Query 012418
Match_columns 464
No_of_seqs 403 out of 2434
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t15_A Ribulose bisphosphate c 100.0 5.5E-53 1.9E-57 419.1 23.3 282 124-405 1-293 (293)
2 4b4t_J 26S protease regulatory 100.0 1.3E-39 4.6E-44 338.0 21.4 199 122-334 144-360 (405)
3 4b4t_I 26S protease regulatory 100.0 1.9E-38 6.5E-43 331.2 20.0 198 123-334 179-394 (437)
4 4b4t_H 26S protease regulatory 100.0 4.8E-38 1.7E-42 330.7 21.6 199 122-334 205-421 (467)
5 4b4t_M 26S protease regulatory 100.0 3.1E-38 1.1E-42 330.8 18.3 199 122-334 177-393 (434)
6 4b4t_L 26S protease subunit RP 100.0 5.6E-38 1.9E-42 329.2 17.7 199 122-334 177-393 (437)
7 4b4t_K 26S protease regulatory 100.0 4.5E-37 1.5E-41 321.6 16.1 196 123-334 169-385 (428)
8 3cf2_A TER ATPase, transitiona 100.0 6.7E-37 2.3E-41 341.0 6.0 237 154-409 506-765 (806)
9 3cf2_A TER ATPase, transitiona 100.0 8.4E-33 2.9E-37 308.1 21.2 211 122-352 200-428 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.2E-28 4.1E-33 247.5 22.2 210 122-352 8-236 (322)
11 3cf0_A Transitional endoplasmi 100.0 1.6E-28 5.6E-33 243.5 19.2 197 122-334 11-227 (301)
12 2x8a_A Nuclear valosin-contain 100.0 6.3E-29 2.1E-33 244.7 15.5 195 123-334 7-224 (274)
13 3eie_A Vacuolar protein sortin 100.0 2.1E-28 7.2E-33 244.5 18.9 213 121-354 13-243 (322)
14 2ce7_A Cell division protein F 100.0 1.4E-28 4.9E-33 260.5 15.8 197 121-335 11-228 (476)
15 2qp9_X Vacuolar protein sortin 100.0 6.9E-27 2.4E-31 237.7 23.2 209 122-351 47-273 (355)
16 3h4m_A Proteasome-activating n 99.9 1.7E-26 5.9E-31 224.2 17.4 199 122-334 13-229 (285)
17 2qz4_A Paraplegin; AAA+, SPG7, 99.9 7.7E-27 2.6E-31 222.9 13.7 165 154-334 34-220 (262)
18 1lv7_A FTSH; alpha/beta domain 99.9 3.7E-26 1.3E-30 219.7 18.1 196 121-334 7-223 (257)
19 2dhr_A FTSH; AAA+ protein, hex 99.9 1.1E-26 3.7E-31 247.4 14.1 197 121-335 26-243 (499)
20 2zan_A Vacuolar protein sortin 99.9 3.3E-26 1.1E-30 239.5 17.3 177 155-352 163-358 (444)
21 1ixz_A ATP-dependent metallopr 99.9 4.4E-25 1.5E-29 211.9 16.3 197 121-334 11-227 (254)
22 3hu3_A Transitional endoplasmi 99.9 1.9E-24 6.6E-29 229.4 19.8 164 154-334 233-413 (489)
23 3thg_A Ribulose bisphosphate c 99.9 5.8E-25 2E-29 186.5 10.1 103 297-399 5-107 (107)
24 2r62_A Cell division protease 99.9 4.8E-26 1.6E-30 219.5 3.6 197 121-333 6-223 (268)
25 3d8b_A Fidgetin-like protein 1 99.9 7.1E-24 2.4E-28 215.3 19.3 163 156-335 114-294 (357)
26 1ypw_A Transitional endoplasmi 99.9 3.1E-26 1.1E-30 256.0 1.7 165 154-334 506-689 (806)
27 1iy2_A ATP-dependent metallopr 99.9 6.6E-24 2.3E-28 207.1 17.4 193 121-334 35-251 (278)
28 3b9p_A CG5977-PA, isoform A; A 99.9 6.8E-24 2.3E-28 207.4 17.2 162 157-334 52-231 (297)
29 3vfd_A Spastin; ATPase, microt 99.9 1.6E-23 5.6E-28 214.3 20.7 162 157-335 146-325 (389)
30 1ypw_A Transitional endoplasmi 99.9 7.3E-21 2.5E-25 212.8 20.6 199 120-335 198-414 (806)
31 2c9o_A RUVB-like 1; hexameric 99.8 2.5E-22 8.5E-27 210.3 -5.0 163 154-334 58-258 (456)
32 1d2n_A N-ethylmaleimide-sensit 99.8 2.7E-18 9.1E-23 166.4 14.7 162 148-327 53-229 (272)
33 3syl_A Protein CBBX; photosynt 99.7 2.2E-16 7.5E-21 154.5 14.7 133 156-314 64-221 (309)
34 3m6a_A ATP-dependent protease 99.7 2.4E-16 8.1E-21 169.1 13.5 155 158-329 107-297 (543)
35 3uk6_A RUVB-like 2; hexameric 99.7 4.5E-15 1.5E-19 148.6 20.2 130 155-313 66-275 (368)
36 1g41_A Heat shock protein HSLU 99.7 8.6E-17 2.9E-21 169.0 7.7 123 158-306 49-188 (444)
37 1jbk_A CLPB protein; beta barr 99.6 9.8E-16 3.3E-20 136.4 9.3 124 157-306 41-194 (195)
38 1ofh_A ATP-dependent HSL prote 99.6 9.4E-16 3.2E-20 149.0 9.6 146 157-308 48-213 (310)
39 3pfi_A Holliday junction ATP-d 99.6 8.4E-15 2.9E-19 145.4 16.4 152 157-329 53-218 (338)
40 3hws_A ATP-dependent CLP prote 99.6 9.7E-16 3.3E-20 154.9 5.1 149 157-308 49-267 (363)
41 1hqc_A RUVB; extended AAA-ATPa 99.6 1.3E-14 4.5E-19 142.5 11.5 153 157-329 36-205 (324)
42 2chg_A Replication factor C sm 99.5 7.3E-14 2.5E-18 127.1 14.6 122 161-311 40-175 (226)
43 2p65_A Hypothetical protein PF 99.5 2.6E-14 8.8E-19 127.5 10.1 113 157-296 41-183 (187)
44 3u61_B DNA polymerase accessor 99.5 5.2E-14 1.8E-18 139.1 12.1 142 124-306 24-174 (324)
45 3pvs_A Replication-associated 99.5 1.1E-13 3.6E-18 145.4 14.4 123 160-312 51-180 (447)
46 1njg_A DNA polymerase III subu 99.5 2.3E-13 7.7E-18 124.8 13.2 143 157-328 43-221 (250)
47 3pxg_A Negative regulator of g 99.5 1.7E-13 5.8E-18 144.2 13.8 133 158-329 200-366 (468)
48 1l8q_A Chromosomal replication 99.5 1.2E-13 4.1E-18 136.9 11.3 170 122-323 7-194 (324)
49 4fcw_A Chaperone protein CLPB; 99.5 4.8E-13 1.6E-17 130.6 15.0 134 158-310 46-229 (311)
50 3pxi_A Negative regulator of g 99.5 3E-13 1E-17 149.6 14.6 117 157-312 199-340 (758)
51 1qvr_A CLPB protein; coiled co 99.5 2.4E-13 8.2E-18 152.6 13.9 126 158-310 190-345 (854)
52 1sxj_B Activator 1 37 kDa subu 99.4 1E-12 3.6E-17 127.9 14.1 159 145-335 31-209 (323)
53 1r6b_X CLPA protein; AAA+, N-t 99.4 9.1E-13 3.1E-17 145.5 15.3 127 158-310 206-362 (758)
54 1sxj_D Activator 1 41 kDa subu 99.4 9.8E-13 3.4E-17 130.2 11.7 144 162-334 61-234 (353)
55 1um8_A ATP-dependent CLP prote 99.4 6.9E-13 2.4E-17 134.4 10.7 129 157-286 70-220 (376)
56 2z4s_A Chromosomal replication 99.4 1.5E-12 5.2E-17 136.0 13.3 157 121-311 100-277 (440)
57 2v1u_A Cell division control p 99.4 7.3E-12 2.5E-16 124.5 17.5 155 157-333 42-247 (387)
58 3te6_A Regulatory protein SIR3 99.4 1.2E-12 4.2E-17 132.0 11.6 126 156-310 42-211 (318)
59 2chq_A Replication factor C sm 99.4 2.2E-12 7.6E-17 125.4 13.1 150 144-327 26-193 (319)
60 1iqp_A RFCS; clamp loader, ext 99.4 2.5E-12 8.4E-17 125.5 12.4 145 161-334 48-211 (327)
61 2qby_B CDC6 homolog 3, cell di 99.4 2.1E-11 7.1E-16 122.0 18.5 145 157-329 43-236 (384)
62 1g8p_A Magnesium-chelatase 38 99.3 2.5E-12 8.7E-17 127.3 9.8 134 160-309 46-231 (350)
63 3pxi_A Negative regulator of g 99.3 6.6E-12 2.3E-16 138.9 14.1 128 158-310 519-675 (758)
64 3bos_A Putative DNA replicatio 99.3 8.4E-13 2.9E-17 122.6 5.7 151 143-326 39-205 (242)
65 1r6b_X CLPA protein; AAA+, N-t 99.3 4.1E-12 1.4E-16 140.2 12.1 131 160-311 489-667 (758)
66 1jr3_A DNA polymerase III subu 99.3 8.6E-12 3E-16 124.3 13.3 148 157-333 36-219 (373)
67 1sxj_A Activator 1 95 kDa subu 99.3 1.4E-11 4.6E-16 131.0 14.9 140 157-326 75-243 (516)
68 2qby_A CDC6 homolog 1, cell di 99.3 6.4E-11 2.2E-15 117.4 17.3 152 157-334 43-244 (386)
69 1a5t_A Delta prime, HOLB; zinc 99.3 1.1E-11 3.7E-16 124.4 11.7 146 156-333 21-203 (334)
70 1sxj_E Activator 1 40 kDa subu 99.3 3.1E-11 1E-15 120.1 14.7 166 124-329 12-231 (354)
71 1in4_A RUVB, holliday junction 99.3 3.8E-11 1.3E-15 120.5 15.4 156 157-333 49-221 (334)
72 3f9v_A Minichromosome maintena 99.2 6.4E-13 2.2E-17 144.1 0.1 136 160-312 328-492 (595)
73 1sxj_C Activator 1 40 kDa subu 99.2 5.8E-11 2E-15 118.7 13.4 141 143-315 33-187 (340)
74 4akg_A Glutathione S-transfera 99.2 8E-12 2.7E-16 153.7 7.8 137 158-310 1266-1431(2695)
75 2r44_A Uncharacterized protein 99.2 5.4E-12 1.9E-16 125.2 3.6 136 160-312 47-200 (331)
76 3ec2_A DNA replication protein 99.2 8.8E-11 3E-15 106.4 11.0 98 120-223 4-112 (180)
77 1fnn_A CDC6P, cell division co 99.2 2.7E-10 9.4E-15 113.6 14.6 142 160-325 45-228 (389)
78 1qvr_A CLPB protein; coiled co 99.2 1.3E-10 4.5E-15 130.5 13.5 131 160-310 589-770 (854)
79 2bjv_A PSP operon transcriptio 99.1 1.1E-11 3.9E-16 119.1 2.3 129 158-303 28-183 (265)
80 3nbx_X ATPase RAVA; AAA+ ATPas 99.1 4.6E-11 1.6E-15 127.3 7.2 129 160-310 42-196 (500)
81 2gno_A DNA polymerase III, gam 99.1 3.3E-10 1.1E-14 113.2 10.4 156 144-335 6-173 (305)
82 3cmw_A Protein RECA, recombina 99.0 6.9E-11 2.3E-15 140.5 4.6 105 158-279 1079-1220(1706)
83 3n70_A Transport activator; si 99.0 3.9E-10 1.3E-14 99.6 7.5 96 158-291 23-127 (145)
84 3co5_A Putative two-component 99.0 7.2E-11 2.5E-15 104.3 1.4 87 158-277 26-116 (143)
85 2w58_A DNAI, primosome compone 98.9 2.2E-09 7.6E-14 98.6 9.3 63 117-184 16-79 (202)
86 1ojl_A Transcriptional regulat 98.9 1.5E-09 5E-14 108.0 8.5 129 157-302 23-178 (304)
87 2qgz_A Helicase loader, putati 98.9 1.9E-09 6.5E-14 107.5 6.5 63 117-184 115-177 (308)
88 1tue_A Replication protein E1; 98.8 2.5E-09 8.4E-14 102.1 5.8 124 144-293 45-174 (212)
89 1w5s_A Origin recognition comp 98.8 5.4E-08 1.9E-12 97.9 14.5 158 158-334 49-265 (412)
90 2vhj_A Ntpase P4, P4; non- hyd 98.8 6.9E-09 2.4E-13 105.1 7.0 112 154-284 118-242 (331)
91 1svm_A Large T antigen; AAA+ f 98.7 9.3E-09 3.2E-13 105.9 6.8 120 155-300 165-286 (377)
92 2kjq_A DNAA-related protein; s 98.6 2.6E-08 9E-13 89.1 6.0 51 158-223 35-95 (149)
93 3k1j_A LON protease, ATP-depen 98.6 7.8E-08 2.7E-12 104.0 8.1 26 160-185 61-86 (604)
94 3cmu_A Protein RECA, recombina 98.5 1.2E-07 4.2E-12 114.2 8.6 91 155-249 1423-1548(2050)
95 2r2a_A Uncharacterized protein 98.4 3E-07 1E-11 86.5 7.8 115 158-296 4-150 (199)
96 1u0j_A DNA replication protein 98.4 3.1E-07 1.1E-11 90.5 6.9 41 144-186 90-131 (267)
97 2qen_A Walker-type ATPase; unk 98.3 4.7E-06 1.6E-10 81.3 12.7 149 160-330 32-241 (350)
98 3vkg_A Dynein heavy chain, cyt 98.2 7.8E-07 2.7E-11 111.1 5.8 136 159-309 1304-1468(3245)
99 2fna_A Conserved hypothetical 98.2 1.7E-05 5.9E-10 77.3 14.1 146 160-330 31-245 (357)
100 4akg_A Glutathione S-transfera 98.2 5.4E-06 1.8E-10 102.8 12.2 135 158-306 644-789 (2695)
101 2cvh_A DNA repair and recombin 97.9 3.2E-05 1.1E-09 70.9 8.6 30 155-184 16-45 (220)
102 3f8t_A Predicted ATPase involv 97.8 8.5E-06 2.9E-10 86.4 3.6 121 161-301 241-385 (506)
103 2zr9_A Protein RECA, recombina 97.8 1.9E-05 6.5E-10 80.2 5.6 72 154-225 56-153 (349)
104 1n0w_A DNA repair protein RAD5 97.8 5.8E-05 2E-09 70.2 8.3 30 154-183 19-48 (243)
105 2ehv_A Hypothetical protein PH 97.8 7.8E-05 2.7E-09 69.5 9.1 27 155-181 26-52 (251)
106 3hr8_A Protein RECA; alpha and 97.8 2.7E-05 9.4E-10 79.5 6.4 72 154-225 56-153 (356)
107 3cmu_A Protein RECA, recombina 97.7 7.7E-05 2.6E-09 90.4 10.5 110 155-276 728-868 (2050)
108 1ye8_A Protein THEP1, hypothet 97.7 6.7E-05 2.3E-09 68.8 7.8 26 161-186 2-27 (178)
109 1xp8_A RECA protein, recombina 97.7 7.9E-05 2.7E-09 76.3 8.8 72 154-225 69-166 (366)
110 1ny5_A Transcriptional regulat 97.7 9.5E-05 3.2E-09 75.7 9.3 125 160-302 161-313 (387)
111 4a74_A DNA repair and recombin 97.6 6.9E-05 2.4E-09 69.0 6.7 31 154-184 20-50 (231)
112 2w0m_A SSO2452; RECA, SSPF, un 97.6 9.3E-05 3.2E-09 67.9 7.4 29 155-183 19-47 (235)
113 1u94_A RECA protein, recombina 97.6 6.1E-05 2.1E-09 76.7 6.3 72 154-225 58-155 (356)
114 3dzd_A Transcriptional regulat 97.5 0.0001 3.4E-09 75.1 7.0 124 161-302 154-304 (368)
115 2rhm_A Putative kinase; P-loop 97.5 7.4E-05 2.5E-09 67.1 4.8 32 155-186 1-32 (193)
116 1jr3_D DNA polymerase III, del 97.5 0.00051 1.8E-08 68.1 11.0 141 157-328 16-175 (343)
117 2z43_A DNA repair and recombin 97.5 0.00014 4.7E-09 72.4 6.8 30 154-183 102-131 (324)
118 3kw6_A 26S protease regulatory 97.4 0.00039 1.3E-08 55.2 7.7 39 296-334 2-44 (78)
119 3umf_A Adenylate kinase; rossm 97.4 0.0001 3.6E-09 70.1 4.5 33 154-186 24-56 (217)
120 1v5w_A DMC1, meiotic recombina 97.4 0.00048 1.6E-08 69.3 9.5 30 154-183 117-146 (343)
121 3trf_A Shikimate kinase, SK; a 97.4 0.00011 3.8E-09 65.9 4.4 29 158-186 4-32 (185)
122 4gp7_A Metallophosphoesterase; 97.3 0.00035 1.2E-08 62.9 6.8 21 157-177 7-27 (171)
123 1pzn_A RAD51, DNA repair and r 97.3 0.00039 1.3E-08 70.3 7.7 30 154-183 126-155 (349)
124 3lda_A DNA repair protein RAD5 97.3 0.00043 1.5E-08 71.6 8.2 30 154-183 173-202 (400)
125 3vkg_A Dynein heavy chain, cyt 97.3 0.0014 4.8E-08 82.6 14.0 134 159-306 604-749 (3245)
126 1qhx_A CPT, protein (chloramph 97.3 0.00015 5.3E-09 64.4 4.1 28 159-186 3-30 (178)
127 1gvn_B Zeta; postsegregational 97.3 0.00032 1.1E-08 68.9 6.8 46 139-184 12-58 (287)
128 3vaa_A Shikimate kinase, SK; s 97.3 0.00017 6E-09 66.1 4.5 31 156-186 22-52 (199)
129 3io5_A Recombination and repai 97.3 0.00018 6.1E-09 72.8 4.7 94 154-248 24-155 (333)
130 2zts_A Putative uncharacterize 97.2 0.00031 1.1E-08 65.3 5.6 28 155-182 26-53 (251)
131 2i1q_A DNA repair and recombin 97.2 0.00052 1.8E-08 67.8 7.6 30 154-183 93-122 (322)
132 3iij_A Coilin-interacting nucl 97.2 0.00024 8.2E-09 63.6 4.5 31 156-186 8-38 (180)
133 1kag_A SKI, shikimate kinase I 97.2 0.0002 6.9E-09 63.4 3.7 28 159-186 4-31 (173)
134 1z6t_A APAF-1, apoptotic prote 97.2 0.0033 1.1E-07 66.6 13.7 24 158-181 146-169 (591)
135 2cdn_A Adenylate kinase; phosp 97.2 0.0003 1E-08 64.2 4.9 31 156-186 17-47 (201)
136 2krk_A 26S protease regulatory 97.2 0.00029 9.8E-09 57.6 4.2 39 296-334 10-52 (86)
137 1tev_A UMP-CMP kinase; ploop, 97.2 0.00025 8.6E-09 63.4 4.2 28 159-186 3-30 (196)
138 3kb2_A SPBC2 prophage-derived 97.1 0.00029 9.9E-09 61.8 4.2 26 161-186 3-28 (173)
139 2a5y_B CED-4; apoptosis; HET: 97.1 0.0051 1.8E-07 65.3 14.6 25 157-181 150-174 (549)
140 2iyv_A Shikimate kinase, SK; t 97.1 0.00026 9E-09 63.5 3.8 27 160-186 3-29 (184)
141 2p5t_B PEZT; postsegregational 97.1 0.00049 1.7E-08 65.8 5.8 41 145-185 17-58 (253)
142 2c95_A Adenylate kinase 1; tra 97.1 0.00029 9.9E-09 63.4 3.9 30 157-186 7-36 (196)
143 2bbw_A Adenylate kinase 4, AK4 97.1 0.00034 1.2E-08 66.3 4.5 39 147-186 16-54 (246)
144 1ly1_A Polynucleotide kinase; 97.1 0.00025 8.6E-09 62.7 3.3 28 159-186 2-30 (181)
145 1qf9_A UMP/CMP kinase, protein 97.1 0.00041 1.4E-08 61.9 4.7 30 157-186 4-33 (194)
146 3cm0_A Adenylate kinase; ATP-b 97.1 0.00031 1.1E-08 62.9 3.8 29 158-186 3-31 (186)
147 1aky_A Adenylate kinase; ATP:A 97.0 0.00039 1.3E-08 64.5 4.4 29 158-186 3-31 (220)
148 2vli_A Antibiotic resistance p 97.0 0.00026 8.7E-09 63.2 2.9 29 158-186 4-32 (183)
149 3t61_A Gluconokinase; PSI-biol 97.0 0.0004 1.4E-08 63.5 4.2 29 158-186 17-45 (202)
150 3sfz_A APAF-1, apoptotic pepti 97.0 0.0083 2.8E-07 68.0 15.7 26 157-182 145-170 (1249)
151 1via_A Shikimate kinase; struc 97.0 0.00033 1.1E-08 62.5 3.4 26 161-186 6-31 (175)
152 1g41_A Heat shock protein HSLU 97.0 0.0013 4.5E-08 69.0 8.4 89 212-307 251-346 (444)
153 1zuh_A Shikimate kinase; alpha 97.0 0.00046 1.6E-08 61.1 4.2 27 160-186 8-34 (168)
154 2bwj_A Adenylate kinase 5; pho 97.0 0.00043 1.5E-08 62.3 4.0 29 158-186 11-39 (199)
155 1zd8_A GTP:AMP phosphotransfer 97.0 0.00038 1.3E-08 65.0 3.7 30 157-186 5-34 (227)
156 1kht_A Adenylate kinase; phosp 97.0 0.00036 1.2E-08 62.3 3.3 26 159-184 3-28 (192)
157 3lw7_A Adenylate kinase relate 97.0 0.00041 1.4E-08 60.3 3.3 26 160-186 2-27 (179)
158 1ukz_A Uridylate kinase; trans 96.9 0.00054 1.8E-08 62.4 4.1 30 157-186 13-42 (203)
159 3tlx_A Adenylate kinase 2; str 96.9 0.00057 2E-08 65.1 4.4 30 157-186 27-56 (243)
160 1y63_A LMAJ004144AAA protein; 96.9 0.00045 1.5E-08 62.6 3.5 28 159-186 10-38 (184)
161 4eun_A Thermoresistant glucoki 96.9 0.0006 2E-08 62.5 4.4 30 157-186 27-56 (200)
162 2plr_A DTMP kinase, probable t 96.9 0.00062 2.1E-08 61.7 4.3 28 159-186 4-31 (213)
163 1zak_A Adenylate kinase; ATP:A 96.9 0.00054 1.8E-08 63.6 4.0 29 158-186 4-32 (222)
164 1e6c_A Shikimate kinase; phosp 96.9 0.00047 1.6E-08 60.8 3.2 27 160-186 3-29 (173)
165 3cmw_A Protein RECA, recombina 96.9 0.0011 3.9E-08 79.4 7.4 91 155-249 1427-1552(1706)
166 1zp6_A Hypothetical protein AT 96.9 0.0005 1.7E-08 61.8 3.4 29 155-183 5-33 (191)
167 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0021 7.3E-08 61.7 8.0 29 158-186 3-34 (260)
168 3fb4_A Adenylate kinase; psych 96.9 0.00061 2.1E-08 62.6 4.0 26 161-186 2-27 (216)
169 1g5t_A COB(I)alamin adenosyltr 96.9 0.0047 1.6E-07 58.1 10.0 107 161-295 30-176 (196)
170 3sr0_A Adenylate kinase; phosp 96.9 0.00057 2E-08 64.2 3.7 26 161-186 2-27 (206)
171 1cke_A CK, MSSA, protein (cyti 96.8 0.00067 2.3E-08 62.6 4.1 28 159-186 5-32 (227)
172 3dl0_A Adenylate kinase; phosp 96.8 0.00058 2E-08 62.9 3.6 26 161-186 2-27 (216)
173 1knq_A Gluconate kinase; ALFA/ 96.8 0.0008 2.7E-08 59.8 4.4 28 159-186 8-35 (175)
174 1ak2_A Adenylate kinase isoenz 96.8 0.00078 2.7E-08 63.3 4.5 29 158-186 15-43 (233)
175 2r6a_A DNAB helicase, replicat 96.8 0.0019 6.6E-08 67.2 7.8 30 154-183 198-227 (454)
176 1vma_A Cell division protein F 96.8 0.003 1E-07 62.9 8.9 28 156-183 101-128 (306)
177 1nks_A Adenylate kinase; therm 96.8 0.00054 1.8E-08 61.1 3.1 24 161-184 3-26 (194)
178 3be4_A Adenylate kinase; malar 96.8 0.00063 2.1E-08 63.3 3.3 27 160-186 6-32 (217)
179 2wwf_A Thymidilate kinase, put 96.8 0.00069 2.4E-08 61.7 3.5 30 157-186 8-37 (212)
180 2pt5_A Shikimate kinase, SK; a 96.8 0.00091 3.1E-08 58.8 4.2 26 161-186 2-27 (168)
181 2z0h_A DTMP kinase, thymidylat 96.8 0.0013 4.6E-08 59.0 5.3 26 161-186 2-30 (197)
182 1nn5_A Similar to deoxythymidy 96.8 0.00075 2.6E-08 61.5 3.6 29 157-185 7-35 (215)
183 2ze6_A Isopentenyl transferase 96.7 0.001 3.4E-08 64.0 4.2 26 161-186 3-28 (253)
184 2q6t_A DNAB replication FORK h 96.7 0.0021 7.3E-08 66.7 6.7 30 154-183 195-224 (444)
185 3uie_A Adenylyl-sulfate kinase 96.6 0.0013 4.4E-08 60.3 4.2 28 157-184 23-50 (200)
186 1e4v_A Adenylate kinase; trans 96.6 0.0012 4E-08 61.1 3.9 26 161-186 2-27 (214)
187 2jaq_A Deoxyguanosine kinase; 96.6 0.0013 4.3E-08 59.3 4.1 26 161-186 2-27 (205)
188 2pbr_A DTMP kinase, thymidylat 96.6 0.0014 4.7E-08 58.6 4.2 26 161-186 2-30 (195)
189 3zvl_A Bifunctional polynucleo 96.6 0.0012 4E-08 68.3 3.9 30 157-186 256-285 (416)
190 3vlf_B 26S protease regulatory 96.6 0.0047 1.6E-07 50.3 6.8 38 298-335 2-43 (88)
191 3r20_A Cytidylate kinase; stru 96.5 0.0016 5.4E-08 62.6 4.2 29 158-186 8-36 (233)
192 2pez_A Bifunctional 3'-phospho 96.5 0.0019 6.5E-08 57.7 4.5 30 157-186 3-35 (179)
193 3ake_A Cytidylate kinase; CMP 96.5 0.0019 6.5E-08 58.5 4.5 26 161-186 4-29 (208)
194 1uj2_A Uridine-cytidine kinase 96.5 0.0014 4.7E-08 62.5 3.7 30 157-186 20-49 (252)
195 2j41_A Guanylate kinase; GMP, 96.5 0.0016 5.5E-08 58.9 3.9 28 156-183 3-30 (207)
196 1jjv_A Dephospho-COA kinase; P 96.5 0.0014 4.7E-08 59.9 3.5 26 160-186 3-28 (206)
197 3bh0_A DNAB-like replicative h 96.5 0.0072 2.5E-07 59.9 9.0 30 154-183 63-92 (315)
198 2v54_A DTMP kinase, thymidylat 96.5 0.0014 4.8E-08 59.3 3.5 29 158-186 3-32 (204)
199 3jvv_A Twitching mobility prot 96.5 0.00097 3.3E-08 67.9 2.6 23 161-183 125-147 (356)
200 2xb4_A Adenylate kinase; ATP-b 96.5 0.0017 5.7E-08 60.8 3.8 26 161-186 2-27 (223)
201 2yvu_A Probable adenylyl-sulfa 96.4 0.0022 7.6E-08 57.7 4.3 28 157-184 11-38 (186)
202 2qor_A Guanylate kinase; phosp 96.4 0.0018 6.1E-08 59.5 3.7 29 156-184 9-37 (204)
203 2b8t_A Thymidine kinase; deoxy 96.4 0.00093 3.2E-08 63.8 1.8 24 160-183 13-36 (223)
204 1uf9_A TT1252 protein; P-loop, 96.4 0.002 6.8E-08 58.1 3.9 28 158-186 7-34 (203)
205 2if2_A Dephospho-COA kinase; a 96.4 0.0016 5.6E-08 59.2 3.2 25 161-186 3-27 (204)
206 3c8u_A Fructokinase; YP_612366 96.4 0.0034 1.2E-07 57.8 5.4 29 156-184 19-47 (208)
207 1vht_A Dephospho-COA kinase; s 96.3 0.0022 7.6E-08 59.2 3.8 28 158-186 3-30 (218)
208 2qt1_A Nicotinamide riboside k 96.3 0.0018 6.2E-08 59.3 2.9 30 154-183 16-45 (207)
209 3dm5_A SRP54, signal recogniti 96.3 0.0063 2.2E-07 63.8 7.3 26 158-183 99-124 (443)
210 3tr0_A Guanylate kinase, GMP k 96.3 0.0029 9.8E-08 57.3 4.1 27 157-183 5-31 (205)
211 1m7g_A Adenylylsulfate kinase; 96.2 0.0025 8.5E-08 58.8 3.7 29 156-184 22-50 (211)
212 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0047 1.6E-07 63.2 5.9 26 160-185 25-50 (359)
213 2eyu_A Twitching motility prot 96.2 0.0015 5.3E-08 63.3 2.2 28 156-183 22-49 (261)
214 4e22_A Cytidylate kinase; P-lo 96.2 0.0031 1.1E-07 60.3 4.2 28 159-186 27-54 (252)
215 1rz3_A Hypothetical protein rb 96.2 0.0065 2.2E-07 55.7 6.2 28 156-183 19-46 (201)
216 1tf7_A KAIC; homohexamer, hexa 96.2 0.012 4.1E-07 62.3 9.0 25 155-179 35-59 (525)
217 1q3t_A Cytidylate kinase; nucl 96.2 0.0033 1.1E-07 59.1 4.1 31 156-186 13-43 (236)
218 1q57_A DNA primase/helicase; d 96.2 0.013 4.4E-07 61.5 9.1 30 155-184 238-267 (503)
219 3tqc_A Pantothenate kinase; bi 96.2 0.0067 2.3E-07 60.9 6.5 40 146-185 79-118 (321)
220 3asz_A Uridine kinase; cytidin 96.1 0.0031 1.1E-07 57.6 3.8 28 157-184 4-31 (211)
221 3tau_A Guanylate kinase, GMP k 96.1 0.0028 9.7E-08 58.6 3.5 28 157-184 6-33 (208)
222 1kgd_A CASK, peripheral plasma 96.1 0.0033 1.1E-07 56.7 3.9 27 158-184 4-30 (180)
223 2bdt_A BH3686; alpha-beta prot 96.1 0.0032 1.1E-07 56.7 3.6 24 160-183 3-26 (189)
224 2h92_A Cytidylate kinase; ross 96.1 0.0029 9.9E-08 58.2 3.2 28 159-186 3-30 (219)
225 2iut_A DNA translocase FTSK; n 96.1 0.056 1.9E-06 58.4 13.7 71 213-306 345-419 (574)
226 3crm_A TRNA delta(2)-isopenten 96.0 0.0037 1.3E-07 63.0 4.0 29 158-186 4-32 (323)
227 1ltq_A Polynucleotide kinase; 96.0 0.004 1.4E-07 60.2 3.9 28 159-186 2-30 (301)
228 2jeo_A Uridine-cytidine kinase 96.0 0.0047 1.6E-07 58.5 4.3 31 156-186 22-52 (245)
229 3kl4_A SRP54, signal recogniti 96.0 0.006 2.1E-07 63.8 5.4 26 158-183 96-121 (433)
230 1sky_E F1-ATPase, F1-ATP synth 96.0 0.0054 1.8E-07 64.9 5.0 63 161-223 153-257 (473)
231 3a00_A Guanylate kinase, GMP k 96.0 0.0035 1.2E-07 56.7 3.2 26 159-184 1-26 (186)
232 2dr3_A UPF0273 protein PH0284; 96.0 0.0036 1.2E-07 58.0 3.3 30 154-183 18-47 (247)
233 2fz4_A DNA repair protein RAD2 96.0 0.007 2.4E-07 57.4 5.3 26 161-186 110-135 (237)
234 2f6r_A COA synthase, bifunctio 95.9 0.0042 1.4E-07 60.6 3.8 28 158-186 74-101 (281)
235 3tui_C Methionine import ATP-b 95.9 0.021 7.1E-07 58.5 8.9 26 157-182 52-77 (366)
236 3rlf_A Maltose/maltodextrin im 95.9 0.0048 1.6E-07 63.5 4.1 27 157-183 27-53 (381)
237 3nwj_A ATSK2; P loop, shikimat 95.9 0.0041 1.4E-07 60.1 3.4 28 159-186 48-75 (250)
238 2ewv_A Twitching motility prot 95.9 0.0025 8.6E-08 65.0 1.9 28 156-183 133-160 (372)
239 1sq5_A Pantothenate kinase; P- 95.9 0.0085 2.9E-07 59.1 5.7 38 147-184 68-105 (308)
240 2grj_A Dephospho-COA kinase; T 95.8 0.0047 1.6E-07 57.3 3.5 27 160-186 13-39 (192)
241 4eaq_A DTMP kinase, thymidylat 95.8 0.0066 2.2E-07 57.5 4.5 29 156-184 23-51 (229)
242 4g1u_C Hemin import ATP-bindin 95.8 0.0062 2.1E-07 59.3 4.4 27 157-183 35-61 (266)
243 3fvq_A Fe(3+) IONS import ATP- 95.8 0.006 2E-07 62.3 4.4 26 157-182 28-53 (359)
244 1odf_A YGR205W, hypothetical 3 95.8 0.012 4.2E-07 57.9 6.5 30 155-184 27-56 (290)
245 4a1f_A DNAB helicase, replicat 95.8 0.005 1.7E-07 62.3 3.8 30 154-183 41-70 (338)
246 3gmt_A Adenylate kinase; ssgci 95.7 0.0061 2.1E-07 58.6 3.9 26 161-186 10-35 (230)
247 1gtv_A TMK, thymidylate kinase 95.7 0.0038 1.3E-07 56.8 2.4 24 161-184 2-25 (214)
248 1nlf_A Regulatory protein REPA 95.7 0.0055 1.9E-07 59.0 3.3 29 155-183 26-54 (279)
249 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.0034 1.2E-07 63.0 1.8 59 160-222 172-251 (330)
250 2c9o_A RUVB-like 1; hexameric 95.6 0.032 1.1E-06 57.9 9.1 71 212-311 296-380 (456)
251 1lvg_A Guanylate kinase, GMP k 95.6 0.0061 2.1E-07 56.0 3.3 27 158-184 3-29 (198)
252 3bgw_A DNAB-like replicative h 95.6 0.021 7.3E-07 59.5 7.8 30 154-183 192-221 (444)
253 1znw_A Guanylate kinase, GMP k 95.6 0.0072 2.5E-07 55.6 3.8 29 155-183 16-44 (207)
254 4f4c_A Multidrug resistance pr 95.6 0.029 9.8E-07 66.1 9.6 28 156-183 441-468 (1321)
255 1cr0_A DNA primase/helicase; R 95.6 0.0077 2.6E-07 58.3 4.1 30 154-183 30-59 (296)
256 3thx_B DNA mismatch repair pro 95.6 0.055 1.9E-06 61.6 11.4 26 156-181 670-695 (918)
257 1ls1_A Signal recognition part 95.5 0.017 5.8E-07 56.9 6.3 26 158-183 97-122 (295)
258 3aji_B S6C, proteasome (prosom 95.4 0.0045 1.5E-07 49.4 1.5 37 298-334 2-42 (83)
259 1z6g_A Guanylate kinase; struc 95.3 0.0086 2.9E-07 56.0 3.3 28 156-183 20-47 (218)
260 1g8f_A Sulfate adenylyltransfe 95.3 0.012 4.2E-07 62.7 4.8 53 132-185 369-421 (511)
261 3fdi_A Uncharacterized protein 95.3 0.012 4E-07 54.7 4.1 27 160-186 7-33 (201)
262 3aez_A Pantothenate kinase; tr 95.2 0.013 4.4E-07 58.3 4.4 30 156-185 87-116 (312)
263 1htw_A HI0065; nucleotide-bind 95.2 0.014 4.7E-07 52.4 4.1 29 156-184 30-58 (158)
264 3thx_A DNA mismatch repair pro 95.1 0.082 2.8E-06 60.2 11.1 22 160-181 663-684 (934)
265 3lnc_A Guanylate kinase, GMP k 95.1 0.0064 2.2E-07 56.7 1.7 28 156-183 24-52 (231)
266 2ius_A DNA translocase FTSK; n 95.1 0.084 2.9E-06 56.3 10.4 74 211-307 296-374 (512)
267 2v9p_A Replication protein E1; 95.0 0.016 5.5E-07 57.8 4.5 29 155-183 122-150 (305)
268 3a8t_A Adenylate isopentenyltr 95.0 0.01 3.5E-07 60.2 3.0 29 157-185 38-66 (339)
269 3ice_A Transcription terminati 95.0 0.024 8.2E-07 58.9 5.7 25 159-183 174-198 (422)
270 3foz_A TRNA delta(2)-isopenten 95.0 0.015 5E-07 58.6 4.0 29 157-185 8-36 (316)
271 2ocp_A DGK, deoxyguanosine kin 94.9 0.015 5E-07 54.7 3.6 26 159-184 2-27 (241)
272 3ney_A 55 kDa erythrocyte memb 94.9 0.017 5.8E-07 54.1 3.9 27 158-184 18-44 (197)
273 4b3f_X DNA-binding protein smu 94.9 0.013 4.5E-07 63.5 3.5 22 161-182 207-228 (646)
274 3b9q_A Chloroplast SRP recepto 94.9 0.036 1.2E-06 54.8 6.4 29 156-184 97-125 (302)
275 3d3q_A TRNA delta(2)-isopenten 94.8 0.017 6E-07 58.5 4.0 27 159-185 7-33 (340)
276 3upu_A ATP-dependent DNA helic 94.8 0.014 5E-07 60.5 3.5 24 161-184 47-70 (459)
277 2i3b_A HCR-ntpase, human cance 94.7 0.018 6E-07 53.2 3.6 23 161-183 3-25 (189)
278 1s96_A Guanylate kinase, GMP k 94.7 0.019 6.6E-07 54.1 3.8 29 156-184 13-41 (219)
279 4a82_A Cystic fibrosis transme 94.7 0.024 8.2E-07 60.8 4.9 28 156-183 364-391 (578)
280 3hdt_A Putative kinase; struct 94.7 0.019 6.6E-07 54.5 3.7 28 159-186 14-41 (223)
281 2axn_A 6-phosphofructo-2-kinas 94.7 0.017 5.7E-07 61.5 3.6 28 157-184 33-60 (520)
282 1np6_A Molybdopterin-guanine d 94.6 0.023 7.9E-07 51.9 4.1 27 157-183 4-30 (174)
283 3qf4_B Uncharacterized ABC tra 94.6 0.029 9.8E-07 60.5 5.4 28 156-183 378-405 (598)
284 1a7j_A Phosphoribulokinase; tr 94.6 0.0092 3.1E-07 58.7 1.3 27 158-184 4-30 (290)
285 4f4c_A Multidrug resistance pr 94.5 0.042 1.4E-06 64.7 6.9 28 156-183 1102-1129(1321)
286 3v9p_A DTMP kinase, thymidylat 94.5 0.038 1.3E-06 52.7 5.3 26 158-183 24-49 (227)
287 2qmh_A HPR kinase/phosphorylas 94.5 0.014 4.9E-07 55.2 2.3 26 159-184 34-59 (205)
288 2j37_W Signal recognition part 94.5 0.076 2.6E-06 56.5 8.1 27 157-183 99-125 (504)
289 1wb9_A DNA mismatch repair pro 94.4 0.12 4.2E-06 57.8 10.0 25 158-182 606-630 (800)
290 1ex7_A Guanylate kinase; subst 94.4 0.022 7.7E-07 52.7 3.4 22 162-183 4-25 (186)
291 3exa_A TRNA delta(2)-isopenten 94.4 0.022 7.6E-07 57.4 3.5 27 159-185 3-29 (322)
292 2og2_A Putative signal recogni 94.3 0.056 1.9E-06 55.0 6.5 29 156-184 154-182 (359)
293 1rj9_A FTSY, signal recognitio 94.3 0.032 1.1E-06 55.4 4.6 28 158-185 101-128 (304)
294 3eph_A TRNA isopentenyltransfe 94.3 0.026 9E-07 58.6 4.1 28 158-185 1-28 (409)
295 3e1s_A Exodeoxyribonuclease V, 94.3 0.024 8.3E-07 61.0 3.9 26 159-184 204-229 (574)
296 1j8m_F SRP54, signal recogniti 94.3 0.045 1.5E-06 54.0 5.5 25 159-183 98-122 (297)
297 3e70_C DPA, signal recognition 94.2 0.03 1E-06 56.2 4.1 28 157-184 127-154 (328)
298 1xjc_A MOBB protein homolog; s 94.2 0.032 1.1E-06 51.0 3.9 25 159-183 4-28 (169)
299 2orw_A Thymidine kinase; TMTK, 94.2 0.033 1.1E-06 50.9 4.0 24 160-183 4-27 (184)
300 3p32_A Probable GTPase RV1496/ 94.2 0.093 3.2E-06 52.6 7.6 27 157-183 77-103 (355)
301 1p5z_B DCK, deoxycytidine kina 94.1 0.012 4.2E-07 56.1 1.0 27 157-183 22-48 (263)
302 3kta_A Chromosome segregation 94.1 0.033 1.1E-06 49.5 3.7 25 161-185 28-52 (182)
303 2ffh_A Protein (FFH); SRP54, s 94.1 0.086 2.9E-06 54.9 7.3 27 158-184 97-123 (425)
304 2px0_A Flagellar biosynthesis 94.0 0.034 1.2E-06 54.8 4.1 28 157-184 103-130 (296)
305 4edh_A DTMP kinase, thymidylat 94.0 0.036 1.2E-06 52.0 4.1 26 159-184 6-31 (213)
306 4i1u_A Dephospho-COA kinase; s 94.0 0.056 1.9E-06 51.1 5.4 26 160-186 10-35 (210)
307 2yhs_A FTSY, cell division pro 94.0 0.078 2.7E-06 56.5 7.0 29 156-184 290-318 (503)
308 3tmk_A Thymidylate kinase; pho 94.0 0.041 1.4E-06 52.0 4.4 29 158-186 4-32 (216)
309 2dzn_B 26S protease regulatory 94.0 0.0093 3.2E-07 47.7 -0.1 35 300-334 1-39 (82)
310 1bif_A 6-phosphofructo-2-kinas 93.9 0.028 9.7E-07 58.5 3.5 28 157-184 37-64 (469)
311 1vt4_I APAF-1 related killer D 93.9 0.054 1.8E-06 62.7 5.9 24 159-182 150-173 (1221)
312 2xxa_A Signal recognition part 93.9 0.12 4.1E-06 53.8 8.2 27 157-183 98-124 (433)
313 2gks_A Bifunctional SAT/APS ki 93.9 0.04 1.4E-06 59.1 4.6 50 135-185 349-398 (546)
314 2oap_1 GSPE-2, type II secreti 93.9 0.015 5.2E-07 61.8 1.3 27 158-184 259-285 (511)
315 1x6v_B Bifunctional 3'-phospho 93.8 0.041 1.4E-06 60.1 4.5 29 158-186 51-82 (630)
316 2gk6_A Regulator of nonsense t 93.8 0.032 1.1E-06 60.4 3.5 24 161-184 197-220 (624)
317 3lv8_A DTMP kinase, thymidylat 93.7 0.043 1.5E-06 52.5 4.0 27 158-184 26-52 (236)
318 1zu4_A FTSY; GTPase, signal re 93.7 0.046 1.6E-06 54.6 4.3 28 156-183 102-129 (320)
319 2onk_A Molybdate/tungstate ABC 93.6 0.036 1.2E-06 53.0 3.2 27 156-183 22-48 (240)
320 2cbz_A Multidrug resistance-as 93.5 0.034 1.2E-06 52.9 2.8 28 156-183 28-55 (237)
321 1m8p_A Sulfate adenylyltransfe 93.4 0.063 2.2E-06 57.8 5.1 28 157-184 394-421 (573)
322 2pcj_A ABC transporter, lipopr 93.4 0.03 1E-06 52.8 2.2 28 157-184 28-55 (224)
323 2f1r_A Molybdopterin-guanine d 93.4 0.037 1.3E-06 50.3 2.8 25 160-184 3-27 (171)
324 2r8r_A Sensor protein; KDPD, P 93.3 0.059 2E-06 51.7 4.2 25 159-183 6-30 (228)
325 2f9l_A RAB11B, member RAS onco 93.3 0.046 1.6E-06 49.2 3.2 23 160-182 6-28 (199)
326 3tif_A Uncharacterized ABC tra 93.2 0.04 1.4E-06 52.4 2.8 28 157-184 29-56 (235)
327 3cr8_A Sulfate adenylyltranfer 93.2 0.039 1.3E-06 59.3 3.0 29 156-184 366-394 (552)
328 1oix_A RAS-related protein RAB 93.2 0.047 1.6E-06 49.1 3.1 24 160-183 30-53 (191)
329 3ld9_A DTMP kinase, thymidylat 93.2 0.064 2.2E-06 51.0 4.2 29 157-185 19-47 (223)
330 1b0u_A Histidine permease; ABC 93.2 0.04 1.4E-06 53.3 2.8 28 157-184 30-57 (262)
331 1lw7_A Transcriptional regulat 93.1 0.047 1.6E-06 54.8 3.3 28 159-186 170-197 (365)
332 3b85_A Phosphate starvation-in 93.1 0.037 1.3E-06 51.8 2.4 25 158-182 21-45 (208)
333 1ewq_A DNA mismatch repair pro 93.1 0.082 2.8E-06 59.0 5.5 23 160-182 577-599 (765)
334 3tqf_A HPR(Ser) kinase; transf 93.0 0.055 1.9E-06 50.2 3.4 22 160-181 17-38 (181)
335 2dyk_A GTP-binding protein; GT 93.0 0.056 1.9E-06 45.9 3.2 22 161-182 3-24 (161)
336 1tf7_A KAIC; homohexamer, hexa 93.0 0.046 1.6E-06 57.8 3.2 29 155-183 277-305 (525)
337 1mv5_A LMRA, multidrug resista 93.0 0.045 1.5E-06 52.2 2.8 28 156-183 25-52 (243)
338 2zu0_C Probable ATP-dependent 93.0 0.053 1.8E-06 52.5 3.3 28 156-183 43-70 (267)
339 1w36_D RECD, exodeoxyribonucle 92.9 0.055 1.9E-06 58.5 3.7 24 160-183 165-188 (608)
340 1z2a_A RAS-related protein RAB 92.9 0.061 2.1E-06 45.9 3.3 24 159-182 5-28 (168)
341 4tmk_A Protein (thymidylate ki 92.8 0.074 2.5E-06 50.0 4.0 25 159-183 3-27 (213)
342 2ghi_A Transport protein; mult 92.8 0.049 1.7E-06 52.6 2.8 29 156-184 43-71 (260)
343 2ixe_A Antigen peptide transpo 92.8 0.049 1.7E-06 52.9 2.8 29 156-184 42-70 (271)
344 1nrj_B SR-beta, signal recogni 92.8 0.076 2.6E-06 48.1 3.9 25 159-183 12-36 (218)
345 2d2e_A SUFC protein; ABC-ATPas 92.8 0.05 1.7E-06 52.1 2.8 26 157-182 27-52 (250)
346 2ce2_X GTPase HRAS; signaling 92.8 0.063 2.1E-06 45.4 3.1 22 161-182 5-26 (166)
347 2olj_A Amino acid ABC transpor 92.7 0.05 1.7E-06 52.8 2.8 29 156-184 47-75 (263)
348 3l0o_A Transcription terminati 92.7 0.14 4.7E-06 53.3 6.1 23 161-183 177-199 (427)
349 1g6h_A High-affinity branched- 92.7 0.043 1.5E-06 52.8 2.3 28 157-184 31-58 (257)
350 3g5u_A MCG1178, multidrug resi 92.7 0.12 4E-06 60.8 6.3 28 156-183 413-440 (1284)
351 3qf4_A ABC transporter, ATP-bi 92.7 0.065 2.2E-06 57.6 3.9 28 156-183 366-393 (587)
352 1kao_A RAP2A; GTP-binding prot 92.7 0.066 2.3E-06 45.4 3.2 23 160-182 4-26 (167)
353 3ch4_B Pmkase, phosphomevalona 92.6 0.088 3E-06 49.6 4.2 30 156-185 8-37 (202)
354 2yyz_A Sugar ABC transporter, 92.6 0.061 2.1E-06 54.7 3.3 27 157-183 27-53 (359)
355 2ged_A SR-beta, signal recogni 92.6 0.085 2.9E-06 46.6 3.9 26 157-182 46-71 (193)
356 2ff7_A Alpha-hemolysin translo 92.6 0.046 1.6E-06 52.3 2.3 28 157-184 33-60 (247)
357 3d31_A Sulfate/molybdate ABC t 92.6 0.053 1.8E-06 54.9 2.9 27 157-183 24-50 (348)
358 2it1_A 362AA long hypothetical 92.6 0.062 2.1E-06 54.8 3.3 27 157-183 27-53 (362)
359 1ji0_A ABC transporter; ATP bi 92.6 0.047 1.6E-06 51.9 2.3 28 157-184 30-57 (240)
360 2qm8_A GTPase/ATPase; G protei 92.6 0.085 2.9E-06 52.8 4.3 28 156-183 52-79 (337)
361 2pze_A Cystic fibrosis transme 92.6 0.047 1.6E-06 51.6 2.3 28 157-184 32-59 (229)
362 2v3c_C SRP54, signal recogniti 92.5 0.05 1.7E-06 56.7 2.6 26 158-183 98-123 (432)
363 1u8z_A RAS-related protein RAL 92.5 0.072 2.5E-06 45.2 3.2 23 160-182 5-27 (168)
364 1ek0_A Protein (GTP-binding pr 92.5 0.072 2.5E-06 45.4 3.2 23 160-182 4-26 (170)
365 1upt_A ARL1, ADP-ribosylation 92.5 0.093 3.2E-06 45.0 4.0 26 157-182 5-30 (171)
366 2wjy_A Regulator of nonsense t 92.5 0.063 2.1E-06 60.1 3.5 24 161-184 373-396 (800)
367 1v43_A Sugar-binding transport 92.5 0.065 2.2E-06 54.8 3.3 27 157-183 35-61 (372)
368 2yz2_A Putative ABC transporte 92.4 0.06 2E-06 52.1 2.8 28 157-184 31-58 (266)
369 2wsm_A Hydrogenase expression/ 92.4 0.091 3.1E-06 47.8 3.9 27 159-185 30-56 (221)
370 1vpl_A ABC transporter, ATP-bi 92.4 0.06 2E-06 52.0 2.8 29 156-184 38-66 (256)
371 3gfo_A Cobalt import ATP-bindi 92.4 0.051 1.7E-06 53.2 2.3 28 157-184 32-59 (275)
372 1z0j_A RAB-22, RAS-related pro 92.3 0.078 2.7E-06 45.3 3.2 24 160-183 7-30 (170)
373 1g16_A RAS-related protein SEC 92.3 0.076 2.6E-06 45.4 3.1 23 160-182 4-26 (170)
374 2o8b_B DNA mismatch repair pro 92.3 0.2 6.9E-06 57.6 7.5 22 159-180 789-810 (1022)
375 1wms_A RAB-9, RAB9, RAS-relate 92.3 0.078 2.7E-06 45.9 3.2 23 160-182 8-30 (177)
376 1sgw_A Putative ABC transporte 92.3 0.047 1.6E-06 51.4 1.9 27 158-184 34-60 (214)
377 3lre_A Kinesin-like protein KI 92.3 0.25 8.7E-06 50.1 7.4 75 119-203 70-144 (355)
378 1oxx_K GLCV, glucose, ABC tran 92.3 0.054 1.8E-06 54.9 2.4 27 157-183 29-55 (353)
379 2zej_A Dardarin, leucine-rich 92.2 0.061 2.1E-06 47.7 2.5 21 161-181 4-24 (184)
380 1z47_A CYSA, putative ABC-tran 92.2 0.062 2.1E-06 54.6 2.8 26 158-183 40-65 (355)
381 1z08_A RAS-related protein RAB 92.2 0.082 2.8E-06 45.3 3.2 24 159-182 6-29 (170)
382 3sop_A Neuronal-specific septi 92.2 0.079 2.7E-06 51.5 3.4 25 161-185 4-28 (270)
383 2nzj_A GTP-binding protein REM 92.2 0.077 2.6E-06 45.7 3.0 24 159-182 4-27 (175)
384 4hlc_A DTMP kinase, thymidylat 92.2 0.18 6.3E-06 46.8 5.8 25 160-184 3-27 (205)
385 2vp4_A Deoxynucleoside kinase; 92.2 0.056 1.9E-06 50.5 2.3 27 156-182 17-43 (230)
386 1r2q_A RAS-related protein RAB 92.2 0.085 2.9E-06 45.0 3.2 23 160-182 7-29 (170)
387 1g29_1 MALK, maltose transport 92.1 0.064 2.2E-06 54.8 2.8 26 158-183 28-53 (372)
388 2qi9_C Vitamin B12 import ATP- 92.1 0.057 1.9E-06 51.9 2.3 27 157-183 24-50 (249)
389 2obl_A ESCN; ATPase, hydrolase 92.1 0.087 3E-06 53.2 3.7 29 158-186 70-98 (347)
390 2wji_A Ferrous iron transport 92.1 0.08 2.7E-06 46.0 3.1 22 160-181 4-25 (165)
391 1r8s_A ADP-ribosylation factor 92.1 0.093 3.2E-06 44.7 3.4 22 161-182 2-23 (164)
392 2nq2_C Hypothetical ABC transp 92.0 0.059 2E-06 51.9 2.3 27 157-183 29-55 (253)
393 1ky3_A GTP-binding protein YPT 92.0 0.088 3E-06 45.5 3.2 24 159-182 8-31 (182)
394 3bc1_A RAS-related protein RAB 92.0 0.087 3E-06 46.0 3.2 24 159-182 11-34 (195)
395 2ihy_A ABC transporter, ATP-bi 92.0 0.06 2E-06 52.7 2.3 28 157-184 45-72 (279)
396 1c1y_A RAS-related protein RAP 92.0 0.092 3.1E-06 44.7 3.2 23 160-182 4-26 (167)
397 2erx_A GTP-binding protein DI- 92.0 0.075 2.6E-06 45.4 2.7 23 160-182 4-26 (172)
398 2y8e_A RAB-protein 6, GH09086P 92.0 0.088 3E-06 45.4 3.1 23 160-182 15-37 (179)
399 1p9r_A General secretion pathw 92.0 0.1 3.6E-06 54.0 4.2 27 160-186 168-194 (418)
400 1c9k_A COBU, adenosylcobinamid 91.9 0.062 2.1E-06 49.7 2.2 24 162-186 2-25 (180)
401 3clv_A RAB5 protein, putative; 91.9 0.11 3.9E-06 45.4 3.8 25 158-182 6-30 (208)
402 3q85_A GTP-binding protein REM 91.9 0.09 3.1E-06 45.1 3.1 21 161-181 4-24 (169)
403 3gd7_A Fusion complex of cysti 91.8 0.085 2.9E-06 54.3 3.3 26 157-182 45-70 (390)
404 2lkc_A Translation initiation 91.8 0.1 3.6E-06 45.1 3.4 25 158-182 7-31 (178)
405 1z0f_A RAB14, member RAS oncog 91.7 0.1 3.4E-06 45.0 3.2 24 160-183 16-39 (179)
406 3q72_A GTP-binding protein RAD 91.7 0.087 3E-06 45.0 2.8 21 161-181 4-24 (166)
407 2wjg_A FEOB, ferrous iron tran 91.7 0.083 2.9E-06 46.4 2.7 23 160-182 8-30 (188)
408 2hxs_A RAB-26, RAS-related pro 91.7 0.087 3E-06 45.6 2.8 24 159-182 6-29 (178)
409 2hf9_A Probable hydrogenase ni 91.7 0.13 4.4E-06 46.9 4.1 26 159-184 38-63 (226)
410 2xzl_A ATP-dependent helicase 91.6 0.09 3.1E-06 58.8 3.5 23 161-183 377-399 (802)
411 2a9k_A RAS-related protein RAL 91.6 0.1 3.5E-06 45.3 3.2 23 160-182 19-41 (187)
412 2fn4_A P23, RAS-related protei 91.5 0.1 3.5E-06 45.0 3.1 23 160-182 10-32 (181)
413 4dsu_A GTPase KRAS, isoform 2B 91.5 0.11 3.7E-06 45.4 3.2 24 160-183 5-28 (189)
414 2bbs_A Cystic fibrosis transme 91.5 0.074 2.5E-06 52.4 2.4 28 156-183 61-88 (290)
415 2bme_A RAB4A, RAS-related prot 91.4 0.11 3.7E-06 45.5 3.1 24 159-182 10-33 (186)
416 1m7b_A RND3/RHOE small GTP-bin 91.4 0.11 3.6E-06 45.9 3.1 24 159-182 7-30 (184)
417 3con_A GTPase NRAS; structural 91.4 0.11 3.8E-06 45.8 3.2 23 160-182 22-44 (190)
418 1pui_A ENGB, probable GTP-bind 91.4 0.057 2E-06 48.5 1.3 27 156-182 23-49 (210)
419 3tw8_B RAS-related protein RAB 91.4 0.1 3.4E-06 45.1 2.9 23 159-181 9-31 (181)
420 2efe_B Small GTP-binding prote 91.4 0.11 3.9E-06 45.0 3.2 23 160-182 13-35 (181)
421 2xtp_A GTPase IMAP family memb 91.4 0.29 9.9E-06 46.0 6.3 25 158-182 21-45 (260)
422 2oil_A CATX-8, RAS-related pro 91.3 0.11 3.9E-06 45.9 3.2 24 159-182 25-48 (193)
423 2atv_A RERG, RAS-like estrogen 91.3 0.14 4.6E-06 45.7 3.7 25 158-182 27-51 (196)
424 1dek_A Deoxynucleoside monopho 91.3 0.13 4.3E-06 49.6 3.7 42 160-201 2-45 (241)
425 3t1o_A Gliding protein MGLA; G 91.3 0.12 4E-06 45.4 3.2 23 160-182 15-37 (198)
426 1yrb_A ATP(GTP)binding protein 91.3 0.15 5.2E-06 47.6 4.2 28 157-184 12-39 (262)
427 2npi_A Protein CLP1; CLP1-PCF1 91.3 0.11 3.6E-06 54.6 3.4 25 158-182 137-161 (460)
428 1mh1_A RAC1; GTP-binding, GTPa 91.2 0.12 4.2E-06 44.8 3.2 23 160-182 6-28 (186)
429 2pjz_A Hypothetical protein ST 91.1 0.094 3.2E-06 50.9 2.6 25 159-183 30-54 (263)
430 3kkq_A RAS-related protein M-R 91.1 0.13 4.3E-06 45.0 3.2 23 160-182 19-41 (183)
431 2g6b_A RAS-related protein RAB 91.0 0.13 4.4E-06 44.6 3.2 25 158-182 9-33 (180)
432 3tkl_A RAS-related protein RAB 91.0 0.13 4.4E-06 45.3 3.2 24 159-182 16-39 (196)
433 1moz_A ARL1, ADP-ribosylation 90.9 0.16 5.3E-06 44.3 3.7 25 157-181 16-40 (183)
434 2gf9_A RAS-related protein RAB 90.9 0.13 4.6E-06 45.3 3.2 23 160-182 23-45 (189)
435 2xau_A PRE-mRNA-splicing facto 90.9 0.11 3.8E-06 57.8 3.3 23 160-182 110-132 (773)
436 3dz8_A RAS-related protein RAB 90.9 0.14 4.7E-06 45.5 3.3 25 159-183 23-47 (191)
437 2cxx_A Probable GTP-binding pr 90.9 0.12 4.2E-06 45.2 2.9 22 161-182 3-24 (190)
438 3pqc_A Probable GTP-binding pr 90.8 0.11 3.7E-06 45.6 2.6 23 160-182 24-46 (195)
439 3bwd_D RAC-like GTP-binding pr 90.8 0.17 5.8E-06 43.9 3.8 24 159-182 8-31 (182)
440 2iwr_A Centaurin gamma 1; ANK 90.8 0.12 4.1E-06 44.9 2.8 23 160-182 8-30 (178)
441 2x77_A ADP-ribosylation factor 90.7 0.14 4.9E-06 45.1 3.3 29 152-180 15-43 (189)
442 1x3s_A RAS-related protein RAB 90.7 0.14 4.9E-06 44.9 3.2 23 160-182 16-38 (195)
443 2gj8_A MNME, tRNA modification 90.7 0.15 5.2E-06 44.8 3.4 24 159-182 4-27 (172)
444 2gza_A Type IV secretion syste 90.6 0.085 2.9E-06 53.2 1.9 26 159-184 175-200 (361)
445 1svi_A GTP-binding protein YSX 90.6 0.15 5E-06 45.1 3.2 24 159-182 23-46 (195)
446 3nh6_A ATP-binding cassette SU 90.6 0.1 3.4E-06 52.0 2.3 29 156-184 77-105 (306)
447 3c5c_A RAS-like protein 12; GD 90.6 0.15 5E-06 45.4 3.2 23 160-182 22-44 (187)
448 2fg5_A RAB-22B, RAS-related pr 90.6 0.14 4.9E-06 45.5 3.1 25 158-182 22-46 (192)
449 3t5g_A GTP-binding protein RHE 90.6 0.15 5E-06 44.5 3.1 23 160-182 7-29 (181)
450 2p67_A LAO/AO transport system 90.5 0.18 6.2E-06 50.2 4.2 28 156-183 53-80 (341)
451 3k53_A Ferrous iron transport 90.5 0.14 4.7E-06 48.9 3.1 23 160-182 4-26 (271)
452 2bov_A RAla, RAS-related prote 90.4 0.15 5.3E-06 45.2 3.2 23 160-182 15-37 (206)
453 1z06_A RAS-related protein RAB 90.4 0.15 5.3E-06 44.9 3.2 23 160-182 21-43 (189)
454 1vg8_A RAS-related protein RAB 90.4 0.15 5.3E-06 45.3 3.2 25 158-182 7-31 (207)
455 1f2t_A RAD50 ABC-ATPase; DNA d 90.4 0.2 6.8E-06 44.0 3.8 24 160-183 24-47 (149)
456 1m2o_B GTP-binding protein SAR 90.4 0.17 5.7E-06 45.3 3.4 23 160-182 24-46 (190)
457 2nr8_A Kinesin-like protein KI 90.4 0.27 9.2E-06 50.1 5.3 74 119-203 69-145 (358)
458 2a5j_A RAS-related protein RAB 90.3 0.16 5.5E-06 45.0 3.2 23 160-182 22-44 (191)
459 1zd9_A ADP-ribosylation factor 90.3 0.16 5.5E-06 45.0 3.2 25 158-182 21-45 (188)
460 3reg_A RHO-like small GTPase; 90.3 0.16 5.5E-06 45.0 3.2 25 158-182 22-46 (194)
461 3cph_A RAS-related protein SEC 90.3 0.16 5.5E-06 45.4 3.2 26 157-182 18-43 (213)
462 3ihw_A Centg3; RAS, centaurin, 90.3 0.16 5.6E-06 45.1 3.2 23 160-182 21-43 (184)
463 1zbd_A Rabphilin-3A; G protein 90.1 0.14 4.8E-06 45.6 2.7 23 160-182 9-31 (203)
464 2p5s_A RAS and EF-hand domain 90.1 0.2 6.7E-06 44.8 3.6 26 157-182 26-51 (199)
465 3oes_A GTPase rhebl1; small GT 90.1 0.17 5.6E-06 45.4 3.1 24 159-182 24-47 (201)
466 1ksh_A ARF-like protein 2; sma 90.0 0.19 6.4E-06 44.1 3.4 26 157-182 16-41 (186)
467 2dpy_A FLII, flagellum-specifi 90.0 0.19 6.3E-06 52.4 3.8 31 156-186 154-184 (438)
468 2bcg_Y Protein YP2, GTP-bindin 89.9 0.17 5.9E-06 45.3 3.1 23 160-182 9-31 (206)
469 1gwn_A RHO-related GTP-binding 89.7 0.18 6.2E-06 45.9 3.1 24 159-182 28-51 (205)
470 2r9v_A ATP synthase subunit al 89.7 0.32 1.1E-05 51.8 5.4 26 161-186 177-203 (515)
471 2www_A Methylmalonic aciduria 89.7 0.23 7.9E-06 49.8 4.1 25 159-183 74-98 (349)
472 2gf0_A GTP-binding protein DI- 89.6 0.24 8.3E-06 43.6 3.8 25 158-182 7-31 (199)
473 2atx_A Small GTP binding prote 89.6 0.19 6.5E-06 44.4 3.1 23 160-182 19-41 (194)
474 1zj6_A ADP-ribosylation factor 89.5 0.23 7.9E-06 43.7 3.6 25 157-181 14-38 (187)
475 2fu5_C RAS-related protein RAB 89.4 0.11 3.9E-06 45.2 1.5 24 159-182 8-31 (183)
476 3euj_A Chromosome partition pr 89.4 0.24 8.1E-06 52.4 4.1 30 156-186 27-56 (483)
477 2ew1_A RAS-related protein RAB 89.4 0.2 6.8E-06 45.6 3.1 24 159-182 26-49 (201)
478 2fh5_B SR-beta, signal recogni 89.4 0.23 7.8E-06 44.8 3.5 24 159-182 7-30 (214)
479 1fzq_A ADP-ribosylation factor 89.2 0.24 8E-06 43.8 3.4 25 158-182 15-39 (181)
480 2fv8_A H6, RHO-related GTP-bin 89.1 0.22 7.4E-06 44.9 3.1 23 160-182 26-48 (207)
481 2gco_A H9, RHO-related GTP-bin 89.0 0.22 7.5E-06 44.7 3.1 23 160-182 26-48 (201)
482 2h17_A ADP-ribosylation factor 89.0 0.17 5.8E-06 44.5 2.3 24 159-182 21-44 (181)
483 2q3h_A RAS homolog gene family 89.0 0.22 7.4E-06 44.3 3.1 25 158-182 19-43 (201)
484 3qks_A DNA double-strand break 89.0 0.28 9.5E-06 45.2 3.8 28 159-186 23-50 (203)
485 1t5c_A CENP-E protein, centrom 89.0 0.49 1.7E-05 48.0 5.9 74 120-203 43-116 (349)
486 3lxx_A GTPase IMAP family memb 88.9 0.19 6.5E-06 46.7 2.7 24 159-182 29-52 (239)
487 1f6b_A SAR1; gtpases, N-termin 88.9 0.23 7.9E-06 44.7 3.1 22 160-181 26-47 (198)
488 3hjn_A DTMP kinase, thymidylat 88.9 0.26 8.8E-06 45.4 3.5 22 162-183 3-24 (197)
489 3vkw_A Replicase large subunit 88.9 0.31 1.1E-05 51.1 4.5 26 156-181 158-183 (446)
490 2qag_B Septin-6, protein NEDD5 88.9 0.18 6.2E-06 52.6 2.7 26 157-182 38-65 (427)
491 2j0v_A RAC-like GTP-binding pr 88.8 0.24 8.1E-06 44.6 3.1 23 160-182 10-32 (212)
492 2o52_A RAS-related protein RAB 88.8 0.22 7.6E-06 44.7 3.0 26 157-182 23-48 (200)
493 2hup_A RAS-related protein RAB 88.7 0.24 8.1E-06 44.6 3.1 24 159-182 29-52 (201)
494 2f7s_A C25KG, RAS-related prot 88.7 0.23 7.9E-06 44.8 3.0 23 160-182 26-48 (217)
495 1qhl_A Protein (cell division 88.6 0.11 3.8E-06 49.4 0.8 24 163-186 31-54 (227)
496 4gzl_A RAS-related C3 botulinu 88.6 0.28 9.7E-06 44.2 3.5 26 157-182 28-53 (204)
497 4bas_A ADP-ribosylation factor 88.5 0.23 8E-06 43.7 2.9 24 158-181 16-39 (199)
498 2cjw_A GTP-binding protein GEM 88.5 0.28 9.4E-06 44.0 3.4 23 160-182 7-29 (192)
499 2b6h_A ADP-ribosylation factor 88.5 0.28 9.6E-06 43.8 3.4 24 158-181 28-51 (192)
500 2yv5_A YJEQ protein; hydrolase 88.4 0.26 8.7E-06 48.4 3.3 22 159-180 165-186 (302)
No 1
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=100.00 E-value=5.5e-53 Score=419.07 Aligned_cols=282 Identities=89% Similarity=1.440 Sum_probs=242.8
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCCh
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEP 192 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~ 192 (464)
+|+++.+++|++++|+|+++.+++|+|+..++.++|+|+|||||||||||+||++||++++.+ .++|++
T Consensus 1 ~~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~ 80 (293)
T 3t15_A 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEP 80 (293)
T ss_dssp CCCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HH
T ss_pred CcccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchh
Confidence 478999999999999999999999999999999999999999999999999999999999988 788999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEE
Q 012418 193 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 272 (464)
Q Consensus 193 ~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIa 272 (464)
++.++++|..|.+.++..+||||||||||++.+++.+..+.+..++.+...|++++|+.+.+++++.+......+|+||+
T Consensus 81 ~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ 160 (293)
T 3t15_A 81 AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 160 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEE
Confidence 99999999999888889999999999999999877656666778889999999999999999999887666778999999
Q ss_pred EeCCCCCCchhhccCCcceEEEeCCCHHHHHHHHHhhcCCCCCChhHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHH
Q 012418 273 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 352 (464)
Q Consensus 273 TTN~~~~LDpALlRpGRfD~~i~iP~~eeR~eIl~~~~~~~~v~~~~la~lt~gfsgadLd~~~alra~~~~~~i~~~i~ 352 (464)
|||+++.||+||+|+||||+.+++|+.++|.+|++.++...+++.+.+++++++|++++|++++++|++++++++++|+.
T Consensus 161 ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~ 240 (293)
T 3t15_A 161 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240 (293)
T ss_dssp ECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhhhhhhhcCCCCCCCcCCCccCHHHHHHHhHhhHHHHhhhhhhhHHHH
Q 012418 353 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 405 (464)
Q Consensus 353 ~~~~e~l~~~l~~~~~~~~~~~~~~~t~~~Lleag~~lv~Eqe~v~~~~l~~~ 405 (464)
+.|.+++.+.+++++.+.|.|+++.+++++|+++|++++.||+++++++|+++
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~~ 293 (293)
T 3t15_A 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293 (293)
T ss_dssp HTCSTTCHHHHTSCSSCSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCHHHHHHHHHcCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999888999999999999999999999999999999999863
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-39 Score=337.99 Aligned_cols=199 Identities=16% Similarity=0.249 Sum_probs=158.6
Q ss_pred ccccccccCccCcchhhhhHHHHHHHHh-hhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCC
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITKN-FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~Kn-~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~ 189 (464)
+.+|+++.|-..+..++.+.+...+... .....|+++|+|+|||||||||||+||+|||++++++ +|+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~v 223 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYI 223 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcccc
Confidence 3456777765444444444333322222 2234599999999999999999999999999999988 899
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 012418 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269 (464)
Q Consensus 190 Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~ 269 (464)
|+++++||++|..| +..+||||||||||+++++|.... +..+..+..++..+++ +|||. ....+|+
T Consensus 224 Gese~~vr~lF~~A----r~~aP~IIFiDEiDai~~~R~~~~--~~~~~~~~~~l~~lL~-----~lDg~---~~~~~V~ 289 (405)
T 4b4t_J 224 GEGSRMVRELFVMA----REHAPSIIFMDEIDSIGSTRVEGS--GGGDSEVQRTMLELLN-----QLDGF---ETSKNIK 289 (405)
T ss_dssp THHHHHHHHHHHHH----HHTCSEEEEEESSSCCTTSCSCSS--SGGGGHHHHHHHHHHH-----HHHTT---TCCCCEE
T ss_pred chHHHHHHHHHHHH----HHhCCceEeeecchhhccCCCCCC--CCCcHHHHHHHHHHHH-----hhhcc---CCCCCeE
Confidence 99999999999999 999999999999999998876322 2222333344444444 77787 6678899
Q ss_pred EEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 270 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 270 VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
||+|||+|+.|||||+||||||+.|++ |+.++|.+|++.++.+ .+++.+.|++.|+||+|+||..
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~ 360 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKG 360 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHH
Confidence 999999999999999999999999996 9999999998877654 4677889999999999999963
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-38 Score=331.17 Aligned_cols=198 Identities=20% Similarity=0.298 Sum_probs=156.0
Q ss_pred cccccccCccCcchhhhhHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCC
Q 012418 123 YSLDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAG 190 (464)
Q Consensus 123 ~~f~n~~~~~~i~~~~~d~~~~~i~K-n~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~G 190 (464)
.+|+++.|-..+..++.+.+...+.. .+....|+++|+|||||||||||||+||+|||++++++ +|+|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCc
Confidence 45677766544444444333222211 12234599999999999999999999999999999987 8999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceE
Q 012418 191 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270 (464)
Q Consensus 191 e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~V 270 (464)
++++++|.+|..| +..+||||||||||++++.|...... ....+..++..+++ ++||. ....+|+|
T Consensus 259 esek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~~~--~~~~~~~~l~~LL~-----~lDg~---~~~~~ViV 324 (437)
T 4b4t_I 259 DGPRLCRQIFKVA----GENAPSIVFIDEIDAIGTKRYDSNSG--GEREIQRTMLELLN-----QLDGF---DDRGDVKV 324 (437)
T ss_dssp HHHHHHHHHHHHH----HHTCSEEEEEEEESSSSCCCSCSSCS--SCCHHHHHHHHHHH-----HHHHC---CCSSSEEE
T ss_pred hHHHHHHHHHHHH----HhcCCcEEEEehhhhhcccCCCCCCC--ccHHHHHHHHHHHH-----HhhCc---CCCCCEEE
Confidence 9999999999999 99999999999999999888632221 12223333444444 66676 66788999
Q ss_pred EEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 271 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 271 IaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
|+|||+++.|||||+||||||+.|++ |+.++|.+|++.++.. .+++.+.|++.|+||+|+||..
T Consensus 325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~ 394 (437)
T 4b4t_I 325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQA 394 (437)
T ss_dssp EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHH
T ss_pred EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHH
Confidence 99999999999999999999999996 9999999998877654 4677889999999999999974
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-38 Score=330.67 Aligned_cols=199 Identities=19% Similarity=0.282 Sum_probs=159.5
Q ss_pred ccccccccCccCcchhhhhHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCC
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~K-n~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~ 189 (464)
+.+|+++.|-..+..++.+.+...+.. ......|+++|+|||||||||||||+||+|||++++++ +|+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 356788777654555554433332221 12234599999999999999999999999999999987 899
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 012418 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269 (464)
Q Consensus 190 Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~ 269 (464)
|++++++|.+|..| +..+||||||||+|+++..|.... ......+..++..+++ +|||. ....+|+
T Consensus 285 Gesek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~--~~~~~~~~~~l~~lL~-----~lDg~---~~~~~Vi 350 (467)
T 4b4t_H 285 GEGARMVRELFEMA----RTKKACIIFFDEIDAVGGARFDDG--AGGDNEVQRTMLELIT-----QLDGF---DPRGNIK 350 (467)
T ss_dssp SHHHHHHHHHHHHH----HHTCSEEEEEECCTTTSBCCSSSS--CGGGGHHHHHHHHHHH-----HHHSS---CCTTTEE
T ss_pred CHHHHHHHHHHHHH----HhcCCceEeecccccccccccCcC--CCccHHHHHHHHHHHH-----Hhhcc---CCCCcEE
Confidence 99999999999999 999999999999999998876322 2222333444444554 67777 6778899
Q ss_pred EEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 270 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 270 VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
||+|||+++.|||||+||||||+.|++ |+.++|.+|++.+++. .+++.+.|++.|+||+|+||..
T Consensus 351 VIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 351 VMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRS 421 (467)
T ss_dssp EEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred EEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHH
Confidence 999999999999999999999999996 9999999998877654 4677889999999999999963
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-38 Score=330.82 Aligned_cols=199 Identities=20% Similarity=0.317 Sum_probs=160.5
Q ss_pred ccccccccCccCcchhhhhHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCC
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~K-n~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~ 189 (464)
..+|+++.|-..+..++.+.+...+.. ..+...|+++|+|+|||||||||||++|+|||++++++ +|+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYI 256 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCS
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhccc
Confidence 346678777644444444433322221 12234599999999999999999999999999999987 899
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 012418 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269 (464)
Q Consensus 190 Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~ 269 (464)
|++++++|.+|..| +..+||||||||||++++.|.. ......+.+..++..+++ +|||. ....+|+
T Consensus 257 Gese~~ir~lF~~A----~~~aP~IifiDEiDal~~~R~~--~~~~~~~~~~~~~~~lL~-----~ldg~---~~~~~Vi 322 (434)
T 4b4t_M 257 GEGAKLVRDAFALA----KEKAPTIIFIDELDAIGTKRFD--SEKSGDREVQRTMLELLN-----QLDGF---SSDDRVK 322 (434)
T ss_dssp SHHHHHHHHHHHHH----HHHCSEEEEEECTHHHHCCCSS--GGGGTTHHHHHHHHHHHH-----HHTTS---CSSCSSE
T ss_pred chHHHHHHHHHHHH----HhcCCeEEeecchhhhhhccCC--CCCCCchHHHHHHHHHHH-----Hhhcc---CCCCCEE
Confidence 99999999999999 8899999999999999988863 223334455555555565 78888 6678899
Q ss_pred EEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcC----CCCCChhHHHHHhcCCChhhHHH
Q 012418 270 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR----TDNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 270 VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~----~~~v~~~~la~lt~gfsgadLd~ 334 (464)
||+|||+|+.|||||+||||||+.|++ |+.++|.+|++.+++ ..+++++.|++.|+||+|+||..
T Consensus 323 VIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~ 393 (434)
T 4b4t_M 323 VLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKA 393 (434)
T ss_dssp EEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHH
T ss_pred EEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999996 999999999876553 46788899999999999999964
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-38 Score=329.16 Aligned_cols=199 Identities=24% Similarity=0.362 Sum_probs=157.3
Q ss_pred ccccccccCccCcchhhhhHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCC
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~K-n~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~ 189 (464)
..+|+++.|-..+..++.+.+...+.. ..+...|+++|+|||||||||||||+||+|||++++++ +|+
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYI 256 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSS
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccc
Confidence 345677777544444444433322221 12234599999999999999999999999999999987 899
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 012418 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269 (464)
Q Consensus 190 Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~ 269 (464)
|+++++++.+|..| +..+||||||||||+++++|..... ..++.+..++..++. +|||. ....+|+
T Consensus 257 Gese~~ir~~F~~A----~~~~P~IifiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~-----~lDg~---~~~~~vi 322 (437)
T 4b4t_L 257 GESARIIREMFAYA----KEHEPCIIFMDEVDAIGGRRFSEGT--SADREIQRTLMELLT-----QMDGF---DNLGQTK 322 (437)
T ss_dssp SHHHHHHHHHHHHH----HHSCSEEEEEECCCSSSCCCSSSCC--SSTTHHHHHHHHHHH-----HHHSS---SCTTSSE
T ss_pred hHHHHHHHHHHHHH----HhcCCceeeeecccccccccccCCC--CcchHHHHHHHHHHH-----Hhhcc---cCCCCeE
Confidence 99999999999999 9999999999999999988763222 222333334444444 77777 6678899
Q ss_pred EEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcC----CCCCChhHHHHHhcCCChhhHHH
Q 012418 270 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR----TDNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 270 VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~----~~~v~~~~la~lt~gfsgadLd~ 334 (464)
||+|||+|+.|||||+||||||+.|++ |+.++|.+|++.++. ..+++.+.|++.|+||+|+||..
T Consensus 323 vI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~ 393 (437)
T 4b4t_L 323 IIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRN 393 (437)
T ss_dssp EEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHH
T ss_pred EEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999996 999999999887654 35678889999999999999964
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-37 Score=321.63 Aligned_cols=196 Identities=17% Similarity=0.254 Sum_probs=156.3
Q ss_pred cccccccCccCcchhhhhHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCC
Q 012418 123 YSLDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAG 190 (464)
Q Consensus 123 ~~f~n~~~~~~i~~~~~d~~~~~i~K-n~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~G 190 (464)
.+|+++.|-..+..++.+.+...+.. .+....|+++|+|+|||||||||||++|+|||++++++ +|+|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 45677776544444444433322221 22234599999999999999999999999999999987 8999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCC--ccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCc
Q 012418 191 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 268 (464)
Q Consensus 191 e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~--~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V 268 (464)
+++++|+++|..| +..+||||||||+|++++.|.... .....+++++++|. +|||. ....+|
T Consensus 249 e~e~~ir~lF~~A----~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~---------~ldg~---~~~~~v 312 (428)
T 4b4t_K 249 EGPRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLT---------QMDGF---DQSTNV 312 (428)
T ss_dssp HHHHHHHHHHHHH----HHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHH---------HHHHS---CSSCSE
T ss_pred hhHHHHHHHHHHH----HHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHH---------HhhCC---CCCCCE
Confidence 9999999999999 999999999999999998875222 22234556666552 66677 566789
Q ss_pred eEEEEeCCCCCCchhhccCCcceEEEeC---CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 269 PIIVTGNDFSTLYAPLIRDGRMEKFYWA---PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 269 ~VIaTTN~~~~LDpALlRpGRfD~~i~i---P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
+||+|||+++.|||||+||||||+.|++ |+.++|.+|++.++.. .+++.+.|++.|+||+|+||..
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~ 385 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA 385 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHH
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHH
Confidence 9999999999999999999999999986 7999999998776643 4677889999999999999963
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.7e-37 Score=341.04 Aligned_cols=237 Identities=20% Similarity=0.290 Sum_probs=137.4
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
.|+++|+|+|||||||||||++|++||++++.+ +|+|+++++||++|..| +..+||||||||||+
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~A----r~~~P~IifiDEiDs 581 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDS 581 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHH----HTTCSEEEECSCGGG
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHH----HHcCCceeechhhhH
Confidence 489999999999999999999999999999987 99999999999999999 999999999999999
Q ss_pred cccCCCCC--CccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CC
Q 012418 223 GAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 298 (464)
Q Consensus 223 l~~~r~~~--~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~ 298 (464)
+++.|+.. ....+.+++++++| ++|||. ....+|+||+|||+|+.||+||+||||||+.|++ |+
T Consensus 582 l~~~R~~~~~~~~~~~~rv~~~lL---------~~mdg~---~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd 649 (806)
T 3cf2_A 582 IAKARGGNIGDGGGAADRVINQIL---------TEMDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp CC--------------CHHHHHHH---------HHHHSS---CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC----
T ss_pred HhhccCCCCCCCchHHHHHHHHHH---------HHHhCC---CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcC
Confidence 99887632 33456778899888 467777 6677899999999999999999999999999996 99
Q ss_pred HHHHHHHHHhhcCCC----CCChhHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHHhchhhhhhhhhcC-CCCCCCc
Q 012418 299 REDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNS-KEGPPTF 373 (464)
Q Consensus 299 ~eeR~eIl~~~~~~~----~v~~~~la~lt~gfsgadLd~~~alra~~~~~~i~~~i~~~~~e~l~~~l~~~-~~~~~~~ 373 (464)
.++|.+|++.++++. +++.+.|++.|+||||+||.. ++..+...++++.+............... .+.....
T Consensus 650 ~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~---l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (806)
T 3cf2_A 650 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE---ICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDD 726 (806)
T ss_dssp -CHHHHTTTTTSSCC--CCC----------------CHHH---HHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHH---HHHHHHHHHHHHHHHhhhhhhhhhccCcccccccccc
Confidence 999999998887653 566779999999999999973 34444445555554322111100000000 0001111
Q ss_pred CCCccCHHHHHHHhHh---hHHHHhhhhhhhHHHHHhch
Q 012418 374 EQPKMTLDKLLEYGRM---LVQEQENVKRVQLADKYLSE 409 (464)
Q Consensus 374 ~~~~~t~~~Lleag~~---lv~Eqe~v~~~~l~~~yl~~ 409 (464)
..+.++.+++.+|... .+.+.+...|.++.++|-+.
T Consensus 727 ~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 727 PVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp -CCC----CCTTTC---------------CCCC------
T ss_pred ccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 2345666666655444 35666666666666666554
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.4e-33 Score=308.15 Aligned_cols=211 Identities=21% Similarity=0.277 Sum_probs=168.4
Q ss_pred ccccccccCccCcchhhhhHHHHHHHHh-hhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCC
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITKN-FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~Kn-~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~ 189 (464)
..+|+++.|-.....++.+.+...+... .....|+++|+|||||||||||||+||++||++++.+ +|.
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 4467887776555555554433322222 2235699999999999999999999999999999987 899
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 012418 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269 (464)
Q Consensus 190 Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~ 269 (464)
|++++.++++|..| +..+||||||||||++++.++ ........++++++| .+|+|. ....+|+
T Consensus 280 gese~~lr~lF~~A----~~~~PsIIfIDEiDal~~~r~-~~~~~~~~riv~~LL---------~~mdg~---~~~~~V~ 342 (806)
T 3cf2_A 280 GESESNLRKAFEEA----EKNAPAIIFIDELDAIAPKRE-KTHGEVERRIVSQLL---------TLMDGL---KQRAHVI 342 (806)
T ss_dssp THHHHHHHHHHHHH----TTSCSEEEEEESGGGTCCTTT-TCCCTTHHHHHHHHH---------THHHHC---CGGGCEE
T ss_pred hHHHHHHHHHHHHH----HHcCCeEEEEehhcccccccC-CCCChHHHHHHHHHH---------HHHhcc---cccCCEE
Confidence 99999999999999 999999999999999999877 344566677777776 245555 4557899
Q ss_pred EEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHHHHHHHhhhh
Q 012418 270 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVY 343 (464)
Q Consensus 270 VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~~~alra~~~ 343 (464)
||+|||+++.||++|+||||||+.|++ |+.++|.+|++.++.. .+++.+.|++.|+||+|+||.. |+..+.
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~---Lv~eA~ 419 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA---LCSEAA 419 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHH---HHHHHH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHH---HHHHHH
Confidence 999999999999999999999999996 9999999999887754 5677889999999999999974 343344
Q ss_pred HHHHHHHHH
Q 012418 344 DDEVRKWIS 352 (464)
Q Consensus 344 ~~~i~~~i~ 352 (464)
..++++.+.
T Consensus 420 ~~A~~r~~~ 428 (806)
T 3cf2_A 420 LQAIRKKMD 428 (806)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhccc
Confidence 444554443
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=247.53 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=155.3
Q ss_pred ccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-CCC-----------CCC
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-GIN-----------GNA 189 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~el-g~~-----------~~~ 189 (464)
..+|+++.|...+...+.+.+...+....+...+..+|+++|||||||||||++|+++|+++ +.+ ++.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~ 87 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWL 87 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhh
Confidence 34568887764443333332222221112222346778999999999999999999999998 544 688
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 012418 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269 (464)
Q Consensus 190 Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~ 269 (464)
|+.++.++.+|..| +..+|+||||||||.+.+.+.. .......++++++|.. ++|.. ....+|+
T Consensus 88 g~~~~~~~~lf~~a----~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~---------ld~~~--~~~~~v~ 151 (322)
T 1xwi_A 88 GESEKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQ---------MQGVG--VDNDGIL 151 (322)
T ss_dssp CSCHHHHHHHHHHH----HHTSSEEEEEETTTGGGCCSSS-CCTTHHHHHHHHHHHH---------HHCSS--SCCTTEE
T ss_pred hHHHHHHHHHHHHH----HhcCCcEEEeecHHHhcccccc-ccchHHHHHHHHHHHH---------Hhccc--ccCCCEE
Confidence 99999999999988 8889999999999999887763 3445666777776643 33331 2357899
Q ss_pred EEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCC--C---hhHHHHHhcCCChhhHHHHHHHHhhh
Q 012418 270 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV--P---KEDIVKLVDTFPGQSIDFFGALRARV 342 (464)
Q Consensus 270 VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v--~---~~~la~lt~gfsgadLd~~~alra~~ 342 (464)
||+|||+++.||++|+| ||++.+++ |+.++|.+|++.++..... + .+.|++.++||+|+||.. |+..+
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~---l~~~A 226 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISI---IVRDA 226 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHH---HHHHH
T ss_pred EEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHH
Confidence 99999999999999999 99998886 9999999999888765443 2 448899999999999974 44444
Q ss_pred hHHHHHHHHH
Q 012418 343 YDDEVRKWIS 352 (464)
Q Consensus 343 ~~~~i~~~i~ 352 (464)
...++++.+.
T Consensus 227 ~~~a~r~~~~ 236 (322)
T 1xwi_A 227 LMQPVRKVQS 236 (322)
T ss_dssp HTHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555666543
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=1.6e-28 Score=243.45 Aligned_cols=197 Identities=20% Similarity=0.309 Sum_probs=146.2
Q ss_pred ccccccccCccCcchhhhhHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCC
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~K-n~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~ 189 (464)
.++|+++.|...+...+.+.+...+.. ......++++++++|||||||||||++|+++|++++.+ .+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~ 90 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 90 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence 456688877533333332221111100 01112378899999999999999999999999999876 566
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCC--CccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCC
Q 012418 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267 (464)
Q Consensus 190 Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~--~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~ 267 (464)
|+.++.++.+|..| +...||||||||||.+...++.. .......+.++++| +.++ +. ....+
T Consensus 91 g~~~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL-~~l~--------~~---~~~~~ 154 (301)
T 3cf0_A 91 GESEANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL-TEMD--------GM---STKKN 154 (301)
T ss_dssp TTCTTHHHHHHHHH----HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHH-HHHH--------SS---CTTSS
T ss_pred CchHHHHHHHHHHH----HhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHH-HHhh--------cc---cCCCC
Confidence 88888899999988 78899999999999997654321 12233445666655 3333 33 34567
Q ss_pred ceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 268 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 268 V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
|+||+|||+++.||++++|+|||++.+++ |+.++|.+|++.++.. .+++.+.++..+.||+|++|..
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~ 227 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 227 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999986 9999999998887754 3567789999999999998864
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=244.71 Aligned_cols=195 Identities=21% Similarity=0.340 Sum_probs=138.4
Q ss_pred cccccccCccCcchhhhhHHHHHHH-HhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCC
Q 012418 123 YSLDNTLDGLYIAPAFMDKVVVHIT-KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAG 190 (464)
Q Consensus 123 ~~f~n~~~~~~i~~~~~d~~~~~i~-Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~G 190 (464)
.+|+++.|-..+...+.+.+..... +..+...++.+|+|+||+||||||||+|+++||++++.+ .+.|
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~ 86 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG 86 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhh
Confidence 3456766643333333222221111 122234588999999999999999999999999998764 4567
Q ss_pred ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceE
Q 012418 191 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270 (464)
Q Consensus 191 e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~V 270 (464)
+.++.++.+|..+ +...||++||||||.+...++. .......+.+++++. +|+|. .....+++
T Consensus 87 ~~~~~i~~vf~~a----~~~~p~i~~~Deid~~~~~r~~-~~~~~~~~~~~~~l~---------~Lsgg---~~~~~~i~ 149 (274)
T 2x8a_A 87 ESERAVRQVFQRA----KNSAPCVIFFDEVDALCPRRSD-RETGASVRVVNQLLT---------EMDGL---EARQQVFI 149 (274)
T ss_dssp HHHHHHHHHHHHH----HHTCSEEEEEETCTTTCC----------CTTHHHHHHH---------HHHTC---CSTTCEEE
T ss_pred HHHHHHHHHHHHH----HhcCCCeEeeehhhhhhcccCC-CcchHHHHHHHHHHH---------hhhcc---cccCCEEE
Confidence 7788888999887 7889999999999998766542 122223345555552 45555 45567899
Q ss_pred EEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcC-------CCCCChhHHHHH--hcCCChhhHHH
Q 012418 271 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR-------TDNVPKEDIVKL--VDTFPGQSIDF 334 (464)
Q Consensus 271 IaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~-------~~~v~~~~la~l--t~gfsgadLd~ 334 (464)
+++||+|+.||+|++||||||+.+++ |+.++|.+|++.++. ..+++.+.|+.. ++||+|+||..
T Consensus 150 ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~ 224 (274)
T 2x8a_A 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSA 224 (274)
T ss_dssp EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHH
T ss_pred EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHH
Confidence 99999999999999999999999996 999999999987763 245677788886 45999999974
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=2.1e-28 Score=244.55 Aligned_cols=213 Identities=18% Similarity=0.234 Sum_probs=155.5
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCC
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~ 189 (464)
...+|+++.|...+...+.+.+........+...+.++++++|||||||||||++|++||++++.+ .+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 92 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTG
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhccc
Confidence 345678888864443333332222221112223466788999999999999999999999999876 788
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 012418 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269 (464)
Q Consensus 190 Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~ 269 (464)
|+.++.++.+|..| +..+|+||||||||.+...+.. .+.....+.++++|.. ++ +. .....+|+
T Consensus 93 g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~-l~--------~~--~~~~~~v~ 156 (322)
T 3eie_A 93 GESEKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQ-MN--------GV--GNDSQGVL 156 (322)
T ss_dssp GGHHHHHHHHHHHH----HHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHH-HG--------GG--GTSCCCEE
T ss_pred chHHHHHHHHHHHH----HhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHHHHH-hc--------cc--cccCCceE
Confidence 99999999999988 8889999999999999887652 3444556666666632 22 33 12456799
Q ss_pred EEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCC--C---hhHHHHHhcCCChhhHHHHHHHHhhh
Q 012418 270 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV--P---KEDIVKLVDTFPGQSIDFFGALRARV 342 (464)
Q Consensus 270 VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v--~---~~~la~lt~gfsgadLd~~~alra~~ 342 (464)
||+|||+++.||++|+| ||++.+++ |+.++|.+|++.++..... + .+.|++.++||+|++|. .++..+
T Consensus 157 vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~---~l~~~a 231 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIA---VVVKDA 231 (322)
T ss_dssp EEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHH---HHHHHH
T ss_pred EEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHH
Confidence 99999999999999999 99999886 9999999999988776543 2 34889999999999997 345555
Q ss_pred hHHHHHHHHHHh
Q 012418 343 YDDEVRKWISEV 354 (464)
Q Consensus 343 ~~~~i~~~i~~~ 354 (464)
...++++.....
T Consensus 232 ~~~a~r~~~~~~ 243 (322)
T 3eie_A 232 LMQPIRKIQSAT 243 (322)
T ss_dssp TTHHHHHHHHCE
T ss_pred HHHHHHHHhhhh
Confidence 556666665543
No 14
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=1.4e-28 Score=260.52 Aligned_cols=197 Identities=20% Similarity=0.279 Sum_probs=146.5
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhh--hhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------C
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNF--LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------G 187 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~--l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~ 187 (464)
...+|+++.|......++.+. + ...++. +...|.++|+|+||+||||||||+||++||++++.+ .
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~-v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEV-V-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHH-H-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCHHHhCCcHHHHHHHHHH-H-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 345678888763333232221 1 112221 124588999999999999999999999999999987 6
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCC--ccchhhHHHHHHHHhhhcCCCcccCCCccccCCC
Q 012418 188 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265 (464)
Q Consensus 188 ~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~--~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~ 265 (464)
+.|..+..++.+|..| +..+||||||||||++...++... ......+.++++|. +++|. ...
T Consensus 89 ~~g~~~~~~r~lf~~A----~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~---------~ld~~---~~~ 152 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQA----KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLV---------EMDGF---DSK 152 (476)
T ss_dssp CTTHHHHHHHHHHHHH----HHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHH---------HHHHS---CGG
T ss_pred HhcccHHHHHHHHHHH----HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHH---------HHhcc---CCC
Confidence 7888888899999988 888999999999999987765211 11223345555553 33344 334
Q ss_pred CCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHHH
Q 012418 266 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 266 ~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~~ 335 (464)
.+|+||+|||+++.||++++||||||+.+.+ |+.++|.+|++.++.. .+++.+.|++.+.||+|++|..+
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~l 228 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENL 228 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHH
Confidence 6789999999999999999999999999986 9999999998776654 45667789999999999999743
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.95 E-value=6.9e-27 Score=237.69 Aligned_cols=209 Identities=18% Similarity=0.230 Sum_probs=146.9
Q ss_pred ccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCC
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAG 190 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~G 190 (464)
..+|+++.|...+...+.+.+...+....+...+.+++++||||||||||||++|+++|++++.+ .+.|
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g 126 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 126 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC--
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcc
Confidence 34567877764443333332222222222223366888999999999999999999999999876 7889
Q ss_pred ChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceE
Q 012418 191 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 270 (464)
Q Consensus 191 e~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~V 270 (464)
+.++.++.+|..| +..+|+||||||||.+.+.+.. .+.....++++++|. .++ +. .....+|+|
T Consensus 127 ~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~ll~-~l~--------~~--~~~~~~v~v 190 (355)
T 2qp9_X 127 ESEKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLV-QMN--------GV--GNDSQGVLV 190 (355)
T ss_dssp -CHHHHHHHHHHH----HHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHH-HHH--------HC--C---CCEEE
T ss_pred hHHHHHHHHHHHH----HHcCCeEEEEechHhhcccCCC-CcchHHHHHHHHHHH-Hhh--------cc--cccCCCeEE
Confidence 9999999999988 8889999999999999887652 344555666666653 333 22 123467999
Q ss_pred EEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCC--C---hhHHHHHhcCCChhhHHHHHHHHhhhh
Q 012418 271 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV--P---KEDIVKLVDTFPGQSIDFFGALRARVY 343 (464)
Q Consensus 271 IaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v--~---~~~la~lt~gfsgadLd~~~alra~~~ 343 (464)
|+|||+++.||++++| ||++.+++ |+.++|.+|++.++..... + .+.|++.++||+|++|.. ++..+.
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~---l~~~A~ 265 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV---VVKDAL 265 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHH---HHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHH
Confidence 9999999999999999 99999886 9999999999888765542 2 448999999999999974 333444
Q ss_pred HHHHHHHH
Q 012418 344 DDEVRKWI 351 (464)
Q Consensus 344 ~~~i~~~i 351 (464)
..++++..
T Consensus 266 ~~a~~~~~ 273 (355)
T 2qp9_X 266 MQPIRKIQ 273 (355)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.7e-26 Score=224.19 Aligned_cols=199 Identities=20% Similarity=0.308 Sum_probs=147.3
Q ss_pred ccccccccCccCcchhhhhHHHHHHH-HhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCC
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHIT-KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNA 189 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~-Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~ 189 (464)
.++|+++.|...+...+.+.+..... ...+...|+..++++|||||||||||++|+++|++++.+ .+.
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~ 92 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFI 92 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCST
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhcc
Confidence 45678888753222222221111110 111123478899999999999999999999999999876 677
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 012418 190 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 269 (464)
Q Consensus 190 Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~ 269 (464)
|+....++.+|..+ +...|+||||||+|.+..++.+. ...........|..+++ ++++. ....+++
T Consensus 93 ~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~l~~ll~-----~~~~~---~~~~~~~ 158 (285)
T 3h4m_A 93 GEGASLVKDIFKLA----KEKAPSIIFIDEIDAIAAKRTDA--LTGGDREVQRTLMQLLA-----EMDGF---DARGDVK 158 (285)
T ss_dssp THHHHHHHHHHHHH----HHTCSEEEEEETTHHHHBCCSSS--CCGGGGHHHHHHHHHHH-----HHHTT---CSSSSEE
T ss_pred chHHHHHHHHHHHH----HHcCCeEEEEECHHHhcccCccc--cCCccHHHHHHHHHHHH-----HhhCC---CCCCCEE
Confidence 88888888888888 88899999999999998776522 12222334444555554 33334 3456799
Q ss_pred EEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 270 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 270 VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
||+|||+++.||++++|++||+..+.+ |+.++|.+|++.++.. ..++.+.++..+.||++++|..
T Consensus 159 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 159 IIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp EEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHH
T ss_pred EEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 999999999999999999999998886 9999999998877654 3456779999999999999863
No 17
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=7.7e-27 Score=222.90 Aligned_cols=165 Identities=23% Similarity=0.375 Sum_probs=119.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
.|++.|+++|||||||||||++|+++|++++.+ .+.|.....++.+|..+ ....|+||||||+|.
T Consensus 34 ~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 34 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEA----RARAPCIVYIDEIDA 109 (262)
T ss_dssp --CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHH----HHTCSEEEEEECC--
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHH----HhcCCeEEEEeCcch
Confidence 477899999999999999999999999999877 45677778888888887 777899999999999
Q ss_pred cccCCCCCCc---cchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--C
Q 012418 223 GAGRMGGTTQ---YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 297 (464)
Q Consensus 223 l~~~r~~~~~---~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P 297 (464)
+...+..... .......++++|. ++++. ....+++||+|||.++.||++++|+|||+..+++ |
T Consensus 110 l~~~~~~~~~~~~~~~~~~~l~~ll~---------~~~~~---~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p 177 (262)
T 2qz4_A 110 VGKKRSTTMSGFSNTEEEQTLNQLLV---------EMDGM---GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP 177 (262)
T ss_dssp -----------------CHHHHHHHH---------HHHTC---CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSC
T ss_pred hhccccccccCccchhHHHHHHHHHH---------HhhCc---CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCc
Confidence 9776542110 1112233444442 22223 2346789999999999999999999999999986 9
Q ss_pred CHHHHHHHHHhhcCCCCCC------hhHHHHHhcCCChhhHHH
Q 012418 298 TREDRIGVCSGIFRTDNVP------KEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 298 ~~eeR~eIl~~~~~~~~v~------~~~la~lt~gfsgadLd~ 334 (464)
+.++|.+|++.++...++. .+.+++.+.||++++|..
T Consensus 178 ~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 178 TLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp CHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHH
Confidence 9999999988776544433 247888899999988863
No 18
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=3.7e-26 Score=219.69 Aligned_cols=196 Identities=19% Similarity=0.265 Sum_probs=142.6
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhh--hhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------C
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNF--LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------G 187 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~--l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~ 187 (464)
..++|+++.|...+...+.+. + ..+++. +...+.+.|+++||+||||||||++|+++|++++.+ .
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAEL-V-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHH-H-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCHHHhcCcHHHHHHHHHH-H-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 445678888864333333221 1 112221 123467889999999999999999999999999866 5
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCc--cchhhHHHHHHHHhhhcCCCcccCCCccccCCC
Q 012418 188 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265 (464)
Q Consensus 188 ~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~--~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~ 265 (464)
+.|+..+.++.+|..| +...|++|||||+|.+...+..... .....+.++++|. ++++. ...
T Consensus 85 ~~~~~~~~~~~~~~~a----~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~---------~l~~~---~~~ 148 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV---------EMDGF---EGN 148 (257)
T ss_dssp CCCCCHHHHHHHHHHH----HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHH---------HHHTC---CSS
T ss_pred hhhhhHHHHHHHHHHH----HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHH---------HhhCc---ccC
Confidence 6788888899999988 7788999999999999876542111 1122345555553 23333 345
Q ss_pred CCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCC----CCChhHHHHHhcCCChhhHHH
Q 012418 266 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 266 ~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~----~v~~~~la~lt~gfsgadLd~ 334 (464)
.+++||+|||+++.||++++|+|||++.+++ |+.++|.+|++.++... +++...++..+.||++++|..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHH
Confidence 6789999999999999999999999999886 99999999988776543 444668899999999999863
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=1.1e-26 Score=247.43 Aligned_cols=197 Identities=19% Similarity=0.273 Sum_probs=147.1
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhh--hhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------C
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNF--LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------G 187 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~--l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~ 187 (464)
..++|+++.|...+..++.+. + ...++. +...+.++|+|+||+||||||||+||++||++++.+ .
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~l-v-~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEI-V-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHH-H-HHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHH-H-HHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 567789988863333332221 1 112221 123578899999999999999999999999998866 4
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCC--ccchhhHHHHHHHHhhhcCCCcccCCCccccCCC
Q 012418 188 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265 (464)
Q Consensus 188 ~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~--~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~ 265 (464)
+.|...+.++.+|+.+ +...||||||||||.+...+.... ......+.++++| . +|+|. ...
T Consensus 104 ~~g~~~~~v~~lfq~a----~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL----~-----~Ldg~---~~~ 167 (499)
T 2dhr_A 104 FVGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL----V-----EMDGF---EKD 167 (499)
T ss_dssp CTTHHHHHHHHHTTTS----SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH----H-----HGGGC---CSS
T ss_pred hhhhHHHHHHHHHHHH----HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHH----H-----Hhccc---ccC
Confidence 6777778888888877 667899999999999977654211 1112234444444 3 55665 455
Q ss_pred CCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHHH
Q 012418 266 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 266 ~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~~ 335 (464)
..+++|+|||+|+.||++|+||||||+.+.+ |+.++|.+|++.+... ++++...|+..+.||+|++|..+
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~l 243 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENL 243 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHH
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHH
Confidence 6789999999999999999999999999996 9999999999877654 34556789999999999999743
No 20
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.94 E-value=3.3e-26 Score=239.52 Aligned_cols=177 Identities=20% Similarity=0.273 Sum_probs=137.2
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh-CCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM-GIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el-g~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
+..+|+++|||||||||||++|++||+++ +.+ .+.|+.++.++.+|..| +..+|+||||||||.
T Consensus 163 ~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~ 238 (444)
T 2zan_A 163 KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLA----RENKPSIIFIDEIDS 238 (444)
T ss_dssp GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHH----HHSCSEEEEESCTTT
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHH----HHcCCeEEEEechHh
Confidence 35678999999999999999999999998 544 57788888899999988 888999999999999
Q ss_pred cccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHH
Q 012418 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 300 (464)
Q Consensus 223 l~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~e 300 (464)
+.+.+.. .......++++++| .++++.. ....+|+||+|||+++.||++|+| ||++.+++ |+.+
T Consensus 239 l~~~~~~-~~~~~~~~~~~~lL---------~~l~~~~--~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~ 304 (444)
T 2zan_A 239 LCGSRSE-NESEAARRIKTEFL---------VQMQGVG--VDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAH 304 (444)
T ss_dssp TCCCSSC-CCCGGGHHHHHHHH---------TTTTCSS--CCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHH
T ss_pred hccCCCC-ccccHHHHHHHHHH---------HHHhCcc--cCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHH
Confidence 9887663 34455667777666 2555541 135789999999999999999999 99998886 9999
Q ss_pred HHHHHHHhhcCCCCC-----ChhHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHH
Q 012418 301 DRIGVCSGIFRTDNV-----PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 352 (464)
Q Consensus 301 eR~eIl~~~~~~~~v-----~~~~la~lt~gfsgadLd~~~alra~~~~~~i~~~i~ 352 (464)
+|.+|++.++..... +.+.|++.++||+|++|.. ++..+...++++.+.
T Consensus 305 ~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~---l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 305 ARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI---IVRDALMQPVRKVQS 358 (444)
T ss_dssp HHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHH---HHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHh
Confidence 999999888765432 3458999999999999974 344444555666554
No 21
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=4.4e-25 Score=211.86 Aligned_cols=197 Identities=18% Similarity=0.276 Sum_probs=139.1
Q ss_pred cccccccccCccCcchhhhhHHHHHH-HHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CC
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHI-TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GN 188 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i-~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~ 188 (464)
..++|+++.+...+..++.+ +.... -...+...++..|+|++|+||||||||+|++++|++++.+ .+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 45677888875333322221 11111 0112233578899999999999999999999999998765 45
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCC--CccchhhHHHHHHHHhhhcCCCcccCCCccccCCCC
Q 012418 189 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 266 (464)
Q Consensus 189 ~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~--~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~ 266 (464)
.++..+.++.+|+.+ ....|+++||||||.+...+... .......+.+++++. +++|. ....
T Consensus 90 ~~~~~~~i~~~~~~~----~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~---------~l~g~---~~~~ 153 (254)
T 1ixz_A 90 VGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV---------EMDGF---EKDT 153 (254)
T ss_dssp TTHHHHHHHHHHHHH----TTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHH---------HHHTC---CTTC
T ss_pred hhHHHHHHHHHHHHH----HhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHH---------HHhCC---CCCC
Confidence 666677788888877 66789999999999987665411 011122334444442 34444 3445
Q ss_pred CceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 267 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 267 ~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
.++++++||+|+.||++++|+|||++.+++ |+.++|.+|++.+... .+++...|++.+.||+|++|..
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~ 227 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 227 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 678999999999999999999999999996 9999999998766543 4556779999999999999863
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.92 E-value=1.9e-24 Score=229.44 Aligned_cols=164 Identities=24% Similarity=0.339 Sum_probs=136.1
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
.|.++|+++|||||||||||++|++||++++.+ .+.|+....++.+|..| ...+|++|||||||.
T Consensus 233 ~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A----~~~~p~iLfLDEId~ 308 (489)
T 3hu3_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDELDA 308 (489)
T ss_dssp HTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHH----HHTCSEEEEEESHHH
T ss_pred cCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHH----HhcCCcEEEecchhh
Confidence 478999999999999999999999999999876 78899999999999988 888999999999999
Q ss_pred cccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHH
Q 012418 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 300 (464)
Q Consensus 223 l~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~e 300 (464)
+.+.+. ........+++++ |+++++ +. ....++.||+|||+++.||++++|+|||++.+++ |+.+
T Consensus 309 l~~~~~-~~~~~~~~~~~~~-LL~~ld--------~~---~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~ 375 (489)
T 3hu3_A 309 IAPKRE-KTHGEVERRIVSQ-LLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (489)
T ss_dssp HCBCTT-SCCCHHHHHHHHH-HHHHHH--------HS---CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHH
T ss_pred hccccc-cccchHHHHHHHH-HHHHhh--------cc---ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHH
Confidence 998765 2333344444444 445554 22 3456789999999999999999999999999886 9999
Q ss_pred HHHHHHHhhcCCC----CCChhHHHHHhcCCChhhHHH
Q 012418 301 DRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 301 eR~eIl~~~~~~~----~v~~~~la~lt~gfsgadLd~ 334 (464)
+|.+|++.++... +++.+.++..+.||++++|..
T Consensus 376 eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp HHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHH
Confidence 9999998776543 455679999999999999863
No 23
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=99.91 E-value=5.8e-25 Score=186.50 Aligned_cols=103 Identities=86% Similarity=1.362 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHhhcCCCCCChhHHHHHhcCCChhhHHHHHHHHhhhhHHHHHHHHHHhchhhhhhhhhcCCCCCCCcCCC
Q 012418 297 PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 376 (464)
Q Consensus 297 P~~eeR~eIl~~~~~~~~v~~~~la~lt~gfsgadLd~~~alra~~~~~~i~~~i~~~~~e~l~~~l~~~~~~~~~~~~~ 376 (464)
-++++|+.|++++|.+++++.++|.++++.|++|+||||||||+|+||++|++||.++|.|+++++|+|+++++|.|++|
T Consensus 5 ~treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRsR~YDd~Vr~wI~~vG~e~ig~~Lvns~e~~P~F~~P 84 (107)
T 3thg_A 5 FTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQP 84 (107)
T ss_dssp CCHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred ccHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHHHHhHHHHHHHHHHhCHHHHhHHHHcCCCCCCCCCCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHhHhhHHHHhhhhh
Q 012418 377 KMTLDKLLEYGRMLVQEQENVKR 399 (464)
Q Consensus 377 ~~t~~~Lleag~~lv~Eqe~v~~ 399 (464)
.+|+++|+++|+++++||++|+|
T Consensus 85 ~~tl~~Lle~G~~Lv~EQ~~V~~ 107 (107)
T 3thg_A 85 KMTIDKLLGYGGMLVQEQENVKR 107 (107)
T ss_dssp CCCHHHHHHHHHHHHTTC-----
T ss_pred cCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999975
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.91 E-value=4.8e-26 Score=219.52 Aligned_cols=197 Identities=18% Similarity=0.255 Sum_probs=136.9
Q ss_pred cccccccccCccCcchhhhhHHHHHHH-HhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CC
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHIT-KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GN 188 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~-Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~ 188 (464)
..++|+++.|...+...+.+.+. .+. ...+...+.+.|+++|||||||||||++|+++|++++.+ .+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 34567888887555554443211 111 111223477889999999999999999999999999876 34
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCc---cchhhHHHHHHHHhhhcCCCcccCCCccccCCC
Q 012418 189 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ---YTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 265 (464)
Q Consensus 189 ~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~---~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~ 265 (464)
.|.....++.+|..| ....|+||||||+|.+...+..... .....+.++ .++. .+++.. ...
T Consensus 85 ~~~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~----~ll~-----~l~~~~--~~~ 149 (268)
T 2r62_A 85 VGLGASRVRDLFETA----KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLN----QLLA-----EMDGFG--SEN 149 (268)
T ss_dssp SSSCSSSSSTTHHHH----HHSCSCEEEESCGGGTTC----------CCCSCSSTT----TTTT-----TTTCSS--CSC
T ss_pred cchHHHHHHHHHHHH----HhcCCeEEEEeChhhhcccccccccCCCchhHHHHHH----HHHH-----HhhCcc--cCC
Confidence 566666677888887 7778999999999999776431110 000011112 2222 333331 133
Q ss_pred CCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHH
Q 012418 266 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSID 333 (464)
Q Consensus 266 ~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd 333 (464)
.+++||+|||+++.||++++|+|||+..+++ |+.++|.+|++.++.. .+++.+.|++.+.||+|++|.
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~ 223 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLA 223 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHH
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHH
Confidence 5689999999999999999999999988886 9999999999877654 345567889999999998885
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.91 E-value=7.1e-24 Score=215.29 Aligned_cols=163 Identities=19% Similarity=0.330 Sum_probs=126.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccc
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 224 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~ 224 (464)
.++++++|||||||||||++|+++|++++.+ .+.|+..+.++.+|..+ +..+|+||||||||.+.
T Consensus 114 ~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~ 189 (357)
T 3d8b_A 114 RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVA----RCQQPAVIFIDEIDSLL 189 (357)
T ss_dssp GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHH----HHTCSEEEEEETHHHHT
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHH----HhcCCeEEEEeCchhhh
Confidence 3678999999999999999999999999876 67888888999999888 78889999999999998
Q ss_pred cCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHH
Q 012418 225 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 302 (464)
Q Consensus 225 ~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR 302 (464)
..+.. .......+.++++|.. ++ |. ......++.||+|||+++.|+++++| ||+..+++ |+.++|
T Consensus 190 ~~~~~-~~~~~~~~~~~~lL~~-l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r 256 (357)
T 3d8b_A 190 SQRGD-GEHESSRRIKTEFLVQ-LD--------GA-TTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASAR 256 (357)
T ss_dssp BC-------CHHHHHHHHHHHH-HH--------C-----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHH
T ss_pred ccCCC-CcchHHHHHHHHHHHH-Hh--------cc-cccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHH
Confidence 87652 2333445555555533 33 22 11234678999999999999999999 99988775 999999
Q ss_pred HHHHHhhcCCCC--CC---hhHHHHHhcCCChhhHHHH
Q 012418 303 IGVCSGIFRTDN--VP---KEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 303 ~eIl~~~~~~~~--v~---~~~la~lt~gfsgadLd~~ 335 (464)
.+|++.++...+ ++ .+.|++.+.||++++|..+
T Consensus 257 ~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 257 KQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp HHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHH
Confidence 999988775543 33 3378899999999999743
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=3.1e-26 Score=256.05 Aligned_cols=165 Identities=22% Similarity=0.381 Sum_probs=134.5
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
.++.++.++|||||||||||+||++||++++.+ +|+|+.++.++.+|+.| +...||||||||||+
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~vl~iDEid~ 581 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDS 581 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHH----HHHCSBCCCCSSHHH
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHH----HhcCCeEEEEEChhh
Confidence 367888999999999999999999999999876 68899999999999998 888899999999999
Q ss_pred cccCCCCCCc--cchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CC
Q 012418 223 GAGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 298 (464)
Q Consensus 223 l~~~r~~~~~--~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~ 298 (464)
+...+++... .....++++++| .+|++. ....+|+||+|||+++.||+||+|||||++.+++ |+
T Consensus 582 l~~~r~~~~~~~~~~~~~v~~~LL---------~~ld~~---~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~ 649 (806)
T 1ypw_A 582 IAKARGGNIGDGGGAADRVINQIL---------TEMDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp HCCTTTTCCSHHHHHHHHHHHHHH---------TTCC---------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCC
T ss_pred hhhhccCCCCCcchhHHHHHHHHH---------HHHhcc---cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCC
Confidence 9887763211 223445555554 266676 5567899999999999999999999999998886 99
Q ss_pred HHHHHHHHHhhcCCC----CCChhHHHHHhcCCChhhHHH
Q 012418 299 REDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 299 ~eeR~eIl~~~~~~~----~v~~~~la~lt~gfsgadLd~ 334 (464)
.++|.+|++.++... +++.+.|++.+.||+|++|..
T Consensus 650 ~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~ 689 (806)
T 1ypw_A 650 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 689 (806)
T ss_dssp CSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHH
Confidence 999999998887543 455668999999999999974
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=6.6e-24 Score=207.08 Aligned_cols=193 Identities=19% Similarity=0.270 Sum_probs=139.2
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhh-----hhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC---------
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNF-----LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------- 186 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~-----l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------- 186 (464)
..++|+++.+...+..++. ++.+.| +...++..|+|++|+||||||||+|+++||++++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~-----~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELK-----EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHH-----HHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCHHHhCChHHHHHHHH-----HHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 4567788877633322222 222222 223578889999999999999999999999998765
Q ss_pred --CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCC--ccchhhHHHHHHHHhhhcCCCcccCCCcccc
Q 012418 187 --GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 262 (464)
Q Consensus 187 --~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~--~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~ 262 (464)
.+.+...+.++.+|+.+ ....|+++||||||.+...+.... ......+.+++++ . +++|.
T Consensus 110 ~~~~~~~~~~~i~~~~~~~----~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll----~-----~lsgg--- 173 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL----V-----EMDGF--- 173 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHH----HTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH----H-----HHTTC---
T ss_pred HHHHhhHHHHHHHHHHHHH----HhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH----H-----HHhCC---
Confidence 45566667777888877 667899999999999876543110 1111223344433 2 45554
Q ss_pred CCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 263 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 263 ~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
.....++++++||+|+.||++++|++||++.+++ |+.++|.+|++.+... ++++...++..+.||+|++|..
T Consensus 174 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~ 251 (278)
T 1iy2_A 174 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 251 (278)
T ss_dssp CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 3445678999999999999999999999999996 9999999998876543 3455778999999999999863
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=6.8e-24 Score=207.40 Aligned_cols=162 Identities=17% Similarity=0.318 Sum_probs=123.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccccccc
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~ 225 (464)
.+++++|||||||||||++|+++|++++.+ .+.|+....++.+|..+ +..+|+||||||+|.+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVA----RHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHH----HHTCSEEEEEETGGGTSB
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHH----HHcCCcEEEeccHHHhcc
Confidence 467999999999999999999999999865 67788888999999888 788999999999999987
Q ss_pred CCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHH
Q 012418 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRI 303 (464)
Q Consensus 226 ~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~ 303 (464)
.+.. .......+..+.+|.. ++ +........++.||+|||+++.|+++++| ||+..+++ |+.++|.
T Consensus 128 ~~~~-~~~~~~~~~~~~ll~~-l~--------~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~ 195 (297)
T 3b9p_A 128 ERSS-SEHEASRRLKTEFLVE-FD--------GLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRE 195 (297)
T ss_dssp CC------CCSHHHHHHHHHH-HH--------HCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHH
T ss_pred cccc-CcchHHHHHHHHHHHH-Hh--------cccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHH
Confidence 7652 2233445555555533 33 12111223568999999999999999999 89888885 9999999
Q ss_pred HHHHhhcCCCC--CC---hhHHHHHhcCCChhhHHH
Q 012418 304 GVCSGIFRTDN--VP---KEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 304 eIl~~~~~~~~--v~---~~~la~lt~gfsgadLd~ 334 (464)
+|++.++...+ ++ .+.|++.+.||++++|..
T Consensus 196 ~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp HHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 99887765433 33 337888999999999863
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.91 E-value=1.6e-23 Score=214.28 Aligned_cols=162 Identities=19% Similarity=0.317 Sum_probs=118.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccccccc
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 225 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~ 225 (464)
.++++||||||||||||++|++||++++.+ .+.|+....++.+|..+ +..+|+||||||||.+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVA----RELQPSIIFIDQVDSLLC 221 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHH----HHSSSEEEEEETGGGGC-
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHH----HhcCCeEEEEECchhhcc
Confidence 457999999999999999999999998876 56788888899999888 888999999999999987
Q ss_pred CCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHH
Q 012418 226 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRI 303 (464)
Q Consensus 226 ~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~ 303 (464)
.+.. .......+..+.+|.. ++ |. ......+|+||+|||+++.|+++++| ||+..+++ |+.++|.
T Consensus 222 ~~~~-~~~~~~~~~~~~ll~~-l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~ 288 (389)
T 3vfd_A 222 ERRE-GEHDASRRLKTEFLIE-FD--------GV-QSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288 (389)
T ss_dssp --------CTHHHHHHHHHHH-HH--------HH-C-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHH
T ss_pred cCCC-ccchHHHHHHHHHHHH-hh--------cc-cccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHH
Confidence 7652 3334455555555533 22 22 11234678999999999999999999 99887775 9999999
Q ss_pred HHHHhhcCCCCC--Ch---hHHHHHhcCCChhhHHHH
Q 012418 304 GVCSGIFRTDNV--PK---EDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 304 eIl~~~~~~~~v--~~---~~la~lt~gfsgadLd~~ 335 (464)
+|++.++...+. +. +.|++.+.||++++|..+
T Consensus 289 ~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp HHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 999888766443 32 378889999999998643
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.86 E-value=7.3e-21 Score=212.77 Aligned_cols=199 Identities=22% Similarity=0.310 Sum_probs=152.2
Q ss_pred ccccccccccCccCcchhhhhHHHHHHHH-hhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------C
Q 012418 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------G 187 (464)
Q Consensus 120 ~r~~~f~n~~~~~~i~~~~~d~~~~~i~K-n~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----------~ 187 (464)
...++|+++.|.......+.+.+...+.. ..+...+++++.++||+||||||||+||++||++++.+ .
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 34567788888655554544333222221 12234588999999999999999999999999998765 6
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCC
Q 012418 188 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267 (464)
Q Consensus 188 ~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~ 267 (464)
+.|+.++.++.+|..+ ....|++|||||||.+...++ ........+.+. .|+++++ |. .....
T Consensus 278 ~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~-~~~~~~~~~~~~-~Ll~ll~--------g~---~~~~~ 340 (806)
T 1ypw_A 278 LAGESESNLRKAFEEA----EKNAPAIIFIDELDAIAPKRE-KTHGEVERRIVS-QLLTLMD--------GL---KQRAH 340 (806)
T ss_dssp STTHHHHHHHHHHHHH----HHHCSEEEEEESGGGTSCTTS-CCCSHHHHHHHH-HHHHHHH--------SS---CTTSC
T ss_pred hhhhHHHHHHHHHHHH----HhcCCcEEEeccHHHhhhccc-cccchHHHHHHH-HHHHHhh--------hh---ccccc
Confidence 7888999999999988 777899999999999988765 233334444444 4445554 33 34567
Q ss_pred ceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHHH
Q 012418 268 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 268 V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~~ 335 (464)
+.+|+|||+++.||+++.|+|||++.+.+ |+.++|.+|++.+... .+++...++..+.+|+++++..+
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l 414 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 414 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHH
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHH
Confidence 89999999999999999999999998885 9999999998876654 34556789999999999998643
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.81 E-value=2.5e-22 Score=210.35 Aligned_cols=163 Identities=8% Similarity=0.042 Sum_probs=101.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhC--CC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccc
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMG--IN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 220 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg--~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEI 220 (464)
.+..+|+++|||||||||||++|+++|++++ .+ ++.|+.+. +++.|..|.. .+..+||||||||+
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~-~~~~~~~il~iDEi 135 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIG-LRIKETKEVYEGEV 135 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEE-EEEEEEEEEEEEEE
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHh-hhhcCCcEEEEech
Confidence 4667789999999999999999999999999 44 78888887 7888876522 14678999999999
Q ss_pred cccccCCCCCCccchhhHHHH-------------------HHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCc
Q 012418 221 DAGAGRMGGTTQYTVNNQMVN-------------------ATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 281 (464)
Q Consensus 221 Dal~~~r~~~~~~~~~~~~v~-------------------~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LD 281 (464)
|++++.+....... ...... +++..+.. .+. .....|+|++|||+++.+|
T Consensus 136 d~l~~~r~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~-------~~~---~~~~~v~i~attn~~~~ld 204 (456)
T 2c9o_A 136 TELTPCETENPMGG-YGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK-------ERV---EAGDVIYIEANSGAVKRQG 204 (456)
T ss_dssp EEEEEC---------------CEEEEEEETTEEEEEEECHHHHHHHHH-------TTC---CTTEEEEEETTTCCEEEEE
T ss_pred hhcccccCCCCCCC-cchHHHHHHHHHhccccchhHhhhHHHHHHHhh-------ccC---CCCCEEEEEcCCCCcccCC
Confidence 99998776321111 111111 11111110 111 2233466679999999999
Q ss_pred hhhccCCcceE----EEeCCC--HHHHHHHHHhhcCCCCCChhHHHHHhcCCChhhHHH
Q 012418 282 APLIRDGRMEK----FYWAPT--REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 282 pALlRpGRfD~----~i~iP~--~eeR~eIl~~~~~~~~v~~~~la~lt~gfsgadLd~ 334 (464)
++++|+||||+ .+..|+ .++|.+|++.+... +.+.+++.++| |+||..
T Consensus 205 ~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~---dl~~~a~~t~g--gadl~~ 258 (456)
T 2c9o_A 205 RCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH---DLDVANARPQG--GQDILS 258 (456)
T ss_dssp EETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH---HHHHTC-------------
T ss_pred hhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH---HHHHHHHhCCC--hhHHHH
Confidence 99999999999 333464 46788886655432 46677777888 787753
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.77 E-value=2.7e-18 Score=166.40 Aligned_cols=162 Identities=11% Similarity=0.102 Sum_probs=109.0
Q ss_pred HhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC--------CCCCChH----HHHHHHHHHHHHHHHhCCcEEE
Q 012418 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------GNAGEPA----KLIRQRYREAADIIKKGKMCCL 215 (464)
Q Consensus 148 Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------~~~Ge~~----k~Ir~~F~~A~~~~~~~~P~IL 215 (464)
.+.+...+.+++.++|||||||||||++|+++|++++.+ .+.|... ..++.+|..+ ....+++|
T Consensus 53 ~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~vl 128 (272)
T 1d2n_A 53 VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDA----YKSQLSCV 128 (272)
T ss_dssp HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHH----HTSSEEEE
T ss_pred HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHH----HhcCCcEE
Confidence 334444566788999999999999999999999999877 4455544 4556666665 67789999
Q ss_pred EeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEe
Q 012418 216 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 295 (464)
Q Consensus 216 fIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~ 295 (464)
||||||.+.+.+.... ... ..+.++|..+++ +. .....++.||+|||.++.|++..++ +||+..+.
T Consensus 129 ~iDEid~l~~~~~~~~--~~~-~~~l~~L~~~~~--------~~--~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~ 194 (272)
T 1d2n_A 129 VVDDIERLLDYVPIGP--RFS-NLVLQALLVLLK--------KA--PPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIH 194 (272)
T ss_dssp EECCHHHHTTCBTTTT--BCC-HHHHHHHHHHTT--------CC--CSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEE
T ss_pred EEEChhhhhccCCCCh--hHH-HHHHHHHHHHhc--------Cc--cCCCCCEEEEEecCChhhcchhhhh-cccceEEc
Confidence 9999999977654221 122 334444544444 11 1134567899999999999884443 49999999
Q ss_pred CCCHHHHHHHHHhhcCCCCCChh---HHHHHhcCC
Q 012418 296 APTREDRIGVCSGIFRTDNVPKE---DIVKLVDTF 327 (464)
Q Consensus 296 iP~~eeR~eIl~~~~~~~~v~~~---~la~lt~gf 327 (464)
+|...+|.+|...+.....++.+ .|++.+.||
T Consensus 195 ~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 195 VPNIATGEQLLEALELLGNFKDKERTTIAQQVKGK 229 (272)
T ss_dssp CCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTTS
T ss_pred CCCccHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC
Confidence 98766665554333222334443 556666665
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.69 E-value=2.2e-16 Score=154.47 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=99.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCC-------C-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEe
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI-------N-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFI 217 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~-------~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfI 217 (464)
-+++..+|||||||||||++|+++|++++. + .+.|.....++..|..+ .++||||
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-------~~~vl~i 136 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-------MGGVLFI 136 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-------TTSEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-------CCCEEEE
Confidence 455678999999999999999999999832 2 56788888777777765 4689999
Q ss_pred ccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccCCcceE
Q 012418 218 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEK 292 (464)
Q Consensus 218 DEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRpGRfD~ 292 (464)
||+|.+...+.+. .. ...+...|+++++ ....++.||+|||..+ .++|+|++ ||+.
T Consensus 137 DEid~l~~~~~~~---~~-~~~~~~~Ll~~l~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~ 197 (309)
T 3syl_A 137 DEAYYLYRPDNER---DY-GQEAIEILLQVME-------------NNRDDLVVILAGYADRMENFFQSNPGFRS--RIAH 197 (309)
T ss_dssp ETGGGSCCCC------CC-THHHHHHHHHHHH-------------HCTTTCEEEEEECHHHHHHHHHHSTTHHH--HEEE
T ss_pred EChhhhccCCCcc---cc-cHHHHHHHHHHHh-------------cCCCCEEEEEeCChHHHHHHHhhCHHHHH--hCCe
Confidence 9999998654311 11 2334445666666 3346778999998764 35789998 8988
Q ss_pred EEeC--CCHHHHHHHHHhhcCCCC
Q 012418 293 FYWA--PTREDRIGVCSGIFRTDN 314 (464)
Q Consensus 293 ~i~i--P~~eeR~eIl~~~~~~~~ 314 (464)
.+.+ |+.+++.+|++.++...+
T Consensus 198 ~i~~~~~~~~~~~~il~~~l~~~~ 221 (309)
T 3syl_A 198 HIEFPDYSDEELFEIAGHMLDDQN 221 (309)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTT
T ss_pred EEEcCCcCHHHHHHHHHHHHHHcC
Confidence 8886 899999999988776443
No 34
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.67 E-value=2.4e-16 Score=169.05 Aligned_cols=155 Identities=19% Similarity=0.294 Sum_probs=100.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC--------------------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEe
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------GNAGEPAKLIRQRYREAADIIKKGKMCCLFI 217 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfI 217 (464)
.+..+||+||||||||+||++||+.++.+ .++|.....+.+.|..| ....| ||||
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a----~~~~~-vl~l 181 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA----GKLNP-VFLL 181 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTT----CSSSE-EEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHh----hccCC-EEEE
Confidence 46789999999999999999999998755 23333344444455544 44555 9999
Q ss_pred ccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccC--CCCCceEEEEeCCCCCCchhhccCCcceEEEe
Q 012418 218 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE--ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 295 (464)
Q Consensus 218 DEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~--~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~ 295 (464)
||||++...+.+. ....|++++|+.++..+...+... ...++.||+|||+++.|||+|+| ||+. +.
T Consensus 182 DEid~l~~~~~~~---------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~v-i~ 249 (543)
T 3m6a_A 182 DEIDKMSSDFRGD---------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RMEI-IN 249 (543)
T ss_dssp EESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEEE-EE
T ss_pred hhhhhhhhhhccC---------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcce-ee
Confidence 9999997664321 224466777755544443322222 23678999999999999999999 8964 56
Q ss_pred C--CCHHHHHHHHHhhcCC------------CCCChhHHHHHhcCCCh
Q 012418 296 A--PTREDRIGVCSGIFRT------------DNVPKEDIVKLVDTFPG 329 (464)
Q Consensus 296 i--P~~eeR~eIl~~~~~~------------~~v~~~~la~lt~gfsg 329 (464)
+ |+.+++.+|++.++.. -.++.+.+..++..|++
T Consensus 250 ~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~ 297 (543)
T 3m6a_A 250 IAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTR 297 (543)
T ss_dssp CCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCC
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCCh
Confidence 5 9999999998776521 12345566666665553
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.66 E-value=4.5e-15 Score=148.59 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=85.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-------------C----------------------------------
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------G---------------------------------- 187 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-------------~---------------------------------- 187 (464)
+..+++++|||||||||||++|+++|++++.. .
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld 145 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID 145 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhh
Confidence 44457899999999999999999999999752 0
Q ss_pred ---------------CCCChHHHHHHHHHHHHHHHH-hC----CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhh
Q 012418 188 ---------------NAGEPAKLIRQRYREAADIIK-KG----KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 247 (464)
Q Consensus 188 ---------------~~Ge~~k~Ir~~F~~A~~~~~-~~----~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~l 247 (464)
+.|+....+++.+..+..... .+ +|+||||||+|.+.. .....|+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~-------------~~~~~L~~~ 212 (368)
T 3uk6_A 146 VINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI-------------ESFSFLNRA 212 (368)
T ss_dssp HHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-------------HHHHHHHHH
T ss_pred hhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-------------HHHHHHHHH
Confidence 112223456666666644332 22 388999999997642 122345455
Q ss_pred hcCCCcccCCCccccCCCCCceEEEEe-----------CCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCC
Q 012418 248 ADNPTNVQLPGMYNQEENPRVPIIVTG-----------NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD 313 (464)
Q Consensus 248 lD~~~~v~ldG~~~~~~~~~V~VIaTT-----------N~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~ 313 (464)
++ .....+++++|. |.+..|+++|++ ||.. +.+ |+.+++.+|++..+...
T Consensus 213 le-------------~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 213 LE-------------SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp TT-------------CTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHT
T ss_pred hh-------------CcCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHc
Confidence 54 222234333333 358899999998 7776 454 89999999988766543
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.65 E-value=8.6e-17 Score=168.99 Aligned_cols=123 Identities=12% Similarity=0.103 Sum_probs=49.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------------CCCCC-hHHHHHHHHHHHHHHHHhCCcEEEEeccccccc
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------------GNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 224 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~Ge-~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~ 224 (464)
+|+++||+||||||||++|+++|++++.+ .|+|+ .+..++.+|..|... +++||+|.+.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~--------~~~De~d~~~ 120 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL--------VRQQEIAKNR 120 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH--------HHHHHHHSCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc--------chhhhhhhhh
Confidence 57899999999999999999999999887 48885 789999999988433 3489999875
Q ss_pred cCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEE-eCCCCCCchhhccCCcceEEEeC--CCHH-
Q 012418 225 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT-GNDFSTLYAPLIRDGRMEKFYWA--PTRE- 300 (464)
Q Consensus 225 ~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaT-TN~~~~LDpALlRpGRfD~~i~i--P~~e- 300 (464)
... .....+++++++| .+|||.. ....| +++ ||+++.||+||+|+||||+.|++ |+..
T Consensus 121 ~~~----~~~~e~rvl~~LL---------~~~dg~~---~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~ 182 (444)
T 1g41_A 121 ARA----EDVAEERILDALL---------PPAKNQW---GEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc----hhhHHHHHHHHHH---------HHhhccc---ccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCcc
Confidence 442 2234566666666 3677773 23333 555 99999999999999999999997 7776
Q ss_pred HHHHHH
Q 012418 301 DRIGVC 306 (464)
Q Consensus 301 eR~eIl 306 (464)
.|.+|+
T Consensus 183 ~~~ei~ 188 (444)
T 1g41_A 183 MGVEIM 188 (444)
T ss_dssp ------
T ss_pred chhhhh
Confidence 577764
No 37
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.62 E-value=9.8e-16 Score=136.39 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=82.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----------CCC-------------CCCCChHHHHHHHHHHHHHHHHhCCcE
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GIN-------------GNAGEPAKLIRQRYREAADIIKKGKMC 213 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el----------g~~-------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ 213 (464)
..+..+||+||||||||++|+++++++ +.+ .+.|.....+++++..+ .+...++
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 117 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL---AKQEGNV 117 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHH---HHSTTTE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHH---hhcCCCe
Confidence 446789999999999999999999997 332 12222333444444433 2356789
Q ss_pred EEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccCC
Q 012418 214 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDG 288 (464)
Q Consensus 214 ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRpG 288 (464)
||||||+|.+........... +..+|..+++ ..++.+|+|||.++ .++++|+|
T Consensus 118 vl~iDe~~~l~~~~~~~~~~~-----~~~~l~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~-- 175 (195)
T 1jbk_A 118 ILFIDELHTMVGAGKADGAMD-----AGNMLKPALA---------------RGELHCVGATTLDEYRQYIEKDAALER-- 175 (195)
T ss_dssp EEEEETGGGGTT------CCC-----CHHHHHHHHH---------------TTSCCEEEEECHHHHHHHTTTCHHHHT--
T ss_pred EEEEeCHHHHhccCcccchHH-----HHHHHHHhhc---------------cCCeEEEEeCCHHHHHHHHhcCHHHHH--
Confidence 999999999875532111111 1223333333 24578999999987 78999998
Q ss_pred cceEEEeC--CCHHHHHHHH
Q 012418 289 RMEKFYWA--PTREDRIGVC 306 (464)
Q Consensus 289 RfD~~i~i--P~~eeR~eIl 306 (464)
||+. +.+ |+.++|.+|+
T Consensus 176 r~~~-i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 RFQK-VFVAEPSVEDTIAIL 194 (195)
T ss_dssp TEEE-EECCCCCHHHHHTTC
T ss_pred Hhce-eecCCCCHHHHHHHh
Confidence 8885 554 9999998875
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.61 E-value=9.4e-16 Score=148.98 Aligned_cols=146 Identities=18% Similarity=0.155 Sum_probs=100.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC------------CCCCC-hHHHHHHHHHHHHHHHH-hCCcEEEEeccccc
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------GNAGE-PAKLIRQRYREAADIIK-KGKMCCLFINDLDA 222 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~Ge-~~k~Ir~~F~~A~~~~~-~~~P~ILfIDEIDa 222 (464)
..|.++|||||||||||++|+++|++++.+ .+.|. ....+++++..+...+. ...++||||||+|.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 457899999999999999999999999876 23332 23456666654311112 23479999999999
Q ss_pred cccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEE----eCCCCCCchhhccCCcceEEEeC--
Q 012418 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT----GNDFSTLYAPLIRDGRMEKFYWA-- 296 (464)
Q Consensus 223 l~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaT----TN~~~~LDpALlRpGRfD~~i~i-- 296 (464)
+...... .........+...|+.++++.......+. ....++.+|+| ++.+..++++|++ ||+..+.+
T Consensus 128 l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~ 201 (310)
T 1ofh_A 128 ICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGM---VKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTA 201 (310)
T ss_dssp GSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTEE---EECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCC
T ss_pred cCccccc-cccchhHHHHHHHHHHHhcCCeEeccccc---ccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCC
Confidence 9776542 23344455556677777773221111111 23457788888 5688999999996 99977776
Q ss_pred CCHHHHHHHHHh
Q 012418 297 PTREDRIGVCSG 308 (464)
Q Consensus 297 P~~eeR~eIl~~ 308 (464)
|+.+++.+|++.
T Consensus 202 ~~~~~~~~il~~ 213 (310)
T 1ofh_A 202 LSAADFERILTE 213 (310)
T ss_dssp CCHHHHHHHHHS
T ss_pred cCHHHHHHHHHh
Confidence 899999999874
No 39
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.61 E-value=8.4e-15 Score=145.42 Aligned_cols=152 Identities=13% Similarity=0.078 Sum_probs=99.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 231 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~ 231 (464)
..+..+||+||||||||++|+++|++++.+ ...-.....+...+. ....+++|||||||.+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~vl~lDEi~~l~~------ 120 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILT------NLSEGDILFIDEIHRLSP------ 120 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHH------TCCTTCEEEEETGGGCCH------
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHH------hccCCCEEEEechhhcCH------
Confidence 456689999999999999999999999877 111122333333333 246789999999997742
Q ss_pred ccchhhHHHHHHHHhhhcCCCcccCCCc-----cccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHH
Q 012418 232 QYTVNNQMVNATLMNIADNPTNVQLPGM-----YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304 (464)
Q Consensus 232 ~~~~~~~~v~~~L~~llD~~~~v~ldG~-----~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~e 304 (464)
.....|++.+++....-+.+. ......+++.+|+|||+...++++|++ ||+..+.+ |+.+++.+
T Consensus 121 -------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~ 191 (338)
T 3pfi_A 121 -------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELAL 191 (338)
T ss_dssp -------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHH
T ss_pred -------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHH
Confidence 223445555553221111111 001122368999999999999999998 89888886 89999999
Q ss_pred HHHhhcCCCC--CChhHHHHHhcCCCh
Q 012418 305 VCSGIFRTDN--VPKEDIVKLVDTFPG 329 (464)
Q Consensus 305 Il~~~~~~~~--v~~~~la~lt~gfsg 329 (464)
|++.+....+ ++.+.+..+...++|
T Consensus 192 il~~~~~~~~~~~~~~~~~~l~~~~~G 218 (338)
T 3pfi_A 192 ILQKAALKLNKTCEEKAALEIAKRSRS 218 (338)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHCc
Confidence 9887765444 445545545444433
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.57 E-value=9.7e-16 Score=154.90 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=96.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC------------CCCCCh-HHHHHHHHHHHHHHHHhCCcEEEEecccccc
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------GNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAG 223 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~Ge~-~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal 223 (464)
.++.++||+||||||||++|++||++++.+ .+.|.. .+.++..|..+...+....++||||||||++
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l 128 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhh
Confidence 367899999999999999999999999887 144443 3445556655422223456899999999999
Q ss_pred ccCCCCC-CccchhhHHHHHHHHhhhcCCCcccC---CCccc------cCCCCCceEEEEeCCC----------CC----
Q 012418 224 AGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQL---PGMYN------QEENPRVPIIVTGNDF----------ST---- 279 (464)
Q Consensus 224 ~~~r~~~-~~~~~~~~~v~~~L~~llD~~~~v~l---dG~~~------~~~~~~V~VIaTTN~~----------~~---- 279 (464)
...+.+. ....+..+.+...|+++++ ...+.+ .|... -....++++|+|+|.. ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~ 207 (363)
T 3hws_A 129 SRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGI 207 (363)
T ss_dssp CCCSSCC---CHHHHHHHHHHHHHHHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC--
T ss_pred cccccccccccccchHHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccC
Confidence 7765422 1223334446777778887 222222 11100 0123556777777743 11
Q ss_pred -------------------------------CchhhccCCcceEEEeC--CCHHHHHHHHHh
Q 012418 280 -------------------------------LYAPLIRDGRMEKFYWA--PTREDRIGVCSG 308 (464)
Q Consensus 280 -------------------------------LDpALlRpGRfD~~i~i--P~~eeR~eIl~~ 308 (464)
+.|+|+. ||+.++.+ |+.+++.+|+..
T Consensus 208 gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 208 GFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ----------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred CccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHH
Confidence 7888885 99999875 899999999765
No 41
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.55 E-value=1.3e-14 Score=142.47 Aligned_cols=153 Identities=18% Similarity=0.137 Sum_probs=96.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 231 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~ 231 (464)
..+..+||+||||||||++|++++++++.+ ...-.....+...|..+ ...+++|||||+|.+...
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~~----- 105 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANS-----LEEGDILFIDEIHRLSRQ----- 105 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTT-----CCTTCEEEETTTTSCCHH-----
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHh-----ccCCCEEEEECCcccccc-----
Confidence 356789999999999999999999999876 11111222232222210 357899999999976421
Q ss_pred ccchhhHHHHHHHHhhhcCCCcccCCCcc-----ccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHH
Q 012418 232 QYTVNNQMVNATLMNIADNPTNVQLPGMY-----NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304 (464)
Q Consensus 232 ~~~~~~~~v~~~L~~llD~~~~v~ldG~~-----~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~e 304 (464)
....|++++++....-+.+.- ......++.+|+|||++..++++|++ ||+..+.+ |+.+++.+
T Consensus 106 --------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~ 175 (324)
T 1hqc_A 106 --------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQ 175 (324)
T ss_dssp --------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHH
T ss_pred --------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHH
Confidence 123344444422111111110 00112467899999999999999987 88766775 89999999
Q ss_pred HHHhhcCCCC--CChh---HHHHHhcCCCh
Q 012418 305 VCSGIFRTDN--VPKE---DIVKLVDTFPG 329 (464)
Q Consensus 305 Il~~~~~~~~--v~~~---~la~lt~gfsg 329 (464)
++..+....+ ++.+ .|++.+.|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r 205 (324)
T 1hqc_A 176 GVMRDARLLGVRITEEAALEIGRRSRGTMR 205 (324)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHSCSCHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHccCCHH
Confidence 9887765433 4444 45555555554
No 42
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.54 E-value=7.3e-14 Score=127.07 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=81.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC----------CCCCChHHHHHHHHHHHHHH--HHhCCcEEEEeccccccccCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN----------GNAGEPAKLIRQRYREAADI--IKKGKMCCLFINDLDAGAGRMG 228 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~----------~~~Ge~~k~Ir~~F~~A~~~--~~~~~P~ILfIDEIDal~~~r~ 228 (464)
.+||+||||||||++++++++++... .........++..+...... .....++||||||+|.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-- 117 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-- 117 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH--
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH--
Confidence 39999999999999999999986322 11111222333333322110 01367899999999986432
Q ss_pred CCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHH
Q 012418 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 306 (464)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl 306 (464)
....|..+++ ....++.+|+|||.+..+++++.+ |+. .+.+ |+.+++.+++
T Consensus 118 -----------~~~~l~~~l~-------------~~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l 170 (226)
T 2chg_A 118 -----------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRL 170 (226)
T ss_dssp -----------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHH
T ss_pred -----------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHH
Confidence 1233445554 223567899999999999999998 777 4555 7899999998
Q ss_pred HhhcC
Q 012418 307 SGIFR 311 (464)
Q Consensus 307 ~~~~~ 311 (464)
..++.
T Consensus 171 ~~~~~ 175 (226)
T 2chg_A 171 LEICE 175 (226)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 43
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.53 E-value=2.6e-14 Score=127.48 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=74.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----------CCC-------------CCCCChHHHHHHHHHHHHHHHH-hCCc
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GIN-------------GNAGEPAKLIRQRYREAADIIK-KGKM 212 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el----------g~~-------------~~~Ge~~k~Ir~~F~~A~~~~~-~~~P 212 (464)
..+..+||+||||||||++|+++++++ +.+ .+.|.....++.++..+ . ...|
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 116 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEV----QDAEGQ 116 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHH----HHTTTS
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHH----HhcCCc
Confidence 346789999999999999999999997 322 12222233344444433 4 3478
Q ss_pred EEEEeccccccccCCC-CCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhcc
Q 012418 213 CCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIR 286 (464)
Q Consensus 213 ~ILfIDEIDal~~~r~-~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlR 286 (464)
+||||||+|.+.+.+. ...+.. +...|..+++ ..++.+|+|||.++ .++++|+|
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~~-----~~~~l~~~~~---------------~~~~~ii~~~~~~~~~~~~~~~~~l~~ 176 (187)
T 2p65_A 117 VVMFIDEIHTVVGAGAVAEGALD-----AGNILKPMLA---------------RGELRCIGATTVSEYRQFIEKDKALER 176 (187)
T ss_dssp EEEEETTGGGGSSSSSSCTTSCC-----THHHHHHHHH---------------TTCSCEEEEECHHHHHHHTTTCHHHHH
T ss_pred eEEEEeCHHHhcccccccccchH-----HHHHHHHHHh---------------cCCeeEEEecCHHHHHHHHhccHHHHH
Confidence 9999999999975533 111111 2223333333 24578999999876 68999998
Q ss_pred CCcceEEEeC
Q 012418 287 DGRMEKFYWA 296 (464)
Q Consensus 287 pGRfD~~i~i 296 (464)
||+. +.+
T Consensus 177 --R~~~-i~i 183 (187)
T 2p65_A 177 --RFQQ-ILV 183 (187)
T ss_dssp --HEEE-EEC
T ss_pred --hcCc-ccC
Confidence 9996 665
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.51 E-value=5.2e-14 Score=139.11 Aligned_cols=142 Identities=18% Similarity=0.263 Sum_probs=96.6
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCCChHHHHH
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAGEPAKLIR 197 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~Ge~~k~Ir 197 (464)
+|+++++. ......+++++. .-+.|..+|++||||||||++|+++|++++.+ ...+ ...++
T Consensus 24 ~~~~ivg~---------~~~~~~l~~~l~--~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~--~~~i~ 90 (324)
T 3u61_B 24 TIDECILP---------AFDKETFKSITS--KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK--IDFVR 90 (324)
T ss_dssp STTTSCCC---------HHHHHHHHHHHH--TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC--HHHHH
T ss_pred CHHHHhCc---------HHHHHHHHHHHH--cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC--HHHHH
Confidence 56777776 223344555555 33567789999999999999999999999866 2222 45566
Q ss_pred HHHHHHHHHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC
Q 012418 198 QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276 (464)
Q Consensus 198 ~~F~~A~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~ 276 (464)
+.+........ ...++||||||+|.+.+. .....|..+++ ....++.+|+|||+
T Consensus 91 ~~~~~~~~~~~~~~~~~vliiDEi~~l~~~------------~~~~~L~~~le-------------~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 91 GPLTNFASAASFDGRQKVIVIDEFDRSGLA------------ESQRHLRSFME-------------AYSSNCSIIITANN 145 (324)
T ss_dssp THHHHHHHBCCCSSCEEEEEEESCCCGGGH------------HHHHHHHHHHH-------------HHGGGCEEEEEESS
T ss_pred HHHHHHHhhcccCCCCeEEEEECCcccCcH------------HHHHHHHHHHH-------------hCCCCcEEEEEeCC
Confidence 55554311111 237899999999987521 12234555555 22345789999999
Q ss_pred CCCCchhhccCCcceEEEeC--CCHHHHHHHH
Q 012418 277 FSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 306 (464)
Q Consensus 277 ~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl 306 (464)
+..++++|++ ||.. +.+ |+.++|.+|+
T Consensus 146 ~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il 174 (324)
T 3u61_B 146 IDGIIKPLQS--RCRV-ITFGQPTDEDKIEMM 174 (324)
T ss_dssp GGGSCTTHHH--HSEE-EECCCCCHHHHHHHH
T ss_pred ccccCHHHHh--hCcE-EEeCCCCHHHHHHHH
Confidence 9999999998 7754 554 8999876663
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.51 E-value=1.1e-13 Score=145.40 Aligned_cols=123 Identities=17% Similarity=0.242 Sum_probs=89.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC----CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccch
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTV 235 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~----~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~ 235 (464)
..+|||||||||||++|++||+.++.+ ...+...+.+++.+..+.......+++||||||||.+.....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q------- 123 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ------- 123 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH-------
Confidence 589999999999999999999999876 344556677888998886555567899999999998744321
Q ss_pred hhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEe--CCCCCCchhhccCCcceEEEe-CCCHHHHHHHHHhhcCC
Q 012418 236 NNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRT 312 (464)
Q Consensus 236 ~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTT--N~~~~LDpALlRpGRfD~~i~-iP~~eeR~eIl~~~~~~ 312 (464)
..|+..++ ...+.+|++| |....|+++|++ |+..+.. .|+.+++.+|++..+..
T Consensus 124 ------~~LL~~le---------------~~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 124 ------DAFLPHIE---------------DGTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp -------CCHHHHH---------------TTSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHh---------------cCceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 12444444 1346677666 555689999998 6664332 28999999998777654
No 46
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.49 E-value=2.3e-13 Score=124.80 Aligned_cols=143 Identities=12% Similarity=0.128 Sum_probs=91.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCCCC----------------------------C-CChHHHHHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINGN----------------------------A-GEPAKLIRQRYREAADII 207 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~----------------------------~-Ge~~k~Ir~~F~~A~~~~ 207 (464)
+.|..++|+||||||||+++++++++++.... . ......+++++..+....
T Consensus 43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (250)
T 1njg_A 43 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 122 (250)
T ss_dssp CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhch
Confidence 34568999999999999999999999854200 0 012233444443320000
Q ss_pred HhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccC
Q 012418 208 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRp 287 (464)
...+|.+|||||+|.+... ....|+.+++ ....++.+|+|||++..+++++++
T Consensus 123 ~~~~~~vlviDe~~~l~~~-------------~~~~l~~~l~-------------~~~~~~~~i~~t~~~~~~~~~l~~- 175 (250)
T 1njg_A 123 ARGRFKVYLIDEVHMLSRH-------------SFNALLKTLE-------------EPPEHVKFLLATTDPQKLPVTILS- 175 (250)
T ss_dssp SSSSSEEEEEETGGGSCHH-------------HHHHHHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT-
T ss_pred hcCCceEEEEECcccccHH-------------HHHHHHHHHh-------------cCCCceEEEEEeCChHhCCHHHHH-
Confidence 1346899999999976211 1233444554 234567899999999999999987
Q ss_pred CcceEEEeC--CCHHHHHHHHHhhcCCCC--CChh---HHHHHhcCCC
Q 012418 288 GRMEKFYWA--PTREDRIGVCSGIFRTDN--VPKE---DIVKLVDTFP 328 (464)
Q Consensus 288 GRfD~~i~i--P~~eeR~eIl~~~~~~~~--v~~~---~la~lt~gfs 328 (464)
|+ ..+.+ |+.++..+++..++...+ ++.+ .|++.+.|.+
T Consensus 176 -r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~ 221 (250)
T 1njg_A 176 -RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 221 (250)
T ss_dssp -TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCH
T ss_pred -Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCH
Confidence 55 34555 789999999887765433 3333 4555555543
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.48 E-value=1.7e-13 Score=144.18 Aligned_cols=133 Identities=18% Similarity=0.202 Sum_probs=89.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh----------CCC--------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecc
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GIN--------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 219 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el----------g~~--------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDE 219 (464)
.+..+||+||||||||++|+++|..+ +.+ .+.|+.+..++.+|..+ +...|+|||||
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~~----~~~~~~iLfiD- 274 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEI----RQAGNIILFID- 274 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHH----HTCCCCEEEEC-
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHHH----HhcCCeEEEEe-
Confidence 34578999999999999999999997 332 35666666777888877 77789999999
Q ss_pred ccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccCCcceEEE
Q 012418 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFY 294 (464)
Q Consensus 220 IDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRpGRfD~~i 294 (464)
+... ....|...+ ....+.+|+|||..+ .+|++|+| ||.. +
T Consensus 275 -----~~~~-----------a~~~L~~~L---------------~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i 320 (468)
T 3pxg_A 275 -----AAID-----------ASNILKPSL---------------ARGELQCIGATTLDEYRKYIEKDAALER--RFQP-I 320 (468)
T ss_dssp -----C-------------------CCCT---------------TSSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-E
T ss_pred -----Cchh-----------HHHHHHHhh---------------cCCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-c
Confidence 1110 112221111 234688999999998 79999999 8986 6
Q ss_pred eC--CCHHHHHHHHHhhcCC----CC--CChh---HHHHHhcCCCh
Q 012418 295 WA--PTREDRIGVCSGIFRT----DN--VPKE---DIVKLVDTFPG 329 (464)
Q Consensus 295 ~i--P~~eeR~eIl~~~~~~----~~--v~~~---~la~lt~gfsg 329 (464)
.+ |+.+++.+|++.+... .+ ++.+ .++.++.+|.+
T Consensus 321 ~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~ 366 (468)
T 3pxg_A 321 QVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 366 (468)
T ss_dssp ECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence 64 9999999999877654 33 3333 55555555543
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.48 E-value=1.2e-13 Score=136.92 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=96.4
Q ss_pred ccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCC-CCCCChHHHHH
Q 012418 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GIN-GNAGEPAKLIR 197 (464)
Q Consensus 122 ~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~el---g~~-~~~Ge~~k~Ir 197 (464)
.|+|++++.+. . .......++.+...++ +.+..++||||||||||+||+++++++ +.+ .++. ......
T Consensus 7 ~~~f~~fv~g~----~--~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~~~~~ 78 (324)
T 1l8q_A 7 KYTLENFIVGE----G--NRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-ADDFAQ 78 (324)
T ss_dssp TCCSSSCCCCT----T--THHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HHHHHH
T ss_pred CCCcccCCCCC----c--HHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HHHHHH
Confidence 56788876321 1 0223344556655554 456789999999999999999999998 555 1111 111111
Q ss_pred HHHHHH----H-HHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEE
Q 012418 198 QRYREA----A-DIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 271 (464)
Q Consensus 198 ~~F~~A----~-~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VI 271 (464)
+..... . .... ...++||||||+|.+.+.+. ..+.++.+++ .. ......+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~-----------~~~~l~~~l~---------~~--~~~~~~iii 136 (324)
T 1l8q_A 79 AMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKER-----------TQIEFFHIFN---------TL--YLLEKQIIL 136 (324)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHH-----------HHHHHHHHHH---------HH--HHTTCEEEE
T ss_pred HHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChH-----------HHHHHHHHHH---------HH--HHCCCeEEE
Confidence 111100 0 0001 23489999999998765321 1122333332 00 011223455
Q ss_pred EEeCCCC---CCchhhccCCcce--EEEeC-CCHHHHHHHHHhhcCCC--CCChhHHHHH
Q 012418 272 VTGNDFS---TLYAPLIRDGRME--KFYWA-PTREDRIGVCSGIFRTD--NVPKEDIVKL 323 (464)
Q Consensus 272 aTTN~~~---~LDpALlRpGRfD--~~i~i-P~~eeR~eIl~~~~~~~--~v~~~~la~l 323 (464)
+++|.+. .++++|++ ||+ ..+.+ |+.++|.+|++..+... .++.+.+..+
T Consensus 137 ~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l 194 (324)
T 1l8q_A 137 ASDRHPQKLDGVSDRLVS--RFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYL 194 (324)
T ss_dssp EESSCGGGCTTSCHHHHH--HHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred EecCChHHHHHhhhHhhh--cccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 5555555 68999997 675 66776 57899999988776533 4555543333
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.47 E-value=4.8e-13 Score=130.61 Aligned_cols=134 Identities=12% Similarity=0.109 Sum_probs=85.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC----------CCCCChHHHHHHHH------------HHHHHHHHhCCcEEE
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN----------GNAGEPAKLIRQRY------------REAADIIKKGKMCCL 215 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------~~~Ge~~k~Ir~~F------------~~A~~~~~~~~P~IL 215 (464)
++..+||+||||||||++|+++|+.+... .+.... ....+| ....+.++....+||
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl 123 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH--AVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVI 123 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTT--HHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccc--cHHHhcCCCCccccccccchHHHHHHhCCCeEE
Confidence 33579999999999999999999997432 111110 011111 011112245556999
Q ss_pred EeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC-------------------
Q 012418 216 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND------------------- 276 (464)
Q Consensus 216 fIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~------------------- 276 (464)
||||+|.+.. .+...|+.++++.....-.+. .....+++||+|||.
T Consensus 124 ~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~--~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~ 188 (311)
T 4fcw_A 124 LFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGR--TVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIR 188 (311)
T ss_dssp EEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSC--EEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHH
T ss_pred EEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCC--EEECCCcEEEEecccCHHHHHhhhcccccHHHHH
Confidence 9999997632 234456666663322211111 122346779999999
Q ss_pred -------CCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhc
Q 012418 277 -------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 277 -------~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~ 310 (464)
...++++|++ ||+..+.+ |+.+++.+|++.++
T Consensus 189 ~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 189 DEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp HHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 5678899986 99888875 88999999987655
No 50
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.46 E-value=3e-13 Score=149.64 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=83.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----------CCC--------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEec
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GIN--------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 218 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el----------g~~--------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfID 218 (464)
+.+..+||+||||||||++|+++|+.+ +.. .+.|+.+..++.+|..+ ....|+|||||
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~----~~~~~~iLfiD 274 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEI----RQAGNIILFID 274 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHH----HTCCCCEEEEC
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHHH----HhcCCEEEEEc
Confidence 345579999999999999999999997 333 45677777888888888 77889999999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccCCcceEE
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKF 293 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRpGRfD~~ 293 (464)
+... ....|... -....+.+|+|||..+ .+|++|+| ||..
T Consensus 275 ------~~~~-----------~~~~L~~~---------------l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~~- 319 (758)
T 3pxi_A 275 ------AAID-----------ASNILKPS---------------LARGELQCIGATTLDEYRKYIEKDAALER--RFQP- 319 (758)
T ss_dssp ------C-------------------CCC---------------TTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-
T ss_pred ------Cchh-----------HHHHHHHH---------------HhcCCEEEEeCCChHHHHHHhhccHHHHh--hCcE-
Confidence 1100 11122111 1245689999999999 79999999 8965
Q ss_pred EeC--CCHHHHHHHHHhhcCC
Q 012418 294 YWA--PTREDRIGVCSGIFRT 312 (464)
Q Consensus 294 i~i--P~~eeR~eIl~~~~~~ 312 (464)
+++ |+.+++.+|++.+...
T Consensus 320 i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 320 IQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EECCCCCHHHHHHHHHHTTTT
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 665 9999999999876543
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.46 E-value=2.4e-13 Score=152.61 Aligned_cols=126 Identities=19% Similarity=0.186 Sum_probs=81.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh----------CCC-------------CCCCChHHHHHHHHHHHHHHHHh-CCcE
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GIN-------------GNAGEPAKLIRQRYREAADIIKK-GKMC 213 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el----------g~~-------------~~~Ge~~k~Ir~~F~~A~~~~~~-~~P~ 213 (464)
.+.++||+||||||||++|+++|+++ +.+ .+.|+.+..++.+|..+ +. ..|+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~----~~~~~~~ 265 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEV----VQSQGEV 265 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHH----HTTCSSE
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHH----HhcCCCe
Confidence 34578999999999999999999997 433 45677777788887776 54 4789
Q ss_pred EEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC----CCchhhccCCc
Q 012418 214 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS----TLYAPLIRDGR 289 (464)
Q Consensus 214 ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~----~LDpALlRpGR 289 (464)
||||||+|.+.+....... ..+...|..++. ...+.+|+|||.++ .+|++|+| |
T Consensus 266 iL~IDEi~~l~~~~~~~g~-----~~~~~~L~~~l~---------------~~~i~~I~at~~~~~~~~~~d~aL~r--R 323 (854)
T 1qvr_A 266 ILFIDELHTVVGAGKAEGA-----VDAGNMLKPALA---------------RGELRLIGATTLDEYREIEKDPALER--R 323 (854)
T ss_dssp EEEECCC------------------------HHHHH---------------TTCCCEEEEECHHHHHHHTTCTTTCS--C
T ss_pred EEEEecHHHHhccCCccch-----HHHHHHHHHHHh---------------CCCeEEEEecCchHHhhhccCHHHHh--C
Confidence 9999999999765431111 112223333333 24578999999875 48999999 8
Q ss_pred ceEEEeC--CCHHHHHHHHHhhc
Q 012418 290 MEKFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 290 fD~~i~i--P~~eeR~eIl~~~~ 310 (464)
|+. +.+ |+.+++.+|++.+.
T Consensus 324 f~~-i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 324 FQP-VYVDEPTVEETISILRGLK 345 (854)
T ss_dssp CCC-EEECCCCHHHHHHHHHHHH
T ss_pred Cce-EEeCCCCHHHHHHHHHhhh
Confidence 887 454 99999999987554
No 52
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=1e-12 Score=127.94 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=100.9
Q ss_pred HHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC--------CCCC--ChHHHHHHHHHHHHHHHH---hCC
Q 012418 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------GNAG--EPAKLIRQRYREAADIIK---KGK 211 (464)
Q Consensus 145 ~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------~~~G--e~~k~Ir~~F~~A~~~~~---~~~ 211 (464)
..+++++... +.|. +|||||||+|||++|+++|+++... .... .....+++.+........ ..+
T Consensus 31 ~~l~~~l~~~--~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 107 (323)
T 1sxj_B 31 DRLQQIAKDG--NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGK 107 (323)
T ss_dssp HHHHHHHHSC--CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTC
T ss_pred HHHHHHHHcC--CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCC
Confidence 3344444432 3455 9999999999999999999996321 0111 124555655554411000 335
Q ss_pred cEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcce
Q 012418 212 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 291 (464)
Q Consensus 212 P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD 291 (464)
++||||||+|.+... ....|..+++ .....+.+|++||.+..+++++.+ |+.
T Consensus 108 ~~viiiDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--r~~ 159 (323)
T 1sxj_B 108 HKIVILDEADSMTAG-------------AQQALRRTME-------------LYSNSTRFAFACNQSNKIIEPLQS--QCA 159 (323)
T ss_dssp CEEEEEESGGGSCHH-------------HHHTTHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred ceEEEEECcccCCHH-------------HHHHHHHHHh-------------ccCCCceEEEEeCChhhchhHHHh--hce
Confidence 899999999976431 1122444444 233557889999999999999987 555
Q ss_pred EEEeC--CCHHHHHHHHHhhcCCCC--CChh---HHHHHhcCCChhhHHHH
Q 012418 292 KFYWA--PTREDRIGVCSGIFRTDN--VPKE---DIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 292 ~~i~i--P~~eeR~eIl~~~~~~~~--v~~~---~la~lt~gfsgadLd~~ 335 (464)
.+.+ |+.+++.+++..++...+ ++.+ .|++.+.|-....+..+
T Consensus 160 -~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 160 -ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp -EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4554 899999999877654333 3444 56677777666655544
No 53
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.43 E-value=9.1e-13 Score=145.47 Aligned_cols=127 Identities=15% Similarity=0.173 Sum_probs=93.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh----------CCC-------------CCCCChHHHHHHHHHHHHHHHHhCCcEE
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GIN-------------GNAGEPAKLIRQRYREAADIIKKGKMCC 214 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el----------g~~-------------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~I 214 (464)
.+..+||+||||||||++|+++|..+ +.. .+.|+.+..++.+|..+ +...++|
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~----~~~~~~i 281 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNSI 281 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHH----SSSSCEE
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHH----HhcCCeE
Confidence 56789999999999999999999987 211 46778888888888877 6667899
Q ss_pred EEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccCCc
Q 012418 215 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGR 289 (464)
Q Consensus 215 LfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRpGR 289 (464)
|||||+|.+.+..... . ........|..++ ....+.+|++||.++ .+|++|.| |
T Consensus 282 L~IDEi~~l~~~~~~~-~---~~~~~~~~L~~~l---------------~~~~~~~I~at~~~~~~~~~~~d~aL~~--R 340 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAAS-G---GQVDAANLIKPLL---------------SSGKIRVIGSTTYQEFSNIFEKDRALAR--R 340 (758)
T ss_dssp EEETTTTTTTTSCCSS-S---CHHHHHHHHSSCS---------------SSCCCEEEEEECHHHHHCCCCCTTSSGG--G
T ss_pred EEEechHHHhhcCCCC-c---chHHHHHHHHHHH---------------hCCCeEEEEEeCchHHhhhhhcCHHHHh--C
Confidence 9999999998764411 1 1122233332222 235678999998643 67899998 8
Q ss_pred ceEEEeC--CCHHHHHHHHHhhc
Q 012418 290 MEKFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 290 fD~~i~i--P~~eeR~eIl~~~~ 310 (464)
|+. +.+ |+.++|.+|++.+.
T Consensus 341 f~~-i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 341 FQK-IDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHH
T ss_pred ceE-EEcCCCCHHHHHHHHHHHH
Confidence 985 554 99999999987654
No 54
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=9.8e-13 Score=130.18 Aligned_cols=144 Identities=13% Similarity=0.148 Sum_probs=92.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCC------C---CCCC--ChHHHHHHHHHHHHHH------------HHhCCcEEEEec
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGI------N---GNAG--EPAKLIRQRYREAADI------------IKKGKMCCLFIN 218 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~------~---~~~G--e~~k~Ir~~F~~A~~~------------~~~~~P~ILfID 218 (464)
+|||||||||||++|+++|++++. . .... .....+++.+...... .....+.|||||
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiD 140 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILD 140 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEET
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEE
Confidence 999999999999999999999742 1 1111 2334444443332110 012356799999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-- 296 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i-- 296 (464)
|+|.+... ....|+.+++ .....+.+|++||.+..+++++++ |+.. +.+
T Consensus 141 E~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--R~~~-i~~~~ 191 (353)
T 1sxj_D 141 EADSMTAD-------------AQSALRRTME-------------TYSGVTRFCLICNYVTRIIDPLAS--QCSK-FRFKA 191 (353)
T ss_dssp TGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--HSEE-EECCC
T ss_pred CCCccCHH-------------HHHHHHHHHH-------------hcCCCceEEEEeCchhhCcchhhc--cCce-EEeCC
Confidence 99977432 1233555555 223456788899999999999998 6764 444
Q ss_pred CCHHHHHHHHHhhcCCCC--CChh---HHHHHhcCCChhhHHH
Q 012418 297 PTREDRIGVCSGIFRTDN--VPKE---DIVKLVDTFPGQSIDF 334 (464)
Q Consensus 297 P~~eeR~eIl~~~~~~~~--v~~~---~la~lt~gfsgadLd~ 334 (464)
|+.++..+++..++...+ ++.+ .|++.+.|.....+..
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 192 LDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 888999888887765544 4544 5566666655544443
No 55
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.40 E-value=6.9e-13 Score=134.42 Aligned_cols=129 Identities=17% Similarity=0.267 Sum_probs=70.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC------------CCCCCh-HHHHHHHHHHHHHHHHhCCcEEEEecccccc
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------GNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAG 223 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~Ge~-~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal 223 (464)
+.+..+|||||||||||++|+++|++++.+ .+.|+. ...+...+..+...+....++||||||+|.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 456789999999999999999999999876 233442 3344455544322223457899999999999
Q ss_pred ccCCCCC-CccchhhHHHHHHHHhhhcCCCc-c-cCCCccc------cCCCCCceEEEEeCCCCCCchhhcc
Q 012418 224 AGRMGGT-TQYTVNNQMVNATLMNIADNPTN-V-QLPGMYN------QEENPRVPIIVTGNDFSTLYAPLIR 286 (464)
Q Consensus 224 ~~~r~~~-~~~~~~~~~v~~~L~~llD~~~~-v-~ldG~~~------~~~~~~V~VIaTTN~~~~LDpALlR 286 (464)
...+.+. .........+...|+.+++.... + ...+... -....++.+|+||| .+.|++++.|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~ 220 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK 220 (376)
T ss_dssp --------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEEC-CTTHHHHTTT
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH
Confidence 7664311 11122223366677788773311 0 0111100 01235678888888 4555555554
No 56
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.39 E-value=1.5e-12 Score=135.96 Aligned_cols=157 Identities=17% Similarity=0.248 Sum_probs=91.9
Q ss_pred cccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-----CCC-CCCCChHH
Q 012418 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GIN-GNAGEPAK 194 (464)
Q Consensus 121 r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~el-----g~~-~~~Ge~~k 194 (464)
..|+|++++.+. .. ......++.+...++. +..++||||||||||+||++|++++ +.+ .++. ...
T Consensus 100 ~~~tfd~fv~g~--~n----~~a~~~~~~~a~~~~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~~~ 170 (440)
T 2z4s_A 100 PDYTFENFVVGP--GN----SFAYHAALEVAKHPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SEK 170 (440)
T ss_dssp TTCSGGGCCCCT--TT----HHHHHHHHHHHHSTTS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-HHH
T ss_pred CCCChhhcCCCC--ch----HHHHHHHHHHHhCCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHH
Confidence 356788877321 01 2234445555555553 6789999999999999999999998 544 1111 111
Q ss_pred HHHHHHHHH-----HHHHH-hC-CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCC
Q 012418 195 LIRQRYREA-----ADIIK-KG-KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 267 (464)
Q Consensus 195 ~Ir~~F~~A-----~~~~~-~~-~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~ 267 (464)
...++.... ..... .. .++||||||+|.+.+... ....|+.+++ . ....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~-----------~q~~l~~~l~---------~---l~~~~ 227 (440)
T 2z4s_A 171 FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTG-----------VQTELFHTFN---------E---LHDSG 227 (440)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHH-----------HHHHHHHHHH---------H---HHTTT
T ss_pred HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChH-----------HHHHHHHHHH---------H---HHHCC
Confidence 111111110 01111 23 789999999998865321 1122333332 0 01122
Q ss_pred ceEEEEeCC-CCC---CchhhccCCcce--EEEeC--CCHHHHHHHHHhhcC
Q 012418 268 VPIIVTGND-FST---LYAPLIRDGRME--KFYWA--PTREDRIGVCSGIFR 311 (464)
Q Consensus 268 V~VIaTTN~-~~~---LDpALlRpGRfD--~~i~i--P~~eeR~eIl~~~~~ 311 (464)
..||+||++ +.. ++++|++ ||. ..+.+ |+.++|.+|++....
T Consensus 228 ~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 228 KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp CEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 345666665 443 8899998 665 55554 999999999877664
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=7.3e-12 Score=124.55 Aligned_cols=155 Identities=14% Similarity=0.147 Sum_probs=94.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---------CCC------CCCCChHHH------------------HHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM---------GIN------GNAGEPAKL------------------IRQRYREA 203 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el---------g~~------~~~Ge~~k~------------------Ir~~F~~A 203 (464)
..+..++||||||||||++++++++++ +.. ......... ..+++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 556799999999999999999999998 433 111111111 11223332
Q ss_pred HHHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCC-CCCceEEEEeCCC---C
Q 012418 204 ADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDF---S 278 (464)
Q Consensus 204 ~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~-~~~V~VIaTTN~~---~ 278 (464)
.+.+. ..+|+||||||+|.+...+. .+ ..|..+++ .+.. .. ..++.+|+|||++ +
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~~~~~--------~~---~~l~~l~~-----~~~~----~~~~~~~~~I~~t~~~~~~~ 181 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLPKRPG--------GQ---DLLYRITR-----INQE----LGDRVWVSLVGITNSLGFVE 181 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHHHSTT--------HH---HHHHHHHH-----GGGC----C-----CEEEEECSCSTTSS
T ss_pred HHHHhccCCeEEEEEccHhhhcccCC--------CC---hHHHhHhh-----chhh----cCCCceEEEEEEECCCchHh
Confidence 22333 45699999999998865421 11 22333333 0000 11 4578999999998 7
Q ss_pred CCchhhccCCcceE-EEeC--CCHHHHHHHHHhhcC----CCCCChh---HHHHHhc---CCChhhHH
Q 012418 279 TLYAPLIRDGRMEK-FYWA--PTREDRIGVCSGIFR----TDNVPKE---DIVKLVD---TFPGQSID 333 (464)
Q Consensus 279 ~LDpALlRpGRfD~-~i~i--P~~eeR~eIl~~~~~----~~~v~~~---~la~lt~---gfsgadLd 333 (464)
.+++++++ ||.. .+.+ |+.+++.+|++..+. ...++.+ .+++.+. |.+...++
T Consensus 182 ~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 247 (387)
T 2v1u_A 182 NLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALD 247 (387)
T ss_dssp SSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHH
T ss_pred hhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHH
Confidence 89999988 6754 4555 789999999776543 2334433 5667777 55544444
No 58
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.2e-12 Score=132.04 Aligned_cols=126 Identities=9% Similarity=0.031 Sum_probs=84.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC-------C---C------CC---------------------CCChHHHHHH
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG-------I---N------GN---------------------AGEPAKLIRQ 198 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg-------~---~------~~---------------------~Ge~~k~Ir~ 198 (464)
-..|..++||||||||||+++++|++++. + . .. .|+....++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 35678999999999999999999999983 1 1 00 1233444555
Q ss_pred HHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC
Q 012418 199 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 278 (464)
Q Consensus 199 ~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~ 278 (464)
.|.... -....++||||||+|.+. . + ..|+++++ |......++.||+++|..+
T Consensus 122 ~f~~~~--~~~~~~~ii~lDE~d~l~---~---q---------~~L~~l~~----------~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 122 YITNVP--KAKKRKTLILIQNPENLL---S---E---------KILQYFEK----------WISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHSC--GGGSCEEEEEEECCSSSC---C---T---------HHHHHHHH----------HHHCSSCCEEEEEECCSSC
T ss_pred HHHHhh--hccCCceEEEEecHHHhh---c---c---------hHHHHHHh----------cccccCCcEEEEEEecCcc
Confidence 555320 025678999999999987 1 1 23444443 2224567889999999997
Q ss_pred CCchh----hccCCcce-EEEeC--CCHHHHHHHHHhhc
Q 012418 279 TLYAP----LIRDGRME-KFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 279 ~LDpA----LlRpGRfD-~~i~i--P~~eeR~eIl~~~~ 310 (464)
..+.. +.. ||. ..|.+ ++.++..+|++..+
T Consensus 175 ~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 175 TIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHH
Confidence 65433 343 675 34555 79999999976544
No 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.39 E-value=2.2e-12 Score=125.38 Aligned_cols=150 Identities=17% Similarity=0.228 Sum_probs=93.7
Q ss_pred HHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC------------CCCCChHHHHHHHHHHHHHHHH--h
Q 012418 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------GNAGEPAKLIRQRYREAADIIK--K 209 (464)
Q Consensus 144 ~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------------~~~Ge~~k~Ir~~F~~A~~~~~--~ 209 (464)
...+++++... +.|. +|||||||||||++|+++++++... ...| ...+++.......... .
T Consensus 26 ~~~l~~~l~~~--~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 100 (319)
T 2chq_A 26 IQRLKGYVERK--NIPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--IDVVRHKIKEFARTAPIGG 100 (319)
T ss_dssp HHHHHTTTTTT--CCCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--TTTSSHHHHHHHHSCCSSS
T ss_pred HHHHHHHHhCC--CCCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--hHHHHHHHHHHHhcCCCCC
Confidence 33444444432 3334 9999999999999999999997221 1112 1122233332211111 2
Q ss_pred CCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCc
Q 012418 210 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 289 (464)
Q Consensus 210 ~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGR 289 (464)
..+.||||||+|.+... ....|..+++ .....+.+|++||.+..+++++.+ |
T Consensus 101 ~~~~vliiDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r 152 (319)
T 2chq_A 101 APFKIIFLDEADALTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--R 152 (319)
T ss_dssp CCCEEEEEETGGGSCHH-------------HHHTTGGGTS-------------SSSSSEEEEEEESCGGGSCHHHHT--T
T ss_pred CCceEEEEeCCCcCCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcchHHHh--h
Confidence 56899999999987431 1122434443 334567899999999999999998 5
Q ss_pred ceEEEeC--CCHHHHHHHHHhhcCCCCC--ChhHHHHHhcCC
Q 012418 290 MEKFYWA--PTREDRIGVCSGIFRTDNV--PKEDIVKLVDTF 327 (464)
Q Consensus 290 fD~~i~i--P~~eeR~eIl~~~~~~~~v--~~~~la~lt~gf 327 (464)
+. .+.+ |+.+++.+++..++...++ +.+.+..+....
T Consensus 153 ~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~ 193 (319)
T 2chq_A 153 CA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS 193 (319)
T ss_dssp CE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTT
T ss_pred Ce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 65 4554 8899999998877765544 555554444333
No 60
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=2.5e-12 Score=125.51 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=91.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC--------CCCCCh--HHHHHHHHHHHHHHH--HhCCcEEEEeccccccccCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN--------GNAGEP--AKLIRQRYREAADII--KKGKMCCLFINDLDAGAGRMG 228 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~--------~~~Ge~--~k~Ir~~F~~A~~~~--~~~~P~ILfIDEIDal~~~r~ 228 (464)
.+|||||||||||++|+++|+++... ....+. ...+++......... ....+.||||||+|.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-- 125 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-- 125 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH--
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH--
Confidence 39999999999999999999997432 111121 122233322221100 1256899999999976321
Q ss_pred CCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHH
Q 012418 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 306 (464)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl 306 (464)
....|..+++ .....+.+|+|||.+..+++++.+ |+.. +.+ |+.++..+++
T Consensus 126 -----------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~~-~~~~~l~~~~~~~~l 178 (327)
T 1iqp_A 126 -----------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAI-FRFRPLRDEDIAKRL 178 (327)
T ss_dssp -----------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--TEEE-EECCCCCHHHHHHHH
T ss_pred -----------HHHHHHHHHH-------------hcCCCCeEEEEeCCccccCHHHHh--hCcE-EEecCCCHHHHHHHH
Confidence 1233445554 233457899999999999999987 6663 454 7889999988
Q ss_pred HhhcCCCC--CChh---HHHHHhcCCChhhHHH
Q 012418 307 SGIFRTDN--VPKE---DIVKLVDTFPGQSIDF 334 (464)
Q Consensus 307 ~~~~~~~~--v~~~---~la~lt~gfsgadLd~ 334 (464)
..+....+ ++.+ .|++.+.|-....+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 179 RYIAENEGLELTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp HHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHH
Confidence 87766555 3443 4555565554444433
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.36 E-value=2.1e-11 Score=122.00 Aligned_cols=145 Identities=14% Similarity=0.241 Sum_probs=93.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh-----------CCC-------CCCCChHHHHHH-------------------H
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM-----------GIN-------GNAGEPAKLIRQ-------------------R 199 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el-----------g~~-------~~~Ge~~k~Ir~-------------------~ 199 (464)
..|..++|+||||||||++|+++++++ +.. ...+.....+.. +
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 456799999999999999999999987 554 111122222222 2
Q ss_pred HHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC--
Q 012418 200 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-- 277 (464)
Q Consensus 200 F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~-- 277 (464)
+....+.++...+ ||||||+|.+..... + .. ++..++. . . .++.||+|||.+
T Consensus 123 ~~~l~~~l~~~~~-vlilDEi~~l~~~~~---~-----~~---~l~~l~~---------~----~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 123 IDKIKNGTRNIRA-IIYLDEVDTLVKRRG---G-----DI---VLYQLLR---------S----D-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHSSSCE-EEEEETTHHHHHSTT---S-----HH---HHHHHHT---------S----S-SCEEEEEECSSTTT
T ss_pred HHHHHHHhccCCC-EEEEECHHHhccCCC---C-----ce---eHHHHhc---------C----C-cceEEEEEECCCch
Confidence 2222222333444 999999999865421 1 11 1333333 1 1 678999999998
Q ss_pred -CCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcC----CCCCChh---HHHHHhcCCCh
Q 012418 278 -STLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR----TDNVPKE---DIVKLVDTFPG 329 (464)
Q Consensus 278 -~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~----~~~v~~~---~la~lt~gfsg 329 (464)
+.+++++++ ||...+.+ |+.+++.+|++..+. ...++.+ .+++.+.+.+|
T Consensus 177 ~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G 236 (384)
T 2qby_B 177 RDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHG 236 (384)
T ss_dssp TTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCC
T ss_pred HhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccC
Confidence 789999987 66556665 799999999876543 2344443 56677774444
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.33 E-value=2.5e-12 Score=127.28 Aligned_cols=134 Identities=17% Similarity=0.229 Sum_probs=81.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC-------CC-----------------------------CCCChHHHH------H
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGI-------NG-----------------------------NAGEPAKLI------R 197 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~-------~~-----------------------------~~Ge~~k~I------r 197 (464)
.++|||||||||||++|+++|+.++. +- ..+.....+ +
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 35999999999999999999999863 10 022222211 1
Q ss_pred HHHHHHH-----HHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCC-cccCCCccccCCCCCceEE
Q 012418 198 QRYREAA-----DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPII 271 (464)
Q Consensus 198 ~~F~~A~-----~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~-~v~ldG~~~~~~~~~V~VI 271 (464)
..+..+. ..+....+++|||||||.+... ....|+.+++... .+...|.. .....++.+|
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~-~~~~~~~~li 191 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLS-IRHPARFVLV 191 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCC-EEEECCEEEE
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceE-EeeCCceEEE
Confidence 1121110 0111234789999999976332 2234445554211 11222221 0112378899
Q ss_pred EEeCCCC-CCchhhccCCcceEEEeC--C-CHHHHHHHHHhh
Q 012418 272 VTGNDFS-TLYAPLIRDGRMEKFYWA--P-TREDRIGVCSGI 309 (464)
Q Consensus 272 aTTN~~~-~LDpALlRpGRfD~~i~i--P-~~eeR~eIl~~~ 309 (464)
+|||..+ .|+++|++ ||+..+.+ | +.++|.+|++..
T Consensus 192 ~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 192 GSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp EEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHH
T ss_pred EEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHH
Confidence 9999755 89999998 89887776 5 678888888664
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.33 E-value=6.6e-12 Score=138.91 Aligned_cols=128 Identities=12% Similarity=0.161 Sum_probs=84.3
Q ss_pred CCc-EEEEEcCCCccHHHHHHHHHHHh---CCC-----------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccc
Q 012418 158 VPL-ILGIWGGKGQGKSFQCELVFAKM---GIN-----------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 158 ~p~-GLLL~GPPGtGKT~LAkaIA~el---g~~-----------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa 222 (464)
.|. .+||+||||||||++|+++|+.+ +.+ .+... .. .++... +...++||||||||.
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~-~~---~l~~~~----~~~~~~vl~lDEi~~ 590 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS-GG---QLTEKV----RRKPYSVVLLDAIEK 590 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHH----HHCSSSEEEEECGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc-cc---hhhHHH----HhCCCeEEEEeCccc
Confidence 344 69999999999999999999997 222 22222 11 122222 456678999999986
Q ss_pred cccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCC------------CchhhccCCcc
Q 012418 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST------------LYAPLIRDGRM 290 (464)
Q Consensus 223 l~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~------------LDpALlRpGRf 290 (464)
+. ..+...|++++++-......|. .....++.||+|||.+.. +.|+|+. ||
T Consensus 591 ~~-------------~~~~~~Ll~~le~g~~~~~~g~--~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl 653 (758)
T 3pxi_A 591 AH-------------PDVFNILLQVLEDGRLTDSKGR--TVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RI 653 (758)
T ss_dssp SC-------------HHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TS
T ss_pred cC-------------HHHHHHHHHHhccCeEEcCCCC--EeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hC
Confidence 52 2345567777774322222222 123467899999997665 7888886 99
Q ss_pred eEEEeC--CCHHHHHHHHHhhc
Q 012418 291 EKFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 291 D~~i~i--P~~eeR~eIl~~~~ 310 (464)
|..+.+ |+.+++.+|++.++
T Consensus 654 ~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 654 DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SEEEECC--CHHHHHHHHHHHH
T ss_pred CeEEecCCCCHHHHHHHHHHHH
Confidence 888886 78899999876554
No 64
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.33 E-value=8.4e-13 Score=122.63 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=87.2
Q ss_pred HHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----CC--CCChHHHHHHHHHHHHHHHHhCCcEEEE
Q 012418 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----GN--AGEPAKLIRQRYREAADIIKKGKMCCLF 216 (464)
Q Consensus 143 ~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----~~--~Ge~~k~Ir~~F~~A~~~~~~~~P~ILf 216 (464)
....++.+.... .+..++|+||||||||++|+++++++... .+ ..+....+.+.+. ....+.+||
T Consensus 39 ~~~~l~~~~~~~---~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~vli 109 (242)
T 3bos_A 39 LIGALKSAASGD---GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLE------GLEQFDLIC 109 (242)
T ss_dssp HHHHHHHHHHTC---SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGT------TGGGSSEEE
T ss_pred HHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHH------hccCCCEEE
Confidence 344455555432 46799999999999999999999998632 01 1111011111111 134578999
Q ss_pred eccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC----CCchhhccCCcce-
Q 012418 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS----TLYAPLIRDGRME- 291 (464)
Q Consensus 217 IDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~----~LDpALlRpGRfD- 291 (464)
|||+|.+..... ....|+.+++ .. .....+.+|+|||... .+++++.+ ||.
T Consensus 110 iDe~~~~~~~~~-----------~~~~l~~~l~---------~~--~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~ 165 (242)
T 3bos_A 110 IDDVDAVAGHPL-----------WEEAIFDLYN---------RV--AEQKRGSLIVSASASPMEAGFVLPDLVS--RMHW 165 (242)
T ss_dssp EETGGGGTTCHH-----------HHHHHHHHHH---------HH--HHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHH
T ss_pred EeccccccCCHH-----------HHHHHHHHHH---------HH--HHcCCCeEEEEcCCCHHHHHHhhhhhhh--Hhhc
Confidence 999998754311 1122333333 00 0112233666666433 46688887 564
Q ss_pred -EEEeC--CCHHHHHHHHHhhcCCC--CCChhHHHHHhcC
Q 012418 292 -KFYWA--PTREDRIGVCSGIFRTD--NVPKEDIVKLVDT 326 (464)
Q Consensus 292 -~~i~i--P~~eeR~eIl~~~~~~~--~v~~~~la~lt~g 326 (464)
..+.+ |+.+++.+++..++... .++.+.+..+...
T Consensus 166 ~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 205 (242)
T 3bos_A 166 GLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNR 205 (242)
T ss_dssp SEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66775 89999999988776533 3455544444433
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.32 E-value=4.1e-12 Score=140.22 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=88.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC----------------CCCCChHHHH-----HHHHHHHHHHHHhCCcEEEEec
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN----------------GNAGEPAKLI-----RQRYREAADIIKKGKMCCLFIN 218 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~----------------~~~Ge~~k~I-----r~~F~~A~~~~~~~~P~ILfID 218 (464)
..+||+||||||||++|+++|+.++.+ ..+|.+...+ ..+.. .++...++|||||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~----~~~~~~~~vl~lD 564 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTD----AVIKHPHAVLLLD 564 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHH----HHHHCSSEEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHH----HHHhCCCcEEEEe
Confidence 469999999999999999999999754 2233221111 11222 2255668999999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC--------------------
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------------------- 278 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-------------------- 278 (464)
|||++. ..+...|++++++.....-.|. .....++.||+|||...
T Consensus 565 Ei~~~~-------------~~~~~~Ll~~le~~~~~~~~g~--~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~ 629 (758)
T 1r6b_X 565 EIEKAH-------------PDVFNILLQVMDNGTLTDNNGR--KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAM 629 (758)
T ss_dssp TGGGSC-------------HHHHHHHHHHHHHSEEEETTTE--EEECTTEEEEEEECSSCC-----------------CH
T ss_pred CccccC-------------HHHHHHHHHHhcCcEEEcCCCC--EEecCCeEEEEecCcchhhhhhcccCccccchHHHHH
Confidence 999752 2245566677763222111121 11236788999999854
Q ss_pred -----CCchhhccCCcceEEEeC--CCHHHHHHHHHhhcC
Q 012418 279 -----TLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311 (464)
Q Consensus 279 -----~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~ 311 (464)
.++|+|+. |||..+.+ |+.+++.+|+..++.
T Consensus 630 ~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 630 EEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp HHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 67899986 99988887 789999999876653
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.32 E-value=8.6e-12 Score=124.30 Aligned_cols=148 Identities=11% Similarity=0.163 Sum_probs=96.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCCCC-----CC------------------------ChHHHHHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINGN-----AG------------------------EPAKLIRQRYREAADII 207 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~-----~G------------------------e~~k~Ir~~F~~A~~~~ 207 (464)
+.|..+||+||||||||++|+++|++++.... .+ .....+++++..+....
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhcc
Confidence 45678999999999999999999999865310 00 11123455555441111
Q ss_pred HhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccC
Q 012418 208 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 287 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRp 287 (464)
....+.||||||+|.+... .. ..|+.+++ .....+.+|++||++..+++++++
T Consensus 116 ~~~~~~vliiDe~~~l~~~------------~~-~~Ll~~le-------------~~~~~~~~Il~~~~~~~l~~~l~s- 168 (373)
T 1jr3_A 116 ARGRFKVYLIDEVHMLSRH------------SF-NALLKTLE-------------EPPEHVKFLLATTDPQKLPVTILS- 168 (373)
T ss_dssp SSSSSEEEEEECGGGSCHH------------HH-HHHHHHHH-------------SCCSSEEEEEEESCGGGSCHHHHT-
T ss_pred ccCCeEEEEEECcchhcHH------------HH-HHHHHHHh-------------cCCCceEEEEEeCChHhCcHHHHh-
Confidence 1356799999999976321 12 23444454 234567899999999999999987
Q ss_pred CcceEEEeC--CCHHHHHHHHHhhcCCCCC--Chh---HHHHHhcCCChhhHH
Q 012418 288 GRMEKFYWA--PTREDRIGVCSGIFRTDNV--PKE---DIVKLVDTFPGQSID 333 (464)
Q Consensus 288 GRfD~~i~i--P~~eeR~eIl~~~~~~~~v--~~~---~la~lt~gfsgadLd 333 (464)
|+. .+.+ |+.++..+++..++...++ +.+ .|++.+.|.....+.
T Consensus 169 -r~~-~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~ 219 (373)
T 1jr3_A 169 -RCL-QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 219 (373)
T ss_dssp -TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHH
T ss_pred -hee-EeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHH
Confidence 553 4554 8999999998877654443 333 566666665554443
No 67
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=1.4e-11 Score=130.98 Aligned_cols=140 Identities=15% Similarity=0.214 Sum_probs=82.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCCChHHHHHHHHH-------------HHHHHH-HhCCcEEEE
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAGEPAKLIRQRYR-------------EAADII-KKGKMCCLF 216 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~Ge~~k~Ir~~F~-------------~A~~~~-~~~~P~ILf 216 (464)
.+++++||+||||||||++|+++|++++.+ .... ....+...+. .+.+.. ...+++|||
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 153 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR-SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVII 153 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC-CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc-hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEE
Confidence 367899999999999999999999999876 1111 1112222111 110000 136789999
Q ss_pred eccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC--CCchhhccCCcceEEE
Q 012418 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFY 294 (464)
Q Consensus 217 IDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~--~LDpALlRpGRfD~~i 294 (464)
|||+|.+..... .. ...|.++++ . .+++||++||+.. .| +++.| |+ ..+
T Consensus 154 IDEid~l~~~~~---------~~-l~~L~~~l~-------------~--~~~~iIli~~~~~~~~l-~~l~~--r~-~~i 204 (516)
T 1sxj_A 154 MDEVDGMSGGDR---------GG-VGQLAQFCR-------------K--TSTPLILICNERNLPKM-RPFDR--VC-LDI 204 (516)
T ss_dssp ECSGGGCCTTST---------TH-HHHHHHHHH-------------H--CSSCEEEEESCTTSSTT-GGGTT--TS-EEE
T ss_pred EECCCccchhhH---------HH-HHHHHHHHH-------------h--cCCCEEEEEcCCCCccc-hhhHh--ce-EEE
Confidence 999999865421 01 223444444 1 2456777777654 33 34554 33 345
Q ss_pred eC--CCHHHHHHHHHhhcCCC--CCChh---HHHHHhcC
Q 012418 295 WA--PTREDRIGVCSGIFRTD--NVPKE---DIVKLVDT 326 (464)
Q Consensus 295 ~i--P~~eeR~eIl~~~~~~~--~v~~~---~la~lt~g 326 (464)
.+ |+.+++.+++..+.... .++.+ .|++.+.|
T Consensus 205 ~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 205 QFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 54 99999999887665432 34444 44444444
No 68
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=6.4e-11 Score=117.41 Aligned_cols=152 Identities=16% Similarity=0.234 Sum_probs=94.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh------CCC--------------------C-------CCCChHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM------GIN--------------------G-------NAGEPAKLIRQRYREA 203 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el------g~~--------------------~-------~~Ge~~k~Ir~~F~~A 203 (464)
..+..++|+||||||||+|++++++++ +.. . ..|... .+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~l 119 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSI---AELYRRL 119 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCH---HHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCH---HHHHHHH
Confidence 556789999999999999999999987 554 0 111111 2223333
Q ss_pred HHHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC---CC
Q 012418 204 ADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF---ST 279 (464)
Q Consensus 204 ~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~---~~ 279 (464)
.+.+. ...|+||||||+|.+..... . ..+ ..|+++++ . ....++.+|+|||++ ..
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~~---~-----~~l-~~l~~~~~---------~---~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKYN---D-----DIL-YKLSRINS---------E---VNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSSC---S-----THH-HHHHHHHH---------S---CCC--EEEEEEESCGGGGGG
T ss_pred HHHHhccCCeEEEEEcChhhhhccCc---C-----HHH-HHHhhchh---------h---cCCCeEEEEEEECCCChHhh
Confidence 33334 34599999999999875432 1 112 22333333 0 134578899999988 46
Q ss_pred CchhhccCCcce-EEEeC--CCHHHHHHHHHhhcC----CCCCChh---HHHHHhc---CCChhhHHH
Q 012418 280 LYAPLIRDGRME-KFYWA--PTREDRIGVCSGIFR----TDNVPKE---DIVKLVD---TFPGQSIDF 334 (464)
Q Consensus 280 LDpALlRpGRfD-~~i~i--P~~eeR~eIl~~~~~----~~~v~~~---~la~lt~---gfsgadLd~ 334 (464)
+++.+.+ ||. +.+.+ ++.+++.+|+...+. ...++.+ .+++.+. |.+...++.
T Consensus 179 ~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~l 244 (386)
T 2qby_A 179 LDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDL 244 (386)
T ss_dssp CTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7888887 453 34554 789999999876432 2345544 5566666 666555543
No 69
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.29 E-value=1.1e-11 Score=124.39 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=100.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCCC---------------------------C-----CCChHHHHHHHHHHH
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGING---------------------------N-----AGEPAKLIRQRYREA 203 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~---------------------------~-----~Ge~~k~Ir~~F~~A 203 (464)
-+.|.++|||||||+|||++|+++|+++.... . .......+|++.+.+
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~ 100 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKL 100 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHT
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHH
Confidence 36788999999999999999999999986431 0 112345567766655
Q ss_pred HHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchh
Q 012418 204 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 283 (464)
Q Consensus 204 ~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpA 283 (464)
......+.+.|++|||+|.+... ..+. |+..++ +...++.+|++||+++.|+|+
T Consensus 101 ~~~~~~~~~kvviIdead~l~~~------------a~na-LLk~lE-------------ep~~~~~~Il~t~~~~~l~~t 154 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLTDA------------AANA-LLKTLE-------------EPPAETWFFLATREPERLLAT 154 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBCHH------------HHHH-HHHHHT-------------SCCTTEEEEEEESCGGGSCHH
T ss_pred hhccccCCcEEEEECchhhcCHH------------HHHH-HHHHhc-------------CCCCCeEEEEEeCChHhCcHH
Confidence 11111356799999999976321 1233 444454 344567899999999999999
Q ss_pred hccCCcceEEEeC--CCHHHHHHHHHhhcCCCCCChh---HHHHHhcCCChhhHH
Q 012418 284 LIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKE---DIVKLVDTFPGQSID 333 (464)
Q Consensus 284 LlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v~~~---~la~lt~gfsgadLd 333 (464)
+++ |+.. +.+ |+.++..+++.... .++.+ .+++++.|-.+..+.
T Consensus 155 i~S--Rc~~-~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 155 LRS--RCRL-HYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp HHT--TSEE-EECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred Hhh--ccee-eeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 998 5544 554 89999999887765 34444 566777776665554
No 70
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=3.1e-11 Score=120.07 Aligned_cols=166 Identities=16% Similarity=0.301 Sum_probs=98.2
Q ss_pred ccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----------------
Q 012418 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 186 (464)
Q Consensus 124 ~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------------- 186 (464)
+|+++++. ..+...+++++.. .-+.|. +||+||||||||++++++|+++..+
T Consensus 12 ~~~~~vg~---------~~~~~~l~~~~~~-~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~ 80 (354)
T 1sxj_E 12 SLNALSHN---------EELTNFLKSLSDQ-PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN 80 (354)
T ss_dssp SGGGCCSC---------HHHHHHHHTTTTC-TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------
T ss_pred CHHHhcCC---------HHHHHHHHHHHhh-CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc
Confidence 34666664 2344455555521 224455 9999999999999999999975321
Q ss_pred ------------------CCCCC-hHHHHHHHHHHHHHHHH----------hCCcEEEEeccccccccCCCCCCccchhh
Q 012418 187 ------------------GNAGE-PAKLIRQRYREAADIIK----------KGKMCCLFINDLDAGAGRMGGTTQYTVNN 237 (464)
Q Consensus 187 ------------------~~~Ge-~~k~Ir~~F~~A~~~~~----------~~~P~ILfIDEIDal~~~r~~~~~~~~~~ 237 (464)
...+. ....+++....+..... ...|.||||||+|.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~----------- 149 (354)
T 1sxj_E 81 RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD----------- 149 (354)
T ss_dssp -----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH-----------
T ss_pred ccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH-----------
Confidence 00010 01124444443311100 236889999999874211
Q ss_pred HHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCCC
Q 012418 238 QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV 315 (464)
Q Consensus 238 ~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~v 315 (464)
....|+.++. ....++.+|++||+++.+++++++ |+ ..+.+ |+.+++.++++.+....++
T Consensus 150 --~~~~L~~~le-------------~~~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 150 --AQAALRRTME-------------KYSKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp --HHHHHHHHHH-------------HSTTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHH-------------hhcCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 1223444444 223457899999999999999987 66 34554 8999999998877654433
Q ss_pred --C-hh---HHHHHhcCCCh
Q 012418 316 --P-KE---DIVKLVDTFPG 329 (464)
Q Consensus 316 --~-~~---~la~lt~gfsg 329 (464)
+ .+ .|++.+.|-..
T Consensus 212 ~~~~~~~l~~i~~~~~G~~r 231 (354)
T 1sxj_E 212 QLETKDILKRIAQASNGNLR 231 (354)
T ss_dssp EECCSHHHHHHHHHHTTCHH
T ss_pred CCCcHHHHHHHHHHcCCCHH
Confidence 3 33 44555544433
No 71
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.28 E-value=3.8e-11 Score=120.46 Aligned_cols=156 Identities=14% Similarity=0.073 Sum_probs=94.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 231 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~ 231 (464)
.++..++||||||||||+|+++||++++.+ ..+......+...+. ....++|+||||++.+...
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~------~~~~~~v~~iDE~~~l~~~----- 117 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT------SLERGDVLFIDEIHRLNKA----- 117 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH------HCCTTCEEEEETGGGCCHH-----
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH------HccCCCEEEEcchhhcCHH-----
Confidence 345679999999999999999999999876 122222333333322 1245789999999976431
Q ss_pred ccchhhHHHHHHHHhhhcCCCcccC--CCc---cccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeC--CCHHHHHH
Q 012418 232 QYTVNNQMVNATLMNIADNPTNVQL--PGM---YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 304 (464)
Q Consensus 232 ~~~~~~~~v~~~L~~llD~~~~v~l--dG~---~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~i--P~~eeR~e 304 (464)
+...|+..+......-+ .+. ........+.+|.+||++..|++++++ ||...+.+ |+.+++.+
T Consensus 118 --------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~ 187 (334)
T 1in4_A 118 --------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKE 187 (334)
T ss_dssp --------HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHH
T ss_pred --------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHH
Confidence 12223333321100000 000 001123457788899999999999998 88766665 89999999
Q ss_pred HHHhhcCCC--CCChh---HHHHHhcCCChhhHH
Q 012418 305 VCSGIFRTD--NVPKE---DIVKLVDTFPGQSID 333 (464)
Q Consensus 305 Il~~~~~~~--~v~~~---~la~lt~gfsgadLd 333 (464)
|++...... .++.+ .|++.+.|.+...+.
T Consensus 188 iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 188 IIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHH
Confidence 987665432 34444 445555555443333
No 72
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=6.4e-13 Score=144.09 Aligned_cols=136 Identities=17% Similarity=0.213 Sum_probs=82.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC--------CCCCChHHHHHHHHHHH----HHHHHhCCcEEEEeccccccccCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN--------GNAGEPAKLIRQRYREA----ADIIKKGKMCCLFINDLDAGAGRM 227 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~--------~~~Ge~~k~Ir~~F~~A----~~~~~~~~P~ILfIDEIDal~~~r 227 (464)
..|||+||||||||+||+++|+.++.. ...|-.+..++..+..+ ...+.....+||||||||++...
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~- 406 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE- 406 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH-
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh-
Confidence 379999999999999999999987633 00111111111111100 00011224589999999976322
Q ss_pred CCCCccchhhHHHHHHHHhhhcCCCcc-cCCCccccCCCCCceEEEEeCCCC-------------CCchhhccCCcceEE
Q 012418 228 GGTTQYTVNNQMVNATLMNIADNPTNV-QLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRDGRMEKF 293 (464)
Q Consensus 228 ~~~~~~~~~~~~v~~~L~~llD~~~~v-~ldG~~~~~~~~~V~VIaTTN~~~-------------~LDpALlRpGRfD~~ 293 (464)
+...|++++++.... .-.|. ......++.||+|||... .|++||++ |||..
T Consensus 407 ------------~q~~Ll~~le~~~i~i~~~g~-~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~ 471 (595)
T 3f9v_A 407 ------------DRVAIHEAMEQQTVSIAKAGI-VAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLI 471 (595)
T ss_dssp ------------HHHHHHHHHHSSSEEEESSSS-EEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCC
T ss_pred ------------HhhhhHHHHhCCEEEEecCCc-EEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEE
Confidence 234466666633221 01122 112246788999999987 89999998 99975
Q ss_pred EeC---CCHHHHHHHHHhhcCC
Q 012418 294 YWA---PTREDRIGVCSGIFRT 312 (464)
Q Consensus 294 i~i---P~~eeR~eIl~~~~~~ 312 (464)
+.+ |+.+ ..+|.+.++..
T Consensus 472 ~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 472 FILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEECCTTHHH-HHHHHHHHHTT
T ss_pred EEeCCCCCHH-HHHHHHHHHHH
Confidence 553 7777 77777766654
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=5.8e-11 Score=118.67 Aligned_cols=141 Identities=15% Similarity=0.215 Sum_probs=88.0
Q ss_pred HHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC--------CCC--CChHHHHHHHHHHHHHHHH--hC
Q 012418 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------GNA--GEPAKLIRQRYREAADIIK--KG 210 (464)
Q Consensus 143 ~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--------~~~--Ge~~k~Ir~~F~~A~~~~~--~~ 210 (464)
++..+++.+... +.|. +|||||||||||++|+++|+++... ... ......+++......+... ..
T Consensus 33 ~~~~L~~~i~~g--~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~ 109 (340)
T 1sxj_C 33 VITTVRKFVDEG--KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSK 109 (340)
T ss_dssp HHHHHHHHHHTT--CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSC
T ss_pred HHHHHHHHHhcC--CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCC
Confidence 334444554432 3444 9999999999999999999997432 000 0123445554443311000 13
Q ss_pred CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcc
Q 012418 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 290 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRf 290 (464)
.+.|++|||+|.+... ....|..+++ .....+.+|++||.+..+.+++++ |+
T Consensus 110 ~~~viiiDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~n~~~~i~~~i~s--R~ 161 (340)
T 1sxj_C 110 GFKLIILDEADAMTNA-------------AQNALRRVIE-------------RYTKNTRFCVLANYAHKLTPALLS--QC 161 (340)
T ss_dssp SCEEEEETTGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TS
T ss_pred CceEEEEeCCCCCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEecCccccchhHHh--hc
Confidence 4789999999976321 1223444454 223456788899999999999998 66
Q ss_pred eEEEeC--CCHHHHHHHHHhhcCCCCC
Q 012418 291 EKFYWA--PTREDRIGVCSGIFRTDNV 315 (464)
Q Consensus 291 D~~i~i--P~~eeR~eIl~~~~~~~~v 315 (464)
.. +.+ ++.++..+++..++...++
T Consensus 162 ~~-~~~~~l~~~~~~~~l~~~~~~~~~ 187 (340)
T 1sxj_C 162 TR-FRFQPLPQEAIERRIANVLVHEKL 187 (340)
T ss_dssp EE-EECCCCCHHHHHHHHHHHHHTTTC
T ss_pred ee-EeccCCCHHHHHHHHHHHHHHcCC
Confidence 64 444 6788888887777644443
No 74
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.22 E-value=8e-12 Score=153.74 Aligned_cols=137 Identities=14% Similarity=0.160 Sum_probs=88.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh-CCC-----CCCCChHHHHHHHHHHHHHHHH-----------hCCcEEEEeccc
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM-GIN-----GNAGEPAKLIRQRYREAADIIK-----------KGKMCCLFINDL 220 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el-g~~-----~~~Ge~~k~Ir~~F~~A~~~~~-----------~~~P~ILfIDEI 220 (464)
..+++||+||||||||++|+.+...+ +.. -........+...+....+..+ .++++|||||||
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEi 1345 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEI 1345 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEeccc
Confidence 45799999999999999996555543 322 2222333444444443211100 245689999999
Q ss_pred cccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCC-----CCCceEEEEeCCCC-----CCchhhccCCcc
Q 012418 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-----NPRVPIIVTGNDFS-----TLYAPLIRDGRM 290 (464)
Q Consensus 221 Dal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~-----~~~V~VIaTTN~~~-----~LDpALlRpGRf 290 (464)
|.-...+.+ . +.+..+|.++++ ..|.|.... ..++.+|+|||.+. .|+++|+| ||
T Consensus 1346 nmp~~d~yg-~------q~~lelLRq~le------~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf 1410 (2695)
T 4akg_A 1346 NLPKLDKYG-S------QNVVLFLRQLME------KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA 1410 (2695)
T ss_dssp TCSCCCSSS-C------CHHHHHHHHHHH------TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE
T ss_pred ccccccccC-c------hhHHHHHHHHHh------cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee
Confidence 975444332 1 345556666655 445544322 24688999999994 89999999 77
Q ss_pred eEEEeC--CCHHHHHHHHHhhc
Q 012418 291 EKFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 291 D~~i~i--P~~eeR~eIl~~~~ 310 (464)
..+++ |+.+++..|+..++
T Consensus 1411 -~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1411 -AILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp -EEEECCCCTTTHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHH
Confidence 45665 99999999976554
No 75
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.19 E-value=5.4e-12 Score=125.16 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=82.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC-----CCCCC-hHHHHHH-HHHHHHHHH-HhCC---cEEEEeccccccccCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN-----GNAGE-PAKLIRQ-RYREAADII-KKGK---MCCLFINDLDAGAGRMG 228 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~-----~~~Ge-~~k~Ir~-~F~~A~~~~-~~~~---P~ILfIDEIDal~~~r~ 228 (464)
..+|||||||||||++|+++|+.++.+ ...+. ....+.. .+....... .... .+||||||+|.+..
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~--- 123 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA--- 123 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH---
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCCH---
Confidence 489999999999999999999999876 11111 1111100 000000000 0112 37999999997522
Q ss_pred CCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----CCchhhccCCcceEEEeC--CCHHH
Q 012418 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYWA--PTRED 301 (464)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----~LDpALlRpGRfD~~i~i--P~~ee 301 (464)
.+...|++.++... +.++|... ....++.||+|+|..+ .|+++|++ ||+..+.+ |+.++
T Consensus 124 ----------~~~~~Ll~~l~~~~-~~~~g~~~-~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~ 189 (331)
T 2r44_A 124 ----------KVQSALLECMQEKQ-VTIGDTTY-PLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKES 189 (331)
T ss_dssp ----------HHHHHHHHHHHHSE-EEETTEEE-ECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHH
T ss_pred ----------HHHHHHHHHHhcCc-eeeCCEEE-ECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHH
Confidence 12234445554211 22333311 1234567888888543 38999998 89877775 99999
Q ss_pred HHHHHHhhcCC
Q 012418 302 RIGVCSGIFRT 312 (464)
Q Consensus 302 R~eIl~~~~~~ 312 (464)
|.+|++.....
T Consensus 190 ~~~il~~~~~~ 200 (331)
T 2r44_A 190 ELEVMRRVSNM 200 (331)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHhcccc
Confidence 99999877654
No 76
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.19 E-value=8.8e-11 Score=106.45 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=61.3
Q ss_pred ccccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh----CCC-CCCCChHH
Q 012418 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM----GIN-GNAGEPAK 194 (464)
Q Consensus 120 ~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~el----g~~-~~~Ge~~k 194 (464)
++.++|++.... .+ ..+.+...+++|.....+..+.+++|+||||||||+|++++++.+ |.. .++. ...
T Consensus 4 ~~~~~f~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPK---NV--SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-TKD 77 (180)
T ss_dssp CTTCCSSSCCCC---SH--HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-HHH
T ss_pred hhhCccccccCC---CH--HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-HHH
Confidence 455677776653 11 124466777888876666678899999999999999999999997 333 1111 112
Q ss_pred HH---HHHHHHH--HHHH-HhCCcEEEEecccccc
Q 012418 195 LI---RQRYREA--ADII-KKGKMCCLFINDLDAG 223 (464)
Q Consensus 195 ~I---r~~F~~A--~~~~-~~~~P~ILfIDEIDal 223 (464)
.+ ...+... ...+ ....|.+|+|||++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 22 1111110 0111 2346899999999854
No 77
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.17 E-value=2.7e-10 Score=113.64 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=87.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh----CCC------CCCCChHHHHH------------------HHHHHHHHHHH-hC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM----GIN------GNAGEPAKLIR------------------QRYREAADIIK-KG 210 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el----g~~------~~~Ge~~k~Ir------------------~~F~~A~~~~~-~~ 210 (464)
..++|+||||||||++++++++++ +.. .........++ +++......+. ..
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 124 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERD 124 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcC
Confidence 389999999999999999999998 333 11111111111 12222222223 46
Q ss_pred CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC---CCCchhhccC
Q 012418 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF---STLYAPLIRD 287 (464)
Q Consensus 211 ~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~---~~LDpALlRp 287 (464)
.|.||||||+|.+ . ......|..++. .+......++.||++||++ +.+++.+.+
T Consensus 125 ~~~vlilDE~~~l----~---------~~~~~~L~~~~~---------~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~- 181 (389)
T 1fnn_A 125 LYMFLVLDDAFNL----A---------PDILSTFIRLGQ---------EADKLGAFRIALVIVGHNDAVLNNLDPSTRG- 181 (389)
T ss_dssp CCEEEEEETGGGS----C---------HHHHHHHHHHTT---------CHHHHSSCCEEEEEEESSTHHHHTSCHHHHH-
T ss_pred CeEEEEEECcccc----c---------hHHHHHHHHHHH---------hCCCCCcCCEEEEEEECCchHHHHhCHHhhh-
Confidence 6999999999987 1 122333444443 1000112578999999998 788888877
Q ss_pred CcceE-EEeC--CCHHHHHHHHHhhcC----CCCCChh---HHHHHhc
Q 012418 288 GRMEK-FYWA--PTREDRIGVCSGIFR----TDNVPKE---DIVKLVD 325 (464)
Q Consensus 288 GRfD~-~i~i--P~~eeR~eIl~~~~~----~~~v~~~---~la~lt~ 325 (464)
||.. .+.+ ++.++..+++...+. ...++.+ .+++.+.
T Consensus 182 -r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 182 -IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp -HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred -cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 6653 4555 688888888766543 2355555 5666673
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.16 E-value=1.3e-10 Score=130.45 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=82.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCC----------------CCCCChHHHHH----HHHHHHHHHHHhCCcEEEE
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM---GIN----------------GNAGEPAKLIR----QRYREAADIIKKGKMCCLF 216 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el---g~~----------------~~~Ge~~k~Ir----~~F~~A~~~~~~~~P~ILf 216 (464)
..+||+||||||||++|+++|+.+ +.+ ...|.+...+. ..|.. .++...++|||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~---~~~~~~~~vl~ 665 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTE---AVRRRPYSVIL 665 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHH---HHHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHH---HHHhCCCeEEE
Confidence 589999999999999999999998 222 11221111110 11211 12455679999
Q ss_pred eccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC--------------------
Q 012418 217 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-------------------- 276 (464)
Q Consensus 217 IDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~-------------------- 276 (464)
|||||.+. ..+...|++++++.....-.|. .....+++||+|||.
T Consensus 666 lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~g~--~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~ 730 (854)
T 1qvr_A 666 FDEIEKAH-------------PDVFNILLQILDDGRLTDSHGR--TVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRD 730 (854)
T ss_dssp ESSGGGSC-------------HHHHHHHHHHHTTTEECCSSSC--CEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHH
T ss_pred EecccccC-------------HHHHHHHHHHhccCceECCCCC--EeccCCeEEEEecCcChHHHhhhcccccchHHHHH
Confidence 99998652 2345667778774432211111 122356789999997
Q ss_pred ------CCCCchhhccCCcceEEEeC--CCHHHHHHHHHhhc
Q 012418 277 ------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 310 (464)
Q Consensus 277 ------~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~ 310 (464)
...+.|+|+. |||..+.+ |+.+++..|+..++
T Consensus 731 ~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l 770 (854)
T 1qvr_A 731 EVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQL 770 (854)
T ss_dssp HHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHH
Confidence 3356777775 89887775 78899988876554
No 79
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.13 E-value=1.1e-11 Score=119.09 Aligned_cols=129 Identities=17% Similarity=0.201 Sum_probs=75.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC------CCCC-ChHHHH-HHHHHH-------HH----HHHHhCCcEEEEec
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------GNAG-EPAKLI-RQRYRE-------AA----DIIKKGKMCCLFIN 218 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~G-e~~k~I-r~~F~~-------A~----~~~~~~~P~ILfID 218 (464)
.+..+||+||||||||++|+++++.+... -... -+...+ ..+|.. +. ..+......+||||
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lD 107 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLD 107 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEE
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEe
Confidence 34689999999999999999999987532 0011 112222 223321 10 11223456899999
Q ss_pred cccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC-------CCCchhhccCCcce
Q 012418 219 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIRDGRME 291 (464)
Q Consensus 219 EIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~-------~~LDpALlRpGRfD 291 (464)
|||.+... +...|+.++++.....+.+. .....++.||+|||.. ..+.++|++ ||.
T Consensus 108 Ei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~--~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~ 170 (265)
T 2bjv_A 108 ELATAPMM-------------VQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALA 170 (265)
T ss_dssp SGGGSCHH-------------HHHHHHHHHHHCEECCCCC----CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHC
T ss_pred chHhcCHH-------------HHHHHHHHHHhCCeecCCCc--ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhc
Confidence 99976432 23345566652211111111 1123467899999984 357788886 775
Q ss_pred -EEEeCCCHHHHH
Q 012418 292 -KFYWAPTREDRI 303 (464)
Q Consensus 292 -~~i~iP~~eeR~ 303 (464)
..+.+|...+|.
T Consensus 171 ~~~i~lp~L~~R~ 183 (265)
T 2bjv_A 171 FDVVQLPPLRERE 183 (265)
T ss_dssp SEEEECCCGGGCH
T ss_pred CcEEeCCChhhhh
Confidence 456678776653
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.13 E-value=4.6e-11 Score=127.26 Aligned_cols=129 Identities=14% Similarity=0.186 Sum_probs=77.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC-------CCCCChHHHH----------HHHHHHHHHHHHhC---CcEEEEecc
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN-------GNAGEPAKLI----------RQRYREAADIIKKG---KMCCLFIND 219 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~-------~~~Ge~~k~I----------r~~F~~A~~~~~~~---~P~ILfIDE 219 (464)
..|||+||||||||++|+++|+.++.. .....+...+ ...|..+ ..+ .++||||||
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~----~~g~l~~~~IL~IDE 117 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERL----TSGYLPEAEIVFLDE 117 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBC----CTTSGGGCSEEEEES
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhh----hccCCCcceeeeHHh
Confidence 489999999999999999999988542 1111111111 0111111 122 477999999
Q ss_pred ccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCC---CchhhccCCcceEEEeC
Q 012418 220 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFYWA 296 (464)
Q Consensus 220 IDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~---LDpALlRpGRfD~~i~i 296 (464)
|+.+. ..+...|+.+++.. .+.++|.. ...+..++|+|||.+.. +.+++++ ||...+++
T Consensus 118 I~r~~-------------~~~q~~LL~~lee~-~v~i~G~~--~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v 179 (500)
T 3nbx_X 118 IWKAG-------------PAILNTLLTAINER-QFRNGAHV--EKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWL 179 (500)
T ss_dssp GGGCC-------------HHHHHHHHHHHHSS-EEECSSSE--EECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEEC
T ss_pred Hhhhc-------------HHHHHHHHHHHHHH-hccCCCCc--CCcchhhhhhccccCCCccccHHHHHH--HHHHHHHH
Confidence 97432 22334566666532 22334441 12233356889996433 3458998 89888886
Q ss_pred --CCH-HHHHHHHHhhc
Q 012418 297 --PTR-EDRIGVCSGIF 310 (464)
Q Consensus 297 --P~~-eeR~eIl~~~~ 310 (464)
|+. +++.+|++...
T Consensus 180 ~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 180 DKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CSCCCHHHHHHHHTCCC
T ss_pred HHhhhhhhHHHHHhccc
Confidence 665 77889987654
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=3.3e-10 Score=113.24 Aligned_cols=156 Identities=9% Similarity=-0.003 Sum_probs=99.8
Q ss_pred HHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC-C-----C----CCC--CChHHHHHHHHHHHHHHHHhCC
Q 012418 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG-I-----N----GNA--GEPAKLIRQRYREAADIIKKGK 211 (464)
Q Consensus 144 ~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg-~-----~----~~~--Ge~~k~Ir~~F~~A~~~~~~~~ 211 (464)
+..+++.++... +..+|||||||+|||++|+++|+.++ . + .-. ......+|++...+...--.+.
T Consensus 6 ~~~L~~~i~~~~---~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~ 82 (305)
T 2gno_A 6 LETLKRIIEKSE---GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYT 82 (305)
T ss_dssp HHHHHHHHHTCS---SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSS
T ss_pred HHHHHHHHHCCC---CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCC
Confidence 344555555432 45899999999999999999999863 1 1 111 2244567887777611111344
Q ss_pred cEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcce
Q 012418 212 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 291 (464)
Q Consensus 212 P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD 291 (464)
..|+||||+|.+... ..++ |+..++ +..+.+.+|.+||.++.|.|+++. | -
T Consensus 83 ~kvviIdead~lt~~------------a~na-LLk~LE-------------ep~~~t~fIl~t~~~~kl~~tI~S--R-~ 133 (305)
T 2gno_A 83 RKYVIVHDCERMTQQ------------AANA-FLKALE-------------EPPEYAVIVLNTRRWHYLLPTIKS--R-V 133 (305)
T ss_dssp SEEEEETTGGGBCHH------------HHHH-THHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT--T-S
T ss_pred ceEEEeccHHHhCHH------------HHHH-HHHHHh-------------CCCCCeEEEEEECChHhChHHHHc--e-e
Confidence 689999999987321 1233 445554 344567888888999999999997 5 2
Q ss_pred EEEeCCCHHHHHHHHHhhcCCCCCChhHHHHHhcCCChhhHHHH
Q 012418 292 KFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 292 ~~i~iP~~eeR~eIl~~~~~~~~v~~~~la~lt~gfsgadLd~~ 335 (464)
..+..|+.++..+.+.... +++.+.+ ++..|-.+.++.++
T Consensus 134 ~~f~~l~~~~i~~~L~~~~---~i~~~~~-~~~~g~~~~al~~l 173 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI---GDLWEEL-PLLERDFKTALEAY 173 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH---TTHHHHC-GGGGTCHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh---CCCHHHH-HHHCCCHHHHHHHH
Confidence 2233478888888877666 3444433 45566666555544
No 82
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.04 E-value=6.9e-11 Score=140.49 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=79.2
Q ss_pred CCcE--EEEEcCCCccHHHHHHHHHHHhCCC--------------------------CCCCC----hHHHHHHHHHHHHH
Q 012418 158 VPLI--LGIWGGKGQGKSFQCELVFAKMGIN--------------------------GNAGE----PAKLIRQRYREAAD 205 (464)
Q Consensus 158 ~p~G--LLL~GPPGtGKT~LAkaIA~elg~~--------------------------~~~Ge----~~k~Ir~~F~~A~~ 205 (464)
+|+| +|||||||||||+||+++|.+...+ +|+++ +++.++.+|..|
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a-- 1156 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA-- 1156 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH--
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH--
Confidence 5555 9999999999999999999875221 56667 789999999888
Q ss_pred HHHhCCcEEEEeccccccccCCC---C--CCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCC
Q 012418 206 IIKKGKMCCLFINDLDAGAGRMG---G--TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 279 (464)
Q Consensus 206 ~~~~~~P~ILfIDEIDal~~~r~---~--~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~ 279 (464)
++..||+||+||+|+++++++ . ..+.....|.++++|. ++++. ....+|.|| +||+...
T Consensus 1157 --r~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~---------~~~~~---~~~~~v~v~-~~n~~~~ 1220 (1706)
T 3cmw_A 1157 --RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR---------KLAGN---LKQSNTLLI-FINQIRM 1220 (1706)
T ss_dssp --HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHH---------HHHHH---HHHTTCEEE-EEECEEE
T ss_pred --HhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHH---------HHHhh---hccCCeEEE-Eeccccc
Confidence 999999999999999988732 1 1123566777888885 44445 455677666 8887543
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.02 E-value=3.9e-10 Score=99.63 Aligned_cols=96 Identities=10% Similarity=0.116 Sum_probs=59.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCC---C------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGI---N------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 228 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~---~------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~ 228 (464)
.+.-|||+||||||||++|++|+++... + ....+ ......|..| ..++|||||||.+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~a-------~~g~l~ldei~~l~~~-- 91 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNA--PQLNDFIALA-------QGGTLVLSHPEHLTRE-- 91 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTS--SCHHHHHHHH-------TTSCEEEECGGGSCHH--
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcc--hhhhcHHHHc-------CCcEEEEcChHHCCHH--
Confidence 3456999999999999999999998632 2 11111 2233444444 4579999999977432
Q ss_pred CCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcce
Q 012418 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 291 (464)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD 291 (464)
+...|++++. ....++.+|+|||.+ ...+.+.|+|+
T Consensus 92 -----------~q~~Ll~~l~-------------~~~~~~~~I~~t~~~---~~~~~~~~~~~ 127 (145)
T 3n70_A 92 -----------QQYHLVQLQS-------------QEHRPFRLIGIGDTS---LVELAASNHII 127 (145)
T ss_dssp -----------HHHHHHHHHH-------------SSSCSSCEEEEESSC---HHHHHHHSCCC
T ss_pred -----------HHHHHHHHHh-------------hcCCCEEEEEECCcC---HHHHHHcCCCC
Confidence 2233444443 334457799999984 22344445543
No 84
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.99 E-value=7.2e-11 Score=104.26 Aligned_cols=87 Identities=11% Similarity=0.051 Sum_probs=56.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC---CCCCChH-HHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCcc
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN---GNAGEPA-KLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 233 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~---~~~Ge~~-k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~ 233 (464)
.+..||||||||||||++|++++++.. + ....... ...+..|.. ...++|||||||.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~-------a~~~~l~lDei~~l~~~------- 90 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDMPMELLQK-------AEGGVLYVGDIAQYSRN------- 90 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHCHHHHHHH-------TTTSEEEEEECTTCCHH-------
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHhhhhHHHh-------CCCCeEEEeChHHCCHH-------
Confidence 345699999999999999999999877 4 2222221 223334443 34689999999976332
Q ss_pred chhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC
Q 012418 234 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 277 (464)
Q Consensus 234 ~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~ 277 (464)
....|+++++. ....++.+|+|||..
T Consensus 91 ------~q~~Ll~~l~~------------~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 ------IQTGITFIIGK------------AERCRVRVIASCSYA 116 (143)
T ss_dssp ------HHHHHHHHHHH------------HTTTTCEEEEEEEEC
T ss_pred ------HHHHHHHHHHh------------CCCCCEEEEEecCCC
Confidence 22335555551 124557899999975
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.94 E-value=2.2e-09 Score=98.58 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=42.1
Q ss_pred cccccccccccccCccCcchhhhhHHHHHHHHhhhhCC-CCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 117 ~~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~-gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+..++.++|+++.... +. .+.+...++.++... ....|.+++||||||||||+||+++++++.
T Consensus 16 ~~~~~~~~f~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 16 PREILRASLSDVDLND---DG--RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CGGGGCCCTTSSCCSS---HH--HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHHcCCHhhccCCC---hh--HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455667788876541 11 122344556665522 222458999999999999999999999984
No 86
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.93 E-value=1.5e-09 Score=107.95 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=72.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC---C---CCCC-ChHHHH-HHHHHH-------H----HHHHHhCCcEEEEe
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI---N---GNAG-EPAKLI-RQRYRE-------A----ADIIKKGKMCCLFI 217 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~---~---~~~G-e~~k~I-r~~F~~-------A----~~~~~~~~P~ILfI 217 (464)
+.+..|||+||||||||++|++|++.... + -..+ -+...+ .++|.. + ...+.....++|||
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~L 102 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 102 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEE
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEE
Confidence 34568999999999999999999997632 2 1111 122222 122221 0 01112234579999
Q ss_pred ccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC-------CCCchhhccCCcc
Q 012418 218 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIRDGRM 290 (464)
Q Consensus 218 DEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~-------~~LDpALlRpGRf 290 (464)
||||.+... +...|++++++.....+.+. .....++.||+|||.. ..++++|.. ||
T Consensus 103 DEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~--~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl 165 (304)
T 1ojl_A 103 DEIGDISPL-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RL 165 (304)
T ss_dssp ESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBC--CCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HH
T ss_pred eccccCCHH-------------HHHHHHHHHhcCEeeecCCc--ccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hc
Confidence 999977431 23446666663322112222 1123568899999986 234455554 55
Q ss_pred eE-EEeCCCHHHH
Q 012418 291 EK-FYWAPTREDR 302 (464)
Q Consensus 291 D~-~i~iP~~eeR 302 (464)
.. .+.+|...+|
T Consensus 166 ~~~~i~lPpL~eR 178 (304)
T 1ojl_A 166 NVVAIEMPSLRQR 178 (304)
T ss_dssp SSEEEECCCSGGG
T ss_pred CeeEEeccCHHHh
Confidence 33 3557876665
No 87
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.86 E-value=1.9e-09 Score=107.47 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=41.9
Q ss_pred cccccccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 117 ~~~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+..++.++|+++..+.. . ...+...++.|+...+-..+.+|+||||||||||+||.++|+++.
T Consensus 115 ~~~~~~~tfd~f~~~~~---~--~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 115 PKSYRHIHLSDIDVNNA---S--RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CGGGGSCCGGGSCCCSH---H--HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHHhCCHhhCcCCCh---H--HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 33445567777765421 1 122344566666532222468999999999999999999999876
No 88
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.83 E-value=2.5e-09 Score=102.09 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=72.2
Q ss_pred HHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccc
Q 012418 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 221 (464)
Q Consensus 144 ~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~--~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEID 221 (464)
+..++.+++ +++...++|||||||||||++|.++|+.+.-. .++.... .|-.. ......||+|||+|
T Consensus 45 ~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-----~f~l~----~l~~~kIiiLDEad 113 (212)
T 1tue_A 45 LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-----HFWLE----PLTDTKVAMLDDAT 113 (212)
T ss_dssp HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-----CGGGG----GGTTCSSEEEEEEC
T ss_pred HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-----hhhhc----ccCCCCEEEEECCC
Confidence 455677766 45555789999999999999999999998533 2222110 11100 11224599999998
Q ss_pred ccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCcccc-CCCCCceEEEEeCC---CCCCchhhccCCcceEE
Q 012418 222 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-EENPRVPIIVTGND---FSTLYAPLIRDGRMEKF 293 (464)
Q Consensus 222 al~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~-~~~~~V~VIaTTN~---~~~LDpALlRpGRfD~~ 293 (464)
.- ..+.+...+.+++|.. .+.+|-.+.. ......|+|+|||. .+...+.|.. |+-.+
T Consensus 114 ~~------------~~~~~d~~lrn~ldG~-~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~~f 174 (212)
T 1tue_A 114 TT------------CWTYFDTYMRNALDGN-PISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RITVF 174 (212)
T ss_dssp HH------------HHHHHHHHCHHHHHTC-CEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCEEE
T ss_pred ch------------hHHHHHHHHHHHhCCC-cccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEEEE
Confidence 32 1233445677777632 2223333221 12245699999998 4444455554 66553
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.79 E-value=5.4e-08 Score=97.87 Aligned_cols=158 Identities=9% Similarity=0.088 Sum_probs=90.0
Q ss_pred CCcEEEE--EcCCCccHHHHHHHHHHHhC---------CC------CCCCChHHHHHH------------------HHHH
Q 012418 158 VPLILGI--WGGKGQGKSFQCELVFAKMG---------IN------GNAGEPAKLIRQ------------------RYRE 202 (464)
Q Consensus 158 ~p~GLLL--~GPPGtGKT~LAkaIA~elg---------~~------~~~Ge~~k~Ir~------------------~F~~ 202 (464)
.+..++| +||||+|||+|++.+++++. .. .........++. ++..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 128 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKA 128 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 4678999 99999999999999998862 22 011111111111 2222
Q ss_pred HHHHHH-hCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCC--CCceEEEEeCCCC-
Q 012418 203 AADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN--PRVPIIVTGNDFS- 278 (464)
Q Consensus 203 A~~~~~-~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~--~~V~VIaTTN~~~- 278 (464)
..+.+. ..+|.||+|||+|.+...... . ..+...|.+++. ++. ... .++.||+|||+++
T Consensus 129 l~~~l~~~~~~~llvlDe~~~l~~~~~~--~-----~~~l~~l~~~~~-----~~~-----~~~~~~~v~lI~~~~~~~~ 191 (412)
T 1w5s_A 129 LVDNLYVENHYLLVILDEFQSMLSSPRI--A-----AEDLYTLLRVHE-----EIP-----SRDGVNRIGFLLVASDVRA 191 (412)
T ss_dssp HHHHHHHHTCEEEEEEESTHHHHSCTTS--C-----HHHHHHHHTHHH-----HSC-----CTTSCCBEEEEEEEEETHH
T ss_pred HHHHHHhcCCeEEEEEeCHHHHhhccCc--c-----hHHHHHHHHHHH-----hcc-----cCCCCceEEEEEEeccccH
Confidence 222233 467999999999988643210 0 112222333333 010 112 5788999998776
Q ss_pred --CCc---hhhccCCcceEEEeC--CCHHHHHHHHHhhc----CCCCCChh---HHHHHhc------CCChhhHHH
Q 012418 279 --TLY---APLIRDGRMEKFYWA--PTREDRIGVCSGIF----RTDNVPKE---DIVKLVD------TFPGQSIDF 334 (464)
Q Consensus 279 --~LD---pALlRpGRfD~~i~i--P~~eeR~eIl~~~~----~~~~v~~~---~la~lt~------gfsgadLd~ 334 (464)
.++ +.+.+ |+...+.+ ++.++..+++...+ ....++.+ .|.+.+. |.+..-+.+
T Consensus 192 ~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l 265 (412)
T 1w5s_A 192 LSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVA 265 (412)
T ss_dssp HHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHH
T ss_pred HHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 334 55655 34333665 68888988875443 22334444 6677777 666544443
No 90
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.77 E-value=6.9e-09 Score=105.08 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=65.6
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC-----C--------CCCChHHHHHHHHHHHHHHHHhCCcEEEEeccc
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----G--------NAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 220 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----~--------~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEI 220 (464)
.|+.....+||+||||||||+||..+|.+.|.+ . +..+.+..++.+++ .+...+ +||||+|
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~----~l~~~~--LLVIDsI 191 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIAR----AMLQHR--VIVIDSL 191 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHH----HHHHCS--EEEEECC
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHH----HHhhCC--EEEEecc
Confidence 356666788999999999999999999875433 1 11223333333333 335444 9999999
Q ss_pred cccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhh
Q 012418 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 284 (464)
Q Consensus 221 Dal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpAL 284 (464)
+.+.....+........+.+.++|..+.. . ....++.+|+||| +..+++++
T Consensus 192 ~aL~~~~~~~s~~G~v~~~lrqlL~~L~~---------~---~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 192 KNVIGAAGGNTTSGGISRGAFDLLSDIGA---------M---AASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp TTTC-----------CCHHHHHHHHHHHH---------H---HHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccccccccccchHHHHHHHHHHHHHH---------H---HhhCCCEEEEEeC-CcccchhH
Confidence 99865443211122223555666655443 2 1223567888888 66777775
No 91
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.73 E-value=9.3e-09 Score=105.89 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=76.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCC-CCChHHHHHHHHHHHHHHHHhCCcEEEEecccccccc-CCCCCCc
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINGN-AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG-RMGGTTQ 232 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~-~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~-~r~~~~~ 232 (464)
+++.+.+++|+||||+|||+|++++++.++-... +..+.... .|... ...+.+++|+||++.+.. .+. ...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~--~~~lg----~~~q~~~~l~dd~~~~~~~~r~-l~~ 237 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRL--NFELG----VAIDQFLVVFEDVKGTGGESRD-LPS 237 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTH--HHHHG----GGTTCSCEEETTCCCSTTTTTT-CCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhH--HHHHH----HhcchhHHHHHHHHHHHHHHhh-ccc
Confidence 6778889999999999999999999998865411 12111111 11111 234557889999998865 222 111
Q ss_pred cchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceEEEeCCCHH
Q 012418 233 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 300 (464)
Q Consensus 233 ~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~~i~iP~~e 300 (464)
.. .++ ++..+.+ .++| .+.|+++||+++.+ ++++||||++..++.+...
T Consensus 238 ~~---~~~--~~~~l~~-----~ldG--------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~~~ 286 (377)
T 1svm_A 238 GQ---GIN--NLDNLRD-----YLDG--------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVPKT 286 (377)
T ss_dssp CS---HHH--HHHTTHH-----HHHC--------SSCEEECCSSSCCE-EECCCCEEEEECSCCCCHH
T ss_pred cC---cch--HHHHHHH-----HhcC--------CCeEeeccCchhhH-HHhhcCcccChhHHhhcHH
Confidence 11 111 1111122 1222 36789999999999 7999999999988875533
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.64 E-value=2.6e-08 Score=89.05 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=38.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCC-------CCCCChHHHHHHHHHHHHHHHHhCCcEEEEecccccc
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM---GIN-------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 223 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el---g~~-------~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal 223 (464)
....++|+||+|+|||+|++++++.+ |.. ..... + ...+|.||+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----------~----~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----------D----AAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----------G----GGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----------H----HHhCCCEEEEeCcccc
Confidence 45789999999999999999999988 433 11111 1 1235889999999864
No 93
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.56 E-value=7.8e-08 Score=104.05 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
..+||+||||||||+||++||+.+..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 48999999999999999999998753
No 94
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.51 E-value=1.2e-07 Score=114.22 Aligned_cols=91 Identities=16% Similarity=0.267 Sum_probs=63.2
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC------------------CCCC------------ChHHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------GNAG------------EPAKLIRQRYREAA 204 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~------------------~~~G------------e~~k~Ir~~F~~A~ 204 (464)
|++.+++++|+||||||||+||.+++.++... ...| ..+..++.++..+
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv- 1501 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA- 1501 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH-
Confidence 58899999999999999999999999886332 0112 3334444444444
Q ss_pred HHHHhCCcEEEEeccccccccCC---C--CCCccchhhHHHHHHHHhhhc
Q 012418 205 DIIKKGKMCCLFINDLDAGAGRM---G--GTTQYTVNNQMVNATLMNIAD 249 (464)
Q Consensus 205 ~~~~~~~P~ILfIDEIDal~~~r---~--~~~~~~~~~~~v~~~L~~llD 249 (464)
+..+|++|||||++++.+.. + +....+...+.+.++|..|..
T Consensus 1502 ---r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~ 1548 (2050)
T 3cmu_A 1502 ---RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1548 (2050)
T ss_dssp ---HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred ---hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHH
Confidence 88999999999999987632 1 111222346777888876665
No 95
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.45 E-value=3e-07 Score=86.47 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=69.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh--------C-CC-------CC-CCC-------------hHH--HHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM--------G-IN-------GN-AGE-------------PAK--LIRQRYREAAD 205 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el--------g-~~-------~~-~Ge-------------~~k--~Ir~~F~~A~~ 205 (464)
.+...|++|+||+|||++|.+.+.+. | .+ .. .+. ... .....+..+ .
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~ 82 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWI-K 82 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHT-T
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHh-h
Confidence 45688999999999999998865442 3 22 00 000 000 001122210 0
Q ss_pred HHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhc
Q 012418 206 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 285 (464)
Q Consensus 206 ~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALl 285 (464)
....+.+||+|||++.+.+.+....+ . ..+|.++.. .....+-||++|+.++.|+.+|+
T Consensus 83 -~~~~~~~vliIDEAq~l~~~~~~~~e--~-----~rll~~l~~-------------~r~~~~~iil~tq~~~~l~~~lr 141 (199)
T 2r2a_A 83 -KPENIGSIVIVDEAQDVWPARSAGSK--I-----PENVQWLNT-------------HRHQGIDIFVLTQGPKLLDQNLR 141 (199)
T ss_dssp -SGGGTTCEEEETTGGGTSBCCCTTCC--C-----CHHHHGGGG-------------TTTTTCEEEEEESCGGGBCHHHH
T ss_pred -ccccCceEEEEEChhhhccCccccch--h-----HHHHHHHHh-------------cCcCCeEEEEECCCHHHHhHHHH
Confidence 12456899999999999765421111 1 123333322 33445678999999999999977
Q ss_pred cCCcceEEEeC
Q 012418 286 RDGRMEKFYWA 296 (464)
Q Consensus 286 RpGRfD~~i~i 296 (464)
+ |++..+.+
T Consensus 142 ~--ri~~~~~l 150 (199)
T 2r2a_A 142 T--LVRKHYHI 150 (199)
T ss_dssp T--TEEEEEEE
T ss_pred H--HhheEEEE
Confidence 5 99998886
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.40 E-value=3.1e-07 Score=90.52 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=31.2
Q ss_pred HHHHHhhhhCCCC-CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 144 VHITKNFLNLPNV-KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 144 ~~i~Kn~l~~~gi-~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
...++++++ +. ++..+||||||||||||++|++||+.+++.
T Consensus 90 ~~~l~~~l~--~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~ 131 (267)
T 1u0j_A 90 ASVFLGWAT--KKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY 131 (267)
T ss_dssp HHHHHHHHT--TCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred HHHHHHHHh--CCCCCCcEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 444566655 33 334689999999999999999999987543
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.30 E-value=4.7e-06 Score=81.32 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=83.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC-----CCC-----CChHH-----------------------------------
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN-----GNA-----GEPAK----------------------------------- 194 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~-----~~~-----Ge~~k----------------------------------- 194 (464)
..++|+||+|+|||+|++.++++++.- ... .....
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKL 111 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccc
Confidence 589999999999999999999886411 000 00000
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEe
Q 012418 195 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG 274 (464)
Q Consensus 195 ~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTT 274 (464)
.+.+++....+.++...|.+|+|||++.+..... . ....+...|..+.+ . ..++.+|+|+
T Consensus 112 ~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~--~----~~~~~~~~L~~~~~-------------~-~~~~~~il~g 171 (350)
T 2qen_A 112 SLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS--R----GGKELLALFAYAYD-------------S-LPNLKIILTG 171 (350)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT--T----TTHHHHHHHHHHHH-------------H-CTTEEEEEEE
T ss_pred hHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc--c----chhhHHHHHHHHHH-------------h-cCCeEEEEEC
Confidence 1122222222222323499999999998764210 0 01223334444444 1 1356777777
Q ss_pred CCCCC---------CchhhccCCcceEEEeC--CCHHHHHHHHHhhcCCCC--CChh---HHHHHhcCCChh
Q 012418 275 NDFST---------LYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN--VPKE---DIVKLVDTFPGQ 330 (464)
Q Consensus 275 N~~~~---------LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~~~--v~~~---~la~lt~gfsga 330 (464)
..... ...++. ||....+.+ .+.++-.+++...+...+ ++.+ .+...+.|+|..
T Consensus 172 ~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 172 SEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGW 241 (350)
T ss_dssp SSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHH
Confidence 65321 122232 466556676 588888888876654332 3433 667788888854
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.21 E-value=7.8e-07 Score=111.06 Aligned_cols=136 Identities=13% Similarity=0.215 Sum_probs=83.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh-CCC-----CCCCChHHHHHHHHHHHHHHHH------------hCCcEEEEeccc
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM-GIN-----GNAGEPAKLIRQRYREAADIIK------------KGKMCCLFINDL 220 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el-g~~-----~~~Ge~~k~Ir~~F~~A~~~~~------------~~~P~ILfIDEI 220 (464)
.+-+||+||||||||+++......+ +.+ -........+...+..-.+..+ .++.+|||||||
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 3568999999999998876555443 211 1122233444444442110000 145589999999
Q ss_pred cccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccC-----CCCCceEEEEeCCC-----CCCchhhccCCcc
Q 012418 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE-----ENPRVPIIVTGNDF-----STLYAPLIRDGRM 290 (464)
Q Consensus 221 Dal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~-----~~~~V~VIaTTN~~-----~~LDpALlRpGRf 290 (464)
+.-.....| .+.+..+|..++|. .|.|... ...++.+|+|.|.+ ..|+++|+| ||
T Consensus 1384 Nmp~~D~yG-------tQ~~ielLrqlld~------~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F 1448 (3245)
T 3vkg_A 1384 NLPSTDKYG-------TQRVITFIRQMVEK------GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA 1448 (3245)
T ss_dssp TCCCCCTTS-------CCHHHHHHHHHHHH------SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC
T ss_pred CCCCccccc-------cccHHHHHHHHHHc------CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc
Confidence 854333221 24566777777762 2333321 22567899999987 569999999 77
Q ss_pred eEEEe-CCCHHHHHHHHHhh
Q 012418 291 EKFYW-APTREDRIGVCSGI 309 (464)
Q Consensus 291 D~~i~-iP~~eeR~eIl~~~ 309 (464)
-.+.. .|+.+....|+..+
T Consensus 1449 ~vi~i~~ps~esL~~If~ti 1468 (3245)
T 3vkg_A 1449 PILLVDFPSTSSLTQIYGTF 1468 (3245)
T ss_dssp CEEECCCCCHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHH
Confidence 77433 39999999996543
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.20 E-value=1.7e-05 Score=77.32 Aligned_cols=146 Identities=17% Similarity=0.219 Sum_probs=83.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC-------CC----CCChHHH---HHHH--------------------------
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN-------GN----AGEPAKL---IRQR-------------------------- 199 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~-------~~----~Ge~~k~---Ir~~-------------------------- 199 (464)
..++|+||+|+|||+|++.++++++.. .. ....... +.+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 489999999999999999999997644 11 0111111 1110
Q ss_pred -------------HHHHHHHHHhC--CcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCC
Q 012418 200 -------------YREAADIIKKG--KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 264 (464)
Q Consensus 200 -------------F~~A~~~~~~~--~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~ 264 (464)
+....+.+... .|.+|+|||++.+..... .+ +..+|..+.+ .
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~--~~-------~~~~l~~~~~-------------~- 167 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG--VN-------LLPALAYAYD-------------N- 167 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT--CC-------CHHHHHHHHH-------------H-
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc--hh-------HHHHHHHHHH-------------c-
Confidence 11122222321 499999999998765211 11 1122333333 1
Q ss_pred CCCceEEEEeCCCCCCc---------hhhccCCcceEEEeC--CCHHHHHHHHHhhcCC---CCCChhHHHHHhcCCChh
Q 012418 265 NPRVPIIVTGNDFSTLY---------APLIRDGRMEKFYWA--PTREDRIGVCSGIFRT---DNVPKEDIVKLVDTFPGQ 330 (464)
Q Consensus 265 ~~~V~VIaTTN~~~~LD---------pALlRpGRfD~~i~i--P~~eeR~eIl~~~~~~---~~v~~~~la~lt~gfsga 330 (464)
..++.+|+|++....+. .++ .||+...+.+ .+.++..+++...+.. ..-+...|...+.|+|..
T Consensus 168 ~~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G~P~~ 245 (357)
T 2fna_A 168 LKRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPGW 245 (357)
T ss_dssp CTTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSCHHH
T ss_pred CCCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHHH
Confidence 13567888887542211 122 2466555665 5888888887765421 111236788899999864
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.18 E-value=5.4e-06 Score=102.79 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=86.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC-----CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCc
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN-----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 232 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~-----~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~ 232 (464)
..+|+++.||||||||.+++++|+.+|.+ -.-+-....+..+|..+ . ...+.++|||++.+... -
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~----~-~~Gaw~~~DE~nr~~~e-----v 713 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGI----T-QIGAWGCFDEFNRLDEK-----V 713 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHH----H-HHTCEEEEETTTSSCHH-----H
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHH----H-hcCCEeeehhhhhcChH-----H
Confidence 34688999999999999999999999988 23344445566666655 2 22489999999865332 1
Q ss_pred cchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeC----CCCCCchhhccCCcceEEEeC--CCHHHHHHHH
Q 012418 233 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 306 (464)
Q Consensus 233 ~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN----~~~~LDpALlRpGRfD~~i~i--P~~eeR~eIl 306 (464)
-.+-.+.+...+..+.+....+.+.|... .-.+...|++|.| ....||++|.+ ||- .+++ |+.+...+|+
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i-~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr-~v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEET-PLSPHTAVFITLNPGYNGRSELPENLKK--SFR-EFSMKSPQSGTIAEMI 789 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEE-ECCTTCEEEEEECCCSSSSCCCCHHHHT--TEE-EEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEE-ecCCCceEEEEeCCCccCcccccHHHHh--heE-EEEeeCCCHHHHHHHH
Confidence 11111222222222334333444555421 1235567889999 67789999988 553 3553 9999999884
No 101
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.89 E-value=3.2e-05 Score=70.91 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
|++....++|+||||+|||+|+..+|...+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 45 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSG 45 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 677788999999999999999999998433
No 102
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.80 E-value=8.5e-06 Score=86.39 Aligned_cols=121 Identities=14% Similarity=0.042 Sum_probs=68.7
Q ss_pred EEEEEcCCCccHHHHHHHH-HHHhCCCCC---CCC-hHHHHHHH-----HHHHHHHHHhCCcEEEEeccccccccCCCCC
Q 012418 161 ILGIWGGKGQGKSFQCELV-FAKMGINGN---AGE-PAKLIRQR-----YREAADIIKKGKMCCLFINDLDAGAGRMGGT 230 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaI-A~elg~~~~---~Ge-~~k~Ir~~-----F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~ 230 (464)
.|||.|+||| ||++|+++ ++-+....+ .+. ...+.... |..-...+....-.+||||||+.+-.
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~----- 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLADGGILAVDHLEGAPE----- 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEEEEECHHHHTTTSEEEEECCTTCCH-----
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcccCCCeeEEcCCCeeehHhhhhCCH-----
Confidence 6999999999 99999999 554321100 011 11111000 00000001122346999999986522
Q ss_pred CccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC-----------CCchhhccCCcceEEEeC---
Q 012418 231 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----------TLYAPLIRDGRMEKFYWA--- 296 (464)
Q Consensus 231 ~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~-----------~LDpALlRpGRfD~~i~i--- 296 (464)
.....|++.+.. ..+.+.|. .-..+..||+|+|... .|++++|. |||.++.+
T Consensus 315 --------~~qsaLlEaMEe-~~VtI~G~---~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~ 380 (506)
T 3f8t_A 315 --------PHRWALMEAMDK-GTVTVDGI---ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVD 380 (506)
T ss_dssp --------HHHHHHHHHHHH-SEEEETTE---EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-
T ss_pred --------HHHHHHHHHHhC-CcEEECCE---EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCC
Confidence 223445555553 22345554 3446778999999876 89999997 99998875
Q ss_pred CCHHH
Q 012418 297 PTRED 301 (464)
Q Consensus 297 P~~ee 301 (464)
|+.+.
T Consensus 381 pd~e~ 385 (506)
T 3f8t_A 381 PRPGE 385 (506)
T ss_dssp -----
T ss_pred CChhH
Confidence 66554
No 103
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.78 E-value=1.9e-05 Score=80.16 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=48.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhC---CC-------C--------CCCChH--------HHHHHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMG---IN-------G--------NAGEPA--------KLIRQRYREAADII 207 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg---~~-------~--------~~Ge~~--------k~Ir~~F~~A~~~~ 207 (464)
.|++....++|+||||+|||+||..++..+. -. . ..|... ..+.+.+..+..++
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 3777778999999999999999999997652 11 0 011000 01233344444445
Q ss_pred HhCCcEEEEecccccccc
Q 012418 208 KKGKMCCLFINDLDAGAG 225 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~ 225 (464)
+...|.+|+||++..+..
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 577899999999999874
No 104
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.76 E-value=5.8e-05 Score=70.21 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=26.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|++....++|+||||+|||+|++.+|...
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 467777899999999999999999999963
No 105
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.76 E-value=7.8e-05 Score=69.54 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
|++....++|.||+|+|||+|+++++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 677778999999999999999999983
No 106
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.75 E-value=2.7e-05 Score=79.50 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=48.6
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhC---CC------CCCCCh-----------------HHHHHHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMG---IN------GNAGEP-----------------AKLIRQRYREAADII 207 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg---~~------~~~Ge~-----------------~k~Ir~~F~~A~~~~ 207 (464)
.|+++...++|+||||+|||+||..+|..+. -. ...-.. ...+.+.+..+..++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 3778888999999999999999999998752 11 000000 001223344444445
Q ss_pred HhCCcEEEEecccccccc
Q 012418 208 KKGKMCCLFINDLDAGAG 225 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~ 225 (464)
+...|.+++||.+-.+.+
T Consensus 136 ~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HTSCCSEEEEECTTTCCC
T ss_pred hhcCCCeEEehHhhhhcC
Confidence 568899999999988765
No 107
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.72 E-value=7.7e-05 Score=90.38 Aligned_cols=110 Identities=14% Similarity=0.179 Sum_probs=71.1
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC----------C--------CCC--------ChHHHHHHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------G--------NAG--------EPAKLIRQRYREAADIIK 208 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~----------~--------~~G--------e~~k~Ir~~F~~A~~~~~ 208 (464)
|+.+...++|+|+||+|||+||..+|..+..+ + ..| ..+..+++++..+..+.+
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 68888999999999999999999999987433 0 011 111225566666655556
Q ss_pred hCCcEEEEecccccccc-C----CCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCC
Q 012418 209 KGKMCCLFINDLDAGAG-R----MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 276 (464)
Q Consensus 209 ~~~P~ILfIDEIDal~~-~----r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~ 276 (464)
...|++||||.|..+.. . +.+..+.+...+.+.+++..|.. . ....+|+||+++.-
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~---------l---Ake~~v~VI~l~Qv 868 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG---------N---LKQSNTLLIFINQI 868 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH---------H---HHTTTCEEEEEECC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHH---------H---HHHhCCEEEEeccc
Confidence 68899999999999875 2 11111113334556665544332 2 23456788877643
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.71 E-value=6.7e-05 Score=68.78 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-++|.||+|+|||+|+++|+..+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999997643
No 109
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.70 E-value=7.9e-05 Score=76.26 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=48.4
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCC-------C--------CCCChH--------HHHHHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GIN-------G--------NAGEPA--------KLIRQRYREAADII 207 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el---g~~-------~--------~~Ge~~--------k~Ir~~F~~A~~~~ 207 (464)
.|++....++|+||||+|||+||..+|.++ |.+ . ..|... ..+.+++..+..++
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 377788899999999999999999998775 222 0 001000 01223344443444
Q ss_pred HhCCcEEEEecccccccc
Q 012418 208 KKGKMCCLFINDLDAGAG 225 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~ 225 (464)
+...+.+|+||.+..+..
T Consensus 149 ~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTTCCSEEEEECTTTCCC
T ss_pred hcCCCCEEEEeChHHhcc
Confidence 567899999999999875
No 110
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.69 E-value=9.5e-05 Score=75.66 Aligned_cols=125 Identities=18% Similarity=0.234 Sum_probs=69.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC------CCCC-ChHHHH-HHHHHHH-----------HHHHHhCCcEEEEeccc
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN------GNAG-EPAKLI-RQRYREA-----------ADIIKKGKMCCLFINDL 220 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~------~~~G-e~~k~I-r~~F~~A-----------~~~~~~~~P~ILfIDEI 220 (464)
..+||+|++|||||++|++|....... -..+ -++..+ .++|... ...+......+||||||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei 240 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI 240 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESG
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcCh
Confidence 347999999999999999999876533 1111 122222 3444321 01112334579999999
Q ss_pred cccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcce---------
Q 012418 221 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME--------- 291 (464)
Q Consensus 221 Dal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD--------- 291 (464)
+.+-. .++..|++++++....-+.|. ......+-||+|||.. ...+++.|+|.
T Consensus 241 ~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~---l~~~~~~g~fr~dl~~rl~~ 302 (387)
T 1ny5_A 241 GELSL-------------EAQAKLLRVIESGKFYRLGGR--KEIEVNVRILAATNRN---IKELVKEGKFREDLYYRLGV 302 (387)
T ss_dssp GGCCH-------------HHHHHHHHHHHHSEECCBTCC--SBEECCCEEEEEESSC---HHHHHHTTSSCHHHHHHHTT
T ss_pred hhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCCCC---HHHHHHcCCccHHHHHhhcC
Confidence 97632 233446666652221122222 1122467799999973 22344445443
Q ss_pred EEEeCCCHHHH
Q 012418 292 KFYWAPTREDR 302 (464)
Q Consensus 292 ~~i~iP~~eeR 302 (464)
..+.+|...+|
T Consensus 303 ~~i~lPpLreR 313 (387)
T 1ny5_A 303 IEIEIPPLRER 313 (387)
T ss_dssp EEEECCCGGGC
T ss_pred CeecCCcchhc
Confidence 23556776655
No 111
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.64 E-value=6.9e-05 Score=68.99 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=27.1
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.|++....++|.||+|+|||+|++.++..+-
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3677778899999999999999999998653
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.63 E-value=9.3e-05 Score=67.88 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
|++....++|+||||+|||+|++.++..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56777889999999999999999999664
No 113
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.60 E-value=6.1e-05 Score=76.74 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=47.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCC------CCCCChHH-----------------HHHHHHHHHHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GIN------GNAGEPAK-----------------LIRQRYREAADII 207 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el---g~~------~~~Ge~~k-----------------~Ir~~F~~A~~~~ 207 (464)
.|++....++|+||||+|||+||..+|.++ |.. ...-+... .+.++...+..++
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 367888899999999999999999999875 222 00000000 0122333333344
Q ss_pred HhCCcEEEEecccccccc
Q 012418 208 KKGKMCCLFINDLDAGAG 225 (464)
Q Consensus 208 ~~~~P~ILfIDEIDal~~ 225 (464)
+...+.+|+||.+..+..
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 567899999999998864
No 114
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.55 E-value=0.0001 Score=75.09 Aligned_cols=124 Identities=19% Similarity=0.291 Sum_probs=68.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC-----CCCC-ChHHH-HHHHHHHH-----------HHHHHhCCcEEEEeccccc
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN-----GNAG-EPAKL-IRQRYREA-----------ADIIKKGKMCCLFINDLDA 222 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~-----~~~G-e~~k~-Ir~~F~~A-----------~~~~~~~~P~ILfIDEIDa 222 (464)
.+|++|++||||+.+|++|....+.. -..+ -++.. -.++|... ...+.......||||||+.
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~ 233 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGE 233 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGG
T ss_pred hheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhh
Confidence 48999999999999999999887643 0111 11111 22344211 0011223446899999997
Q ss_pred cccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCCchhhccCCcceE---------E
Q 012418 223 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK---------F 293 (464)
Q Consensus 223 l~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~LDpALlRpGRfD~---------~ 293 (464)
+-. .++..|++++++.....+.+. ......+-||+|||.. ...+++.|+|.. .
T Consensus 234 l~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~---l~~~v~~g~fr~dL~~rl~~~~ 295 (368)
T 3dzd_A 234 LDQ-------------RVQAKLLRVLETGSFTRLGGN--QKIEVDIRVISATNKN---LEEEIKKGNFREDLYYRLSVFQ 295 (368)
T ss_dssp SCH-------------HHHHHHHHHHHHSEECCBTCC--CBEECCCEEEEEESSC---HHHHHHTTSSCHHHHHHHTSEE
T ss_pred CCH-------------HHHHHHHHHHHhCCcccCCCC--cceeeeeEEEEecCCC---HHHHHHcCCccHHHHHHhCCeE
Confidence 632 233456666653222222222 0112356799999963 233445566543 4
Q ss_pred EeCCCHHHH
Q 012418 294 YWAPTREDR 302 (464)
Q Consensus 294 i~iP~~eeR 302 (464)
+.+|...+|
T Consensus 296 i~lPpLreR 304 (368)
T 3dzd_A 296 IYLPPLRER 304 (368)
T ss_dssp EECCCGGGS
T ss_pred EeCCChhhc
Confidence 567776665
No 115
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.50 E-value=7.4e-05 Score=67.15 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|++.|+.|+|.|+||+|||++++.++..++..
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLP 32 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 45678899999999999999999999999876
No 116
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.48 E-value=0.00051 Score=68.12 Aligned_cols=141 Identities=9% Similarity=0.032 Sum_probs=85.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCC-----CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccc-cccCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GIN-----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRM 227 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el---g~~-----~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDa-l~~~r 227 (464)
+.+..+|||||+|.||+..++.+++.+ +.. .+-++ ..++++...+...--.+...|++|||++. +...
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~- 92 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN--TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAA- 92 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT--CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTT-
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC--CCHHHHHHHhcCcCCccCCeEEEEECCCCCCChH-
Confidence 456799999999999999999999875 322 12222 34566666663332356678999999986 3211
Q ss_pred CCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCC------CCCchhhccCCcceEEEe--CCCH
Q 012418 228 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF------STLYAPLIRDGRMEKFYW--APTR 299 (464)
Q Consensus 228 ~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~------~~LDpALlRpGRfD~~i~--iP~~ 299 (464)
.. ..|...+. +..+.+++|.+|+.+ ..+.+++..+| -. +. .|+.
T Consensus 93 -----------~~-~aLl~~le-------------~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~--~~-~~~~~l~~ 144 (343)
T 1jr3_D 93 -----------IN-EQLLTLTG-------------LLHDDLLLIVRGNKLSKAQENAAWFTALANRS--VQ-VTCQTPEQ 144 (343)
T ss_dssp -----------HH-HHHHHHHT-------------TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTC--EE-EEECCCCT
T ss_pred -----------HH-HHHHHHHh-------------cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCc--eE-EEeeCCCH
Confidence 11 22444444 223345566666553 35777877644 32 33 3677
Q ss_pred HHHHHHHHhhcCCCC--CChhHHHHHhcCCC
Q 012418 300 EDRIGVCSGIFRTDN--VPKEDIVKLVDTFP 328 (464)
Q Consensus 300 eeR~eIl~~~~~~~~--v~~~~la~lt~gfs 328 (464)
++..+.++..+...+ ++.+.+..++....
T Consensus 145 ~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~ 175 (343)
T 1jr3_D 145 AQLPRWVAARAKQLNLELDDAANQVLCYCYE 175 (343)
T ss_dssp THHHHHHHHHHHHTTCEECHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 777777777666555 44554444444333
No 117
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.48 E-value=0.00014 Score=72.44 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=27.0
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|++....++|+||||+|||+||..+|..+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 377778899999999999999999999875
No 118
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.43 E-value=0.00039 Score=55.16 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 296 APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 296 iP~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
+|+.++|.+|++.++.. .+++.+.|++.|+||||+||..
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~ 44 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKG 44 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHH
Confidence 59999999998877764 4677889999999999999974
No 119
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.39 E-value=0.0001 Score=70.14 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=30.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..++.|+.|+|.||||+||+++|+.+|+.+|+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 467888999999999999999999999999987
No 120
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.39 E-value=0.00048 Score=69.28 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=26.9
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|++....++|+||||+|||+||..+|...
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 377777889999999999999999999974
No 121
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.38 E-value=0.00011 Score=65.89 Aligned_cols=29 Identities=14% Similarity=-0.088 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.++.|+|.||||||||++|+.+|..+|.+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~ 32 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRI 32 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35689999999999999999999999987
No 122
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.31 E-value=0.00035 Score=62.92 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=18.6
Q ss_pred CCCcEEEEEcCCCccHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCE 177 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAk 177 (464)
+.+..++|.||+|+|||+|++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 345678999999999999999
No 123
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.30 E-value=0.00039 Score=70.32 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=27.2
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|++....++|+||||+|||+|++.++..+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367777899999999999999999999987
No 124
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.30 E-value=0.00043 Score=71.59 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=25.6
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|++.-..++|+||||||||+|++.+|-..
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 377788899999999999999999776443
No 125
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.30 E-value=0.0014 Score=82.56 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=84.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC-----CCCCChHHHHHHHHHHHHHHHHhCCcEEEEeccccccccCCCCCCcc
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN-----GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 233 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~-----~~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~ 233 (464)
-.|..+.||+|||||.+++.+|+.+|.. -..|-....+..+|.-+ ++. .+...|||++.+-.. --
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~---~~~--GaW~cfDEfNrl~~~-----vL 673 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGL---CQC--GAWGCFDEFNRLEER-----IL 673 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHH---HHH--TCEEEEETTTSSCHH-----HH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhH---hhc--CcEEEehhhhcCCHH-----HH
Confidence 3477899999999999999999999988 33344445555556544 233 467788999865221 11
Q ss_pred chhhHHHHHHHHhhhcCCCcccCC-CccccCCCCCceEEEEeC----CCCCCchhhccCCcceEEEe--CCCHHHHHHHH
Q 012418 234 TVNNQMVNATLMNIADNPTNVQLP-GMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW--APTREDRIGVC 306 (464)
Q Consensus 234 ~~~~~~v~~~L~~llD~~~~v~ld-G~~~~~~~~~V~VIaTTN----~~~~LDpALlRpGRfD~~i~--iP~~eeR~eIl 306 (464)
.+-.+.+......+.+....+.+. |... .-.+..-|++|.| ....||++|.. ||-- +. .|+.+...+|+
T Consensus 674 Svv~~qi~~I~~a~~~~~~~~~~~~G~~i-~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~-v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 674 SAVSQQIQTIQVALKENSKEVELLGGKNI-SLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRS-MAMIKPDREMIAQVM 749 (3245)
T ss_dssp HHHHHHHHHHHHHHHHTCSEECCC---CE-ECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEE-EECCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCCEE-eecCCeEEEEEeCCCccCcccChHHHHh--hcEE-EEEeCCCHHHHHHHH
Confidence 111222222223334445555666 6311 2245667899999 56799999998 4433 44 39999999985
No 126
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.29 E-value=0.00015 Score=64.44 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|+.|+|.||||+|||+++++++..++.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 5679999999999999999999999865
No 127
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.29 E-value=0.00032 Score=68.90 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhhhh-CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 139 MDKVVVHITKNFLN-LPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 139 ~d~~~~~i~Kn~l~-~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..++...+...++. ......|+.++|.||||+|||++|+.++.+++
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 12 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33455556666664 23445678999999999999999999999883
No 128
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.00017 Score=66.07 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=26.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+.+.+.|+|.||||||||++++++|+.+|..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~ 52 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVP 52 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3455689999999999999999999999887
No 129
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.26 E-value=0.00018 Score=72.83 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=52.5
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh-----CCC---------------CCCCCh--------HHHHHHH-HHHHH
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GIN---------------GNAGEP--------AKLIRQR-YREAA 204 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el-----g~~---------------~~~Ge~--------~k~Ir~~-F~~A~ 204 (464)
-|++.. .++|+||||+|||+||--++.++ +-. ...|-. +....++ +..+.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 356555 68999999999999988777664 211 001100 0012222 22221
Q ss_pred HH--HHhCCcEEEEeccccccccCCC--CC---Cccc--hhhHHHHHHHHhhh
Q 012418 205 DI--IKKGKMCCLFINDLDAGAGRMG--GT---TQYT--VNNQMVNATLMNIA 248 (464)
Q Consensus 205 ~~--~~~~~P~ILfIDEIDal~~~r~--~~---~~~~--~~~~~v~~~L~~ll 248 (464)
.+ ++..+|.+|+||=|-++..+.. +. .+.. ...|.+.+.|..|.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~ 155 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVT 155 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHH
T ss_pred HHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHH
Confidence 22 3577899999999999975321 11 0111 34566777776554
No 130
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.23 E-value=0.00031 Score=65.29 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
|+++...++|+|+||+|||.+|--+|.+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 6777889999999999999999877644
No 131
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.23 E-value=0.00052 Score=67.78 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=26.6
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|++....++|+||||+|||++|..+|...
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 377778899999999999999999999864
No 132
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.21 E-value=0.00024 Score=63.64 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=27.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+..++.|+|+|+||+|||++++.++..++..
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~ 38 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLK 38 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCe
Confidence 3445678999999999999999999999876
No 133
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.19 E-value=0.0002 Score=63.35 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+..|+|.||||||||++++.+|..++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~ 31 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNME 31 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999875
No 134
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.19 E-value=0.0033 Score=66.60 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
.++.++|+||+|+|||+||..+++
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 457899999999999999999975
No 135
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.18 E-value=0.0003 Score=64.23 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=27.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-..|..|+|.|+||+|||++|+.++..++++
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 3456789999999999999999999999986
No 136
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.17 E-value=0.00029 Score=57.63 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 296 APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 296 iP~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
.|+.++|.+|++.++++ .+++++.|++.|+||||+||..
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~ 52 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKG 52 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 49999999999887764 4678889999999999999974
No 137
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.17 E-value=0.00025 Score=63.37 Aligned_cols=28 Identities=39% Similarity=0.777 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|+.|+|.|+||+|||++|+.++..+|++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~ 30 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYT 30 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 6789999999999999999999999875
No 138
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.14 E-value=0.00029 Score=61.81 Aligned_cols=26 Identities=12% Similarity=-0.055 Sum_probs=24.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|+|.||||+|||++|+.+++.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 58899999999999999999999987
No 139
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.14 E-value=0.0051 Score=65.30 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
..++.|.|+|++|+|||+||+.+++
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999999997
No 140
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.12 E-value=0.00026 Score=63.50 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=25.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..|+|.|+||+|||++|+.++..+|++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 358999999999999999999999987
No 141
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.11 E-value=0.00049 Score=65.80 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHhhhh-CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 145 HITKNFLN-LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 145 ~i~Kn~l~-~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
.+.+.++. ......|..++|.||||+|||++|+.++..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 17 RNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp HHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred HHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34444443 345667889999999999999999999999874
No 142
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.11 E-value=0.00029 Score=63.36 Aligned_cols=30 Identities=40% Similarity=0.625 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..++.|+|.|+||+|||++|+.+|+.++.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 345689999999999999999999999876
No 143
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.10 E-value=0.00034 Score=66.27 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=26.8
Q ss_pred HHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 147 ~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.+.|....+. .|..++|.||||+|||++++++++.+|+.
T Consensus 16 ~~~~~~~~~~-~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 16 ENLYFQSMAS-KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp -----------CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhcC-CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3444433333 36789999999999999999999999986
No 144
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.09 E-value=0.00025 Score=62.69 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHH-HhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFA-KMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~-elg~~ 186 (464)
|+.|+|.||||+|||++|+.++. .++..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 67899999999999999999998 45543
No 145
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.09 E-value=0.00041 Score=61.87 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..|+.|+|.|+||+|||++|+.++..+|..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 33 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWV 33 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 346789999999999999999999999875
No 146
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.08 E-value=0.00031 Score=62.91 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.+..|+|.||||+|||++|+.+++.+|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~ 31 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFK 31 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 34578999999999999999999999876
No 147
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.05 E-value=0.00039 Score=64.50 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.+..|+|.|+||+|||++|+.+|+.+++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 45689999999999999999999999876
No 148
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.03 E-value=0.00026 Score=63.15 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|+.|+|.|+||+|||++|+.+++.++.+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 35689999999999999999999999987
No 149
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.03 E-value=0.0004 Score=63.47 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.++.|+|.||||+|||++|+.+++.+|..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~ 45 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYP 45 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCE
Confidence 35689999999999999999999999876
No 150
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.02 E-value=0.0083 Score=68.01 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..++.+.|+|++|+|||+||+.+++.
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 34678999999999999999999876
No 151
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.02 E-value=0.00033 Score=62.55 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=24.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|+|.||||+|||++|+.+|+.++++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 48899999999999999999999986
No 152
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.01 E-value=0.0013 Score=69.03 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=66.1
Q ss_pred cEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEe-----CCCCCCchhhcc
Q 012418 212 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG-----NDFSTLYAPLIR 286 (464)
Q Consensus 212 P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTT-----N~~~~LDpALlR 286 (464)
..|||+||||+++...+ .....+...-|++.|+.++++.++.. .|......+|.+|+|+ |..+ +-|+|+
T Consensus 251 ~~il~~DEidki~~~~~-~~~~D~s~egvq~aLL~~le~~~~~~---~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~- 324 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGE-YSGADVSREGVQRDLLPLVEGSTVST---KHGMVKTDHILFIASGAFQVARPSD-LIPELQ- 324 (444)
T ss_dssp HCEEEEETGGGGSCCSS-CSSSHHHHHHHHHHHHHHHHCCEEEE---TTEEEECTTCEEEEEECCSSCCGGG-SCHHHH-
T ss_pred CCeeeHHHHHHHhhccC-CCCCCchHHHHHHHHHHHhccccccc---ccceecCCcEEEEeccccccCChhh-cchHHh-
Confidence 46999999999986643 23445666778899999999654432 2333566889999998 5544 447787
Q ss_pred CCcceEEEeC--CCHHHHHHHHH
Q 012418 287 DGRMEKFYWA--PTREDRIGVCS 307 (464)
Q Consensus 287 pGRfD~~i~i--P~~eeR~eIl~ 307 (464)
|||...+.+ .+.++..+|+.
T Consensus 325 -~R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 325 -GRLPIRVELTALSAADFERILT 346 (444)
T ss_dssp -TTCCEEEECCCCCHHHHHHHHH
T ss_pred -cccceeeeCCCCCHHHHHHHHH
Confidence 599998887 79999999973
No 153
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.00 E-value=0.00046 Score=61.06 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=25.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..|+|.|+||||||++++.+|+.+|++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~ 34 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLE 34 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 378999999999999999999999987
No 154
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.99 E-value=0.00043 Score=62.35 Aligned_cols=29 Identities=41% Similarity=0.610 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|+.|+|.|+||+|||++|+.++..+++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~ 39 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFT 39 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 35689999999999999999999999875
No 155
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.99 E-value=0.00038 Score=65.02 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..|+.|+|.||||+|||++|+.+|+++++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELK 34 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 456789999999999999999999999875
No 156
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.98 E-value=0.00036 Score=62.26 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++.|+|.||||+|||++|+.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999988
No 157
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.95 E-value=0.00041 Score=60.35 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..|+|.||||+|||++|+.+ ..+|.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 36889999999999999999 888886
No 158
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.93 E-value=0.00054 Score=62.41 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..++.|+|.|+||+|||++|+.+++++|+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~ 42 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFV 42 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 345789999999999999999999999875
No 159
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.93 E-value=0.00057 Score=65.11 Aligned_cols=30 Identities=20% Similarity=0.007 Sum_probs=27.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+.|.-|+|.||||+|||++|+.+++++|+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~ 56 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYC 56 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 467889999999999999999999999876
No 160
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.92 E-value=0.00045 Score=62.60 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH-hCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK-MGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e-lg~~ 186 (464)
+..|+|+|+||||||++++.+|.. +|++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~ 38 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQ 38 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 457999999999999999999999 6765
No 161
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.92 E-value=0.0006 Score=62.50 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+.+..++|.||+|+|||+++++++..+|..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 456789999999999999999999999765
No 162
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.91 E-value=0.00062 Score=61.74 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
++.|+|.|+||+|||++|+.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 5678999999999999999999998863
No 163
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.91 E-value=0.00054 Score=63.63 Aligned_cols=29 Identities=38% Similarity=0.546 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|+.|+|.||||+|||++|+.+|+.++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 45679999999999999999999999975
No 164
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.89 E-value=0.00047 Score=60.84 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=24.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+.|+|.|+||+|||++|+.++..+|++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 458999999999999999999999986
No 165
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.89 E-value=0.0011 Score=79.41 Aligned_cols=91 Identities=14% Similarity=0.274 Sum_probs=61.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhC------------------------CC------CCCCChHHHHHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG------------------------IN------GNAGEPAKLIRQRYREAA 204 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg------------------------~~------~~~Ge~~k~Ir~~F~~A~ 204 (464)
|++.-+.+++|||+|||||+||-.++.+.. ++ .+....+ +.+..+.
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e----~~l~~~~ 1502 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE----QALEICD 1502 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHH----HHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHH----HHHHHHH
Confidence 444446699999999999999987776532 11 2233333 3344455
Q ss_pred HHHHhCCcEEEEeccccccccCCC-----CCCccchhhHHHHHHHHhhhc
Q 012418 205 DIIKKGKMCCLFINDLDAGAGRMG-----GTTQYTVNNQMVNATLMNIAD 249 (464)
Q Consensus 205 ~~~~~~~P~ILfIDEIDal~~~r~-----~~~~~~~~~~~v~~~L~~llD 249 (464)
.+++..+|++|+||-+.++.++.. +..+.+...+...+.|..|..
T Consensus 1503 ~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~ 1552 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1552 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHH
Confidence 556899999999999999977643 223455677788888877765
No 166
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.88 E-value=0.0005 Score=61.75 Aligned_cols=29 Identities=28% Similarity=0.109 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.++.+..++|.||||+|||+++++++..+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 45667789999999999999999999864
No 167
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.88 E-value=0.0021 Score=61.67 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH---hCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK---MGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e---lg~~ 186 (464)
.+..|+|.|+||+|||++|+.++.. .|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~ 34 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNID 34 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCE
Confidence 3567999999999999999999998 5654
No 168
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.87 E-value=0.00061 Score=62.65 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=24.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+|.||||+|||++|+.+++++|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999999886
No 169
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.86 E-value=0.0047 Score=58.08 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=65.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCC-------CC-CCCh-----------------------------HHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM---GIN-------GN-AGEP-----------------------------AKLIRQRY 200 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el---g~~-------~~-~Ge~-----------------------------~k~Ir~~F 200 (464)
-|++|+++|.|||++|-.+|-.+ |.. +- .... ....+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 47789999999999999998773 333 10 0000 12334555
Q ss_pred HHHHHHHHhCCcEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCCCC
Q 012418 201 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 280 (464)
Q Consensus 201 ~~A~~~~~~~~P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~~L 280 (464)
..+.+.+......+|+|||+-....-.- .+. .. +++++. ....++-||+|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~-l~~-----~e----v~~~l~-------------~Rp~~~~vIlTGr~a--- 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDY-LPL-----EE----VISALN-------------ARPGHQTVIITGRGC--- 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTS-SCH-----HH----HHHHHH-------------TSCTTCEEEEECSSC---
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCC-CCH-----HH----HHHHHH-------------hCcCCCEEEEECCCC---
Confidence 5565555567889999999954322211 111 12 223333 334566799999995
Q ss_pred chhhccCCcceEEEe
Q 012418 281 YAPLIRDGRMEKFYW 295 (464)
Q Consensus 281 DpALlRpGRfD~~i~ 295 (464)
++.|+- .-|.+-+
T Consensus 164 p~~l~e--~AD~VTe 176 (196)
T 1g5t_A 164 HRDILD--LADTVSE 176 (196)
T ss_dssp CHHHHH--HCSEEEE
T ss_pred cHHHHH--hCcceee
Confidence 777875 5666554
No 170
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.85 E-value=0.00057 Score=64.22 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=24.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|+|.||||+||+++|+.+|+.+|++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 57899999999999999999999987
No 171
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.85 E-value=0.00067 Score=62.64 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+..|.|.||+|||||++++.+++.+|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~ 32 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWH 32 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999876
No 172
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.85 E-value=0.00058 Score=62.93 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=24.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+|.||||+|||++|+.+++++|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 37899999999999999999999876
No 173
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.84 E-value=0.0008 Score=59.79 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
...++|.||||+|||+++++++..+|..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~ 35 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAA 35 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcE
Confidence 4678999999999999999999998865
No 174
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.84 E-value=0.00078 Score=63.30 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.+..|+|.|+||+|||++|+.+|+++++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~ 43 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 34679999999999999999999999976
No 175
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.83 E-value=0.0019 Score=67.18 Aligned_cols=30 Identities=7% Similarity=-0.005 Sum_probs=26.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|+++..-++|.|+||+|||+||..+|..+
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 478888899999999999999999998864
No 176
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.83 E-value=0.003 Score=62.91 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+.|..++|.||+|+|||+++..+|..+
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 3567899999999999999999999876
No 177
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.82 E-value=0.00054 Score=61.08 Aligned_cols=24 Identities=29% Similarity=0.098 Sum_probs=22.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.|+|.|+||+|||++|+.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987
No 178
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.78 E-value=0.00063 Score=63.28 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=25.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..|+|.|+||+|||++|+.+|..+|++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCce
Confidence 468899999999999999999999876
No 179
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.78 E-value=0.00069 Score=61.74 Aligned_cols=30 Identities=27% Similarity=0.193 Sum_probs=26.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..++.|+|.|+||+|||++|+.+++.++..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 456789999999999999999999987653
No 180
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.78 E-value=0.00091 Score=58.79 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=24.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|+|.|+||+|||++|+.+++.++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~ 27 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP 27 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999999986
No 181
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.77 E-value=0.0013 Score=59.00 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM---GIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el---g~~ 186 (464)
-|.|.|+||||||++|+.+++.+ |++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~ 30 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKK 30 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 47899999999999999999998 877
No 182
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.75 E-value=0.00075 Score=61.54 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
+.|+.|+|.|+||+|||++|+.+++.++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999998754
No 183
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.70 E-value=0.001 Score=63.96 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=24.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.++|.||||+|||++|+.+|++++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~ 28 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWP 28 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCe
Confidence 58899999999999999999999876
No 184
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.67 E-value=0.0021 Score=66.65 Aligned_cols=30 Identities=10% Similarity=-0.089 Sum_probs=26.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|+++..-++|.|+||+|||++|..+|..+
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578888899999999999999999998764
No 185
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.63 E-value=0.0013 Score=60.28 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..+..+.|.||+|||||+++++++..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999874
No 186
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.62 E-value=0.0012 Score=61.11 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=24.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+|.||||+|||++|+.+++.+|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 37899999999999999999999876
No 187
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.62 E-value=0.0013 Score=59.27 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|.|.|+||+|||++++.+++.++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCc
Confidence 47899999999999999999999874
No 188
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.62 E-value=0.0014 Score=58.58 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM---GIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el---g~~ 186 (464)
.|+|.|+||+|||++|+.+++.+ |++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~ 30 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYF 30 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 57899999999999999999998 776
No 189
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.58 E-value=0.0012 Score=68.26 Aligned_cols=30 Identities=23% Similarity=0.175 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..|..|+|.|+||+|||++|+.++..+++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~ 285 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYV 285 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcE
Confidence 456889999999999999999999999876
No 190
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.57 E-value=0.0047 Score=50.29 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=30.8
Q ss_pred CHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHHH
Q 012418 298 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFF 335 (464)
Q Consensus 298 ~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~~ 335 (464)
+.++|.+|++.++++ .+++.+.|++.|+||||+||..+
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l 43 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSV 43 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHH
Confidence 457899998877654 46778899999999999999743
No 191
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.52 E-value=0.0016 Score=62.65 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|..+.|.||||||||++++.+|+.+|+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~ 36 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGAR 36 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999986
No 192
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.52 E-value=0.0019 Score=57.75 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el---g~~ 186 (464)
..+..|.|.|++|+|||++++.++..+ |++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~ 35 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIP 35 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCc
Confidence 345678999999999999999999987 655
No 193
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.51 E-value=0.0019 Score=58.49 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=24.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|.|.|++|+|||++++.+|+.+|++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 78999999999999999999999987
No 194
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.51 E-value=0.0014 Score=62.47 Aligned_cols=30 Identities=33% Similarity=0.688 Sum_probs=26.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..|..|.|.|+||+|||++|+.++..+|.+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 456789999999999999999999999864
No 195
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.50 E-value=0.0016 Score=58.92 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+..+..+.|.||+|+|||++++.++..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456789999999999999999999876
No 196
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0014 Score=59.92 Aligned_cols=26 Identities=35% Similarity=0.659 Sum_probs=23.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..+.|.||+|||||++++.++. +|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~ 28 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVP 28 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 5688999999999999999988 8876
No 197
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.50 E-value=0.0072 Score=59.87 Aligned_cols=30 Identities=17% Similarity=-0.069 Sum_probs=26.9
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|+++..-++|.|+||+|||++|..+|..+
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578888899999999999999999999764
No 198
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.50 E-value=0.0014 Score=59.28 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh-CCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM-GIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el-g~~ 186 (464)
.++.|.|.|+||+|||++++.+++.+ |++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~ 32 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANT 32 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCc
Confidence 46789999999999999999999998 454
No 199
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.48 E-value=0.00097 Score=67.86 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.++|.||.|+|||++.++++..+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68899999999999999999886
No 200
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.45 E-value=0.0017 Score=60.82 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=24.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-|+|.||||+|||++|+.+++.+|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~ 27 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLA 27 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 47899999999999999999999875
No 201
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.42 E-value=0.0022 Score=57.67 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..+..|+|.|+||+|||++++.++..++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3467889999999999999999999875
No 202
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.42 E-value=0.0018 Score=59.47 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=25.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+..++.++|.||||+|||++++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45567899999999999999999999884
No 203
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.41 E-value=0.00093 Score=63.83 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..++++||||+|||+++..++..+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 577889999999999998888775
No 204
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.40 E-value=0.002 Score=58.11 Aligned_cols=28 Identities=39% Similarity=0.572 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|..|.|.|++|||||++++.+++. |+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~ 34 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYP 34 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCE
Confidence 4678999999999999999999998 765
No 205
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.39 E-value=0.0016 Score=59.21 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=23.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|.|.||+|||||++++.+++ +|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~ 27 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAY 27 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCE
Confidence 588999999999999999999 8876
No 206
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.38 E-value=0.0034 Score=57.84 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.+.+..+.|.||+|+|||+|+++|+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45567899999999999999999999875
No 207
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.32 E-value=0.0022 Score=59.16 Aligned_cols=28 Identities=36% Similarity=0.567 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|..|.|.|++|+|||++++.++. +|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~ 30 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGIN 30 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCE
Confidence 467899999999999999999988 8775
No 208
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.28 E-value=0.0018 Score=59.27 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=26.2
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.++.+..++|.||||+|||++++.+++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345667789999999999999999999876
No 209
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.27 E-value=0.0063 Score=63.84 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|..|++.||||+|||+++..+|..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999875
No 210
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.25 E-value=0.0029 Score=57.27 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.....+.|.||+|+|||+|+++++..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345678999999999999999999875
No 211
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.24 E-value=0.0025 Score=58.82 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+..+..|+|.|+||+|||++++.++..++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567899999999999999999998775
No 212
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.23 E-value=0.0047 Score=63.16 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=23.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
..++|+||||+|||++++++|+.+++
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 46889999999999999999998764
No 213
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.22 E-value=0.0015 Score=63.34 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...++|.||.|+|||++.++++..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4555678999999999999999999875
No 214
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.20 E-value=0.0031 Score=60.29 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
...|.|.||+|||||++++.+|+.+|+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3578999999999999999999999986
No 215
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.18 E-value=0.0065 Score=55.70 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+.+..+.|.||+|+|||++++.++..+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566789999999999999999999875
No 216
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.17 E-value=0.012 Score=62.28 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHH
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELV 179 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaI 179 (464)
+++....++|.||+|||||+|++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 5677788999999999999999994
No 217
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.17 E-value=0.0033 Score=59.12 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=27.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
...+..|.|.|++|||||++++.++..+|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~ 43 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFT 43 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 3455689999999999999999999999976
No 218
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.17 E-value=0.013 Score=61.50 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
|+.+...++|.|+||+|||+||..+|..+-
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 677778899999999999999999998764
No 219
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.15 E-value=0.0067 Score=60.94 Aligned_cols=40 Identities=38% Similarity=0.503 Sum_probs=32.4
Q ss_pred HHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 146 i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
+...++.....+.|..+.|.||+|||||+++++++..++.
T Consensus 79 ~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 79 ATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3445555555677899999999999999999999988763
No 220
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.14 E-value=0.0031 Score=57.61 Aligned_cols=28 Identities=29% Similarity=0.609 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+.+..+.|.||+|+|||+|++.++..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999999887
No 221
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.14 E-value=0.0028 Score=58.58 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+.+..+.|.||+|+|||++++.++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3457899999999999999999999874
No 222
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0033 Score=56.66 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..+.+.|.||+|+|||+|+++++..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999999764
No 223
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.11 E-value=0.0032 Score=56.69 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..++|.||+|+|||++++.++..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 357899999999999999999754
No 224
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.08 E-value=0.0029 Score=58.20 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|..|.|.|+||||||++++.++..+|++
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~ 30 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMI 30 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 4578999999999999999999999976
No 225
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.08 E-value=0.056 Score=58.41 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=45.7
Q ss_pred EEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC--CCchhhccCCcc
Q 012418 213 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRM 290 (464)
Q Consensus 213 ~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~--~LDpALlRpGRf 290 (464)
.+|+|||+..+..... ..+...|.+|+. . -..-+|-+|++|.+|+ .|+..++. -|
T Consensus 345 ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar---------~---GRa~GIhLIlaTQRPs~d~I~~~Ira--n~ 401 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG---------KKVEELIARIAQ---------K---ARAAGIHLILATQRPSVDVITGLIKA--NI 401 (574)
T ss_dssp EEEEESCCTTHHHHTC---------HHHHHHHHHHHH---------H---CTTTTEEEEEEESCCCTTTSCHHHHH--TC
T ss_pred EEEEEeCHHHHhhhhh---------HHHHHHHHHHHH---------H---HhhCCeEEEEEecCcccccccHHHHh--hh
Confidence 6899999988764321 123344444443 1 2346789999999998 78877654 34
Q ss_pred eEEEe--CCCHHHHHHHH
Q 012418 291 EKFYW--APTREDRIGVC 306 (464)
Q Consensus 291 D~~i~--iP~~eeR~eIl 306 (464)
...|- +.+..+...|+
T Consensus 402 ~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 402 PTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp CEEEEECCSCHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHhc
Confidence 44444 47777776665
No 226
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.05 E-value=0.0037 Score=63.02 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.++.|+|.||+|+|||++|+.+|++++..
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~ 32 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCE 32 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 35689999999999999999999998754
No 227
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.99 E-value=0.004 Score=60.17 Aligned_cols=28 Identities=32% Similarity=0.287 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh-CCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM-GIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el-g~~ 186 (464)
|+.|+|.|+||+|||++|+.++.++ ++.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~ 30 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY 30 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcE
Confidence 5689999999999999999999974 543
No 228
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.99 E-value=0.0047 Score=58.45 Aligned_cols=31 Identities=35% Similarity=0.714 Sum_probs=26.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
++.+..+.|.||.|+|||++++.++..+|..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4556679999999999999999999988743
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.98 E-value=0.006 Score=63.78 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|..++|.||+|+|||+++..+|..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999765
No 230
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.97 E-value=0.0054 Score=64.87 Aligned_cols=63 Identities=22% Similarity=0.424 Sum_probs=42.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC-----C--CCCCChHHHHHHHHH--------------------------------
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGI-----N--GNAGEPAKLIRQRYR-------------------------------- 201 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~-----~--~~~Ge~~k~Ir~~F~-------------------------------- 201 (464)
-++|+||+|+|||+|+..++..... . ..+|+....++++++
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ 232 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTG 232 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHH
Confidence 5889999999999999999876432 1 334665544444433
Q ss_pred -HHHHHHH--hCCcEEEEecccccc
Q 012418 202 -EAADIIK--KGKMCCLFINDLDAG 223 (464)
Q Consensus 202 -~A~~~~~--~~~P~ILfIDEIDal 223 (464)
..++..+ +++-.+||+|++-..
T Consensus 233 ltiAEyFrd~~G~~VLl~~D~itR~ 257 (473)
T 1sky_E 233 LTMAEYFRDEQGQDGLLFIDNIFRF 257 (473)
T ss_dssp HHHHHHHHHHSCCEEEEEEECTHHH
T ss_pred HHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1123333 478899999998654
No 231
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.96 E-value=0.0035 Score=56.71 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
|+.+.|.||+|+|||+|+++++..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998864
No 232
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.96 E-value=0.0036 Score=57.95 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=25.3
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|++....++|+||||+|||+||..+|..+
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 367777889999999999999998887653
No 233
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.96 E-value=0.007 Score=57.37 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=22.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.++|.||+|+|||.++.+++.+++..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~ 135 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTP 135 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 48899999999999999999887654
No 234
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.94 E-value=0.0042 Score=60.56 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.|..|+|.|+||+|||++|+.++ ++|++
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~ 101 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAY 101 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCc
Confidence 46789999999999999999999 68876
No 235
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.91 E-value=0.021 Score=58.50 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+....+.|.||.|+|||+|.++|+.-
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 34457899999999999999999975
No 236
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.89 E-value=0.0048 Score=63.54 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+....+.|.||.|||||+|.++||.-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 334578899999999999999999764
No 237
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.88 E-value=0.0041 Score=60.13 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
...|.|.||+|+|||++++.+|..+|++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYT 75 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 3468999999999999999999999986
No 238
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.87 E-value=0.0025 Score=64.96 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...++|.||+|+|||++.++++..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4455678999999999999999999875
No 239
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.86 E-value=0.0085 Score=59.07 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=29.9
Q ss_pred HHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 147 ~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.+.++.......+..+.|.||+|+|||+|+++++..++
T Consensus 68 ~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 68 LEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred HHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455444456678899999999999999999999886
No 240
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.84 E-value=0.0047 Score=57.27 Aligned_cols=27 Identities=37% Similarity=0.732 Sum_probs=25.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..|.|.|++|||||++++.+++.+|++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~ 39 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAH 39 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 468899999999999999999998987
No 241
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.82 E-value=0.0066 Score=57.48 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+..++-|.|.||||+|||++++.+++.++
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 44567888999999999999999999986
No 242
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.82 E-value=0.0062 Score=59.26 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+....+.|.||.|+|||+|.++|+..+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344578999999999999999999753
No 243
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.81 E-value=0.006 Score=62.30 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+....+.|.||.|||||+|.++||.-
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcC
Confidence 33447889999999999999999975
No 244
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.81 E-value=0.012 Score=57.94 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..+.|..|.|.||+|+|||+||+.++..++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456678999999999999999999998775
No 245
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.79 E-value=0.005 Score=62.30 Aligned_cols=30 Identities=10% Similarity=-0.046 Sum_probs=26.5
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|+.+.--++|.|+||+|||+||..+|..+
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 378888889999999999999999998774
No 246
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.75 E-value=0.0061 Score=58.61 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=24.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-+.|.||||+|||++|+.+++.+|++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~ 35 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIP 35 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCC
Confidence 57789999999999999999999987
No 247
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.74 E-value=0.0038 Score=56.83 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.|.|.||+|+|||++++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999885
No 248
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.66 E-value=0.0055 Score=59.04 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=25.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
|++....++|+||||+|||+|+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 66666789999999999999999999765
No 249
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.64 E-value=0.0034 Score=62.97 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=39.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC----------C-----------CCCChHHHHHHHHHHHHHHHHhCCcEEEEec
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN----------G-----------NAGEPAKLIRQRYREAADIIKKGKMCCLFIN 218 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~----------~-----------~~Ge~~k~Ir~~F~~A~~~~~~~~P~ILfID 218 (464)
..++|.||.|+|||+|.++++..+.-. . ++.......+..+.+| -...|.+|++|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~a----L~~~p~ilild 247 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSC----LRMRPDRIILG 247 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHH----TTSCCSEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHH----hhhCCCEEEEc
Confidence 478999999999999999999886432 0 1100011122333333 46789999999
Q ss_pred cccc
Q 012418 219 DLDA 222 (464)
Q Consensus 219 EIDa 222 (464)
|.-+
T Consensus 248 E~~~ 251 (330)
T 2pt7_A 248 ELRS 251 (330)
T ss_dssp CCCS
T ss_pred CCCh
Confidence 9853
No 250
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.62 E-value=0.032 Score=57.91 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=46.3
Q ss_pred cEEEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEE---------eC---CCCC
Q 012418 212 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT---------GN---DFST 279 (464)
Q Consensus 212 P~ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaT---------TN---~~~~ 279 (464)
|.|+||||+|.+.. ....+|+..+. +....++|++| || .+..
T Consensus 296 ~~VliIDEa~~l~~-------------~a~~aLlk~lE-------------e~~~~~~il~tn~~~~~i~~~~~~~~~~~ 349 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI-------------ECFTYLHRALE-------------SSIAPIVIFASNRGNCVIRGTEDITSPHG 349 (456)
T ss_dssp ECEEEEESGGGCBH-------------HHHHHHHHHTT-------------STTCCEEEEEECCSEEECBTTSSCEEETT
T ss_pred ceEEEEechhhcCH-------------HHHHHHHHHhh-------------ccCCCEEEEecCCcccccccccccccccc
Confidence 46999999998731 22334555554 33333444444 22 2778
Q ss_pred CchhhccCCcceEEEeC--CCHHHHHHHHHhhcC
Q 012418 280 LYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 311 (464)
Q Consensus 280 LDpALlRpGRfD~~i~i--P~~eeR~eIl~~~~~ 311 (464)
|+|.++. ||-.+ .+ |+.++..+|++....
T Consensus 350 l~~~i~s--R~~~~-~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 350 IPLDLLD--RVMII-RTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp CCHHHHT--TEEEE-ECCCCCHHHHHHHHHHHHH
T ss_pred CChhHHh--hccee-eCCCCCHHHHHHHHHHHHH
Confidence 9999987 77764 54 799999999876653
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.62 E-value=0.0061 Score=56.02 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+++.+.|.||+|+|||+|++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999998763
No 252
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.61 E-value=0.021 Score=59.50 Aligned_cols=30 Identities=17% Similarity=-0.069 Sum_probs=26.5
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|+.+..-++|.|+||+|||++|--+|..+
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 378888889999999999999999988764
No 253
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.61 E-value=0.0072 Score=55.58 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=23.5
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.++....+.|.||+|+|||+|+++|+..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34555679999999999999999999876
No 254
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.59 E-value=0.029 Score=66.06 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++..-+.|.||.|+|||+|++++..++
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4555678999999999999999999875
No 255
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.59 E-value=0.0077 Score=58.31 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=26.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 154 ~gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.++++...++|.||||+|||+|++.+|..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467777889999999999999999999875
No 256
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.56 E-value=0.055 Score=61.57 Aligned_cols=26 Identities=23% Similarity=0.054 Sum_probs=22.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHH
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
+.....++|.||.|+|||++.+.|+.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHH
Confidence 34456899999999999999999874
No 257
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.53 E-value=0.017 Score=56.89 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+..+.|.|++|+|||+++..+|..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788899999999999999999875
No 258
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.43 E-value=0.0045 Score=49.43 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=31.2
Q ss_pred CHHHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 298 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 298 ~~eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
+.++|.+|++.++.+ .+++.+.|++.|+||||+||..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~ 42 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 42 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 678999998877754 4677889999999999999974
No 259
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.35 E-value=0.0086 Score=55.95 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
++....+.|.||+|+|||+|+++++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455678999999999999999999976
No 260
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.31 E-value=0.012 Score=62.71 Aligned_cols=53 Identities=11% Similarity=-0.080 Sum_probs=38.3
Q ss_pred cCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 132 LYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 132 ~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
..+|+.|+-..+..+++.++.. ..+.+..|.|.|++|||||++++++|+.|+.
T Consensus 369 ~~~P~~f~rpeV~~vLr~~~~~-~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 369 GEIPEWFSYPEVVKILRESNPP-RPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCCCTTTSCHHHHHHHHHHSCC-GGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCCccccChhhHHHHHHhccc-ccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3455666655566666665531 1234467889999999999999999999985
No 261
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.29 E-value=0.012 Score=54.65 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=25.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..|.|.||+|||||++++.+|+.||++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~ 33 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIP 33 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 478999999999999999999999998
No 262
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.22 E-value=0.013 Score=58.32 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=26.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
++.+..+.|.||+|+|||+|+++|+..+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 567788999999999999999999998753
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.20 E-value=0.014 Score=52.44 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+++...+.|.||.|+|||+|.++++..+.
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 44556799999999999999999999983
No 264
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.14 E-value=0.082 Score=60.22 Aligned_cols=22 Identities=23% Similarity=0.001 Sum_probs=19.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
..++|.||.|+|||++.+.|+.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999953
No 265
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.11 E-value=0.0064 Score=56.73 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=17.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHH-HHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVF-AKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA-~el 183 (464)
++....+.|.||+|+|||+++++++ ..+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3445678999999999999999999 765
No 266
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.08 E-value=0.084 Score=56.27 Aligned_cols=74 Identities=5% Similarity=0.099 Sum_probs=44.1
Q ss_pred CcE-EEEeccccccccCCCCCCccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEEeCCCC--CCchhhccC
Q 012418 211 KMC-CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRD 287 (464)
Q Consensus 211 ~P~-ILfIDEIDal~~~r~~~~~~~~~~~~v~~~L~~llD~~~~v~ldG~~~~~~~~~V~VIaTTN~~~--~LDpALlRp 287 (464)
.|. +|+|||...+.... ...+...+..|.. . -..-++.+|++|.+++ .|+..++.
T Consensus 296 lP~ivlvIDE~~~ll~~~---------~~~~~~~l~~Lar---------~---gRa~GI~LIlaTQrp~~dvl~~~i~~- 353 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV---------GKKVEELIARLAQ---------K---ARAAGIHLVLATQRPSVDVITGLIKA- 353 (512)
T ss_dssp CCEEEEEEETHHHHHHHH---------HHHHHHHHHHHHH---------H---CGGGTEEEEEEESCCCTTTSCHHHHH-
T ss_pred CCcEEEEEeCHHHHHhhh---------hHHHHHHHHHHHH---------H---hhhCCcEEEEEecCCccccccHHHHh-
Confidence 354 89999997664321 1223344444433 1 1224788999999998 57766554
Q ss_pred CcceEEEe--CCCHHHHHHHHH
Q 012418 288 GRMEKFYW--APTREDRIGVCS 307 (464)
Q Consensus 288 GRfD~~i~--iP~~eeR~eIl~ 307 (464)
-|...+- +.+..+...|+.
T Consensus 354 -n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 354 -NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp -HCCEEEEECCSSHHHHHHHHS
T ss_pred -hcCCeEEEEcCCHHHHHHhcC
Confidence 4444344 478888877753
No 267
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.04 E-value=0.016 Score=57.77 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+++...+.|+||+|+|||+|+++|+..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45666789999999999999999999987
No 268
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.03 E-value=0.01 Score=60.19 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
+.++.|+|.||+|+|||+|+..+|++++.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 34568999999999999999999999874
No 269
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.02 E-value=0.024 Score=58.91 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..-++|+||+|||||+|+..|++.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3478999999999999999999875
No 270
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.01 E-value=0.015 Score=58.55 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
+.|+.++|.||+|+|||+||..+|++++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCC
Confidence 45678999999999999999999999864
No 271
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.93 E-value=0.015 Score=54.72 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
|+.|.|.|++|+|||++++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999999983
No 272
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.88 E-value=0.017 Score=54.09 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.++.+.|.||+|+|||+|+++++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346788999999999999999998864
No 273
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.86 E-value=0.013 Score=63.49 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=16.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~e 182 (464)
-.||+||||||||+.+-.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999755444444
No 274
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.85 E-value=0.036 Score=54.83 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++.+..++|.||.|+|||++++.+|..+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999864
No 275
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.81 E-value=0.017 Score=58.49 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
++.|+|.||+|+|||++|+.+|..++.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCC
Confidence 467899999999999999999999874
No 276
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.80 E-value=0.014 Score=60.48 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=22.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.++|.||||||||+++.+++..+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999873
No 277
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.75 E-value=0.018 Score=53.21 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+.|.||+|+|||+|.+.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999987
No 278
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.70 E-value=0.019 Score=54.12 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++....+.|.||.|+|||+|.++++..+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45567889999999999999999999875
No 279
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.68 E-value=0.024 Score=60.79 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...+.|.||.|+|||+|.++++..+
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3445678999999999999999999764
No 280
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.67 E-value=0.019 Score=54.48 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
...|.|.|++|||||++++.+|+.+|++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~ 41 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIH 41 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCc
Confidence 4589999999999999999999999998
No 281
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.66 E-value=0.017 Score=61.54 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..|..|+|.|.||+|||++|+.+|..++
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999999984
No 282
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.64 E-value=0.023 Score=51.87 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+....+.|.||+|+|||+|++.++..+
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 345678999999999999999999875
No 283
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.62 E-value=0.029 Score=60.52 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...+.|.||.|+|||+|.++++...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4555689999999999999999999764
No 284
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.58 E-value=0.0092 Score=58.66 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.+..|.|.||+|+|||++|+.++..++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 355799999999999999999999876
No 285
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.54 E-value=0.042 Score=64.72 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++..-+.|.||.|+|||+|++++..-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 3445678999999999999999998753
No 286
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.49 E-value=0.038 Score=52.67 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..+-|.|.||+|+|||++++.+++.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999987
No 287
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.48 E-value=0.014 Score=55.19 Aligned_cols=26 Identities=27% Similarity=0.133 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.++++|.||+|+|||+||..++....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 47999999999999999999987643
No 288
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.46 E-value=0.076 Score=56.47 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..|+.|+|.|+||+|||+++..+|..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999999765
No 289
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.40 E-value=0.12 Score=57.85 Aligned_cols=25 Identities=24% Similarity=-0.003 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
....++|.||.|+|||++.+.|+.-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3467999999999999999999965
No 290
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.39 E-value=0.022 Score=52.66 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 012418 162 LGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~el 183 (464)
|+|.||+|+|||+|++.+..+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998885
No 291
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.36 E-value=0.022 Score=57.38 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
++.|+|.||+|+|||+||..+|..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 457889999999999999999998763
No 292
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.35 E-value=0.056 Score=55.04 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++.+..++|.||.|+|||++++.+|..+.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 45678899999999999999999999864
No 293
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.34 E-value=0.032 Score=55.36 Aligned_cols=28 Identities=14% Similarity=0.008 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
.+..+.|.||.|+|||++++.+|..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4678999999999999999999988743
No 294
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.32 E-value=0.026 Score=58.57 Aligned_cols=28 Identities=25% Similarity=0.164 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
+++.|+|.||+|+|||+||..+|..++.
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCCC
Confidence 3567889999999999999999999763
No 295
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.30 E-value=0.024 Score=61.01 Aligned_cols=26 Identities=27% Similarity=0.297 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
...++|+||||||||+++.+++..+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999998753
No 296
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.28 E-value=0.045 Score=54.03 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+..+++.|++|+|||+++..+|..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7788999999999999999999876
No 297
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.19 E-value=0.03 Score=56.20 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+.|..++|.||+|+|||++++.+|..+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998763
No 298
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.17 E-value=0.032 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+.+.|.|++|+|||+++..++.++
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999999886
No 299
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.16 E-value=0.033 Score=50.87 Aligned_cols=24 Identities=17% Similarity=-0.015 Sum_probs=19.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.++++||||+|||+++.-++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999996666553
No 300
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.15 E-value=0.093 Score=52.62 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..+..|+|.|+||+|||+++..++..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999886
No 301
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.13 E-value=0.012 Score=56.06 Aligned_cols=27 Identities=19% Similarity=0.072 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.++-|.|.|++|+|||++++.+++.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456789999999999999999999988
No 302
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.10 E-value=0.033 Score=49.52 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
..+|+||.|+|||++.+||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6789999999999999999998764
No 303
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.05 E-value=0.086 Score=54.88 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.|..+++.||+|+|||+++..+|..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999998863
No 304
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.04 E-value=0.034 Score=54.81 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..+..++|.||+|+|||+++..+|..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998763
No 305
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.03 E-value=0.036 Score=52.04 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++-|.|.||+|+|||++++.+++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46788899999999999999999885
No 306
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.03 E-value=0.056 Score=51.10 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=23.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
-.|.|+|.+|||||++++.++. +|++
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~ 35 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGAS 35 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 4789999999999999999987 9987
No 307
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.03 E-value=0.078 Score=56.45 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=25.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++.+..++|.||.|+|||+|+++||..+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 45678899999999999999999998863
No 308
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.01 E-value=0.041 Score=52.01 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.++-|.|.|++|+|||++++.+++.++.+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 35678899999999999999999999863
No 309
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=94.01 E-value=0.0093 Score=47.70 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcCC----CCCChhHHHHHhcCCChhhHHH
Q 012418 300 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDF 334 (464)
Q Consensus 300 eeR~eIl~~~~~~----~~v~~~~la~lt~gfsgadLd~ 334 (464)
++|.+|++.++.+ .+++++.|++.|+||||+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~ 39 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA 39 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 4688887766643 4678889999999999999974
No 310
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.94 E-value=0.028 Score=58.54 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..|.-|+|.|.||+|||++++.++..++
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999999875
No 311
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=93.93 E-value=0.054 Score=62.70 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.+.+.|+||+|.|||+||+.+++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 578999999999999999999864
No 312
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.93 E-value=0.12 Score=53.77 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.|+.|++.|++|+|||+++-.+|..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999776
No 313
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.92 E-value=0.04 Score=59.06 Aligned_cols=50 Identities=18% Similarity=0.066 Sum_probs=33.7
Q ss_pred chhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 135 APAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 135 ~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
++.|+-..+..+++.++... .+.+..|+|.|+||+|||++|+.++..++.
T Consensus 349 p~~~~r~eV~~~lr~~~~~~-~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 349 PEWFTRPEVAEILAETYVPK-HKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CTTTSCHHHHHHHHHHSCCG-GGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHhhccc-cccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 44443233445555554211 234567999999999999999999998764
No 314
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.91 E-value=0.015 Score=61.84 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
...+++|.||+|+|||++.++++..+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345799999999999999999998864
No 315
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.82 E-value=0.041 Score=60.14 Aligned_cols=29 Identities=21% Similarity=0.150 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM---GIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el---g~~ 186 (464)
.+..|+|.|+||+|||++|++++..+ |.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~ 82 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIP 82 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCe
Confidence 46789999999999999999999998 765
No 316
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.77 E-value=0.032 Score=60.44 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..+|+||||||||+++..++..+-
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999998888877653
No 317
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.70 E-value=0.043 Score=52.55 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.++-|.|.|++|+|||++++.++..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999999874
No 318
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.67 E-value=0.046 Score=54.58 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+.|..++|.||+|+|||+++..+|..+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999865
No 319
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.57 E-value=0.036 Score=53.00 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
++. ..+.|.||.|+|||+|.++++.-+
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 455 688999999999999999998754
No 320
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.47 E-value=0.034 Score=52.87 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
++....+.|.||.|+|||+|.++|+..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445689999999999999999999764
No 321
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.43 E-value=0.063 Score=57.85 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..+..|+|.|+||+|||++|++++..++
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999999886
No 322
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.39 E-value=0.03 Score=52.81 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+....+.|.||.|+|||+|.++|+.-+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445788999999999999999987543
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.36 E-value=0.037 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+.+.|.||+|+|||+|++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999998863
No 324
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.32 E-value=0.059 Score=51.72 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
...|++.|+||+|||+++-.+|.++
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3568999999999999999999886
No 325
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.29 E-value=0.046 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-++|.||+|+|||+|.++++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999999975
No 326
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.23 E-value=0.04 Score=52.38 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
.....+.|.||.|+|||+|.++|+..+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3445789999999999999999987554
No 327
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.22 E-value=0.039 Score=59.33 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++.+..+.|.|++|||||+|++++|..++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 44556789999999999999999999985
No 328
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.19 E-value=0.047 Score=49.07 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.-++|.||+|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998753
No 329
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.19 E-value=0.064 Score=51.00 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
..++-|.|.|++|+|||++++.+++.++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34567888899999999999999998754
No 330
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.19 E-value=0.04 Score=53.28 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+....+.|.||.|+|||+|.++|+.-+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4445789999999999999999987654
No 331
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.12 E-value=0.047 Score=54.81 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..-+.|.||+|||||+|+++++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678999999999999999999987654
No 332
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.11 E-value=0.037 Score=51.76 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
....+.|.||.|+|||+|.++++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999985
No 333
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.07 E-value=0.082 Score=58.96 Aligned_cols=23 Identities=22% Similarity=-0.013 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..++|.||.|+|||++.+.|+.-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 47899999999999999999865
No 334
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.04 E-value=0.055 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
+|+||.|++|+|||++|.++..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 6999999999999999998876
No 335
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.02 E-value=0.056 Score=45.93 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~e 182 (464)
-|++.|++|+|||+|+..+++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 336
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.02 E-value=0.046 Score=57.79 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=25.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 155 gi~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
++.....++|.||||+|||+|++.++..+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 66777789999999999999999999875
No 337
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.99 E-value=0.045 Score=52.16 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...+.|.||.|+|||+|.++|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445678999999999999999998754
No 338
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.95 E-value=0.053 Score=52.53 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
++....+.|.||.|+|||+|.++|+..+
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444578999999999999999999853
No 339
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.94 E-value=0.055 Score=58.49 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+-++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999988887665
No 340
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.86 E-value=0.061 Score=45.89 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-|+|.|++|+|||+|+.++...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999874
No 341
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.80 E-value=0.074 Score=50.01 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+-|.|.|++|+|||++++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999987
No 342
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.79 E-value=0.049 Score=52.55 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++....+.|.||.|+|||+|.++|+..+.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34456799999999999999999997653
No 343
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.78 E-value=0.049 Score=52.93 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++....+.|.||.|+|||+|.++|+..+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34445789999999999999999988654
No 344
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.78 E-value=0.076 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.-|+|.|++|+|||+|..+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999999864
No 345
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.77 E-value=0.05 Score=52.07 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+....+.|.||.|+|||+|.++|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34457899999999999999999985
No 346
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.75 E-value=0.063 Score=45.37 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~e 182 (464)
-|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999875
No 347
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.74 E-value=0.05 Score=52.81 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++....+.|.||.|+|||+|.++|+..+.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34445789999999999999999987653
No 348
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.74 E-value=0.14 Score=53.32 Aligned_cols=23 Identities=13% Similarity=-0.083 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el 183 (464)
-++|.||||+|||.|+..||+..
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHH
Confidence 57899999999999999999864
No 349
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.73 E-value=0.043 Score=52.76 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+....+.|.||.|+|||+|.++|+.-+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445789999999999999999987653
No 350
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.72 E-value=0.12 Score=60.78 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...+.|.||.|+|||+|+++++...
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455688999999999999999998764
No 351
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.71 E-value=0.065 Score=57.62 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+++...+.|.||.|+|||+|.++++..+
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3455688999999999999999999764
No 352
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.68 E-value=0.066 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|+||+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 353
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.60 E-value=0.088 Score=49.59 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=26.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
-.|++.|+|+|.||+||++.|+.+.+.+|.
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 357789999999999999999999888864
No 354
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.60 E-value=0.061 Score=54.73 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+....+.|.||.|||||+|.++||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 344578899999999999999999764
No 355
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.59 E-value=0.085 Score=46.62 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..+.-|+|.|++|+|||+|..+++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44467899999999999999999875
No 356
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.59 E-value=0.046 Score=52.34 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+....+.|.||.|+|||+|.++|+..+.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445789999999999999999988654
No 357
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.59 E-value=0.053 Score=54.92 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+....+.|.||.|||||+|.++||.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 344578899999999999999999764
No 358
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.57 E-value=0.062 Score=54.77 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+....+.|.||.|||||+|.++||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 334578899999999999999999764
No 359
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.56 E-value=0.047 Score=51.94 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+....+.|.||.|+|||+|.++|+..+.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3345788999999999999999987653
No 360
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.56 E-value=0.085 Score=52.81 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+.....+.|.||||+|||+|.++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4455688999999999999999999765
No 361
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.55 E-value=0.047 Score=51.57 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+....+.|.||.|+|||+|.++|+..+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3445789999999999999999998653
No 362
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.54 E-value=0.05 Score=56.66 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.|..|+|.|+||+|||+++..+|..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999875
No 363
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.53 E-value=0.072 Score=45.20 Aligned_cols=23 Identities=22% Similarity=0.110 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|++.|++|+|||+|..++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999999875
No 364
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.51 E-value=0.072 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999865
No 365
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.51 E-value=0.093 Score=44.96 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.+.-|+|.|++|+|||+|..++...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999763
No 366
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.48 E-value=0.063 Score=60.13 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..+|+||||||||+++..++..+-
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999998888877753
No 367
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.45 E-value=0.065 Score=54.80 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+....+.|.||.|||||+|.++||.-+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344578899999999999999999764
No 368
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.39 E-value=0.06 Score=52.08 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+....+.|.||.|+|||+|.++|+.-+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4445789999999999999999987653
No 369
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.38 E-value=0.091 Score=47.77 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
...++|.|++|+|||+|+..++..+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 357889999999999999999998743
No 370
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.38 E-value=0.06 Score=52.00 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
++....+.|.||.|+|||+|.++|+..+.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34445789999999999999999987653
No 371
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.36 E-value=0.051 Score=53.16 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+....+.|.||.|+|||+|.++|+.-+.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3345789999999999999999987654
No 372
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.32 E-value=0.078 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.-|+|.|++|+|||+|..++.+.-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998753
No 373
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.32 E-value=0.076 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999999853
No 374
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.31 E-value=0.2 Score=57.56 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVF 180 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA 180 (464)
...++|.||.|+|||++.+.|+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4789999999999999999994
No 375
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.31 E-value=0.078 Score=45.87 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 376
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.28 E-value=0.047 Score=51.41 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
....+.|.||.|+|||+|.++++..+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334688999999999999999987643
No 377
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=92.28 E-value=0.25 Score=50.15 Aligned_cols=75 Identities=17% Similarity=0.280 Sum_probs=49.6
Q ss_pred cccccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCCCCChHHHHHH
Q 012418 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQ 198 (464)
Q Consensus 119 ~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~~Ge~~k~Ir~ 198 (464)
..+.|+||.+.+...--.++.+..+..++...+. |. .-.|+-||..|+|||+.. +|-....|-..+.+++
T Consensus 70 ~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~--G~--n~tifAYGqTGSGKTyTm------~G~~~~~Giipr~~~~ 139 (355)
T 3lre_A 70 KDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLN--GY--NCTVLAYGATGAGKTHTM------LGSADEPGVMYLTMLH 139 (355)
T ss_dssp CCEEEECSEEECTTCCHHHHHHTTHHHHHHHHTT--TC--CEEEEEECCTTSSHHHHH------TBCSSSBCHHHHHHHH
T ss_pred CCceEEeceEECCCCChHHHHHHHHHHHHHHHhC--CC--ceEEEEeCCCCCCceeee------ccCCCCCCeeehhhhH
Confidence 3456888888775433344444444455555443 43 347899999999999765 3555556777788888
Q ss_pred HHHHH
Q 012418 199 RYREA 203 (464)
Q Consensus 199 ~F~~A 203 (464)
+|...
T Consensus 140 lf~~i 144 (355)
T 3lre_A 140 LYKCM 144 (355)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88876
No 378
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.27 E-value=0.054 Score=54.92 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+....+.|.||.|||||+|.++||.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578899999999999999999753
No 379
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.25 E-value=0.061 Score=47.68 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~ 181 (464)
-|+|.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
No 380
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.24 E-value=0.062 Score=54.65 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
....+.|.||.|||||+|.++||.-+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34478899999999999999999764
No 381
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.22 E-value=0.082 Score=45.29 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.-|+|.|++|+|||+|..++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999864
No 382
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.22 E-value=0.079 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKMGI 185 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~elg~ 185 (464)
.+.|.||+|+|||+|.+++++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998643
No 383
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.20 E-value=0.077 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.-|+|.|+||+|||+|..++...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998754
No 384
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.19 E-value=0.18 Score=46.83 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+-|.|-|+.|+|||++++.+++.|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4577889999999999999999984
No 385
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.19 E-value=0.056 Score=50.50 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.+.+..+.|.||.|+|||++++.++..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345677899999999999999999987
No 386
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.15 E-value=0.085 Score=44.95 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 387
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.14 E-value=0.064 Score=54.77 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
....+.|.||.|||||+|.++||.-+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34478899999999999999999753
No 388
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.12 E-value=0.057 Score=51.94 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+....+.|.||.|+|||+|.++++..+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578999999999999999998754
No 389
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.11 E-value=0.087 Score=53.20 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
.--.++|.||+|+|||+|.+.|++.+...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 33478999999999999999999997644
No 390
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.10 E-value=0.08 Score=46.05 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
.-++|.|+||+|||+|..++++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999975
No 391
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.08 E-value=0.093 Score=44.75 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~e 182 (464)
-|+|.|++|+|||+|..++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999865
No 392
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.05 E-value=0.059 Score=51.85 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
+....+.|.||.|+|||+|.++|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999998754
No 393
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.04 E-value=0.088 Score=45.51 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.-|+|.|++|+|||+|...+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999874
No 394
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.04 E-value=0.087 Score=45.96 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.-|+|.|++|+|||+|..++...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 395
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.98 E-value=0.06 Score=52.66 Aligned_cols=28 Identities=18% Similarity=0.079 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+....+.|.||.|+|||+|.++|+..+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3445789999999999999999987654
No 396
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.98 E-value=0.092 Score=44.72 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999874
No 397
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.98 E-value=0.075 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999863
No 398
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.97 E-value=0.088 Score=45.37 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 399
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.97 E-value=0.1 Score=54.02 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
..++|.||.|+|||++.++++..+.-.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 357899999999999999999998643
No 400
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.91 E-value=0.062 Score=49.68 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+|++|++|+|||++|+.++.+ +.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCC
Confidence 789999999999999999977 655
No 401
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.87 E-value=0.11 Score=45.35 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.+.-|+|.|++|+|||+|..++.+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999875
No 402
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.86 E-value=0.09 Score=45.08 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~ 181 (464)
-|+|.|+||+|||+|..++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999863
No 403
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.77 E-value=0.085 Score=54.27 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+....+.|.||.|||||+|.++|+..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 44457899999999999999999974
No 404
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.75 E-value=0.1 Score=45.08 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.+.-|+|.|++|+|||+|..++...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999999763
No 405
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.74 E-value=0.1 Score=45.02 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.-|+|.|++|+|||+|..++...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 568999999999999999998753
No 406
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.71 E-value=0.087 Score=45.03 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~ 181 (464)
-|+|.|+||+|||+|..++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998863
No 407
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.69 E-value=0.083 Score=46.36 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|.+++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999873
No 408
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.69 E-value=0.087 Score=45.59 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.-|+|.|+||+|||+|..++...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999999853
No 409
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.66 E-value=0.13 Score=46.91 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+.-++|.|++|+|||+|+..++..+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35677779999999999999998864
No 410
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.64 E-value=0.09 Score=58.84 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 012418 161 ILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.+|++||||||||+++..++..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999877776554
No 411
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.64 E-value=0.1 Score=45.26 Aligned_cols=23 Identities=22% Similarity=0.110 Sum_probs=20.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..+++..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56899999999999999999864
No 412
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.54 E-value=0.1 Score=45.00 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999999876
No 413
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.52 E-value=0.11 Score=45.36 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
.-|+|.|++|+|||+|..++.+.-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998653
No 414
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.51 E-value=0.074 Score=52.36 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
++....+.|.||.|+|||+|.++|+..+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3444578999999999999999999764
No 415
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.45 E-value=0.11 Score=45.46 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-|+|.|++|+|||+|..++.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999999865
No 416
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.45 E-value=0.11 Score=45.91 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-|+|.|++|+|||+|...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999874
No 417
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.44 E-value=0.11 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|+.+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 418
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.41 E-value=0.057 Score=48.53 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=21.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+....-++|.|++|+|||+|.++++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344457899999999999999988753
No 419
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.39 E-value=0.1 Score=45.09 Aligned_cols=23 Identities=30% Similarity=0.146 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
..-|+|.|++|+|||+|..++..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999999864
No 420
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.39 E-value=0.11 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 421
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.37 E-value=0.29 Score=45.99 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.+.-|+|.|+||+|||+|..++...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999865
No 422
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.35 E-value=0.11 Score=45.89 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-|+|.|++|+|||+|..++...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999874
No 423
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.32 E-value=0.14 Score=45.69 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
...-|+|.|++|+|||+|...+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467899999999999999999875
No 424
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.30 E-value=0.13 Score=49.55 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCC-CCCCChHH-HHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKMGIN-GNAGEPAK-LIRQRYR 201 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~elg~~-~~~Ge~~k-~Ir~~F~ 201 (464)
+.|.|+|++|||||+.|+.+...+|++ ...|.+.+ .+...|.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~~~~g 45 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWG 45 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHHHHcc
Confidence 368899999999999999999988887 33444432 2344444
No 425
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.30 E-value=0.12 Score=45.36 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|+||+|||+|.+.+.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999988764
No 426
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.28 E-value=0.15 Score=47.64 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
..+..+++.|++|+|||+++..+|..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999998875
No 427
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.26 E-value=0.11 Score=54.59 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
....++|.||.|+|||+|+++|++.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4456889999999999999999974
No 428
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.16 E-value=0.12 Score=44.83 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998864
No 429
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.12 E-value=0.094 Score=50.85 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
...+.|.||.|+|||+|.++++..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478899999999999999999876
No 430
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.09 E-value=0.13 Score=44.96 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999865
No 431
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.05 E-value=0.13 Score=44.56 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.+.-|+|.|++|+|||+|..++...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999999875
No 432
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.01 E-value=0.13 Score=45.34 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.-|+|.|++|+|||+|..++...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999875
No 433
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.93 E-value=0.16 Score=44.27 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
+.+.-|+|.|++|+|||+|...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999988863
No 434
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.88 E-value=0.13 Score=45.34 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999999864
No 435
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.88 E-value=0.11 Score=57.78 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=18.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..+++.||.|+|||++...++.+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999977766554
No 436
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.88 E-value=0.14 Score=45.45 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
..-|+|.|++|+|||+|...+.+.-
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3468999999999999999999764
No 437
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.86 E-value=0.12 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 012418 161 ILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 161 GLLL~GPPGtGKT~LAkaIA~e 182 (464)
-|+|.|++|+|||+|..++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999864
No 438
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.83 E-value=0.11 Score=45.57 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999865
No 439
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.80 E-value=0.17 Score=43.87 Aligned_cols=24 Identities=13% Similarity=-0.071 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-|+|.|++|+|||+|..++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998863
No 440
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.79 E-value=0.12 Score=44.92 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|...++..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999999874
No 441
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.74 E-value=0.14 Score=45.07 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=22.7
Q ss_pred hCCCCCCCcEEEEEcCCCccHHHHHHHHH
Q 012418 152 NLPNVKVPLILGIWGGKGQGKSFQCELVF 180 (464)
Q Consensus 152 ~~~gi~~p~GLLL~GPPGtGKT~LAkaIA 180 (464)
.+.+.+.+.-|++.|++|+|||+|..++.
T Consensus 15 ~~f~~~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 15 GLLPADRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp HTSCTTSCEEEEEEEETTSSHHHHHHHTC
T ss_pred hhccCCCceEEEEECCCCCCHHHHHHHHH
Confidence 33332456679999999999999999884
No 442
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.69 E-value=0.14 Score=44.87 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=20.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999875
No 443
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.66 E-value=0.15 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-++|.|+||+|||+|..+++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999875
No 444
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.62 E-value=0.085 Score=53.24 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
...++|.||.|+|||+|.++++..+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34789999999999999999998754
No 445
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.62 E-value=0.15 Score=45.05 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.-|+|.|++|+|||+|..++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999754
No 446
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.61 E-value=0.1 Score=51.95 Aligned_cols=29 Identities=31% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg 184 (464)
+++...+.|.||.|+|||+|.++|+..+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34556899999999999999999987653
No 447
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.58 E-value=0.15 Score=45.40 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|...+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46899999999999999998864
No 448
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.57 E-value=0.14 Score=45.49 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
...-|+|.|++|+|||+|..++...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457899999999999999999865
No 449
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.55 E-value=0.15 Score=44.45 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999853
No 450
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.49 E-value=0.18 Score=50.23 Aligned_cols=28 Identities=32% Similarity=0.274 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
......+.|.|+||+|||+++.+++..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455688899999999999999999875
No 451
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.47 E-value=0.14 Score=48.95 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|+||+|||+|..++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999765
No 452
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.43 E-value=0.15 Score=45.19 Aligned_cols=23 Identities=22% Similarity=0.110 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999999865
No 453
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.42 E-value=0.15 Score=44.94 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999999864
No 454
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.41 E-value=0.15 Score=45.34 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
...-|+|.|++|+|||+|..++...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999999875
No 455
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.38 E-value=0.2 Score=44.05 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 012418 160 LILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
...+|+||.|+|||++..||+-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999998766
No 456
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.37 E-value=0.17 Score=45.25 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|+||+|||+|..++.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999873
No 457
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=90.37 E-value=0.27 Score=50.05 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=46.1
Q ss_pred cccccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCC---CCCCChHHH
Q 012418 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN---GNAGEPAKL 195 (464)
Q Consensus 119 ~~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~---~~~Ge~~k~ 195 (464)
..+.|+||.+.++ .--.++.+..+..++...+. |. .-.|+-||..|+|||+.. +|-. ...|--.+.
T Consensus 69 ~~~~F~fD~Vf~~-~sQ~~Vy~~~~~~lv~~~l~--G~--N~tIfAYGqTGSGKTyTM------~G~~~~~~~~Giipra 137 (358)
T 2nr8_A 69 TDWSFKLDGVLHD-ASQDLVYETVAKDVVSQALD--GY--NGTIMCYGQTGAGKTYTM------MGATENYKHRGILPRA 137 (358)
T ss_dssp CEEEEECSEEEES-CCHHHHHHHHTHHHHHHHHT--TC--CEEEEEEESTTSSHHHHH------TBCSSCGGGBCHHHHH
T ss_pred cceEEECCeecCC-cCHHHHHHHHHHHHHHHHhC--CC--ceEEEEECCCCCCCceEe------cccccccccCCcHHHH
Confidence 3456777877642 22333444444555555554 33 337889999999999764 3433 125666778
Q ss_pred HHHHHHHH
Q 012418 196 IRQRYREA 203 (464)
Q Consensus 196 Ir~~F~~A 203 (464)
++++|...
T Consensus 138 ~~~lF~~i 145 (358)
T 2nr8_A 138 LQQVFRMI 145 (358)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888876
No 458
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.34 E-value=0.16 Score=45.02 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 459
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.32 E-value=0.16 Score=44.98 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.+.-|+|.|++|+|||+|...+.+.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999999864
No 460
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.29 E-value=0.16 Score=45.00 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.+.-|+|.|++|+|||+|..++...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3457899999999999999999875
No 461
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.25 E-value=0.16 Score=45.40 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+...-|+|.|+||+|||+|..++...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 33467899999999999999999864
No 462
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.25 E-value=0.16 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|...+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57889999999999999888764
No 463
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.14 E-value=0.14 Score=45.65 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999764
No 464
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.09 E-value=0.2 Score=44.85 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.+.-|+|.|++|+|||+|..++...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34567899999999999999999864
No 465
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.09 E-value=0.17 Score=45.41 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-|+|.|++|+|||+|..++...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 457899999999999999999874
No 466
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.05 E-value=0.19 Score=44.05 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.+.-|+|.|++|+|||+|..++.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45578899999999999999999864
No 467
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.95 E-value=0.19 Score=52.39 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+...-.++|.||+|||||+|.+.|++.....
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3444578999999999999999999997654
No 468
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.94 E-value=0.17 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 469
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.71 E-value=0.18 Score=45.89 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-|+|.|++|+|||+|...++..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 470
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.67 E-value=0.32 Score=51.82 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHH-HHHHHHHhCCC
Q 012418 161 ILGIWGGKGQGKSFQ-CELVFAKMGIN 186 (464)
Q Consensus 161 GLLL~GPPGtGKT~L-AkaIA~elg~~ 186 (464)
-++|+|++|+|||.| ...|++..+..
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~~~d 203 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQKGQG 203 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTTTTT
T ss_pred EEEEEcCCCCCccHHHHHHHHHhhcCC
Confidence 478999999999999 57999987544
No 471
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.66 E-value=0.23 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~el 183 (464)
...+.|.|+||+|||+|..+++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999864
No 472
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.62 E-value=0.24 Score=43.64 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
...-|+|.|++|+|||+|..++...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457899999999999999999874
No 473
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.62 E-value=0.19 Score=44.44 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 474
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.48 E-value=0.23 Score=43.69 Aligned_cols=25 Identities=16% Similarity=-0.075 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
+...-|+|.|++|+|||+|..++..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999999984
No 475
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.43 E-value=0.11 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=10.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-|+|.|++|+|||+|..++.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998753
No 476
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.42 E-value=0.24 Score=52.45 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
++. ..+.|.||.|+|||+|.++|+..+...
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 344 688999999999999999999987543
No 477
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.40 E-value=0.2 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-|+|.|++|+|||+|...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999999864
No 478
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.36 E-value=0.23 Score=44.75 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-|+|.|++|+|||+|...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999875
No 479
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.17 E-value=0.24 Score=43.78 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
...-|+|.|++|+|||+|..++.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999864
No 480
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.07 E-value=0.22 Score=44.93 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 481
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.05 E-value=0.22 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 482
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.04 E-value=0.17 Score=44.46 Aligned_cols=24 Identities=17% Similarity=-0.054 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-|+|.|++|+|||+|..++...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 483
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.02 E-value=0.22 Score=44.31 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
...-|+|.|++|+|||+|...+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998753
No 484
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.97 E-value=0.28 Score=45.21 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCC
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
|...+|+||.|+|||++..||.-.++-+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g~ 50 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYWP 50 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 3467899999999999999999887654
No 485
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=88.97 E-value=0.49 Score=47.95 Aligned_cols=74 Identities=14% Similarity=0.310 Sum_probs=50.6
Q ss_pred ccccccccccCccCcchhhhhHHHHHHHHhhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCCCCCCChHHHHHHH
Q 012418 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINGNAGEPAKLIRQR 199 (464)
Q Consensus 120 ~r~~~f~n~~~~~~i~~~~~d~~~~~i~Kn~l~~~gi~~p~GLLL~GPPGtGKT~LAkaIA~elg~~~~~Ge~~k~Ir~~ 199 (464)
.+.|+||.+.+...--.++.+..+..++...+. |. .-.|+-||..|+|||+.. +|-+...|--.+.++++
T Consensus 43 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~--G~--n~tifAYGqTGSGKTyTM------~G~~~~~Giipr~~~~l 112 (349)
T 1t5c_A 43 SKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQ--GY--NGTIFAYGQTASGKTYTM------MGSEDHLGVIPRAIHDI 112 (349)
T ss_dssp SCEEECSCEECTTSCHHHHHHHTTHHHHHHHHT--TC--CEEEEEEESTTSSHHHHH------TBCSSSBCHHHHHHHHH
T ss_pred CeEEECCEEECCCCCHHHHHHHHHHHHHHHHHc--CC--ccceeeecCCCCCCCeEE------ecCCCCCchHHHHHHHH
Confidence 356888888775444455555555556666554 33 347889999999999765 35455567777888888
Q ss_pred HHHH
Q 012418 200 YREA 203 (464)
Q Consensus 200 F~~A 203 (464)
|...
T Consensus 113 F~~i 116 (349)
T 1t5c_A 113 FQKI 116 (349)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 8865
No 486
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.94 E-value=0.19 Score=46.74 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.-|+|.|++|+|||+|..++.+.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 457899999999999999999864
No 487
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.88 E-value=0.23 Score=44.69 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=19.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
.-|+|.|+||+|||+|..++..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999999864
No 488
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.88 E-value=0.26 Score=45.41 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 012418 162 LGIWGGKGQGKSFQCELVFAKM 183 (464)
Q Consensus 162 LLL~GPPGtGKT~LAkaIA~el 183 (464)
|.|-|+-|+|||++++.+++.|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999987
No 489
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=88.87 E-value=0.31 Score=51.06 Aligned_cols=26 Identities=19% Similarity=0.099 Sum_probs=21.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHH
Q 012418 156 VKVPLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 156 i~~p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
....+..++.|+||||||++...++.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 34557889999999999999987764
No 490
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.85 E-value=0.18 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.4
Q ss_pred CCCcE--EEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLI--LGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~G--LLL~GPPGtGKT~LAkaIA~e 182 (464)
+..-. +.|.||+|+|||+|.+++++.
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 33445 889999999999999999875
No 491
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.77 E-value=0.24 Score=44.57 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|...+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999998864
No 492
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.77 E-value=0.22 Score=44.68 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
+.+.-|+|.|++|+|||+|...+...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34457899999999999999998743
No 493
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.75 E-value=0.24 Score=44.65 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..-|+|.|++|+|||+|...+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 356899999999999999999753
No 494
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.69 E-value=0.23 Score=44.79 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|++|+|||+|..++...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999998853
No 495
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=88.61 E-value=0.11 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred EEEcCCCccHHHHHHHHHHHhCCC
Q 012418 163 GIWGGKGQGKSFQCELVFAKMGIN 186 (464)
Q Consensus 163 LL~GPPGtGKT~LAkaIA~elg~~ 186 (464)
+|.||.|||||+|.++|+..+...
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHhcccccC
Confidence 467999999999999999988644
No 496
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.55 E-value=0.28 Score=44.22 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 012418 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 157 ~~p~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
..+.-|+|.|++|+|||+|...+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34467899999999999999998864
No 497
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.54 E-value=0.23 Score=43.74 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
.+.-|+|.|++|+|||+|...+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 336789999999999999999875
No 498
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=88.52 E-value=0.28 Score=44.02 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 012418 160 LILGIWGGKGQGKSFQCELVFAK 182 (464)
Q Consensus 160 ~GLLL~GPPGtGKT~LAkaIA~e 182 (464)
.-|+|.|+||+|||+|...+++.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999864
No 499
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.48 E-value=0.28 Score=43.81 Aligned_cols=24 Identities=13% Similarity=-0.025 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHH
Q 012418 158 VPLILGIWGGKGQGKSFQCELVFA 181 (464)
Q Consensus 158 ~p~GLLL~GPPGtGKT~LAkaIA~ 181 (464)
...-|+|.|++|+|||+|...+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999999864
No 500
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.36 E-value=0.26 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHH
Q 012418 159 PLILGIWGGKGQGKSFQCELVF 180 (464)
Q Consensus 159 p~GLLL~GPPGtGKT~LAkaIA 180 (464)
...+.|.||+|+|||+|.++++
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999999999
Done!