL 284 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEV----KASPQPIIL 284 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHH----HhcCCCeEE
Confidence 36789999999999999999998621 1 46677888888888877 4 3578999
Q ss_pred EeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccCCcc
Q 012418 216 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 290 (464)
Q Consensus 216 fIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRpGRf 290 (464)
|||||+.+.+.++...+.. ...+|... -.++.+.+|+||+..+ .+|+||.| ||
T Consensus 285 fIDEih~l~~~g~~~~~~d-----~~n~Lkp~---------------l~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf 342 (852)
T TIGR03345 285 FIDEAHTLIGAGGQAGQGD-----AANLLKPA---------------LARGELRTIAATTWAEYKKYFEKDPALTR--RF 342 (852)
T ss_pred EEeChHHhccCCCcccccc-----HHHHhhHH---------------hhCCCeEEEEecCHHHHhhhhhccHHHHH--hC
Confidence 9999999987654222211 11223211 1345688999998753 48999999 88
Q ss_pred eEEEeC--CCHHHHHHHHHhhcC---C-CCC--Chh---HHHHHhcCC------ChhhHHHHH
Q 012418 291 EKFYWA--PTREDRIGVCSGIFR---T-DNV--PKE---DIVKLVDTF------PGQSIDFFG 336 (464)
Q Consensus 291 D~~i~i--P~~eeR~eIl~~~~~---~-~~v--~~~---~la~lt~gf------sgadLd~~~ 336 (464)
.. |.+ |+.+++.+|++.+.. . .++ +.+ .++.++++| |+..||.+-
T Consensus 343 ~~-i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlld 404 (852)
T TIGR03345 343 QV-VKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLD 404 (852)
T ss_pred eE-EEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHH
Confidence 64 554 999999999655432 1 233 333 667788766 666777664
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.4e-12 Score=144.46 Aligned_cols=172 Identities=12% Similarity=0.152 Sum_probs=116.1
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC-----CC---------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING-----NA--------- 189 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~-----~~--------- 189 (464)
+|++++|. ..++..+++++.. -+.+..+||+||+|||||++|+++|+.+++.. -.
T Consensus 14 tFdEVIGQ---------e~Vv~~L~~aL~~--gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 14 DFASLVGQ---------EHVVRALTHALDG--GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred cHHHHcCc---------HHHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 56777776 3444555666553 36688999999999999999999999987530 00
Q ss_pred ---------------CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 190 ---------------GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 190 ---------------Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
......||++.+.+...-...+..|+||||+|.+.. ...|. |+..++
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~------------~A~NA-LLKtLE----- 144 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN------------HAFNA-MLKTLE----- 144 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH------------HHHHH-HHHHHH-----
Confidence 112344666666552211245678999999997732 12233 333444
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC-CCHHHHHHHHHhhcCCCCCChh-----HHHHHhcCCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCSGIFRTDNVPKE-----DIVKLVDTFP 328 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i-P~~eeR~eIl~~~~~~~~v~~~-----~la~lt~gfs 328 (464)
+....+.||++||+++.|.+.|+. ||-++-.- ++.++..++++.++..+++..+ .|++.++|-.
T Consensus 145 --------EPP~~v~FILaTtd~~KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 145 --------EPPPHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM 214 (830)
T ss_pred --------hcCCCeEEEEEECChhhccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 445578899999999999999987 77553332 7888888888888877765533 5666777766
Q ss_pred hhhHHH
Q 012418 329 GQSIDF 334 (464)
Q Consensus 329 gadLd~ 334 (464)
...|.+
T Consensus 215 RdALsL 220 (830)
T PRK07003 215 RDALSL 220 (830)
T ss_pred HHHHHH
Confidence 555554
No 59
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.44 E-value=1.2e-12 Score=146.90 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCC--------------------CCCCChHHHHHHHHHHHHHHHHhCCcEEE
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM---GIN--------------------GNAGEPAKLIRQRYREAADIIKKGKMCCL 215 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el---g~~--------------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~IL 215 (464)
+..+||+||||||||++|+++|..+ +++ ++.|+.+..++.+|..+ +...++||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l----~~~~~~IL 282 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNSIL 282 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHH----HhcCCCEE
Confidence 4566899999999999999999874 111 45677788888888776 67788999
Q ss_pred EeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccCCcc
Q 012418 216 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 290 (464)
Q Consensus 216 fIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRpGRf 290 (464)
|||||+.+.+.+.... ....+.++|..++. ...+.+|++||.++ .+|+||.| ||
T Consensus 283 fIDEIh~L~g~g~~~~----g~~d~~nlLkp~L~---------------~g~i~vIgATt~~E~~~~~~~D~AL~r--RF 341 (758)
T PRK11034 283 FIDEIHTIIGAGAASG----GQVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR--RF 341 (758)
T ss_pred EeccHHHHhccCCCCC----cHHHHHHHHHHHHh---------------CCCeEEEecCChHHHHHHhhccHHHHh--hC
Confidence 9999999987653111 11223334433332 45689999999875 58999999 99
Q ss_pred eEEEeC--CCHHHHHHHHHhhc----CCCCCC--hh---HHHHHhcC------CChhhHHHHH
Q 012418 291 EKFYWA--PTREDRIGVCSGIF----RTDNVP--KE---DIVKLVDT------FPGQSIDFFG 336 (464)
Q Consensus 291 D~~i~i--P~~eeR~eIl~~~~----~~~~v~--~~---~la~lt~g------fsgadLd~~~ 336 (464)
+. +.+ |+.+++.+|++.+. ...++. .+ .++.++.. +|+..++++.
T Consensus 342 q~-I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlld 403 (758)
T PRK11034 342 QK-IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVID 403 (758)
T ss_pred cE-EEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHH
Confidence 75 554 99999999987543 233444 33 33444444 3555677664
No 60
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.40 E-value=1.2e-12 Score=148.85 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=92.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh----------CCC-------------CCCCChHHHHHHHHHHHHHHHHhCCcEEE
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM----------GIN-------------GNAGEPAKLIRQRYREAADIIKKGKMCCL 215 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el----------g~~-------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~IL 215 (464)
...++|+||||||||++|+++|..+ +.+ ++.|+.++.++.+|... .+...++||
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~---~~~~~~~IL 275 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL---AKQEGNVIL 275 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHH---HHcCCCeEE
Confidence 3467899999999999999999997 322 57788888888888765 134678999
Q ss_pred EeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccCCcc
Q 012418 216 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 290 (464)
Q Consensus 216 fIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRpGRf 290 (464)
|||||+.+.+......... ...+|.. . -.++.+.+|+||+..+ .+|+||.| ||
T Consensus 276 fIDEih~l~~~~~~~~~~d-----~~~~lkp------------~---l~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf 333 (857)
T PRK10865 276 FIDELHTMVGAGKADGAMD-----AGNMLKP------------A---LARGELHCVGATTLDEYRQYIEKDAALER--RF 333 (857)
T ss_pred EEecHHHhccCCCCccchh-----HHHHhcc------------h---hhcCCCeEEEcCCCHHHHHHhhhcHHHHh--hC
Confidence 9999999987643211111 1222211 1 2346789999999987 48999999 99
Q ss_pred eEEEe-CCCHHHHHHHHHhhc
Q 012418 291 EKFYW-APTREDRIGVCSGIF 310 (464)
Q Consensus 291 D~~i~-iP~~eeR~eIl~~~~ 310 (464)
+.++. .|+.+++.+|++.+.
T Consensus 334 ~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 334 QKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CEEEeCCCCHHHHHHHHHHHh
Confidence 86444 399999999987654
No 61
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=3.3e-12 Score=136.28 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=106.4
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..++..+++.+... +.|..+|||||||||||++|+++|+.++...
T Consensus 16 ~f~dvVGQ---------e~iv~~L~~~i~~~--ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i 84 (484)
T PRK14956 16 FFRDVIHQ---------DLAIGALQNALKSG--KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEI 84 (484)
T ss_pred CHHHHhCh---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHH
Confidence 45666665 22333445555433 4577899999999999999999999987630
Q ss_pred ------CC-------CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 188 ------NA-------GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 188 ------~~-------Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
.+ ......+|++...+......++..|+||||+|.+.. ...+++| ..++
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~------------~A~NALL-KtLE----- 146 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD------------QSFNALL-KTLE----- 146 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH------------HHHHHHH-HHhh-----
Confidence 00 112344566555542222255678999999997732 1234444 3333
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC-CCHHHHHHHHHhhcCCCCCC--hh---HHHHHhcCCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCSGIFRTDNVP--KE---DIVKLVDTFP 328 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i-P~~eeR~eIl~~~~~~~~v~--~~---~la~lt~gfs 328 (464)
+....+.+|++|+.+..|+++++. ||-.+..- ++.++..+.++.+...+++. .+ .|++.++|-.
T Consensus 147 --------EPp~~viFILaTte~~kI~~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 147 --------EPPAHIVFILATTEFHKIPETILS--RCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred --------cCCCceEEEeecCChhhccHHHHh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChH
Confidence 344567888899999999999997 77654442 66666666666666555553 22 4555555544
Q ss_pred hhhH
Q 012418 329 GQSI 332 (464)
Q Consensus 329 gadL 332 (464)
-..|
T Consensus 217 RdAL 220 (484)
T PRK14956 217 RDML 220 (484)
T ss_pred HHHH
Confidence 3333
No 62
>PRK04195 replication factor C large subunit; Provisional
Probab=99.39 E-value=5.6e-12 Score=135.01 Aligned_cols=144 Identities=19% Similarity=0.206 Sum_probs=93.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC---CCCCC--hHHHHHHHHHHHHHHHH-h-CCcEEEEeccccccccCCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN---GNAGE--PAKLIRQRYREAADIIK-K-GKMCCLFINDLDAGAGRMGG 229 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~---~~~Ge--~~k~Ir~~F~~A~~~~~-~-~~P~ILfIDEIDal~~~r~~ 229 (464)
.+++.+|||||||||||++|+++|++++.+ ....+ ....++.+...+..... . ..+.||||||+|.+.+...
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d- 115 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED- 115 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-
Confidence 448899999999999999999999999977 22222 12344444444422211 1 2678999999998865311
Q ss_pred CCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCch-hhccCCcceEEEeC--CCHHHHHHHH
Q 012418 230 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWA--PTREDRIGVC 306 (464)
Q Consensus 230 ~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDp-ALlRpGRfD~~i~i--P~~eeR~eIl 306 (464)
. ..+ ..|.+++. ..+.+||++||++..+++ +|.+ |+.. +.+ |+.+++..++
T Consensus 116 --~-----~~~-~aL~~~l~---------------~~~~~iIli~n~~~~~~~k~Lrs--r~~~-I~f~~~~~~~i~~~L 169 (482)
T PRK04195 116 --R-----GGA-RAILELIK---------------KAKQPIILTANDPYDPSLRELRN--ACLM-IEFKRLSTRSIVPVL 169 (482)
T ss_pred --h-----hHH-HHHHHHHH---------------cCCCCEEEeccCccccchhhHhc--cceE-EEecCCCHHHHHHHH
Confidence 1 111 23434443 234589999999999988 5554 4433 443 8899999998
Q ss_pred HhhcCCCCC--ChhHHHHHhcCC
Q 012418 307 SGIFRTDNV--PKEDIVKLVDTF 327 (464)
Q Consensus 307 ~~~~~~~~v--~~~~la~lt~gf 327 (464)
+.++...++ +.+.+..++...
T Consensus 170 ~~i~~~egi~i~~eaL~~Ia~~s 192 (482)
T PRK04195 170 KRICRKEGIECDDEALKEIAERS 192 (482)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc
Confidence 888766554 444454444443
No 63
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3.7e-12 Score=139.51 Aligned_cols=173 Identities=13% Similarity=0.181 Sum_probs=116.9
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------CC----
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING----------NA---- 189 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~----------~~---- 189 (464)
+|++++|. ..++..+++++... +.+..+||+||+|||||++|+++|+.++... -.
T Consensus 14 tFddVIGQ---------e~vv~~L~~al~~g--RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 14 DFTTLVGQ---------EHVVRALTHALEQQ--RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred cHHHHcCc---------HHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 56788876 33445556666533 5688999999999999999999999998620 00
Q ss_pred --------------------CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhc
Q 012418 190 --------------------GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249 (464)
Q Consensus 190 --------------------Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD 249 (464)
......||++.+.+...-..++..|+||||+|.+-. ...|.+| ..++
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~------------~AaNALL-KTLE 149 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN------------HAFNAML-KTLE 149 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH------------HHHHHHH-Hhhc
Confidence 112345666666552222356678999999997732 2234433 4444
Q ss_pred CCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe-CCCHHHHHHHHHhhcCCCCCChh-----HHHHH
Q 012418 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKE-----DIVKL 323 (464)
Q Consensus 250 ~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~v~~~-----~la~l 323 (464)
+...++.+|++||+++.|.+.++. ||-++.. .++.++..+.++.++..+++..+ .|++.
T Consensus 150 -------------EPP~~v~FILaTtep~kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 150 -------------EPPEHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred -------------cCCCCceEEEEeCChHhhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 445678899999999999999987 6654333 27888888888777665555432 46777
Q ss_pred hcCCChhhHHHH
Q 012418 324 VDTFPGQSIDFF 335 (464)
Q Consensus 324 t~gfsgadLd~~ 335 (464)
++|-....+.++
T Consensus 215 A~Gs~RdALsLL 226 (700)
T PRK12323 215 AQGSMRDALSLT 226 (700)
T ss_pred cCCCHHHHHHHH
Confidence 777666665543
No 64
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.38 E-value=5.7e-12 Score=142.98 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=110.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC----------CC-------------CCCCChHHHHHHHHHHHHHHHHhCCc
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG----------IN-------------GNAGEPAKLIRQRYREAADIIKKGKM 212 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg----------~~-------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P 212 (464)
-+.+..++|+||||||||++|+.+|..+. .. +|.|+.+..++.+++.+ +...+
T Consensus 197 r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~----~~~~~ 272 (821)
T CHL00095 197 RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEI----QENNN 272 (821)
T ss_pred ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHH----HhcCC
Confidence 34556889999999999999999999863 11 67888899999999888 66789
Q ss_pred EEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccC
Q 012418 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRD 287 (464)
Q Consensus 213 ~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRp 287 (464)
+|||||||+.+.+..+.... . .+..+|...+ .++.+.+|++|+..+ ..|++|.|
T Consensus 273 ~ILfiDEih~l~~~g~~~g~--~---~~a~lLkp~l---------------~rg~l~~IgaTt~~ey~~~ie~D~aL~r- 331 (821)
T CHL00095 273 IILVIDEVHTLIGAGAAEGA--I---DAANILKPAL---------------ARGELQCIGATTLDEYRKHIEKDPALER- 331 (821)
T ss_pred eEEEEecHHHHhcCCCCCCc--c---cHHHHhHHHH---------------hCCCcEEEEeCCHHHHHHHHhcCHHHHh-
Confidence 99999999999876431111 1 1222332221 245688999998764 58999998
Q ss_pred CcceEEEe-CCCHHHHHHHHHhhc------CCCCCChh---HHHHHhcCC------ChhhHHHHHHHHh
Q 012418 288 GRMEKFYW-APTREDRIGVCSGIF------RTDNVPKE---DIVKLVDTF------PGQSIDFFGALRA 340 (464)
Q Consensus 288 GRfD~~i~-iP~~eeR~eIl~~~~------~~~~v~~~---~la~lt~gf------sgadLd~~~alra 340 (464)
||..+.. .|+.++...|++.+. ..-.++.+ .++.++.+| |+-.|+++-...+
T Consensus 332 -Rf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 332 -RFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred -cceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 8876433 399999988865432 12225544 666777775 5557777643333
No 65
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.2e-11 Score=139.18 Aligned_cols=173 Identities=14% Similarity=0.194 Sum_probs=114.2
Q ss_pred cccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCC-----CC-------
Q 012418 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGN-----AG------- 190 (464)
Q Consensus 123 ~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~-----~G------- 190 (464)
-+|++++|. ..++..+++++... +.|..+|||||||||||++|+++|++++.... +|
T Consensus 13 ~tFddIIGQ---------e~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 13 ATFEQMVGQ---------SHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred CCHHHhcCc---------HHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 356788886 34445566666533 66889999999999999999999999876410 01
Q ss_pred -----------------ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCc
Q 012418 191 -----------------EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 253 (464)
Q Consensus 191 -----------------e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~ 253 (464)
.....||++...+...-..++..|+||||+|.+-. ...+ .|+..+.
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~------------eAqN-ALLKtLE---- 144 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR------------SSFN-ALLKTLE---- 144 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH------------HHHH-HHHHHHh----
Confidence 12344666655542222245678999999997732 1223 3444554
Q ss_pred ccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCChh-----HHHHHhcC
Q 012418 254 VQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKE-----DIVKLVDT 326 (464)
Q Consensus 254 v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~~~-----~la~lt~g 326 (464)
+....+.+|++|+.+..|.+.++. ||-+ |.+ ++.++..+.++.++..+++..+ .|++.+.|
T Consensus 145 ---------EPP~~vrFILaTTe~~kLl~TIlS--RCq~-f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G 212 (944)
T PRK14949 145 ---------EPPEHVKFLLATTDPQKLPVTVLS--RCLQ-FNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG 212 (944)
T ss_pred ---------ccCCCeEEEEECCCchhchHHHHH--hheE-EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 444567788888899999999887 6644 444 6788888777777655555433 56667777
Q ss_pred CChhhHHHH
Q 012418 327 FPGQSIDFF 335 (464)
Q Consensus 327 fsgadLd~~ 335 (464)
-.+..+.++
T Consensus 213 d~R~ALnLL 221 (944)
T PRK14949 213 SMRDALSLT 221 (944)
T ss_pred CHHHHHHHH
Confidence 666555543
No 66
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2e-11 Score=130.69 Aligned_cols=162 Identities=13% Similarity=0.158 Sum_probs=101.2
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 186 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------- 186 (464)
+|+.++|.. .+...+++.+... +.|..+|||||||||||++|+++|++++..
T Consensus 12 ~~~divGq~---------~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i 80 (472)
T PRK14962 12 TFSEVVGQD---------HVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSI 80 (472)
T ss_pred CHHHccCcH---------HHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHH
Confidence 457777762 2233444444433 567889999999999999999999998752
Q ss_pred ------------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 187 ------------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 187 ------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
.-.......+|++...+...-......||||||+|.+... ..+ .|+..++
T Consensus 81 ~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~------------a~~-~LLk~LE----- 142 (472)
T PRK14962 81 DEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE------------AFN-ALLKTLE----- 142 (472)
T ss_pred hcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH------------HHH-HHHHHHH-----
Confidence 0012234456665555421112345679999999876321 122 3444444
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCC--CChhHHHHHhc
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN--VPKEDIVKLVD 325 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~--v~~~~la~lt~ 325 (464)
.....+.+|++||.+..|++++++ |+.. +.+ |+.++...+++......+ ++.+.+..++.
T Consensus 143 --------~p~~~vv~Ilattn~~kl~~~L~S--R~~v-v~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~ 206 (472)
T PRK14962 143 --------EPPSHVVFVLATTNLEKVPPTIIS--RCQV-IEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK 206 (472)
T ss_pred --------hCCCcEEEEEEeCChHhhhHHHhc--CcEE-EEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 233456677777788899999997 5543 444 788888888877765544 44444444443
No 67
>PRK06893 DNA replication initiation factor; Validated
Probab=99.37 E-value=2.5e-12 Score=124.91 Aligned_cols=142 Identities=17% Similarity=0.160 Sum_probs=85.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC----CCCCCh--HHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCcc
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN----GNAGEP--AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 233 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~----~~~Ge~--~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~ 233 (464)
..++||||||||||+|++++|+++... .|+.-. .....+.++. ..+..+|+||||+.+.+...
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~------~~~~dlLilDDi~~~~~~~~----- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLEN------LEQQDLVCLDDLQAVIGNEE----- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhh------cccCCEEEEeChhhhcCChH-----
Confidence 368999999999999999999997432 111111 1111111111 23467999999998865422
Q ss_pred chhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeC-CCCCCc---hhhccCCcceEEEeC--CCHHHHHHHHH
Q 012418 234 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-DFSTLY---APLIRDGRMEKFYWA--PTREDRIGVCS 307 (464)
Q Consensus 234 ~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN-~~~~LD---pALlRpGRfD~~i~i--P~~eeR~eIl~ 307 (464)
....|+++++ .. ......+||+|+| .|..++ +.|.++.+....+.+ |+.++|.+|++
T Consensus 109 ------~~~~l~~l~n---------~~--~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 109 ------WELAIFDLFN---------RI--KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred ------HHHHHHHHHH---------HH--HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 1123444444 10 1112234455554 466665 888886666677765 99999999988
Q ss_pred hhcCCCC--CChhHHHHHhcCCCh
Q 012418 308 GIFRTDN--VPKEDIVKLVDTFPG 329 (464)
Q Consensus 308 ~~~~~~~--v~~~~la~lt~gfsg 329 (464)
......+ ++.+.+.-++..+++
T Consensus 172 ~~a~~~~l~l~~~v~~~L~~~~~~ 195 (229)
T PRK06893 172 RNAYQRGIELSDEVANFLLKRLDR 195 (229)
T ss_pred HHHHHcCCCCCHHHHHHHHHhccC
Confidence 7665444 455555555555554
No 68
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.36 E-value=5.3e-12 Score=143.74 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=105.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh----------CCC-------------CCCCChHHHHHHHHHHHHHHHH-hCCcE
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GIN-------------GNAGEPAKLIRQRYREAADIIK-KGKMC 213 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el----------g~~-------------~~~Ge~~k~Ir~~F~~A~~~~~-~~~P~ 213 (464)
....++|+||||||||++++++|..+ +.+ ++.|+.++.++.+|..+ . ...|+
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~----~~~~~~~ 268 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEV----TKSEGQI 268 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHH----HhcCCCe
Confidence 34567899999999999999999986 222 46677777888888766 4 35699
Q ss_pred EEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccCC
Q 012418 214 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDG 288 (464)
Q Consensus 214 ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRpG 288 (464)
|||||||+.+.+....... .-...+|... -....+.+|++||..+ .+|+||.|
T Consensus 269 ILfIDEih~l~~~g~~~~~-----~d~~~~Lk~~---------------l~~g~i~~IgaTt~~e~r~~~~~d~al~r-- 326 (852)
T TIGR03346 269 ILFIDELHTLVGAGKAEGA-----MDAGNMLKPA---------------LARGELHCIGATTLDEYRKYIEKDAALER-- 326 (852)
T ss_pred EEEeccHHHhhcCCCCcch-----hHHHHHhchh---------------hhcCceEEEEeCcHHHHHHHhhcCHHHHh--
Confidence 9999999999764331111 1122223111 2345688999999874 58999999
Q ss_pred cceEEEe-CCCHHHHHHHHHhhcC----CCCC--Chh---HHHHHhcCC------ChhhHHHHHHHH
Q 012418 289 RMEKFYW-APTREDRIGVCSGIFR----TDNV--PKE---DIVKLVDTF------PGQSIDFFGALR 339 (464)
Q Consensus 289 RfD~~i~-iP~~eeR~eIl~~~~~----~~~v--~~~---~la~lt~gf------sgadLd~~~alr 339 (464)
||..++. .|+.+++.+|++.+.. ..++ ..+ .++.++.+| |..+||++...+
T Consensus 327 Rf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~ 393 (852)
T TIGR03346 327 RFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAA 393 (852)
T ss_pred cCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHH
Confidence 8976433 3999999999775522 2233 322 556777766 555777664333
No 69
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.35 E-value=1.3e-11 Score=130.04 Aligned_cols=91 Identities=18% Similarity=0.299 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC------------CCCCChHH-HHHHHHHHHHHHHHhCCcEEEEecccccccc
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN------------GNAGEPAK-LIRQRYREAADIIKKGKMCCLFINDLDAGAG 225 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~Ge~~k-~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~ 225 (464)
...+||+||||||||++|+++|+.++.+ .|+|+... .+..++..+...+....++||||||||++..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 4789999999999999999999999876 46666433 3455554432233456789999999999976
Q ss_pred CCCC-CCccchhhHHHHHHHHhhhc
Q 012418 226 RMGG-TTQYTVNNQMVNATLMNIAD 249 (464)
Q Consensus 226 ~r~~-~~~~~~~~~~v~~~L~~llD 249 (464)
...+ .....+....+++.|+++++
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Le 212 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILE 212 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHh
Confidence 5321 11223344467888888887
No 70
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.35 E-value=1.1e-11 Score=124.72 Aligned_cols=132 Identities=19% Similarity=0.283 Sum_probs=86.3
Q ss_pred HHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC---CCC--CChHHHHHHHHHHHHHHHH-hCCcEEEEecc
Q 012418 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN---GNA--GEPAKLIRQRYREAADIIK-KGKMCCLFIND 219 (464)
Q Consensus 146 i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~---~~~--Ge~~k~Ir~~F~~A~~~~~-~~~P~ILfIDE 219 (464)
.++.+.+. -+.|..+||+||||+|||++|+++|++++.+ ... +. ...+++.......... ...+.||||||
T Consensus 32 ~l~~~~~~--~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe 108 (316)
T PHA02544 32 TFKSIVKK--GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCR-IDFVRNRLTRFASTVSLTGGGKVIIIDE 108 (316)
T ss_pred HHHHHHhc--CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCccc-HHHHHHHHHHHHHhhcccCCCeEEEEEC
Confidence 34444442 3467888889999999999999999998765 111 22 2333332222211111 24688999999
Q ss_pred ccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe-CCC
Q 012418 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APT 298 (464)
Q Consensus 220 IDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~-iP~ 298 (464)
+|.+... ..+..|.++++ ....++++|+|||.++.+++++++ ||..+.. .|+
T Consensus 109 ~d~l~~~------------~~~~~L~~~le-------------~~~~~~~~Ilt~n~~~~l~~~l~s--R~~~i~~~~p~ 161 (316)
T PHA02544 109 FDRLGLA------------DAQRHLRSFME-------------AYSKNCSFIITANNKNGIIEPLRS--RCRVIDFGVPT 161 (316)
T ss_pred cccccCH------------HHHHHHHHHHH-------------hcCCCceEEEEcCChhhchHHHHh--hceEEEeCCCC
Confidence 9876211 12334555454 233557899999999999999987 7765444 599
Q ss_pred HHHHHHHHH
Q 012418 299 REDRIGVCS 307 (464)
Q Consensus 299 ~eeR~eIl~ 307 (464)
.+++.++++
T Consensus 162 ~~~~~~il~ 170 (316)
T PHA02544 162 KEEQIEMMK 170 (316)
T ss_pred HHHHHHHHH
Confidence 999987754
No 71
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.3e-11 Score=135.59 Aligned_cols=165 Identities=13% Similarity=0.173 Sum_probs=108.3
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..+...+++.+. .-+.+..+||+||||||||++|+++|+++++..
T Consensus 13 tFddVIGQ---------e~vv~~L~~aI~--~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 13 NFNELVGQ---------NHVSRALSSALE--RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred CHHHhcCc---------HHHHHHHHHHHH--cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 56777776 333455556555 335678999999999999999999999987620
Q ss_pred -----------CC--CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 188 -----------NA--GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 188 -----------~~--Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
.. ......||++...+...-..++..|+||||+|.+-.. ..+ .|+..++
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~------------A~N-ALLKtLE----- 143 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH------------SFN-ALLKTLE----- 143 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH------------HHH-HHHHHHh-----
Confidence 00 1123456666555422112456789999999976321 122 3444554
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC-CCHHHHHHHHHhhcCCCCCChh-----HHHHHhcCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCSGIFRTDNVPKE-----DIVKLVDTF 327 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i-P~~eeR~eIl~~~~~~~~v~~~-----~la~lt~gf 327 (464)
+....+.+|++||++..++++++. |+.++-.- ++.++..+.++.++..+++..+ .|++.+.|=
T Consensus 144 --------EPP~~v~FILaTtd~~kIp~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~Gd 212 (702)
T PRK14960 144 --------EPPEHVKFLFATTDPQKLPITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGS 212 (702)
T ss_pred --------cCCCCcEEEEEECChHhhhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 334567888899999999999886 77553332 7888888888888776655533 455555553
No 72
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=1.3e-11 Score=136.18 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=109.7
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..++..+++++.. -+.|.++||+||||||||++|+++|++++...
T Consensus 14 tFddIIGQ---------e~vv~~L~~ai~~--~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 14 TFADLVGQ---------EHVVKALQNALDE--GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred CHHHHcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 45777776 3445566666653 36688999999999999999999999986530
Q ss_pred -------------CCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 188 -------------NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 188 -------------~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
..+.....||+++..+...-...+..||||||+|.+.. ...+. |+..++
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~------------~A~NA-LLKtLE----- 144 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK------------SAFNA-MLKTLE----- 144 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH------------HHHHH-HHHHHH-----
Confidence 01123345777766542111245678999999986521 12333 334444
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe-CCCHHHHHHHHHhhcCCCCCChh-----HHHHHhcCCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKE-----DIVKLVDTFP 328 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~v~~~-----~la~lt~gfs 328 (464)
+....+.+|++||++..|.+.++. ||-.+-. -++.++..+.++.++..+++..+ .|++.+.|=.
T Consensus 145 --------EPp~~v~fILaTtd~~kL~~TIrS--RC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gsl 214 (709)
T PRK08691 145 --------EPPEHVKFILATTDPHKVPVTVLS--RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSM 214 (709)
T ss_pred --------hCCCCcEEEEEeCCccccchHHHH--HHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCH
Confidence 334567889999999999999874 7754322 27888888888888887765533 4455554433
No 73
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=3.2e-11 Score=124.82 Aligned_cols=170 Identities=14% Similarity=0.175 Sum_probs=105.3
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-CC--------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-GN-------------- 188 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-~~-------------- 188 (464)
+|++++|. ..++..+++.+... +.|..+||+||||||||++|+++|+++... .+
T Consensus 14 ~~~~iiGq---------~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 14 YFRDIIGQ---------KHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred chhhccCh---------HHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 46777776 33344455555432 568899999999999999999999998642 00
Q ss_pred ----------C-C---ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 189 ----------A-G---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 189 ----------~-G---e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
. + .....++++...+...-..+...|+||||+|.+.. ...+. |+..++
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~------------~a~na-LLk~lE----- 144 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR------------HSFNA-LLKTLE----- 144 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH------------HHHHH-HHHHHh-----
Confidence 0 0 12234555554431000134567999999987632 12233 333343
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCC--CChh---HHHHHhcCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN--VPKE---DIVKLVDTF 327 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~--v~~~---~la~lt~gf 327 (464)
+....+.+|++|++++.|++++.. |+-. +.+ |+.++..++++.++...+ ++.+ .|++.+.|-
T Consensus 145 --------e~~~~~~fIl~t~~~~~l~~tI~S--Rc~~-~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~ 213 (363)
T PRK14961 145 --------EPPQHIKFILATTDVEKIPKTILS--RCLQ-FKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGS 213 (363)
T ss_pred --------cCCCCeEEEEEcCChHhhhHHHHh--hceE-EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 233456778888889999999876 6633 454 789999999888776655 4444 345555554
Q ss_pred ChhhHH
Q 012418 328 PGQSID 333 (464)
Q Consensus 328 sgadLd 333 (464)
....+.
T Consensus 214 ~R~al~ 219 (363)
T PRK14961 214 MRDALN 219 (363)
T ss_pred HHHHHH
Confidence 444333
No 74
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.32 E-value=2.3e-11 Score=125.93 Aligned_cols=118 Identities=20% Similarity=0.230 Sum_probs=86.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC----CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccch
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTV 235 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~----~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~ 235 (464)
-.++||||||||||+||+.||+.++.+ .-+-...+.||+++++|......++..|||||||..+-.. |
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-----Q--- 120 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-----Q--- 120 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-----h---
Confidence 368899999999999999999999988 4445567889999999966666778899999999744222 2
Q ss_pred hhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEe--CCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHh
Q 012418 236 NNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSG 308 (464)
Q Consensus 236 ~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTT--N~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~ 308 (464)
+.+|+-. .++..|.+|+|| |..-.|-+||+.+.| . +.+ -+.++..++++.
T Consensus 121 -----QD~lLp~---------------vE~G~iilIGATTENPsF~ln~ALlSR~~--v-f~lk~L~~~di~~~l~r 174 (436)
T COG2256 121 -----QDALLPH---------------VENGTIILIGATTENPSFELNPALLSRAR--V-FELKPLSSEDIKKLLKR 174 (436)
T ss_pred -----hhhhhhh---------------hcCCeEEEEeccCCCCCeeecHHHhhhhh--e-eeeecCCHHHHHHHHHH
Confidence 1234322 234556667654 666689999998555 2 333 688888777766
No 75
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.32 E-value=1.8e-11 Score=128.75 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=82.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC----CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccch
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTV 235 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~----~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~ 235 (464)
..+|||||||||||++|+++|+.++.. .......+.+++++..+......++..||||||+|.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~--------- 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA--------- 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH---------
Confidence 478999999999999999999998876 2223345567778877754444557899999999975321
Q ss_pred hhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEe--CCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcC
Q 012418 236 NNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311 (464)
Q Consensus 236 ~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTT--N~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~ 311 (464)
....|+..++ ...+.+|++| |....++++|++ ||. .+.+ |+.++..++++..+.
T Consensus 108 ----~q~~LL~~le---------------~~~iilI~att~n~~~~l~~aL~S--R~~-~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 108 ----QQDALLPHVE---------------DGTITLIGATTENPSFEVNPALLS--RAQ-VFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred ----HHHHHHHHhh---------------cCcEEEEEeCCCChhhhccHHHhc--cce-eeEeCCCCHHHHHHHHHHHHH
Confidence 1123433333 1335556554 445589999998 563 3444 788888888776653
No 76
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.31 E-value=2.6e-11 Score=126.88 Aligned_cols=177 Identities=18% Similarity=0.206 Sum_probs=101.4
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC-----CC-CCCCChHH
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG-----IN-GNAGEPAK 194 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg-----~~-~~~Ge~~k 194 (464)
..|+|++.+.+. ....+...++.+...++ .....++||||||+|||+|++++++++. .. .|+. ...
T Consensus 105 ~~~tfd~fi~g~------~n~~a~~~~~~~~~~~~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGK------SNRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-SEK 176 (405)
T ss_pred CCCcccccccCC------cHHHHHHHHHHHHhCcC-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-HHH
Confidence 467888855331 12335566777766554 3346799999999999999999999973 22 1221 122
Q ss_pred HHHHHHHHH----H-HHH-HhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCc
Q 012418 195 LIRQRYREA----A-DII-KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268 (464)
Q Consensus 195 ~Ir~~F~~A----~-~~~-~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V 268 (464)
...+..... . ... ....+.+|+|||||.+.++.. . ...|+.+++ . ....+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~--~---------~~~l~~~~n---------~---~~~~~~ 233 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER--T---------QEEFFHTFN---------A---LHENGK 233 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHH--H---------HHHHHHHHH---------H---HHHCCC
Confidence 221111110 0 000 122367999999998865422 1 122333333 0 001123
Q ss_pred eEEEEeCC-CCC---CchhhccCCcceE--EEeC--CCHHHHHHHHHhhcCCCC--CChhHHHHHhcCCChh
Q 012418 269 PIIVTGND-FST---LYAPLIRDGRMEK--FYWA--PTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQ 330 (464)
Q Consensus 269 ~VIaTTN~-~~~---LDpALlRpGRfD~--~i~i--P~~eeR~eIl~~~~~~~~--v~~~~la~lt~gfsga 330 (464)
++|+|+|. |+. +++.|.. ||.. .+.+ |+.++|.+|++......+ ++.+.+..++..+.+.
T Consensus 234 ~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~ 303 (405)
T TIGR00362 234 QIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSN 303 (405)
T ss_pred CEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 45666654 444 5577765 7753 4454 999999999988776544 4555655666665543
No 77
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.31 E-value=1e-11 Score=130.43 Aligned_cols=90 Identities=21% Similarity=0.233 Sum_probs=64.8
Q ss_pred CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeC----CCCCCchhhcc
Q 012418 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN----DFSTLYAPLIR 286 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN----~~~~LDpALlR 286 (464)
+..||||||||+++.+.. .....++..-|++-|+.++..... .. .+......+|.+||+.- .|++|=|.|.
T Consensus 247 ~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkilEGt~v-~~--k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~- 321 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIVEGSTV-NT--KYGMVKTDHILFIAAGAFQLAKPSDLIPELQ- 321 (441)
T ss_pred cCCEEEEEchhhhcccCC-CCCCCCCccchhccccccccCcee-ee--cceeEECCceeEEecCCcCCCChhhccHHHh-
Confidence 456999999999987653 234456677788889888874322 11 11224557788888663 5777888887
Q ss_pred CCcceEEEeC--CCHHHHHHHH
Q 012418 287 DGRMEKFYWA--PTREDRIGVC 306 (464)
Q Consensus 287 pGRfD~~i~i--P~~eeR~eIl 306 (464)
|||-....+ ++.++...|+
T Consensus 322 -GR~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 322 -GRFPIRVELQALTTDDFERIL 342 (441)
T ss_pred -CccceEEECCCCCHHHHHHHh
Confidence 899999887 8999999885
No 78
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=5.4e-11 Score=134.61 Aligned_cols=154 Identities=12% Similarity=0.133 Sum_probs=101.5
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|+.++|. ..++..+++++.. -+.+..+|||||+|||||++|+++|+.|++..
T Consensus 13 ~f~eiiGq---------e~v~~~L~~~i~~--~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~ 81 (824)
T PRK07764 13 TFAEVIGQ---------EHVTEPLSTALDS--GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVAL 81 (824)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHH
Confidence 56777775 3344455666553 35678999999999999999999999997520
Q ss_pred ------------CCC---ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCC
Q 012418 188 ------------NAG---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 252 (464)
Q Consensus 188 ------------~~G---e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~ 252 (464)
.-+ .....||++-..+.-.-...+..|+||||+|.+-.. .. ..|+.+++
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~------------a~-NaLLK~LE--- 145 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ------------GF-NALLKIVE--- 145 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH------------HH-HHHHHHHh---
Confidence 000 123445554444321112567789999999987321 12 24555555
Q ss_pred cccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe-CCCHHHHHHHHHhhcCCCCCC
Q 012418 253 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP 316 (464)
Q Consensus 253 ~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~v~ 316 (464)
+....+.+|++|+.++.|.+.|+. |+-.+-. .++.++..+++..++..+++.
T Consensus 146 ----------EpP~~~~fIl~tt~~~kLl~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 146 ----------EPPEHLKFIFATTEPDKVIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred ----------CCCCCeEEEEEeCChhhhhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 344556778888888999999876 5543222 378888888888888776664
No 79
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.28 E-value=5.9e-11 Score=126.25 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=107.7
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhhhhCCC---CCCCcEEEEEcCCCccHHHHHHHHHHHhC---CC-CCCCChH
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPN---VKVPLILGIWGGKGQGKSFQCELVFAKMG---IN-GNAGEPA 193 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~g---i~~p~GLLL~GPPGtGKT~LAkaIA~elg---~~-~~~Ge~~ 193 (464)
..|+|+|.+-+. ..+.+...++.+...++ -.....++||||||+|||+|++++++++. .. .|+. .+
T Consensus 106 ~~~tFdnFv~g~------~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~~ 178 (445)
T PRK12422 106 PLMTFANFLVTP------ENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-SE 178 (445)
T ss_pred ccccccceeeCC------cHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-HH
Confidence 467889887541 12334455566554221 12336799999999999999999999874 22 1221 11
Q ss_pred HHH---HHHHHH-HHHHHH--hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCC
Q 012418 194 KLI---RQRYRE-AADIIK--KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267 (464)
Q Consensus 194 k~I---r~~F~~-A~~~~~--~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~ 267 (464)
... ...++. ..+..+ ...+.||+||||+.+.++.. .+ ..+-.++..+.+ .+
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~--~q-----eelf~l~N~l~~----------------~~ 235 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGA--TQ-----EEFFHTFNSLHT----------------EG 235 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChh--hH-----HHHHHHHHHHHH----------------CC
Confidence 111 111110 001111 34578999999998765422 11 222222211111 12
Q ss_pred ceEEEEeCCC----CCCchhhccCCcce--EEEeC--CCHHHHHHHHHhhcCCCC--CChhHHHHHhcCCChhhHHHHHH
Q 012418 268 VPIIVTGNDF----STLYAPLIRDGRME--KFYWA--PTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSIDFFGA 337 (464)
Q Consensus 268 V~VIaTTN~~----~~LDpALlRpGRfD--~~i~i--P~~eeR~eIl~~~~~~~~--v~~~~la~lt~gfsgadLd~~~a 337 (464)
.+||+|||.+ ..+++.|.+ ||. ..+.+ |+.++|.+|++......+ ++.+.+.-++..+++.--+..++
T Consensus 236 k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~ 313 (445)
T PRK12422 236 KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHA 313 (445)
T ss_pred CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 3688888764 456788887 674 55665 999999999887765544 55556666777777543333344
Q ss_pred HH
Q 012418 338 LR 339 (464)
Q Consensus 338 lr 339 (464)
|.
T Consensus 314 l~ 315 (445)
T PRK12422 314 LT 315 (445)
T ss_pred HH
Confidence 43
No 80
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.28 E-value=4.2e-11 Score=127.12 Aligned_cols=186 Identities=19% Similarity=0.205 Sum_probs=108.1
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC-----C-CCCCChHH
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----N-GNAGEPAK 194 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~-----~-~~~Ge~~k 194 (464)
..|+|+|.+.+. ..+.+...++.+...++. ....++||||||||||+|++++++++.. . .|+. ...
T Consensus 117 ~~~tfd~fv~g~------~n~~a~~~~~~~~~~~~~-~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~~~ 188 (450)
T PRK00149 117 PKYTFDNFVVGK------SNRLAHAAALAVAENPGK-AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-SEK 188 (450)
T ss_pred CCCcccccccCC------CcHHHHHHHHHHHhCcCc-cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-HHH
Confidence 567888876441 123456667777665542 3356999999999999999999999843 2 1221 111
Q ss_pred HHHHHHHHH----H-HHH-HhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCc
Q 012418 195 LIRQRYREA----A-DII-KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268 (464)
Q Consensus 195 ~Ir~~F~~A----~-~~~-~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V 268 (464)
...+..... . +.. +...+.+|+|||||.+.++.. . .+.|+.+++ . ....+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~--~---------~~~l~~~~n---------~---l~~~~~ 245 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKER--T---------QEEFFHTFN---------A---LHEAGK 245 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHH--H---------HHHHHHHHH---------H---HHHCCC
Confidence 111111100 0 011 123578999999998865432 1 122333332 0 001122
Q ss_pred eEEEEeCC-CCC---CchhhccCCcce--EEEeC--CCHHHHHHHHHhhcCCC--CCChhHHHHHhcCCChhhHHHHHHH
Q 012418 269 PIIVTGND-FST---LYAPLIRDGRME--KFYWA--PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSIDFFGAL 338 (464)
Q Consensus 269 ~VIaTTN~-~~~---LDpALlRpGRfD--~~i~i--P~~eeR~eIl~~~~~~~--~v~~~~la~lt~gfsgadLd~~~al 338 (464)
++|+|+|. |.. |++.|.. ||. ..+.+ |+.++|.+|++...... .++.+.+..++..+.+.--+..++|
T Consensus 246 ~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l 323 (450)
T PRK00149 246 QIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGAL 323 (450)
T ss_pred cEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHH
Confidence 45666665 344 6677775 775 34554 99999999998877644 4667777777777776533333444
Q ss_pred H
Q 012418 339 R 339 (464)
Q Consensus 339 r 339 (464)
.
T Consensus 324 ~ 324 (450)
T PRK00149 324 N 324 (450)
T ss_pred H
Confidence 3
No 81
>PLN03025 replication factor C subunit; Provisional
Probab=99.28 E-value=2.4e-11 Score=123.40 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=93.6
Q ss_pred HHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC--------CCCCC--hHHHHHHHHHHHHHH---HHh
Q 012418 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------GNAGE--PAKLIRQRYREAADI---IKK 209 (464)
Q Consensus 143 ~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------~~~Ge--~~k~Ir~~F~~A~~~---~~~ 209 (464)
++..++.++..... | .+|||||||||||++|+++|+++... ....+ ....+++........ ...
T Consensus 21 ~~~~L~~~~~~~~~--~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~ 97 (319)
T PLN03025 21 AVSRLQVIARDGNM--P-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPP 97 (319)
T ss_pred HHHHHHHHHhcCCC--c-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCC
Confidence 34445555543333 3 48999999999999999999997322 11111 112344433321110 012
Q ss_pred CCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCc
Q 012418 210 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289 (464)
Q Consensus 210 ~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGR 289 (464)
..+.|+||||+|.+.... .+.|...++ .....+.+|++||..+.+.++|.. |
T Consensus 98 ~~~kviiiDE~d~lt~~a-------------q~aL~~~lE-------------~~~~~t~~il~~n~~~~i~~~L~S--R 149 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-------------QQALRRTME-------------IYSNTTRFALACNTSSKIIEPIQS--R 149 (319)
T ss_pred CCeEEEEEechhhcCHHH-------------HHHHHHHHh-------------cccCCceEEEEeCCccccchhHHH--h
Confidence 457899999999874321 233444444 222334588899999999999987 5
Q ss_pred ceEEEeC--CCHHHHHHHHHhhcCCCCCC--hhHHHHHhcCCC
Q 012418 290 MEKFYWA--PTREDRIGVCSGIFRTDNVP--KEDIVKLVDTFP 328 (464)
Q Consensus 290 fD~~i~i--P~~eeR~eIl~~~~~~~~v~--~~~la~lt~gfs 328 (464)
+. .+.+ |+.++...+++.+...+++. .+.+..++....
T Consensus 150 c~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~ 191 (319)
T PLN03025 150 CA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD 191 (319)
T ss_pred hh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 53 3444 88899988888887766544 555555554443
No 82
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.1e-10 Score=125.87 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=109.9
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCC---------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGN--------------- 188 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~--------------- 188 (464)
+|++++|. ..++..+++.+.. -+.|..+||+||||||||++|+++|++++....
T Consensus 19 ~f~dliGq---------~~vv~~L~~ai~~--~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~ 87 (507)
T PRK06645 19 NFAELQGQ---------EVLVKVLSYTILN--DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN 87 (507)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH
Confidence 45666665 3334445554442 366889999999999999999999999875300
Q ss_pred ------------------CCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcC
Q 012418 189 ------------------AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 250 (464)
Q Consensus 189 ------------------~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~ 250 (464)
.......||++...+...--.++..|+||||+|.+.. ...+.+ +..++
T Consensus 88 C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------~a~naL-Lk~LE- 153 (507)
T PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------GAFNAL-LKTLE- 153 (507)
T ss_pred HHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH------------HHHHHH-HHHHh-
Confidence 0123456777776662221245678999999986632 223333 33333
Q ss_pred CCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCC--hh---HHHHH
Q 012418 251 PTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP--KE---DIVKL 323 (464)
Q Consensus 251 ~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~--~~---~la~l 323 (464)
+....+.+|++|+.++.|+++++. |+-. +.+ ++.++..++++.++..+++. .+ .|++.
T Consensus 154 ------------epp~~~vfI~aTte~~kI~~tI~S--Rc~~-~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 154 ------------EPPPHIIFIFATTEVQKIPATIIS--RCQR-YDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred ------------hcCCCEEEEEEeCChHHhhHHHHh--cceE-EEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 334556777788889999999987 5543 444 88999999988888766654 33 45556
Q ss_pred hcCCChhhHH
Q 012418 324 VDTFPGQSID 333 (464)
Q Consensus 324 t~gfsgadLd 333 (464)
++|-....+.
T Consensus 219 s~GslR~al~ 228 (507)
T PRK06645 219 SEGSARDAVS 228 (507)
T ss_pred cCCCHHHHHH
Confidence 6554444333
No 83
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.27 E-value=2e-11 Score=128.35 Aligned_cols=90 Identities=23% Similarity=0.287 Sum_probs=64.9
Q ss_pred CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEe----CCCCCCchhhcc
Q 012418 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG----NDFSTLYAPLIR 286 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTT----N~~~~LDpALlR 286 (464)
+..||||||||+++.+.+. ....++..-|++-|+.++..... .. .+......+|.+||+. ..|++|-|.|.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~~v-~~--k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~- 323 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGSTV-ST--KYGMVKTDHILFIASGAFHVSKPSDLIPELQ- 323 (443)
T ss_pred cCCEEEEEcchhhcccCCC-CCCCCCccchhccccccccccee-ee--cceeEECCceeEEecCCcCCCChhhccHHHh-
Confidence 4569999999999876542 23466777788889888874322 11 1122455778888865 35777888898
Q ss_pred CCcceEEEeC--CCHHHHHHHH
Q 012418 287 DGRMEKFYWA--PTREDRIGVC 306 (464)
Q Consensus 287 pGRfD~~i~i--P~~eeR~eIl 306 (464)
|||-..+.+ ++.++...|+
T Consensus 324 -GR~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 324 -GRFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred -CccceEEECCCCCHHHHHHHh
Confidence 799999987 8999999885
No 84
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.27 E-value=2.8e-11 Score=127.44 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=74.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC------------CCCCCh-HHHHHHHHHHHHHHHHhCCcEEEEecccccccc
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN------------GNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~Ge~-~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~ 225 (464)
+..+||+||||||||++|+++|..++.+ .|+|+. +..+...++.+...+....++||||||||++..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 3689999999999999999999999876 466764 344444444332223456789999999999987
Q ss_pred CCCC-CCccchhhHHHHHHHHhhhcCCCcccC---CCccccCCCCCceEEEEeCC
Q 012418 226 RMGG-TTQYTVNNQMVNATLMNIADNPTNVQL---PGMYNQEENPRVPIIVTGND 276 (464)
Q Consensus 226 ~r~~-~~~~~~~~~~v~~~L~~llD~~~~v~l---dG~~~~~~~~~V~VIaTTN~ 276 (464)
++.. .....++...+.+.|+++++. ..+.+ .|. .......++|.|+|-
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG-~~~~v~~~~gr--~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEG-TVANVPPQGGR--KHPYQEFIQIDTSNI 247 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhc-cceecccCCCc--cccCCCeEEEEcCCc
Confidence 5431 112223344677788888862 22221 111 122345677888776
No 85
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=7.7e-11 Score=130.05 Aligned_cols=172 Identities=15% Similarity=0.194 Sum_probs=113.9
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..++..+++.+.. -+.+..+|||||||||||++|+++|+.++...
T Consensus 14 ~f~divGQ---------e~vv~~L~~~l~~--~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 14 TFAEVVGQ---------EHVLTALANALDL--GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 56788876 3344455555553 35688999999999999999999999987630
Q ss_pred ----------CCC---ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 188 ----------NAG---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 188 ----------~~G---e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
.-+ .....+|++...+...-..++..|+||||+|.+-. ...|. |+..+.
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~------------~a~NA-LLKtLE----- 144 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNA-LLKTLE----- 144 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH------------HHHHH-HHHHHH-----
Confidence 001 12344666665542221256678999999997632 12233 434444
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCChh-----HHHHHhcCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKE-----DIVKLVDTF 327 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~~~-----~la~lt~gf 327 (464)
+....+.+|++|+++..|.+.++. ||-. |.+ ++.++..+.++.++..+++..+ .|++.++|-
T Consensus 145 --------EPp~~v~FIL~Tt~~~kLl~TI~S--RC~~-~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs 213 (647)
T PRK07994 145 --------EPPEHVKFLLATTDPQKLPVTILS--RCLQ-FHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS 213 (647)
T ss_pred --------cCCCCeEEEEecCCccccchHHHh--hheE-eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 444567788889999999999887 6644 444 7888888888877765555433 567777776
Q ss_pred ChhhHHHH
Q 012418 328 PGQSIDFF 335 (464)
Q Consensus 328 sgadLd~~ 335 (464)
.+..+..+
T Consensus 214 ~R~Al~ll 221 (647)
T PRK07994 214 MRDALSLT 221 (647)
T ss_pred HHHHHHHH
Confidence 66655543
No 86
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=4.9e-11 Score=128.82 Aligned_cols=170 Identities=16% Similarity=0.220 Sum_probs=106.8
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..++..+++++... +.|..+|||||||||||++|+++|+.++...
T Consensus 14 ~f~divGq---------~~v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 14 CFQEVIGQ---------APVVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred CHHHhcCC---------HHHHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 56777876 34455566666533 5688999999999999999999999987630
Q ss_pred -------------CCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 188 -------------NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 188 -------------~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
........+|++...+.-.-..++..|+||||+|.+... ..+. |+..++
T Consensus 83 ~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~------------a~na-LLk~LE----- 144 (509)
T PRK14958 83 DEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH------------SFNA-LLKTLE----- 144 (509)
T ss_pred hcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH------------HHHH-HHHHHh-----
Confidence 001123346665554411111456689999999977432 2333 334444
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC-CCHHHHHHHHHhhcCCCCCChh-----HHHHHhcCCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCSGIFRTDNVPKE-----DIVKLVDTFP 328 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i-P~~eeR~eIl~~~~~~~~v~~~-----~la~lt~gfs 328 (464)
+....+.+|++|+++..+.+.++. |+-.+-.- ++.++..+.+..++..+++..+ .|++.+.|=.
T Consensus 145 --------epp~~~~fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~Gsl 214 (509)
T PRK14958 145 --------EPPSHVKFILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSV 214 (509)
T ss_pred --------ccCCCeEEEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH
Confidence 334457788888999999999876 55443222 5677777767667666655433 3455555433
Q ss_pred hhhH
Q 012418 329 GQSI 332 (464)
Q Consensus 329 gadL 332 (464)
...+
T Consensus 215 R~al 218 (509)
T PRK14958 215 RDAL 218 (509)
T ss_pred HHHH
Confidence 3333
No 87
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=5.9e-11 Score=129.84 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=103.7
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC-----C-CCCCChHH
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----N-GNAGEPAK 194 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~-----~-~~~Ge~~k 194 (464)
..|+|+|++.+.. ...+...++.+...++- ....|+|||++|||||+|+.+||+++.. . .|+. .+.
T Consensus 283 ~~~TFDnFvvG~s------N~~A~aaa~avae~~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-aee 354 (617)
T PRK14086 283 PKYTFDTFVIGAS------NRFAHAAAVAVAEAPAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-SEE 354 (617)
T ss_pred CCCCHhhhcCCCc------cHHHHHHHHHHHhCccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHH
Confidence 4678888875421 12233344555443332 1234999999999999999999999742 2 1221 122
Q ss_pred HHHHHHHHH----HHHH--HhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCc
Q 012418 195 LIRQRYREA----ADII--KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268 (464)
Q Consensus 195 ~Ir~~F~~A----~~~~--~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V 268 (464)
.+.++.... .+.. +..++.+|+||||+.+.++.. .+ ..|+++++ . ....+.
T Consensus 355 f~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~--tq---------eeLF~l~N---------~---l~e~gk 411 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES--TQ---------EEFFHTFN---------T---LHNANK 411 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH--HH---------HHHHHHHH---------H---HHhcCC
Confidence 221111110 0011 134578999999998876532 11 22333333 1 111234
Q ss_pred eEEEEeCCC----CCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCC--hhHHHHHhcCCCh
Q 012418 269 PIIVTGNDF----STLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP--KEDIVKLVDTFPG 329 (464)
Q Consensus 269 ~VIaTTN~~----~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~--~~~la~lt~gfsg 329 (464)
.||+|+|.+ ..|++.|..+...-..+.+ |+.+.|.+|++.+....++. .+.+.-++..++.
T Consensus 412 ~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r 480 (617)
T PRK14086 412 QIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR 480 (617)
T ss_pred CEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC
Confidence 577888875 4678888873333444455 99999999998887766554 5555555666654
No 88
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.25 E-value=1e-09 Score=112.25 Aligned_cols=133 Identities=14% Similarity=0.188 Sum_probs=80.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC---------CC------CCCCChHHHHH---------------------HHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG---------IN------GNAGEPAKLIR---------------------QRY 200 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg---------~~------~~~Ge~~k~Ir---------------------~~F 200 (464)
..|..++|+||||||||++++++++++. +. .........+. +.|
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 4456799999999999999999998763 11 11111111111 122
Q ss_pred HHHHHHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-
Q 012418 201 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS- 278 (464)
Q Consensus 201 ~~A~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~- 278 (464)
....+.+. ..++.||+|||+|.+.+.. + . +|+++.+ +. ........++.+|++||+++
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~----~-----~----~L~~l~~------~~-~~~~~~~~~v~lI~i~n~~~~ 177 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDD----D-----D----LLYQLSR------AR-SNGDLDNAKVGVIGISNDLKF 177 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCC----c-----H----HHHhHhc------cc-cccCCCCCeEEEEEEECCcch
Confidence 22223333 4668899999999997321 1 1 2333332 00 00112336788999999986
Q ss_pred --CCchhhccCCcce-EEEeC--CCHHHHHHHHHhhcC
Q 012418 279 --TLYAPLIRDGRME-KFYWA--PTREDRIGVCSGIFR 311 (464)
Q Consensus 279 --~LDpALlRpGRfD-~~i~i--P~~eeR~eIl~~~~~ 311 (464)
.|++.+.+ ||. ..+.+ ++.++..+|++..+.
T Consensus 178 ~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 178 RENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred HhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 47778766 553 34454 789999999876653
No 89
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=1.4e-10 Score=126.54 Aligned_cols=154 Identities=15% Similarity=0.208 Sum_probs=102.8
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 186 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------- 186 (464)
+|+.++|. ..++..+++.+.. -+.+..+|||||||||||++|+.+|++++..
T Consensus 14 ~f~~viGq---------~~v~~~L~~~i~~--~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 14 TFEDVVGQ---------EHITKTLKNAIKQ--GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred cHHhccCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 56788886 3344455555553 3568899999999999999999999998643
Q ss_pred ------------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 187 ------------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 187 ------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
...+.....||++...+...-......|+||||+|.+.. ...+. |+..++
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~------------~a~na-LLKtLE----- 144 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST------------GAFNA-LLKTLE----- 144 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------HHHHH-HHHHhc-----
Confidence 001134456777777652211256678999999987632 12333 333444
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe-CCCHHHHHHHHHhhcCCCCCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP 316 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~v~ 316 (464)
+....+.+|++|+.++.|++.+++ |+.++-. .|+.++..+++..++...++.
T Consensus 145 --------epp~~~ifIlatt~~~ki~~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 145 --------EPPAHVIFILATTEPHKIPATILS--RCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred --------CCCCCeEEEEEeCChhhCcHHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 334456777778889999999886 6655333 378888888888777666544
No 90
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1e-10 Score=125.60 Aligned_cols=163 Identities=17% Similarity=0.274 Sum_probs=106.9
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 186 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------- 186 (464)
+|++++|. ..++..+++.+... +.|..+||+||||+|||++|+.+|+.+++.
T Consensus 11 ~f~dliGQ---------e~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i 79 (491)
T PRK14964 11 SFKDLVGQ---------DVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISI 79 (491)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHH
Confidence 55777776 33445556655533 568899999999999999999999987542
Q ss_pred ------------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 187 ------------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 187 ------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
.........||++...+...--..+..|+||||+|.+.. ...+. |+..++
T Consensus 80 ~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------~A~Na-LLK~LE----- 141 (491)
T PRK14964 80 KNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN------------SAFNA-LLKTLE----- 141 (491)
T ss_pred hccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH------------HHHHH-HHHHHh-----
Confidence 000123455777766652211245678999999986632 12333 334444
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCC--hh---HHHHHhcC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP--KE---DIVKLVDT 326 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~--~~---~la~lt~g 326 (464)
+..+.+.+|++|+.++.|++.++. |+-. +.+ ++.++..+.+..+...+++. .+ .|++.+.|
T Consensus 142 --------ePp~~v~fIlatte~~Kl~~tI~S--Rc~~-~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 142 --------EPAPHVKFILATTEVKKIPVTIIS--RCQR-FDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred --------CCCCCeEEEEEeCChHHHHHHHHH--hhee-eecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 334557788888899999999887 5544 343 78888888888877766554 33 44444544
No 91
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.23 E-value=1.7e-10 Score=115.27 Aligned_cols=152 Identities=17% Similarity=0.197 Sum_probs=99.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 230 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~ 230 (464)
...=-+|||||||.|||+||..||+|||.+ ...-.+..+ ..++- .-....|||||||..+..
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDl-aaiLt------~Le~~DVLFIDEIHrl~~----- 117 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDL-AAILT------NLEEGDVLFIDEIHRLSP----- 117 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhH-HHHHh------cCCcCCeEEEehhhhcCh-----
Confidence 344579999999999999999999999998 111222221 11111 134457999999976533
Q ss_pred CccchhhHHHHHHHHhhhcCCCcccCC---C--c---cccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe--CCCHH
Q 012418 231 TQYTVNNQMVNATLMNIADNPTNVQLP---G--M---YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 300 (464)
Q Consensus 231 ~~~~~~~~~v~~~L~~llD~~~~v~ld---G--~---~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~--iP~~e 300 (464)
.+...|+-.+++ .++| | . ...-..+..-+|++|-+...|..||.- ||-.... ..+.+
T Consensus 118 --------~vEE~LYpaMED---f~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~ 184 (332)
T COG2255 118 --------AVEEVLYPAMED---FRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVE 184 (332)
T ss_pred --------hHHHHhhhhhhh---eeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHH
Confidence 344556655542 2222 1 1 011223455689999999999999986 6665554 59999
Q ss_pred HHHHHHHhhcC--CCCCChh---HHHHHhcCCChhhHH
Q 012418 301 DRIGVCSGIFR--TDNVPKE---DIVKLVDTFPGQSID 333 (464)
Q Consensus 301 eR~eIl~~~~~--~~~v~~~---~la~lt~gfsgadLd 333 (464)
+..+|++.... .-.++.+ +|++.+.|-|--+..
T Consensus 185 eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnR 222 (332)
T COG2255 185 ELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANR 222 (332)
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHH
Confidence 99999765443 3344443 888888888865443
No 92
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.23 E-value=7.6e-11 Score=115.05 Aligned_cols=170 Identities=15% Similarity=0.193 Sum_probs=92.1
Q ss_pred ccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----CCCCChHHHHH
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----GNAGEPAKLIR 197 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----~~~Ge~~k~Ir 197 (464)
.++|+|.+.+ .+..+...++.+...++ +..++||||||||||+|++++|+++... .|..-. .. .
T Consensus 18 ~~~fd~f~~~-------~n~~a~~~l~~~~~~~~---~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~-~~-~ 85 (235)
T PRK08084 18 DETFASFYPG-------DNDSLLAALQNALRQEH---SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD-KR-A 85 (235)
T ss_pred cCCccccccC-------ccHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH-HH-h
Confidence 3456665533 12334555555544332 3479999999999999999999987532 111111 00 0
Q ss_pred HHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeC-C
Q 012418 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-D 276 (464)
Q Consensus 198 ~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN-~ 276 (464)
.......+.++. ..+|+|||++.+.++.. .+ ..+..++..+. +.+++.+|+||+ .
T Consensus 86 ~~~~~~~~~~~~--~dlliiDdi~~~~~~~~--~~-----~~lf~l~n~~~---------------e~g~~~li~ts~~~ 141 (235)
T PRK08084 86 WFVPEVLEGMEQ--LSLVCIDNIECIAGDEL--WE-----MAIFDLYNRIL---------------ESGRTRLLITGDRP 141 (235)
T ss_pred hhhHHHHHHhhh--CCEEEEeChhhhcCCHH--HH-----HHHHHHHHHHH---------------HcCCCeEEEeCCCC
Confidence 001111111122 36899999998765422 11 22222222211 123334555555 4
Q ss_pred CCC---CchhhccCCcce--EEEeC--CCHHHHHHHHHhhcCCC--CCChhHHHHHhcCCCh
Q 012418 277 FST---LYAPLIRDGRME--KFYWA--PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 329 (464)
Q Consensus 277 ~~~---LDpALlRpGRfD--~~i~i--P~~eeR~eIl~~~~~~~--~v~~~~la~lt~gfsg 329 (464)
|.. +.|.|.. |+. ..+.+ |+.++|.+|++...... .++.+.+.-++..+++
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~ 201 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR 201 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC
Confidence 455 5788886 664 44554 89999999987755443 3445544444444443
No 93
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.22 E-value=1.3e-10 Score=123.39 Aligned_cols=178 Identities=17% Similarity=0.250 Sum_probs=101.1
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC-----C-CCCCChHH
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----N-GNAGEPAK 194 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~-----~-~~~Ge~~k 194 (464)
..|+|+|.+.+ +. .+.+...++.+...++. ...++||||||||||+|+++|++++.. . .|+. ...
T Consensus 100 ~~~tFdnFv~g----~~--n~~a~~~~~~~~~~~~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~~~ 170 (440)
T PRK14088 100 PDYTFENFVVG----PG--NSFAYHAALEVAKNPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SEK 170 (440)
T ss_pred CCCcccccccC----Cc--hHHHHHHHHHHHhCcCC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-HHH
Confidence 46788988754 11 12344556666655553 345999999999999999999999732 1 2222 122
Q ss_pred HHHHHHHHH----H-HHHH--hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCC
Q 012418 195 LIRQRYREA----A-DIIK--KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267 (464)
Q Consensus 195 ~Ir~~F~~A----~-~~~~--~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~ 267 (464)
.+.++.... . +... ..++.+|+|||++.+.+... .+ ..+-.++..+.+ .+
T Consensus 171 f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~--~q-----~elf~~~n~l~~----------------~~ 227 (440)
T PRK14088 171 FLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTG--VQ-----TELFHTFNELHD----------------SG 227 (440)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHH--HH-----HHHHHHHHHHHH----------------cC
Confidence 222211110 0 0111 23688999999998865422 11 122222222221 12
Q ss_pred ceEEEEe-CCCCC---CchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCC--CCChhHHHHHhcCCChh
Q 012418 268 VPIIVTG-NDFST---LYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQ 330 (464)
Q Consensus 268 V~VIaTT-N~~~~---LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~--~v~~~~la~lt~gfsga 330 (464)
..+|+|| +.|.. +.+.|..+......+.+ |+.+.|.+|++...... .++.+.+..++..+++.
T Consensus 228 k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 228 KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDN 298 (440)
T ss_pred CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccC
Confidence 2466666 55554 44566652222334444 99999999998877544 45566666666666653
No 94
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.22 E-value=2.2e-11 Score=108.02 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=68.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC-----CCCCChHHHHHHHHHHHH--------HHHH-hCCcEEEEeccccccccC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN-----GNAGEPAKLIRQRYREAA--------DIIK-KGKMCCLFINDLDAGAGR 226 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~-----~~~Ge~~k~Ir~~F~~A~--------~~~~-~~~P~ILfIDEIDal~~~ 226 (464)
.|||+||||||||++|+.+|+.++.+ ...+.....+-..+.... .+.+ ..++++||||||+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~-- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP-- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC--
Confidence 48999999999999999999999876 111111111111110000 0000 1268999999998542
Q ss_pred CCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCC------CceEEEEeCCCC----CCchhhccCCcc
Q 012418 227 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP------RVPIIVTGNDFS----TLYAPLIRDGRM 290 (464)
Q Consensus 227 r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~------~V~VIaTTN~~~----~LDpALlRpGRf 290 (464)
..+.+.|+.++++-......+........ +..||+|+|..+ .|++||+| ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 23445577777754443223322111112 489999999999 99999998 65
No 95
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1.4e-10 Score=127.24 Aligned_cols=170 Identities=11% Similarity=0.119 Sum_probs=106.6
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..+...+++++... +.+..+||+||||||||++|+++|+.+....
T Consensus 14 sf~dIiGQ---------e~v~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i 82 (624)
T PRK14959 14 TFAEVAGQ---------ETVKAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82 (624)
T ss_pred CHHHhcCC---------HHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence 56777776 33455566666533 4567999999999999999999999987530
Q ss_pred ----------CCC---ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 188 ----------NAG---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 188 ----------~~G---e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
.-+ .....+|.+-+.+...-......||||||+|.+... ..+. |+..++
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~------------a~na-LLk~LE----- 144 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE------------AFNA-LLKTLE----- 144 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH------------HHHH-HHHHhh-----
Confidence 001 122334443333211112556789999999977321 1233 444444
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCC--CChh---HHHHHhcCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN--VPKE---DIVKLVDTF 327 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~--v~~~---~la~lt~gf 327 (464)
+....+.+|++||.+..|.+.|++ |+.. |.+ ++.++..++++.++...+ ++.+ .|++++.|-
T Consensus 145 --------EP~~~~ifILaTt~~~kll~TI~S--Rcq~-i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gd 213 (624)
T PRK14959 145 --------EPPARVTFVLATTEPHKFPVTIVS--RCQH-FTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGS 213 (624)
T ss_pred --------ccCCCEEEEEecCChhhhhHHHHh--hhhc-cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 334567888899999999998886 5543 444 778888888877776655 4444 444455554
Q ss_pred ChhhHH
Q 012418 328 PGQSID 333 (464)
Q Consensus 328 sgadLd 333 (464)
....+.
T Consensus 214 lR~Al~ 219 (624)
T PRK14959 214 VRDSMS 219 (624)
T ss_pred HHHHHH
Confidence 333333
No 96
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1.6e-10 Score=119.15 Aligned_cols=162 Identities=14% Similarity=0.191 Sum_probs=101.2
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|+.++|. +.+...+++.++. -+.|..+|||||||+|||++|+++|+.+....
T Consensus 15 ~~~~iig~---------~~~~~~l~~~i~~--~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~ 83 (367)
T PRK14970 15 TFDDVVGQ---------SHITNTLLNAIEN--NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD 83 (367)
T ss_pred cHHhcCCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec
Confidence 45777776 2233444555543 25678999999999999999999999986520
Q ss_pred -CCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCC
Q 012418 188 -NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266 (464)
Q Consensus 188 -~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~ 266 (464)
........+++++..+...--...+.||||||+|.+... ..+. |+..++ ....
T Consensus 84 ~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~------------~~~~-ll~~le-------------~~~~ 137 (367)
T PRK14970 84 AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA------------AFNA-FLKTLE-------------EPPA 137 (367)
T ss_pred cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH------------HHHH-HHHHHh-------------CCCC
Confidence 011123456666766521111455689999999865321 1233 333333 2223
Q ss_pred CceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCC--ChhHHHHHhc
Q 012418 267 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV--PKEDIVKLVD 325 (464)
Q Consensus 267 ~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v--~~~~la~lt~ 325 (464)
...+|++||....+.+++.++++ .+.+ |+.++...++.......++ +.+.+..++.
T Consensus 138 ~~~~Il~~~~~~kl~~~l~sr~~---~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~ 197 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILSRCQ---IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQ 197 (367)
T ss_pred ceEEEEEeCCcccCCHHHHhcce---eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34677778888999999987544 2444 7888888888777666664 4444444333
No 97
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=2.4e-10 Score=124.26 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=97.8
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..++..+++.+.. -+.+..+|||||||||||++|+++|+.+....
T Consensus 14 ~f~diiGq---------~~~v~~L~~~i~~--~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 14 SFAEVAGQ---------QHALNSLVHALET--QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred cHHHhcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 56777775 2233334444442 36688899999999999999999999987520
Q ss_pred ----------C---CCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 188 ----------N---AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 188 ----------~---~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
. .......++++...+...-..+...|+||||+|.+.. ...+ .|+..++
T Consensus 83 ~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~------------~a~n-aLLK~LE----- 144 (546)
T PRK14957 83 NNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK------------QSFN-ALLKTLE----- 144 (546)
T ss_pred hcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH------------HHHH-HHHHHHh-----
Confidence 0 0012234566666553222356678999999986532 1222 3445554
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 316 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~ 316 (464)
+....+.+|++|+++..+.+.++. |+.. +.+ ++.++..+.++.++...++.
T Consensus 145 --------epp~~v~fIL~Ttd~~kil~tI~S--Rc~~-~~f~~Ls~~eI~~~L~~il~~egi~ 197 (546)
T PRK14957 145 --------EPPEYVKFILATTDYHKIPVTILS--RCIQ-LHLKHISQADIKDQLKIILAKENIN 197 (546)
T ss_pred --------cCCCCceEEEEECChhhhhhhHHH--heee-EEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 333456677777889999988776 6644 443 77888877777776655554
No 98
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1.2e-10 Score=126.36 Aligned_cols=170 Identities=14% Similarity=0.180 Sum_probs=107.7
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC-----CC---------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING-----NA--------- 189 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~-----~~--------- 189 (464)
+|++++|. ..++..+++.+.. -+.+..+||+||||||||++|+++|+.++... -.
T Consensus 14 ~f~divGq---------~~v~~~L~~~i~~--~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 14 SFSELVGQ---------EHVVRALTNALEQ--QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred cHHHhcCc---------HHHHHHHHHHHHc--CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 56777776 3344455555543 35678999999999999999999999987630 00
Q ss_pred ---------------CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 190 ---------------GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 190 ---------------Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
......+|++...+...--.++..|+||||+|.+.. ...|.+| ..++
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~------------~a~naLL-K~LE----- 144 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK------------SAFNAML-KTLE----- 144 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH------------HHHHHHH-HHHh-----
Confidence 112344666666552111145668999999986632 1233333 3343
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCCh--h---HHHHHhcCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK--E---DIVKLVDTF 327 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~~--~---~la~lt~gf 327 (464)
+....+.+|++|++++.+.+.++. |+-. +.+ |+.++..+.++.++..+++.. + .|++.+.|-
T Consensus 145 --------epp~~~~fIL~t~d~~kil~tI~S--Rc~~-~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gs 213 (527)
T PRK14969 145 --------EPPEHVKFILATTDPQKIPVTVLS--RCLQ-FNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGS 213 (527)
T ss_pred --------CCCCCEEEEEEeCChhhCchhHHH--HHHH-HhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 334567788888899999988776 5543 343 778888877777776655543 2 455566654
Q ss_pred ChhhHH
Q 012418 328 PGQSID 333 (464)
Q Consensus 328 sgadLd 333 (464)
....+.
T Consensus 214 lr~al~ 219 (527)
T PRK14969 214 MRDALS 219 (527)
T ss_pred HHHHHH
Confidence 444433
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=2.2e-10 Score=125.98 Aligned_cols=153 Identities=16% Similarity=0.230 Sum_probs=101.9
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..++..+++++... +.|..+|||||+|||||++|+++|+.+++..
T Consensus 14 ~f~dviGQ---------e~vv~~L~~~l~~~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 14 SFSEMVGQ---------EHVVQALTNALTQQ--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 56788876 44556667776643 5688999999999999999999999987520
Q ss_pred --------------CC----CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhc
Q 012418 188 --------------NA----GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249 (464)
Q Consensus 188 --------------~~----Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD 249 (464)
.+ ......||++...+...-..++..|+||||+|.+... ..|.+| ..++
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~------------a~NaLL-KtLE 149 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT------------AFNAML-KTLE 149 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH------------HHHHHH-Hhcc
Confidence 00 0122346666655411111345679999999976332 133333 3333
Q ss_pred CCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCC
Q 012418 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 316 (464)
Q Consensus 250 ~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~ 316 (464)
+....+.+|++|+++..|.+.++. |+.. +.+ ++.++..+.++.++..+++.
T Consensus 150 -------------EPP~~~~fIL~Ttd~~kil~TIlS--Rc~~-~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 150 -------------EPPEYLKFVLATTDPQKVPVTVLS--RCLQ-FNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred -------------cCCCCeEEEEEECCchhhhHHHHH--hcee-eecCCCCHHHHHHHHHHHHHHcCCC
Confidence 334556788888899999999876 6644 444 67888888888877766665
No 100
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.21 E-value=2.3e-10 Score=113.47 Aligned_cols=135 Identities=16% Similarity=0.234 Sum_probs=82.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC-------------CCCCC----hHHHHHHHHHHHH--------------HHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN-------------GNAGE----PAKLIRQRYREAA--------------DII 207 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~-------------~~~Ge----~~k~Ir~~F~~A~--------------~~~ 207 (464)
..-|||+||||||||++|+++|+.+|.+ ..+|. ....+...|.... -+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 3468999999999999999999999876 11111 1111111111000 000
Q ss_pred H-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCcccc----CCCCCceEEEEeCCC-----
Q 012418 208 K-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ----EENPRVPIIVTGNDF----- 277 (464)
Q Consensus 208 ~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~----~~~~~V~VIaTTN~~----- 277 (464)
. ...+.+|+|||||..-. .+...|+++++.- .+.+++.-.. ...+...||+|+|..
T Consensus 101 ~A~~~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~~-~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSKP-------------ETNNVLLSVFEEG-VLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHcCCEEEEcchhhCCH-------------HHHHHHHHHhcCC-eEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 0 12356999999986422 2345577777632 2223332000 012456799999976
Q ss_pred CCCchhhccCCcceEEEeC--CCHHHHHHHHHhhc
Q 012418 278 STLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 278 ~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~ 310 (464)
..++++|++ ||-. +++ |+.++-.+|++..+
T Consensus 167 ~~l~~aL~~--R~~~-i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RLIT-IFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hcEE-EECCCCCHHHHHHHHHHhh
Confidence 367999998 7744 454 99999999998765
No 101
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.21 E-value=2.7e-10 Score=115.92 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=92.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCCC--------------------------CCC---ChHHHHHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGING--------------------------NAG---EPAKLIRQRYREAADII 207 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~--------------------------~~G---e~~k~Ir~~F~~A~~~~ 207 (464)
+.|..+|||||||+|||++|+++|+.+.... .-+ .....+++++..+...-
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 113 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAP 113 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCc
Confidence 5678999999999999999999999975320 001 13345667777652111
Q ss_pred HhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccC
Q 012418 208 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRp 287 (464)
......|++|||+|.+.. ...+.+| ..++ .....+.+|++||+++.|.+++.+
T Consensus 114 ~~~~~~vviidea~~l~~------------~~~~~Ll-~~le-------------~~~~~~~lIl~~~~~~~l~~~l~s- 166 (355)
T TIGR02397 114 SSGKYKVYIIDEVHMLSK------------SAFNALL-KTLE-------------EPPEHVVFILATTEPHKIPATILS- 166 (355)
T ss_pred ccCCceEEEEeChhhcCH------------HHHHHHH-HHHh-------------CCccceeEEEEeCCHHHHHHHHHh-
Confidence 134557999999987632 1233333 3334 223456788888999999999887
Q ss_pred CcceEEEeC--CCHHHHHHHHHhhcCCCC--CChhHH---HHHhcC
Q 012418 288 GRMEKFYWA--PTREDRIGVCSGIFRTDN--VPKEDI---VKLVDT 326 (464)
Q Consensus 288 GRfD~~i~i--P~~eeR~eIl~~~~~~~~--v~~~~l---a~lt~g 326 (464)
|+.. +.+ |+.++..++++.++...+ ++.+.+ ++.+.|
T Consensus 167 -r~~~-~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 167 -RCQR-FDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred -heeE-EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5654 444 788999999888776655 444433 444444
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=2e-10 Score=125.89 Aligned_cols=154 Identities=12% Similarity=0.196 Sum_probs=101.5
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..+...+++++... +.|..+|||||||||||++|+++|++++...
T Consensus 14 ~f~~iiGq---------~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 14 TFSDLTGQ---------EHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred CHHHccCc---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 56788886 33445556666533 6788999999999999999999999986530
Q ss_pred ----------CC---CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 188 ----------NA---GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 188 ----------~~---Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
.- ......||++...+...--.....|+||||+|.+... ..+ .|+..++
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~------------a~n-aLLk~LE----- 144 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN------------AFN-ALLKTLE----- 144 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH------------HHH-HHHHHHH-----
Confidence 11 1223456776665511111445679999999866321 123 3444454
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe-CCCHHHHHHHHHhhcCCCCCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP 316 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~v~ 316 (464)
+....+.+|++||.++.|++.++. |+-.+-. -++.++....+..++..+++.
T Consensus 145 --------epp~~~~fIl~t~~~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 145 --------EPPPHVKFIFATTEPHKVPITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred --------cCCCCeEEEEEeCChhhhhHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 344567888888999999999986 5543222 267777777777776666544
No 103
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.20 E-value=1.1e-10 Score=117.58 Aligned_cols=139 Identities=14% Similarity=0.183 Sum_probs=81.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCCC------------CCCChHH--------------------HHHHHHHHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGING------------NAGEPAK--------------------LIRQRYREAADIIK 208 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~~------------~~Ge~~k--------------------~Ir~~F~~A~~~~~ 208 (464)
.+|||||||||||++|+++++++.... +...... ...+.|+.......
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 589999999999999999999985320 0000000 01122332211111
Q ss_pred -----hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchh
Q 012418 209 -----KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283 (464)
Q Consensus 209 -----~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpA 283 (464)
...+.+|||||+|.+... ..+.|..+++ .......+|+||+.+..+.++
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED-------------AQQALRRIME-------------QYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHHHHH-------------hccCCCeEEEEeCChhhCchh
Confidence 234579999999966321 1223444554 112234567777777888888
Q ss_pred hccCCcceEEE-eCCCHHHHHHHHHhhcCCCCC--ChhHHHHHhcCC
Q 012418 284 LIRDGRMEKFY-WAPTREDRIGVCSGIFRTDNV--PKEDIVKLVDTF 327 (464)
Q Consensus 284 LlRpGRfD~~i-~iP~~eeR~eIl~~~~~~~~v--~~~~la~lt~gf 327 (464)
|.. |+..+. ..|+.+++.++++.+....++ +.+.+..++...
T Consensus 172 L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 172 IRS--RCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA 216 (337)
T ss_pred hcC--CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 876 443322 238899999998887766554 455555544443
No 104
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.19 E-value=7.4e-11 Score=118.71 Aligned_cols=159 Identities=19% Similarity=0.280 Sum_probs=100.8
Q ss_pred HHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-------------CCCCChHHHHHH---HHHHHH
Q 012418 141 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------GNAGEPAKLIRQ---RYREAA 204 (464)
Q Consensus 141 ~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------------~~~Ge~~k~Ir~---~F~~A~ 204 (464)
..++.+++|-+...+. .-+|||||||||||+.|++.|.++..+ ..-|.. .+|+ .|.+..
T Consensus 42 e~vV~~L~~a~~~~~l---p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis--vvr~Kik~fakl~ 116 (346)
T KOG0989|consen 42 EHVVQVLKNALLRRIL---PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS--VVREKIKNFAKLT 116 (346)
T ss_pred HHHHHHHHHHHhhcCC---ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc--chhhhhcCHHHHh
Confidence 4456667776665222 368999999999999999999998764 112221 1222 233221
Q ss_pred HHHH-----hCCc-EEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC
Q 012418 205 DIIK-----KGKM-CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 278 (464)
Q Consensus 205 ~~~~-----~~~P-~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~ 278 (464)
...+ ...| -|++|||.|.+... ...+|.+.++ .....+.+|.-||..+
T Consensus 117 ~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE-------------~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 117 VLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTME-------------DFSRTTRFILICNYLS 170 (346)
T ss_pred hccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHh-------------ccccceEEEEEcCChh
Confidence 1111 1222 69999999987543 2245666666 4455678999999999
Q ss_pred CCchhhccCCcceEEEeCC-CHHHHHHHHHhhcCCCCCChh-HHHHHhcCCChhhH
Q 012418 279 TLYAPLIRDGRMEKFYWAP-TREDRIGVCSGIFRTDNVPKE-DIVKLVDTFPGQSI 332 (464)
Q Consensus 279 ~LDpALlRpGRfD~~i~iP-~~eeR~eIl~~~~~~~~v~~~-~la~lt~gfsgadL 332 (464)
.|+.++.. |+-++.+-| ..+.....++.+..+++++.+ +..++....++.||
T Consensus 171 rii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 171 RIIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDL 224 (346)
T ss_pred hCChHHHh--hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Confidence 99999997 888866643 334456667777777777754 33333333344343
No 105
>PRK08727 hypothetical protein; Validated
Probab=99.19 E-value=8.2e-11 Score=114.67 Aligned_cols=139 Identities=14% Similarity=0.063 Sum_probs=83.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC----CCCC--ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCcc
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN----GNAG--EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 233 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~----~~~G--e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~ 233 (464)
..++||||+|||||+|+.++++++.-. .|+. +....+.+.+. +..+..+|+|||+|.+.+... .
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~------~l~~~dlLiIDDi~~l~~~~~--~-- 111 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALE------ALEGRSLVALDGLESIAGQRE--D-- 111 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHH------HHhcCCEEEEeCcccccCChH--H--
Confidence 459999999999999999999886432 1211 11112222222 123457999999998765432 1
Q ss_pred chhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeC-CCCCC---chhhccCCcc--eEEEeC--CCHHHHHHH
Q 012418 234 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-DFSTL---YAPLIRDGRM--EKFYWA--PTREDRIGV 305 (464)
Q Consensus 234 ~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN-~~~~L---DpALlRpGRf--D~~i~i--P~~eeR~eI 305 (464)
...|+++++ . ....+..||+|+| .|+.+ +++|.+ || -..+.+ |+.++|.+|
T Consensus 112 -------~~~lf~l~n---------~---~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 112 -------EVALFDFHN---------R---ARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAV 170 (233)
T ss_pred -------HHHHHHHHH---------H---HHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHH
Confidence 123334433 1 1123456777776 45555 688887 54 234444 899999999
Q ss_pred HHhhcCC--CCCChhHHHHHhcCCCh
Q 012418 306 CSGIFRT--DNVPKEDIVKLVDTFPG 329 (464)
Q Consensus 306 l~~~~~~--~~v~~~~la~lt~gfsg 329 (464)
++.+... -.++.+.+.-++..+++
T Consensus 171 L~~~a~~~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 171 LRERAQRRGLALDEAAIDWLLTHGER 196 (233)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 8875543 34555555555555543
No 106
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.19 E-value=4.4e-10 Score=126.24 Aligned_cols=132 Identities=15% Similarity=0.199 Sum_probs=85.9
Q ss_pred CCcE-EEEEcCCCccHHHHHHHHHHHhCCC----------------CCCCChHHH-----HHHHHHHHHHHHHhCCcEEE
Q 012418 158 VPLI-LGIWGGKGQGKSFQCELVFAKMGIN----------------GNAGEPAKL-----IRQRYREAADIIKKGKMCCL 215 (464)
Q Consensus 158 ~p~G-LLL~GPPGtGKT~LAkaIA~elg~~----------------~~~Ge~~k~-----Ir~~F~~A~~~~~~~~P~IL 215 (464)
.|.| +||+||||||||++|+++|+.++.+ ..+|.+... ...+.. .++....+||
T Consensus 482 ~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~----~~~~~p~~Vv 557 (731)
T TIGR02639 482 KPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTE----AVRKHPHCVL 557 (731)
T ss_pred CCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHH----HHHhCCCeEE
Confidence 3554 7899999999999999999999764 111211100 011112 2255667999
Q ss_pred EeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----------------
Q 012418 216 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS----------------- 278 (464)
Q Consensus 216 fIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~----------------- 278 (464)
||||||+... .+...|++++|+-..+ |+.-......+++||+|||.-.
T Consensus 558 llDEieka~~-------------~~~~~Ll~~ld~g~~~--d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~ 622 (731)
T TIGR02639 558 LLDEIEKAHP-------------DIYNILLQVMDYATLT--DNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVES 622 (731)
T ss_pred EEechhhcCH-------------HHHHHHHHhhccCeee--cCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHH
Confidence 9999997632 2456677888843222 1111123346788999998742
Q ss_pred --------CCchhhccCCcceEEEeC--CCHHHHHHHHHhhc
Q 012418 279 --------TLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 279 --------~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~ 310 (464)
.+.|+|+ +|||.++.+ .+.++..+|+...+
T Consensus 623 ~~~~~~~~~f~pef~--~Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 623 KSDKAIKKLFSPEFR--NRLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred HHHHHHHhhcChHHH--hcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 2567777 599998886 68899998876554
No 107
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=4.2e-10 Score=121.51 Aligned_cols=167 Identities=13% Similarity=0.170 Sum_probs=104.5
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 186 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------- 186 (464)
+|+.++|. ..+...+++++.. -+.|..+|||||||||||++|+++|+.+...
T Consensus 12 ~~~dvvGq---------~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~ 80 (504)
T PRK14963 12 TFDEVVGQ---------EHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVR 80 (504)
T ss_pred CHHHhcCh---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHh
Confidence 45677775 2233444555543 3567889999999999999999999998541
Q ss_pred -----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCccc
Q 012418 187 -----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 255 (464)
Q Consensus 187 -----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ 255 (464)
.........+|++...+...--...+.||||||+|.+.. ...+.+ +..++
T Consensus 81 ~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~------------~a~naL-Lk~LE------ 141 (504)
T PRK14963 81 RGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK------------SAFNAL-LKTLE------ 141 (504)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH------------HHHHHH-HHHHH------
Confidence 000112345666544442211245678999999985421 223333 33333
Q ss_pred CCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCC--hh---HHHHHhcCCC
Q 012418 256 LPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP--KE---DIVKLVDTFP 328 (464)
Q Consensus 256 ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~--~~---~la~lt~gfs 328 (464)
.....+.+|++||.+..|++++.. |+.. +.+ |+.++..+.+..++..+++. .+ .|++.+.|-.
T Consensus 142 -------ep~~~t~~Il~t~~~~kl~~~I~S--Rc~~-~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 142 -------EPPEHVIFILATTEPEKMPPTILS--RTQH-FRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAM 211 (504)
T ss_pred -------hCCCCEEEEEEcCChhhCChHHhc--ceEE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 333456778888999999999987 5554 444 88888888888877666654 33 4455555443
Q ss_pred hh
Q 012418 329 GQ 330 (464)
Q Consensus 329 ga 330 (464)
..
T Consensus 212 R~ 213 (504)
T PRK14963 212 RD 213 (504)
T ss_pred HH
Confidence 33
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=7.9e-10 Score=121.13 Aligned_cols=154 Identities=11% Similarity=0.121 Sum_probs=100.8
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..++..+++++.. -+.|..+||+||+|||||++|+++|+.++...
T Consensus 11 ~f~eivGq---------~~i~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 79 (584)
T PRK14952 11 TFAEVVGQ---------EHVTEPLSSALDA--GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVAL 79 (584)
T ss_pred cHHHhcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHh
Confidence 56787876 4455556677654 36788999999999999999999999987420
Q ss_pred ------------CCC---ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCC
Q 012418 188 ------------NAG---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 252 (464)
Q Consensus 188 ------------~~G---e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~ 252 (464)
.-+ .....||++-..+...-......|+||||+|.+-.. ..+. |+..+.
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~------------A~NA-LLK~LE--- 143 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA------------GFNA-LLKIVE--- 143 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH------------HHHH-HHHHHh---
Confidence 001 123455655544421112456679999999876321 2333 344444
Q ss_pred cccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe-CCCHHHHHHHHHhhcCCCCCC
Q 012418 253 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP 316 (464)
Q Consensus 253 ~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~v~ 316 (464)
+....+.+|++|+.++.|.++++. |+-.+-. .++.++..+.+..++...++.
T Consensus 144 ----------Epp~~~~fIL~tte~~kll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 144 ----------EPPEHLIFIFATTEPEKVLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred ----------cCCCCeEEEEEeCChHhhHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 344567788888889999999986 5544322 277888877777777665543
No 109
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.16 E-value=5.2e-10 Score=115.67 Aligned_cols=150 Identities=16% Similarity=0.226 Sum_probs=85.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC-----CC------CCCCChHH-------------------HHHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG-----IN------GNAGEPAK-------------------LIRQRYREAADII 207 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg-----~~------~~~Ge~~k-------------------~Ir~~F~~A~~~~ 207 (464)
.|..++||||||||||++++.+++++. +. ........ ...+.+....+.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 133 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYL 133 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 445689999999999999999998862 22 00000001 1123333333333
Q ss_pred H-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC---CCchh
Q 012418 208 K-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLYAP 283 (464)
Q Consensus 208 ~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~---~LDpA 283 (464)
+ ..++.||+|||+|.+..... . ..+.. |+++.+ .....++.+|+++|+.+ .+++.
T Consensus 134 ~~~~~~~viviDE~d~l~~~~~---~-----~~l~~-l~~~~~------------~~~~~~v~vI~i~~~~~~~~~l~~~ 192 (394)
T PRK00411 134 DERDRVLIVALDDINYLFEKEG---N-----DVLYS-LLRAHE------------EYPGARIGVIGISSDLTFLYILDPR 192 (394)
T ss_pred HhcCCEEEEEECCHhHhhccCC---c-----hHHHH-HHHhhh------------ccCCCeEEEEEEECCcchhhhcCHH
Confidence 4 45789999999999873221 1 12222 222222 11223688999999874 46666
Q ss_pred hccCCcceEEEeC--CCHHHHHHHHHhhcC----CCCCChh---HHHHHhcCCCh
Q 012418 284 LIRDGRMEKFYWA--PTREDRIGVCSGIFR----TDNVPKE---DIVKLVDTFPG 329 (464)
Q Consensus 284 LlRpGRfD~~i~i--P~~eeR~eIl~~~~~----~~~v~~~---~la~lt~gfsg 329 (464)
+.++.+. ..+.+ ++.++..+|++..+. ...++.+ .+++.+.+.+|
T Consensus 193 ~~s~~~~-~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 193 VKSVFRP-EEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred HHhcCCc-ceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 6543222 23444 688999999776543 2234433 45555644444
No 110
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=6.7e-10 Score=118.43 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=98.2
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 186 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------- 186 (464)
+|++++|. ..++..+++.++. -+.|..+|||||||+|||++|+++|+.+...
T Consensus 15 ~~~diiGq---------~~~v~~L~~~i~~--~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~ 83 (451)
T PRK06305 15 TFSEILGQ---------DAVVAVLKNALRF--NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKE 83 (451)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHc--CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHH
Confidence 56788876 2233444555543 3567899999999999999999999998542
Q ss_pred ----------CCCCC---hHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCc
Q 012418 187 ----------GNAGE---PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 253 (464)
Q Consensus 187 ----------~~~Ge---~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~ 253 (464)
..-|. ....++++-+...-........|+||||+|.+... . ...|+..++
T Consensus 84 i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~------------~-~n~LLk~lE---- 146 (451)
T PRK06305 84 ISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE------------A-FNSLLKTLE---- 146 (451)
T ss_pred HhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH------------H-HHHHHHHhh----
Confidence 01121 12345544333311112467789999999876321 1 233445554
Q ss_pred ccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCC
Q 012418 254 VQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV 315 (464)
Q Consensus 254 v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v 315 (464)
+....+.+|++||.+..|.+++.. |+.. +++ ++.++..+.+..+....++
T Consensus 147 ---------ep~~~~~~Il~t~~~~kl~~tI~s--Rc~~-v~f~~l~~~el~~~L~~~~~~eg~ 198 (451)
T PRK06305 147 ---------EPPQHVKFFLATTEIHKIPGTILS--RCQK-MHLKRIPEETIIDKLALIAKQEGI 198 (451)
T ss_pred ---------cCCCCceEEEEeCChHhcchHHHH--hceE-EeCCCCCHHHHHHHHHHHHHHcCC
Confidence 334466788888999999999987 5554 444 7888888887777665553
No 111
>PRK05642 DNA replication initiation factor; Validated
Probab=99.16 E-value=1.5e-10 Score=112.92 Aligned_cols=172 Identities=13% Similarity=0.158 Sum_probs=93.8
Q ss_pred ccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC---C-CCCCChHHHHH
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI---N-GNAGEPAKLIR 197 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~---~-~~~Ge~~k~Ir 197 (464)
.|+|+|.+.+. ...+...++++....+-.....++||||+|||||+|++++++++.. . .|+. ....+.
T Consensus 15 ~~tfdnF~~~~-------~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~~ 86 (234)
T PRK05642 15 DATFANYYPGA-------NAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELLD 86 (234)
T ss_pred cccccccCcCC-------hHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHHh
Confidence 56788877441 1334555555543222223467899999999999999999988632 2 1111 122221
Q ss_pred HHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeC-C
Q 012418 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-D 276 (464)
Q Consensus 198 ~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN-~ 276 (464)
. .....+.++ ...+|+|||++.+.+... ....|+.+++ . ....+.++|+|++ .
T Consensus 87 ~-~~~~~~~~~--~~d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n---------~---~~~~g~~ilits~~~ 140 (234)
T PRK05642 87 R-GPELLDNLE--QYELVCLDDLDVIAGKAD-----------WEEALFHLFN---------R---LRDSGRRLLLAASKS 140 (234)
T ss_pred h-hHHHHHhhh--hCCEEEEechhhhcCChH-----------HHHHHHHHHH---------H---HHhcCCEEEEeCCCC
Confidence 1 111111112 235899999998765422 1123444444 1 1112234555555 4
Q ss_pred CCCC---chhhccCCcce--EEEeC--CCHHHHHHHHHhhcCCC--CCChhHHHHHhcCCCh
Q 012418 277 FSTL---YAPLIRDGRME--KFYWA--PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 329 (464)
Q Consensus 277 ~~~L---DpALlRpGRfD--~~i~i--P~~eeR~eIl~~~~~~~--~v~~~~la~lt~gfsg 329 (464)
|..+ .|.|.. ||- ..+.+ |+.++|.+|++...... .++.+.+.-++..+++
T Consensus 141 p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~ 200 (234)
T PRK05642 141 PRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR 200 (234)
T ss_pred HHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 5444 567776 653 44444 89999999987444333 3445544444444443
No 112
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.15 E-value=1.1e-09 Score=122.96 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=89.3
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhC-------CC---------CCCCChHHHH------------------HHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG-------IN---------GNAGEPAKLI------------------RQRY 200 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg-------~~---------~~~Ge~~k~I------------------r~~F 200 (464)
+-.+...|+|+|+||||||.+++.|..+|. ++ .....+.... .+.|
T Consensus 777 gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evL 856 (1164)
T PTZ00112 777 QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKIL 856 (1164)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHH
Confidence 333445667999999999999999998762 11 0001111110 1122
Q ss_pred HHHHHHHH--hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC--
Q 012418 201 REAADIIK--KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-- 276 (464)
Q Consensus 201 ~~A~~~~~--~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~-- 276 (464)
...+..+. ....+||+|||||.+.... ...|++|.+ |......++.||+.+|.
T Consensus 857 erLF~~L~k~~r~v~IIILDEID~L~kK~-------------QDVLYnLFR----------~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 857 DRLFNQNKKDNRNVSILIIDEIDYLITKT-------------QKVLFTLFD----------WPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHhhhhcccccceEEEeehHhhhCccH-------------HHHHHHHHH----------HhhccCCeEEEEEecCchh
Confidence 22222222 2346799999999887541 134555554 11123457899999997
Q ss_pred -CCCCchhhccCCcceEEEe-CCCHHHHHHHHHhhcCC--CCCChh---HHHHHhcCCChh
Q 012418 277 -FSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRT--DNVPKE---DIVKLVDTFPGQ 330 (464)
Q Consensus 277 -~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~--~~v~~~---~la~lt~gfsga 330 (464)
++.|+|.+..+.+..++.+ .++.+++.+|++..+.. .-++.+ .+|+++...+|.
T Consensus 914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGD 974 (1164)
T PTZ00112 914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGD 974 (1164)
T ss_pred cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCH
Confidence 5567777766444443333 37999999998766542 234444 344444455554
No 113
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=7.6e-10 Score=119.05 Aligned_cols=154 Identities=19% Similarity=0.279 Sum_probs=97.9
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC---C--CCC--------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN---G--NAG-------- 190 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~---~--~~G-------- 190 (464)
+|++++|. ..+...+++.+.. -+.+..+|||||||+|||++|+++|+.++.. . -.|
T Consensus 14 ~f~diiGq---------~~i~~~L~~~i~~--~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 14 FFKEVIGQ---------EIVVRILKNAVKL--QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred cHHHccCh---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 45677765 3334445555543 3567889999999999999999999998742 0 000
Q ss_pred ----------------ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 191 ----------------EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 191 ----------------e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
.....+|.+...+...-..+.+.|+||||+|.+.. ...+. |+..++
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~------------~a~na-LLk~LE----- 144 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK------------EAFNA-LLKTLE----- 144 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH------------HHHHH-HHHHHh-----
Confidence 12334555544442111256678999999996632 12233 333344
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCCh
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK 317 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~~ 317 (464)
+....+.+|++|++++.|++++++ |+.. +.+ |+.++....+..++...++..
T Consensus 145 --------epp~~~v~Il~tt~~~kl~~tI~S--Rc~~-i~f~~ls~~el~~~L~~i~k~egi~i 198 (486)
T PRK14953 145 --------EPPPRTIFILCTTEYDKIPPTILS--RCQR-FIFSKPTKEQIKEYLKRICNEEKIEY 198 (486)
T ss_pred --------cCCCCeEEEEEECCHHHHHHHHHH--hceE-EEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 233445677777888899999887 5544 444 788888888887776665553
No 114
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=5.6e-10 Score=124.27 Aligned_cols=166 Identities=16% Similarity=0.235 Sum_probs=107.2
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCC---------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGN--------------- 188 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~--------------- 188 (464)
+|++++|. ..++..+++.+.. -+.+..+|||||||||||++|+++|+.+.....
T Consensus 16 ~f~dIiGQ---------e~~v~~L~~aI~~--~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~ 84 (725)
T PRK07133 16 TFDDIVGQ---------DHIVQTLKNIIKS--NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVN 84 (725)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhc
Confidence 45677775 2233444454443 367889999999999999999999999865310
Q ss_pred --------CC---ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCC
Q 012418 189 --------AG---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257 (464)
Q Consensus 189 --------~G---e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ld 257 (464)
-+ .....||++...+...--.+...|+||||+|.+... ..+. |+..++
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~------------A~NA-LLKtLE-------- 143 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS------------AFNA-LLKTLE-------- 143 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH------------HHHH-HHHHhh--------
Confidence 00 124457777766522222567789999999976321 2333 444444
Q ss_pred CccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCChh-----HHHHHhcCCCh
Q 012418 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKE-----DIVKLVDTFPG 329 (464)
Q Consensus 258 G~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~~~-----~la~lt~gfsg 329 (464)
+....+.+|++|+.++.|++.++. |+.+ +.+ |+.++..+++..++...++..+ .|++++.|=.+
T Consensus 144 -----EPP~~tifILaTte~~KLl~TI~S--Rcq~-ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 144 -----EPPKHVIFILATTEVHKIPLTILS--RVQR-FNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLR 214 (725)
T ss_pred -----cCCCceEEEEEcCChhhhhHHHHh--hcee-EEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 334456788888899999999987 6654 444 7888888888777665555432 45555555333
No 115
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=9.5e-10 Score=120.89 Aligned_cols=167 Identities=15% Similarity=0.199 Sum_probs=107.6
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCCC---C----------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNA---G---------- 190 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~~---G---------- 190 (464)
+|++++|. ..++..+++++.. -+.|..+|||||+|+|||++|+++|+.+++.... |
T Consensus 22 ~f~dliGq---------~~~v~~L~~~~~~--gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~ 90 (598)
T PRK09111 22 TFDDLIGQ---------EAMVRTLTNAFET--GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE 90 (598)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH
Confidence 56777776 3344555666553 3668899999999999999999999998754110 0
Q ss_pred ---------------------ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhc
Q 012418 191 ---------------------EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 249 (464)
Q Consensus 191 ---------------------e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD 249 (464)
.....||++...+...--.....|+||||+|.+.. ...+.+| ..+.
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------------~a~naLL-KtLE 157 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST------------AAFNALL-KTLE 157 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH------------HHHHHHH-HHHH
Confidence 12345677766552222245678999999987632 1233333 3333
Q ss_pred CCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCC--hh---HHHH
Q 012418 250 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP--KE---DIVK 322 (464)
Q Consensus 250 ~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~--~~---~la~ 322 (464)
+....+.+|++|+.++.|.+.++. |+.. +.+ |+.++....++.++..+++. .+ .|++
T Consensus 158 -------------ePp~~~~fIl~tte~~kll~tI~S--Rcq~-~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~ 221 (598)
T PRK09111 158 -------------EPPPHVKFIFATTEIRKVPVTVLS--RCQR-FDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIAR 221 (598)
T ss_pred -------------hCCCCeEEEEEeCChhhhhHHHHh--heeE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 334456777788888889988876 6644 443 88888888888877666544 33 3355
Q ss_pred HhcCCChh
Q 012418 323 LVDTFPGQ 330 (464)
Q Consensus 323 lt~gfsga 330 (464)
.+.|....
T Consensus 222 ~a~Gdlr~ 229 (598)
T PRK09111 222 AAEGSVRD 229 (598)
T ss_pred HcCCCHHH
Confidence 55554333
No 116
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.14 E-value=3.8e-10 Score=123.59 Aligned_cols=155 Identities=21% Similarity=0.344 Sum_probs=92.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC---CCCC--ChHHHHHHHHHHHHHHHH----hCCcEEEEeccccccccCCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN---GNAG--EPAKLIRQRYREAADIIK----KGKMCCLFINDLDAGAGRMGG 229 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~---~~~G--e~~k~Ir~~F~~A~~~~~----~~~P~ILfIDEIDal~~~r~~ 229 (464)
-|++||+||||-|||+||+.||+++|.. .++. .+...+++....|..+-. -.+|.||+|||||...
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~----- 400 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP----- 400 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----
Confidence 3899999999999999999999999987 2222 234455655555533323 3789999999999322
Q ss_pred CCccchhhHHHHHHHHhhhc--CCCcccCCCcccc------CCCCCceEEEEeCCCCCCchhhccCCc-ceEEEeC-CCH
Q 012418 230 TTQYTVNNQMVNATLMNIAD--NPTNVQLPGMYNQ------EENPRVPIIVTGNDFSTLYAPLIRDGR-MEKFYWA-PTR 299 (464)
Q Consensus 230 ~~~~~~~~~~v~~~L~~llD--~~~~v~ldG~~~~------~~~~~V~VIaTTN~~~~LDpALlRpGR-fD~~i~i-P~~ 299 (464)
+....+++.++. +++.+--.+.-.. ...-..||||.+|+ |+.|-|||-| +-.++++ |+.
T Consensus 401 --------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd---LYaPaLR~Lr~~A~ii~f~~p~ 469 (877)
T KOG1969|consen 401 --------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND---LYAPALRPLRPFAEIIAFVPPS 469 (877)
T ss_pred --------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC---ccchhhhhcccceEEEEecCCC
Confidence 112223333333 2222222111000 01123599999999 7888888887 5555554 444
Q ss_pred HHH-HHHHHhhcCCCCC--ChhHHHHHhcCCCh
Q 012418 300 EDR-IGVCSGIFRTDNV--PKEDIVKLVDTFPG 329 (464)
Q Consensus 300 eeR-~eIl~~~~~~~~v--~~~~la~lt~gfsg 329 (464)
..| .+-++.+...+++ +...|..+++-+.+
T Consensus 470 ~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 470 QSRLVERLNEICHRENMRADSKALNALCELTQN 502 (877)
T ss_pred hhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc
Confidence 444 4555555555544 34466666655443
No 117
>PRK06620 hypothetical protein; Validated
Probab=99.13 E-value=5e-10 Score=108.20 Aligned_cols=162 Identities=16% Similarity=0.150 Sum_probs=91.6
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCC-CcEEEEEcCCCccHHHHHHHHHHHhCCCCCCCChHHHHHHH
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKV-PLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQR 199 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~-p~GLLL~GPPGtGKT~LAkaIA~elg~~~~~Ge~~k~Ir~~ 199 (464)
..|+|+|.+.+. ....+...++++...++..+ -..++||||||||||+|++++++..+.. +..+ .....+.
T Consensus 11 ~~~tfd~Fvvg~------~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~~-~~~~~~~ 82 (214)
T PRK06620 11 SKYHPDEFIVSS------SNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAY-IIKD-IFFNEEI 82 (214)
T ss_pred CCCCchhhEecc------cHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCE-Ecch-hhhchhH
Confidence 356778877551 11335566666654334333 2689999999999999999999987653 1111 0111111
Q ss_pred HHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCC
Q 012418 200 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 279 (464)
Q Consensus 200 F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~ 279 (464)
+ ....+|+||||+.. + ...+..++..+. +.++.+||.++..|..
T Consensus 83 ~---------~~~d~lliDdi~~~--------~----~~~lf~l~N~~~---------------e~g~~ilits~~~p~~ 126 (214)
T PRK06620 83 L---------EKYNAFIIEDIENW--------Q----EPALLHIFNIIN---------------EKQKYLLLTSSDKSRN 126 (214)
T ss_pred H---------hcCCEEEEeccccc--------h----HHHHHHHHHHHH---------------hcCCEEEEEcCCCccc
Confidence 1 12378999999822 1 112222221111 2233455555555554
Q ss_pred --CchhhccCCcceE--EEe--CCCHHHHHHHHHhhcCCCC--CChhHHHHHhcCCCh
Q 012418 280 --LYAPLIRDGRMEK--FYW--APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPG 329 (464)
Q Consensus 280 --LDpALlRpGRfD~--~i~--iP~~eeR~eIl~~~~~~~~--v~~~~la~lt~gfsg 329 (464)
| |+|+. |+.. .+. .|+.+.+.++++......+ ++.+.+.-++..+++
T Consensus 127 l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~ 181 (214)
T PRK06620 127 FTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR 181 (214)
T ss_pred cch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 4 66665 7762 233 4999999999877765443 455555445544443
No 118
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.13 E-value=6.2e-10 Score=95.61 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=69.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCC-------CCCCChH-HHHHHH--HHHHHHHHHhCCcEEEEeccccccc
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM---GIN-------GNAGEPA-KLIRQR--YREAADIIKKGKMCCLFINDLDAGA 224 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el---g~~-------~~~Ge~~-k~Ir~~--F~~A~~~~~~~~P~ILfIDEIDal~ 224 (464)
..+.++|+||||||||++++.+++++ +.+ ....... ...... +...........+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45689999999999999999999998 444 1111100 000000 0111112235678999999999761
Q ss_pred cCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC--CCchhhccCCcceEEEeCC
Q 012418 225 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYWAP 297 (464)
Q Consensus 225 ~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~--~LDpALlRpGRfD~~i~iP 297 (464)
.. ....+..++. +.... . ....++.+|+|||... .+++.+.. ||+..+.+|
T Consensus 98 ~~-------------~~~~~~~~i~-----~~~~~-~-~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG-------------AQNALLRVLE-----TLNDL-R-IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH-------------HHHHHHHHHH-----hcCce-e-ccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 11 1112323332 00000 0 1246789999999988 67777775 888777664
No 119
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.13 E-value=5.7e-10 Score=125.54 Aligned_cols=133 Identities=18% Similarity=0.253 Sum_probs=86.0
Q ss_pred CCc-EEEEEcCCCccHHHHHHHHHHHhCCC-------C---------CCCChHHHH----HHHHHHHHHHHHhCCcEEEE
Q 012418 158 VPL-ILGIWGGKGQGKSFQCELVFAKMGIN-------G---------NAGEPAKLI----RQRYREAADIIKKGKMCCLF 216 (464)
Q Consensus 158 ~p~-GLLL~GPPGtGKT~LAkaIA~elg~~-------~---------~~Ge~~k~I----r~~F~~A~~~~~~~~P~ILf 216 (464)
.|. .+||+||||||||++|+++|+.++.+ . .+|.+...+ ...+. +.++....||||
T Consensus 486 kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~---~~v~~~p~sVll 562 (758)
T PRK11034 486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLT---DAVIKHPHAVLL 562 (758)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHH---HHHHhCCCcEEE
Confidence 344 58999999999999999999999765 1 112110000 01111 123455669999
Q ss_pred eccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC-------------------
Q 012418 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF------------------- 277 (464)
Q Consensus 217 IDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~------------------- 277 (464)
|||||+.. ..+.+.|++++|+-..+.-.|. .....+++||+|||.-
T Consensus 563 lDEieka~-------------~~v~~~LLq~ld~G~ltd~~g~--~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~ 627 (758)
T PRK11034 563 LDEIEKAH-------------PDVFNLLLQVMDNGTLTDNNGR--KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTD 627 (758)
T ss_pred eccHhhhh-------------HHHHHHHHHHHhcCeeecCCCc--eecCCCcEEEEeCCcCHHHHhhcccCcccchhhHH
Confidence 99999873 2356778888874333211221 2334678999999932
Q ss_pred ------CCCchhhccCCcceEEEeC--CCHHHHHHHHHhhc
Q 012418 278 ------STLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 278 ------~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~ 310 (464)
..+.|+|+. |+|.++.+ .+.++..+|+...+
T Consensus 628 ~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 628 AMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred HHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 236688875 99988886 57788888865443
No 120
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.13 E-value=1e-09 Score=104.66 Aligned_cols=172 Identities=16% Similarity=0.126 Sum_probs=94.2
Q ss_pred ccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----CCCCChHHHHH
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----GNAGEPAKLIR 197 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----~~~Ge~~k~Ir 197 (464)
.++|++...+ -++..+..++++.. ...+..++|+||||||||++|+++++++... .++. ...+.
T Consensus 11 ~~~~~~~~~~-------~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~--~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAG-------GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP--LAELA 78 (226)
T ss_pred chhhcCcCcC-------CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe--HHHHH
Confidence 3566776632 12334455555543 3457799999999999999999999987532 1111 11111
Q ss_pred HHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC-
Q 012418 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND- 276 (464)
Q Consensus 198 ~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~- 276 (464)
.......+. ...+.+|+|||+|.+..... ....|..+++ . ....+..+|+|||.
T Consensus 79 ~~~~~~~~~--~~~~~lLvIDdi~~l~~~~~-----------~~~~L~~~l~---------~---~~~~~~~iIits~~~ 133 (226)
T TIGR03420 79 QADPEVLEG--LEQADLVCLDDVEAIAGQPE-----------WQEALFHLYN---------R---VREAGGRLLIAGRAA 133 (226)
T ss_pred HhHHHHHhh--cccCCEEEEeChhhhcCChH-----------HHHHHHHHHH---------H---HHHcCCeEEEECCCC
Confidence 111111111 12346999999997744311 0112333333 0 00111256667664
Q ss_pred CCCCc---hhhccCCcceEEEeC--CCHHHHHHHHHhhcCC--CCCChhHHHHHhcCCChh
Q 012418 277 FSTLY---APLIRDGRMEKFYWA--PTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQ 330 (464)
Q Consensus 277 ~~~LD---pALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~--~~v~~~~la~lt~gfsga 330 (464)
+..++ +.|.++..+...+.+ |+.+++..+++.+... -.++.+.+..+...++|.
T Consensus 134 ~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn 194 (226)
T TIGR03420 134 PAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRD 194 (226)
T ss_pred hHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 33332 666653333456666 6789998888765433 345566666666655554
No 121
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.12 E-value=4.6e-10 Score=125.73 Aligned_cols=138 Identities=19% Similarity=0.272 Sum_probs=86.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC-CC---CCChHHHHHHHHHHHHHHHH-hCCcEEEEeccccccccCCCCCCccch
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN-GN---AGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTV 235 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~-~~---~Ge~~k~Ir~~F~~A~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~ 235 (464)
.+|||||||||||++|+++|++++.+ .. .....+.+++.+..+.+.+. ..+..+|||||||.+...
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~--------- 124 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA--------- 124 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH---------
Confidence 67999999999999999999998765 11 11122345566665533333 346789999999875321
Q ss_pred hhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEe--CCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcC
Q 012418 236 NNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311 (464)
Q Consensus 236 ~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTT--N~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~ 311 (464)
....|+..++ ...+.+|++| |....++++|+++++ .+.+ ++.+++..|++.++.
T Consensus 125 ----qQdaLL~~lE---------------~g~IiLI~aTTenp~~~l~~aL~SR~~---v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 125 ----QQDALLPWVE---------------NGTITLIGATTENPYFEVNKALVSRSR---LFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred ----HHHHHHHHhc---------------CceEEEEEecCCChHhhhhhHhhcccc---ceecCCCCHHHHHHHHHHHHH
Confidence 1223433332 2345566544 444578999997544 3444 788999999877664
Q ss_pred -------CC--CCChhHHHHHhcCCCh
Q 012418 312 -------TD--NVPKEDIVKLVDTFPG 329 (464)
Q Consensus 312 -------~~--~v~~~~la~lt~gfsg 329 (464)
.. .++.+.+..++...+|
T Consensus 183 ~~~~~~g~~~v~I~deaL~~La~~s~G 209 (725)
T PRK13341 183 DKERGYGDRKVDLEPEAEKHLVDVANG 209 (725)
T ss_pred HHHhhcCCcccCCCHHHHHHHHHhCCC
Confidence 22 4555555555544444
No 122
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.4e-09 Score=120.03 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=101.7
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 186 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------- 186 (464)
+|+.++|. ..+...+++++... +.+..+|||||||+|||++|+++|+.++..
T Consensus 14 ~f~~liGq---------~~i~~~L~~~l~~~--rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 14 RFDELVGQ---------EAIATTLKNALISN--RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred cHhhccCh---------HHHHHHHHHHHHcC--CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 45666765 22333344444432 356689999999999999999999998752
Q ss_pred --------------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCC
Q 012418 187 --------------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 252 (464)
Q Consensus 187 --------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~ 252 (464)
...+.....||++...+...-..+...|+||||+|.+-. ...+. |+..++
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~------------~a~na-LLK~LE--- 146 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST------------AAFNA-LLKTLE--- 146 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH------------HHHHH-HHHHHh---
Confidence 011233456777776652211245668999999987632 12233 344444
Q ss_pred cccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe-CCCHHHHHHHHHhhcCCCC--CChh---HHHHHhcC
Q 012418 253 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKE---DIVKLVDT 326 (464)
Q Consensus 253 ~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~--v~~~---~la~lt~g 326 (464)
+....+.+|++|++++.|.+.|+. |+..+.. -|+.++....+..+....+ ++.+ .|++.+.|
T Consensus 147 ----------ePp~~tvfIL~t~~~~~llpTIrS--Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 147 ----------EPPPRVVFVLATTDPQRVLPTIIS--RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred ----------cCCcCeEEEEEeCChhhhhHHHHh--heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 334556788888899999999876 6655433 2667766666655554443 3333 44445544
Q ss_pred CC
Q 012418 327 FP 328 (464)
Q Consensus 327 fs 328 (464)
-.
T Consensus 215 ~l 216 (620)
T PRK14948 215 GL 216 (620)
T ss_pred CH
Confidence 33
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=1.6e-09 Score=118.92 Aligned_cols=164 Identities=13% Similarity=0.160 Sum_probs=100.0
Q ss_pred cccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCC------C-------
Q 012418 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGN------A------- 189 (464)
Q Consensus 123 ~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~------~------- 189 (464)
-+|++++|. ..++..+++.+... +.+..+|||||||+|||++|+++|+.++.... .
T Consensus 13 ~~~~eiiGq---------~~~~~~L~~~i~~~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~ 81 (585)
T PRK14950 13 QTFAELVGQ---------EHVVQTLRNAIAEG--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCR 81 (585)
T ss_pred CCHHHhcCC---------HHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHH
Confidence 356787876 23334445555432 46778999999999999999999999864210 0
Q ss_pred -----------------CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCC
Q 012418 190 -----------------GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 252 (464)
Q Consensus 190 -----------------Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~ 252 (464)
......+|++...+...-......||||||+|.+.. ...+. |+..++
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~------------~a~na-LLk~LE--- 145 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST------------AAFNA-LLKTLE--- 145 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH------------HHHHH-HHHHHh---
Confidence 112234455444331111135567999999986632 12333 334444
Q ss_pred cccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCC--CChh---HHHHHhc
Q 012418 253 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN--VPKE---DIVKLVD 325 (464)
Q Consensus 253 ~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~--v~~~---~la~lt~ 325 (464)
+....+++|++|++.+.+.+.+.. |+.+ +.+ ++.++..+++..+....+ ++.+ .|++.+.
T Consensus 146 ----------epp~~tv~Il~t~~~~kll~tI~S--R~~~-i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~ 212 (585)
T PRK14950 146 ----------EPPPHAIFILATTEVHKVPATILS--RCQR-FDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAAT 212 (585)
T ss_pred ----------cCCCCeEEEEEeCChhhhhHHHHh--ccce-eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 223456777788888888888876 5554 344 778888888777765554 4444 4444444
Q ss_pred C
Q 012418 326 T 326 (464)
Q Consensus 326 g 326 (464)
|
T Consensus 213 G 213 (585)
T PRK14950 213 G 213 (585)
T ss_pred C
Confidence 4
No 124
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=4.4e-10 Score=122.94 Aligned_cols=173 Identities=14% Similarity=0.176 Sum_probs=107.7
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCC---------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGN--------------- 188 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~--------------- 188 (464)
+|++++|. ..+...+++.+. .-+.|.++||+||||+|||++|+++|+.+....+
T Consensus 14 ~F~dIIGQ---------e~iv~~L~~aI~--~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 14 NFKQIIGQ---------ELIKKILVNAIL--NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred CHHHhcCc---------HHHHHHHHHHHH--cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 45677775 223333344433 3366789999999999999999999999864200
Q ss_pred ----------C----CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 189 ----------A----GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 189 ----------~----Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
+ .-....||++...+...--.....|++|||+|.+-.. .. ..|+..++
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~------------A~-NaLLKtLE----- 144 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS------------AW-NALLKTLE----- 144 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH------------HH-HHHHHHHH-----
Confidence 0 0123346666655421111345579999999976321 12 23545554
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCC--CChh---HHHHHhcCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN--VPKE---DIVKLVDTF 327 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~--v~~~---~la~lt~gf 327 (464)
+....+.+|++|+.+..|.+++++ |+.. +.+ |+.++....+..++...+ ++.+ .+++++.|-
T Consensus 145 --------EPp~~tvfIL~Tt~~~KLl~TI~S--Rcq~-ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd 213 (605)
T PRK05896 145 --------EPPKHVVFIFATTEFQKIPLTIIS--RCQR-YNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS 213 (605)
T ss_pred --------hCCCcEEEEEECCChHhhhHHHHh--hhhh-cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 334456788888889999999987 5554 444 788888888877765554 4444 455566554
Q ss_pred ChhhHHHHH
Q 012418 328 PGQSIDFFG 336 (464)
Q Consensus 328 sgadLd~~~ 336 (464)
.+..+..+.
T Consensus 214 lR~AlnlLe 222 (605)
T PRK05896 214 LRDGLSILD 222 (605)
T ss_pred HHHHHHHHH
Confidence 444444443
No 125
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.11 E-value=6.6e-10 Score=103.99 Aligned_cols=124 Identities=14% Similarity=0.098 Sum_probs=83.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC----------------------------CCCC--ChHHHHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------------------GNAG--EPAKLIRQRYREAADI 206 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------------------~~~G--e~~k~Ir~~F~~A~~~ 206 (464)
+.|..+|||||||+|||++|+++++++... ...+ -....++++.+.+...
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccC
Confidence 567899999999999999999999997531 0001 1234566656555222
Q ss_pred HHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhcc
Q 012418 207 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 286 (464)
Q Consensus 207 ~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlR 286 (464)
-......|+||||+|.+... ..+. |+..++ +....+.+|++||+++.|++++.+
T Consensus 92 ~~~~~~kviiide~~~l~~~------------~~~~-Ll~~le-------------~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMNEA------------AANA-LLKTLE-------------EPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred cccCCeEEEEEechhhhCHH------------HHHH-HHHHhc-------------CCCCCeEEEEEECChHhChHHHHh
Confidence 22466789999999876432 1223 334444 233456678888888999999987
Q ss_pred CCcceEEEeC--CCHHHHHHHHHhh
Q 012418 287 DGRMEKFYWA--PTREDRIGVCSGI 309 (464)
Q Consensus 287 pGRfD~~i~i--P~~eeR~eIl~~~ 309 (464)
|+. .+.+ |+.++..+++...
T Consensus 146 --r~~-~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 146 --RCQ-VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred --hcE-EeeCCCCCHHHHHHHHHHc
Confidence 553 4555 7899988888765
No 126
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.10 E-value=1.4e-10 Score=112.35 Aligned_cols=176 Identities=19% Similarity=0.227 Sum_probs=95.1
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC--C----CCCC--Ch
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI--N----GNAG--EP 192 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~--~----~~~G--e~ 192 (464)
.+|+|+|.+.+.. .+.+.+.+++....++... ..+.||||+|+|||+|..||++++.. + .|+. +.
T Consensus 3 ~~~tFdnfv~g~~------N~~a~~~~~~ia~~~~~~~-~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGES------NELAYAAAKAIAENPGERY-NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTT------THHHHHHHHHHHHSTTTSS-SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCc------HHHHHHHHHHHHhcCCCCC-CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 3688999864311 2456677777766655522 34789999999999999999998642 1 1221 11
Q ss_pred HHHHHHHHHH--HHHHH-HhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 012418 193 AKLIRQRYRE--AADII-KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269 (464)
Q Consensus 193 ~k~Ir~~F~~--A~~~~-~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~ 269 (464)
...+...+.. ..+.. +-....+|+|||++.+.++. .....|+.+++ . ....+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~-----------~~q~~lf~l~n---------~---~~~~~k~ 132 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQ-----------RTQEELFHLFN---------R---LIESGKQ 132 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHH-----------HHHHHHHHHHH---------H---HHHTTSE
T ss_pred HHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCch-----------HHHHHHHHHHH---------H---HHhhCCe
Confidence 1111111110 00111 13456799999999886542 12344555554 1 1112336
Q ss_pred EEEEeCC-CCCC---chhhccCCcceE--EEeC--CCHHHHHHHHHhhcCCCCC--ChhHHHHHhcCCC
Q 012418 270 IIVTGND-FSTL---YAPLIRDGRMEK--FYWA--PTREDRIGVCSGIFRTDNV--PKEDIVKLVDTFP 328 (464)
Q Consensus 270 VIaTTN~-~~~L---DpALlRpGRfD~--~i~i--P~~eeR~eIl~~~~~~~~v--~~~~la~lt~gfs 328 (464)
+|+|++. |..| ++.|.. ||.- .+.+ |+.+.|.+|++......++ +.+.+.-++..++
T Consensus 133 li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~ 199 (219)
T PF00308_consen 133 LILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR 199 (219)
T ss_dssp EEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT
T ss_pred EEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc
Confidence 7777744 4544 555654 4443 3444 9999999998877655444 4444444444443
No 127
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.10 E-value=1.5e-09 Score=108.44 Aligned_cols=150 Identities=15% Similarity=0.186 Sum_probs=89.0
Q ss_pred HHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC-------C---CCChHHHHHHHHHHHHHHHH--hC
Q 012418 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING-------N---AGEPAKLIRQRYREAADIIK--KG 210 (464)
Q Consensus 143 ~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~-------~---~Ge~~k~Ir~~F~~A~~~~~--~~ 210 (464)
++..++++++.... | .+|||||||||||++++++++++.... . .+.....+++.+........ ..
T Consensus 25 ~~~~l~~~i~~~~~--~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (319)
T PRK00440 25 IVERLKSYVKEKNM--P-HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGA 101 (319)
T ss_pred HHHHHHHHHhCCCC--C-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCC
Confidence 44555666654322 2 479999999999999999999974321 0 11111223333322211111 13
Q ss_pred CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcc
Q 012418 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 290 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRf 290 (464)
.+.+|+|||+|.+.... ...|..+++ .......+|+++|.+..+.+++.+ |+
T Consensus 102 ~~~vviiDe~~~l~~~~-------------~~~L~~~le-------------~~~~~~~lIl~~~~~~~l~~~l~s--r~ 153 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-------------QQALRRTME-------------MYSQNTRFILSCNYSSKIIDPIQS--RC 153 (319)
T ss_pred CceEEEEeCcccCCHHH-------------HHHHHHHHh-------------cCCCCCeEEEEeCCccccchhHHH--Hh
Confidence 46799999998773220 123444444 122345678888998889888887 44
Q ss_pred eEEEeC--CCHHHHHHHHHhhcCCCCC--ChhHHHHHh
Q 012418 291 EKFYWA--PTREDRIGVCSGIFRTDNV--PKEDIVKLV 324 (464)
Q Consensus 291 D~~i~i--P~~eeR~eIl~~~~~~~~v--~~~~la~lt 324 (464)
.. +.+ |+.++...++..++...++ +.+.+..++
T Consensus 154 ~~-~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~ 190 (319)
T PRK00440 154 AV-FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIY 190 (319)
T ss_pred he-eeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44 343 7888888888777765554 444443333
No 128
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.10 E-value=6.6e-10 Score=118.47 Aligned_cols=187 Identities=13% Similarity=0.124 Sum_probs=107.3
Q ss_pred ccccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC--C----CCCCC--
Q 012418 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI--N----GNAGE-- 191 (464)
Q Consensus 120 ~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~--~----~~~Ge-- 191 (464)
+..|+|+|.+.+. . .+.+...++.+...+|. ....++||||+|||||+|++++++++.. + .|+..
T Consensus 109 l~~~tFdnFv~g~----~--n~~A~~aa~~~a~~~~~-~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~ 181 (450)
T PRK14087 109 INENTFENFVIGS----S--NEQAFIAVQTVSKNPGI-SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE 181 (450)
T ss_pred ccccchhcccCCC----c--HHHHHHHHHHHHhCcCc-ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 3357889987552 1 13345566666665554 2356999999999999999999998642 1 12211
Q ss_pred hHHHHHHHHHH---HHHHHH--hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCC
Q 012418 192 PAKLIRQRYRE---AADIIK--KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266 (464)
Q Consensus 192 ~~k~Ir~~F~~---A~~~~~--~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~ 266 (464)
....+...+.. ..+..+ ...+.+|+|||++.+.++.. ....|+.+++ . ....
T Consensus 182 f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~-----------~~e~lf~l~N---------~---~~~~ 238 (450)
T PRK14087 182 FARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEK-----------TNEIFFTIFN---------N---FIEN 238 (450)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHH-----------HHHHHHHHHH---------H---HHHc
Confidence 11111111111 111111 34567999999998765422 1122333333 1 1112
Q ss_pred CceEEEEeCCCC----CCchhhccCCcce--EEEeC--CCHHHHHHHHHhhcCCCC----CChhHHHHHhcCCChhhHHH
Q 012418 267 RVPIIVTGNDFS----TLYAPLIRDGRME--KFYWA--PTREDRIGVCSGIFRTDN----VPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 267 ~V~VIaTTN~~~----~LDpALlRpGRfD--~~i~i--P~~eeR~eIl~~~~~~~~----v~~~~la~lt~gfsgadLd~ 334 (464)
+..||+|+|.+- .+++.|.. ||. ..+.+ |+.++|.+|++..+...+ ++.+.+.-++..++|..-..
T Consensus 239 ~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L 316 (450)
T PRK14087 239 DKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKI 316 (450)
T ss_pred CCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHH
Confidence 236888888642 34566765 554 33334 999999999988776543 56666666666666543333
Q ss_pred HHHH
Q 012418 335 FGAL 338 (464)
Q Consensus 335 ~~al 338 (464)
.++|
T Consensus 317 ~gaL 320 (450)
T PRK14087 317 KGSV 320 (450)
T ss_pred HHHH
Confidence 3443
No 129
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=7.4e-10 Score=116.10 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=98.7
Q ss_pred cccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC---------------
Q 012418 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING--------------- 187 (464)
Q Consensus 123 ~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~--------------- 187 (464)
-+|++++|. ..+...+++++. .-+.|..+|||||||||||++|+++|+++....
T Consensus 13 ~~~~eiiGq---------~~~~~~L~~~~~--~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c 81 (397)
T PRK14955 13 KKFADITAQ---------EHITRTIQNSLR--MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC 81 (397)
T ss_pred CcHhhccCh---------HHHHHHHHHHHH--hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence 356777776 233344555554 336788999999999999999999999997621
Q ss_pred -------------------CCCC---hHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHH
Q 012418 188 -------------------NAGE---PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 245 (464)
Q Consensus 188 -------------------~~Ge---~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~ 245 (464)
.-|. ....|+++...+...-......|+||||+|.+... ..+. |+
T Consensus 82 ~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------------~~~~-LL 148 (397)
T PRK14955 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------------AFNA-FL 148 (397)
T ss_pred CCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH------------HHHH-HH
Confidence 0111 12345554433311111345579999999876321 1222 33
Q ss_pred hhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCC--CChh---
Q 012418 246 NIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN--VPKE--- 318 (464)
Q Consensus 246 ~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~--v~~~--- 318 (464)
..+. +..+...+|++|+++..|.+++.+ |+. .+.+ ++.++..+.+..++...+ ++.+
T Consensus 149 k~LE-------------ep~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~ 212 (397)
T PRK14955 149 KTLE-------------EPPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQ 212 (397)
T ss_pred HHHh-------------cCCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3333 333445677777788899998887 443 2444 677777777776665544 4443
Q ss_pred HHHHHhcC
Q 012418 319 DIVKLVDT 326 (464)
Q Consensus 319 ~la~lt~g 326 (464)
.|+..+.|
T Consensus 213 ~l~~~s~g 220 (397)
T PRK14955 213 LIGRKAQG 220 (397)
T ss_pred HHHHHcCC
Confidence 44445544
No 130
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.09 E-value=7e-10 Score=106.69 Aligned_cols=167 Identities=15% Similarity=0.195 Sum_probs=91.1
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC---C-CCCCChHHHH
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI---N-GNAGEPAKLI 196 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~---~-~~~Ge~~k~I 196 (464)
+.++|++..++. +......++++.. +...+..++|+||||||||+||+++++++.- + .++.-. . .
T Consensus 13 ~~~~~d~f~~~~-------~~~~~~~l~~~~~--~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~-~ 81 (227)
T PRK08903 13 PPPTFDNFVAGE-------NAELVARLRELAA--GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-S-P 81 (227)
T ss_pred ChhhhcccccCC-------cHHHHHHHHHHHh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-H-h
Confidence 456778876331 1223445555544 3455678999999999999999999998722 2 111111 1 1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC
Q 012418 197 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276 (464)
Q Consensus 197 r~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~ 276 (464)
...+. ......+|+|||+|.+... . ...|..+++. . .......+|+|++.
T Consensus 82 ~~~~~------~~~~~~~liiDdi~~l~~~----~---------~~~L~~~~~~--------~---~~~~~~~vl~~~~~ 131 (227)
T PRK08903 82 LLAFD------FDPEAELYAVDDVERLDDA----Q---------QIALFNLFNR--------V---RAHGQGALLVAGPA 131 (227)
T ss_pred HHHHh------hcccCCEEEEeChhhcCch----H---------HHHHHHHHHH--------H---HHcCCcEEEEeCCC
Confidence 11111 1234679999999976321 1 1223344430 0 11223335555554
Q ss_pred CC---CCchhhccCCcc--eEEEeC--CCHHHHHHHHHhhcCCC--CCChhHHHHHhcCCChh
Q 012418 277 FS---TLYAPLIRDGRM--EKFYWA--PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQ 330 (464)
Q Consensus 277 ~~---~LDpALlRpGRf--D~~i~i--P~~eeR~eIl~~~~~~~--~v~~~~la~lt~gfsga 330 (464)
+. .+.+.|.. || ...+.+ |+.+++..++..+.... .++.+.+..+...++|.
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn 192 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRD 192 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 32 23455553 44 345665 67777788877655443 44455555555555543
No 131
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.09 E-value=4.6e-10 Score=95.08 Aligned_cols=115 Identities=19% Similarity=0.228 Sum_probs=69.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC----------C------------------CCCChHHHHHHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN----------G------------------NAGEPAKLIRQRYREAADIIKKG 210 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~----------~------------------~~Ge~~k~Ir~~F~~A~~~~~~~ 210 (464)
+..++|+||||||||++++.+|..+... . ........++..+..| +..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA----RKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH----Hhc
Confidence 4679999999999999999999998764 0 0112233444444444 766
Q ss_pred CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcc
Q 012418 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 290 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRf 290 (464)
.|.||||||++.+....... . +..... ....+.........+|+|+|......+..+++ |+
T Consensus 78 ~~~viiiDei~~~~~~~~~~---------~---~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~ 138 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEA---------L---LLLLEE------LRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RF 138 (148)
T ss_pred CCCEEEEECCcccCCHHHHH---------H---HHhhhh------hHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-cc
Confidence 68999999999876543200 0 000000 00000112345678999999744445555554 88
Q ss_pred eEEEeC
Q 012418 291 EKFYWA 296 (464)
Q Consensus 291 D~~i~i 296 (464)
+..+.+
T Consensus 139 ~~~~~~ 144 (148)
T smart00382 139 DRRIVL 144 (148)
T ss_pred ceEEEe
Confidence 887765
No 132
>PRK08116 hypothetical protein; Validated
Probab=99.08 E-value=4.3e-10 Score=112.22 Aligned_cols=133 Identities=21% Similarity=0.323 Sum_probs=77.1
Q ss_pred ccccccccccccccCccCcchhhhhHHHHHHHHhhhhC-C-CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCCCCCC
Q 012418 116 ISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNL-P-NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINGNAG 190 (464)
Q Consensus 116 ~~~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~-~-gi~~p~GLLL~GPPGtGKT~LAkaIA~el---g~~~~~G 190 (464)
++..++.++|+|...+ +. ...+...+++|+.. . ....++|++|||+||||||+||.+||+++ +.+...-
T Consensus 75 i~~~~~~~tFdnf~~~----~~--~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 75 LDEKFRNSTFENFLFD----KG--SEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred CCHHHHhcchhcccCC----hH--HHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4566777888887643 11 12244556655541 1 12345789999999999999999999997 3331111
Q ss_pred ChHH---HHHHHHHH-----HHHHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccc
Q 012418 191 EPAK---LIRQRYRE-----AADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 261 (464)
Q Consensus 191 e~~k---~Ir~~F~~-----A~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~ 261 (464)
.... .++..|.. ..+.++ .....+|+|||+...... .-....|+++++ .
T Consensus 149 ~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t-----------~~~~~~l~~iin---------~-- 206 (268)
T PRK08116 149 NFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDT-----------EWAREKVYNIID---------S-- 206 (268)
T ss_pred EHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCC-----------HHHHHHHHHHHH---------H--
Confidence 1222 22222211 112222 334569999999642111 122345667777 2
Q ss_pred cCCCCCceEEEEeCCC
Q 012418 262 QEENPRVPIIVTGNDF 277 (464)
Q Consensus 262 ~~~~~~V~VIaTTN~~ 277 (464)
....+.++|+|||.+
T Consensus 207 -r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 207 -RYRKGLPTIVTTNLS 221 (268)
T ss_pred -HHHCCCCEEEECCCC
Confidence 334557899999975
No 133
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.07 E-value=4.2e-10 Score=115.12 Aligned_cols=133 Identities=15% Similarity=0.139 Sum_probs=87.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC-------------CCCCChHHHH----------HHHHHHHHHHHHhCCcEE
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN-------------GNAGEPAKLI----------RQRYREAADIIKKGKMCC 214 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------------~~~Ge~~k~I----------r~~F~~A~~~~~~~~P~I 214 (464)
..+.|||.||||||||++|+.+|++++++ ..+|...-.+ ...+-.| ...+++
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A-----~~~g~i 137 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWA-----LQHNVA 137 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhH-----HhCCeE
Confidence 35679999999999999999999999987 3455432111 1122233 245789
Q ss_pred EEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCcc-ccCCCCCceEEEEeCCCC------------CCc
Q 012418 215 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY-NQEENPRVPIIVTGNDFS------------TLY 281 (464)
Q Consensus 215 LfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~-~~~~~~~V~VIaTTN~~~------------~LD 281 (464)
||+||||.... .+...|..+++....+.+++.- .-...+...||+|+|..+ .|+
T Consensus 138 lllDEin~a~p-------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~ 204 (327)
T TIGR01650 138 LCFDEYDAGRP-------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQIN 204 (327)
T ss_pred EEechhhccCH-------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCC
Confidence 99999996522 1334455666643233333221 111234667999999866 457
Q ss_pred hhhccCCcceEEEeC--CCHHHHHHHHHhhc
Q 012418 282 APLIRDGRMEKFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 282 pALlRpGRfD~~i~i--P~~eeR~eIl~~~~ 310 (464)
+|++. ||-..+.+ |+.++-.+|+....
T Consensus 205 ~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 205 QAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 88886 88776665 89999899987654
No 134
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=3.9e-09 Score=115.47 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=98.4
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..++..+++.+.. -+.|..+|||||||+|||++|+++|+.++...
T Consensus 14 ~f~diiGq---------e~iv~~L~~~i~~--~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i 82 (563)
T PRK06647 14 DFNSLEGQ---------DFVVETLKHSIES--NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI 82 (563)
T ss_pred CHHHccCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence 45777876 2333344555443 25678999999999999999999999987520
Q ss_pred ----------CCC---ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 188 ----------NAG---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 188 ----------~~G---e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
.-| .....||++...+...-......|+||||+|.+-. ...+.+| ..++
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~------------~a~naLL-K~LE----- 144 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN------------SAFNALL-KTIE----- 144 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH------------HHHHHHH-Hhhc-----
Confidence 111 12345555554441111246678999999986622 1233333 3344
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe-CCCHHHHHHHHHhhcCCCCCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP 316 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~v~ 316 (464)
+....+.+|++|+.+..|.++|+. |+..+-. .|+.++..+++..+....++.
T Consensus 145 --------epp~~~vfI~~tte~~kL~~tI~S--Rc~~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 145 --------EPPPYIVFIFATTEVHKLPATIKS--RCQHFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred --------cCCCCEEEEEecCChHHhHHHHHH--hceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 334556778888889999999887 5554333 378888888877776555544
No 135
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.06 E-value=5.2e-10 Score=118.66 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=72.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------------------CCC-CC-----hHHHHHHHHHHHHHHHHh--CC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------------------GNA-GE-----PAKLIRQRYREAADIIKK--GK 211 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------------------~~~-Ge-----~~k~Ir~~F~~A~~~~~~--~~ 211 (464)
..+.++|+||||||||++|+.+|..+... ..+ |- .-......|.++...++. ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 35689999999999999999999987532 111 10 001112244333333342 46
Q ss_pred cEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCC---cccCCCcccc------CCCCCceEEEEeCCCC----
Q 012418 212 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT---NVQLPGMYNQ------EENPRVPIIVTGNDFS---- 278 (464)
Q Consensus 212 P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~---~v~ldG~~~~------~~~~~V~VIaTTN~~~---- 278 (464)
|++||||||+..-..+ +-..++.++++.. ...++=.+.+ .-..++.||+|.|..+
T Consensus 273 ~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 273 KYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred CcEEEEehhhccCHHH------------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 8999999998653221 1111233333210 0001000000 2236789999999998
Q ss_pred CCchhhccCCcceEEEeC-CC
Q 012418 279 TLYAPLIRDGRMEKFYWA-PT 298 (464)
Q Consensus 279 ~LDpALlRpGRfD~~i~i-P~ 298 (464)
.||.||+| ||.. +++ |+
T Consensus 341 ~lD~AlrR--RF~f-i~i~p~ 358 (459)
T PRK11331 341 VVDYALRR--RFSF-IDIEPG 358 (459)
T ss_pred hccHHHHh--hhhe-EEecCC
Confidence 89999999 6744 444 54
No 136
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=5e-09 Score=115.63 Aligned_cols=164 Identities=14% Similarity=0.155 Sum_probs=102.3
Q ss_pred cccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC---------------
Q 012418 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING--------------- 187 (464)
Q Consensus 123 ~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~--------------- 187 (464)
-+|+.++|. ..++..+++.+. .-+.|.++|||||||||||++|+++|+.+.+..
T Consensus 13 ~~f~eivGQ---------e~i~~~L~~~i~--~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 13 SKFADITAQ---------EHITHTIQNSLR--MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred CCHHHhcCc---------HHHHHHHHHHHH--cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 356777876 344455566554 337788999999999999999999999997621
Q ss_pred -------------------CCCC---hHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHH
Q 012418 188 -------------------NAGE---PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 245 (464)
Q Consensus 188 -------------------~~Ge---~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~ 245 (464)
.-|. ....||++...+...--.+...|+||||+|.+... ..+ .|+
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~------------a~n-aLL 148 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA------------AFN-AFL 148 (620)
T ss_pred ccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH------------HHH-HHH
Confidence 0111 13445555444311111455679999999876321 122 344
Q ss_pred hhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCC--CChh---
Q 012418 246 NIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN--VPKE--- 318 (464)
Q Consensus 246 ~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~--v~~~--- 318 (464)
..++ +....+.+|++|+++..|.+++.. |+.. +.+ ++.++....+..++...+ ++.+
T Consensus 149 K~LE-------------ePp~~tv~IL~t~~~~kLl~TI~S--Rc~~-vef~~l~~~ei~~~L~~i~~~egi~I~~eal~ 212 (620)
T PRK14954 149 KTLE-------------EPPPHAIFIFATTELHKIPATIAS--RCQR-FNFKRIPLDEIQSQLQMICRAEGIQIDADALQ 212 (620)
T ss_pred HHHh-------------CCCCCeEEEEEeCChhhhhHHHHh--hceE-EecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4454 333445666777788999999987 4433 443 677877777777665544 4444
Q ss_pred HHHHHhcC
Q 012418 319 DIVKLVDT 326 (464)
Q Consensus 319 ~la~lt~g 326 (464)
.|+..+.|
T Consensus 213 ~La~~s~G 220 (620)
T PRK14954 213 LIARKAQG 220 (620)
T ss_pred HHHHHhCC
Confidence 44455555
No 137
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.04 E-value=9.2e-11 Score=109.69 Aligned_cols=122 Identities=11% Similarity=0.091 Sum_probs=78.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCC----C-------CCCC--ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccc
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGI----N-------GNAG--EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 224 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~----~-------~~~G--e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~ 224 (464)
|-..+||.||+|||||.+|+++|..+.. + .+.. +....+..++..+-.........||||||||+..
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 3356889999999999999999999995 2 2222 1122233344433222222223499999999998
Q ss_pred cCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchh
Q 012418 225 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283 (464)
Q Consensus 225 ~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpA 283 (464)
.+. .....+....|.+.|+.++++-...--.| ......++++|+|||--......
T Consensus 82 ~~~--~~~~~v~~~~V~~~LL~~le~g~~~d~~g--~~vd~~n~ifI~Tsn~~~~~~~~ 136 (171)
T PF07724_consen 82 PSN--SGGADVSGEGVQNSLLQLLEGGTLTDSYG--RTVDTSNIIFIMTSNFGAEEIID 136 (171)
T ss_dssp HTT--TTCSHHHHHHHHHHHHHHHHHSEEEETTC--CEEEGTTEEEEEEESSSTHHHHH
T ss_pred ccc--cccchhhHHHHHHHHHHHhcccceecccc--eEEEeCCceEEEecccccchhhh
Confidence 762 34556778889999999998432221112 22345788999999986554444
No 138
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=8.1e-09 Score=112.09 Aligned_cols=153 Identities=15% Similarity=0.171 Sum_probs=95.9
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..+...+++.+.. -+.|..+|||||||+|||++|+++|+.+....
T Consensus 12 ~fdeiiGq---------e~v~~~L~~~I~~--grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~ 80 (535)
T PRK08451 12 HFDELIGQ---------ESVSKTLSLALDN--NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSA 80 (535)
T ss_pred CHHHccCc---------HHHHHHHHHHHHc--CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 45777776 2233444444442 35788999999999999999999999985320
Q ss_pred ---------CC-CC---hHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 188 ---------NA-GE---PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 188 ---------~~-Ge---~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
.. +. ....||++...+...-..+...|++|||+|.+.. ...++ |+..+.
T Consensus 81 ~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~------------~A~NA-LLK~LE----- 142 (535)
T PRK08451 81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK------------EAFNA-LLKTLE----- 142 (535)
T ss_pred hhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------HHHHH-HHHHHh-----
Confidence 00 11 1345555554431000124457999999976632 12233 444444
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 316 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~ 316 (464)
+....+.+|.+|+++..|+++++. |+.. +.+ ++.++..+.+..++...++.
T Consensus 143 --------Epp~~t~FIL~ttd~~kL~~tI~S--Rc~~-~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 143 --------EPPSYVKFILATTDPLKLPATILS--RTQH-FRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred --------hcCCceEEEEEECChhhCchHHHh--hcee-EEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 333446678888889999999987 5544 444 67788777777777666654
No 139
>PRK12377 putative replication protein; Provisional
Probab=99.00 E-value=1e-09 Score=108.53 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=76.6
Q ss_pred cccccccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----CCC--C
Q 012418 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----GNA--G 190 (464)
Q Consensus 117 ~~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----~~~--G 190 (464)
+..++..+|+|..... + -.+.+...++.|..... ....+++||||||||||+||.|||+++... .++ .
T Consensus 65 ~~~~~~~tFdnf~~~~---~--~~~~a~~~a~~~a~~~~-~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 65 QPLHRKCSFANYQVQN---D--GQRYALSQAKSIADELM-TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred CcccccCCcCCcccCC---h--hHHHHHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 4455566777765321 1 11224445555554211 124689999999999999999999998433 111 1
Q ss_pred ChHHHHHHHHHHH---HHHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCC
Q 012418 191 EPAKLIRQRYREA---ADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266 (464)
Q Consensus 191 e~~k~Ir~~F~~A---~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~ 266 (464)
+....++..|... .+.++ -.+..||+||||+...... -....|+++++ . ....
T Consensus 139 ~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~-----------~~~~~l~~ii~---------~---R~~~ 195 (248)
T PRK12377 139 DVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETK-----------NEQVVLNQIID---------R---RTAS 195 (248)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCH-----------HHHHHHHHHHH---------H---HHhc
Confidence 1222233322211 11222 4577899999997653221 12356777777 2 4456
Q ss_pred CceEEEEeCCC
Q 012418 267 RVPIIVTGNDF 277 (464)
Q Consensus 267 ~V~VIaTTN~~ 277 (464)
+.|+|+|||..
T Consensus 196 ~~ptiitSNl~ 206 (248)
T PRK12377 196 MRSVGMLTNLN 206 (248)
T ss_pred CCCEEEEcCCC
Confidence 78999999974
No 140
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.99 E-value=2.6e-09 Score=109.80 Aligned_cols=129 Identities=17% Similarity=0.280 Sum_probs=83.4
Q ss_pred HHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-------CCCCChHHHHHHHHHHHHHHHH-hCCcEEEEe
Q 012418 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------GNAGEPAKLIRQRYREAADIIK-KGKMCCLFI 217 (464)
Q Consensus 146 i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------~~~Ge~~k~Ir~~F~~A~~~~~-~~~P~ILfI 217 (464)
+++++++...++ .++||||||||||+||+.|++...-+ .-......-+|++|+.+..+.. ..+..||||
T Consensus 152 llrs~ieq~~ip---SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFi 228 (554)
T KOG2028|consen 152 LLRSLIEQNRIP---SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFI 228 (554)
T ss_pred HHHHHHHcCCCC---ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEe
Confidence 456666654443 57899999999999999999987655 2233345678999999854444 567899999
Q ss_pred ccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEe--CCCCCCchhhccCCcceEEEe
Q 012418 218 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW 295 (464)
Q Consensus 218 DEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTT--N~~~~LDpALlRpGRfD~~i~ 295 (464)
|||..+-.... .+++ + ..+++.|.+|++| |.--.|-.||+.++| .++.
T Consensus 229 DEiHRFNksQQ-------------D~fL-----------P----~VE~G~I~lIGATTENPSFqln~aLlSRC~--VfvL 278 (554)
T KOG2028|consen 229 DEIHRFNKSQQ-------------DTFL-----------P----HVENGDITLIGATTENPSFQLNAALLSRCR--VFVL 278 (554)
T ss_pred HHhhhhhhhhh-------------hccc-----------c----eeccCceEEEecccCCCccchhHHHHhccc--eeEe
Confidence 99974422211 1121 1 1455667777654 445578899998555 3333
Q ss_pred C-CCHHHHHHHHH
Q 012418 296 A-PTREDRIGVCS 307 (464)
Q Consensus 296 i-P~~eeR~eIl~ 307 (464)
. .+.+...-|+.
T Consensus 279 ekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 279 EKLPVNAVVTILM 291 (554)
T ss_pred ccCCHHHHHHHHH
Confidence 2 45555555543
No 141
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=1.2e-08 Score=106.16 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=98.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCC---------------C-------------------------CC----
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINGN---------------A-------------------------GE---- 191 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~---------------~-------------------------Ge---- 191 (464)
-+.|..+||+||+|+||+++|.++|+.+-.... . +.
T Consensus 38 ~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~ 117 (365)
T PRK07471 38 GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRL 117 (365)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccc
Confidence 378899999999999999999999998743200 0 11
Q ss_pred ----hHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCC
Q 012418 192 ----PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267 (464)
Q Consensus 192 ----~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~ 267 (464)
....||++-+.+........|.|++|||+|.+-. ...|. |+..+. +...+
T Consensus 118 ~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------------~aana-LLK~LE-------------epp~~ 171 (365)
T PRK07471 118 RTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------------NAANA-LLKVLE-------------EPPAR 171 (365)
T ss_pred cccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------------HHHHH-HHHHHh-------------cCCCC
Confidence 1233555444432222257789999999986521 22333 434444 34455
Q ss_pred ceEEEEeCCCCCCchhhccCCcceEEEeC-CCHHHHHHHHHhhcCCCCCC-hhHHHHHhcCCChhhHHHH
Q 012418 268 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCSGIFRTDNVP-KEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 268 V~VIaTTN~~~~LDpALlRpGRfD~~i~i-P~~eeR~eIl~~~~~~~~v~-~~~la~lt~gfsgadLd~~ 335 (464)
+.+|++|++++.|.|.++. |+..+-.- |+.++..+++........-. ...++.++.|-++..+.+.
T Consensus 172 ~~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~~~~~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAGPDLPDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhcccCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 6788999999999888765 77664333 78898888887654321111 1367777888777666543
No 142
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.96 E-value=1.5e-08 Score=115.78 Aligned_cols=132 Identities=12% Similarity=0.109 Sum_probs=80.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC----------CCCCChHHHHHHHH------------HHHHHHHHhCCcEEEE
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN----------GNAGEPAKLIRQRY------------REAADIIKKGKMCCLF 216 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~----------~~~Ge~~k~Ir~~F------------~~A~~~~~~~~P~ILf 216 (464)
...+||+||||||||++|+++|..+... .+..+.. +..++ ....+.++....+|||
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~--~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vll 672 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHS--VARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVL 672 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccch--HHHhcCCCCCccCcccccHHHHHHHcCCCcEEE
Confidence 3568899999999999999999987322 1111110 00000 0011122445557999
Q ss_pred eccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCC-----------------
Q 012418 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST----------------- 279 (464)
Q Consensus 217 IDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~----------------- 279 (464)
|||||+.- ..+...|++++++-..+ |+.-......+.+||+|||....
T Consensus 673 lDeieka~-------------~~v~~~Ll~~l~~g~l~--d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~ 737 (852)
T TIGR03346 673 FDEVEKAH-------------PDVFNVLLQVLDDGRLT--DGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREA 737 (852)
T ss_pred EeccccCC-------------HHHHHHHHHHHhcCcee--cCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHH
Confidence 99998652 23456677888743322 21111123466889999998322
Q ss_pred --------CchhhccCCcceEEEeC--CCHHHHHHHHHhh
Q 012418 280 --------LYAPLIRDGRMEKFYWA--PTREDRIGVCSGI 309 (464)
Q Consensus 280 --------LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~ 309 (464)
+.|.|+- |+|.++.+ ++.++..+|+...
T Consensus 738 ~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~ 775 (852)
T TIGR03346 738 VMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQ 775 (852)
T ss_pred HHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHH
Confidence 4466764 99988775 7888888885543
No 143
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.95 E-value=2.9e-09 Score=115.75 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=35.3
Q ss_pred ceEEEEeCCCCCCchhhccCCcceEEEeC-CCHHHHHHHHHhhcCCCCCC
Q 012418 268 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCSGIFRTDNVP 316 (464)
Q Consensus 268 V~VIaTTN~~~~LDpALlRpGRfD~~i~i-P~~eeR~eIl~~~~~~~~v~ 316 (464)
.+|++|||+++.|+|+|++ ||..+... ++.+++.+|++......++.
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~a~k~~i~ 282 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNAAEKIGIN 282 (531)
T ss_pred EEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 3566778899999999997 77664443 67899999988877655443
No 144
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=6.4e-09 Score=106.76 Aligned_cols=149 Identities=15% Similarity=0.172 Sum_probs=101.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC------------------------------CCCC--ChHHHHHHHHHHH
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------------GNAG--EPAKLIRQRYREA 203 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------------------------------~~~G--e~~k~Ir~~F~~A 203 (464)
-+.|.++||+||+|+|||++|+++|+.+... ...+ -....||++-+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999999998652 0011 1345677766665
Q ss_pred HHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchh
Q 012418 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283 (464)
Q Consensus 204 ~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpA 283 (464)
......+...|++|||+|.+-. ...|.+| ..++ +...++.+|.+|++++.|.|.
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~------------~aaNaLL-K~LE-------------EPp~~~~fiL~t~~~~~ll~T 152 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR------------NAANALL-KSLE-------------EPSGDTVLLLISHQPSRLLPT 152 (328)
T ss_pred hhccccCCCeEEEECChhhCCH------------HHHHHHH-HHHh-------------CCCCCeEEEEEECChhhCcHH
Confidence 3333356678999999997633 2233444 4444 444667899999999999999
Q ss_pred hccCCcceEEEe-CCCHHHHHHHHHhhcCCCCCCh---hHHHHHhcCCChhhHHH
Q 012418 284 LIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPK---EDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 284 LlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~v~~---~~la~lt~gfsgadLd~ 334 (464)
++. |+-.+.. .|+.++..+.+..... ..+. ..++.++.|-++..+++
T Consensus 153 I~S--Rc~~~~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 153 IKS--RCQQQACPLPSNEESLQWLQQALP--ESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHh--hceeeeCCCcCHHHHHHHHHHhcc--cCChHHHHHHHHHcCCCHHHHHHH
Confidence 987 6666333 2788888777765431 1222 35667777777766654
No 145
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.93 E-value=6e-09 Score=118.90 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=62.6
Q ss_pred CCCcE-EEEEcCCCccHHHHHHHHHHHhCCC--------------------------CCCCChHHHHHHHHHHHHHHHHh
Q 012418 157 KVPLI-LGIWGGKGQGKSFQCELVFAKMGIN--------------------------GNAGEPAKLIRQRYREAADIIKK 209 (464)
Q Consensus 157 ~~p~G-LLL~GPPGtGKT~LAkaIA~elg~~--------------------------~~~Ge~~k~Ir~~F~~A~~~~~~ 209 (464)
..|.| +||+||||+|||.+|+++|..+.-. .|+|.... ..+. +.+++
T Consensus 593 ~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~---g~L~---~~v~~ 666 (852)
T TIGR03345 593 RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG---GVLT---EAVRR 666 (852)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc---chHH---HHHHh
Confidence 45676 7999999999999999999997311 23332111 1111 22356
Q ss_pred CCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC
Q 012418 210 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276 (464)
Q Consensus 210 ~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~ 276 (464)
...+||+|||||+.- ..+...|++++|+-..+--.|. .....+.+||+|||.
T Consensus 667 ~p~svvllDEieka~-------------~~v~~~Llq~ld~g~l~d~~Gr--~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 667 KPYSVVLLDEVEKAH-------------PDVLELFYQVFDKGVMEDGEGR--EIDFKNTVILLTSNA 718 (852)
T ss_pred CCCcEEEEechhhcC-------------HHHHHHHHHHhhcceeecCCCc--EEeccccEEEEeCCC
Confidence 778999999998532 2345678788884322211121 123467899999996
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.93 E-value=2.6e-08 Score=113.89 Aligned_cols=133 Identities=12% Similarity=0.128 Sum_probs=79.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC------CCCCChH--HHHHHHH------------HHHHHHHHhCCcEEEEeccc
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN------GNAGEPA--KLIRQRY------------REAADIIKKGKMCCLFINDL 220 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~------~~~Ge~~--k~Ir~~F------------~~A~~~~~~~~P~ILfIDEI 220 (464)
.+||+||||||||++|+++|+.+.-. -...+.. ..+..+| ....+.++....+||||||+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEi 679 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEV 679 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeeh
Confidence 58899999999999999999987322 0000100 0111111 00111223444589999999
Q ss_pred cccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC-----------------------
Q 012418 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF----------------------- 277 (464)
Q Consensus 221 Dal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~----------------------- 277 (464)
|+.- ..+...|++++++-..+ ++.-......+.+||+|||..
T Consensus 680 eka~-------------~~v~~~Ll~ile~g~l~--d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~ 744 (857)
T PRK10865 680 EKAH-------------PDVFNILLQVLDDGRLT--DGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGV 744 (857)
T ss_pred hhCC-------------HHHHHHHHHHHhhCcee--cCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHH
Confidence 8542 23456677777733222 111111233567899999973
Q ss_pred --CCCchhhccCCcceEEEeC--CCHHHHHHHHHhhc
Q 012418 278 --STLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 278 --~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~ 310 (464)
..+.|+|+. |+|.++.+ ++.++..+|++.++
T Consensus 745 ~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 745 VSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred HcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHH
Confidence 234577875 89887775 67788778765444
No 147
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.89 E-value=2.2e-08 Score=113.95 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=62.2
Q ss_pred CCCCcE-EEEEcCCCccHHHHHHHHHHHhCC---C----------------CCCCChHHH-----HHHHHHHHHHHHHhC
Q 012418 156 VKVPLI-LGIWGGKGQGKSFQCELVFAKMGI---N----------------GNAGEPAKL-----IRQRYREAADIIKKG 210 (464)
Q Consensus 156 i~~p~G-LLL~GPPGtGKT~LAkaIA~elg~---~----------------~~~Ge~~k~-----Ir~~F~~A~~~~~~~ 210 (464)
...|.+ +||+||+|||||++|+++|+.+-- + ...|.+... ...+... ++..
T Consensus 535 ~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~----~~~~ 610 (821)
T CHL00095 535 PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEA----VRKK 610 (821)
T ss_pred CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHH----HHhC
Confidence 344554 789999999999999999998731 1 111221110 0112222 2455
Q ss_pred CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC
Q 012418 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 277 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~ 277 (464)
..+||||||+|+.. ..+...|+.++++-..+--.|. .....+.+||+|||-.
T Consensus 611 p~~VvllDeieka~-------------~~v~~~Llq~le~g~~~d~~g~--~v~~~~~i~I~Tsn~g 662 (821)
T CHL00095 611 PYTVVLFDEIEKAH-------------PDIFNLLLQILDDGRLTDSKGR--TIDFKNTLIIMTSNLG 662 (821)
T ss_pred CCeEEEECChhhCC-------------HHHHHHHHHHhccCceecCCCc--EEecCceEEEEeCCcc
Confidence 55899999999752 2345667788774332222222 1234678999999964
No 148
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=4.9e-08 Score=98.92 Aligned_cols=147 Identities=18% Similarity=0.205 Sum_probs=92.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-------------CCCCC--hHHHHHHHHHHHHHHHHhCCcEEEEecc
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------GNAGE--PAKLIRQRYREAADIIKKGKMCCLFIND 219 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------------~~~Ge--~~k~Ir~~F~~A~~~~~~~~P~ILfIDE 219 (464)
.-+.|..+||+||+|+|||++|+++|+.+... ..-|. ....||++-..+......+...|++|||
T Consensus 22 ~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ 101 (313)
T PRK05564 22 KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYN 101 (313)
T ss_pred cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEec
Confidence 34678899999999999999999999987432 11222 2235666665442222256678999999
Q ss_pred ccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--C
Q 012418 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 297 (464)
Q Consensus 220 IDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P 297 (464)
+|.+-. ...|. |+..+. +....+.+|.+|++++.|.|.++. |+- .+.+ |
T Consensus 102 ad~m~~------------~a~na-LLK~LE-------------epp~~t~~il~~~~~~~ll~TI~S--Rc~-~~~~~~~ 152 (313)
T PRK05564 102 SEKMTE------------QAQNA-FLKTIE-------------EPPKGVFIILLCENLEQILDTIKS--RCQ-IYKLNRL 152 (313)
T ss_pred hhhcCH------------HHHHH-HHHHhc-------------CCCCCeEEEEEeCChHhCcHHHHh--hce-eeeCCCc
Confidence 976521 12233 334444 444556788888999999999987 554 4554 7
Q ss_pred CHHHHHHHHHhhcCCCCCChhH---HHHHhcCCChhhH
Q 012418 298 TREDRIGVCSGIFRTDNVPKED---IVKLVDTFPGQSI 332 (464)
Q Consensus 298 ~~eeR~eIl~~~~~~~~v~~~~---la~lt~gfsgadL 332 (464)
+.++....+...+. .++.+. ++..+.|-++..+
T Consensus 153 ~~~~~~~~l~~~~~--~~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 153 SKEEIEKFISYKYN--DIKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred CHHHHHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHH
Confidence 78887777765543 344443 4444445444333
No 149
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.88 E-value=3.1e-09 Score=108.47 Aligned_cols=134 Identities=17% Similarity=0.242 Sum_probs=80.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC-------------CCCCChHHHHH----HHHHHHHHHH-HhCCcEEEEecccc
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN-------------GNAGEPAKLIR----QRYREAADII-KKGKMCCLFINDLD 221 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~-------------~~~Ge~~k~Ir----~~F~~A~~~~-~~~~P~ILfIDEID 221 (464)
..+||.||||||||++|+++|..++.+ ...|...-... ..|..--.-+ .... +|+|+|||+
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~-~ill~DEIn 122 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR-VILLLDEIN 122 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc-eEEEEeccc
Confidence 368999999999999999999999977 22333221111 0000000000 0111 599999998
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeC-----CCCCCchhhccCCcceEEEeC
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEKFYWA 296 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN-----~~~~LDpALlRpGRfD~~i~i 296 (464)
... ..++..|+..++. ..+.+++...-.-....+||+|+| ....|++|+++ ||...+++
T Consensus 123 ra~-------------p~~q~aLl~~l~e-~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 123 RAP-------------PEVQNALLEALEE-RQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred cCC-------------HHHHHHHHHHHhC-cEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 533 2344566666662 223344441112235667888889 88889999998 88766776
Q ss_pred --C-CHHHHHHHHHhhc
Q 012418 297 --P-TREDRIGVCSGIF 310 (464)
Q Consensus 297 --P-~~eeR~eIl~~~~ 310 (464)
| ..++...+.....
T Consensus 187 ~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 187 DYPDSEEEERIILARVG 203 (329)
T ss_pred CCCCchHHHHHHHHhCc
Confidence 6 5555555544443
No 150
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.88 E-value=8.3e-09 Score=101.89 Aligned_cols=131 Identities=9% Similarity=0.114 Sum_probs=74.5
Q ss_pred ccccccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCCC
Q 012418 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAGE 191 (464)
Q Consensus 118 ~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~Ge 191 (464)
...+..+|+|..-. ..- .+.++..++.|..... ....+++|+||||||||+|+.+||+++... ..+.+
T Consensus 64 ~~~~~~tFdnf~~~----~~~-q~~al~~a~~~~~~~~-~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 64 PLHQNCSFENYRVE----CEG-QMNALSKARQYVEEFD-GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred ccccCCccccccCC----Cch-HHHHHHHHHHHHHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 33445566765432 110 1224455566654211 113589999999999999999999998432 11122
Q ss_pred hHHHHHHHHHHH----HHHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCC
Q 012418 192 PAKLIRQRYREA----ADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266 (464)
Q Consensus 192 ~~k~Ir~~F~~A----~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~ 266 (464)
-...++..|..+ .+.++ -....+|+|||++..... .....+|++|++ . ....
T Consensus 138 l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s-----------~~~~~~l~~Ii~---------~---Ry~~ 194 (244)
T PRK07952 138 IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTES-----------RYEKVIINQIVD---------R---RSSS 194 (244)
T ss_pred HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCC-----------HHHHHHHHHHHH---------H---HHhC
Confidence 222233333211 01222 346789999999875321 122346666776 2 3445
Q ss_pred CceEEEEeCCC
Q 012418 267 RVPIIVTGNDF 277 (464)
Q Consensus 267 ~V~VIaTTN~~ 277 (464)
+.|+|+|||..
T Consensus 195 ~~~tiitSNl~ 205 (244)
T PRK07952 195 KRPTGMLTNSN 205 (244)
T ss_pred CCCEEEeCCCC
Confidence 67999999974
No 151
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=6.7e-09 Score=105.29 Aligned_cols=125 Identities=21% Similarity=0.351 Sum_probs=84.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC------------CCCCChHHHHHHHHHHHHHH-HHhCCcEEEEeccccccccC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN------------GNAGEPAKLIRQRYREAADI-IKKGKMCCLFINDLDAGAGR 226 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~Ge~~k~Ir~~F~~A~~~-~~~~~P~ILfIDEIDal~~~ 226 (464)
..|||.||.|||||+||+.+|+.|++| .|+||...+|-..+-.|++. ..+....||+|||||+++..
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 478999999999999999999999998 89999887765544444322 12556689999999999876
Q ss_pred CC-CCCccchhhHHHHHHHHhhhcCCCcccCC--Cc-------cccCCCCCceEEEEeCCCCCCchhhcc
Q 012418 227 MG-GTTQYTVNNQMVNATLMNIADNPTNVQLP--GM-------YNQEENPRVPIIVTGNDFSTLYAPLIR 286 (464)
Q Consensus 227 r~-~~~~~~~~~~~v~~~L~~llD~~~~v~ld--G~-------~~~~~~~~V~VIaTTN~~~~LDpALlR 286 (464)
.. .+-...++..-|+|.|+.++.. +.++++ |- +...+..++.+|| .--+.-|+.-+.+
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEG-TvasVPPqGGRKHP~Qe~iqvDT~NILFIc-gGAF~GlekiI~~ 245 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEG-TVASVPPQGGRKHPQQEFIQVDTSNILFIC-GGAFAGLEKIIKK 245 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcC-ceeccCCCCCCCCCccceEEEcccceeEEe-ccccccHHHHHHH
Confidence 53 1223457778899999999873 222332 21 1112233444443 3356667766655
No 152
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.1e-08 Score=102.00 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=71.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC-------------------------------CCCC--ChHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------------GNAG--EPAKLIRQRYREA 203 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------------------------------~~~G--e~~k~Ir~~F~~A 203 (464)
+.|..+||+||||||||++|.++|+++... ...+ .....|+++-+..
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~ 101 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFL 101 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHh
Confidence 566699999999999999999999998721 1111 1122233322222
Q ss_pred HHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchh
Q 012418 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283 (464)
Q Consensus 204 ~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpA 283 (464)
...-..+..-|++|||+|.+... ..++++ ..+. +...+.++|++||+++.|-++
T Consensus 102 ~~~~~~~~~kviiidead~mt~~------------A~nall-k~lE-------------ep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLTED------------AANALL-KTLE-------------EPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred ccCCCCCCceEEEeCcHHHHhHH------------HHHHHH-HHhc-------------cCCCCeEEEEEcCChhhccch
Confidence 00001256789999999987552 223333 3332 456678999999999999999
Q ss_pred hccCCcceEE
Q 012418 284 LIRDGRMEKF 293 (464)
Q Consensus 284 LlRpGRfD~~ 293 (464)
+.. |+-.+
T Consensus 156 I~S--Rc~~i 163 (325)
T COG0470 156 IRS--RCQRI 163 (325)
T ss_pred hhh--cceee
Confidence 887 55553
No 153
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=4.5e-08 Score=101.43 Aligned_cols=152 Identities=14% Similarity=0.079 Sum_probs=95.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-------------------------------CCCC----C--------
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------------GNAG----E-------- 191 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------------------------------~~~G----e-------- 191 (464)
.-+.|..+||+||+|+|||++|+.+|+.+... .++. +
T Consensus 41 ~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~ 120 (351)
T PRK09112 41 EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTA 120 (351)
T ss_pred cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeeccccccccccccc
Confidence 34678899999999999999999999998551 0010 0
Q ss_pred -hHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceE
Q 012418 192 -PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270 (464)
Q Consensus 192 -~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~V 270 (464)
+...||++-+........+...|++|||+|.+-. ...+. |+..+. +...++.+
T Consensus 121 I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~------------~aana-LLk~LE-------------Epp~~~~f 174 (351)
T PRK09112 121 ITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR------------NAANA-ILKTLE-------------EPPARALF 174 (351)
T ss_pred CCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH------------HHHHH-HHHHHh-------------cCCCCceE
Confidence 1223443333221111256678999999997622 12233 334444 33345677
Q ss_pred EEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCChh---HHHHHhcCCChhhHHHH
Q 012418 271 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKE---DIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 271 IaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~~~---~la~lt~gfsgadLd~~ 335 (464)
|+.|+.++.|.|.++. |+- .+.+ |+.++..+++...-...+++.+ .+.+++.|-+...+.++
T Consensus 175 iLit~~~~~llptIrS--Rc~-~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTIRS--RCQ-PISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHHHh--hcc-EEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7778889999888765 664 4554 7889988888764333234333 56666777666666543
No 154
>PRK06921 hypothetical protein; Provisional
Probab=98.83 E-value=2.1e-08 Score=100.07 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=74.6
Q ss_pred cccccccccccccCccCcchhhhhHHHHHHHHhhhhCC---CCCCCcEEEEEcCCCccHHHHHHHHHHHhCC----C-CC
Q 012418 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLP---NVKVPLILGIWGGKGQGKSFQCELVFAKMGI----N-GN 188 (464)
Q Consensus 117 ~~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~---gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~----~-~~ 188 (464)
+..+...+|+|...+.+ +..+ +.+...+++|+... .-....+++||||||||||+|+.|||+++.- . .|
T Consensus 75 ~~~~~~~~F~nf~~~~~--~~~~-~~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y 151 (266)
T PRK06921 75 TEAFRKLTFKNFKTEGK--PQAI-KDAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLY 151 (266)
T ss_pred CHHHHhhhhhcCccCCc--cHHH-HHHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEE
Confidence 44555667777664321 1222 22344555565411 1123578999999999999999999999743 2 12
Q ss_pred CCC--hHHHHHHHHHHHHHHHH-hCCcEEEEecccccc-ccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCC
Q 012418 189 AGE--PAKLIRQRYREAADIIK-KGKMCCLFINDLDAG-AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264 (464)
Q Consensus 189 ~Ge--~~k~Ir~~F~~A~~~~~-~~~P~ILfIDEIDal-~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~ 264 (464)
+.. ....++..|....+.+. .....+|+|||+..- .+... . +.-....|+++++ . ..
T Consensus 152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~----~---t~~~~~~lf~iin---------~---R~ 212 (266)
T PRK06921 152 FPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPR----A---TEWQIEQMYSVLN---------Y---RY 212 (266)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCcc----C---CHHHHHHHHHHHH---------H---HH
Confidence 211 11223333332222222 445789999999541 12211 0 1112234556665 2 22
Q ss_pred CCCceEEEEeCCC
Q 012418 265 NPRVPIIVTGNDF 277 (464)
Q Consensus 265 ~~~V~VIaTTN~~ 277 (464)
..+.++|+|||.+
T Consensus 213 ~~~k~tIitsn~~ 225 (266)
T PRK06921 213 LNHKPILISSELT 225 (266)
T ss_pred HCCCCEEEECCCC
Confidence 2345789999973
No 155
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.82 E-value=7.4e-08 Score=95.04 Aligned_cols=149 Identities=14% Similarity=0.154 Sum_probs=92.0
Q ss_pred HHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----CCCCChHHHHHHHHHHHHHHHH-hCCcEEEEe
Q 012418 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----GNAGEPAKLIRQRYREAADIIK-KGKMCCLFI 217 (464)
Q Consensus 144 ~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----~~~Ge~~k~Ir~~F~~A~~~~~-~~~P~ILfI 217 (464)
..+.+|-.....-.+..-+||||+.|||||++++++.++..-. ....+....+.+++... + ...+-|||+
T Consensus 37 ~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l----~~~~~kFIlf~ 112 (249)
T PF05673_consen 37 EALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLL----RDRPYKFILFC 112 (249)
T ss_pred HHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHH----hcCCCCEEEEe
Confidence 3444555443334467899999999999999999999987544 11111222233333332 4 556789999
Q ss_pred ccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhcc-C---------
Q 012418 218 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR-D--------- 287 (464)
Q Consensus 218 DEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlR-p--------- 287 (464)
||+- +...+. .- ..|..+++ |. ......+|.|.+|+|+-..+++-+.. .
T Consensus 113 DDLs-----Fe~~d~---~y----k~LKs~Le--------Gg-le~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~ 171 (249)
T PF05673_consen 113 DDLS-----FEEGDT---EY----KALKSVLE--------GG-LEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHP 171 (249)
T ss_pred cCCC-----CCCCcH---HH----HHHHHHhc--------Cc-cccCCCcEEEEEecchhhccchhhhhccCCCccccCc
Confidence 9974 221111 11 22444444 43 12345789999999998888776542 1
Q ss_pred -----------CcceEEEeC--CCHHHHHHHHHhhcCCCCCCh
Q 012418 288 -----------GRMEKFYWA--PTREDRIGVCSGIFRTDNVPK 317 (464)
Q Consensus 288 -----------GRfD~~i~i--P~~eeR~eIl~~~~~~~~v~~ 317 (464)
.||-..+.+ |+.++=++|++.+....+++.
T Consensus 172 ~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 172 SDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred chHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 256655554 788888888888776555443
No 156
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=6.7e-08 Score=99.87 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=97.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCCC--------------------------CC---------------------
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGING--------------------------NA--------------------- 189 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~--------------------------~~--------------------- 189 (464)
+.|.++||+||+|+||+.+|+.+|+.+.... ++
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 8999999999999999999999999986530 00
Q ss_pred ---C---------ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCC
Q 012418 190 ---G---------EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257 (464)
Q Consensus 190 ---G---------e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ld 257 (464)
| -....||++.+.+......+...|++||++|.+-. ...|++| ..++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~------------~AaNaLL-KtLE-------- 157 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV------------AAANALL-KTLE-------- 157 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH------------HHHHHHH-HHhc--------
Confidence 0 01234555544432111245566888888886522 2334444 4444
Q ss_pred CccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCC-hhHHHHHhcCCChhhHHH
Q 012418 258 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP-KEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 258 G~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~-~~~la~lt~gfsgadLd~ 334 (464)
+..+++.+|.+|++++.|.|.+++ |+-. +.+ |+.++..+.+... +++ .+.+..++.|-++..+++
T Consensus 158 -----EPp~~t~fiL~t~~~~~LLpTI~S--Rcq~-i~~~~~~~~~~~~~L~~~----~~~~~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 158 -----EPPPGTVFLLVSARIDRLLPTILS--RCRQ-FPMTVPAPEAAAAWLAAQ----GVADADALLAEAGGAPLAALAL 225 (342)
T ss_pred -----CCCcCcEEEEEECChhhCcHHHHh--cCEE-EEecCCCHHHHHHHHHHc----CCChHHHHHHHcCCCHHHHHHH
Confidence 556678999999999999999987 6644 443 7888888887654 122 335666777777766654
Q ss_pred H
Q 012418 335 F 335 (464)
Q Consensus 335 ~ 335 (464)
.
T Consensus 226 ~ 226 (342)
T PRK06964 226 A 226 (342)
T ss_pred H
Confidence 3
No 157
>PHA02244 ATPase-like protein
Probab=98.81 E-value=1.7e-08 Score=104.86 Aligned_cols=117 Identities=17% Similarity=0.229 Sum_probs=70.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC-----CC------CC---ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccc
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN-----GN------AG---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 224 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~-----~~------~G---e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~ 224 (464)
..-|||+||||||||++|+++|..++.+ .. .| .........|-+| .....+|+|||||...
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-----~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-----FKKGGLFFIDEIDASI 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-----hhcCCEEEEeCcCcCC
Confidence 3458999999999999999999999877 10 11 0000011122222 3456899999998653
Q ss_pred cCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC-----------CCCchhhccCCcceEE
Q 012418 225 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----------STLYAPLIRDGRMEKF 293 (464)
Q Consensus 225 ~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~-----------~~LDpALlRpGRfD~~ 293 (464)
.. +...|..++++- ..++.|... ....+..+|+|+|.+ ..|++|++. ||-.
T Consensus 194 p~-------------vq~~L~~lLd~r-~l~l~g~~i-~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv~- 255 (383)
T PHA02244 194 PE-------------ALIIINSAIANK-FFDFADERV-TAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFAP- 255 (383)
T ss_pred HH-------------HHHHHHHHhccC-eEEecCcEE-ecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcEE-
Confidence 22 222344444422 122222210 123577899999973 688999987 7864
Q ss_pred EeC--CC
Q 012418 294 YWA--PT 298 (464)
Q Consensus 294 i~i--P~ 298 (464)
+++ |+
T Consensus 256 I~~dyp~ 262 (383)
T PHA02244 256 IEFDYDE 262 (383)
T ss_pred eeCCCCc
Confidence 554 65
No 158
>PRK06526 transposase; Provisional
Probab=98.81 E-value=2.9e-08 Score=98.52 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=58.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh---CCCCCCCChHHHHHHHHHH-----HHHHHH-hCCcEEEEeccccccccC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINGNAGEPAKLIRQRYRE-----AADIIK-KGKMCCLFINDLDAGAGR 226 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el---g~~~~~Ge~~k~Ir~~F~~-----A~~~~~-~~~P~ILfIDEIDal~~~ 226 (464)
++.+.+|+|+||||||||+||.+|+.++ |...........+.++-.. ....++ -..+.+|+|||++.....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~ 174 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFE 174 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCC
Confidence 3456789999999999999999999986 3332223333333322110 011222 355789999999865432
Q ss_pred CCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC
Q 012418 227 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 277 (464)
Q Consensus 227 r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~ 277 (464)
. .....|+++++ ....+..+|+|||.+
T Consensus 175 ~-----------~~~~~L~~li~-------------~r~~~~s~IitSn~~ 201 (254)
T PRK06526 175 P-----------EAANLFFQLVS-------------SRYERASLIVTSNKP 201 (254)
T ss_pred H-----------HHHHHHHHHHH-------------HHHhcCCEEEEcCCC
Confidence 1 12245666665 111123699999986
No 159
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.80 E-value=1.4e-08 Score=104.43 Aligned_cols=136 Identities=17% Similarity=0.176 Sum_probs=75.9
Q ss_pred cccccccccccccCccCc---------chhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-
Q 012418 117 SQGLRQYSLDNTLDGLYI---------APAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN- 186 (464)
Q Consensus 117 ~~~~r~~~f~n~~~~~~i---------~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~- 186 (464)
+..++..+|+|...++|- .+.-.-..+...+++|.....- ...+|+||||||||||+||.|||+++--.
T Consensus 133 ~~~~~~~~F~nf~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~f~~~f~~-~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 133 KEILKEENFSNFNLNYYSDEKDDDEPLSPRKNMEKILEKCKNFIENFDK-NNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred chHHHhCChhhCCccccCccccccCCCCHHHHHHHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 345556677777665551 2222222344556666652211 22789999999999999999999997322
Q ss_pred ---CCCCChHHHHHHH----HHH---HHHHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCccc
Q 012418 187 ---GNAGEPAKLIRQR----YRE---AADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 255 (464)
Q Consensus 187 ---~~~Ge~~k~Ir~~----F~~---A~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ 255 (464)
.++. ...++..+ |.. ....+. -....+|+|||+...... ......|+++++
T Consensus 212 ~~V~y~t-~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t-----------~~~~~~Lf~iin------ 273 (329)
T PRK06835 212 KSVIYRT-ADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKIT-----------EFSKSELFNLIN------ 273 (329)
T ss_pred CeEEEEE-HHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCC-----------HHHHHHHHHHHH------
Confidence 1111 12222211 111 000012 345679999999765322 122344666666
Q ss_pred CCCccccCCCCCceEEEEeCCC
Q 012418 256 LPGMYNQEENPRVPIIVTGNDF 277 (464)
Q Consensus 256 ldG~~~~~~~~~V~VIaTTN~~ 277 (464)
. ....+.++|+|||..
T Consensus 274 ---~---R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 274 ---K---RLLRQKKMIISTNLS 289 (329)
T ss_pred ---H---HHHCCCCEEEECCCC
Confidence 2 233456899999974
No 160
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.80 E-value=7.3e-08 Score=106.62 Aligned_cols=156 Identities=16% Similarity=0.248 Sum_probs=83.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCC----------C--CCCCC----hHHHH-HHH--------HHHHHH-------
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGI----------N--GNAGE----PAKLI-RQR--------YREAAD------- 205 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~----------~--~~~Ge----~~k~I-r~~--------F~~A~~------- 205 (464)
.|..++|+||||||||++|+++++.... + ..-|. ....+ ..+ +..+..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl 253 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGV 253 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCC
Confidence 3567999999999999999999877631 1 00010 01111 011 111111
Q ss_pred ------HHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCcccc---------------CC
Q 012418 206 ------IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ---------------EE 264 (464)
Q Consensus 206 ------~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~---------------~~ 264 (464)
.+......+|||||++.+-.. ....|+.++.+....-..+.|.. ..
T Consensus 254 ~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~ 320 (615)
T TIGR02903 254 PEPKTGLVTDAHGGVLFIDEIGELDPL-------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGA 320 (615)
T ss_pred CchhcCchhhcCCCeEEEeccccCCHH-------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCc
Confidence 111234569999999865322 22335555542211001111110 11
Q ss_pred CCCceEE-EEeCCCCCCchhhccCCcceEEEeC-CCHHHHHHHHHhhcCCCCCCh-hHHHHHhcCCC
Q 012418 265 NPRVPII-VTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCSGIFRTDNVPK-EDIVKLVDTFP 328 (464)
Q Consensus 265 ~~~V~VI-aTTN~~~~LDpALlRpGRfD~~i~i-P~~eeR~eIl~~~~~~~~v~~-~~la~lt~gfs 328 (464)
...+++| +|||+++.++++|++ ||..+... ++.+++.+|++......++.. +++.++...|+
T Consensus 321 ~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys 385 (615)
T TIGR02903 321 PADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYT 385 (615)
T ss_pred cceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCC
Confidence 1233444 467789999999876 88865444 688999999888766544322 23444444444
No 161
>PRK09087 hypothetical protein; Validated
Probab=98.78 E-value=2.5e-08 Score=97.13 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=88.3
Q ss_pred ccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCCCCChHHHHHHHHH
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYR 201 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~~Ge~~k~Ir~~F~ 201 (464)
.|+|+|.+.+ +. +..+...++++. +. ...-+.||||+|||||+|++++|+..+.. |+... ....+.+.
T Consensus 17 ~~~~~~Fi~~----~~--N~~a~~~l~~~~---~~-~~~~l~l~G~~GsGKThLl~~~~~~~~~~-~i~~~-~~~~~~~~ 84 (226)
T PRK09087 17 AYGRDDLLVT----ES--NRAAVSLVDHWP---NW-PSPVVVLAGPVGSGKTHLASIWREKSDAL-LIHPN-EIGSDAAN 84 (226)
T ss_pred CCChhceeec----Cc--hHHHHHHHHhcc---cC-CCCeEEEECCCCCCHHHHHHHHHHhcCCE-EecHH-HcchHHHH
Confidence 4567776642 11 122444444433 22 23458999999999999999999987654 22211 11111222
Q ss_pred HHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC-CCC-
Q 012418 202 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FST- 279 (464)
Q Consensus 202 ~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~-~~~- 279 (464)
.. . ..+|+|||+|.+.. .+ . .|+.+++ . ....+..+|+|++. |..
T Consensus 85 ~~----~---~~~l~iDDi~~~~~-----~~-----~----~lf~l~n---------~---~~~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 85 AA----A---EGPVLIEDIDAGGF-----DE-----T----GLFHLIN---------S---VRQAGTSLLMTSRLWPSSW 131 (226)
T ss_pred hh----h---cCeEEEECCCCCCC-----CH-----H----HHHHHHH---------H---HHhCCCeEEEECCCChHHh
Confidence 11 1 25899999996521 11 1 1333333 1 11223456666663 332
Q ss_pred --CchhhccCCcce--EEEeC--CCHHHHHHHHHhhcCCCC--CChhHHHHHhcCCC
Q 012418 280 --LYAPLIRDGRME--KFYWA--PTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFP 328 (464)
Q Consensus 280 --LDpALlRpGRfD--~~i~i--P~~eeR~eIl~~~~~~~~--v~~~~la~lt~gfs 328 (464)
+.+.|+. ||. ..+.+ |+.++|.+|++.++...+ ++.+.+.-++..++
T Consensus 132 ~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 132 NVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME 186 (226)
T ss_pred ccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 3566765 564 45555 999999999988876554 44444444444443
No 162
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=6.8e-08 Score=106.81 Aligned_cols=173 Identities=13% Similarity=0.168 Sum_probs=105.1
Q ss_pred hhcccccccccccccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC-
Q 012418 109 VMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING- 187 (464)
Q Consensus 109 i~~~~~~~~~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~- 187 (464)
+++...|++. +|++++|. ..+...+++.+.. -+.|..+|||||+|+|||++|+++|+.+.+..
T Consensus 5 ~~~~~kyRP~-----~f~~viGq---------~~~~~~L~~~i~~--~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~ 68 (614)
T PRK14971 5 IVSARKYRPS-----TFESVVGQ---------EALTTTLKNAIAT--NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNL 68 (614)
T ss_pred HHHHHHHCCC-----CHHHhcCc---------HHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 3444455553 45777776 2233344444442 36788999999999999999999999986420
Q ss_pred --------------------------CCC---ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhH
Q 012418 188 --------------------------NAG---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 238 (464)
Q Consensus 188 --------------------------~~G---e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~ 238 (464)
.-+ .....|+++...+...--.+...|+||||+|.+.. .
T Consensus 69 ~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~------------~ 136 (614)
T PRK14971 69 TADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ------------A 136 (614)
T ss_pred CCCCCCCCcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH------------H
Confidence 001 11344666555441111134567999999987622 1
Q ss_pred HHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCC
Q 012418 239 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 316 (464)
Q Consensus 239 ~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~ 316 (464)
..+ .|+..++ +....+.+|++|+....|.++|+. |+.. +.+ ++.++....+..++...++.
T Consensus 137 a~n-aLLK~LE-------------epp~~tifIL~tt~~~kIl~tI~S--Rc~i-v~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 137 AFN-AFLKTLE-------------EPPSYAIFILATTEKHKILPTILS--RCQI-FDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred HHH-HHHHHHh-------------CCCCCeEEEEEeCCchhchHHHHh--hhhe-eecCCCCHHHHHHHHHHHHHHcCCC
Confidence 122 3445554 333345677777777899999987 5544 443 77888888877776666654
Q ss_pred hh-----HHHHHhcC
Q 012418 317 KE-----DIVKLVDT 326 (464)
Q Consensus 317 ~~-----~la~lt~g 326 (464)
.+ .|+..+.|
T Consensus 200 i~~~al~~La~~s~g 214 (614)
T PRK14971 200 AEPEALNVIAQKADG 214 (614)
T ss_pred CCHHHHHHHHHHcCC
Confidence 33 34444444
No 163
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.78 E-value=2.7e-08 Score=101.33 Aligned_cols=135 Identities=17% Similarity=0.161 Sum_probs=72.9
Q ss_pred ccccccccccccccCccCcchhhhhHHHHHHHHhhhhC-CCCCCCcEEEEEcCCCccHHHHHHHHHHHhC---CC-C--C
Q 012418 116 ISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNL-PNVKVPLILGIWGGKGQGKSFQCELVFAKMG---IN-G--N 188 (464)
Q Consensus 116 ~~~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~-~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg---~~-~--~ 188 (464)
++..+...+|+++..... . ...+...+..|+.. ...+..+||+||||||||||+|+.|||+++- .+ . +
T Consensus 117 ~p~~~~~atf~~~~~~~~--~---~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 117 MPKDLLQASLADIDLDDR--D---RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCHhHhcCcHHHhcCCCh--H---HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 344444566776654321 0 11123334455542 1123468999999999999999999999984 33 1 1
Q ss_pred CCChHHHHHHHHHHH--HHHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCC
Q 012418 189 AGEPAKLIRQRYREA--ADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265 (464)
Q Consensus 189 ~Ge~~k~Ir~~F~~A--~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~ 265 (464)
+.+....++..+..- .+.++ -.+..||+||||.+.... .-....+|..|++ . +..
T Consensus 192 ~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s----------~~~~~~ll~~Il~---------~---R~~ 249 (306)
T PRK08939 192 FPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMS----------SWVRDEVLGVILQ---------Y---RMQ 249 (306)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcccc----------HHHHHHHHHHHHH---------H---HHH
Confidence 111222233332210 12222 456789999999653211 0111123433444 1 223
Q ss_pred CCceEEEEeCCC
Q 012418 266 PRVPIIVTGNDF 277 (464)
Q Consensus 266 ~~V~VIaTTN~~ 277 (464)
.+.|+|+|||-+
T Consensus 250 ~~~~ti~TSNl~ 261 (306)
T PRK08939 250 EELPTFFTSNFD 261 (306)
T ss_pred CCCeEEEECCCC
Confidence 567999999974
No 164
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.4e-08 Score=103.45 Aligned_cols=132 Identities=18% Similarity=0.319 Sum_probs=90.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC------------CCCCChHH-HHHHHHHHHHHHHHhCCcEEEEeccccccccC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN------------GNAGEPAK-LIRQRYREAADIIKKGKMCCLFINDLDAGAGR 226 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~Ge~~k-~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~ 226 (464)
..|||.||.|+|||+||+.+|+-+++| .|+||... .|..++..|---..+.+-.|+||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 368999999999999999999999998 89998654 45566666632233666789999999999744
Q ss_pred CCCC-CccchhhHHHHHHHHhhhcCCCcccCCC--cccc-------CCCCCceEEEEeCCCCCCchhhccCCcceEEEe
Q 012418 227 MGGT-TQYTVNNQMVNATLMNIADNPTNVQLPG--MYNQ-------EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 295 (464)
Q Consensus 227 r~~~-~~~~~~~~~v~~~L~~llD~~~~v~ldG--~~~~-------~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~ 295 (464)
..+. ....+...-|+|.|+.|+. -+.|.++. .... .+..+| +++++--+..||.-+-| |++....
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtnI-LFiasGAF~~Ldk~I~r--R~~d~sl 381 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTNI-LFIASGAFVGLDKIISR--RLDDKSL 381 (564)
T ss_pred CccccccccccchhHHHHHHHHhc-ccEEcccCCCCCCCCCCCeEEEeccce-EEEecccccchHHHHHH--hhcchhc
Confidence 3322 2236777889999999887 34455532 2100 111223 34445567788888888 7766544
No 165
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.75 E-value=8.6e-07 Score=86.73 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=78.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC---------------------------CCCCCh-HHHHHHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN---------------------------GNAGEP-AKLIRQRYREAADIIKKG 210 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~---------------------------~~~Ge~-~k~Ir~~F~~A~~~~~~~ 210 (464)
+..++|+||+|+|||++++.+++++... ...+.. ...++.+..........+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 3468899999999999999999987521 001111 112222333232334467
Q ss_pred CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC---CCc----hh
Q 012418 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLY----AP 283 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~---~LD----pA 283 (464)
++.+|+|||++.+... . ...|..+.+ .+. .....+.||+|+. ++ .+. .+
T Consensus 123 ~~~vliiDe~~~l~~~------------~-~~~l~~l~~----~~~------~~~~~~~vvl~g~-~~~~~~l~~~~~~~ 178 (269)
T TIGR03015 123 KRALLVVDEAQNLTPE------------L-LEELRMLSN----FQT------DNAKLLQIFLVGQ-PEFRETLQSPQLQQ 178 (269)
T ss_pred CCeEEEEECcccCCHH------------H-HHHHHHHhC----ccc------CCCCeEEEEEcCC-HHHHHHHcCchhHH
Confidence 8899999999875321 0 112222222 000 1123344555543 22 111 12
Q ss_pred hccCCcceEEEeC--CCHHHHHHHHHhhcCC------CCCChh---HHHHHhcCCChh
Q 012418 284 LIRDGRMEKFYWA--PTREDRIGVCSGIFRT------DNVPKE---DIVKLVDTFPGQ 330 (464)
Q Consensus 284 LlRpGRfD~~i~i--P~~eeR~eIl~~~~~~------~~v~~~---~la~lt~gfsga 330 (464)
+.+ |+...+.+ .+.++..+++...+.. ..++.+ .|.+.+.|.+..
T Consensus 179 l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~ 234 (269)
T TIGR03015 179 LRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL 234 (269)
T ss_pred HHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH
Confidence 333 56666665 5778877776655431 234444 567777777754
No 166
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.5e-07 Score=96.10 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=100.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCCC--------------------------CCCCh------------------
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGING--------------------------NAGEP------------------ 192 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~--------------------------~~Ge~------------------ 192 (464)
+.|..+||+||+|+||+.+|.++|+.+-... .-|+.
T Consensus 24 rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (314)
T PRK07399 24 RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQ 103 (314)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhcccccccccc
Confidence 6688999999999999999999999974320 01221
Q ss_pred --HHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceE
Q 012418 193 --AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270 (464)
Q Consensus 193 --~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~V 270 (464)
...||++-+.+....-.+...|++||++|.+.. ...| .|+..+. +.. +..+
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------~aaN-aLLK~LE-------------EPp-~~~f 156 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------AAAN-ALLKTLE-------------EPG-NGTL 156 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------HHHH-HHHHHHh-------------CCC-CCeE
Confidence 124555544442111256678999999986622 1223 3445555 222 4467
Q ss_pred EEEeCCCCCCchhhccCCcceEEEe-CCCHHHHHHHHHhhcCCCCCCh--hHHHHHhcCCChhhHHHH
Q 012418 271 IVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPK--EDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 271 IaTTN~~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~v~~--~~la~lt~gfsgadLd~~ 335 (464)
|.+|++++.|.|.++. |+-.+-. .|+.++..+++......+..+. +.++.++.|=++..++.+
T Consensus 157 ILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 157 ILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHHHH
Confidence 8888899999999987 6655333 2788888888887655444443 678888888888777654
No 167
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.74 E-value=3.8e-08 Score=106.18 Aligned_cols=164 Identities=17% Similarity=0.241 Sum_probs=111.7
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------- 187 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------- 187 (464)
+|++++|. ..+...++|-+.. -+...+.||.||-|||||++||.+|+.+++..
T Consensus 14 ~F~evvGQ---------e~v~~~L~nal~~--~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 14 TFDDVVGQ---------EHVVKTLSNALEN--GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred cHHHhccc---------HHHHHHHHHHHHh--CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 56788886 4455555665553 35677999999999999999999999987650
Q ss_pred CCC-------------ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc
Q 012418 188 NAG-------------EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 254 (464)
Q Consensus 188 ~~G-------------e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v 254 (464)
..| .....||++-+.+.-.--.++.-|.+|||+..+-. +..|++|-.+-
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~------------~afNALLKTLE------ 144 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK------------QAFNALLKTLE------ 144 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH------------HHHHHHhcccc------
Confidence 011 13345666666651111267788999999975522 34555563322
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe-CCCHHHHHHHHHhhcCCCCCChh-----HHHHHhcC
Q 012418 255 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKE-----DIVKLVDT 326 (464)
Q Consensus 255 ~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~v~~~-----~la~lt~g 326 (464)
+.-..|.+|.+|-.+..||+-++. |+-++-. .-+.++....+..++..+++..+ -|++..+|
T Consensus 145 --------EPP~hV~FIlATTe~~Kip~TIlS--Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 145 --------EPPSHVKFILATTEPQKIPNTILS--RCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred --------cCccCeEEEEecCCcCcCchhhhh--ccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 445667899999999999999987 6655444 25666777778888888877744 45555555
No 168
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.4e-07 Score=95.48 Aligned_cols=144 Identities=22% Similarity=0.307 Sum_probs=91.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC-------------------------------CCCCChHHHHHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------------GNAGEPAKLIRQRYREAADII 207 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~-------------------------------~~~Ge~~k~Ir~~F~~A~~~~ 207 (464)
|..+++|||||||||..++-++.++.-. ...|.+. .+.|....+.+
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~---~~~~~~l~~~~ 118 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSS---LEILKRLYDNL 118 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCch---HHHHHHHHHHH
Confidence 3349999999999999999999997432 1122221 23334444444
Q ss_pred H-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC---CCCchh
Q 012418 208 K-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF---STLYAP 283 (464)
Q Consensus 208 ~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~---~~LDpA 283 (464)
. .....||++||+|.+..+.+ ..|++|+.- .+ ....+|.+|+.+|+. +.|||-
T Consensus 119 ~~~~~~~IvvLDEid~L~~~~~-------------~~LY~L~r~------~~----~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 119 SKKGKTVIVILDEVDALVDKDG-------------EVLYSLLRA------PG----ENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred HhcCCeEEEEEcchhhhccccc-------------hHHHHHHhh------cc----ccceeEEEEEEeccHHHHHHhhhh
Confidence 4 57788999999999987643 346666541 11 225778999999997 477787
Q ss_pred hccCCcceEEEeC--CCHHHHHHHHHhh----cCCCCCChh---HHHHHhcCCCh
Q 012418 284 LIRDGRMEKFYWA--PTREDRIGVCSGI----FRTDNVPKE---DIVKLVDTFPG 329 (464)
Q Consensus 284 LlRpGRfD~~i~i--P~~eeR~eIl~~~----~~~~~v~~~---~la~lt~gfsg 329 (464)
+...-.... |.+ -+.+|...|++.- +.+..++.+ .++..+...+|
T Consensus 176 v~s~l~~~~-I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 176 VKSSLGPSE-IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred hhhccCcce-eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 765433333 444 5889999996543 444444443 34444444444
No 169
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.72 E-value=2.8e-07 Score=102.09 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=30.7
Q ss_pred HHhhhhC--CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 147 TKNFLNL--PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 147 ~Kn~l~~--~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
++.++.. .+..+.+.++|+||||||||++++++|++++..
T Consensus 96 l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 96 VETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQ 137 (637)
T ss_pred HHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence 4444442 234455679999999999999999999998864
No 170
>PRK08181 transposase; Validated
Probab=98.71 E-value=3.6e-08 Score=98.70 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=58.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC---CCCCCCChHHHHHHHHHHHH------HHHH-hCCcEEEEeccccccccCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG---INGNAGEPAKLIRQRYREAA------DIIK-KGKMCCLFINDLDAGAGRM 227 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg---~~~~~Ge~~k~Ir~~F~~A~------~~~~-~~~P~ILfIDEIDal~~~r 227 (464)
...+++|+||||||||+||.+|++++- .....-....++.++ ..+. +.++ -.++.+|+|||++......
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l-~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~ 183 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL-QVARRELQLESAIAKLDKFDLLILDDLAYVTKDQ 183 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH-HHHHhCCcHHHHHHHHhcCCEEEEeccccccCCH
Confidence 346899999999999999999998763 221112223333322 1111 1122 3567899999998654321
Q ss_pred CCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC
Q 012418 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 277 (464)
Q Consensus 228 ~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~ 277 (464)
.....|+++++ . ... +-++|+|||.+
T Consensus 184 -----------~~~~~Lf~lin---------~---R~~-~~s~IiTSN~~ 209 (269)
T PRK08181 184 -----------AETSVLFELIS---------A---RYE-RRSILITANQP 209 (269)
T ss_pred -----------HHHHHHHHHHH---------H---HHh-CCCEEEEcCCC
Confidence 12345667766 1 111 24799999985
No 171
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=1.6e-07 Score=96.17 Aligned_cols=149 Identities=16% Similarity=0.183 Sum_probs=99.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----------------------CCC-------CC------hHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------------GNA-------GE------PAKLIRQR 199 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------------~~~-------Ge------~~k~Ir~~ 199 (464)
.-+.|.++||+||+|+||+.+|.++|+.+... .++ |. ....||++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 44788999999999999999999999987543 011 11 13345555
Q ss_pred HHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCC
Q 012418 200 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 279 (464)
Q Consensus 200 F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~ 279 (464)
-+.+......+.-.|++||++|.+-. ...|++| ..++ +...++.+|.+|+.++.
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~ae~m~~------------~AaNaLL-KtLE-------------EPp~~~~fiL~~~~~~~ 155 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAINR------------AACNALL-KTLE-------------EPSPGRYLWLISAQPAR 155 (319)
T ss_pred HHHHhhCcccCCcEEEEeccHhhhCH------------HHHHHHH-HHhh-------------CCCCCCeEEEEECChhh
Confidence 44442111244567999999997622 2233434 4444 45567789999999999
Q ss_pred CchhhccCCcceEEEeC-CCHHHHHHHHHhhcCCCCCChh---HHHHHhcCCChhhHHHH
Q 012418 280 LYAPLIRDGRMEKFYWA-PTREDRIGVCSGIFRTDNVPKE---DIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 280 LDpALlRpGRfD~~i~i-P~~eeR~eIl~~~~~~~~v~~~---~la~lt~gfsgadLd~~ 335 (464)
|.|.++. |+-.+-.. |+.++..+.+... +++.+ .++.++.|-++..+++.
T Consensus 156 lLpTIrS--RCq~i~~~~~~~~~~~~~L~~~----~~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 156 LPATIRS--RCQRLEFKLPPAHEALAWLLAQ----GVSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CchHHHh--hheEeeCCCcCHHHHHHHHHHc----CCChHHHHHHHHHcCCCHHHHHHHh
Confidence 9999987 66664443 7888777776542 44444 66778888888777654
No 172
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.69 E-value=1.6e-07 Score=98.84 Aligned_cols=180 Identities=21% Similarity=0.216 Sum_probs=106.7
Q ss_pred ccccccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----CCCCChH
Q 012418 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----GNAGEPA 193 (464)
Q Consensus 118 ~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----~~~Ge~~ 193 (464)
.....|+|+|.+.+ +. .+.+..+++++-..+|- .-.=|+||||.|.|||+|.+|++++.... .++....
T Consensus 79 ~l~~~ytFdnFv~g----~~--N~~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 79 GLNPKYTFDNFVVG----PS--NRLAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred cCCCCCchhheeeC----Cc--hHHHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 34457899998765 11 24456677777776665 33458899999999999999999997543 2333322
Q ss_pred HHHHHHHHHH-----HHHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCC
Q 012418 194 KLIRQRYREA-----ADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267 (464)
Q Consensus 194 k~Ir~~F~~A-----~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~ 267 (464)
.....-|-.| .+..| ..+-.+|+||||+.+.++.. .+ ...-.++..+.+ .++
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~--~q-----eefFh~FN~l~~---------------~~k 209 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKER--TQ-----EEFFHTFNALLE---------------NGK 209 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChh--HH-----HHHHHHHHHHHh---------------cCC
Confidence 2211111111 11112 22556999999999887743 12 334444433333 112
Q ss_pred ceEEEEeC-CCCCC---chhhccCCcceEEE--eC--CCHHHHHHHHHhhcCCCCCC--hhHHHHHhcCCCh
Q 012418 268 VPIIVTGN-DFSTL---YAPLIRDGRMEKFY--WA--PTREDRIGVCSGIFRTDNVP--KEDIVKLVDTFPG 329 (464)
Q Consensus 268 V~VIaTTN-~~~~L---DpALlRpGRfD~~i--~i--P~~eeR~eIl~~~~~~~~v~--~~~la~lt~gfsg 329 (464)
-||+|+. -|..| .|.|.. ||..-+ .+ |+.+.|.+|+.......++. .+.+.-++..++.
T Consensus 210 -qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~ 278 (408)
T COG0593 210 -QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR 278 (408)
T ss_pred -EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Confidence 4566654 34444 477776 666543 34 99999999998866655444 4444444444443
No 173
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.69 E-value=6.9e-08 Score=99.46 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=54.8
Q ss_pred cEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCC-cccCCCccccCCCCCceEEEEeCCCC-CCchhhccCCc
Q 012418 212 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS-TLYAPLIRDGR 289 (464)
Q Consensus 212 P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~-~v~ldG~~~~~~~~~V~VIaTTN~~~-~LDpALlRpGR 289 (464)
..+||||||+.+-. .+.+.|.+.++..+ .++.+|.. .....++.+|+|+|..+ .|+++|+. |
T Consensus 129 ~GiL~lDEInrl~~-------------~~q~~Lle~mee~~v~v~r~G~~-~~~p~rfiviAt~NP~e~~l~~aLld--R 192 (334)
T PRK13407 129 RGYLYIDEVNLLED-------------HIVDLLLDVAQSGENVVEREGLS-IRHPARFVLVGSGNPEEGELRPQLLD--R 192 (334)
T ss_pred CCeEEecChHhCCH-------------HHHHHHHHHHHcCCeEEEECCeE-EecCCCEEEEecCCcccCCCCHHHHh--h
Confidence 35899999986532 23345556665322 23445641 12335678888888644 68999997 8
Q ss_pred ceEEEeC--C-CHHHHHHHHHhhc
Q 012418 290 MEKFYWA--P-TREDRIGVCSGIF 310 (464)
Q Consensus 290 fD~~i~i--P-~~eeR~eIl~~~~ 310 (464)
|...+.+ | +.++|.+|+....
T Consensus 193 F~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 193 FGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred cceEEEcCCCCcHHHHHHHHHHhh
Confidence 9988886 4 4489999987643
No 174
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.7e-07 Score=96.30 Aligned_cols=153 Identities=10% Similarity=0.095 Sum_probs=100.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------------------------CCCCC--hHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------GNAGE--PAKLIRQRYREA 203 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------------------------~~~Ge--~~k~Ir~~F~~A 203 (464)
.-+.|.++||+||+|+||+.+|+++|+.+... ...|. ....||++-+.+
T Consensus 20 ~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~ 99 (325)
T PRK06871 20 QGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKV 99 (325)
T ss_pred cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHH
Confidence 34678899999999999999999999997542 11122 345677665555
Q ss_pred HHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchh
Q 012418 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283 (464)
Q Consensus 204 ~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpA 283 (464)
......+...|++||++|.+-.. ..|++| ..+. +...++.+|.+|+.++.|.|.
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~~------------AaNaLL-KtLE-------------EPp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTEA------------AANALL-KTLE-------------EPRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred hhccccCCceEEEEechhhhCHH------------HHHHHH-HHhc-------------CCCCCeEEEEEECChHhCchH
Confidence 33333566789999999976322 223334 4444 556677899999999999999
Q ss_pred hccCCcceEEEeC-CCHHHHHHHHHhhcCCCCCChhHHHHHhcCCChhhHHHH
Q 012418 284 LIRDGRMEKFYWA-PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 284 LlRpGRfD~~i~i-P~~eeR~eIl~~~~~~~~v~~~~la~lt~gfsgadLd~~ 335 (464)
++. |+-.+... |+.++..+.+......+.-....++.++.|-++..+++.
T Consensus 154 I~S--RC~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~~g~p~~A~~~~ 204 (325)
T PRK06871 154 IYS--RCQTWLIHPPEEQQALDWLQAQSSAEISEILTALRINYGRPLLALTFL 204 (325)
T ss_pred HHh--hceEEeCCCCCHHHHHHHHHHHhccChHHHHHHHHHcCCCHHHHHHHh
Confidence 887 66664433 677777777665432222122345556677666666543
No 175
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=4.9e-07 Score=92.75 Aligned_cols=126 Identities=14% Similarity=0.122 Sum_probs=81.2
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----------------------------CCCCC--hHHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------------------GNAGE--PAKLIRQRYREAA 204 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------------------~~~Ge--~~k~Ir~~F~~A~ 204 (464)
.-+.|..+|||||+|+|||++|+++|+.+... ...|. ....||++-..+.
T Consensus 24 ~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~ 103 (329)
T PRK08058 24 KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFS 103 (329)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHh
Confidence 34678999999999999999999999997532 01121 1234555544431
Q ss_pred HHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhh
Q 012418 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 284 (464)
Q Consensus 205 ~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpAL 284 (464)
..--.+...|++|||+|.+-. ...| .|+..++ +....+.+|.+|+.++.|.|.+
T Consensus 104 ~~~~~~~~kvviI~~a~~~~~------------~a~N-aLLK~LE-------------EPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 104 KSGVESNKKVYIIEHADKMTA------------SAAN-SLLKFLE-------------EPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred hCCcccCceEEEeehHhhhCH------------HHHH-HHHHHhc-------------CCCCCceEEEEeCChHhCcHHH
Confidence 111134567999999976522 1223 3444444 4445567888998999999998
Q ss_pred ccCCcceEEEeC-CCHHHHHHHHHh
Q 012418 285 IRDGRMEKFYWA-PTREDRIGVCSG 308 (464)
Q Consensus 285 lRpGRfD~~i~i-P~~eeR~eIl~~ 308 (464)
+. |+-.+..- |+.++..++++.
T Consensus 158 rS--Rc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 158 LS--RCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred Hh--hceeeeCCCCCHHHHHHHHHH
Confidence 87 55543332 777777666653
No 176
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.65 E-value=2.7e-07 Score=95.69 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=55.0
Q ss_pred CCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCC-cccCCCccccCCCCCceEEEEeCCCC-CCchhhccC
Q 012418 210 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS-TLYAPLIRD 287 (464)
Q Consensus 210 ~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~-~v~ldG~~~~~~~~~V~VIaTTN~~~-~LDpALlRp 287 (464)
....+||||||+.+-.. ++..|++.++.-+ .++-+|.. .....++++|+|.|-.+ .|+++|+.
T Consensus 143 A~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ier~G~s-~~~p~rfiviaT~np~eg~l~~~Lld- 207 (350)
T CHL00081 143 ANRGILYVDEVNLLDDH-------------LVDILLDSAASGWNTVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD- 207 (350)
T ss_pred cCCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEeeCCee-eecCCCEEEEeccCcccCCCCHHHHH-
Confidence 34579999999865432 2334555554221 12224542 12335677788888655 69999997
Q ss_pred CcceEEEeC--CC-HHHHHHHHHhhc
Q 012418 288 GRMEKFYWA--PT-REDRIGVCSGIF 310 (464)
Q Consensus 288 GRfD~~i~i--P~-~eeR~eIl~~~~ 310 (464)
||...+.+ |. .+.+.+|++...
T Consensus 208 -Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 208 -RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred -HhCceeecCCCCChHHHHHHHHhhh
Confidence 89988886 65 699999987753
No 177
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.62 E-value=2.9e-08 Score=107.43 Aligned_cols=134 Identities=15% Similarity=0.187 Sum_probs=82.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCCCC--------CCChHHHHHHHHHHH----HHHHHhCCcEEEEeccccccccCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGINGN--------AGEPAKLIRQRYREA----ADIIKKGKMCCLFINDLDAGAGRMG 228 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~~~--------~Ge~~k~Ir~~F~~A----~~~~~~~~P~ILfIDEIDal~~~r~ 228 (464)
-|||+|+||||||.+|+++++.+....+ .|-+...+++.+... ...+......+|+|||+|.+-..
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~-- 315 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDS-- 315 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCHH--
Confidence 5999999999999999999997653211 111111111111000 00111334569999999976432
Q ss_pred CCCccchhhHHHHHHHHhhhcCCCc-ccCCCccccCCCCCceEEEEeCCCC-------------CCchhhccCCcceEEE
Q 012418 229 GTTQYTVNNQMVNATLMNIADNPTN-VQLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRDGRMEKFY 294 (464)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~llD~~~~-v~ldG~~~~~~~~~V~VIaTTN~~~-------------~LDpALlRpGRfD~~i 294 (464)
....|.+.++..+. +.-.|.. .....+.-||+|+|... .|++++|. |||.++
T Consensus 316 -----------~q~~L~e~me~~~i~i~k~G~~-~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~ 381 (509)
T smart00350 316 -----------DRTAIHEAMEQQTISIAKAGIT-TTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLF 381 (509)
T ss_pred -----------HHHHHHHHHhcCEEEEEeCCEE-EEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEE
Confidence 22345555542211 1223331 12235678999999753 59999998 999988
Q ss_pred eC---CCHHHHHHHHHhhc
Q 012418 295 WA---PTREDRIGVCSGIF 310 (464)
Q Consensus 295 ~i---P~~eeR~eIl~~~~ 310 (464)
.+ |+.+...+|++.++
T Consensus 382 ~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 382 VVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EecCCCChHHHHHHHHHHH
Confidence 75 99999999987654
No 178
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.60 E-value=2.5e-08 Score=93.85 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=23.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
++...+++|+||||||||+||.+|++++
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 3456799999999999999999999985
No 179
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=3.7e-07 Score=94.09 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=100.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------------------------CCCC---ChHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------GNAG---EPAKLIRQRYRE 202 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------------------------~~~G---e~~k~Ir~~F~~ 202 (464)
.-+.|.++||+||+|+||+.+|.++|..+-.. ...+ -....||++-+.
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHH
Confidence 45788999999999999999999999997542 1111 124467766665
Q ss_pred HHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCch
Q 012418 203 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 282 (464)
Q Consensus 203 A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDp 282 (464)
+......+...|+|||+.|.+-. ...|++| ..++ +...++.+|.+|++++.|.|
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~------------~AaNaLL-KtLE-------------EPp~~t~fiL~t~~~~~lLp 153 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTD------------AAANALL-KTLE-------------EPPENTWFFLACREPARLLA 153 (334)
T ss_pred HhhccccCCceEEEEcchHhhCH------------HHHHHHH-HHhc-------------CCCCCeEEEEEECChhhChH
Confidence 53333467778999999997632 2234444 4444 55567789999999999999
Q ss_pred hhccCCcceEEEe-CCCHHHHHHHHHhhcCCCCCChh---HHHHHhcCCChhhHHH
Q 012418 283 PLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKE---DIVKLVDTFPGQSIDF 334 (464)
Q Consensus 283 ALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~v~~~---~la~lt~gfsgadLd~ 334 (464)
-++. |+-.+.. .|+.++..+.+.... +++.+ .++.++.|-++..+++
T Consensus 154 TIrS--RCq~~~~~~~~~~~~~~~L~~~~---~~~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 154 TLRS--RCRLHYLAPPPEQYALTWLSREV---TMSQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HHHh--ccccccCCCCCHHHHHHHHHHcc---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9987 5554322 267777766664322 34444 5566777877766654
No 180
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.56 E-value=8.1e-08 Score=86.31 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=54.3
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC--CCCCChHHHHHHHHH-----HH---HHHHH-hCCcEEEEeccccccccCCCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN--GNAGEPAKLIRQRYR-----EA---ADIIK-KGKMCCLFINDLDAGAGRMGGT 230 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~--~~~Ge~~k~Ir~~F~-----~A---~~~~~-~~~P~ILfIDEIDal~~~r~~~ 230 (464)
|||+|+||+|||++|+++|+.+|.. .....+.-+-.++.. .. ++..+ ---..|+|+|||...-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap------ 75 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP------ 75 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-------
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC------
Confidence 7999999999999999999999987 111111111112111 00 00000 0112499999996332
Q ss_pred CccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccCCcc
Q 012418 231 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 290 (464)
Q Consensus 231 ~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRpGRf 290 (464)
..++..|++++. +..|.++|... .--....||+|-|..+ .|++|++- ||
T Consensus 76 -------pktQsAlLeam~-Er~Vt~~g~~~-~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 -------PKTQSALLEAME-ERQVTIDGQTY-PLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -------HHHHHHHHHHHH-HSEEEETTEEE-E--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -------HHHHHHHHHHHH-cCeEEeCCEEE-ECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 223455666554 23445566511 1124467888999877 78888875 55
No 181
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.9e-07 Score=102.21 Aligned_cols=121 Identities=23% Similarity=0.300 Sum_probs=84.8
Q ss_pred EEEcCCCccHHHHHHHHHHHhC---CC--------------------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecc
Q 012418 163 GIWGGKGQGKSFQCELVFAKMG---IN--------------------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 219 (464)
Q Consensus 163 LL~GPPGtGKT~LAkaIA~elg---~~--------------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDE 219 (464)
+|.|+||+|||-+++-+|...- +| +|-|+.+..++.+.+.. ++..+.||||||
T Consensus 195 vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev----~~~~~vILFIDE 270 (786)
T COG0542 195 VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEV----EKSKNVILFIDE 270 (786)
T ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHH----hcCCCeEEEEec
Confidence 6889999999999999998852 22 89999999998888877 766699999999
Q ss_pred ccccccCCCCCC-ccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeC-CC----CCCchhhccCCcceEE
Q 012418 220 LDAGAGRMGGTT-QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-DF----STLYAPLIRDGRMEKF 293 (464)
Q Consensus 220 IDal~~~r~~~~-~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN-~~----~~LDpALlRpGRfD~~ 293 (464)
|..+.|.....+ .....| ++.-.| .+..+-+|++|. +. =.=|+||-| ||-.+
T Consensus 271 iHtiVGAG~~~G~a~DAaN-iLKPaL-------------------ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ~V 328 (786)
T COG0542 271 IHTIVGAGATEGGAMDAAN-LLKPAL-------------------ARGELRCIGATTLDEYRKYIEKDAALER--RFQKV 328 (786)
T ss_pred hhhhcCCCcccccccchhh-hhHHHH-------------------hcCCeEEEEeccHHHHHHHhhhchHHHh--cCcee
Confidence 999977643111 112222 111112 123334555443 32 235899999 89886
Q ss_pred EeC-CCHHHHHHHHHhh
Q 012418 294 YWA-PTREDRIGVCSGI 309 (464)
Q Consensus 294 i~i-P~~eeR~eIl~~~ 309 (464)
.-- |+.++-+.|++++
T Consensus 329 ~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 329 LVDEPSVEDTIAILRGL 345 (786)
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 553 9999999997654
No 182
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=6.7e-07 Score=100.35 Aligned_cols=101 Identities=16% Similarity=0.211 Sum_probs=64.3
Q ss_pred CCCCCc-EEEEEcCCCccHHHHHHHHHHHhCCC--------------------------CCCCChHHHHHHHHHHHHHHH
Q 012418 155 NVKVPL-ILGIWGGKGQGKSFQCELVFAKMGIN--------------------------GNAGEPAKLIRQRYREAADII 207 (464)
Q Consensus 155 gi~~p~-GLLL~GPPGtGKT~LAkaIA~elg~~--------------------------~~~Ge~~k~Ir~~F~~A~~~~ 207 (464)
.-+.|. ..||.||.|+|||-||+++|..|.=. .|+|-.+.- .+-+. +
T Consensus 516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG--~LTEa----V 589 (786)
T COG0542 516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG--QLTEA----V 589 (786)
T ss_pred CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc--chhHh----h
Confidence 334444 55678999999999999999997511 555533321 11222 2
Q ss_pred HhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC
Q 012418 208 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~ 276 (464)
++.-.|||+||||++-- .-|..+|++++|+-..+-=.| ....-.+.+||+|||-
T Consensus 590 Rr~PySViLlDEIEKAH-------------pdV~nilLQVlDdGrLTD~~G--r~VdFrNtiIImTSN~ 643 (786)
T COG0542 590 RRKPYSVILLDEIEKAH-------------PDVFNLLLQVLDDGRLTDGQG--RTVDFRNTIIIMTSNA 643 (786)
T ss_pred hcCCCeEEEechhhhcC-------------HHHHHHHHHHhcCCeeecCCC--CEEecceeEEEEeccc
Confidence 56667999999998632 235667888888432221111 1233467799999995
No 183
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.3e-07 Score=99.22 Aligned_cols=131 Identities=14% Similarity=0.148 Sum_probs=87.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC--------CCCCChH--H--HHHHHHHHHHHHHHhCCcEEEEeccccccc
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN--------GNAGEPA--K--LIRQRYREAADIIKKGKMCCLFINDLDAGA 224 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------~~~Ge~~--k--~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~ 224 (464)
.+-..+||+||||+|||.||.-||...+.| ..+|-++ + .|+..|+.| .+..-+||++|+|+.+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DA----YkS~lsiivvDdiErLi 611 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDA----YKSPLSIIVVDDIERLL 611 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHh----hcCcceEEEEcchhhhh
Confidence 333789999999999999999999999988 4555444 2 478888888 88888999999999885
Q ss_pred cCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchh-hccCCcceEEEeCCCH---H
Q 012418 225 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTR---E 300 (464)
Q Consensus 225 ~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpA-LlRpGRfD~~i~iP~~---e 300 (464)
..-. -+.--...+.|+|+-++..+ .....+.+|++||.+.+.|-.- ++- -|+-.|.+|+. +
T Consensus 612 D~vp---IGPRfSN~vlQaL~VllK~~----------ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 612 DYVP---IGPRFSNLVLQALLVLLKKQ----------PPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGE 676 (744)
T ss_pred cccc---cCchhhHHHHHHHHHHhccC----------CCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchH
Confidence 4321 11111245666776555511 1223567888898886655432 222 46667777643 4
Q ss_pred HHHHHH
Q 012418 301 DRIGVC 306 (464)
Q Consensus 301 eR~eIl 306 (464)
+..+++
T Consensus 677 ~~~~vl 682 (744)
T KOG0741|consen 677 QLLEVL 682 (744)
T ss_pred HHHHHH
Confidence 455554
No 184
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=1.6e-06 Score=88.88 Aligned_cols=149 Identities=18% Similarity=0.218 Sum_probs=100.2
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----------------------------CC-CCC--hHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------------------GN-AGE--PAKLIRQRYREA 203 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------------------~~-~Ge--~~k~Ir~~F~~A 203 (464)
.-+.|.++||+||.|+||+.+|+++|+.+... .. .|. ....||++-+.+
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~ 100 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA 100 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHH
Confidence 45778999999999999999999999987432 00 122 234566655444
Q ss_pred HHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchh
Q 012418 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283 (464)
Q Consensus 204 ~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpA 283 (464)
......+...|++||++|.+-. ...|++| ..++ +...++.+|.+|++++.|.|-
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~------------~AaNaLL-KtLE-------------EPp~~t~fiL~t~~~~~lLpT 154 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNE------------SASNALL-KTLE-------------EPAPNCLFLLVTHNQKRLLPT 154 (319)
T ss_pred hhCcccCCceEEEecchhhhCH------------HHHHHHH-HHhc-------------CCCCCeEEEEEECChhhChHH
Confidence 2222345568999999997632 2234444 4444 555667899999999999999
Q ss_pred hccCCcceEEEe-CCCHHHHHHHHHhhcCCCCCC-hhHHHHHhcCCChhhHHHH
Q 012418 284 LIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP-KEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 284 LlRpGRfD~~i~-iP~~eeR~eIl~~~~~~~~v~-~~~la~lt~gfsgadLd~~ 335 (464)
++. |+-.+.. .|+.++..+.+... +++ ...+.+++.|-++..+++.
T Consensus 155 I~S--RCq~~~~~~~~~~~~~~~L~~~----~~~~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 155 IVS--RCQQWVVTPPSTAQAMQWLKGQ----GITVPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred HHh--cceeEeCCCCCHHHHHHHHHHc----CCchHHHHHHHcCCCHHHHHHHh
Confidence 887 6665433 27888877776543 222 3466777888877777654
No 185
>PRK04132 replication factor C small subunit; Provisional
Probab=98.50 E-value=8.9e-07 Score=100.70 Aligned_cols=147 Identities=19% Similarity=0.193 Sum_probs=96.6
Q ss_pred EEEc--CCCccHHHHHHHHHHHh---C--CC---CCCCC--hHHHHHHHHHHHHHHHHhC--CcEEEEeccccccccCCC
Q 012418 163 GIWG--GKGQGKSFQCELVFAKM---G--IN---GNAGE--PAKLIRQRYREAADIIKKG--KMCCLFINDLDAGAGRMG 228 (464)
Q Consensus 163 LL~G--PPGtGKT~LAkaIA~el---g--~~---~~~Ge--~~k~Ir~~F~~A~~~~~~~--~P~ILfIDEIDal~~~r~ 228 (464)
+..| |.+.|||++|+++|+++ + .+ -+..+ ....||++...++...... +..|+||||+|.+-..
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~-- 645 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-- 645 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHH--
Confidence 4558 99999999999999998 2 22 22222 3456777666553222211 3479999999987321
Q ss_pred CCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC-CCHHHHHHHHH
Q 012418 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCS 307 (464)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i-P~~eeR~eIl~ 307 (464)
.++.|+.+++ +....+++|++||++..|.++|+. ||..+-.- |+.++...+++
T Consensus 646 -----------AQnALLk~lE-------------ep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 646 -----------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred -----------HHHHHHHHhh-------------CCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHHHHHHHHH
Confidence 2344656665 445678999999999999999987 66553332 77788888877
Q ss_pred hhcCCCCCC--hh---HHHHHhcCCChhhHHHHHH
Q 012418 308 GIFRTDNVP--KE---DIVKLVDTFPGQSIDFFGA 337 (464)
Q Consensus 308 ~~~~~~~v~--~~---~la~lt~gfsgadLd~~~a 337 (464)
.+...++++ .+ .|++.++|=....|..+.+
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEGDMRRAINILQA 734 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 776655543 33 5556666655555655543
No 186
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.50 E-value=1.9e-06 Score=95.80 Aligned_cols=84 Identities=18% Similarity=0.195 Sum_probs=54.1
Q ss_pred CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCC-cccCCCccccCCCCCceEEEEeCCC-CCCchhhccCC
Q 012418 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDF-STLYAPLIRDG 288 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~-~v~ldG~~~~~~~~~V~VIaTTN~~-~~LDpALlRpG 288 (464)
...|||||||+.+-.. +...|++.++... .++-+|... ....++.+|+|+|.. ..|.++|+.
T Consensus 126 ~~GiL~lDEi~~l~~~-------------~q~~Ll~~le~g~~~v~r~g~~~-~~~~~~~lIat~np~eg~l~~~L~d-- 189 (633)
T TIGR02442 126 HRGILYIDEVNLLDDH-------------LVDVLLDAAAMGVNRVEREGLSV-SHPARFVLIGTMNPEEGDLRPQLLD-- 189 (633)
T ss_pred CCCeEEeChhhhCCHH-------------HHHHHHHHHhcCCEEEEECCcee-eecCCeEEEEecCCCCCCCCHHHHh--
Confidence 3469999999866432 2344556665322 233444421 223678899999954 468899997
Q ss_pred cceEEEeC---CCHHHHHHHHHhhc
Q 012418 289 RMEKFYWA---PTREDRIGVCSGIF 310 (464)
Q Consensus 289 RfD~~i~i---P~~eeR~eIl~~~~ 310 (464)
||+..+.+ .+.+++.+|++...
T Consensus 190 R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 190 RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred hcceEEEccCCCchHHHHHHHHHHH
Confidence 89988886 35678888876543
No 187
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.8e-06 Score=88.46 Aligned_cols=92 Identities=23% Similarity=0.225 Sum_probs=67.0
Q ss_pred hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEe----CCCCCCchhh
Q 012418 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG----NDFSTLYAPL 284 (464)
Q Consensus 209 ~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTT----N~~~~LDpAL 284 (464)
..+..|+||||||+++.+.+ .....++..-|+.=|+-|+...+...--|. .....+.+|++. ..|++|-|.|
T Consensus 248 aE~~GIvFIDEIDKIa~~~~-~g~~dvSREGVQRDlLPlvEGstV~TKyG~---VkTdHILFIasGAFh~sKPSDLiPEL 323 (444)
T COG1220 248 AEQNGIVFIDEIDKIAKRGG-SGGPDVSREGVQRDLLPLVEGSTVSTKYGP---VKTDHILFIASGAFHVAKPSDLIPEL 323 (444)
T ss_pred HHhcCeEEEehhhHHHhcCC-CCCCCcchhhhcccccccccCceeeccccc---cccceEEEEecCceecCChhhcChhh
Confidence 34568999999999988765 233377788888888777764443333444 455677888875 4688888888
Q ss_pred ccCCcceEEEeC--CCHHHHHHHH
Q 012418 285 IRDGRMEKFYWA--PTREDRIGVC 306 (464)
Q Consensus 285 lRpGRfD~~i~i--P~~eeR~eIl 306 (464)
- |||--.+++ .+.++-..|+
T Consensus 324 Q--GRfPIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 324 Q--GRFPIRVELDALTKEDFERIL 345 (444)
T ss_pred c--CCCceEEEcccCCHHHHHHHH
Confidence 6 899999997 7888887774
No 188
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.47 E-value=5.7e-07 Score=99.13 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=82.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC-CC----CCChHHH-HH--HHHHHHH--------HHHHhCCcEEEEecccccc
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN-GN----AGEPAKL-IR--QRYREAA--------DIIKKGKMCCLFINDLDAG 223 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~-~~----~Ge~~k~-Ir--~~F~~A~--------~~~~~~~P~ILfIDEIDal 223 (464)
-+|||.|+||||||++|+++++.+... .+ .+.+... +- +++.... ..+.+....+||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 479999999999999999999987542 01 1111111 00 1111000 0111233469999999865
Q ss_pred ccCCCCCCccchhhHHHHHHHHhhhcCCCc-ccCCCccccCCCCCceEEEEeCCCC---CCchhhccCCcceEEEeC---
Q 012418 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTN-VQLPGMYNQEENPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYWA--- 296 (464)
Q Consensus 224 ~~~r~~~~~~~~~~~~v~~~L~~llD~~~~-v~ldG~~~~~~~~~V~VIaTTN~~~---~LDpALlRpGRfD~~i~i--- 296 (464)
-. .+...|++.++.-.. ++-+|... ....++.||+|+|..+ .|+++|+. ||+..+.+
T Consensus 97 ~~-------------~~q~~Ll~al~~g~v~i~r~G~~~-~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~ 160 (589)
T TIGR02031 97 DD-------------GLSNRLLQALDEGVVIVEREGISV-VHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDV 160 (589)
T ss_pred CH-------------HHHHHHHHHHHcCCeEEEECCCce-eecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCC
Confidence 33 233446666653221 22234311 1224567889999875 79999997 89987764
Q ss_pred CCHHHHHHHHHhhc
Q 012418 297 PTREDRIGVCSGIF 310 (464)
Q Consensus 297 P~~eeR~eIl~~~~ 310 (464)
|..++|.+|++..+
T Consensus 161 ~~~~er~eil~~~~ 174 (589)
T TIGR02031 161 ASQDLRVEIVRRER 174 (589)
T ss_pred CCHHHHHHHHHHHH
Confidence 88899999987755
No 189
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=4.8e-07 Score=92.94 Aligned_cols=124 Identities=15% Similarity=0.222 Sum_probs=82.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC--------------------------CCC---------C-----ChHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------------GNA---------G-----EPAKLI 196 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------------------------~~~---------G-----e~~k~I 196 (464)
+.|..+||+||+|+|||++|+.+|+.+... .++ | -....|
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 889999999999999999999999997532 001 1 124557
Q ss_pred HHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC
Q 012418 197 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276 (464)
Q Consensus 197 r~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~ 276 (464)
|++...+...-..+...|++||++|.+-.. .. +.|+..++ +....+.+|++|++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~------------a~-naLLk~LE-------------ep~~~~~~Ilvth~ 152 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ------------AA-NSLLKVLE-------------EPPPQVVFLLVSHA 152 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH------------HH-HHHHHHHH-------------hCcCCCEEEEEeCC
Confidence 776666532222566779999999876332 11 23444444 22234668889999
Q ss_pred CCCCchhhccCCcceEEEe-CCCHHHHHHHHHh
Q 012418 277 FSTLYAPLIRDGRMEKFYW-APTREDRIGVCSG 308 (464)
Q Consensus 277 ~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~ 308 (464)
++.+.+.+.+ |+-.+.. .|+.++..+.+..
T Consensus 153 ~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 153 ADKVLPTIKS--RCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hHhChHHHHH--HhhhhcCCCCCHHHHHHHHHh
Confidence 9999999887 4444322 2677777666643
No 190
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.46 E-value=4.6e-07 Score=89.97 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=46.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC---CC---CCCCChHHHHHHHHHH---HHHHHH-hCCcEEEEecccccc
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG---IN---GNAGEPAKLIRQRYRE---AADIIK-KGKMCCLFINDLDAG 223 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg---~~---~~~Ge~~k~Ir~~F~~---A~~~~~-~~~P~ILfIDEIDal 223 (464)
.+.+++|+||||+|||+||-||++++- +. ..+.+....+...|.. ..++.+ -....||+||||-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 678999999999999999999999974 33 2333444445554442 122334 456789999999643
No 191
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.45 E-value=7.9e-06 Score=84.42 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=27.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|-..-+|||+.||||||||-||-+||.+||-.
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 44456899999999999999999999999843
No 192
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.43 E-value=6e-07 Score=92.70 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=56.2
Q ss_pred CCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCC-cccCCCccccCCCCCceEEEEeCCCC-CCchhhccC
Q 012418 210 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS-TLYAPLIRD 287 (464)
Q Consensus 210 ~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~-~v~ldG~~~~~~~~~V~VIaTTN~~~-~LDpALlRp 287 (464)
....+||||||+.+.. .+.+.|++.++... .++-+|... ....++.+|+|+|-.+ .|+++|+.
T Consensus 130 A~~GvL~lDEi~~L~~-------------~~Q~~Ll~~l~~g~~~v~r~G~~~-~~~~r~iviat~np~eg~l~~~Lld- 194 (337)
T TIGR02030 130 ANRGILYIDEVNLLED-------------HLVDVLLDVAASGWNVVEREGISI-RHPARFVLVGSGNPEEGELRPQLLD- 194 (337)
T ss_pred ccCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEEECCEEE-EcCCCEEEEeccccccCCCCHHHHh-
Confidence 4457999999986522 23445666665322 234455521 2335678888888655 79999997
Q ss_pred CcceEEEeC--CC-HHHHHHHHHhhc
Q 012418 288 GRMEKFYWA--PT-REDRIGVCSGIF 310 (464)
Q Consensus 288 GRfD~~i~i--P~-~eeR~eIl~~~~ 310 (464)
||...+.+ |. .++|.+|++...
T Consensus 195 -Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 195 -RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred -hcceEEECCCCCCHHHHHHHHHhhh
Confidence 88888886 54 488999987643
No 193
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.42 E-value=6e-07 Score=83.06 Aligned_cols=109 Identities=18% Similarity=0.155 Sum_probs=70.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC---------------------------CCCC----ChHHHHHHHHHHHH
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------------------GNAG----EPAKLIRQRYREAA 204 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~---------------------------~~~G----e~~k~Ir~~F~~A~ 204 (464)
-+.|..+||+||+|+||+++|+++|+.+-.. ...+ -....||++...+.
T Consensus 16 ~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~ 95 (162)
T PF13177_consen 16 GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLS 95 (162)
T ss_dssp TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCT
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHH
Confidence 3778999999999999999999999997442 0111 13355665555441
Q ss_pred HHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhh
Q 012418 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 284 (464)
Q Consensus 205 ~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpAL 284 (464)
.....+..-|++|||+|.+-.. ..|+ |+..++ +...++.+|.+|++++.|.|.+
T Consensus 96 ~~~~~~~~KviiI~~ad~l~~~------------a~Na-LLK~LE-------------epp~~~~fiL~t~~~~~il~TI 149 (162)
T PF13177_consen 96 LSPSEGKYKVIIIDEADKLTEE------------AQNA-LLKTLE-------------EPPENTYFILITNNPSKILPTI 149 (162)
T ss_dssp SS-TTSSSEEEEEETGGGS-HH------------HHHH-HHHHHH-------------STTTTEEEEEEES-GGGS-HHH
T ss_pred HHHhcCCceEEEeehHhhhhHH------------HHHH-HHHHhc-------------CCCCCEEEEEEECChHHChHHH
Confidence 1112456789999999976332 2233 445554 4556778999999999999999
Q ss_pred ccCCcceE
Q 012418 285 IRDGRMEK 292 (464)
Q Consensus 285 lRpGRfD~ 292 (464)
+. |+-.
T Consensus 150 ~S--Rc~~ 155 (162)
T PF13177_consen 150 RS--RCQV 155 (162)
T ss_dssp HT--TSEE
T ss_pred Hh--hceE
Confidence 97 5544
No 194
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.41 E-value=6e-07 Score=93.51 Aligned_cols=33 Identities=30% Similarity=0.606 Sum_probs=29.6
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+...+|+||.||||+|+|||+|.-+..+.+...
T Consensus 57 ~~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~ 89 (362)
T PF03969_consen 57 PPPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIK 89 (362)
T ss_pred ccCCCCceEEEECCCCCchhHHHHHHHHhCCcc
Confidence 456789999999999999999999999998764
No 195
>PRK09183 transposase/IS protein; Provisional
Probab=98.41 E-value=5.4e-07 Score=89.58 Aligned_cols=96 Identities=15% Similarity=0.066 Sum_probs=55.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC---CC-CCCCChHHHHHHHHHHH------HHHH-H-hCCcEEEEecccccc
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG---IN-GNAGEPAKLIRQRYREA------ADII-K-KGKMCCLFINDLDAG 223 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg---~~-~~~Ge~~k~Ir~~F~~A------~~~~-~-~~~P~ILfIDEIDal 223 (464)
+.....++|+||||||||+|+.+++.++. .. .+.. ...++.. +..+ ...+ + ...+.+|+|||++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~~-l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQ-LSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHHH-HHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 44556899999999999999999988753 22 1222 1122211 1111 0111 1 356789999999754
Q ss_pred ccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC
Q 012418 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 277 (464)
Q Consensus 224 ~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~ 277 (464)
.... .....|+++++ . .. .+-.+|+|||.+
T Consensus 177 ~~~~-----------~~~~~lf~li~---------~---r~-~~~s~iiTsn~~ 206 (259)
T PRK09183 177 PFSQ-----------EEANLFFQVIA---------K---RY-EKGSMILTSNLP 206 (259)
T ss_pred CCCh-----------HHHHHHHHHHH---------H---HH-hcCcEEEecCCC
Confidence 3221 12245666665 1 11 112589999985
No 196
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.40 E-value=2.9e-06 Score=91.18 Aligned_cols=125 Identities=15% Similarity=0.219 Sum_probs=67.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC-------CCCCChHHHH----------HHHHHHHHHHHHhC---CcEEEEec
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN-------GNAGEPAKLI----------RQRYREAADIIKKG---KMCCLFIN 218 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~-------~~~Ge~~k~I----------r~~F~~A~~~~~~~---~P~ILfID 218 (464)
..-+||+||||||||++|++++..++.. .....+...+ ...|.+. ..+ ...+||+|
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~----~~G~L~~A~lLfLD 114 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRL----TSGYLPEAEIVFLD 114 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhh----cCCccccccEEeec
Confidence 3468999999999999999999987542 0001122111 0111111 111 23499999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCch------hhccCCcceE
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA------PLIRDGRMEK 292 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDp------ALlRpGRfD~ 292 (464)
||.... ..+...|++++..- .+..+|. ....+..++++|||. ||+ +++- ||-.
T Consensus 115 EI~ras-------------p~~QsaLLeam~Er-~~t~g~~--~~~lp~rfiv~ATN~---LPE~g~~leAL~D--RFli 173 (498)
T PRK13531 115 EIWKAG-------------PAILNTLLTAINER-RFRNGAH--EEKIPMRLLVTASNE---LPEADSSLEALYD--RMLI 173 (498)
T ss_pred ccccCC-------------HHHHHHHHHHHHhC-eEecCCe--EEeCCCcEEEEECCC---CcccCCchHHhHh--hEEE
Confidence 995221 23345566666422 1222332 012233455666674 564 8875 7866
Q ss_pred EEeC--CC-HHHHHHHHHh
Q 012418 293 FYWA--PT-REDRIGVCSG 308 (464)
Q Consensus 293 ~i~i--P~-~eeR~eIl~~ 308 (464)
.+.+ |+ .++-.+|+..
T Consensus 174 ri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 174 RLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EEECCCCCchHHHHHHHHc
Confidence 6666 43 3444667654
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.30 E-value=2.1e-06 Score=74.51 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=39.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh--------CCC-----------------------CCCCChHHHHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM--------GIN-----------------------GNAGEPAKLIRQRYREAADI 206 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el--------g~~-----------------------~~~Ge~~k~Ir~~F~~A~~~ 206 (464)
..+.++|+||||+|||++++.++.++ ..+ ...........+++....+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34678999999999999999999987 322 11111100111222333334
Q ss_pred HHhCCcEEEEeccccccc
Q 012418 207 IKKGKMCCLFINDLDAGA 224 (464)
Q Consensus 207 ~~~~~P~ILfIDEIDal~ 224 (464)
++.....+|+|||+|.+.
T Consensus 83 l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHCTEEEEEEETTHHHH
T ss_pred HHhcCCeEEEEeChHhcC
Confidence 466666899999999875
No 198
>PF05729 NACHT: NACHT domain
Probab=98.30 E-value=6.9e-06 Score=73.33 Aligned_cols=134 Identities=20% Similarity=0.213 Sum_probs=73.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC---------------CCCC------ChHHHHHHHHHH--------HHHHHHhC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN---------------GNAG------EPAKLIRQRYRE--------AADIIKKG 210 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~---------------~~~G------e~~k~Ir~~F~~--------A~~~~~~~ 210 (464)
+-++|+|+||+|||++++.++..+... .... .....|...+.. ....+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 358999999999999999999886322 0000 011111111111 11233467
Q ss_pred CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcc
Q 012418 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 290 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRf 290 (464)
.+.+|+||-+|.+...... .........|.+++. . ...+++.+|+|++.. ..+. +.+...-
T Consensus 81 ~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~---------~---~~~~~~~liit~r~~-~~~~-~~~~~~~ 141 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLP---------Q---ALPPGVKLIITSRPR-AFPD-LRRRLKQ 141 (166)
T ss_pred CceEEEEechHhcccchhh-----hHHHHHHHHHHHHhh---------h---ccCCCCeEEEEEcCC-hHHH-HHHhcCC
Confidence 7889999999988664331 112233444444444 1 123456777777543 3322 2221112
Q ss_pred eEEEeC-C-CHHHHHHHHHhhcCC
Q 012418 291 EKFYWA-P-TREDRIGVCSGIFRT 312 (464)
Q Consensus 291 D~~i~i-P-~~eeR~eIl~~~~~~ 312 (464)
...+.+ | +.+++.+.++.+|..
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 142 AQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred CcEEEECCCCHHHHHHHHHHHhhc
Confidence 234555 3 778888888877743
No 199
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.30 E-value=3.8e-07 Score=91.44 Aligned_cols=136 Identities=18% Similarity=0.246 Sum_probs=78.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCCC--------CCCChHHHHHHHHHHHHHHH-------HhCCcEEEEecccccc
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGING--------NAGEPAKLIRQRYREAADII-------KKGKMCCLFINDLDAG 223 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~~--------~~Ge~~k~Ir~~F~~A~~~~-------~~~~P~ILfIDEIDal 223 (464)
.+-+||.||+|||||.+++..-.++.-.. ........+....+...+.. +.++.+|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 45789999999999999998776654331 11112233322222110000 1456789999999765
Q ss_pred ccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCC-----CCCceEEEEeCCCC---CCchhhccCCcceEEEe
Q 012418 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-----NPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYW 295 (464)
Q Consensus 224 ~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~-----~~~V~VIaTTN~~~---~LDpALlRpGRfD~~i~ 295 (464)
..+..+ .+....+|.+++| ..|.|.... ..++-+|+|.|... .|++.|+| .|- .+.
T Consensus 113 ~~d~yg-------tq~~iElLRQ~i~------~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~ 176 (272)
T PF12775_consen 113 QPDKYG-------TQPPIELLRQLID------YGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILN 176 (272)
T ss_dssp ---TTS---------HHHHHHHHHHH------CSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE
T ss_pred CCCCCC-------CcCHHHHHHHHHH------hcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEE
Confidence 444332 1345577777776 456655332 25678889888532 47888887 444 344
Q ss_pred C--CCHHHHHHHHHhhc
Q 012418 296 A--PTREDRIGVCSGIF 310 (464)
Q Consensus 296 i--P~~eeR~eIl~~~~ 310 (464)
+ |+.+....|+..++
T Consensus 177 ~~~p~~~sl~~If~~il 193 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSIL 193 (272)
T ss_dssp ----TCCHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHH
Confidence 4 89998888855443
No 200
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.27 E-value=2.8e-06 Score=75.09 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=59.2
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC------------------------------------CCCCChHHHHHHHHHHHHH
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN------------------------------------GNAGEPAKLIRQRYREAAD 205 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~------------------------------------~~~Ge~~k~Ir~~F~~A~~ 205 (464)
++|+||||+|||+++..++..+... ...... .+......+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDP--AAARLLSKAER 79 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCC--cHHHHHHHHHH
Confidence 6899999999999999999887321 000000 01111112223
Q ss_pred HHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCch
Q 012418 206 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 282 (464)
Q Consensus 206 ~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDp 282 (464)
.+....|.+|+|||+..+...... ......+.+...+.++.. . ....++.+|+|++.......
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~--~~~~~~~~~~~~l~~l~~---------~---~~~~~~~vv~~~~~~~~~~~ 142 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALRE--IREGYPGELDEELRELLE---------R---ARKGGVTVIFTLQVPSGDKG 142 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHH--HHhcCChHHHHHHHHHHH---------H---HhcCCceEEEEEecCCcccc
Confidence 345788999999999987543210 000111233344444443 1 12246788888887765543
No 201
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.26 E-value=1.9e-05 Score=77.81 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+..+.|.|||++|+|||+||..+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 67789999999999999999999988
No 202
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.22 E-value=3.7e-06 Score=82.69 Aligned_cols=126 Identities=13% Similarity=0.252 Sum_probs=70.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh-CCC-----------CCCCChHHHHH---HHHHHHHHHHHhCCcEEEEecccccccc
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM-GIN-----------GNAGEPAKLIR---QRYREAADIIKKGKMCCLFINDLDAGAG 225 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el-g~~-----------~~~Ge~~k~Ir---~~F~~A~~~~~~~~P~ILfIDEIDal~~ 225 (464)
.++|.||||||||+-+.|+|.+| |-. ..-| ..-+| ..|..-.-.+..++-.||++||.|++..
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA 127 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh
Confidence 57899999999999999999995 311 1112 22233 2343321111146667999999997632
Q ss_pred CCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC-CCHHHHHH
Q 012418 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIG 304 (464)
Q Consensus 226 ~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i-P~~eeR~e 304 (464)
. .+|.|.+.+. .| .+..-++.++|..+.|-+|+-. |+-..-+- -+..+.+.
T Consensus 128 g-------------AQQAlRRtME---------iy----S~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~qiL~ 179 (333)
T KOG0991|consen 128 G-------------AQQALRRTME---------IY----SNTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQQILK 179 (333)
T ss_pred H-------------HHHHHHHHHH---------HH----cccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHHHHHH
Confidence 1 1233333333 22 1223478889999999888766 33332221 34444443
Q ss_pred HHHhhcCCCCCC
Q 012418 305 VCSGIFRTDNVP 316 (464)
Q Consensus 305 Il~~~~~~~~v~ 316 (464)
-+..+.+.++++
T Consensus 180 Rl~~v~k~Ekv~ 191 (333)
T KOG0991|consen 180 RLLEVAKAEKVN 191 (333)
T ss_pred HHHHHHHHhCCC
Confidence 344444444444
No 203
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.21 E-value=1.8e-05 Score=78.19 Aligned_cols=149 Identities=13% Similarity=0.165 Sum_probs=84.8
Q ss_pred HHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHH-hCCcEEEEecccccc
Q 012418 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAG 223 (464)
Q Consensus 147 ~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--~~~Ge~~k~Ir~~F~~A~~~~~-~~~P~ILfIDEIDal 223 (464)
.+|-..+..-.+-.-+||||--|||||+|+||+-++.+-. ..+--.-.-|. -+-...+.++ ....-|||+||+-
T Consensus 73 ~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~-~Lp~l~~~Lr~~~~kFIlFcDDLS-- 149 (287)
T COG2607 73 VRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA-TLPDLVELLRARPEKFILFCDDLS-- 149 (287)
T ss_pred HHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh-hHHHHHHHHhcCCceEEEEecCCC--
Confidence 3444443334455789999999999999999999997644 11111111111 1112233445 6677899999983
Q ss_pred ccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhcc-C---------------
Q 012418 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR-D--------------- 287 (464)
Q Consensus 224 ~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlR-p--------------- 287 (464)
+...+. .-.. |-.+ ++|.. +....+|+|-+|+||-..|+.-..- .
T Consensus 150 ---Fe~gd~---~yK~----LKs~--------LeG~v-e~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEK 210 (287)
T COG2607 150 ---FEEGDD---AYKA----LKSA--------LEGGV-EGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEK 210 (287)
T ss_pred ---CCCCch---HHHH----HHHH--------hcCCc-ccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHh
Confidence 221111 1111 2222 23431 1234689999999999888865432 1
Q ss_pred ----CcceEEEeC--CCHHHHHHHHHhhcCCCCCCh
Q 012418 288 ----GRMEKFYWA--PTREDRIGVCSGIFRTDNVPK 317 (464)
Q Consensus 288 ----GRfD~~i~i--P~~eeR~eIl~~~~~~~~v~~ 317 (464)
.||-..+-+ ++.++=..|++.+.+..+++.
T Consensus 211 lSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 211 LSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred hchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 244444443 566666666666665555443
No 204
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.20 E-value=7.4e-06 Score=89.14 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=34.1
Q ss_pred HHHHhhhh--CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 145 HITKNFLN--LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 145 ~i~Kn~l~--~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..++.|+. ..+....+.|||+||||||||++++++|+++|..
T Consensus 29 ~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~ 72 (519)
T PF03215_consen 29 EEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFE 72 (519)
T ss_pred HHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 34566765 3355556799999999999999999999999876
No 205
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.19 E-value=3e-06 Score=72.94 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=52.8
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC--------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCcc
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN--------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 233 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~--------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~ 233 (464)
|.||||||+|||++|+.+|..+.-. -|...+. .-|-.. -.++ .|+++||+.......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~----~~~w~g----Y~~q-~vvi~DD~~~~~~~~------ 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPG----DKFWDG----YQGQ-PVVIIDDFGQDNDGY------ 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCc----cchhhc----cCCC-cEEEEeecCcccccc------
Confidence 5799999999999999999887522 1111111 111111 1344 588999997543221
Q ss_pred chhhHHHHHHHHhhhcCC-CcccCCCcccc-CCCCCceEEEEeCC
Q 012418 234 TVNNQMVNATLMNIADNP-TNVQLPGMYNQ-EENPRVPIIVTGND 276 (464)
Q Consensus 234 ~~~~~~v~~~L~~llD~~-~~v~ldG~~~~-~~~~~V~VIaTTN~ 276 (464)
. ......+.+++++. -.+.|.+...+ ..-....||+|||.
T Consensus 66 --~-~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 66 --N-YSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred --c-hHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 1 11233455666532 22333333111 12234679999984
No 206
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.16 E-value=2.7e-06 Score=79.48 Aligned_cols=117 Identities=18% Similarity=0.275 Sum_probs=67.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCC-CChHH-HHHHHHHHH-----------HHHHHhCCcEEEEec
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------GNA-GEPAK-LIRQRYREA-----------ADIIKKGKMCCLFIN 218 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~-Ge~~k-~Ir~~F~~A-----------~~~~~~~~P~ILfID 218 (464)
.|.-|||+|++||||+++|++|.+..... -.. .-+.. .-.++|... ...+....-..||||
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld 100 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLD 100 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEE
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceEEeec
Confidence 34679999999999999999998865432 111 22333 334667532 134556677899999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceE
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 292 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~ 292 (464)
|||.+-.. ++.-|+++++.....-+.+. .....++-||+|||.. |.. ++..|+|..
T Consensus 101 ~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~st~~~--l~~-~v~~g~fr~ 156 (168)
T PF00158_consen 101 EIEDLPPE-------------LQAKLLRVLEEGKFTRLGSD--KPVPVDVRIIASTSKD--LEE-LVEQGRFRE 156 (168)
T ss_dssp TGGGS-HH-------------HHHHHHHHHHHSEEECCTSS--SEEE--EEEEEEESS---HHH-HHHTTSS-H
T ss_pred chhhhHHH-------------HHHHHHHHHhhchhcccccc--ccccccceEEeecCcC--HHH-HHHcCCChH
Confidence 99977443 33456666663222222221 1123577899999973 333 444566644
No 207
>PHA00729 NTP-binding motif containing protein
Probab=98.16 E-value=4.1e-06 Score=82.01 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=23.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..|+|+|+||||||+||.+|+++++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999986
No 208
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.16 E-value=0.0001 Score=87.32 Aligned_cols=148 Identities=19% Similarity=0.369 Sum_probs=82.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC---------CCCCCh---------------HH----HHHHHHH-----
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------GNAGEP---------------AK----LIRQRYR----- 201 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~---------~~~Ge~---------------~k----~Ir~~F~----- 201 (464)
.....+.+.||||+|+|||+||+++++.+... .++... .. .+.+++.
T Consensus 203 ~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~ 282 (1153)
T PLN03210 203 ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK 282 (1153)
T ss_pred ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc
Confidence 34456789999999999999999999986433 011100 00 1111111
Q ss_pred -----HHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC
Q 012418 202 -----EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276 (464)
Q Consensus 202 -----~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~ 276 (464)
...+. -..++.+|+|||+|.. .+...|....+ | ...+--||+||.+
T Consensus 283 ~~~~~~~~~~-L~~krvLLVLDdv~~~---------------~~l~~L~~~~~----------~---~~~GsrIIiTTrd 333 (1153)
T PLN03210 283 IYHLGAMEER-LKHRKVLIFIDDLDDQ---------------DVLDALAGQTQ----------W---FGSGSRIIVITKD 333 (1153)
T ss_pred cCCHHHHHHH-HhCCeEEEEEeCCCCH---------------HHHHHHHhhCc----------c---CCCCcEEEEEeCc
Confidence 11111 1567889999998631 11122211111 0 1123358888886
Q ss_pred CCCCchhhccCCcceEEEeC--CCHHHHHHHHHhh-cCCCCCCh------hHHHHHhcCCChhhHHHHHH
Q 012418 277 FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGI-FRTDNVPK------EDIVKLVDTFPGQSIDFFGA 337 (464)
Q Consensus 277 ~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~-~~~~~v~~------~~la~lt~gfsgadLd~~~a 337 (464)
.. +++....++.+.+ |+.++..+++..+ +.....+. .+|++.+.|.|-| |..+|+
T Consensus 334 ~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA-l~vlgs 397 (1153)
T PLN03210 334 KH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG-LNVLGS 397 (1153)
T ss_pred HH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH-HHHHHH
Confidence 44 3343456777775 8888888886554 43332221 1577888888743 444443
No 209
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.13 E-value=1.2e-05 Score=83.66 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
..+++||.||||||||.||-+||++||-
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~ 76 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGE 76 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence 4579999999999999999999999984
No 210
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.09 E-value=6.9e-06 Score=91.12 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=84.6
Q ss_pred ccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCC-ChHH
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAG-EPAK 194 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~G-e~~k 194 (464)
.++|+++++. .+.+ +.+.+.++.+.. ...-|||+|++||||+++|++|.+..... -..+ -++.
T Consensus 321 ~~~~~~l~g~---s~~~--~~~~~~~~~~a~-----~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQD---SPQM--RRLIHFGRQAAK-----SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEEC---CHHH--HHHHHHHHHHhC-----cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 3456777664 2222 123333444432 23348999999999999999999876532 1111 1233
Q ss_pred HH-HHHHHHHH--------HHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCC
Q 012418 195 LI-RQRYREAA--------DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265 (464)
Q Consensus 195 ~I-r~~F~~A~--------~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~ 265 (464)
.+ .++|..+. ..+.......|||||||.+-.. ++..|++++++.....+++. ....
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~--~~~~ 455 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSR--RLIP 455 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceEE
Confidence 33 45665320 0122345678999999976432 23446666653322222222 0111
Q ss_pred CCceEEEEeCCCCCCchhhccCCcc---------eEEEeCCCHHHHH
Q 012418 266 PRVPIIVTGNDFSTLYAPLIRDGRM---------EKFYWAPTREDRI 303 (464)
Q Consensus 266 ~~V~VIaTTN~~~~LDpALlRpGRf---------D~~i~iP~~eeR~ 303 (464)
-++-||+|||.. + ..+...|+| ...|.+|...+|.
T Consensus 456 ~~~riI~~t~~~--l-~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~ 499 (638)
T PRK11388 456 VDVRVIATTTAD--L-AMLVEQNRFSRQLYYALHAFEITIPPLRMRR 499 (638)
T ss_pred eeEEEEEeccCC--H-HHHHhcCCChHHHhhhhceeEEeCCChhhhh
Confidence 256789999874 2 334444555 3445568888883
No 211
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.08 E-value=3.8e-05 Score=72.10 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
....++|+||.|+|||+|++.+.+.+.
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 356899999999999999999999983
No 212
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.07 E-value=3.2e-05 Score=72.29 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.+.+.-++++||||+|||+++.-|+..|.
T Consensus 2 ~~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 2 IKMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CCcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 35567899999999999999999998873
No 213
>PHA02774 E1; Provisional
Probab=98.06 E-value=9.8e-06 Score=88.58 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=66.8
Q ss_pred HHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 145 ~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
..+|+++ .+++....++||||||||||++|-+|++.++-. .++.. +.-|-.- ....-.|++|||+-.
T Consensus 422 ~~lk~~l--~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~-----~s~FwLq----pl~d~ki~vlDD~t~ 490 (613)
T PHA02774 422 TALKDFL--KGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS-----KSHFWLQ----PLADAKIALLDDATH 490 (613)
T ss_pred HHHHHHH--hcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC-----ccccccc----hhccCCEEEEecCcc
Confidence 3445554 355555699999999999999999999998633 22222 1222110 122235999999910
Q ss_pred cccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccc-cCCCCCceEEEEeCCCCC
Q 012418 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN-QEENPRVPIIVTGNDFST 279 (464)
Q Consensus 223 l~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~-~~~~~~V~VIaTTN~~~~ 279 (464)
. -..-+...|.+++|.. .|.+|-... ......-|+|+|||---.
T Consensus 491 ---------~---~w~y~d~~Lrn~LdG~-~v~lD~Khk~~~q~k~pPlIITSN~d~~ 535 (613)
T PHA02774 491 ---------P---CWDYIDTYLRNALDGN-PVSIDCKHKAPVQIKCPPLLITSNIDVK 535 (613)
T ss_pred ---------h---HHHHHHHHHHHHcCCC-cceeeecccCcccccCCCEEEecCCCcc
Confidence 0 0123344578888854 555554322 233455699999994333
No 214
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.02 E-value=8.6e-06 Score=83.74 Aligned_cols=129 Identities=17% Similarity=0.206 Sum_probs=73.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCC-ChHHHH-HHHHHHHH-----------HHHHhCCcEEEEec
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAG-EPAKLI-RQRYREAA-----------DIIKKGKMCCLFIN 218 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~G-e~~k~I-r~~F~~A~-----------~~~~~~~P~ILfID 218 (464)
...-|||+|++||||+++|++|....... -..+ -++..+ .++|.... ..+.......||||
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ld 100 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLD 100 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCEEEeC
Confidence 34568999999999999999998765432 1111 122332 34554210 11234456899999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC-------CCCchhhccCCcce
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIRDGRME 291 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~-------~~LDpALlRpGRfD 291 (464)
|||.+-.. ++..|++++++.....+.+. .....+|-||+|||.. ..+.+.|.. |+.
T Consensus 101 ei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~ 163 (329)
T TIGR02974 101 ELATASLL-------------VQEKLLRVIEYGEFERVGGS--QTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA 163 (329)
T ss_pred ChHhCCHH-------------HHHHHHHHHHcCcEEecCCC--ceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc
Confidence 99976432 23445566653221112222 1223567889999863 234455554 553
Q ss_pred -EEEeCCCHHHHH
Q 012418 292 -KFYWAPTREDRI 303 (464)
Q Consensus 292 -~~i~iP~~eeR~ 303 (464)
..|.+|...+|.
T Consensus 164 ~~~i~lPpLReR~ 176 (329)
T TIGR02974 164 FDVITLPPLRERQ 176 (329)
T ss_pred chhcCCCchhhhh
Confidence 345578887773
No 215
>PF13173 AAA_14: AAA domain
Probab=98.02 E-value=4.6e-05 Score=67.23 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=38.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC--CC-CC--CCChHH-HHHH--HHHHHHHHHHhCCcEEEEecccccc
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMG--IN-GN--AGEPAK-LIRQ--RYREAADIIKKGKMCCLFINDLDAG 223 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg--~~-~~--~Ge~~k-~Ir~--~F~~A~~~~~~~~P~ILfIDEIDal 223 (464)
+.++|+||.|||||++++.+++++. -+ -+ ..+... .... ......+. ....+.+|||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLEL-IKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHh-hccCCcEEEEehhhhh
Confidence 5789999999999999999999876 22 11 112111 1110 11111111 1236789999999766
No 216
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.00 E-value=2.7e-05 Score=73.74 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=47.6
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC---C----CCCCChHHHHHHH--------------------------H
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGI---N----GNAGEPAKLIRQR--------------------------Y 200 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~---~----~~~Ge~~k~Ir~~--------------------------F 200 (464)
.|++....++|+||||||||++|..++.+... . ..-+.....++++ +
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 37788899999999999999999998876522 2 1111122222221 2
Q ss_pred HHHHHHHHhCCcEEEEecccccccc
Q 012418 201 REAADIIKKGKMCCLFINDLDAGAG 225 (464)
Q Consensus 201 ~~A~~~~~~~~P~ILfIDEIDal~~ 225 (464)
....+.+....+++|+||-|.++..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhH
Confidence 2223334556899999999998854
No 217
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.97 E-value=1.6e-05 Score=81.52 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=74.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCCC-hHHHH-HHHHHHH-----------HHHHHhCCcEEEEec
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAGE-PAKLI-RQRYREA-----------ADIIKKGKMCCLFIN 218 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~Ge-~~k~I-r~~F~~A-----------~~~~~~~~P~ILfID 218 (464)
.+.-|||+|++||||+++|++|....... -..+. ++..+ ..+|... ...+.......||||
T Consensus 28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~ 107 (326)
T PRK11608 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLD 107 (326)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeC
Confidence 34569999999999999999998765422 11111 22222 3444422 111234456789999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC-------CCCchhhccCCcc-
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIRDGRM- 290 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~-------~~LDpALlRpGRf- 290 (464)
|||.+-.. ++..|+++++........+. .....++.||+||+.. ..+.+.|.. ||
T Consensus 108 ~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~ 170 (326)
T PRK11608 108 ELATAPML-------------VQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA 170 (326)
T ss_pred ChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC
Confidence 99976432 23446666653211111221 1112457788888763 345566654 56
Q ss_pred eEEEeCCCHHHHH
Q 012418 291 EKFYWAPTREDRI 303 (464)
Q Consensus 291 D~~i~iP~~eeR~ 303 (464)
...|.+|...+|.
T Consensus 171 ~~~i~lPpLReR~ 183 (326)
T PRK11608 171 FDVVQLPPLRERQ 183 (326)
T ss_pred CCEEECCChhhhh
Confidence 4457788888873
No 218
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.97 E-value=7e-05 Score=75.92 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.+++||.||||||||.||-+|+.|||-.
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~k 91 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPK 91 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCC
Confidence 4699999999999999999999998743
No 219
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.96 E-value=1.1e-05 Score=92.01 Aligned_cols=131 Identities=14% Similarity=0.173 Sum_probs=75.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC--------CCCCChHHHH-HHHH-HHH---HHHHHhCCcEEEEeccccccccC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN--------GNAGEPAKLI-RQRY-REA---ADIIKKGKMCCLFINDLDAGAGR 226 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~--------~~~Ge~~k~I-r~~F-~~A---~~~~~~~~P~ILfIDEIDal~~~ 226 (464)
.-|||+|+||||||.+|++|++-.... ..+|-.+... ++.. ... ...+......+|+|||+|++...
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~ 572 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNE 572 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHH
Confidence 479999999999999999999854322 1111111111 0000 000 00111233469999999976322
Q ss_pred CCCCCccchhhHHHHHHHHhhhcCCCc-ccCCCccccCCCCCceEEEEeCCC-------------CCCchhhccCCcceE
Q 012418 227 MGGTTQYTVNNQMVNATLMNIADNPTN-VQLPGMYNQEENPRVPIIVTGNDF-------------STLYAPLIRDGRMEK 292 (464)
Q Consensus 227 r~~~~~~~~~~~~v~~~L~~llD~~~~-v~ldG~~~~~~~~~V~VIaTTN~~-------------~~LDpALlRpGRfD~ 292 (464)
....|++++...+. +.-.|. ...-..+.-||+|+|.. -.|+++||. |||.
T Consensus 573 -------------~Q~aLlEaMEqqtIsI~KaGi-~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDL 636 (915)
T PTZ00111 573 -------------SRLSLYEVMEQQTVTIAKAGI-VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDL 636 (915)
T ss_pred -------------HHHHHHHHHhCCEEEEecCCc-ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcE
Confidence 22345555553221 122232 11234677899999984 247899997 9999
Q ss_pred EEeC---CCHHHHHHHH
Q 012418 293 FYWA---PTREDRIGVC 306 (464)
Q Consensus 293 ~i~i---P~~eeR~eIl 306 (464)
++.+ |+.+.=..|.
T Consensus 637 If~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 637 IYLVLDHIDQDTDQLIS 653 (915)
T ss_pred EEEecCCCChHHHHHHH
Confidence 8885 7665545553
No 220
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.96 E-value=1.4e-05 Score=86.97 Aligned_cols=127 Identities=13% Similarity=0.186 Sum_probs=70.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCCC-hHHHH-HHHHHHHH-----------HHHHhCCcEEEEec
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAGE-PAKLI-RQRYREAA-----------DIIKKGKMCCLFIN 218 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~Ge-~~k~I-r~~F~~A~-----------~~~~~~~P~ILfID 218 (464)
...-|||+|++|||||++|++|....... -..+. ++..+ .++|.... ..+.......||||
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ld 297 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLD 297 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEe
Confidence 34568999999999999999999876432 11111 22322 33443210 01223446799999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcce-------
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME------- 291 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD------- 291 (464)
|||.+-.. ++..|++++++.....+.+. .....++-||+|||.. +. .++..|+|.
T Consensus 298 ei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s~~~--l~-~~~~~~~f~~~L~~rl 359 (534)
T TIGR01817 298 EIGEISPA-------------FQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAATNRD--LE-EAVAKGEFRADLYYRI 359 (534)
T ss_pred chhhCCHH-------------HHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeCCCC--HH-HHHHcCCCCHHHHHHh
Confidence 99976432 23446666653221111221 0112357789988764 21 233345552
Q ss_pred --EEEeCCCHHHH
Q 012418 292 --KFYWAPTREDR 302 (464)
Q Consensus 292 --~~i~iP~~eeR 302 (464)
..|.+|...+|
T Consensus 360 ~~~~i~lPpLreR 372 (534)
T TIGR01817 360 NVVPIFLPPLRER 372 (534)
T ss_pred cCCeeeCCCcccc
Confidence 24557877766
No 221
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.95 E-value=5.8e-05 Score=83.46 Aligned_cols=124 Identities=22% Similarity=0.307 Sum_probs=81.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC-------CC------------------------CCCCChH------HHHHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMG-------IN------------------------GNAGEPA------KLIRQRYREA 203 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg-------~~------------------------~~~Ge~~------k~Ir~~F~~A 203 (464)
.+.+.|-||||||.++..|-++|. ++ .+.|+.. ..++..|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 577889999999999999999875 22 2223221 1222222211
Q ss_pred HHHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCch
Q 012418 204 ADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 282 (464)
Q Consensus 204 ~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDp 282 (464)
+ ...+|||+|||+|.+.++.. ..|+|+.| |-.....++.||+-+|..+. |+
T Consensus 504 ----k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fd----------Wpt~~~sKLvvi~IaNTmdl-PE 555 (767)
T KOG1514|consen 504 ----KPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFD----------WPTLKNSKLVVIAIANTMDL-PE 555 (767)
T ss_pred ----CCCCCCEEEEeccHHHHhcccH-------------HHHHHHhc----------CCcCCCCceEEEEecccccC-HH
Confidence 2 56789999999999998754 34788887 66667788889998888654 44
Q ss_pred hhcc---CCcce--EEEeC-CCHHHHHHHHHhhcCC
Q 012418 283 PLIR---DGRME--KFYWA-PTREDRIGVCSGIFRT 312 (464)
Q Consensus 283 ALlR---pGRfD--~~i~i-P~~eeR~eIl~~~~~~ 312 (464)
-++- ..|+. ++-.. .+.++..+|+..-+..
T Consensus 556 r~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 556 RLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred HHhccchhhhccceeeecCCCCHHHHHHHHHHhhcc
Confidence 4432 11222 22222 5899999997665544
No 222
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.94 E-value=2.8e-05 Score=79.41 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=76.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC-------------CCCCC-hHHHHHHHHHHHHHH--HH-hCCcEEEEecccccc
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN-------------GNAGE-PAKLIRQRYREAADI--IK-KGKMCCLFINDLDAG 223 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~-------------~~~Ge-~~k~Ir~~F~~A~~~--~~-~~~P~ILfIDEIDal 223 (464)
.+|+|||||||||+...++|..+-.+ ..-|- ..+.-...|..+... -. ...+.++++||.|+.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM 143 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM 143 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHh
Confidence 89999999999999999999987552 11111 112222445444110 00 236889999999987
Q ss_pred ccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeCC-CHHHH
Q 012418 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-TREDR 302 (464)
Q Consensus 224 ~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~iP-~~eeR 302 (464)
...-. ..|.+.+. ....++-++.-+|.+..+.||+.. ||-++=.-| +.+.-
T Consensus 144 T~~AQ-------------nALRRvie-------------k~t~n~rF~ii~n~~~ki~pa~qs--Rctrfrf~pl~~~~~ 195 (360)
T KOG0990|consen 144 TRDAQ-------------NALRRVIE-------------KYTANTRFATISNPPQKIHPAQQS--RCTRFRFAPLTMAQQ 195 (360)
T ss_pred hHHHH-------------HHHHHHHH-------------HhccceEEEEeccChhhcCchhhc--ccccCCCCCCChhhh
Confidence 54311 22333333 334556677889999999999986 777755533 33333
Q ss_pred HHHHHhhcCCC
Q 012418 303 IGVCSGIFRTD 313 (464)
Q Consensus 303 ~eIl~~~~~~~ 313 (464)
..++..+...+
T Consensus 196 ~~r~shi~e~e 206 (360)
T KOG0990|consen 196 TERQSHIRESE 206 (360)
T ss_pred hhHHHHHHhcc
Confidence 44444444433
No 223
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.92 E-value=3.3e-05 Score=84.08 Aligned_cols=155 Identities=16% Similarity=0.218 Sum_probs=81.0
Q ss_pred ccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-------CCCCChHH
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------GNAGEPAK 194 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------~~~Ge~~k 194 (464)
.++|+++++. .+ .+ +.+.+.++.+.. ...-|||+|++||||+++|++|....... .-..-+..
T Consensus 200 ~~~f~~~ig~---s~-~~-~~~~~~~~~~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 200 DSAFSQIVAV---SP-KM-RQVVEQARKLAM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred cccccceeEC---CH-HH-HHHHHHHHHHhC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 4577888875 12 22 123344444432 22349999999999999999987664322 11111222
Q ss_pred HH-HHHHHHHH-----------HHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCcccc
Q 012418 195 LI-RQRYREAA-----------DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 262 (464)
Q Consensus 195 ~I-r~~F~~A~-----------~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~ 262 (464)
.+ .++|..+. ..+.......|||||||.+-.. ++.-|++++.+.......+. .
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~ 334 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVGED--H 334 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccCCCC--c
Confidence 22 34554221 1122344678999999976432 22345555552211111111 1
Q ss_pred CCCCCceEEEEeCCC-------CCCchhhccCCcce-EEEeCCCHHHHH
Q 012418 263 EENPRVPIIVTGNDF-------STLYAPLIRDGRME-KFYWAPTREDRI 303 (464)
Q Consensus 263 ~~~~~V~VIaTTN~~-------~~LDpALlRpGRfD-~~i~iP~~eeR~ 303 (464)
....+|-||+||+.. ..+.+.|.. |+. ..+.+|...+|.
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~ 381 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRP 381 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccCh
Confidence 122456788888764 123333433 433 345568877774
No 224
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.88 E-value=9.7e-05 Score=66.34 Aligned_cols=43 Identities=37% Similarity=0.617 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 141 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 141 ~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.++..++.++..+.-+.|+.+-|+||||||||++++.||+.+
T Consensus 35 ~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 35 EVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4567778888887788899999999999999999999999995
No 225
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.88 E-value=2.9e-05 Score=84.25 Aligned_cols=123 Identities=13% Similarity=0.096 Sum_probs=70.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------------CCCCChH---HHHHHHHH-------------H----HHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------------GNAGEPA---KLIRQRYR-------------E----AAD 205 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~Ge~~---k~Ir~~F~-------------~----A~~ 205 (464)
....++|.||||||||++++.++..+.-. ...|... ...+..|+ - --.
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG 288 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPG 288 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhh
Confidence 34689999999999999999999764211 1111100 00001111 0 001
Q ss_pred HHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcc-cCCCccccCCCCCceEEEEeCCCC------
Q 012418 206 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV-QLPGMYNQEENPRVPIIVTGNDFS------ 278 (464)
Q Consensus 206 ~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v-~ldG~~~~~~~~~V~VIaTTN~~~------ 278 (464)
.+.....-+||||||+.+- ..+.+.|.+.+++.... .-.|. ......++.+|+|+|...
T Consensus 289 ~l~~A~gGvLfLDEi~e~~-------------~~~~~~L~~~LE~g~v~I~r~g~-~~~~pa~f~lIAa~NP~pcG~~~~ 354 (506)
T PRK09862 289 EISLAHNGVLFLDELPEFE-------------RRTLDALREPIESGQIHLSRTRA-KITYPARFQLVAAMNPSPTGHYQG 354 (506)
T ss_pred HhhhccCCEEecCCchhCC-------------HHHHHHHHHHHHcCcEEEecCCc-ceeccCCEEEEEeecCccceecCC
Confidence 2334445799999996431 23455666666532211 11111 001235678999999753
Q ss_pred ---------------CCchhhccCCcceEEEeC
Q 012418 279 ---------------TLYAPLIRDGRMEKFYWA 296 (464)
Q Consensus 279 ---------------~LDpALlRpGRfD~~i~i 296 (464)
.|..+++- |||..+++
T Consensus 355 ~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v 385 (506)
T PRK09862 355 NHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEI 385 (506)
T ss_pred CCCCcCHHHHHHHHhhCCHhHHh--hccEEEEe
Confidence 57789996 99999997
No 226
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.88 E-value=1.8e-05 Score=85.72 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=71.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------------CCCCChH---HHHHHHHH----HH-------------HH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------------GNAGEPA---KLIRQRYR----EA-------------AD 205 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~Ge~~---k~Ir~~F~----~A-------------~~ 205 (464)
....++|.||||||||+++++++..+--. ...|... ..-+..|+ .+ -.
T Consensus 210 ~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG 289 (499)
T TIGR00368 210 GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPG 289 (499)
T ss_pred CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchh
Confidence 33579999999999999999999754210 1111100 00001111 00 01
Q ss_pred HHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCc-ccCCCccccCCCCCceEEEEeCCC-----C-
Q 012418 206 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN-VQLPGMYNQEENPRVPIIVTGNDF-----S- 278 (464)
Q Consensus 206 ~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~-v~ldG~~~~~~~~~V~VIaTTN~~-----~- 278 (464)
.+......+|||||++.+. ..+...|.+.+++... +.-.|.. .....++.+|+|+|.- .
T Consensus 290 ~i~lA~~GvLfLDEi~e~~-------------~~~~~~L~~~LE~~~v~i~r~g~~-~~~pa~frlIaa~Npcpcg~~~~ 355 (499)
T TIGR00368 290 EISLAHNGVLFLDELPEFK-------------RSVLDALREPIEDGSISISRASAK-IFYPARFQLVAAMNPCPCGHYGG 355 (499)
T ss_pred hhhccCCCeEecCChhhCC-------------HHHHHHHHHHHHcCcEEEEecCcc-eeccCCeEEEEecCCcccCcCCC
Confidence 2234445799999998532 2344556666653221 1111211 1123567899999962 1
Q ss_pred -----------------CCchhhccCCcceEEEeCCC
Q 012418 279 -----------------TLYAPLIRDGRMEKFYWAPT 298 (464)
Q Consensus 279 -----------------~LDpALlRpGRfD~~i~iP~ 298 (464)
.|..+|+. |||..+.+|.
T Consensus 356 ~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~ 390 (499)
T TIGR00368 356 KNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPL 390 (499)
T ss_pred CcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcC
Confidence 58899987 9999999754
No 227
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.86 E-value=3.3e-06 Score=78.89 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 012418 162 LGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~el 183 (464)
|+|+|+||+|||++++.+++++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 228
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.85 E-value=6.1e-05 Score=76.43 Aligned_cols=86 Identities=20% Similarity=0.357 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCC-----CCCCC----hHHHH----HHHHHH
Q 012418 139 MDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GIN-----GNAGE----PAKLI----RQRYRE 202 (464)
Q Consensus 139 ~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~el---g~~-----~~~Ge----~~k~I----r~~F~~ 202 (464)
+-+.+++.+|.|+..+.-+.|+.|=|||++||||.+.++.||+.+ |+. .+++. -++.| .++-.+
T Consensus 90 a~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~ 169 (344)
T KOG2170|consen 90 AKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKEELKNR 169 (344)
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHHHHHHH
Confidence 334567788888888888999999999999999999999999986 333 11111 01111 122233
Q ss_pred HHHHHHhCCcEEEEeccccccc
Q 012418 203 AADIIKKGKMCCLFINDLDAGA 224 (464)
Q Consensus 203 A~~~~~~~~P~ILfIDEIDal~ 224 (464)
..+-++.++.+|.++||+|++-
T Consensus 170 v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 170 VRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHhcCCceEEechhhhcC
Confidence 3444468889999999999873
No 229
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.84 E-value=4.9e-05 Score=78.51 Aligned_cols=100 Identities=17% Similarity=0.285 Sum_probs=60.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-CCCCChHHHHHHHHH--------------HHHHHHHhCCcEEEEeccc
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-GNAGEPAKLIRQRYR--------------EAADIIKKGKMCCLFINDL 220 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-~~~Ge~~k~Ir~~F~--------------~A~~~~~~~~P~ILfIDEI 220 (464)
..+|+||.||||.|+|||+|--.....+-.+ +...-.-.-..++++ .|.+++ ..-.||.|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~--~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELA--AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHH--hcCCEEEeeee
Confidence 4578999999999999999999999988665 111111111111111 122222 23369999998
Q ss_pred cccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC-CCCCch
Q 012418 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FSTLYA 282 (464)
Q Consensus 221 Dal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~-~~~LDp 282 (464)
.- ....+.|+...|++-+= ..+|.+++|+|. |+.|++
T Consensus 140 ~V----------tDI~DAMiL~rL~~~Lf---------------~~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 140 EV----------TDIADAMILGRLLEALF---------------ARGVVLVATSNTAPDNLYK 177 (367)
T ss_pred ee----------cChHHHHHHHHHHHHHH---------------HCCcEEEEeCCCChHHhcc
Confidence 42 12344555555544332 247899999997 333433
No 230
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.83 E-value=0.00011 Score=67.81 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 012418 162 LGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~el 183 (464)
+||+||||||||++|..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999887763
No 231
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=7.9e-05 Score=75.62 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=76.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC--------------------CCCCC----hHHHHHHHHHHHHHHHHhC
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------GNAGE----PAKLIRQRYREAADIIKKG 210 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------------------~~~Ge----~~k~Ir~~F~~A~~~~~~~ 210 (464)
.-+.|..+||+||+|+||+.+|.++|..+-+. .-.|. ....+|++-+.+.-.--.+
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 44778999999999999999999999997542 00121 3445666555542211245
Q ss_pred CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcc
Q 012418 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 290 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRf 290 (464)
...|++||++|.+-.. ..|+ |+.++. +...++.+|..|+.++.|.|.++. |+
T Consensus 95 ~~kv~ii~~ad~mt~~------------AaNa-LLK~LE-------------EPp~~~~fiL~~~~~~~ll~TI~S--Rc 146 (290)
T PRK05917 95 PYKIYIIHEADRMTLD------------AISA-FLKVLE-------------DPPQHGVIILTSAKPQRLPPTIRS--RS 146 (290)
T ss_pred CceEEEEechhhcCHH------------HHHH-HHHHhh-------------cCCCCeEEEEEeCChhhCcHHHHh--cc
Confidence 6679999999976432 2233 444454 555677899999999999999887 55
Q ss_pred eEE
Q 012418 291 EKF 293 (464)
Q Consensus 291 D~~ 293 (464)
-.+
T Consensus 147 q~~ 149 (290)
T PRK05917 147 LSI 149 (290)
T ss_pred eEE
Confidence 553
No 232
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.81 E-value=0.00019 Score=73.10 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=52.5
Q ss_pred HHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------------------------CCCCC---
Q 012418 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------GNAGE--- 191 (464)
Q Consensus 144 ~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------------------------~~~Ge--- 191 (464)
+......+..|...-+.++||+|++|.|||++++..+...... ...|.
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 3444555555654444579999999999999999999764221 00010
Q ss_pred hHHHHHHHHHHHHHHHHhCCcEEEEeccccccc
Q 012418 192 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 224 (464)
Q Consensus 192 ~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~ 224 (464)
+...+......+..+++...+.+|+|||+..+.
T Consensus 126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHh
Confidence 011122334445567788999999999998763
No 233
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.80 E-value=5.8e-05 Score=82.37 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=70.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCCC-hHHHH-HHHHHHH------------HHHHHhCCcEEEEe
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAGE-PAKLI-RQRYREA------------ADIIKKGKMCCLFI 217 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~Ge-~~k~I-r~~F~~A------------~~~~~~~~P~ILfI 217 (464)
.+.-|||+|++||||+++|++|.+..... -..+. ++..+ .++|... ..++.......|||
T Consensus 234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfL 313 (526)
T TIGR02329 234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFL 313 (526)
T ss_pred CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEe
Confidence 34579999999999999999998875332 11121 22322 3455421 01122334578999
Q ss_pred ccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcce------
Q 012418 218 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME------ 291 (464)
Q Consensus 218 DEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD------ 291 (464)
||||.+-.. ++.-|++++.+.....+.+. ......|-||+|||..- ..++..|+|.
T Consensus 314 deI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~~--~~~~~dvRiIaat~~~l---~~~v~~g~fr~dL~~r 375 (526)
T TIGR02329 314 DEIGEMPLP-------------LQTRLLRVLEEREVVRVGGT--EPVPVDVRVVAATHCAL---TTAVQQGRFRRDLFYR 375 (526)
T ss_pred cChHhCCHH-------------HHHHHHHHHhcCcEEecCCC--ceeeecceEEeccCCCH---HHHhhhcchhHHHHHh
Confidence 999976432 23346666653222222222 01123567888887741 1222333333
Q ss_pred ---EEEeCCCHHHHH
Q 012418 292 ---KFYWAPTREDRI 303 (464)
Q Consensus 292 ---~~i~iP~~eeR~ 303 (464)
..+.+|...+|.
T Consensus 376 L~~~~I~lPPLReR~ 390 (526)
T TIGR02329 376 LSILRIALPPLRERP 390 (526)
T ss_pred cCCcEEeCCCchhch
Confidence 345568877773
No 234
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.80 E-value=0.00018 Score=72.56 Aligned_cols=129 Identities=19% Similarity=0.298 Sum_probs=88.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh-C--CC--------------------------------CCCCChHHHH-HHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM-G--IN--------------------------------GNAGEPAKLI-RQRYREAA 204 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el-g--~~--------------------------------~~~Ge~~k~I-r~~F~~A~ 204 (464)
.+|+|||.|+||-+.+-|+-+++ | ++ ..+|...+.+ .++..+.+
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 68999999999999999999996 2 22 4556655543 44554432
Q ss_pred HHHH-----hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCC
Q 012418 205 DIIK-----KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 279 (464)
Q Consensus 205 ~~~~-----~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~ 279 (464)
+.-. +..--|++|.|.|.+..+. ++.|.+-+. .+.+..-+|..+|..+.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~dA-------------Q~aLRRTME-------------kYs~~~RlIl~cns~Sr 169 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRDA-------------QHALRRTME-------------KYSSNCRLILVCNSTSR 169 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHHH-------------HHHHHHHHH-------------HHhcCceEEEEecCccc
Confidence 2211 2234699999999885432 133433333 34456679999999999
Q ss_pred CchhhccCCcceE-EEeCCCHHHHHHHHHhhcCCCCCCh
Q 012418 280 LYAPLIRDGRMEK-FYWAPTREDRIGVCSGIFRTDNVPK 317 (464)
Q Consensus 280 LDpALlRpGRfD~-~i~iP~~eeR~eIl~~~~~~~~v~~ 317 (464)
|-+|+.. |+-- .+..|+.++...++..+...+++..
T Consensus 170 iIepIrS--RCl~iRvpaps~eeI~~vl~~v~~kE~l~l 206 (351)
T KOG2035|consen 170 IIEPIRS--RCLFIRVPAPSDEEITSVLSKVLKKEGLQL 206 (351)
T ss_pred chhHHhh--heeEEeCCCCCHHHHHHHHHHHHHHhcccC
Confidence 9999986 4322 1334999999999999988877653
No 235
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00047 Score=70.03 Aligned_cols=146 Identities=13% Similarity=0.136 Sum_probs=88.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-------------------------CC---CCC--hHHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------GN---AGE--PAKLIRQRYREAA 204 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------------------------~~---~Ge--~~k~Ir~~F~~A~ 204 (464)
.-+.|.++||+|| .||+.+|+++|..+-.. .+ .|. ....||++-..+.
T Consensus 20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~ 97 (290)
T PRK07276 20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS 97 (290)
T ss_pred cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence 3478899999996 68999999999986432 11 122 2345666655552
Q ss_pred HHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhh
Q 012418 205 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 284 (464)
Q Consensus 205 ~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpAL 284 (464)
..-..+...|++||++|.+... ..|++| ..++ +...++.+|.+|++++.|-|-+
T Consensus 98 ~~p~~~~~kV~II~~ad~m~~~------------AaNaLL-KtLE-------------EPp~~t~~iL~t~~~~~lLpTI 151 (290)
T PRK07276 98 QSGYEGKQQVFIIKDADKMHVN------------AANSLL-KVIE-------------EPQSEIYIFLLTNDENKVLPTI 151 (290)
T ss_pred hCcccCCcEEEEeehhhhcCHH------------HHHHHH-HHhc-------------CCCCCeEEEEEECChhhCchHH
Confidence 2222556689999999976322 233434 4444 4555678999999999999998
Q ss_pred ccCCcceEEEeCCCHHHHHHHHHhhcCCCCCChh--HHHHHhcCCChhhHHH
Q 012418 285 IRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE--DIVKLVDTFPGQSIDF 334 (464)
Q Consensus 285 lRpGRfD~~i~iP~~eeR~eIl~~~~~~~~v~~~--~la~lt~gfsgadLd~ 334 (464)
+. |+-.+...|+.++..+++. ..+++.+ .+.....|-+|..+++
T Consensus 152 ~S--Rcq~i~f~~~~~~~~~~L~----~~g~~~~~a~~la~~~~s~~~A~~l 197 (290)
T PRK07276 152 KS--RTQIFHFPKNEAYLIQLLE----QKGLLKTQAELLAKLAQSTSEAEKL 197 (290)
T ss_pred HH--cceeeeCCCcHHHHHHHHH----HcCCChHHHHHHHHHCCCHHHHHHH
Confidence 87 5544333355555555554 2344432 2333333435555543
No 236
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.80 E-value=5.8e-05 Score=81.85 Aligned_cols=128 Identities=18% Similarity=0.190 Sum_probs=71.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCCC-hHHHH-HHHHHHHH-----------HHHHhCCcEEEEec
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAGE-PAKLI-RQRYREAA-----------DIIKKGKMCCLFIN 218 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~Ge-~~k~I-r~~F~~A~-----------~~~~~~~P~ILfID 218 (464)
.+.-|||+|++||||+++|++|....... -.... ++..+ .++|.... ..........||||
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ld 288 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLD 288 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEec
Confidence 45579999999999999999999886532 11111 22222 24454210 01233456789999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcce-------
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME------- 291 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD------- 291 (464)
|||.+-.. ++.-|++++++.....+.+. ......+-||+|||.. | ..++..|+|.
T Consensus 289 eI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~--l-~~~~~~~~f~~dL~~rl 350 (509)
T PRK05022 289 EIGELPLA-------------LQAKLLRVLQYGEIQRVGSD--RSLRVDVRVIAATNRD--L-REEVRAGRFRADLYHRL 350 (509)
T ss_pred ChhhCCHH-------------HHHHHHHHHhcCCEeeCCCC--cceecceEEEEecCCC--H-HHHHHcCCccHHHHhcc
Confidence 99977432 22345566653222112222 1223467899999874 1 1233334433
Q ss_pred --EEEeCCCHHHHH
Q 012418 292 --KFYWAPTREDRI 303 (464)
Q Consensus 292 --~~i~iP~~eeR~ 303 (464)
..|++|...+|.
T Consensus 351 ~~~~i~lPpLreR~ 364 (509)
T PRK05022 351 SVFPLSVPPLRERG 364 (509)
T ss_pred cccEeeCCCchhch
Confidence 235568887773
No 237
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.79 E-value=6.3e-05 Score=84.32 Aligned_cols=128 Identities=17% Similarity=0.230 Sum_probs=69.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC-------CCCCChHHHH-HHHHHHH-----------HHHHHhCCcEEEEec
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN-------GNAGEPAKLI-RQRYREA-----------ADIIKKGKMCCLFIN 218 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------~~~Ge~~k~I-r~~F~~A-----------~~~~~~~~P~ILfID 218 (464)
...-|||+|++|||||++|++|....... .-..-+...+ .++|... ...+.......||||
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ld 477 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 477 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEe
Confidence 34579999999999999999999876433 0011112221 2233311 112234456799999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceE------
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK------ 292 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~------ 292 (464)
|||.+-.. ++.-|++++++.....+.+. .....++-||+|||.. + ..+...|+|..
T Consensus 478 ei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~--l-~~~~~~~~f~~~L~~~l 539 (686)
T PRK15429 478 EVGDMPLE-------------LQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAATNRD--L-KKMVADREFRSDLYYRL 539 (686)
T ss_pred chhhCCHH-------------HHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeCCCC--H-HHHHHcCcccHHHHhcc
Confidence 99976332 22345555552211111221 1123567899999874 1 12222333332
Q ss_pred ---EEeCCCHHHHH
Q 012418 293 ---FYWAPTREDRI 303 (464)
Q Consensus 293 ---~i~iP~~eeR~ 303 (464)
.|.+|...+|.
T Consensus 540 ~~~~i~lPpLreR~ 553 (686)
T PRK15429 540 NVFPIHLPPLRERP 553 (686)
T ss_pred CeeEEeCCChhhhH
Confidence 35568887773
No 238
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.76 E-value=0.00027 Score=74.62 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=59.7
Q ss_pred hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC-CCCchhhccC
Q 012418 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-STLYAPLIRD 287 (464)
Q Consensus 209 ~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~-~~LDpALlRp 287 (464)
+....||+|||+-.+. +++++.+|--+...-+.|+.+|... ....++++|+|+|-. ..|-|.|+-
T Consensus 142 ~AnRGIlYvDEvnlL~------------d~lvd~LLd~aaeG~n~vereGisi-~hpa~fvligTmNPEeGeLrpqLlD- 207 (423)
T COG1239 142 RANRGILYVDEVNLLD------------DHLVDALLDVAAEGVNDVEREGISI-RHPARFLLIGTMNPEEGELRPQLLD- 207 (423)
T ss_pred hccCCEEEEecccccc------------HHHHHHHHHHHHhCCceeeeCceee-ccCccEEEEeecCccccccchhhHh-
Confidence 4456799999996442 2444544433333335677788732 223567899999975 467888886
Q ss_pred CcceEEEeC---CCHHHHHHHHHhhcCCC
Q 012418 288 GRMEKFYWA---PTREDRIGVCSGIFRTD 313 (464)
Q Consensus 288 GRfD~~i~i---P~~eeR~eIl~~~~~~~ 313 (464)
||...+.+ .+.++|.+|++.-..-+
T Consensus 208 -Rfg~~v~~~~~~~~~~rv~Ii~r~~~f~ 235 (423)
T COG1239 208 -RFGLEVDTHYPLDLEERVEIIRRRLAFE 235 (423)
T ss_pred -hhcceeeccCCCCHHHHHHHHHHHHHhh
Confidence 88888775 68899999977655433
No 239
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.74 E-value=2.5e-05 Score=89.28 Aligned_cols=144 Identities=18% Similarity=0.262 Sum_probs=87.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC---CCCCC--hHHHHHHHHHHHH--------------HHHHhCCcEEEEecccc
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN---GNAGE--PAKLIRQRYREAA--------------DIIKKGKMCCLFINDLD 221 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~---~~~Ge--~~k~Ir~~F~~A~--------------~~~~~~~P~ILfIDEID 221 (464)
.+|++||||.|||+.+.++|.++|.. .+... +.+.+.+.+..+. .......--||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 47999999999999999999999977 11111 2222223222210 00011112399999999
Q ss_pred cccc-CCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCch-hhccCCcceEEEeCCCH
Q 012418 222 AGAG-RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAPTR 299 (464)
Q Consensus 222 al~~-~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDp-ALlRpGRfD~~i~iP~~ 299 (464)
.+.+ .|++. .. |..++ ....+|||+|+|+.+.... ++.|.+ +|..+.-|+.
T Consensus 439 ~~~~~dRg~v-------~~----l~~l~---------------~ks~~Piv~~cndr~~p~sr~~~~~~-~~l~f~kP~~ 491 (871)
T KOG1968|consen 439 GMFGEDRGGV-------SK----LSSLC---------------KKSSRPLVCTCNDRNLPKSRALSRAC-SDLRFSKPSS 491 (871)
T ss_pred cccchhhhhH-------HH----HHHHH---------------HhccCCeEEEecCCCCccccchhhhc-ceeeecCCcH
Confidence 8876 23311 12 22222 1456799999999888776 566544 6666666999
Q ss_pred HHHHHHHHhhcCCC--CCChhHHHHHhcCCChhhH
Q 012418 300 EDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSI 332 (464)
Q Consensus 300 eeR~eIl~~~~~~~--~v~~~~la~lt~gfsgadL 332 (464)
+.+..-+..+...+ .++.+.|.+++... ++||
T Consensus 492 ~~i~~ri~si~~se~~ki~~~~l~~~s~~~-~~Di 525 (871)
T KOG1968|consen 492 ELIRSRIMSICKSEGIKISDDVLEEISKLS-GGDI 525 (871)
T ss_pred HHHHhhhhhhhcccceecCcHHHHHHHHhc-ccCH
Confidence 88876665555444 35555555555443 5565
No 240
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.72 E-value=0.0002 Score=69.42 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=49.2
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCC-----------------CCCC-----------------------
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GIN-----------------GNAG----------------------- 190 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el---g~~-----------------~~~G----------------------- 190 (464)
.|++....++++||||+|||++|..++.+. |.. ...|
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 388888999999999999999999997653 211 0000
Q ss_pred ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccc
Q 012418 191 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 224 (464)
Q Consensus 191 e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~ 224 (464)
.......+++....+.++..+|.+|+||++-.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0011124455555566667789999999998764
No 241
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.72 E-value=0.00017 Score=78.16 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=31.1
Q ss_pred HHhhhh-----CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 147 TKNFLN-----LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 147 ~Kn~l~-----~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
++.||+ .+++ ..+.+||+||+|||||+..+.+|+++|+.
T Consensus 94 Vk~WL~~~~~~~~~l-~~~iLLltGPsGcGKSTtvkvLskelg~~ 137 (634)
T KOG1970|consen 94 VKQWLKQVAEFTPKL-GSRILLLTGPSGCGKSTTVKVLSKELGYQ 137 (634)
T ss_pred HHHHHHHHHHhccCC-CceEEEEeCCCCCCchhHHHHHHHhhCce
Confidence 456665 3333 33689999999999999999999999876
No 242
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.70 E-value=8.8e-05 Score=81.17 Aligned_cols=128 Identities=17% Similarity=0.270 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH--------hCC---C---CCCCC-hHHHH-HHHHHHHH------------HHHHh
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK--------MGI---N---GNAGE-PAKLI-RQRYREAA------------DIIKK 209 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e--------lg~---~---~~~Ge-~~k~I-r~~F~~A~------------~~~~~ 209 (464)
.+.-|||+|++||||+++|++|.+. ... + -..+. ++..+ .++|.... .++..
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~ 320 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 320 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhc
Confidence 3457999999999999999999887 211 1 11111 22322 34554210 11223
Q ss_pred CCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCc
Q 012418 210 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289 (464)
Q Consensus 210 ~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGR 289 (464)
.....||||||+.+-.. ++.-|++++++.....+.+. .....+|-||+|||.. |. .+...|+
T Consensus 321 A~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~~r~G~~--~~~~~dvRiIaat~~~--L~-~~v~~g~ 382 (538)
T PRK15424 321 AHGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEVTRVGGH--QPVPVDVRVISATHCD--LE-EDVRQGR 382 (538)
T ss_pred cCCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeEEecCCC--ceeccceEEEEecCCC--HH-HHHhccc
Confidence 34568999999976432 23346666653222222222 0112456789998874 22 3334455
Q ss_pred ceE---------EEeCCCHHHHH
Q 012418 290 MEK---------FYWAPTREDRI 303 (464)
Q Consensus 290 fD~---------~i~iP~~eeR~ 303 (464)
|.. .|.+|...+|.
T Consensus 383 Fr~dL~yrL~~~~I~lPPLReR~ 405 (538)
T PRK15424 383 FRRDLFYRLSILRLQLPPLRERV 405 (538)
T ss_pred chHHHHHHhcCCeecCCChhhch
Confidence 542 34458877773
No 243
>PHA02624 large T antigen; Provisional
Probab=97.70 E-value=0.00017 Score=79.33 Aligned_cols=140 Identities=16% Similarity=0.074 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh-CCCCCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCc
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM-GINGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 232 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el-g~~~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~ 232 (464)
.|++..+.+|||||||||||++|.++++.| |..-.+..+...+ -|... -...--+.+|||+-.-.........
T Consensus 426 ~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks--~FwL~----pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 426 ENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL--NFELG----CAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh--HHHhh----hhhhceEEEeeeccccccccccCCc
Confidence 477777899999999999999999999999 5542244333222 24332 3333468899998543221110111
Q ss_pred cchhhHHHHHHHHhhhcCCCcccCCCcccc-CCCCCceEEEEeCCCCCCchhhccCCcceEEEeC-CCHHHHHH
Q 012418 233 YTVNNQMVNATLMNIADNPTNVQLPGMYNQ-EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIG 304 (464)
Q Consensus 233 ~~~~~~~v~~~L~~llD~~~~v~ldG~~~~-~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i-P~~eeR~e 304 (464)
+...+.. .-|.+.+|..=.|.+|-.... ....--|.|+|||. ..||.-|.- ||-+.+.+ |..--+..
T Consensus 500 G~~~dNl--~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~k~~l~~s 568 (647)
T PHA02624 500 GQGMNNL--DNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKPKPYLKKS 568 (647)
T ss_pred ccccchh--hHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccccHHHHHH
Confidence 1111111 124444453223333322111 11122389999997 456666654 88888876 55544433
No 244
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.70 E-value=2.3e-05 Score=80.69 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=68.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC--------CCCCChHHHHHHH-----HHHHHHHHHhCCcEEEEecccccc
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN--------GNAGEPAKLIRQR-----YREAADIIKKGKMCCLFINDLDAG 223 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------~~~Ge~~k~Ir~~-----F~~A~~~~~~~~P~ILfIDEIDal 223 (464)
+-..-|||.|.||||||.|.+.+++-.... ...|-+....++- .-+| ..+-.....|++|||+|++
T Consensus 55 r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~lea-Galvlad~GiccIDe~dk~ 133 (331)
T PF00493_consen 55 RGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEA-GALVLADGGICCIDEFDKM 133 (331)
T ss_dssp --S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE--HHHHCTTSEEEECTTTT-
T ss_pred ccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeC-CchhcccCceeeecccccc
Confidence 344689999999999999999887553211 1111111000000 0000 0112334579999999986
Q ss_pred ccCCCCCCccchhhHHHHHHHHhhhcCCCcccC--CCccccCCCCCceEEEEeCCCC-------------CCchhhccCC
Q 012418 224 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL--PGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRDG 288 (464)
Q Consensus 224 ~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~l--dG~~~~~~~~~V~VIaTTN~~~-------------~LDpALlRpG 288 (464)
-... ...|.+.++.++. .+ .|. ...-..+.-|++|+|... .|+++|+.
T Consensus 134 ~~~~-------------~~~l~eaMEqq~i-si~kagi-~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS-- 196 (331)
T PF00493_consen 134 KEDD-------------RDALHEAMEQQTI-SIAKAGI-VTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS-- 196 (331)
T ss_dssp -CHH-------------HHHHHHHHHCSCE-EECTSSS-EEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--
T ss_pred cchH-------------HHHHHHHHHcCee-ccchhhh-cccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--
Confidence 4321 1335555553222 22 222 112235667999999877 58999997
Q ss_pred cceEEEeC---CCHHHHHHHHHhhcC
Q 012418 289 RMEKFYWA---PTREDRIGVCSGIFR 311 (464)
Q Consensus 289 RfD~~i~i---P~~eeR~eIl~~~~~ 311 (464)
|||.++.+ |+.+.-..|...++.
T Consensus 197 RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 197 RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred hcCEEEEeccccccccccccceEEEe
Confidence 99998886 776655666555443
No 245
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0002 Score=81.88 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=64.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----------------------CCC-CCCCChHHHHHHHHHHHHHHHHhCCcE
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------------------GIN-GNAGEPAKLIRQRYREAADIIKKGKMC 213 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el----------------------g~~-~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ 213 (464)
+++.-+||.||.|+|||-||+++|..+ |.+ .|.|..+.- ++.+ .+++...|
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~Lte----avrrrP~s 662 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTE----AVKRRPYS 662 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHH----HHhcCCce
Confidence 356888999999999999999999885 111 455554432 2233 23667779
Q ss_pred EEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCC
Q 012418 214 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 279 (464)
Q Consensus 214 ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~ 279 (464)
||||||||+--. .+...|++++|.=...--.|. ..+..+++||+|+|.-..
T Consensus 663 VVLfdeIEkAh~-------------~v~n~llq~lD~GrltDs~Gr--~Vd~kN~I~IMTsn~~~~ 713 (898)
T KOG1051|consen 663 VVLFEEIEKAHP-------------DVLNILLQLLDRGRLTDSHGR--EVDFKNAIFIMTSNVGSS 713 (898)
T ss_pred EEEEechhhcCH-------------HHHHHHHHHHhcCccccCCCc--EeeccceEEEEecccchH
Confidence 999999996322 233445566662211111121 234578899999998433
No 246
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.63 E-value=0.00024 Score=73.09 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=48.5
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----C--------------CCCChH--------HHHHHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----G--------------NAGEPA--------KLIRQRYREAADII 207 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----~--------------~~Ge~~--------k~Ir~~F~~A~~~~ 207 (464)
.|++.-..++|+||||||||+||-.++.+.-.. - ..|... ....+.+..+..++
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 478888899999999999999988877654211 0 011100 01223334444455
Q ss_pred HhCCcEEEEeccccccccC
Q 012418 208 KKGKMCCLFINDLDAGAGR 226 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~~ 226 (464)
+...+.+|+||-+-++..+
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 6788999999999988754
No 247
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.62 E-value=0.00022 Score=68.57 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=26.9
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|++....++|+||||+|||++|..+|.+.
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478888899999999999999999999865
No 248
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.61 E-value=6e-05 Score=81.50 Aligned_cols=154 Identities=19% Similarity=0.315 Sum_probs=93.0
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCC-CChH
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------GNA-GEPA 193 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~-Ge~~ 193 (464)
..|+|+++++. .|.+.. +...+|.+ .+.+..|||.|..||||-++|++|-+..... -++ --++
T Consensus 240 a~y~f~~Iig~---S~~m~~--~~~~akr~-----A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGE---SPAMLR--VLELAKRI-----AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccC---CHHHHH--HHHHHHhh-----cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 35789999986 244332 33444444 4667789999999999999999998876543 122 2344
Q ss_pred HHH-HHHHHHH---HHHHH---------hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCcc
Q 012418 194 KLI-RQRYREA---ADIIK---------KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 260 (464)
Q Consensus 194 k~I-r~~F~~A---~~~~~---------~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~ 260 (464)
.++ .++|... +.=+. .....-||+|||..+- ...+.-|++++..-.-..+.|.
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp-------------l~LQaKLLRVLQEkei~rvG~t- 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP-------------LPLQAKLLRVLQEKEIERVGGT- 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCC-------------HHHHHHHHHHHhhceEEecCCC-
Confidence 444 3566542 11111 1234579999995431 2344557777764444444444
Q ss_pred ccCCCCCceEEEEeCCCCCCchhhccCCcceE--EEe-------CCCHHHH
Q 012418 261 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYW-------APTREDR 302 (464)
Q Consensus 261 ~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~--~i~-------iP~~eeR 302 (464)
....-.|-||+|||+. ..-++..|||-+ .|. +|...+|
T Consensus 376 -~~~~vDVRIIAATN~n---L~~~i~~G~FReDLYYRLNV~~i~iPPLReR 422 (560)
T COG3829 376 -KPIPVDVRIIAATNRN---LEKMIAEGTFREDLYYRLNVIPITIPPLRER 422 (560)
T ss_pred -CceeeEEEEEeccCcC---HHHHHhcCcchhhheeeeceeeecCCCcccC
Confidence 1223568899999994 344666677643 333 2766666
No 249
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.00051 Score=68.76 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=73.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------------------CC---CC--ChHHHHHHHHHHHHHHH-
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------GN---AG--EPAKLIRQRYREAADII- 207 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------------------~~---~G--e~~k~Ir~~F~~A~~~~- 207 (464)
.+|..+||+||+|+||..+|.++|..+-.. .+ .+ -....+|++-+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 468899999999999999999999986432 11 11 12234454444331111
Q ss_pred HhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccC
Q 012418 208 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRp 287 (464)
..+...|++|+++|.+-. ...|++| ..++ +...++.+|.+|++++.|.|-++.
T Consensus 85 e~~~~KV~II~~ae~m~~------------~AaNaLL-K~LE-------------EPp~~t~fiLit~~~~~lLpTI~S- 137 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK------------QSANSLL-KLIE-------------EPPKNTYGIFTTRNENNILNTILS- 137 (261)
T ss_pred hcCCCEEEEeccHhhhCH------------HHHHHHH-Hhhc-------------CCCCCeEEEEEECChHhCchHhhh-
Confidence 123467999999986532 2234444 4444 556677899999999999999987
Q ss_pred CcceEEEeCCCH
Q 012418 288 GRMEKFYWAPTR 299 (464)
Q Consensus 288 GRfD~~i~iP~~ 299 (464)
|+-. +.+|..
T Consensus 138 -RCq~-~~~~~~ 147 (261)
T PRK05818 138 -RCVQ-YVVLSK 147 (261)
T ss_pred -heee-eecCCh
Confidence 6655 334443
No 250
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.59 E-value=6.3e-05 Score=67.20 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=38.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC--C-CCCChHHHHHHHHHHHHHHHHhCCcEEEEecccccccc
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN--G-NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~--~-~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~ 225 (464)
..-|||+|+|||||+++|++|....+.. . ..-.....-.+.+ .......|||+|||.+-.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l-------~~a~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELL-------EQAKGGTLYLKNIDRLSP 83 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHH-------HHCTTSEEEEECGCCS-H
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHH-------HHcCCCEEEECChHHCCH
Confidence 3458999999999999999999876543 1 1111111002222 334778999999997744
No 251
>PRK13695 putative NTPase; Provisional
Probab=97.57 E-value=0.00037 Score=64.50 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el 183 (464)
-++|.|+||+|||+|++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998875
No 252
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.57 E-value=7.6e-05 Score=67.69 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.++..|+|+||||||||++|+.+|+.+|++
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~ 31 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYD 31 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 467799999999999999999999999987
No 253
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.56 E-value=0.00044 Score=66.82 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
++.++|+||.|+|||++.+.|+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999983
No 254
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.54 E-value=6.3e-05 Score=64.69 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|+|.||||+|||++|+.+|+.+|+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~ 26 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFP 26 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 37899999999999999999988754
No 255
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.50 E-value=0.00052 Score=65.51 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=27.6
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.|+.....++|+||||+|||++|..+|.++.
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3788888899999999999999999998863
No 256
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.50 E-value=0.00014 Score=75.76 Aligned_cols=28 Identities=29% Similarity=0.199 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
..++|+|+||||||||+||+++|+.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4589999999999999999999999976
No 257
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.0017 Score=69.49 Aligned_cols=163 Identities=16% Similarity=0.195 Sum_probs=102.5
Q ss_pred HHHHHhhhhC-CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHH---------
Q 012418 144 VHITKNFLNL-PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYRE--------- 202 (464)
Q Consensus 144 ~~i~Kn~l~~-~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~--------- 202 (464)
..++++|... ...+.+..+.+.|-||||||.+..-+-..+... ...++.......+|..
T Consensus 159 ~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~ 238 (529)
T KOG2227|consen 159 MDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPG 238 (529)
T ss_pred HHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCc
Confidence 5667777764 356677889999999999999888776654322 1223322222222221
Q ss_pred --------HHHHHHhC-CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEE
Q 012418 203 --------AADIIKKG-KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT 273 (464)
Q Consensus 203 --------A~~~~~~~-~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaT 273 (464)
...+.... .|-||++||+|-+..+.. +.|+.+. .|-.-...++++|+-
T Consensus 239 ~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-------------~vLy~lF----------ewp~lp~sr~iLiGi 295 (529)
T KOG2227|consen 239 TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-------------TVLYTLF----------EWPKLPNSRIILIGI 295 (529)
T ss_pred hhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-------------ceeeeeh----------hcccCCcceeeeeee
Confidence 11222333 488999999999985533 1132222 344567788999999
Q ss_pred eCCCCCCchhhccCCcceEEE-----eC--CCHHHHHHHHHhhcCCCCCC------hhHHHHHhcCCChh
Q 012418 274 GNDFSTLYAPLIRDGRMEKFY-----WA--PTREDRIGVCSGIFRTDNVP------KEDIVKLVDTFPGQ 330 (464)
Q Consensus 274 TN~~~~LDpALlRpGRfD~~i-----~i--P~~eeR~eIl~~~~~~~~v~------~~~la~lt~gfsga 330 (464)
+|..+.=|..|.|- +.|+.+ .+ .+.++..+|++..+...... .+-+|+.+.+-||.
T Consensus 296 ANslDlTdR~LprL-~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGD 364 (529)
T KOG2227|consen 296 ANSLDLTDRFLPRL-NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGD 364 (529)
T ss_pred hhhhhHHHHHhhhh-hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchh
Confidence 99999988888752 343332 22 58999999988776543222 33566677777763
No 258
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.48 E-value=0.00022 Score=74.81 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
-.+|+||.|||-.|||||+|--....++
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 3469999999999999999999988553
No 259
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0013 Score=67.01 Aligned_cols=144 Identities=10% Similarity=0.102 Sum_probs=86.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC----------C-----CC--CChH--HHHHHHHHHHHHHH-HhCCcEEEE
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN----------G-----NA--GEPA--KLIRQRYREAADII-KKGKMCCLF 216 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------~-----~~--Ge~~--k~Ir~~F~~A~~~~-~~~~P~ILf 216 (464)
+.+...||+|+.|+||+.+++.+++.+.+. . .- |... ..|+++.+...-.. ..+...|++
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEE
Confidence 567899999999999999999999998321 0 11 3222 24444444331000 014778999
Q ss_pred eccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC
Q 012418 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 296 (464)
Q Consensus 217 IDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i 296 (464)
||++|.+.. ...|. |+..+. +....+.+|.+|+.++.|.|.++. |+-. +.+
T Consensus 96 I~~~e~m~~------------~a~Na-LLK~LE-------------EPp~~t~~il~~~~~~kll~TI~S--Rc~~-~~f 146 (299)
T PRK07132 96 IKNIEKTSN------------SLLNA-LLKTIE-------------EPPKDTYFLLTTKNINKVLPTIVS--RCQV-FNV 146 (299)
T ss_pred EecccccCH------------HHHHH-HHHHhh-------------CCCCCeEEEEEeCChHhChHHHHh--CeEE-EEC
Confidence 999875421 22233 444444 444556788888888999999877 4444 444
Q ss_pred --CCHHHHHHHHHhhcCCCCCChh---HHHHHhcCCChhhHHH
Q 012418 297 --PTREDRIGVCSGIFRTDNVPKE---DIVKLVDTFPGQSIDF 334 (464)
Q Consensus 297 --P~~eeR~eIl~~~~~~~~v~~~---~la~lt~gfsgadLd~ 334 (464)
|+.++..+.+... +++.+ .++.++.+ .|..+.+
T Consensus 147 ~~l~~~~l~~~l~~~----~~~~~~a~~~a~~~~~-~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSK----NKEKEYNWFYAYIFSN-FEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHc----CCChhHHHHHHHHcCC-HHHHHHH
Confidence 6677776665442 23323 44445555 5555543
No 260
>PRK15115 response regulator GlrR; Provisional
Probab=97.47 E-value=0.00014 Score=76.75 Aligned_cols=127 Identities=15% Similarity=0.211 Sum_probs=72.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC-------CCCCChHHHH-HHHHHHHH-----------HHHHhCCcEEEEecc
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN-------GNAGEPAKLI-RQRYREAA-----------DIIKKGKMCCLFIND 219 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~-------~~~Ge~~k~I-r~~F~~A~-----------~~~~~~~P~ILfIDE 219 (464)
...++|+|++|||||++|+++....... ....-+...+ ..+|..+. ..........|||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 3468999999999999999998876532 1111122332 23443220 012234457999999
Q ss_pred ccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcc---------
Q 012418 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM--------- 290 (464)
Q Consensus 220 IDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRf--------- 290 (464)
||.+-.. .+..|++.+++.....+.+. .....++.||+||+.. ++. ++..|+|
T Consensus 237 i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~--~~~~~~~rii~~~~~~--l~~-~~~~~~f~~~l~~~l~ 298 (444)
T PRK15115 237 IGDMPAP-------------LQVKLLRVLQERKVRPLGSN--RDIDIDVRIISATHRD--LPK-AMARGEFREDLYYRLN 298 (444)
T ss_pred cccCCHH-------------HHHHHHHHHhhCCEEeCCCC--ceeeeeEEEEEeCCCC--HHH-HHHcCCccHHHHHhhc
Confidence 9976433 22345555553222112222 0122467899999863 444 3445777
Q ss_pred eEEEeCCCHHHHH
Q 012418 291 EKFYWAPTREDRI 303 (464)
Q Consensus 291 D~~i~iP~~eeR~ 303 (464)
...|.+|...+|.
T Consensus 299 ~~~i~lPpLr~R~ 311 (444)
T PRK15115 299 VVSLKIPALAERT 311 (444)
T ss_pred eeeecCCChHhcc
Confidence 3445568888883
No 261
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.47 E-value=0.0002 Score=75.65 Aligned_cols=126 Identities=17% Similarity=0.280 Sum_probs=69.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC-------CCCCChHHHH-HHHHHHHH-----------HHHHhCCcEEEEecc
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN-------GNAGEPAKLI-RQRYREAA-----------DIIKKGKMCCLFIND 219 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~-------~~~Ge~~k~I-r~~F~~A~-----------~~~~~~~P~ILfIDE 219 (464)
..-+|++|++||||+++|+++....... ....-+...+ ..+|.... ..+......+|||||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~ 245 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDE 245 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEec
Confidence 3469999999999999999998875422 1111122222 33444210 011233457999999
Q ss_pred ccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceE-------
Q 012418 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK------- 292 (464)
Q Consensus 220 IDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~------- 292 (464)
||.+-.. +...|++++++.......+. .....++.||+|||.. + ..+.+.|+|..
T Consensus 246 i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~--l-~~~~~~g~~~~~l~~~l~ 307 (457)
T PRK11361 246 IGEMPLV-------------LQAKLLRILQEREFERIGGH--QTIKVDIRIIAATNRD--L-QAMVKEGTFREDLFYRLN 307 (457)
T ss_pred hhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeeceEEEEeCCCC--H-HHHHHcCCchHHHHHHhc
Confidence 9976433 23446666653221111221 1122457899999863 1 23445555543
Q ss_pred --EEeCCCHHHH
Q 012418 293 --FYWAPTREDR 302 (464)
Q Consensus 293 --~i~iP~~eeR 302 (464)
.|.+|...+|
T Consensus 308 ~~~i~~ppLreR 319 (457)
T PRK11361 308 VIHLILPPLRDR 319 (457)
T ss_pred cceecCCChhhc
Confidence 2335777776
No 262
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.46 E-value=0.00026 Score=70.29 Aligned_cols=29 Identities=10% Similarity=-0.156 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
...--++|+||+|||||+|++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34457899999999999999999998754
No 263
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.44 E-value=0.00071 Score=69.80 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=48.5
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCC---------------CCCCChHH--------HHHHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GIN---------------GNAGEPAK--------LIRQRYREAADII 207 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el---g~~---------------~~~Ge~~k--------~Ir~~F~~A~~~~ 207 (464)
-|++.-+.++|+||||||||+||-.++.+. |-. ...|.... ...+.+..+..++
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 378888899999999999999999887654 211 01111000 0122333344455
Q ss_pred HhCCcEEEEeccccccccC
Q 012418 208 KKGKMCCLFINDLDAGAGR 226 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~~ 226 (464)
+...+.+|+||-+-++.++
T Consensus 130 ~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred hccCCCEEEEcchHhhccc
Confidence 6788999999999988754
No 264
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.44 E-value=9e-05 Score=82.24 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=36.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC---------------------CCCCChHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN---------------------GNAGEPAKLIRQRYREA 203 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~---------------------~~~Ge~~k~Ir~~F~~A 203 (464)
+.++|+||||||||++|+++++.++.+ .+.|...+.++..|..|
T Consensus 38 ~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 102 (608)
T TIGR00764 38 RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVPAGEGREIVEDYKKKA 102 (608)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHHHhhchHHHHHHHHHh
Confidence 488999999999999999999998533 34566777788888877
No 265
>PRK08118 topology modulation protein; Reviewed
Probab=97.39 E-value=0.00043 Score=64.38 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=24.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|++.||||+|||++|+.+++.++++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 58899999999999999999999987
No 266
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.38 E-value=0.00057 Score=64.76 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
++.-.++|.||+|||||+|-|.||.-.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 444578999999999999999999763
No 267
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.38 E-value=0.00025 Score=67.51 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=38.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC------------CCCC-ChHHHH--------HHHHHHHHHHHHhCCcEEEEecc
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN------------GNAG-EPAKLI--------RQRYREAADIIKKGKMCCLFIND 219 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~G-e~~k~I--------r~~F~~A~~~~~~~~P~ILfIDE 219 (464)
.++|.||+|+|||++.++++.++..+ .+.- .....+ ...|..+...+-...|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 36889999999999999999887532 0000 000001 12344443343466799999999
Q ss_pred c
Q 012418 220 L 220 (464)
Q Consensus 220 I 220 (464)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 268
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.38 E-value=0.00049 Score=65.85 Aligned_cols=23 Identities=22% Similarity=-0.005 Sum_probs=21.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.++|.||.|+|||+|.+.|+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 68999999999999999999954
No 269
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.36 E-value=0.0012 Score=64.97 Aligned_cols=135 Identities=15% Similarity=0.064 Sum_probs=75.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC-----CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCc
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN-----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 232 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~ 232 (464)
...|-.++||+|||||..++.+|+.+|.. -..+-....+.++|.=+ - ...+-+.|||++.+-.. .
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~----~-~~GaW~cfdefnrl~~~-----v 100 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGL----A-QSGAWLCFDEFNRLSEE-----V 100 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHH----H-HHT-EEEEETCCCSSHH-----H
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHH----h-hcCchhhhhhhhhhhHH-----H
Confidence 34577899999999999999999999988 23344455666666543 1 22579999999866321 1
Q ss_pred cchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeC----CCCCCchhhccCCcceEEEeC--CCHHHHHHHH
Q 012418 233 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 306 (464)
Q Consensus 233 ~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN----~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl 306 (464)
-.+-.+.+......+..+...+.+.|.-... ++..-+.+|.| ....||+.|.... +-+.+ ||.+...++.
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l-~~~~~iFiT~np~y~gr~~LP~nLk~lF---Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKL-NPNCGIFITMNPGYAGRSELPENLKALF---RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE---TT-EEEEEE-B-CCCC--S-HHHCTTE---EEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEE-ccceeEEEeeccccCCcccCCHhHHHHh---heeEEeCCCHHHHHHHH
Confidence 1222233444333444444445555542221 23445667777 4568999887533 34543 9988887774
No 270
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.36 E-value=0.00083 Score=70.47 Aligned_cols=71 Identities=21% Similarity=0.173 Sum_probs=47.3
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----CC-CCC-hHHHHHHHH------------------HHHHHHHHhC
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----GN-AGE-PAKLIRQRY------------------REAADIIKKG 210 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----~~-~Ge-~~k~Ir~~F------------------~~A~~~~~~~ 210 (464)
|+.+...+||+|+||+|||+|+..+|..+... -| .++ +...++.+. ....+.++..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 67777899999999999999999999775322 11 122 222222111 1222334567
Q ss_pred CcEEEEecccccccc
Q 012418 211 KMCCLFINDLDAGAG 225 (464)
Q Consensus 211 ~P~ILfIDEIDal~~ 225 (464)
+|.+|+||+|-.+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 899999999988754
No 271
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.35 E-value=0.00047 Score=69.32 Aligned_cols=26 Identities=15% Similarity=-0.070 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
+.++|.||||+|||+|.++++..+.-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 68999999999999999999988753
No 272
>PRK13947 shikimate kinase; Provisional
Probab=97.35 E-value=0.0006 Score=62.33 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=24.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+|.|+||||||++|+.+|+.+|++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999999997
No 273
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.34 E-value=0.00017 Score=70.42 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.|.-+||||+||+|||++|+.++..
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~ 35 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK 35 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC
Confidence 34677999999999999999999854
No 274
>PRK09354 recA recombinase A; Provisional
Probab=97.33 E-value=0.00045 Score=71.85 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=47.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCC---------------CCCCChH--------HHHHHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GIN---------------GNAGEPA--------KLIRQRYREAADII 207 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el---g~~---------------~~~Ge~~--------k~Ir~~F~~A~~~~ 207 (464)
.|++.-+.++|+||||||||+||--++.+. |-. ...|... ....+.+..+..++
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 378888899999999999999999877653 111 0011000 01223334444555
Q ss_pred HhCCcEEEEecccccccc
Q 012418 208 KKGKMCCLFINDLDAGAG 225 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~ 225 (464)
+...+.+|+||=+-++..
T Consensus 135 ~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVP 152 (349)
T ss_pred hcCCCCEEEEeChhhhcc
Confidence 778899999999998875
No 275
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.31 E-value=0.0003 Score=74.75 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCC-CChHHH-HHHHHHHHH-----------HHHHhCCcEEEEec
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------GNA-GEPAKL-IRQRYREAA-----------DIIKKGKMCCLFIN 218 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~-Ge~~k~-Ir~~F~~A~-----------~~~~~~~P~ILfID 218 (464)
...-+||+|++|||||++|+++....... -.. .-+... -..+|.... ..+.......||||
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~ 239 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEe
Confidence 34569999999999999999999876432 111 112222 234444210 01123345689999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC-------CCCchhhccCCcc-
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIRDGRM- 290 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~-------~~LDpALlRpGRf- 290 (464)
|||.+... ++..|++++++.....+.+.. .....+-||+||+.. ..+.+.|.. |+
T Consensus 240 ~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~--~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~ 302 (469)
T PRK10923 240 EIGDMPLD-------------VQTRLLRVLADGQFYRVGGYA--PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN 302 (469)
T ss_pred ccccCCHH-------------HHHHHHHHHhcCcEEeCCCCC--eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc
Confidence 99976433 223466666533222222220 112456789988763 234455554 44
Q ss_pred eEEEeCCCHHHHH
Q 012418 291 EKFYWAPTREDRI 303 (464)
Q Consensus 291 D~~i~iP~~eeR~ 303 (464)
...|.+|...+|.
T Consensus 303 ~~~i~~PpLreR~ 315 (469)
T PRK10923 303 VIRVHLPPLRERR 315 (469)
T ss_pred ceeecCCCcccch
Confidence 3455577766663
No 276
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.31 E-value=0.00098 Score=71.47 Aligned_cols=72 Identities=22% Similarity=0.173 Sum_probs=47.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhC---CC-CC-CC-ChHHHHHHH------------------HHHHHHHHHhC
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG---IN-GN-AG-EPAKLIRQR------------------YREAADIIKKG 210 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg---~~-~~-~G-e~~k~Ir~~------------------F~~A~~~~~~~ 210 (464)
|+.+...+||+||||+|||+|+..+|..+. .+ -| .+ ++...++.+ +....+.++..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 788888999999999999999999998763 22 11 11 122222111 12222344567
Q ss_pred CcEEEEeccccccccC
Q 012418 211 KMCCLFINDLDAGAGR 226 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~ 226 (464)
+|.+|+||+|-.+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999887543
No 277
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.27 E-value=0.0005 Score=60.60 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|++.||||+|||++|+.++..++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~ 26 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAV 26 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCE
Confidence 7899999999999999999998754
No 278
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.26 E-value=0.001 Score=63.89 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=26.6
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|++....+.|+||||||||++|..+|...
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 478888999999999999999999998663
No 279
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.25 E-value=0.00058 Score=72.09 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
-.||+||||+|||+|++.|++.+..
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Confidence 3578999999999999999998754
No 280
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.25 E-value=0.01 Score=63.40 Aligned_cols=65 Identities=22% Similarity=0.176 Sum_probs=42.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCC-CCCCCChHHHHHHHHHHHHHHHH-hCCcEEEEecccccc
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI-NGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAG 223 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~-~~~~Ge~~k~Ir~~F~~A~~~~~-~~~P~ILfIDEIDal 223 (464)
+.....+++.||||||||+++.+++.+.-+ ....-....++-++-. ..+. -.+..+|+|||+.-+
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~~---~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIST---RQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHHH---HHHhhhccCCEEEEEcCCCC
Confidence 455578999999999999999999887211 1122223333322222 2222 567889999999764
No 281
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.25 E-value=0.0014 Score=62.66 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|++....+.|+||||+|||++|..+|...
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 478888899999999999999999998764
No 282
>PLN02200 adenylate kinase family protein
Probab=97.24 E-value=0.0003 Score=69.13 Aligned_cols=33 Identities=36% Similarity=0.691 Sum_probs=30.1
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
++.+.|..|+|.||||+|||++|+.+|.++|+.
T Consensus 38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~ 70 (234)
T PLN02200 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETFGFK 70 (234)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 466778899999999999999999999999986
No 283
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.23 E-value=0.0024 Score=65.24 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=27.1
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|--.-+.+|+.|+||||||-+|-.+++.||-.
T Consensus 62 gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~ 93 (454)
T KOG2680|consen 62 GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDD 93 (454)
T ss_pred CcccceEEEEecCCCCCceeeeeehhhhhCCC
Confidence 33355799999999999999999999998753
No 284
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.21 E-value=0.0012 Score=63.35 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=41.3
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHHhCCcEEEEeccccccc
Q 012418 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAGA 224 (464)
Q Consensus 153 ~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~~Ge~-~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~ 224 (464)
.||.+....++|.|+-|+|||+.++.++.+.-........ ...+..+ ..--|+.|||++.+.
T Consensus 46 ~pg~k~d~~lvl~G~QG~GKStf~~~L~~~~~~d~~~~~~~kd~~~~l----------~~~~iveldEl~~~~ 108 (198)
T PF05272_consen 46 EPGCKNDTVLVLVGKQGIGKSTFFRKLGPEYFSDSINDFDDKDFLEQL----------QGKWIVELDELDGLS 108 (198)
T ss_pred CCCCcCceeeeEecCCcccHHHHHHHHhHHhccCccccCCCcHHHHHH----------HHhHheeHHHHhhcc
Confidence 5788888999999999999999999997763222111111 1111111 112599999999865
No 285
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.21 E-value=0.0025 Score=62.33 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=23.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
|++....++|.||||||||++|..++..+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57777899999999999999986555543
No 286
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.17 E-value=0.00029 Score=74.38 Aligned_cols=127 Identities=16% Similarity=0.175 Sum_probs=73.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCC-C------CCCCChHH--HHHHHHHHH-----------HHHHHhCCcEEEEec
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGI-N------GNAGEPAK--LIRQRYREA-----------ADIIKKGKMCCLFIN 218 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~-~------~~~Ge~~k--~Ir~~F~~A-----------~~~~~~~~P~ILfID 218 (464)
-+-+|++|++||||+++|++|...... . -+++.... ...++|..+ ..+..+..-..||+|
T Consensus 101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLD 180 (403)
T COG1221 101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLD 180 (403)
T ss_pred CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehh
Confidence 367999999999999999999855433 1 11111111 111244422 122223456799999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhcc-----CCcceEE
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR-----DGRMEKF 293 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlR-----pGRfD~~ 293 (464)
||-.+-. .++..|+++++.-+..-+.+. ......|.+|++||- .++.+++. +-|....
T Consensus 181 EI~~LP~-------------~~Q~kLl~~le~g~~~rvG~~--~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~ 243 (403)
T COG1221 181 EIHRLPP-------------EGQEKLLRVLEEGEYRRVGGS--QPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILT 243 (403)
T ss_pred hhhhCCH-------------hHHHHHHHHHHcCceEecCCC--CCcCCCceeeecccc--CHHHHHHhhcchhhhhcCce
Confidence 9964422 234557777774333334332 223467889999986 35555544 0134444
Q ss_pred EeCCCHHHH
Q 012418 294 YWAPTREDR 302 (464)
Q Consensus 294 i~iP~~eeR 302 (464)
|.+|...+|
T Consensus 244 I~LPpLrER 252 (403)
T COG1221 244 ITLPPLRER 252 (403)
T ss_pred ecCCChhhc
Confidence 556888887
No 287
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.15 E-value=0.00054 Score=72.30 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=69.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC-------CCCCChHHHH-HHHHHHH-----------HHHHHhCCcEEEEecc
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN-------GNAGEPAKLI-RQRYREA-----------ADIIKKGKMCCLFIND 219 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~-------~~~Ge~~k~I-r~~F~~A-----------~~~~~~~~P~ILfIDE 219 (464)
...++|+|++||||+.+|+++....... ...+-++..+ ..+|... ...+.......|||||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEec
Confidence 3568899999999999999998876533 1112123333 3344421 0111234567999999
Q ss_pred ccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC-------CCCchhhccCCcce-
Q 012418 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIRDGRME- 291 (464)
Q Consensus 220 IDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~-------~~LDpALlRpGRfD- 291 (464)
||.+-.. ++..|++++.+.....+.+. .....++.||+||+.. ..+.+.|.. |+.
T Consensus 242 i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~ 304 (445)
T TIGR02915 242 IGDLPLN-------------LQAKLLRFLQERVIERLGGR--EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIAE 304 (445)
T ss_pred hhhCCHH-------------HHHHHHHHHhhCeEEeCCCC--ceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhcc
Confidence 9976432 23445555552211111221 0112356788888764 223333321 222
Q ss_pred EEEeCCCHHHHHH
Q 012418 292 KFYWAPTREDRIG 304 (464)
Q Consensus 292 ~~i~iP~~eeR~e 304 (464)
..|.+|...+|.+
T Consensus 305 ~~i~lPpLr~R~~ 317 (445)
T TIGR02915 305 ISITIPPLRSRDG 317 (445)
T ss_pred ceecCCCchhchh
Confidence 2345688877743
No 288
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.14 E-value=0.00039 Score=62.07 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=24.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|+|+||||+|||++|+.+|+++|++
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~ 26 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLP 26 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 7899999999999999999999987
No 289
>PRK14527 adenylate kinase; Provisional
Probab=97.13 E-value=0.00046 Score=64.90 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=27.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+.|..+++.||||+|||++|+.+|+++++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~ 33 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLK 33 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 467889999999999999999999999886
No 290
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.13 E-value=0.00059 Score=75.50 Aligned_cols=127 Identities=17% Similarity=0.221 Sum_probs=70.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC--------CCCChHHH-----HHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGING--------NAGEPAKL-----IRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~--------~~Ge~~k~-----Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
.+.-..|||.|-||||||.|-+.+++-+.... -+|-+... -+++..+. ..+-.....|..|||+|+
T Consensus 459 ~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLes-GALVLSD~GiCCIDEFDK 537 (804)
T KOG0478|consen 459 FRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLES-GALVLSDNGICCIDEFDK 537 (804)
T ss_pred ccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeec-CcEEEcCCceEEchhhhh
Confidence 44446899999999999999999998764331 11111000 01111111 111123455777999998
Q ss_pred cc-cCCCCCCccchhhHHHHHHHHhhhcCCCc-ccCCCccccCCCCCceEEEEeCCCC-------------CCchhhccC
Q 012418 223 GA-GRMGGTTQYTVNNQMVNATLMNIADNPTN-VQLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRD 287 (464)
Q Consensus 223 l~-~~r~~~~~~~~~~~~v~~~L~~llD~~~~-v~ldG~~~~~~~~~V~VIaTTN~~~-------------~LDpALlRp 287 (464)
+- ..|. .|.+.+..++. +-.-|.+ ..-+.+.=||+++|..+ .|+|.||+
T Consensus 538 M~dStrS--------------vLhEvMEQQTvSIAKAGII-~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS- 601 (804)
T KOG0478|consen 538 MSDSTRS--------------VLHEVMEQQTLSIAKAGII-ASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS- 601 (804)
T ss_pred hhHHHHH--------------HHHHHHHHhhhhHhhccee-eeccccceeeeeeccccccCCCCCchhhccCCChhhhh-
Confidence 83 2222 12222221111 1112331 12345556899999433 48899998
Q ss_pred CcceEEEeC---CCHH
Q 012418 288 GRMEKFYWA---PTRE 300 (464)
Q Consensus 288 GRfD~~i~i---P~~e 300 (464)
|||.+|.+ |++.
T Consensus 602 -RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 602 -RFDLIFLLLDKPDER 616 (804)
T ss_pred -hhcEEEEEecCcchh
Confidence 99998885 6655
No 291
>PRK14531 adenylate kinase; Provisional
Probab=97.12 E-value=0.00047 Score=64.59 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=25.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+-|+|.||||+|||++|+.+|..+|+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~ 29 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLR 29 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458999999999999999999999987
No 292
>PRK03839 putative kinase; Provisional
Probab=97.12 E-value=0.00039 Score=64.52 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=24.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+|.|+||+|||++++.+|+.++++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~ 27 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYE 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999999987
No 293
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.11 E-value=0.00038 Score=64.35 Aligned_cols=25 Identities=32% Similarity=0.696 Sum_probs=23.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|+|.||||+|||++|+.+|.++|+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~ 26 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 7899999999999999999999986
No 294
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.00037 Score=65.89 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=24.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+|.||||+|||++|+.||+.++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999999887
No 295
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.10 E-value=0.00057 Score=72.40 Aligned_cols=127 Identities=16% Similarity=0.229 Sum_probs=68.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCC-CChHHHH-HHHHHHH-----------HHHHHhCCcEEEEec
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------GNA-GEPAKLI-RQRYREA-----------ADIIKKGKMCCLFIN 218 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~-Ge~~k~I-r~~F~~A-----------~~~~~~~~P~ILfID 218 (464)
.+..+++.|.+||||+++|+++....... -.. .-+...+ ..+|... ...+.......||||
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLD 235 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEE
Confidence 34578999999999999999998875432 111 1122222 2333311 011123456889999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcce-------
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME------- 291 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD------- 291 (464)
|||.+-.. +...|++++++....-..+. ......+.||+|||..- ..+++.|+|.
T Consensus 236 ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l---~~~~~~~~f~~~L~~rl 297 (463)
T TIGR01818 236 EIGDMPLD-------------AQTRLLRVLADGEFYRVGGR--TPIKVDVRIVAATHQNL---EALVRQGKFREDLFHRL 297 (463)
T ss_pred chhhCCHH-------------HHHHHHHHHhcCcEEECCCC--ceeeeeeEEEEeCCCCH---HHHHHcCCcHHHHHHHh
Confidence 99876432 23345555552211111221 01223567888887641 1333444443
Q ss_pred --EEEeCCCHHHH
Q 012418 292 --KFYWAPTREDR 302 (464)
Q Consensus 292 --~~i~iP~~eeR 302 (464)
..|.+|...+|
T Consensus 298 ~~~~i~lPpLr~R 310 (463)
T TIGR01818 298 NVIRIHLPPLRER 310 (463)
T ss_pred CcceecCCCcccc
Confidence 25567876666
No 296
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.09 E-value=0.0027 Score=65.99 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
|++.-....|+||||||||.||.-+|-..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~ 150 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTT 150 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHH
Confidence 77888899999999999999999887544
No 297
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.08 E-value=0.0011 Score=69.51 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
-.||+||||||||+|++.+++.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 459999999999999999999763
No 298
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.06 E-value=0.00052 Score=63.29 Aligned_cols=26 Identities=46% Similarity=0.774 Sum_probs=24.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.++|.||||+|||++|+.+++++|+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 68899999999999999999999876
No 299
>PRK07261 topology modulation protein; Provisional
Probab=97.04 E-value=0.0015 Score=60.83 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+|.|+||+|||+||+.++..++++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 37899999999999999999998876
No 300
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.04 E-value=0.0029 Score=61.82 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=25.2
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.|+++...+||+||||||||.+|.-++.+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 48888899999999999999999876654
No 301
>PRK14532 adenylate kinase; Provisional
Probab=97.03 E-value=0.00047 Score=64.34 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=24.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+|.||||+|||++|+.+|+++|+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~ 27 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMV 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 37899999999999999999999987
No 302
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.03 E-value=0.002 Score=61.92 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=25.4
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.|++....+||.||||+|||.+|.-++.+
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~ 42 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYN 42 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 48888899999999999999999876644
No 303
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.02 E-value=0.0017 Score=61.11 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+....++|.||+|+|||++.++++..+.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999998764
No 304
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.00 E-value=0.0031 Score=62.64 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=25.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.|++....+|++||||||||++|--+|.+
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 37888899999999999999999988765
No 305
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.00 E-value=0.0017 Score=73.90 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=45.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh-CC--C---------------CCCCChH--------HHHHHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM-GI--N---------------GNAGEPA--------KLIRQRYREAADIIK 208 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el-g~--~---------------~~~Ge~~--------k~Ir~~F~~A~~~~~ 208 (464)
|++....++|+||||||||+||-.++.+. .. . ...|-.. ......+..+..+++
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 78888999999999999999996544432 11 1 0001000 001223334444556
Q ss_pred hCCcEEEEecccccccc
Q 012418 209 KGKMCCLFINDLDAGAG 225 (464)
Q Consensus 209 ~~~P~ILfIDEIDal~~ 225 (464)
...+.+|+||-|.++..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 77899999999999885
No 306
>PRK13946 shikimate kinase; Provisional
Probab=96.99 E-value=0.002 Score=60.51 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.++-|+|.|+||||||++++.+|+.+|++
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~ 37 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLP 37 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34679999999999999999999999998
No 307
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.99 E-value=0.0021 Score=57.51 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=23.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
++|.|+||+|||++|+.+++.++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~ 26 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAP 26 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCE
Confidence 7899999999999999999998765
No 308
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.99 E-value=0.0016 Score=59.19 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|+|.||||||||++|+.+++.++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~ 25 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAK 25 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCe
Confidence 4688999999999999999998865
No 309
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.98 E-value=0.0019 Score=68.41 Aligned_cols=25 Identities=12% Similarity=-0.063 Sum_probs=22.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.-++|.||||||||+|++.|++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3489999999999999999999854
No 310
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.97 E-value=0.0052 Score=59.31 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
|+++..-++|.|+||+|||++|..++..+
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~ 37 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENI 37 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 77777889999999999999998887664
No 311
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.97 E-value=0.00078 Score=74.14 Aligned_cols=26 Identities=35% Similarity=0.300 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.+.|+|.||||+|||+||++||+.|.
T Consensus 103 ~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 103 KQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHH
Confidence 36999999999999999999999864
No 312
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.97 E-value=0.0036 Score=59.46 Aligned_cols=22 Identities=27% Similarity=0.051 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVF 180 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA 180 (464)
...++|+||.|+|||++.++|+
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHH
Confidence 3579999999999999999999
No 313
>PRK06762 hypothetical protein; Provisional
Probab=96.97 E-value=0.00074 Score=61.64 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
|..++|.|+||+|||++|+.+++.++.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~ 28 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR 28 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999999999853
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.96 E-value=0.001 Score=61.15 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+++.-.+.|.||.|+|||+|.++++....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44556899999999999999999998753
No 315
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.96 E-value=0.0016 Score=59.41 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|.|+|+||||||+|++.+++. |.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~ 25 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYP 25 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-E
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCe
Confidence 679999999999999999988 765
No 316
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.95 E-value=0.001 Score=62.38 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999997777776665
No 317
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.94 E-value=0.00077 Score=59.45 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=24.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|.|.|+||||||++|+.+|.+++++
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~ 26 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLP 26 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6899999999999999999999998
No 318
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.94 E-value=0.0016 Score=71.64 Aligned_cols=157 Identities=17% Similarity=0.231 Sum_probs=84.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC--------CCCCChHHHHHH--HHHHH--HHHHHhCCcEEEEeccccccccC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN--------GNAGEPAKLIRQ--RYREA--ADIIKKGKMCCLFINDLDAGAGR 226 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~--------~~~Ge~~k~Ir~--~F~~A--~~~~~~~~P~ILfIDEIDal~~~ 226 (464)
-..|||.|-||||||-+-+++++-+-.. .-+|-+...+++ -++.+ +..+--....|..|||+|++.-+
T Consensus 378 Dinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~ 457 (764)
T KOG0480|consen 378 DINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK 457 (764)
T ss_pred CceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH
Confidence 3679999999999999999999875433 111111111110 01110 01111334567789999987543
Q ss_pred CCCCCccchhhHHHHHHHHhhhcCCCcccC--CCccccCCCCCceEEEEeCCCC-------------CCchhhccCCcce
Q 012418 227 MGGTTQYTVNNQMVNATLMNIADNPTNVQL--PGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRDGRME 291 (464)
Q Consensus 227 r~~~~~~~~~~~~v~~~L~~llD~~~~v~l--dG~~~~~~~~~V~VIaTTN~~~-------------~LDpALlRpGRfD 291 (464)
++ +.|.+-+.. +.+++ -|. .-.-+.|.-||+++|... .+.+|++. |||
T Consensus 458 ----dq---------vAihEAMEQ-QtISIaKAGv-~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFD 520 (764)
T KOG0480|consen 458 ----DQ---------VAIHEAMEQ-QTISIAKAGV-VATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFD 520 (764)
T ss_pred ----hH---------HHHHHHHHh-heehheecce-EEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhc
Confidence 12 112222221 11122 122 112234556888888754 47899997 999
Q ss_pred EEEeC---CCHHHHHHHHHhhcCCCCCChhHHHHHhcCCChhhHH
Q 012418 292 KFYWA---PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSID 333 (464)
Q Consensus 292 ~~i~i---P~~eeR~eIl~~~~~~~~v~~~~la~lt~gfsgadLd 333 (464)
.++.+ |++..=..|..+++..+. ..++.......|+-..+.
T Consensus 521 L~FiLlD~~nE~~D~~ia~hIld~h~-~i~~~~~~~~~~~~e~vr 564 (764)
T KOG0480|consen 521 LFFILLDDCNEVVDYAIARHILDLHR-GIDDATERVCVYTLEQVR 564 (764)
T ss_pred EEEEEecCCchHHHHHHHHHHHHHhc-cccccccccccccHHHHH
Confidence 98885 888777777655553321 111112222566665554
No 319
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.94 E-value=0.0012 Score=60.30 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=22.8
Q ss_pred HHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 146 i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+..++.......++.++|+|+||+|||++.+++...+
T Consensus 11 ~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 11 RLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp HHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444443445667899999999999999999887754
No 320
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.93 E-value=0.00066 Score=63.04 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=23.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|+|.||||+|||++|+.+|+.+|+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~ 26 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLP 26 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 7899999999999999999999887
No 321
>PRK13949 shikimate kinase; Provisional
Probab=96.93 E-value=0.0016 Score=60.76 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=24.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+|.||||+|||++++.+|+.++++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~ 28 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLS 28 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 58999999999999999999999987
No 322
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.93 E-value=0.0036 Score=63.90 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=26.9
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|++....++|+||||||||.+|--+|..+
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 378888999999999999999999998764
No 323
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.91 E-value=0.0043 Score=58.45 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHH
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
+++...+.|.||.|+|||+|.+++..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 44556889999999999999999963
No 324
>PTZ00035 Rad51 protein; Provisional
Probab=96.91 E-value=0.0039 Score=64.55 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=27.1
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
|++....+.|+||||||||.||..+|....+
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~ql 144 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQL 144 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhcc
Confidence 7888889999999999999999999866543
No 325
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.91 E-value=0.0054 Score=62.15 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=27.4
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.|++....++|+||||||||++|-.+|..+-
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~ 120 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQ 120 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3788889999999999999999999987753
No 326
>PRK04040 adenylate kinase; Provisional
Probab=96.88 E-value=0.0009 Score=63.57 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh--CCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM--GIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el--g~~ 186 (464)
+|+.++|+|+||||||++++.++.++ +..
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~ 31 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYK 31 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhccCCe
Confidence 36789999999999999999999999 554
No 327
>PRK02496 adk adenylate kinase; Provisional
Probab=96.87 E-value=0.00088 Score=62.35 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=24.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-++|.||||+|||++|+.+|..+++.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~ 28 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIP 28 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999999886
No 328
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.87 E-value=0.00075 Score=65.38 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..+|||+||||||||++|+++..-|
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3699999999999999999999764
No 329
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.87 E-value=0.0049 Score=57.73 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.+|+.||||+|||++|..++.+++.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCC
Confidence 58999999999999999999998755
No 330
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.87 E-value=0.0057 Score=57.48 Aligned_cols=19 Identities=32% Similarity=0.050 Sum_probs=18.2
Q ss_pred EEEEcCCCccHHHHHHHHH
Q 012418 162 LGIWGGKGQGKSFQCELVF 180 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA 180 (464)
++|+||.|.|||++.+.|+
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999999
No 331
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.86 E-value=0.011 Score=57.05 Aligned_cols=25 Identities=20% Similarity=-0.004 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
+....++|.||.|+|||++.+.++.
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999973
No 332
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.002 Score=64.25 Aligned_cols=63 Identities=29% Similarity=0.399 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHhhhhC---CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Q 012418 138 FMDKVVVHITKNFLNL---PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYRE 202 (464)
Q Consensus 138 ~~d~~~~~i~Kn~l~~---~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~~Ge~~k~Ir~~F~~ 202 (464)
++++.....+|.|+.+ .+.+.|+.+||=|+||+|||++|.-||.+||+...++. ..||+..+.
T Consensus 65 l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visT--D~IREvlR~ 130 (299)
T COG2074 65 LLEKGDPEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVIST--DSIREVLRK 130 (299)
T ss_pred HHHhcCHHHHHHHHHHHHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecc--hHHHHHHHH
Confidence 4555566778888864 57788999999999999999999999999999844332 224444443
No 333
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.86 E-value=0.0011 Score=65.01 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..|.-|+|.||||+|||++|+.+|+.+|++
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~ 33 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLK 33 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 345569999999999999999999999987
No 334
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.85 E-value=0.00094 Score=57.19 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 012418 162 LGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~el 183 (464)
|+|.|+||+|||++|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999988
No 335
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.84 E-value=0.0018 Score=66.99 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=39.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC-----CCCCChHHH--------H--------HHHHHHHHHHHHhCCcEEEEec
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN-----GNAGEPAKL--------I--------RQRYREAADIIKKGKMCCLFIN 218 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~-----~~~Ge~~k~--------I--------r~~F~~A~~~~~~~~P~ILfID 218 (464)
..+||.||+|+|||++.+++..++.-+ ..+.++... + ..-|..+...+-...|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 457899999999999999999887532 000100000 0 0124444333357889999999
Q ss_pred cc
Q 012418 219 DL 220 (464)
Q Consensus 219 EI 220 (464)
|+
T Consensus 203 Ei 204 (343)
T TIGR01420 203 EM 204 (343)
T ss_pred CC
Confidence 99
No 336
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.82 E-value=0.0025 Score=61.05 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
|+.++|.||+|+|||+.+--+|..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 78899999999999999999998764
No 337
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.81 E-value=0.0081 Score=57.74 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=25.5
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.|++....++|.|+||+|||.+|..++.+
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~ 39 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQ 39 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 37778889999999999999999988765
No 338
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.81 E-value=0.0022 Score=60.72 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=37.0
Q ss_pred CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcc
Q 012418 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 290 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRf 290 (464)
..+||+|||+-...+.+.... ......+ +.| . .....+.-||.+|.++..||+.+++ ..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~--~~~~~~~-~~l----~------------~hRh~g~diiliTQ~~~~id~~ir~--lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKG--KKVPEII-EFL----A------------QHRHYGWDIILITQSPSQIDKFIRD--LV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T------HHH-HGG----G------------GCCCTT-EEEEEES-GGGB-HHHHC--CE
T ss_pred CCcEEEEECChhhcCCCcccc--ccchHHH-HHH----H------------HhCcCCcEEEEEeCCHHHHhHHHHH--HH
Confidence 679999999999887766211 1111222 222 1 1334567899999999999998865 77
Q ss_pred eEEEeC
Q 012418 291 EKFYWA 296 (464)
Q Consensus 291 D~~i~i 296 (464)
+..+..
T Consensus 138 e~~~~~ 143 (193)
T PF05707_consen 138 EYHYHC 143 (193)
T ss_dssp EEEEEE
T ss_pred heEEEE
Confidence 777654
No 339
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.80 E-value=0.0051 Score=63.15 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
|++.....+|+||||||||.||.-+|-.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 7888899999999999999999887753
No 340
>PRK14530 adenylate kinase; Provisional
Probab=96.79 E-value=0.001 Score=63.74 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=24.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|+|.||||+|||++|+.+|+.+|++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~ 30 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVE 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 47889999999999999999999986
No 341
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=96.79 E-value=0.0027 Score=66.70 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=69.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCC-CChHHHH-HHHHHHHH-----------HHHHhCCcEEEEec
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------GNA-GEPAKLI-RQRYREAA-----------DIIKKGKMCCLFIN 218 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~-Ge~~k~I-r~~F~~A~-----------~~~~~~~P~ILfID 218 (464)
...-++++|.+||||+++|+++....... -.. ..+...+ ..+|.... ..+.......||||
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 34678999999999999999998765422 111 1122333 23343210 11223457889999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcce-------
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME------- 291 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD------- 291 (464)
|||.+... ++..|+..+++... ...|.. ......+.+|+||+..- ..++.+|+|.
T Consensus 241 ei~~l~~~-------------~q~~l~~~l~~~~~-~~~~~~-~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l 302 (441)
T PRK10365 241 EIGDISPM-------------MQVRLLRAIQEREV-QRVGSN-QTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRL 302 (441)
T ss_pred ccccCCHH-------------HHHHHHHHHccCcE-EeCCCC-ceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHh
Confidence 99987543 12334455542211 111110 01123456888887632 3445667774
Q ss_pred --EEEeCCCHHHH
Q 012418 292 --KFYWAPTREDR 302 (464)
Q Consensus 292 --~~i~iP~~eeR 302 (464)
..+.+|...+|
T Consensus 303 ~~~~i~~ppLreR 315 (441)
T PRK10365 303 NVVAIEVPSLRQR 315 (441)
T ss_pred ccceecCCChhhc
Confidence 34456777776
No 342
>PRK13948 shikimate kinase; Provisional
Probab=96.79 E-value=0.0027 Score=60.21 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
++|.-|+|.|++|||||++++.+|+.+|.+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 567889999999999999999999999987
No 343
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0032 Score=58.16 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+++...+.|.||.|+|||+|.++|+..+.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 44556899999999999999999998754
No 344
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.78 E-value=0.0014 Score=60.84 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.+.|+|.||||+|||++|+.++.+++..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~ 29 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEP 29 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 3579999999999999999999998754
No 345
>PRK00625 shikimate kinase; Provisional
Probab=96.78 E-value=0.0012 Score=62.15 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=24.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+|.|+||+|||++++.+|+.++++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~ 27 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLP 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999999987
No 346
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.78 E-value=0.0025 Score=59.19 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+++...+.|.||.|+|||+|+++++....
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45556899999999999999999998753
No 347
>PRK06547 hypothetical protein; Provisional
Probab=96.78 E-value=0.0014 Score=61.48 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=27.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..+..|++.|++|+|||++|+.+++.+++.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~ 42 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQ 42 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 557899999999999999999999998876
No 348
>PRK04296 thymidine kinase; Provisional
Probab=96.76 E-value=0.0024 Score=60.51 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
...+++||||+|||+++..++..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999999999998888875
No 349
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.76 E-value=0.0016 Score=59.05 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCCCCCCCh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEP 192 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~~Ge~ 192 (464)
++...++|.|+.|+|||++++.+++.+|....+..+
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SP 55 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSP 55 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCC
Confidence 455689999999999999999999999986444333
No 350
>PRK08233 hypothetical protein; Provisional
Probab=96.76 E-value=0.0013 Score=60.39 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+..|.|.|+||+|||+||+.++.+++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46788999999999999999999875
No 351
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.76 E-value=0.0038 Score=62.44 Aligned_cols=28 Identities=29% Similarity=0.080 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh-CCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM-GIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el-g~~ 186 (464)
++.|+|.||||||||++|+.+++.+ +..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~ 30 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAV 30 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCE
Confidence 5678999999999999999999998 543
No 352
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.76 E-value=0.01 Score=63.88 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=46.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----CC-CC-ChHHHHHHHH------------------HHHHHHHHhC
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----GN-AG-EPAKLIRQRY------------------REAADIIKKG 210 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----~~-~G-e~~k~Ir~~F------------------~~A~~~~~~~ 210 (464)
|+.+...+||+|+||+|||+|+..+|..+-.. -| .+ ++...+..+. ....+.++..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 78888899999999999999999998875322 01 11 2222222111 1122344567
Q ss_pred CcEEEEecccccccc
Q 012418 211 KMCCLFINDLDAGAG 225 (464)
Q Consensus 211 ~P~ILfIDEIDal~~ 225 (464)
+|.+|+||.|-.+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999987753
No 353
>PRK14526 adenylate kinase; Provisional
Probab=96.74 E-value=0.0021 Score=62.30 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=23.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|+|+||||+|||++|+.+|..+++.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~ 27 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYY 27 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999999886
No 354
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.74 E-value=0.0082 Score=58.16 Aligned_cols=22 Identities=36% Similarity=0.152 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
..++|+||.|+|||++.+.|+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999974
No 355
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.74 E-value=0.0026 Score=63.01 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
...||.||||||||++-+-||.-+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHh
Confidence 357899999999999999999875
No 356
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.74 E-value=0.0052 Score=58.31 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=20.0
Q ss_pred cEEEEEcCCCccHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVF 180 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA 180 (464)
+.++|.||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999998
No 357
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.73 E-value=0.0067 Score=57.12 Aligned_cols=28 Identities=29% Similarity=0.234 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...+.|.||+|+|||+|.++++..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455689999999999999999999874
No 358
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0012 Score=61.29 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=24.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-||++|-||||||++|+.||..+|+.
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~ 34 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLE 34 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCc
Confidence 57999999999999999999999997
No 359
>PRK14528 adenylate kinase; Provisional
Probab=96.72 E-value=0.0015 Score=61.67 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=24.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-+++.||||+|||++|+.+|+.+|++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~ 28 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIP 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999999987
No 360
>PRK06217 hypothetical protein; Validated
Probab=96.72 E-value=0.0013 Score=61.56 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=24.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+|.|+||+|||++|+++++.+|++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~ 28 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP 28 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 48999999999999999999999876
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.0033 Score=57.00 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
.+...++|.||.|+|||+|.++|+..+..
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44468899999999999999999987643
No 362
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0027 Score=66.66 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.....+.|.||+|||||+|.++||...
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445688999999999999999999763
No 363
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.71 E-value=0.0013 Score=62.85 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=23.8
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|+|.||||+|||++|+.+|..+|+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~ 26 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLP 26 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC
Confidence 7899999999999999999999987
No 364
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.70 E-value=0.0017 Score=60.06 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=26.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
.+.|.-|+|.|+||+|||++|+++++.+..
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 356778999999999999999999998763
No 365
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.68 E-value=0.0021 Score=58.11 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=42.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC------------CCCC-ChHHHHHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------GNAG-EPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~G-e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
+++...+.|.||.|+|||+|.++++..+... .++- -+... +++..-|.. -..+|.+|++||-.+
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~-~~rv~lara--l~~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGE-KMRLALAKL--LLENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHH-HHHHHHHHH--HhcCCCEEEEeCCcc
Confidence 3455688999999999999999999876432 1111 11111 233333322 356899999999865
Q ss_pred cc
Q 012418 223 GA 224 (464)
Q Consensus 223 l~ 224 (464)
..
T Consensus 100 ~L 101 (144)
T cd03221 100 HL 101 (144)
T ss_pred CC
Confidence 43
No 366
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.68 E-value=0.0015 Score=62.74 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=24.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+++||||+|||++|+.+|..+|+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~ 27 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIP 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 38899999999999999999999987
No 367
>PRK13764 ATPase; Provisional
Probab=96.66 E-value=0.0026 Score=70.53 Aligned_cols=28 Identities=21% Similarity=0.045 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
...++|+.||||+|||+++++++.++.-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999998753
No 368
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.66 E-value=0.0071 Score=56.69 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.2
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+|++||||+|||++|..++.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~ 26 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGP 26 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC
Confidence 6899999999999999999886644
No 369
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.66 E-value=0.0073 Score=59.49 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
|+.+-..++|.||||+|||+++..+|..+
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 66777788999999999999999887764
No 370
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.65 E-value=0.0055 Score=55.77 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=21.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 012418 162 LGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~el 183 (464)
++|.|+||+|||++|+.++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 371
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.0032 Score=65.28 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
-.+.|.||.|||||++-+.||.-.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999753
No 372
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.62 E-value=0.008 Score=55.22 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=57.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCCC---------CCCC---------------hHHHHHHHHHHHHHHHHh--CCc
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGING---------NAGE---------------PAKLIRQRYREAADIIKK--GKM 212 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------~~Ge---------------~~k~Ir~~F~~A~~~~~~--~~P 212 (464)
|+..+|.||.|+|||.+.++++-.++... ..|. ...-.+++...+..++.. ..|
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~ 100 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPR 100 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCC
Confidence 46899999999999999999876543220 0110 001123333433333332 389
Q ss_pred EEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCc
Q 012418 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 281 (464)
Q Consensus 213 ~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LD 281 (464)
.+++|||+.+...... .+.+...+.+... . +..+|++|.+++...
T Consensus 101 ~llllDEp~~gld~~~--------~~~l~~~l~~~~~-------------~---~~~vii~TH~~~~~~ 145 (162)
T cd03227 101 PLYILDEIDRGLDPRD--------GQALAEAILEHLV-------------K---GAQVIVITHLPELAE 145 (162)
T ss_pred CEEEEeCCCCCCCHHH--------HHHHHHHHHHHHh-------------c---CCEEEEEcCCHHHHH
Confidence 9999999976543321 2333334433322 1 346888888876543
No 373
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.60 E-value=0.0016 Score=58.80 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.7
Q ss_pred EEcCCCccHHHHHHHHHHHhCCC
Q 012418 164 IWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 164 L~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|.||||+|||++|+.||.+.|+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~ 23 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV 23 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE
T ss_pred CcCCCCCChHHHHHHHHHhcCcc
Confidence 67999999999999999999986
No 374
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.00029 Score=78.69 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=76.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC--------CCCCChHHHHHHHH-H----HHHHHHHhCCcEEEEeccccccccC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN--------GNAGEPAKLIRQRY-R----EAADIIKKGKMCCLFINDLDAGAGR 226 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~--------~~~Ge~~k~Ir~~F-~----~A~~~~~~~~P~ILfIDEIDal~~~ 226 (464)
.-|||.|-||||||.|-+.+++-+-.. .-+|-++..+|+.. . .| ..+-...+.|..|||+|++-..
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~Lea-GALVlAD~Gv~cIDEfdKm~~~ 398 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEA-GALVLADGGVCCIDEFDKMNEE 398 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeC-CEEEEecCCEEEEEeccCCChH
Confidence 579999999999999999999876443 22333333333322 1 11 1112445789999999986332
Q ss_pred CCCCCccchhhHHHHHHHHhhhcCCCcccCCCc-cccCCCCCceEEEEeCCCC-------------CCchhhccCCcceE
Q 012418 227 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM-YNQEENPRVPIIVTGNDFS-------------TLYAPLIRDGRMEK 292 (464)
Q Consensus 227 r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~-~~~~~~~~V~VIaTTN~~~-------------~LDpALlRpGRfD~ 292 (464)
.. ..|.+.+. ++.+++... ....-+.+.-|++++|... .|+++||. |||.
T Consensus 399 ----dr---------~aihEaME-QQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDL 462 (682)
T COG1241 399 ----DR---------VAIHEAME-QQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDL 462 (682)
T ss_pred ----HH---------HHHHHHHH-hcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCe
Confidence 11 11222222 112222211 1122335556888888766 58899997 9999
Q ss_pred EEeC---CCHHHHHHHH
Q 012418 293 FYWA---PTREDRIGVC 306 (464)
Q Consensus 293 ~i~i---P~~eeR~eIl 306 (464)
.+.+ |+.+.=.+|.
T Consensus 463 ifvl~D~~d~~~D~~ia 479 (682)
T COG1241 463 IFVLKDDPDEEKDEEIA 479 (682)
T ss_pred eEEecCCCCccchHHHH
Confidence 8886 7765444443
No 375
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.59 E-value=0.016 Score=55.33 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 012418 162 LGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~el 183 (464)
.+|+||.|+|||+|..+|+..+
T Consensus 24 ~~i~G~NGsGKStll~ai~~~l 45 (198)
T cd03276 24 NFIVGNNGSGKSAILTALTIGL 45 (198)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 3799999999999999998754
No 376
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.58 E-value=0.026 Score=64.42 Aligned_cols=28 Identities=14% Similarity=-0.035 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
...+-++|+||+|.|||+++...+...+
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~~~ 57 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAGKN 57 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456799999999999999999887655
No 377
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.56 E-value=0.0046 Score=63.07 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=37.2
Q ss_pred HHHHHHHhhhh-CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 142 VVVHITKNFLN-LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 142 ~~~~i~Kn~l~-~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.+..+++.++. ...+.++..|.|.|+||||||++++.+|..+|++
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~ 160 (309)
T PRK08154 115 RVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVP 160 (309)
T ss_pred HHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35566666554 3466777899999999999999999999999997
No 378
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.0018 Score=61.19 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=23.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+++|.||||||++|+.++ ++|.+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~ 26 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYK 26 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCc
Confidence 47899999999999999999 99987
No 379
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.55 E-value=0.0081 Score=56.98 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...+.|.||.|+|||+|.++|+..+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455679999999999999999999864
No 380
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.54 E-value=0.0065 Score=55.89 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+++.||||+|||+++..+|..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999875
No 381
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.53 E-value=0.0034 Score=62.37 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-.+.|.||+|||||+|-+.||.-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3347889999999999999999975
No 382
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.52 E-value=0.0081 Score=58.74 Aligned_cols=25 Identities=24% Similarity=-0.051 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
.....++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4446789999999999999999998
No 383
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.52 E-value=0.004 Score=62.67 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=38.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC-----------------CC-CCChHHHHHHHHHHHHHHHHhCCcEEEEecccccc
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN-----------------GN-AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~-----------------~~-~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal 223 (464)
|+|+|.||+|||++|+.++..+.-. .| -...++.+|..+..+.+..- .+..|+++|+.--+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCchH
Confidence 6899999999999999999975321 22 23357788877776655433 33479999997544
No 384
>PF13245 AAA_19: Part of AAA domain
Probab=96.51 E-value=0.0027 Score=51.84 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=18.0
Q ss_pred cEEEEEcCCCccHH-HHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKS-FQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT-~LAkaIA~el 183 (464)
..+++.|||||||| +++++++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34667999999999 6666666655
No 385
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.51 E-value=0.0098 Score=55.03 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.....+.|.||.|+|||+|.++++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344578999999999999999999875
No 386
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.51 E-value=0.0033 Score=64.05 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++....+++.||+|+|||++.++++..+.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 44557999999999999999999998763
No 387
>PLN02674 adenylate kinase
Probab=96.50 E-value=0.0025 Score=63.33 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+++..|+|.||||+|||++|+.+|..+|+.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~ 58 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLC 58 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 445668899999999999999999999987
No 388
>PRK01184 hypothetical protein; Provisional
Probab=96.50 E-value=0.0022 Score=59.56 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+.|+|.||||+|||++++ +++++|++
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~ 27 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIP 27 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCc
Confidence 468999999999999998 78999887
No 389
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.50 E-value=0.0024 Score=58.54 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=24.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|+|.|+||||||++++.+|+.+|++
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~ 29 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYR 29 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47889999999999999999999997
No 390
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.50 E-value=0.0039 Score=58.86 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=25.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+-|.|.|++|+|||++.+++|+.|+++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCC
Confidence 357899999999999999999999998
No 391
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.50 E-value=0.0072 Score=56.26 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...++|.||.|+|||+|.++|+..+
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455689999999999999999999875
No 392
>PRK04182 cytidylate kinase; Provisional
Probab=96.49 E-value=0.0025 Score=58.24 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=24.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|+|.|+||||||++|+.+|+.+|++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~ 27 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLK 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 58899999999999999999999987
No 393
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.48 E-value=0.015 Score=55.78 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=67.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCC----------------------------------CCCC----ChHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM---GIN----------------------------------GNAG----EPAKLIRQ 198 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el---g~~----------------------------------~~~G----e~~k~Ir~ 198 (464)
--|++||++|.|||+.|-.+|-.+ |.. .+.. +.....++
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 357899999999999999998763 222 0111 11244566
Q ss_pred HHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC
Q 012418 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 278 (464)
Q Consensus 199 ~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~ 278 (464)
.+..|.+.+......+|+||||=......- .+ ...|..+| . .....+=||+|.+.
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gl-i~-----~eevi~~L----~-------------~rp~~~evVlTGR~-- 157 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGY-LD-----VEEVLEAL----N-------------ARPGMQHVVITGRG-- 157 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCC-cc-----HHHHHHHH----H-------------cCCCCCEEEEECCC--
Confidence 777887777788889999999954433211 11 12333333 3 23345679999987
Q ss_pred CCchhhccCCcceEEEe
Q 012418 279 TLYAPLIRDGRMEKFYW 295 (464)
Q Consensus 279 ~LDpALlRpGRfD~~i~ 295 (464)
.|+.|+- +-|.+-+
T Consensus 158 -~p~~Lie--~ADlVTE 171 (191)
T PRK05986 158 -APRELIE--AADLVTE 171 (191)
T ss_pred -CCHHHHH--hCchhee
Confidence 4777764 4555433
No 394
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.47 E-value=0.0037 Score=63.92 Aligned_cols=47 Identities=30% Similarity=0.412 Sum_probs=36.2
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQRYRE 202 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~~Ge~~k~Ir~~F~~ 202 (464)
.+.+.|..|++.|++|||||++|..+|..+|.+..++ ...+|+.++.
T Consensus 87 ~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~--~D~~re~~R~ 133 (301)
T PRK04220 87 RKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIG--TDSIREVMRK 133 (301)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEe--chHHHHHHHH
Confidence 4557889999999999999999999999999873333 2345555554
No 395
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.47 E-value=0.024 Score=56.96 Aligned_cols=35 Identities=23% Similarity=0.537 Sum_probs=28.9
Q ss_pred hhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 150 ~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++..+....|..|.|+|+=|+|||++.+.+-+++.
T Consensus 11 ~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 11 IIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred HHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44444458899999999999999999999988763
No 396
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.46 E-value=0.013 Score=64.91 Aligned_cols=131 Identities=11% Similarity=-0.010 Sum_probs=71.7
Q ss_pred HhhhhCCCCCC-C-cEEEEEcCCCccHHHHHHHHHHHhCC--C-----------CCCCChHHHHHHHHHHH-----HHHH
Q 012418 148 KNFLNLPNVKV-P-LILGIWGGKGQGKSFQCELVFAKMGI--N-----------GNAGEPAKLIRQRYREA-----ADII 207 (464)
Q Consensus 148 Kn~l~~~gi~~-p-~GLLL~GPPGtGKT~LAkaIA~elg~--~-----------~~~Ge~~k~Ir~~F~~A-----~~~~ 207 (464)
|.-+.+.-+.+ - -||||-|++||+||+++++++.-|.. + ..+|.. -|...+..- -.++
T Consensus 12 ~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGll 89 (584)
T PRK13406 12 ALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLL 89 (584)
T ss_pred HHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCce
Confidence 33333444544 3 58999999999999999999998754 2 223321 011111100 0111
Q ss_pred HhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhc-CCCcccCCCccccCCCCCceEEEEeCCC---CCCchh
Q 012418 208 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD-NPTNVQLPGMYNQEENPRVPIIVTGNDF---STLYAP 283 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD-~~~~v~ldG~~~~~~~~~V~VIaTTN~~---~~LDpA 283 (464)
......||||||+.-+- ..+...|++.++ ..-.++-+|... ..-.+..+|+|-|.. ..|+++
T Consensus 90 a~Ah~GvL~lDe~n~~~-------------~~~~~aLleame~G~vtIeR~G~s~-~~Pa~F~LIat~~~~~~~~~L~~~ 155 (584)
T PRK13406 90 AEADGGVLVLAMAERLE-------------PGTAARLAAALDTGEVRLERDGLAL-RLPARFGLVALDEGAEEDERAPAA 155 (584)
T ss_pred eeccCCEEEecCcccCC-------------HHHHHHHHHHHhCCcEEEEECCcEE-ecCCCcEEEecCCChhcccCCCHH
Confidence 23334799999996321 122333444444 222222344411 112345566663332 449999
Q ss_pred hccCCcceEEEeC
Q 012418 284 LIRDGRMEKFYWA 296 (464)
Q Consensus 284 LlRpGRfD~~i~i 296 (464)
|+- ||+..+.+
T Consensus 156 lLD--Rf~l~v~v 166 (584)
T PRK13406 156 LAD--RLAFHLDL 166 (584)
T ss_pred hHh--heEEEEEc
Confidence 996 99999997
No 397
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.46 E-value=0.015 Score=54.19 Aligned_cols=105 Identities=13% Similarity=0.264 Sum_probs=64.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCC-------CC---CC-------------------------ChH---HHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM---GIN-------GN---AG-------------------------EPA---KLIRQR 199 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el---g~~-------~~---~G-------------------------e~~---k~Ir~~ 199 (464)
-|.+|+++|.|||++|-.+|-.. |.. +- .| +.. ...++.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 36688999999999999998663 222 10 11 111 234556
Q ss_pred HHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCC
Q 012418 200 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 279 (464)
Q Consensus 200 F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~ 279 (464)
++.|.+.++.....+|+||||-......- .+ ... +..+++ ....+.=||+|++.
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gl-i~-----~~~----v~~ll~-------------~rp~~~evIlTGr~--- 137 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGL-LD-----VEE----VVDLLK-------------AKPEDLELVLTGRN--- 137 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCC-CC-----HHH----HHHHHH-------------cCCCCCEEEEECCC---
Confidence 66777777788889999999965433211 11 122 333333 23345569999988
Q ss_pred CchhhccCCcceEE
Q 012418 280 LYAPLIRDGRMEKF 293 (464)
Q Consensus 280 LDpALlRpGRfD~~ 293 (464)
.|+.|+- +-|.+
T Consensus 138 ~p~~l~e--~AD~V 149 (159)
T cd00561 138 APKELIE--AADLV 149 (159)
T ss_pred CCHHHHH--hCcee
Confidence 4777764 45543
No 398
>PRK12338 hypothetical protein; Provisional
Probab=96.46 E-value=0.0026 Score=65.47 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..|..|++.|+||+|||++|+++|..+|+.
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~ 31 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIK 31 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCe
Confidence 457899999999999999999999999987
No 399
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.45 E-value=0.0095 Score=61.94 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
|+..-..++++|+||+|||.+|.-+|-..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~ 147 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTC 147 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHh
Confidence 67777899999999999999999887543
No 400
>PRK05973 replicative DNA helicase; Provisional
Probab=96.45 E-value=0.02 Score=56.73 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=25.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|+++...+||.|+||+|||++|--++.+.
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 378777899999999999999998877654
No 401
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.45 E-value=0.0049 Score=64.72 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.....+.|.||.|||||+|.++||...
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578999999999999999999764
No 402
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.0026 Score=66.90 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.....++|.||+|+|||+++..+|..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455789999999999999999999874
No 403
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0022 Score=60.12 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=24.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|-+.||||||||+.|+.+|+.+|++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 36689999999999999999999998
No 404
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.43 E-value=0.003 Score=50.20 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 012418 162 LGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~el 183 (464)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 405
>PRK06696 uridine kinase; Validated
Probab=96.43 E-value=0.0054 Score=59.30 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
...|..|++.|++|+|||++|+.|+..++
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999999983
No 406
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.42 E-value=0.051 Score=54.04 Aligned_cols=127 Identities=13% Similarity=0.237 Sum_probs=71.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----------------CCC------C-----ChHHHHHHHHHHHHHHHH
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------GNA------G-----EPAKLIRQRYREAADIIK 208 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------~~~------G-----e~~k~Ir~~F~~A~~~~~ 208 (464)
.+.|--+++.|++|||||+++..+...+.-. .++ . +.+..+...-....+..+
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 4556678899999999999999998876432 000 0 011111111111111111
Q ss_pred ------hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCch
Q 012418 209 ------KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 282 (464)
Q Consensus 209 ------~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDp 282 (464)
...+++|+|||+-. . . ..++.+.+++ . ....-++-+|..+...-.||+
T Consensus 90 k~~~~k~~~~~LiIlDD~~~---~-----~--~k~~~l~~~~----~------------~gRH~~is~i~l~Q~~~~lp~ 143 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGD---K-----K--LKSKILRQFF----N------------NGRHYNISIIFLSQSYFHLPP 143 (241)
T ss_pred hhcccCCCCCeEEEEeCCCC---c-----h--hhhHHHHHHH----h------------cccccceEEEEEeeecccCCH
Confidence 13478999999731 0 0 0123333333 2 123356889999999999999
Q ss_pred hhccCCcceEEEeC-CCHHHHHHHHHhhc
Q 012418 283 PLIRDGRMEKFYWA-PTREDRIGVCSGIF 310 (464)
Q Consensus 283 ALlRpGRfD~~i~i-P~~eeR~eIl~~~~ 310 (464)
.++. -++.++.+ -+..+...|++.+.
T Consensus 144 ~iR~--n~~y~i~~~~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 144 NIRS--NIDYFIIFNNSKRDLENIYRNMN 170 (241)
T ss_pred HHhh--cceEEEEecCcHHHHHHHHHhcc
Confidence 8743 57776655 44455555555443
No 407
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.41 E-value=0.0088 Score=61.41 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=25.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.|+++-..+.|+||||+|||.||..+|..
T Consensus 91 gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 91 GGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 37888899999999999999999998864
No 408
>PRK14974 cell division protein FtsY; Provisional
Probab=96.40 E-value=0.0076 Score=62.53 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|..++|.||||+|||+++..+|..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999988775
No 409
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0025 Score=68.38 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=35.0
Q ss_pred chhhhhHHHHHHHHhhhhC--CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 135 APAFMDKVVVHITKNFLNL--PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 135 ~~~~~d~~~~~i~Kn~l~~--~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+.|.|......+|.-+.. .|. ++||++|||||||||||+.+..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGg---HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGG---HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcC---CcEEEecCCCCchHHhhhhhcccC
Confidence 4567777777777777652 233 489999999999999999987643
No 410
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.39 E-value=0.0033 Score=59.79 Aligned_cols=28 Identities=39% Similarity=0.852 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..|..|.|.||+|||||+|+++|+..++
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577899999999999999999999883
No 411
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.38 E-value=0.0054 Score=67.60 Aligned_cols=137 Identities=15% Similarity=0.246 Sum_probs=70.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC--------CCCCChHHHHHHHH-----HHHHHHHHhCCcEEEEeccccccccC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN--------GNAGEPAKLIRQRY-----REAADIIKKGKMCCLFINDLDAGAGR 226 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~--------~~~Ge~~k~Ir~~F-----~~A~~~~~~~~P~ILfIDEIDal~~~ 226 (464)
..|||.|-||||||-+.|.+++-.... .-+|-+....+... -+| ..+-.....|.+|||+|++-..
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEa-GALVLADkGvClIDEFDKMndq 561 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEA-GALVLADKGVCLIDEFDKMNDQ 561 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeecc-CeEEEccCceEEeehhhhhccc
Confidence 579999999999999999998864332 11111111100000 000 0001223468889999998432
Q ss_pred CCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-------------CCchhhccCCcceEE
Q 012418 227 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRDGRMEKF 293 (464)
Q Consensus 227 r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-------------~LDpALlRpGRfD~~ 293 (464)
-. .+....|-+|-+. ++--|. ...-..+.-||+|+|... .|-.|+|. |||.+
T Consensus 562 DR----tSIHEAMEQQSIS--------ISKAGI-VtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlS--RFDiL 626 (854)
T KOG0477|consen 562 DR----TSIHEAMEQQSIS--------ISKAGI-VTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--RFDIL 626 (854)
T ss_pred cc----chHHHHHHhcchh--------hhhhhH-HHHHHhhhhhheecCCCCCccCCccchhhccccccchhh--hccee
Confidence 11 1111111111110 000011 001124456888888722 45567776 89987
Q ss_pred EeC-----CCHHHHHH--HHHhhcCC
Q 012418 294 YWA-----PTREDRIG--VCSGIFRT 312 (464)
Q Consensus 294 i~i-----P~~eeR~e--Il~~~~~~ 312 (464)
--+ |-.+++.+ ++..+.+.
T Consensus 627 cVvkD~vd~~~De~lA~fVV~Sh~r~ 652 (854)
T KOG0477|consen 627 CVVKDTVDPVQDEKLAKFVVGSHVRH 652 (854)
T ss_pred eeeecccCchhHHHHHHHHHHhHhhc
Confidence 663 77777743 35555543
No 412
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.38 E-value=0.0031 Score=57.20 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=24.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|.|+|+||+|||++|+.+++.+|.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~ 27 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLK 27 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 58899999999999999999999987
No 413
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.37 E-value=0.003 Score=60.57 Aligned_cols=29 Identities=24% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|+.+++.|+||+|||++|+.+|.++++.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~ 30 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAID 30 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCe
Confidence 36789999999999999999999999876
No 414
>PRK05439 pantothenate kinase; Provisional
Probab=96.37 E-value=0.0054 Score=63.03 Aligned_cols=40 Identities=35% Similarity=0.484 Sum_probs=33.0
Q ss_pred HHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 145 ~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
...+.|+.....+.|..|+|.|+||+|||++|+.++..++
T Consensus 72 ~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 72 AALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445566555777899999999999999999999998775
No 415
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.011 Score=54.57 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+...+.|.||.|+|||+|.++++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999999864
No 416
>PRK04328 hypothetical protein; Provisional
Probab=96.36 E-value=0.0089 Score=59.06 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
|++....+||+||||||||.||.-++.+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 7888899999999999999998876654
No 417
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.35 E-value=0.0084 Score=58.77 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=21.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHhC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg 184 (464)
|+|.|+||+|||++|+.++..+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 418
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.35 E-value=0.0039 Score=58.12 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
++-|+|.||+|+|||++++.+|+.++++
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~ 31 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNME 31 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCc
Confidence 4568999999999999999999999987
No 419
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=96.35 E-value=0.01 Score=64.05 Aligned_cols=131 Identities=16% Similarity=0.206 Sum_probs=74.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCC-ChHHHHH-HHHHHHH-----------HHHHhCCcEEEEe
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAG-EPAKLIR-QRYREAA-----------DIIKKGKMCCLFI 217 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~G-e~~k~Ir-~~F~~A~-----------~~~~~~~P~ILfI 217 (464)
+...-|||+|+.||||-.+|++|....... -+++ -++.++. ++|.... ..........|||
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfL 241 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFL 241 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEe
Confidence 344569999999999999999998875442 1222 2444443 4666221 1123445679999
Q ss_pred ccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEE----
Q 012418 218 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF---- 293 (464)
Q Consensus 218 DEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~---- 293 (464)
|||..+-- .++.-|++++...+..-+.|. ..-.-.|-||+|||+. |.. ....|||-.-
T Consensus 242 DEI~~mpl-------------~~Q~kLLRvLqe~~~~rvG~~--~~i~vdvRiIaaT~~d--L~~-~v~~G~FReDLyyR 303 (464)
T COG2204 242 DEIGEMPL-------------ELQVKLLRVLQEREFERVGGN--KPIKVDVRIIAATNRD--LEE-EVAAGRFREDLYYR 303 (464)
T ss_pred eccccCCH-------------HHHHHHHHHHHcCeeEecCCC--cccceeeEEEeecCcC--HHH-HHHcCCcHHHHHhh
Confidence 99965422 223335566653332223332 1123467899999983 333 4445666442
Q ss_pred -----EeCCCHHHH-HHH
Q 012418 294 -----YWAPTREDR-IGV 305 (464)
Q Consensus 294 -----i~iP~~eeR-~eI 305 (464)
+.+|...+| ..|
T Consensus 304 LnV~~i~iPpLRER~EDI 321 (464)
T COG2204 304 LNVVPLRLPPLRERKEDI 321 (464)
T ss_pred hccceecCCcccccchhH
Confidence 223766666 444
No 420
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.32 E-value=0.0038 Score=63.57 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..+.+|+.||+|+|||+++++++.++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999887
No 421
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.30 E-value=0.015 Score=58.91 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=43.6
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC---CCCChHHHHHH-HHHHHHHHHHhCCcEEEEecccccc
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGING---NAGEPAKLIRQ-RYREAADIIKKGKMCCLFINDLDAG 223 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---~~Ge~~k~Ir~-~F~~A~~~~~~~~P~ILfIDEIDal 223 (464)
+..+..+.++|+|+.|+|||++.+.|.+-+|-.. ........+.. .|..| ....-.+++.||++..
T Consensus 71 ~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~~f~~a----~l~gk~l~~~~E~~~~ 140 (304)
T TIGR01613 71 GNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEHRFGLA----RLEGKRAVIGDEVQKG 140 (304)
T ss_pred CCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCCCchhh----hhcCCEEEEecCCCCC
Confidence 3467779999999999999999999988887541 11111111212 45444 5444568888999743
No 422
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.29 E-value=0.0089 Score=67.69 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
++-.-+.|.|+.|||||+|+|.+.+-
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33344999999999999999999975
No 423
>PRK13975 thymidylate kinase; Provisional
Probab=96.29 E-value=0.0075 Score=56.32 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=24.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+-|.|.|++|+|||++++.+++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 578899999999999999999999853
No 424
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.26 E-value=0.0096 Score=58.07 Aligned_cols=26 Identities=31% Similarity=0.215 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+....++|+||.|.|||++.+.++.-
T Consensus 28 ~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 28 TSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred cCCcEEEEECCCCCchHHHHHHHHHH
Confidence 44568899999999999999988864
No 425
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.25 E-value=0.01 Score=59.05 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=26.6
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
.|++.....=|+||||||||.||--+|-...+
T Consensus 33 GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l 64 (256)
T PF08423_consen 33 GGIPTGSITEIVGESGSGKTQLCLQLAVNVQL 64 (256)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCCcEEEEEEecccccchHHHHHHHHhhc
Confidence 36777778889999999999999988876544
No 426
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.25 E-value=0.0075 Score=60.42 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++....+.|.||.|||||+|.|+++.-+.
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34456889999999999999999998653
No 427
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.24 E-value=0.017 Score=57.51 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+.+.-.+.|.||.|+|||+|.++++..+
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34555678999999999999999999874
No 428
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.24 E-value=0.0041 Score=59.27 Aligned_cols=26 Identities=35% Similarity=0.772 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+..|.|.||+|+|||+|+++++..+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36778999999999999999999876
No 429
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.24 E-value=0.0054 Score=63.45 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
+..+.+|+.||+|+|||++.+++..++.-
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 34568999999999999999999998643
No 430
>PTZ00202 tuzin; Provisional
Probab=96.24 E-value=0.022 Score=61.36 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=30.0
Q ss_pred HhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 148 Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+..+.......|+.+.|.||+|||||+|++.+...++..
T Consensus 275 r~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~ 313 (550)
T PTZ00202 275 RQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMP 313 (550)
T ss_pred HHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCce
Confidence 333333455567899999999999999999999877644
No 431
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.23 E-value=0.005 Score=64.08 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
++..+.+|+.||+|+|||++.++++.++.-
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 344568999999999999999999998653
No 432
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.23 E-value=0.0042 Score=58.58 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|.|.||+|+|||++|+.++..++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 47899999999999999999999854
No 433
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.22 E-value=0.01 Score=61.11 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.+.++|.|+||||||+|++.++..++.+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~ 189 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTT 189 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 3578999999999999999999998876
No 434
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.21 E-value=0.0093 Score=55.03 Aligned_cols=29 Identities=28% Similarity=0.113 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+.+...+.|.||.|+|||+|+++++..+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44556899999999999999999998753
No 435
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.20 E-value=0.018 Score=62.55 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
|++....+||+|+||+|||++|.-++.+
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~ 54 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVN 54 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 7888899999999999999999977654
No 436
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.20 E-value=0.0063 Score=63.96 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=39.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC-----C----------CCCCC------hHHHH---HHHHHHHHHHHHhCCcEEEE
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGI-----N----------GNAGE------PAKLI---RQRYREAADIIKKGKMCCLF 216 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~-----~----------~~~Ge------~~k~I---r~~F~~A~~~~~~~~P~ILf 216 (464)
.+|+.||+|+|||++.+++..++.. . ...+. ....+ ..-|..+...+-+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 4789999999999999999988742 1 11010 00000 01355454444577999999
Q ss_pred eccc
Q 012418 217 INDL 220 (464)
Q Consensus 217 IDEI 220 (464)
+.|+
T Consensus 231 vGEi 234 (372)
T TIGR02525 231 VGEI 234 (372)
T ss_pred eCCC
Confidence 9999
No 437
>PRK14529 adenylate kinase; Provisional
Probab=96.19 E-value=0.0043 Score=60.82 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=23.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|+|.||||+|||++|+.+|..+++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~ 27 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA 27 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Confidence 7889999999999999999999987
No 438
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.15 E-value=0.0083 Score=66.35 Aligned_cols=55 Identities=25% Similarity=0.203 Sum_probs=41.7
Q ss_pred CccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 130 ~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
.+..+|+.|+-.-+..++..+.. +..+.+..|.|+|+||||||++|+++|..++.
T Consensus 364 ~G~~pP~~f~rpeV~~iL~~~~~-~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 364 EGLEIPEWFSFPEVVAELRRTYP-PRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCCCCChhhcHHHHHHHHHHHhc-cccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 45566666766556666666654 34456678899999999999999999998876
No 439
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.15 E-value=0.0073 Score=60.39 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=39.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC-------------CCCCCh----HHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN-------------GNAGEP----AKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~-------------~~~Ge~----~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
.+++.||+|+|||++.+++..++.-+ ..-|.. ......-|..+...+-+..|.+|+|+||.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 48899999999999999998887422 000100 00011124444444467889999999993
No 440
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.15 E-value=0.005 Score=58.04 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++...++|.||+|+|||+|++.++..+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3557899999999999999999999875
No 441
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.14 E-value=0.01 Score=64.91 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++..-++|.||.|+|||+|+++++...
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3455679999999999999999999875
No 442
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.14 E-value=0.01 Score=65.17 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++..-+.|.||.|+|||+|++.+++..
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555789999999999999999999875
No 443
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.14 E-value=0.0091 Score=60.73 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+....+.|.||.|+|||+|.++++..+
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999999864
No 444
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.14 E-value=0.012 Score=55.39 Aligned_cols=66 Identities=23% Similarity=0.192 Sum_probs=42.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----CCCC-------C---hHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN----GNAG-------E---PAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----~~~G-------e---~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
+++...+.|.||.|+|||+|.++++..+... .+-| . ...-.+++..-|. +-...|.++++||--
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~lar--al~~~p~lllLDEPt 99 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAA--ALLRNATFYLFDEPS 99 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHH--HHhcCCCEEEEECCc
Confidence 4555689999999999999999999875332 1111 0 1111234444442 235679999999985
Q ss_pred cc
Q 012418 222 AG 223 (464)
Q Consensus 222 al 223 (464)
+.
T Consensus 100 s~ 101 (177)
T cd03222 100 AY 101 (177)
T ss_pred cc
Confidence 43
No 445
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.01 Score=61.92 Aligned_cols=28 Identities=25% Similarity=0.158 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.....+.|.||+|||||+|.++||...
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3444578999999999999999999863
No 446
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.12 E-value=0.0048 Score=56.97 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
.++|.||||+|||+++++++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999998754
No 447
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.12 E-value=0.0077 Score=66.20 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...++|.||.|+|||+|++.+++..
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4555689999999999999999999764
No 448
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.09 E-value=0.0095 Score=60.63 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=30.9
Q ss_pred HHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 147 ~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.+.|+.....+.|..|.|.||+|+|||++|+.+...+.
T Consensus 50 ~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 50 LEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455445567899999999999999999999988775
No 449
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.09 E-value=0.017 Score=64.10 Aligned_cols=28 Identities=25% Similarity=0.160 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.+++---+|+.||+|||||+|-|+||.-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4455578999999999999999999975
No 450
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.09 E-value=0.0059 Score=62.84 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=39.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC-CC----------------------CCCCChHHHHHHHHHHHHHHHHhCCcEE
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG-IN----------------------GNAGEPAKLIRQRYREAADIIKKGKMCC 214 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg-~~----------------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~I 214 (464)
..+.+++.||+|+|||+++++++.++- .+ .+.....-...++++.+ -+..|..
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~a----LR~~PD~ 222 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTT----LRMRPDR 222 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHH----hcCCCCE
Confidence 456899999999999999999998741 11 00000011123344443 6788999
Q ss_pred EEeccc
Q 012418 215 LFINDL 220 (464)
Q Consensus 215 LfIDEI 220 (464)
|++.|+
T Consensus 223 IivGEi 228 (319)
T PRK13894 223 ILVGEV 228 (319)
T ss_pred EEEecc
Confidence 999999
No 451
>PLN02459 probable adenylate kinase
Probab=96.09 E-value=0.0065 Score=60.95 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|.-++|.||||+|||++|+.+|+.+|+.
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~ 56 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVP 56 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 3447788999999999999999999987
No 452
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.06 E-value=0.035 Score=54.41 Aligned_cols=110 Identities=16% Similarity=0.127 Sum_probs=70.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhC--------------------------CC-----------------CCCCC
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG--------------------------IN-----------------GNAGE 191 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg--------------------------~~-----------------~~~Ge 191 (464)
|++.+.-+|+-|+-|||||-|+..++.=+- .+ ..+..
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~ 103 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNW 103 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccccc
Confidence 689999999999999999999999986421 11 12222
Q ss_pred hHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEE
Q 012418 192 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271 (464)
Q Consensus 192 ~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VI 271 (464)
..+.-+.+++...+.++.....||+||-++.++...+ .+.+.+++..+-. . .+..+ +|
T Consensus 104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~--------~~~vl~fm~~~r~---------l---~d~gK--vI 161 (235)
T COG2874 104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDS--------EDAVLNFMTFLRK---------L---SDLGK--VI 161 (235)
T ss_pred ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhccc--------HHHHHHHHHHHHH---------H---HhCCC--EE
Confidence 3344455666666666777789999999998876531 1344444433322 1 11222 44
Q ss_pred EEeCCCCCCchhhcc
Q 012418 272 VTGNDFSTLYAPLIR 286 (464)
Q Consensus 272 aTTN~~~~LDpALlR 286 (464)
+-|=+|+.++++++-
T Consensus 162 ilTvhp~~l~e~~~~ 176 (235)
T COG2874 162 ILTVHPSALDEDVLT 176 (235)
T ss_pred EEEeChhhcCHHHHH
Confidence 445578889988764
No 453
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.06 E-value=0.0051 Score=64.13 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.+.|.||+|||||++-|+||.-
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999975
No 454
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.05 E-value=0.0064 Score=56.10 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.+..+.|.|+||+|||++|+.++..+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999999999773
No 455
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.05 E-value=0.022 Score=53.96 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...+.|.||.|+|||+|.++|+...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445679999999999999999999764
No 456
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.04 E-value=0.005 Score=66.48 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=65.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC-------CCCCChHHHH-HHHHHHH---HHHH--------HhCCcEEEEe
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------GNAGEPAKLI-RQRYREA---ADII--------KKGKMCCLFI 217 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------~~~Ge~~k~I-r~~F~~A---~~~~--------~~~~P~ILfI 217 (464)
+....|||.|..||||-..|++|-...... .-.--++.++ .++|..- |.-+ ......-||+
T Consensus 244 ~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFL 323 (550)
T COG3604 244 KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFL 323 (550)
T ss_pred cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEec
Confidence 455689999999999999999998775433 1111122222 2344321 0000 1224568999
Q ss_pred ccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcce
Q 012418 218 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 291 (464)
Q Consensus 218 DEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD 291 (464)
|||.-+-- .++.-|++.+.+-..--+.|. ..-.-.|-||++||+ +|-.+ .|.|+|-
T Consensus 324 DEIGelPL-------------~lQaKLLRvLQegEieRvG~~--r~ikVDVRiIAATNR--DL~~~-V~~G~FR 379 (550)
T COG3604 324 DEIGELPL-------------ALQAKLLRVLQEGEIERVGGD--RTIKVDVRVIAATNR--DLEEM-VRDGEFR 379 (550)
T ss_pred hhhccCCH-------------HHHHHHHHHHhhcceeecCCC--ceeEEEEEEEeccch--hHHHH-HHcCcch
Confidence 99964422 233446666653322222332 011245789999998 24343 4567764
No 457
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.04 E-value=0.0068 Score=62.56 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+.+|+.|++|+|||++.++++.++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999987
No 458
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.03 E-value=0.021 Score=62.78 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++..-++|.|+.|||||+|++.++...
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4555689999999999999999999874
No 459
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.02 E-value=0.017 Score=59.40 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+.|..++|.||+|+|||+++..+|..+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4578999999999999999999999874
No 460
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.01 E-value=0.0073 Score=62.46 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 57899999999999999999998
No 461
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.00 E-value=0.041 Score=58.96 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..|..++|.||+|+|||++|..+|..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999876
No 462
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.015 Score=56.86 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
-|+|+|+||+|||++|+-+|++|.-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 3689999999999999999999853
No 463
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.99 E-value=0.017 Score=61.22 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.+-|+|.|++|||||+|++++|..+|..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 3678999999999999999999998876
No 464
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.99 E-value=0.0069 Score=59.85 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=38.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC---------------------CC-CCChHHHHHHHHHHHHHHHHhCCcEE
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------------GN-AGEPAKLIRQRYREAADIIKKGKMCC 214 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~---------------------~~-~Ge~~k~Ir~~F~~A~~~~~~~~P~I 214 (464)
+....+|+.||+|+|||++.+++..++.-. .. .........+.+..+ -+..|.+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~----LR~~pD~ 200 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSA----LRQDPDV 200 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHH----TTS--SE
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHH----hcCCCCc
Confidence 445689999999999999999999986332 00 000111122333333 5678999
Q ss_pred EEecccc
Q 012418 215 LFINDLD 221 (464)
Q Consensus 215 LfIDEID 221 (464)
|+|.||-
T Consensus 201 iiigEiR 207 (270)
T PF00437_consen 201 IIIGEIR 207 (270)
T ss_dssp EEESCE-
T ss_pred ccccccC
Confidence 9999993
No 465
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.98 E-value=0.025 Score=55.69 Aligned_cols=24 Identities=25% Similarity=0.050 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.+.++|+||...|||++.|.|+--
T Consensus 43 ~~~~iiTGpN~sGKSt~lk~i~~~ 66 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFLKQIGLI 66 (235)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH
T ss_pred eeEEEEeCCCccchhhHHHHHHHH
Confidence 468999999999999999999865
No 466
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.95 E-value=0.014 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|.|.||+|+|||++++.+++.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999998
No 467
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.95 E-value=0.015 Score=62.48 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..|..++|+|+||+|||++|..+|..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 458899999999999999999999876
No 468
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.95 E-value=0.022 Score=63.92 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+++..-+.|.||.|||||+|++.+++..
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556789999999999999999999874
No 469
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.95 E-value=0.021 Score=57.76 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...+.|.||.|+|||+|.++++..+
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445678999999999999999999764
No 470
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.94 E-value=0.025 Score=52.68 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..++..++|.|+||+|||++|+.++..+
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567799999999999999999999997
No 471
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.93 E-value=0.021 Score=57.37 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+.|+.++|.||||+|||+++..+|..+
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3457889999999999999999999876
No 472
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.92 E-value=0.0097 Score=60.22 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.+...+.|.||.|+|||+|.++++..+
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444578999999999999999999763
No 473
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.92 E-value=0.0052 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+.++|.||+|+|||+|++.+++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 4689999999999999999999753
No 474
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.025 Score=65.18 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=81.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC---CC--------------------CCCCChHHHHHHHHHHHHHHHH-hCCcEEE
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMG---IN--------------------GNAGEPAKLIRQRYREAADIIK-KGKMCCL 215 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg---~~--------------------~~~Ge~~k~Ir~~F~~A~~~~~-~~~P~IL 215 (464)
+-=+|.|.||.|||.+++-+|+..- ++ ++.|+.+..++.+..++ . .+...||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v----~~~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEV----ESGGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHH----hcCCCcEEE
Confidence 3447889999999999999998842 11 56677777777777766 5 5567899
Q ss_pred EeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC-----CCCchhhccCCcc
Q 012418 216 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGRM 290 (464)
Q Consensus 216 fIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~-----~~LDpALlRpGRf 290 (464)
||||+..+.+.... +. ....++ .|--++ .++.+-+|+||-.. -.=||+|=| ||
T Consensus 285 figelh~lvg~g~~---~~-~~d~~n-lLkp~L---------------~rg~l~~IGatT~e~Y~k~iekdPalEr--rw 342 (898)
T KOG1051|consen 285 FLGELHWLVGSGSN---YG-AIDAAN-LLKPLL---------------ARGGLWCIGATTLETYRKCIEKDPALER--RW 342 (898)
T ss_pred EecceeeeecCCCc---ch-HHHHHH-hhHHHH---------------hcCCeEEEecccHHHHHHHHhhCcchhh--Cc
Confidence 99999998776441 11 111222 221111 12336677766521 234799988 89
Q ss_pred eEEEe-CCCHHHHHHHHHhh
Q 012418 291 EKFYW-APTREDRIGVCSGI 309 (464)
Q Consensus 291 D~~i~-iP~~eeR~eIl~~~ 309 (464)
+.+.- +|+.++-..|++..
T Consensus 343 ~l~~v~~pS~~~~~~iL~~l 362 (898)
T KOG1051|consen 343 QLVLVPIPSVENLSLILPGL 362 (898)
T ss_pred ceeEeccCcccchhhhhhhh
Confidence 98766 59988866665543
No 475
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.91 E-value=0.019 Score=62.12 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++..-+.|.||.|+|||+|++.+++..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555789999999999999999998663
No 476
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.013 Score=58.18 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..--.+.|.|++|||||+|++++|.-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 33447889999999999999999965
No 477
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.90 E-value=0.042 Score=58.17 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=43.9
Q ss_pred HhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccc
Q 012418 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 220 (464)
Q Consensus 148 Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEI 220 (464)
..+.......++ .++|+||-+||||++.+.+...+.-. ...-.... +.+.+..-. .+.....+.||||||
T Consensus 27 ~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~-l~d~~~~~~-~~~~~~~~yifLDEI 103 (398)
T COG1373 27 PRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIE-LLDLLRAYI-ELKEREKSYIFLDEI 103 (398)
T ss_pred HHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhh-HHHHHHHHH-HhhccCCceEEEecc
Confidence 333344445555 99999999999999998888776332 11111111 122222221 112225589999999
Q ss_pred cccccC
Q 012418 221 DAGAGR 226 (464)
Q Consensus 221 Dal~~~ 226 (464)
..+-++
T Consensus 104 q~v~~W 109 (398)
T COG1373 104 QNVPDW 109 (398)
T ss_pred cCchhH
Confidence 766443
No 478
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.90 E-value=0.02 Score=59.31 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.+...+.|.||.|+|||+|.++|+..+
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3444689999999999999999999864
No 479
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.89 E-value=0.025 Score=57.39 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
....+..++|.||||+|||+++..++..+
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44567889999999999999999999875
No 480
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.88 E-value=0.018 Score=59.91 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.....+.|.||+|||||+|.++||...
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 344578999999999999999999864
No 481
>PRK10867 signal recognition particle protein; Provisional
Probab=95.87 E-value=0.025 Score=60.72 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+|..+++.||+|+|||++|.-+|..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 458899999999999999888888754
No 482
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.87 E-value=0.041 Score=52.07 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=65.8
Q ss_pred EEEEcCCCccHHHHHHHHHHHh---CCC---------C-CCCC---------------------------hHHHHHHHHH
Q 012418 162 LGIWGGKGQGKSFQCELVFAKM---GIN---------G-NAGE---------------------------PAKLIRQRYR 201 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~el---g~~---------~-~~Ge---------------------------~~k~Ir~~F~ 201 (464)
|.+|+++|.|||+.|-.+|-.+ |.+ . ..|| .....++.+.
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~ 87 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAWQ 87 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHHH
Confidence 5688899999999999998763 222 1 1233 1134566777
Q ss_pred HHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCc
Q 012418 202 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 281 (464)
Q Consensus 202 ~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LD 281 (464)
.|.+.+......+|+||||-......- .+. ..|..+| . .....+=||+|...+ |
T Consensus 88 ~a~~~l~~~~~DlvVLDEi~~A~~~gl-i~~-----~~v~~lL----~-------------~rp~~~evVlTGR~~---p 141 (173)
T TIGR00708 88 HAKEMLADPELDLVLLDELTYALKYGY-LDV-----EEVVEAL----Q-------------ERPGHQHVIITGRGC---P 141 (173)
T ss_pred HHHHHHhcCCCCEEEehhhHHHHHCCC-cCH-----HHHHHHH----H-------------hCCCCCEEEEECCCC---C
Confidence 777777778889999999964433211 111 2333333 3 233456799999874 7
Q ss_pred hhhccCCcceEEEe
Q 012418 282 APLIRDGRMEKFYW 295 (464)
Q Consensus 282 pALlRpGRfD~~i~ 295 (464)
+.|+- .-|.+-+
T Consensus 142 ~~l~e--~AD~VTE 153 (173)
T TIGR00708 142 QDLLE--LADLVTE 153 (173)
T ss_pred HHHHH--hCceeee
Confidence 77764 4555433
No 483
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.86 E-value=0.016 Score=62.70 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++..-+.|.||.|+|||+|++.+++..
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555689999999999999999999764
No 484
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.86 E-value=0.012 Score=56.05 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=24.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|.|+|++|+|||++|+.+++.+|++
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~ 28 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIP 28 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 58999999999999999999988887
No 485
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.86 E-value=0.0045 Score=69.27 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+.++|+||||||||++|++++..+.
T Consensus 51 ~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 51 RHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 4799999999999999999999875
No 486
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.85 E-value=0.0069 Score=57.02 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=20.8
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 012418 162 LGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~el 183 (464)
+.|.||+|||||+++++++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987
No 487
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.85 E-value=0.017 Score=63.33 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=38.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC----CCCCChHHHHHHHHHHHHHHHHhCCcEEE
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN----GNAGEPAKLIRQRYREAADIIKKGKMCCL 215 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----~~~Ge~~k~Ir~~F~~A~~~~~~~~P~IL 215 (464)
..|.-|++.|+||+|||++|+.++...|.. ...|. .......|.+.++.+.+.||
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~----~~~~~~~a~~~L~~G~sVVI 425 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS----TQNCLTACERALDQGKRCAI 425 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH----HHHHHHHHHHHHhCCCcEEE
Confidence 467899999999999999999999987765 22222 22334445555667776444
No 488
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.83 E-value=0.034 Score=55.34 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.-..+.+.||+|||||+|-|.|...+
T Consensus 32 ~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 32 PRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred cCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 344678899999999999999999764
No 489
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.81 E-value=0.02 Score=59.74 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
..|..+.|.||.|||||++.++|...+..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 56678899999999999999999888643
No 490
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=95.80 E-value=0.029 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
.-.|+||.|+|||.+..||+-.++.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~ 48 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGG 48 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCc
Confidence 6679999999999999999877653
No 491
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.03 Score=62.78 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
-++|-+.+-|.||.|.|||++|..+=+-
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4566689999999999999999998765
No 492
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.76 E-value=0.01 Score=53.11 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCCCCCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGE 191 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~~Ge 191 (464)
+....|+|+|+=|.|||+++|.++..+|....+..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~S 47 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDEEVTS 47 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCC
Confidence 45578999999999999999999999998743333
No 493
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.75 E-value=0.014 Score=58.73 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++.-..+.|.|.+|||||+++++|..-..
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 45556899999999999999999987654
No 494
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.74 E-value=0.018 Score=54.58 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
...|+.++|.|+||+|||+++..+..++
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence 4789999999999999999999999988
No 495
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.73 E-value=0.0093 Score=57.14 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
...|+.++|.||+|||||+|++.+.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 356788999999999999999999754
No 496
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.72 E-value=0.033 Score=60.44 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=25.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
|++....+||+||||+|||+++..++.+.
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~ 297 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAA 297 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 77778899999999999999999988663
No 497
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.71 E-value=0.012 Score=54.87 Aligned_cols=24 Identities=42% Similarity=0.717 Sum_probs=22.5
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|+|+|+||+|||++++.+++ +|++
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~ 25 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIP 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCC
Confidence 78999999999999999998 8887
No 498
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.71 E-value=0.024 Score=61.37 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=26.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|+.+...+||.||||+|||+|+--++.+.
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~ 287 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENA 287 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 378888999999999999999999988864
No 499
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.70 E-value=0.021 Score=62.25 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...++|.||.|+|||+|.+++++..
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4556689999999999999999999874
No 500
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=95.68 E-value=0.022 Score=62.30 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++..-++|.||.|+|||+|++++++.+
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4555689999999999999999999875
Done!