BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012419
(464 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38961|SNM1_ARATH DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1
PE=2 SV=1
Length = 484
Score = 583 bits (1504), Expect = e-166, Method: Compositional matrix adjust.
Identities = 303/449 (67%), Positives = 352/449 (78%), Gaps = 28/449 (6%)
Query: 37 DDDEEEEEKEESFADDFYRCGTDWSCLLQTE-------RKLKQANLFDMWGLKSNS---- 85
+DD EE E+EE FA DFY+ G+DWSCL++ E +K+KQ+NLF +WGL+ NS
Sbjct: 34 NDDVEENEEEEGFASDFYKAGSDWSCLVEDEETVSSSVKKMKQSNLFQIWGLQENSPDTT 93
Query: 86 -ESEANCLF--------SPPMKKLKASNGKSTATHLKKIVD--------RSCPFYKKIPG 128
+ + LF SP S K+T+ K+ D R CPFYKK+PG
Sbjct: 94 KKMKQTDLFQSWGLQKPSPFTSPASNSAKKTTSALGKRRRDSSFSNDSPRPCPFYKKLPG 153
Query: 129 TPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPS 188
TPFTVDAFRYG ++GCSAYFLTHFH DHY GL K WSHGPIYCS LT+RL+R+ L VNPS
Sbjct: 154 TPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRLSLSVNPS 213
Query: 189 YIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLL 248
IHPLEL+ E+ I+G+KVTL+EANHCPGAALIHFRL DG CYLHTGDFRAS+ MQ++PLL
Sbjct: 214 SIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQMQTHPLL 273
Query: 249 VNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVF 308
N RV+VLYLDTTYCNP+YKFPSKEDVL+YVVR+TK+ L+KQPKTL+VVG+YSIGKE V+
Sbjct: 274 FNQRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGKECVY 333
Query: 309 LAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLK 368
LAI+KALGVKI+ANASRRR+LQSF W ++S NL T G T LHVLPMSSLK E L ++LK
Sbjct: 334 LAIAKALGVKIFANASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSLKVERLDEHLK 393
Query: 369 PYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQF 428
Y QY AVLAFRPTGWTYSE +G LDLI+P SRG ITIYGVPYSEHSSFTELREFVQF
Sbjct: 394 IYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYSEHSSFTELREFVQF 453
Query: 429 LRPDKIIPTVNVWNAASREKMQSFFREWL 457
LRPDKIIPTVN NA +REKMQS FREWL
Sbjct: 454 LRPDKIIPTVNNGNAGTREKMQSCFREWL 482
>sp|Q6PJP8|DCR1A_HUMAN DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3
Length = 1040
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/339 (51%), Positives = 239/339 (70%), Gaps = 3/339 (0%)
Query: 118 RSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTAR 177
++CPFYKKIPGT FTVDAF+YG ++GC+AYFLTHFH DHY GL K ++ P+YCS +T
Sbjct: 699 KTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKHFTF-PVYCSEITGN 757
Query: 178 LVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFR 237
L++ L V YIHPL L+TE +++GVKV LL+ANHCPGA +I F L +G LHTGDFR
Sbjct: 758 LLKNKLHVQEQYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFR 817
Query: 238 ASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVV 297
A M+ LL + +V++LYLDTTYC+P+Y FPS+++V+ + + + P LVV
Sbjct: 818 ADPSMERS-LLADQKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNPHALVVC 876
Query: 298 GAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSS 357
G YSIGKE VFLAI+ LG K+ + + + LQ + PE++ + T +L+H+LPM
Sbjct: 877 GTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEINSLITTDMCSSLVHLLPMMQ 936
Query: 358 LKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHS 417
+ F+ L+ +LK G +Y +LAFRPTGWT+S D+I P ++GNI+IYG+PYSEHS
Sbjct: 937 INFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFTRIADVI-PQTKGNISIYGIPYSEHS 995
Query: 418 SFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREW 456
S+ E++ FVQ+L+P KIIPTVNV SR M+ +FREW
Sbjct: 996 SYLEMKRFVQWLKPQKIIPTVNVGTWKSRSTMEKYFREW 1034
>sp|Q9JIC3|DCR1A_MOUSE DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1 SV=2
Length = 1026
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/341 (51%), Positives = 239/341 (70%), Gaps = 3/341 (0%)
Query: 116 VDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLT 175
V R+CPFYK+IPGT FTVDAF+YG I+GC+AYFLTHFH DHY GL K ++ P+YCS +T
Sbjct: 683 VRRTCPFYKRIPGTGFTVDAFQYGEIEGCTAYFLTHFHSDHYAGLSKDFTR-PVYCSEIT 741
Query: 176 ARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGD 235
L++ L V YI L ++TE V+D VKV LL+ANHCPGA +I F+L +G LHTGD
Sbjct: 742 GNLLKKKLRVQEQYIRQLPMDTECVVDSVKVVLLDANHCPGATMILFQLPNGAVILHTGD 801
Query: 236 FRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLV 295
FRA M+ L +V+ L+LDTTYC+P+Y FPS+++V+ + + + P+ LV
Sbjct: 802 FRADPSMERS-RLAGRKVHTLFLDTTYCSPEYTFPSQQEVIQFAINTAFEAVTLNPRALV 860
Query: 296 VVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPM 355
V G Y IGKE VFLAI+ LG K+ + + + LQ + PE+S + T D+L+H+LPM
Sbjct: 861 VCGTYCIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEVSSLITTDMCDSLVHLLPM 920
Query: 356 SSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSE 415
+ F+ L+ +LK G +Y +LAFRPTGWT+S + + D+I P +RGNI+IYG+PYSE
Sbjct: 921 MQINFKGLQSHLKKCGGKYDQILAFRPTGWTHSNNITSTADII-PQTRGNISIYGIPYSE 979
Query: 416 HSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREW 456
HSS+ E++ FVQ+L+P KIIPTVNV + SR M+ +F+EW
Sbjct: 980 HSSYLEMKRFVQWLKPQKIIPTVNVGSFRSRNTMEKYFKEW 1020
>sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1
SV=1
Length = 972
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 239/340 (70%), Gaps = 2/340 (0%)
Query: 118 RSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTAR 177
+ CPFYKKIPGT FTVDAF+YG I+GC+AYFLTHFH DHY GL K + P+YC+ +T
Sbjct: 628 KQCPFYKKIPGTGFTVDAFQYGEIEGCTAYFLTHFHSDHYCGLTKNFVF-PLYCNKITGN 686
Query: 178 LVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFR 237
LV+ L V YI+ L ++TE +++G+KV LL+ANHCPGA +I F L G LHTGDFR
Sbjct: 687 LVKSKLRVKEQYINVLPMDTECIVNGIKVLLLDANHCPGATMILFYLPSGTAILHTGDFR 746
Query: 238 ASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVV 297
A M+ YP L+ +++ LYLDTTYC+P+Y FPS+++V+ + V + P+TLVV
Sbjct: 747 ADPSMERYPALIGQKIHTLYLDTTYCSPEYTFPSQQEVIQFAVNTAFEMVTLNPRTLVVC 806
Query: 298 GAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSS 357
G YSIGKE VFLAI++ LG K + + + LQ + ++ + + TLLH+LPM
Sbjct: 807 GTYSIGKEKVFLAIAEVLGSKASMSRDKYKTLQCLESAAVNSLITMNWDGTLLHILPMMQ 866
Query: 358 LKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHS 417
+ F+ L+D+L + + VLAF+PTGWTYS++ + +D I+P +RGNITIYG+PYSEHS
Sbjct: 867 INFKGLQDHLNKFSENFDQVLAFKPTGWTYSDSCLSVMD-IKPQTRGNITIYGIPYSEHS 925
Query: 418 SFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWL 457
S+ E++ FVQ+L+P KIIPTVNV + +R M+ FR+W+
Sbjct: 926 SYLEMKRFVQWLKPQKIIPTVNVGDWRARSLMEKHFRDWM 965
>sp|Q10264|PSO2_SCHPO DNA cross-link repair protein pso2/snm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pso2 PE=3 SV=3
Length = 560
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 202/370 (54%), Gaps = 27/370 (7%)
Query: 113 KKIVDRSC-PFYKKIP-GTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIY 170
K+I RS PFYK +P PF VDAF YG+I G AYFL+HFH DHYGGL +W HGPIY
Sbjct: 175 KQINVRSVVPFYKLMPYNIPFAVDAFAYGAIDGVEAYFLSHFHSDHYGGLTPKWKHGPIY 234
Query: 171 CSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFR-LQDGQC 229
CS +T L+ + V+ Y+ L+LN + I G+ V +L+ANHCPG+A+ F LQ Q
Sbjct: 235 CSEVTGNLLINVMHVDEQYVKRLKLNQPYNIMGITVYVLDANHCPGSAMFVFETLQSNQT 294
Query: 230 --YLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCL 287
LH GDFRAS+ +P+L ++ +YLDTTY NPKY FP + DV+ +
Sbjct: 295 RRVLHCGDFRASKDHVMHPVLREKTIHKVYLDTTYLNPKYTFPPQADVVQACADKAISIK 354
Query: 288 KK-QPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGN 346
K + LVVV YSIGKE V +AI+K+L +IY + +++ + +L L
Sbjct: 355 KSTDSRLLVVVSTYSIGKEKVAVAIAKSLSSRIYVVPRKMHIIKQLENQDLIDLLTDDPT 414
Query: 347 DTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYS------------------ 388
+H++ M + +L DYL+ Y + + ++ ++ TGWT+
Sbjct: 415 QASVHMVTMMGIHPNSLLDYLEQYNSSFDKIIGYKVTGWTFQPLENRAQLSSSLDSIISR 474
Query: 389 --ETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASR 446
+ V L IR S + + PYSEHSSF +L F + IIPTVNV + SR
Sbjct: 475 PPKFVEYDLRAIRG-STDKVAAFVAPYSEHSSFYDLTMFCLSMNIGHIIPTVNVGSQRSR 533
Query: 447 EKMQSFFREW 456
EKM + W
Sbjct: 534 EKMNVWLDRW 543
>sp|Q86KS1|DCR1_DICDI DNA cross-link repair 1 protein OS=Dictyostelium discoideum
GN=dclre1 PE=3 SV=1
Length = 920
Score = 234 bits (598), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 196/367 (53%), Gaps = 22/367 (5%)
Query: 106 KSTATHLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWS 165
+ T T KKI P +K I GT F VD F+Y S + + YFLTHFH DHY G+ K WS
Sbjct: 250 RKTPTKEKKIP----PSFKVIDGTNFLVDGFQYKS-EDFTHYFLTHFHSDHYVGITKTWS 304
Query: 166 HGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHF--- 222
G IYC+ T +LV L V+ YI E N I GVKV L++NHCPG+ALI F
Sbjct: 305 FGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIP 364
Query: 223 -RLQDG-----QCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVL 276
R +DG + LHTGDFR ++ M +YPLL ++ LYLD TYC+P+Y FP + +++
Sbjct: 365 LRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEII 424
Query: 277 NYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPE 336
V + + + +TL + G Y IGKE + L I+K G ++ + + +L
Sbjct: 425 KQVASIVRK--ENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCL 482
Query: 337 LSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLD 396
T T + MS L + + L N+Y V+ FRPTGWT ++
Sbjct: 483 DINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKS----- 537
Query: 397 LIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREW 456
I L+RG T Y V YSEHSSF ELR+ + RP +IIPTV+ + + + + F +
Sbjct: 538 -ITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDL 596
Query: 457 LSCKKLM 463
KK +
Sbjct: 597 YEKKKQL 603
>sp|Q5QJC3|DCR1B_CHICK 5' exonuclease Apollo OS=Gallus gallus GN=DCLRE1B PE=2 SV=1
Length = 457
Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 167/315 (53%), Gaps = 29/315 (9%)
Query: 126 IPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLV 185
IPGTP VD + G +FL+H H DH GL WS P+YCSPLTARL+ L V
Sbjct: 6 IPGTPIAVDFWSVRRAGGARLFFLSHMHSDHTVGLSSTWSR-PLYCSPLTARLLHHRLKV 64
Query: 186 NPSYIHPLELNTEHVI-DGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQS 244
+I PLE+ H + + V VTLL+ANHCPG+ + F G L+TGDFR S MQ
Sbjct: 65 PTRWIRPLEVGQSHAVGEEVTVTLLDANHCPGSVMFLFEGAFG-TILYTGDFRYSPAMQR 123
Query: 245 YPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGK 304
P L R++ LYLD T C P PS+ +L +++ P+ VV+G YS+GK
Sbjct: 124 EPALSGRRIDRLYLDNTNCRPHGALPSRSRAALQAAQL----IRRHPQHRVVIGVYSLGK 179
Query: 305 ESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLK 364
E + + ++ G + + SR ++ + PE+ T+ +H + ++ ++++TL
Sbjct: 180 EELLVDLALEFGTWVVVSPSRLEQMRLLELPEV---FTTEEGAGRIHAVDVAEIRWDTLV 236
Query: 365 DYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELRE 424
+ N +A PTG RP+ + I+ +PYS+HSSF+EL E
Sbjct: 237 SW-----NVLHPTIAILPTG--------------RPVKVTHPQIHLIPYSDHSSFSELCE 277
Query: 425 FVQFLRPDKIIPTVN 439
FV++L+P +IP V
Sbjct: 278 FVKWLKPCSVIPIVK 292
>sp|B0V2S2|DCR1B_DANRE 5' exonuclease Apollo OS=Danio rerio GN=dclre1b PE=2 SV=1
Length = 571
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 164/323 (50%), Gaps = 35/323 (10%)
Query: 124 KKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCL 183
K +P TP VD ++ +FL+H H DH GL WSH PIYCSPLTA+L+R+ L
Sbjct: 4 KVLPDTPIAVDCWQLRKCLHVRLFFLSHMHSDHTCGLSSTWSHRPIYCSPLTAKLLRLKL 63
Query: 184 LVNPSYIHPLELNTEHVI-------DGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDF 236
+ +I PLE+ +H++ + + V L++ANHCPGA + F+ G L+TGDF
Sbjct: 64 QIKQKWIRPLEIGQDHMLMLDDLGKERLTVNLIDANHCPGAVMFLFQGYFG-TRLYTGDF 122
Query: 237 RASRLMQSYPLLVNH-RVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLV 295
R + M P L NH ++VLYLD T C+P PS++ + K ++ P V
Sbjct: 123 RYTPSMLRVPCLQNHINIDVLYLDNTNCDPTRALPSRQQATQQI----KQIIRDHPGYAV 178
Query: 296 VVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPM 355
V+G YS+GKES+ + + A+ K + R R L++ +L T + V+
Sbjct: 179 VIGLYSLGKESLLVDL--AMEFKTWVEVDRER-LETLRVLQLPDVFTTDSGAGRIRVVNQ 235
Query: 356 SSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSE 415
S + L + N+ + +A PT RP+ + +Y VPYS+
Sbjct: 236 SMISASNLMAW-----NKLQSTIAILPTS--------------RPMVSCHPNVYVVPYSD 276
Query: 416 HSSFTELREFVQFLRPDKIIPTV 438
HSS+ EL +FV L P ++P V
Sbjct: 277 HSSYQELEDFVSALSPISLVPIV 299
>sp|D2H8V8|DCR1B_AILME 5' exonuclease Apollo OS=Ailuropoda melanoleuca GN=DCLRE1B PE=3
SV=1
Length = 529
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 170/343 (49%), Gaps = 42/343 (12%)
Query: 126 IPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLV 185
IP TP VD + +FL+H H DH GL W+ P+YCSP+TA LV L V
Sbjct: 6 IPHTPIAVDFWSLRRAGSARLFFLSHMHSDHTVGLSSTWAR-PLYCSPITAYLVHRHLQV 64
Query: 186 NPSYIHPLELNTEHVI-------DGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRA 238
+I LE+ HV+ + + VTL++ANHCPG+ + F G L+TGDFR
Sbjct: 65 PKEWIRALEVGESHVLPLDEIGRETMTVTLMDANHCPGSVMFLFEGYFG-TILYTGDFRY 123
Query: 239 SRLMQSYPLL-VNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVV 297
+ M P L + +++ LYLD T CNP + PS+++ +V L ++K P+ + +
Sbjct: 124 TPSMLKEPALKLGKQIHTLYLDNTNCNPAWVLPSRQEAARQIVEL----IRKHPQHNIKI 179
Query: 298 GAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSS 357
G YS+GKES+ + AL + + S RR L+ L+ + +H +
Sbjct: 180 GLYSLGKESLLEQL--ALEFQTWVVLSPRR-LELVQLLGLADVFTLEEKAGRIHAVDHME 236
Query: 358 LKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHS 417
+ + + NQ +A PT R + R + I+ +PYS+HS
Sbjct: 237 ICHSAMLHW-----NQTHPTIAILPTS--------------RKIHRSHPDIHIIPYSDHS 277
Query: 418 SFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLSCK 460
S++ELR FV L+P +++P V SR+ + +F++ LS +
Sbjct: 278 SYSELRTFVAALKPCQVVPIV------SRQPCRDYFQDSLSPR 314
>sp|P30620|PSO2_YEAST DNA cross-link repair protein PSO2/SNM1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PSO2 PE=1 SV=1
Length = 661
Score = 155 bits (391), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 135/446 (30%), Positives = 205/446 (45%), Gaps = 109/446 (24%)
Query: 121 PFYKKIP---GTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSH---GPI----Y 170
P +K I G VD F Y + + S YFL+HFH DHY GL K W++ PI Y
Sbjct: 215 PSFKIIKFNNGHEIVVDGFNYKASETISQYFLSHFHSDHYIGLKKSWNNPDENPIKKTLY 274
Query: 171 CSPLTARLVRMCLLVNPSYIHPLELNTEH-VIDGVKVTLLEANHCPGAALIHFRLQDGQC 229
CS +TA LV + + I L +N + D + V L+ANHCPGA ++ F+
Sbjct: 275 CSKITAILVNLKFKIPMDEIQILPMNKRFWITDTISVVTLDANHCPGAIIMLFQEFLANS 334
Query: 230 Y-------LHTGDFRASRLM-----QSYPLLVNHRVNVLYLDTTYCNPKYKFPSK----E 273
Y LHTGDFR++ M + N ++ +YLDTTY Y FPS+ E
Sbjct: 335 YDKPIRQILHTGDFRSNAKMIETIQKWLAETANETIDQVYLDTTYMTMGYNFPSQHSVCE 394
Query: 274 DVLNYVVRLTKNCLKK-------------QPKTLV--------VVGAYSIGKESVFLAIS 312
V ++ +RL K+ K + KTL +VG Y+IGKE + + I
Sbjct: 395 TVADFTLRLIKHGKNKTFGDSQRNLFHFQRKKTLTTHRYRVLFLVGTYTIGKEKLAIKIC 454
Query: 313 KALGVKIYANASRRR------VLQSFD-----WPE--LSGNLCTQGNDTLLHVLPMSSLK 359
+ L K++ + + VLQ+ + W E L+ NL +++ +H++P+ LK
Sbjct: 455 EFLKTKLFVMPNSVKFSMMLTVLQNNENQNDMWDESLLTSNL----HESSVHLVPIRVLK 510
Query: 360 F-ETLKDYLKP-------YGNQYAAVLAFRPTGWTYS----------------------- 388
ET++ YLK Y V+ F PTGW+++
Sbjct: 511 SQETIEAYLKSLKELETDYVKDIEDVVGFIPTGWSHNFGLKYQKKNDDDENEMSGNTEYC 570
Query: 389 -ETVGNQLD-----------LIRPLSRGN-ITIYGVPYSEHSSFTELREFVQFLRPDKII 435
E + N D ++R + N ++ VPYSEHSSF +L +F L+ ++I
Sbjct: 571 LELMKNDRDNDDENGFEISSILRQYKKYNKFQVFNVPYSEHSSFNDLVKFGCKLKCSEVI 630
Query: 436 PTVNVWNAASREKMQSFFREWLSCKK 461
PTVN+ N M ++F+ W + +K
Sbjct: 631 PTVNLNNLWKVRYMTNWFQCWENVRK 656
>sp|Q8C7W7|DCR1B_MOUSE 5' exonuclease Apollo OS=Mus musculus GN=Dclre1b PE=1 SV=2
Length = 541
Score = 155 bits (391), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 171/346 (49%), Gaps = 42/346 (12%)
Query: 126 IPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLV 185
IP TP VD + +FLTH H DH GL W+ P+YCSP+TA L+ L V
Sbjct: 6 IPQTPIAVDFWSLRRAGSARLFFLTHMHCDHTVGLSSTWAR-PLYCSPITACLLHRRLQV 64
Query: 186 NPSYIHPLELNTEHVI-------DGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRA 238
+ +I LE+ HV+ + + VTL++ANHCPG+ + F G L+TGDFR
Sbjct: 65 SKHWIRALEVGESHVLPLDEIGQETMTVTLIDANHCPGSVMFLFEGYFG-TILYTGDFRY 123
Query: 239 SRLMQSYP-LLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVV 297
+ M P L++ +++ LYLD T CNP PS+++ +V+L +++ P+ + +
Sbjct: 124 TPSMLKEPALILGKQIHTLYLDNTNCNPALVLPSRQEATQQIVQL----IRQFPQHNIKI 179
Query: 298 GAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSS 357
G YS+GKES+ ++ + + R ++Q L+ + +H + +
Sbjct: 180 GLYSLGKESLLEQLALEFRTWVVLSPQRLELVQLLG---LADVFTVEEEAGRIHAVDHTE 236
Query: 358 LKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHS 417
+ + + NQ +A PT R + + +IY VPYS+HS
Sbjct: 237 ICHSAMLQW-----NQSHPTIAIFPTS--------------RKVRSPHPSIYTVPYSDHS 277
Query: 418 SFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLSCKKLM 463
S++ELR FV LRP +++P V+ ++ FF++ LS + M
Sbjct: 278 SYSELRAFVAALRPCQVVPIVH------QKPCGEFFQDSLSPRLAM 317
>sp|Q4KLY6|DCR1B_RAT 5' exonuclease Apollo OS=Rattus norvegicus GN=Dclre1b PE=2 SV=2
Length = 541
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 167/346 (48%), Gaps = 42/346 (12%)
Query: 126 IPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLV 185
IP TP VD + +FL+H H DH GL W+ P+YCSP+TA L+ L V
Sbjct: 6 IPQTPIAVDFWSLRRAGTARLFFLSHMHCDHTVGLSSTWAR-PLYCSPITAHLLHRRLQV 64
Query: 186 NPSYIHPLELNTEHVI-------DGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRA 238
+ +I LE+ HV+ + + VTL++ANHCPG+ + F G L+TGDFR
Sbjct: 65 SKQWIRALEIGESHVLLLDEIGQETMTVTLIDANHCPGSVMFLFEGYFG-TILYTGDFRY 123
Query: 239 SRLMQSYP-LLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVV 297
+ M P L + +++ LYLD T CNP PS+++ +++L +++ P+ + +
Sbjct: 124 TPSMLKEPALTLGKQIHTLYLDNTNCNPALVLPSRQEATQQIIQL----IRQFPQHNIKI 179
Query: 298 GAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSS 357
G YS+GKES+ ++ + + R ++Q L+ + +H +
Sbjct: 180 GLYSLGKESLLEQLALEFQTWVVLSPQRLELVQLLG---LADVFTVEEEAGRIHAVDHME 236
Query: 358 LKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHS 417
+ + + NQ +A PT R + + +IY +PYS+HS
Sbjct: 237 ICHSAMLQW-----NQTHPTIAIFPTS--------------RKIRSPHPSIYSIPYSDHS 277
Query: 418 SFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLSCKKLM 463
S++ELR FV LRP +++P V + FF++ LS + M
Sbjct: 278 SYSELRAFVAALRPCQVVPIVR------EQPCGEFFQDSLSPRLSM 317
>sp|Q9H816|DCR1B_HUMAN 5' exonuclease Apollo OS=Homo sapiens GN=DCLRE1B PE=1 SV=1
Length = 532
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 161/322 (50%), Gaps = 36/322 (11%)
Query: 126 IPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLV 185
IP TP VD + +FL+H H DH GL W+ P+YCSP+TA L+ L V
Sbjct: 6 IPHTPIAVDFWSLRRAGTARLFFLSHMHSDHTVGLSSTWAR-PLYCSPITAHLLHRHLQV 64
Query: 186 NPSYIHPLELNTEHVI-------DGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRA 238
+ +I LE+ HV+ + + VTLL+ANHCPG+ + F G L+TGDFR
Sbjct: 65 SKQWIQALEVGESHVLPLDEIGQETMTVTLLDANHCPGSVMFLFEGYFG-TILYTGDFRY 123
Query: 239 SRLMQSYP-LLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVV 297
+ M P L + +++ LYLD T CNP PS+++ + +V+L ++K P+ + +
Sbjct: 124 TPSMLKEPALTLGKQIHTLYLDNTNCNPALVLPSRQEAAHQIVQL----IRKHPQHNIKI 179
Query: 298 GAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSS 357
G YS+GKES+ + AL + + S RR L+ L+ + +H +
Sbjct: 180 GLYSLGKESLLEQL--ALEFQTWVVLSPRR-LELVQLLGLADVFTVEEKAGRIHAVDHME 236
Query: 358 LKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHS 417
+ + + NQ +A PT R + + I+ +PYS+HS
Sbjct: 237 ICHSNMLRW-----NQTHPTIAILPTS--------------RKIHSSHPDIHVIPYSDHS 277
Query: 418 SFTELREFVQFLRPDKIIPTVN 439
S++ELR FV L+P +++P V+
Sbjct: 278 SYSELRAFVAALKPCQVVPIVS 299
>sp|Q5QJC2|DCR1C_CHICK Protein artemis OS=Gallus gallus GN=DCLRE1C PE=2 SV=1
Length = 714
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 168/352 (47%), Gaps = 68/352 (19%)
Query: 131 FTVDAFRYGSIKGCSAYFLTHFHYDHYGGLG-----KRWSHG---PIYCSPLTARLVRMC 182
++D F Y +++ AYFL+H H DH GL +R +YCSP+T L
Sbjct: 14 LSIDRFDYDNLRA-RAYFLSHCHKDHMKGLRAPALRRRLQSSLKVKLYCSPVTKEL---- 68
Query: 183 LLVNPSY------IHPLELNTEHVI----------DGVKVTLLEANHCPGAALIHFRLQD 226
LL N Y I LE+ T I + ++VTLL A HCPG+ + F+ ++
Sbjct: 69 LLTNSKYAFWENHIVALEVETPTQISLVDETTGEKEDIEVTLLPAGHCPGSVMFLFQGEN 128
Query: 227 GQCYLHTGDFR-----ASRLMQSYPLLVNHRVNVLYLDTTYCNPK-YKFPSKEDVLNYVV 280
G L+TGDFR A+R+ + + +YLDTT+C+P+ Y PS+E+ L+ ++
Sbjct: 129 GTV-LYTGDFRLAKGEAARMELLHSGTSVKDIQSVYLDTTFCDPRFYHIPSREECLSGIL 187
Query: 281 RLTKNCLKKQPKTLVVVGAYSI-GKESVFLAISKALGVKIYANASRRRVLQSF-DWPELS 338
L ++ +V + + G E +F+ +S+ LG+K++ N L F + PE+
Sbjct: 188 ELVRSWTTLSRYHVVWLNCKAAYGYEYLFINLSEELGIKVHVNK-----LDMFKNMPEIL 242
Query: 339 GNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAA-----------VLAFRP-TGWT 386
++ T T +H + + DY++ GN+ V++ +P T W
Sbjct: 243 YHITTD-RYTQIH-----ACRHPKDDDYVR--GNRLPCGITCQNGTPLHVISIKPSTMW- 293
Query: 387 YSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTV 438
G ++ + R + Y +S HSS++E+ +F+ ++RP + P V
Sbjct: 294 ----FGERIKKTNVIVRTGESTYRACFSFHSSYSEIMDFLSYIRPVNVYPNV 341
>sp|Q8K4J0|DCR1C_MOUSE Protein artemis OS=Mus musculus GN=Dclre1c PE=2 SV=2
Length = 705
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 161/343 (46%), Gaps = 50/343 (14%)
Query: 131 FTVDAFRYGSIKGCSAYFLTHFHYDHYGGLG----KRWSHGPI----YCSPLTARLVRMC 182
++D F ++K AYFL+H H DH GL KR + YCSP+T L
Sbjct: 14 ISIDRFDRENLKA-RAYFLSHCHKDHMKGLRAPSLKRRLECSLKVFLYCSPVTKEL---- 68
Query: 183 LLVNPSY------IHPLELNTEHVI----------DGVKVTLLEANHCPGAALIHFRLQD 226
LL +P Y I +E+ T I + V VTLL A HCPG+ + F+ +
Sbjct: 69 LLTSPKYRFWENRIITIEIETPTQISLVDEASGEKEEVVVTLLPAGHCPGSVMFLFQGSN 128
Query: 227 GQCYLHTGDFRASRLMQSYPLLVN-----HRVNVLYLDTTYCNPK-YKFPSKEDVLNYVV 280
G L+TGDFR ++ S L++ + +YLDTT+C+P+ Y+ PS+E L ++
Sbjct: 129 GT-VLYTGDFRLAKGEASRMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREQCLRGIL 187
Query: 281 RLTKNCLKKQPKTLVVVGAYSI-GKESVFLAISKALGVKIYANASRRRVLQSF-DWPELS 338
L ++ + + P +V + + G E +F +S+ LGV+++ + L F + P++
Sbjct: 188 ELVRSWVTRSPHHVVWLNCKAAYGYEYLFTNLSEELGVQVHVDK-----LDMFKNMPDIL 242
Query: 339 GNLCTQGNDTL---LHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQL 395
+L T N + H ++ L + ++ +P+ + E
Sbjct: 243 HHLTTDRNTQIHACRHPKAEECFQWNKLPCGITSQNKTALHTISIKPSTMWFGERTRKTN 302
Query: 396 DLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTV 438
++R + Y +S HSSF+E+++F+ ++ P + P V
Sbjct: 303 VIVR----TGESSYRACFSFHSSFSEIKDFLSYICPVNVYPNV 341
>sp|Q5XIX3|DCR1C_RAT Protein artemis OS=Rattus norvegicus GN=Dclre1c PE=2 SV=1
Length = 698
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 165/344 (47%), Gaps = 52/344 (15%)
Query: 131 FTVDAFRYGSIKGCSAYFLTHFHYDHYGGLG----KRWSHGPI----YCSPLTARLVRMC 182
++D F ++K AYFL+H H DH GL KR + YCSP+T L
Sbjct: 14 ISIDRFDRENLKA-RAYFLSHCHKDHMKGLRAPSMKRRLECSLKVFLYCSPVTKEL---- 68
Query: 183 LLVNPSY------IHPLELNTEHVI----------DGVKVTLLEANHCPGAALIHFRLQD 226
LL +P Y I +E+ T + + V VTLL A HCPG+ + F+ +
Sbjct: 69 LLTSPKYKFWENRIIAIEIETPTQVSLVDEASGEKEEVVVTLLPAGHCPGSVMFLFQGSN 128
Query: 227 GQCYLHTGDFRASRLMQSYPLLVN-----HRVNVLYLDTTYCNPK-YKFPSKEDVLNYVV 280
G L+TGDFR ++ S L++ + +YLDTT+C+P+ Y+ PS+E+ L V+
Sbjct: 129 G-TVLYTGDFRLAKGEVSRMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREECLRGVL 187
Query: 281 RLTKNCLKKQPKTLVVVGAYSI-GKESVFLAISKALGVKIYANASRRRVLQSF-DWPELS 338
L ++ + + PK +V + + G E +F +S+ LGV+++ + L F + P++
Sbjct: 188 ELVRSWITRSPKHVVWLNCKAAYGYEYLFTNLSEELGVQVHVDK-----LDMFKNMPDIL 242
Query: 339 GNLCTQGNDTLLHVL--PMSSLKFE--TLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQ 394
+L T N T +H P + F+ L + ++ +P+ + E
Sbjct: 243 HHLTTDRN-TQIHACRHPKAEEYFQWNKLPCGMASKTKTVLHTISIKPSTMWFGERTRKT 301
Query: 395 LDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTV 438
++ R + Y +S HSS++E+++F+ ++ P P V
Sbjct: 302 NVIV----RTGESSYRACFSFHSSYSEIKDFLSYICPVNAYPNV 341
>sp|Q96SD1|DCR1C_HUMAN Protein artemis OS=Homo sapiens GN=DCLRE1C PE=1 SV=2
Length = 692
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 162/344 (47%), Gaps = 52/344 (15%)
Query: 131 FTVDAFRYGSIKGCSAYFLTHFHYDHYGGLG----KRWSHGPI----YCSPLTARLVRMC 182
++D F +++ AYFL+H H DH GL KR + YCSP+T L
Sbjct: 14 ISIDRFDRENLRA-RAYFLSHCHKDHMKGLRAPTLKRRLECSLKVYLYCSPVTKEL---- 68
Query: 183 LLVNPSY------IHPLELNTEHVI----------DGVKVTLLEANHCPGAALIHFRLQD 226
LL +P Y I +E+ T I + + VTLL A HCPG+ + F+ +
Sbjct: 69 LLTSPKYRFWKKRIISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPGSVMFLFQGNN 128
Query: 227 GQCYLHTGDFR-----ASRLMQSYPLLVNHRVNVLYLDTTYCNPK-YKFPSKEDVLNYVV 280
G L+TGDFR A+R+ + + +YLDTT+C+P+ Y+ PS+E+ L+ V+
Sbjct: 129 GTV-LYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREECLSGVL 187
Query: 281 RLTKNCLKKQPKTLVVVGAYSI-GKESVFLAISKALGVKIYANASRRRVLQSF-DWPELS 338
L ++ + + P +V + + G E +F +S+ LGV+++ N L F + PE+
Sbjct: 188 ELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVNK-----LDMFRNMPEIL 242
Query: 339 GNLCTQGNDTL---LHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRP-TGWTYSETVGNQ 394
+L T N + H ++ L + +++ +P T W G +
Sbjct: 243 HHLTTDRNTQIHACRHPKAEEYFQWSKLPCGITSRNRIPLHIISIKPSTMW-----FGER 297
Query: 395 LDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTV 438
+ R + Y +S HSS++E+++F+ +L P P V
Sbjct: 298 SRKTNVIVRTGESSYRACFSFHSSYSEIKDFLSYLCPVNAYPNV 341
>sp|Q5R6Z9|DCR1C_PONAB Protein artemis OS=Pongo abelii GN=DCLRE1C PE=2 SV=1
Length = 692
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 162/344 (47%), Gaps = 52/344 (15%)
Query: 131 FTVDAFRYGSIKGCSAYFLTHFHYDHYGGLG----KRWSHGPI----YCSPLTARLVRMC 182
++D F +++ AYFL+H H DH GL KR + YCSP+T L
Sbjct: 14 ISIDRFDRENLRA-RAYFLSHCHKDHMKGLRAPTLKRRLECSLKVYLYCSPVTKEL---- 68
Query: 183 LLVNPSY------IHPLELNTEHVI----------DGVKVTLLEANHCPGAALIHFRLQD 226
LL +P Y I +E+ T I + + VTLL A HCPG+ + F+ +
Sbjct: 69 LLTSPKYRFWKKRIISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPGSVMFLFQGNN 128
Query: 227 GQCYLHTGDFR-----ASRLMQSYPLLVNHRVNVLYLDTTYCNPK-YKFPSKEDVLNYVV 280
G L+TGDFR A+R+ + + +YLDTT+C+P+ Y+ PS+E+ L+ ++
Sbjct: 129 GTV-LYTGDFRLAQGEAARMELLHSGGRIKDIQSVYLDTTFCDPRFYQIPSREECLSGIL 187
Query: 281 RLTKNCLKKQPKTLVVVGAYSI-GKESVFLAISKALGVKIYANASRRRVLQSF-DWPELS 338
L ++ + + P +V + + G E +F +S+ LGV+++ N L F + PE+
Sbjct: 188 ELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVNK-----LDMFRNMPEIL 242
Query: 339 GNLCTQGNDTL---LHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRP-TGWTYSETVGNQ 394
+L T N + H ++ L + +++ +P T W G +
Sbjct: 243 HHLTTDRNTQIHACRHPKAEEYFQWSKLPCGITSRNRIPLHIISIKPSTMW-----FGER 297
Query: 395 LDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTV 438
+ R + Y +S HSS++E+++F+ +L P P V
Sbjct: 298 SRKTNVIVRTGESSYRACFSFHSSYSEIKDFLSYLCPVNAYPNV 341
>sp|Q5RGE5|DCR1C_DANRE Protein artemis OS=Danio rerio GN=dclre1c PE=2 SV=1
Length = 639
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 149/337 (44%), Gaps = 67/337 (19%)
Query: 146 AYFLTHFHYDHYGGLGKRWSHGPI-------------YCSPLTARLVRMCLLVNPSY--- 189
AYFL+H H DH GL GP+ YCS +T L LL NP Y
Sbjct: 28 AYFLSHCHKDHMKGLK-----GPLLKRKLKFSLTVKLYCSYVTKEL----LLSNPRYAFW 78
Query: 190 ---IHPLELNTEHVI----------DGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDF 236
I PLEL++ I + V VTLL A HCPG+ + F G L+TGDF
Sbjct: 79 EDHIVPLELDSPTSISLIDESTGETEDVVVTLLSAGHCPGSVMFLFEGAKGTV-LYTGDF 137
Query: 237 R-----ASRLMQSYPLLVNHRVNVLYLDTTYCNPK-YKFPSKEDVLNYVVRLTKNCLKKQ 290
R A+R+ + + +Y+DTT+ +PK Y+ PS+E L + +L ++ + +
Sbjct: 138 RLAVGDAARMEYLHSGDRVKDIQSVYIDTTFFDPKYYQIPSREACLAGIQQLVQDWICQS 197
Query: 291 PKTLVVVGAYSI-GKESVFLAISKALGVKIYANASRRRVLQSF-DWPELSGNLC--TQGN 346
P +V + + G E +F + + +I+ N+ L F PE+ LC T
Sbjct: 198 PYHVVWLNCKAAYGYEYLFTNLGQEFNSQIHVNS-----LDMFKKMPEI---LCHVTTNR 249
Query: 347 DTLLHVLPMSSLKFETLKDYLKPYGNQYA-----AVLAFRPTGWTYSETVGNQLDLIRPL 401
T +H + E + P G+ +++ +P+ + E +++
Sbjct: 250 ATQIHACRHPKDE-EFFRANRLPCGSTAPDGIPLNIISIKPSTIWFGERTRKTSVVVKMG 308
Query: 402 SRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTV 438
S Y +S HSS+ E+++F+ ++ P I P V
Sbjct: 309 SSS----YRACFSFHSSYLEVKDFLSYICPVNIYPNV 341
>sp|B1ZZL9|DNLI_OPITP Probable DNA ligase OS=Opitutus terrae (strain DSM 11246 / PB90-1)
GN=lig PE=3 SV=1
Length = 1017
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 11/163 (6%)
Query: 148 FLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNP-SYIHPLELNTEHVIDGVKV 206
F++H H DH +H I CS TA L+R L ++ P TE + V
Sbjct: 30 FVSHAHSDHTA------THDEILCSAGTAALMRARLDAKRIEHVLPFG-QTEQLTADCGV 82
Query: 207 TLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPK 266
TL A H G+A + L+TGDF+ R + P H ++ ++TT+ P
Sbjct: 83 TLHPAGHIFGSAQCLLEHGEHGSLLYTGDFKLRRGRSAEPCATPH-AELVIMETTFGRPH 141
Query: 267 YKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFL 309
Y FP VLN + + + V+ YS+GK L
Sbjct: 142 YVFPPTAQVLNDIATFCHETIADD--GVPVLFGYSLGKSQELL 182
>sp|Q60355|Y047_METJA Uncharacterized protein MJ0047 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0047 PE=3 SV=2
Length = 428
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 29/197 (14%)
Query: 140 SIKGCSAYFLTHFHYDHYGGLG---KRWSHGPIYCSPLTARLVRMCLL------------ 184
SI+ F++H H DH G L R P+ + L+ +L+++ L
Sbjct: 46 SIRDVDKVFISHAHLDHSGALPVLFHRKMDVPVITTELSKKLIKVLLKDMVKIAETENKK 105
Query: 185 -------VNPSYIH--PLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGD 235
V + H PL N + L A H PG+A I Q+ + L+TGD
Sbjct: 106 IPYNNHDVKEAIRHTIPLNYNDKKYYKDFSYELFSAGHIPGSASILLNYQNNKTILYTGD 165
Query: 236 --FRASRLMQSYPL-LVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPK 292
R +RL + L +++L +++TY N + P ++ V + K L +
Sbjct: 166 VKLRDTRLTKGADLSYTKDDIDILIIESTYGNSIH--PDRKAVELSFIEKIKEILFRGGV 223
Query: 293 TLVVVGAYSIGKESVFL 309
L+ V A +E + +
Sbjct: 224 ALIPVFAVDRAQEILLI 240
>sp|Q58633|Y1236_METJA Uncharacterized protein MJ1236 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1236 PE=4 SV=1
Length = 634
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 55/195 (28%)
Query: 116 VDRSCPFYKKIPGTPFTVD----------AFRYG-----SIKGCSAYFLTHFHYDHYG-- 158
V RSC Y + P T +D AF + SI+ A +TH H DH G
Sbjct: 191 VGRSC-LYVQTPDTRVLIDCGINVACEDKAFPHFDAPEFSIEDLDAVIVTHAHLDHCGFI 249
Query: 159 -GLGKRWSHGPIYCS-------------------------PLTARLVRMCLLVNPSYIHP 192
GL + GP+YC+ P T++ ++ C+ + P
Sbjct: 250 PGLFRYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTSKDIKTCV----KHTIP 305
Query: 193 LELN-TEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYL-HTGD--FRASRLMQSYPLL 248
++ T + +K+TL A H G+A+ H + +G L +TGD F SRL++ P +
Sbjct: 306 IDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKFETSRLLE--PAV 363
Query: 249 VNH-RVNVLYLDTTY 262
R+ L +++TY
Sbjct: 364 CQFPRLETLIIESTY 378
>sp|Q55470|Y514_SYNY3 Uncharacterized protein sll0514 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0514 PE=4 SV=1
Length = 554
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 15/175 (8%)
Query: 148 FLTHFHYDHYGGL---GKRWSHGPIYCSPLTARLVRMCLL--VNPSYIHPLELNT-EHVI 201
F +H H DH GL +++ H PI S +T RL+ + P + L + + V+
Sbjct: 64 FCSHAHRDHGLGLWQFHQQFPHIPILASEVTQRLLPLNWPDEFVPPFCRVLPWRSPQEVL 123
Query: 202 DGVKVTLLEANHCPGAALIHFRLQDG-QCY--LHTGDFRASRLMQSYPL----LVNHRVN 254
G+ V LL A H PGAALI +G + Y ++TGD+ S L L L + +
Sbjct: 124 PGLTVELLPAGHLPGAALILLEYHNGDRLYRVIYTGDYCLSHLQLVDGLALTPLRGLKPD 183
Query: 255 VLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFL 309
VL L+ Y N + P + ++ + L K L+ V + +E + L
Sbjct: 184 VLILEGHYGN--RRLPHRRQQEKQFIQAIETVLAKGRNILLPVPPLGLAQEILKL 236
>sp|Q57626|Y162_METJA Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0162 PE=3 SV=1
Length = 421
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 28/207 (13%)
Query: 142 KGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLV----RMCLLVNPSY-----IHP 192
K A ++H H DH G + + IYC+ TA L+ R L + +Y H
Sbjct: 46 KAVDAVIVSHAHLDHCGAI-PFYKFKKIYCTHPTADLMFITWRDTLNLTKAYKEEDIQHA 104
Query: 193 LE----LN---TEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSY 245
+E LN + + +K A H G+A I+ + DG+ L+TGD
Sbjct: 105 MENIECLNYYEERQITENIKFKFYNAGHILGSASIYLEV-DGKKILYTGDINEGVSRTLL 163
Query: 246 PLLVN-HRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGK 304
P + ++VL +++TY +P P+++ + ++ ++ K V++ ++IG+
Sbjct: 164 PADTDIDEIDVLIIESTYGSPLDIKPARKTLERQLIEEISETIENGGK--VIIPVFAIGR 221
Query: 305 ESVFLAI-------SKALGVKIYANAS 324
L I K V IY + S
Sbjct: 222 AQEILLIINNYIRSGKLRDVPIYTDGS 248
>sp|Q02102|YLG3_ACIAM Uncharacterized protein in lig 3'region (Fragment) OS=Acidianus
ambivalens PE=4 SV=1
Length = 140
Score = 38.5 bits (88), Expect = 0.11, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 201 IDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDT 260
I+ K+ L++A+H GAA + +G+ +TGDF+ + P+L +VL +DT
Sbjct: 11 IEDEKIELVQADHVFGAAQVVVTNSNGESVGYTGDFKNPG--KGTPIL---NTDVLIVDT 65
Query: 261 TYCNPKYKFPSKEDV 275
TY P ++ +++V
Sbjct: 66 TYGKPTFRRKFRDEV 80
>sp|Q5SLP1|RNSE_THET8 Ribonuclease TTHA0252 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=TTHA0252 PE=1 SV=1
Length = 431
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 37/205 (18%)
Query: 129 TPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWS---HGPIYCSPLTARLVRMCL-- 183
PF D K A LTH H DH G L K + GP+Y + T L+ + L
Sbjct: 43 APFGFDP------KEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLED 96
Query: 184 --------LVNP-------SYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQ 228
P ++ PLE + + + +A H PG+A + +G+
Sbjct: 97 ALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFV-VAQGEGR 155
Query: 229 CYLHTGDF--RASRLM--QSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTK 284
+++GD R ++ S P L +++ + TY + ++ P +E V ++ L K
Sbjct: 156 TLVYSGDLGNREKDVLPDPSLPPL----ADLVLAEGTYGDRPHR-PYRETVREFLEILEK 210
Query: 285 NCLKKQPKTLVVVGAYSIGKESVFL 309
L + K L+ A +E +++
Sbjct: 211 -TLSQGGKVLIPTFAVERAQEILYV 234
>sp|B4SGR0|MIAA_PELPB tRNA dimethylallyltransferase OS=Pelodictyon phaeoclathratiforme
(strain DSM 5477 / BU-1) GN=miaA PE=3 SV=1
Length = 318
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 288 KKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFD 333
KKQP +V++G + GK ++ LA++K +G +I +A R++ + FD
Sbjct: 6 KKQPSVIVILGPTASGKSALALAVAKKIGGEII-SADSRQIYREFD 50
>sp|Q73XT9|RNZ_MYCPA Ribonuclease Z OS=Mycobacterium paratuberculosis (strain ATCC
BAA-968 / K-10) GN=rnz PE=3 SV=1
Length = 280
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 45/122 (36%), Gaps = 31/122 (25%)
Query: 145 SAYFLTHFHYDHYGGLG----KRWSHG--------PIYCSPLTARLVRMCLL-----VNP 187
SA LTH H DH G LG RW PI P TA LV L +
Sbjct: 55 SALLLTHLHSDHVGDLGDVLITRWISTFTPDPVPLPIIGPPGTAELVAATLNALRHDIGY 114
Query: 188 SYIHPLELNTEHVI-------------DGVKVTLLEANHCPGAALIHFRLQ-DGQCYLHT 233
H +LN + DGV + + +H P A I FR++ G +
Sbjct: 115 RIAHHADLNAPPAVDVREHTDGPVWDRDGVSIRVAPTDHRPVAPTIGFRVEYQGASVVLA 174
Query: 234 GD 235
GD
Sbjct: 175 GD 176
>sp|Q2YX35|RNJ1_STAAB Ribonuclease J 1 OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=SAB0955c PE=3 SV=1
Length = 565
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 146 AYFLTHFHYDHYGGLG--KRWSHGPIYCSPLTARLVRMCL----LVNPSYIHPLELNTEH 199
F+TH H DH GG+ + + PIY PL L+R L L+ + ++ E+N +
Sbjct: 69 GLFITHGHEDHIGGVPFLLKQLNIPIYGGPLALGLIRNKLEEHHLLRTAKLN--EINEDS 126
Query: 200 VIDGVKVTL---LEANHCPGAALIHFRLQDGQCYLHTGDFR 237
VI +T+ L + P + +G+ +HTGDF+
Sbjct: 127 VIKSKHLTISFYLTTHSIPETYGVIVDTPEGKV-VHTGDFK 166
>sp|Q9SPU7|TERT_ARATH Telomerase reverse transcriptase OS=Arabidopsis thaliana GN=TERT
PE=1 SV=1
Length = 1123
Score = 35.4 bits (80), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 82 KSNSESEANCLFSPPMKKLKASNGKSTATHLKKIVDRSCP 121
K N S + CL+ +K LK GK+ ++HLK ++D+ CP
Sbjct: 359 KGNCPSGSICLYHSLLKSLKNLIGKTKSSHLKMLLDKHCP 398
>sp|Q5BEP0|YSH1_EMENI Endoribonuclease ysh1 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ysh1 PE=3 SV=1
Length = 884
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 47/192 (24%)
Query: 116 VDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAY--------------FLTHFHYDHYGGL- 160
V RSC + G +DA + + +G SA ++HFH DH L
Sbjct: 35 VGRSCHIIQ-YKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLISHFHVDHSSALP 93
Query: 161 ---GKRWSHGPIYCSPLTAR----LVRMCLLVNPS---------------------YIHP 192
K G ++ + T L++ + VN + I
Sbjct: 94 YVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVNNTASSSDQRTTLYTEHDHLSTLPLIET 153
Query: 193 LELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNH- 251
++ NT H I+ +++T A H GAA+ + G L TGD+ P V
Sbjct: 154 IDFNTTHTINSIRITPYPAGHVLGAAMFLISIA-GLNILFTGDYSREEDRHLIPATVPRG 212
Query: 252 -RVNVLYLDTTY 262
+++VL ++T+
Sbjct: 213 VKIDVLITESTF 224
>sp|P56068|MURI_HELPY Glutamate racemase OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=murI PE=3 SV=1
Length = 255
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 172 SPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYL 231
S L L+ C+ Y PLE+ E VI G L A G + HF L +
Sbjct: 152 SILEGELLETCM---RYYFTPLEILPEVVILGCTHFPLIAQKIEGYFMEHFALSTPPLLI 208
Query: 232 HTGDFRASRLMQSYPL 247
H+GD L Q+Y L
Sbjct: 209 HSGDAIVEYLQQNYAL 224
>sp|B2UTT1|MURI_HELPS Glutamate racemase OS=Helicobacter pylori (strain Shi470) GN=murI
PE=3 SV=1
Length = 255
Score = 32.0 bits (71), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 174 LTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHT 233
L L+ C+ Y PLE+ E VI G L A+ G + HF L +H+
Sbjct: 154 LEGELLETCM---RYYFTPLEILPEVVILGCTHFPLIAHQIEGYFMEHFALSTPPLLIHS 210
Query: 234 GDFRASRLMQSYPL 247
GD L Q Y L
Sbjct: 211 GDAIVEYLQQKYAL 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,826,520
Number of Sequences: 539616
Number of extensions: 8143309
Number of successful extensions: 72126
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 65436
Number of HSP's gapped (non-prelim): 4554
length of query: 464
length of database: 191,569,459
effective HSP length: 121
effective length of query: 343
effective length of database: 126,275,923
effective search space: 43312641589
effective search space used: 43312641589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)