Query 012419
Match_columns 464
No_of_seqs 373 out of 2976
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1782 Predicted metal-depend 100.0 4.5E-52 9.7E-57 417.7 28.5 344 106-458 193-622 (637)
2 TIGR03675 arCOG00543 arCOG0054 100.0 1.3E-47 2.7E-52 414.2 33.4 339 111-458 195-615 (630)
3 KOG1361 Predicted hydrolase in 100.0 2.5E-43 5.4E-48 360.3 25.4 344 118-461 87-437 (481)
4 KOG1136 Predicted cleavage and 100.0 3.1E-42 6.7E-47 331.5 25.2 351 98-458 7-431 (501)
5 COG1236 YSH1 Predicted exonucl 100.0 1.4E-41 3E-46 353.7 29.8 335 111-460 21-413 (427)
6 KOG1137 mRNA cleavage and poly 100.0 8.9E-42 1.9E-46 345.9 22.1 358 92-460 11-440 (668)
7 TIGR00649 MG423 conserved hypo 100.0 2.1E-35 4.5E-40 308.6 32.2 328 111-454 21-397 (422)
8 COG0595 mRNA degradation ribon 100.0 2.6E-31 5.7E-36 280.6 29.9 324 111-450 29-403 (555)
9 PRK11709 putative L-ascorbate 99.9 2.7E-23 5.8E-28 211.2 16.4 197 58-261 18-251 (355)
10 KOG1135 mRNA cleavage and poly 99.9 3.5E-20 7.5E-25 193.5 22.8 274 111-394 22-364 (764)
11 KOG1138 Predicted cleavage and 99.7 4E-16 8.7E-21 158.1 20.7 280 141-435 94-471 (653)
12 PRK11244 phnP carbon-phosphoru 99.7 1.1E-16 2.3E-21 156.1 16.2 142 111-265 44-191 (250)
13 TIGR03307 PhnP phosphonate met 99.7 9.7E-17 2.1E-21 155.2 15.3 173 111-301 34-212 (238)
14 TIGR02651 RNase_Z ribonuclease 99.7 1.3E-17 2.9E-22 166.4 8.8 145 111-265 25-234 (299)
15 TIGR02649 true_RNase_BN ribonu 99.7 2.5E-17 5.3E-22 165.1 10.5 142 113-264 30-235 (303)
16 TIGR02108 PQQ_syn_pqqB coenzym 99.7 9.2E-16 2E-20 153.3 14.1 147 111-262 46-222 (302)
17 PF07522 DRMBL: DNA repair met 99.6 1.1E-15 2.4E-20 130.4 11.3 106 336-441 2-109 (110)
18 PF12706 Lactamase_B_2: Beta-l 99.6 9.2E-16 2E-20 142.6 10.9 139 115-264 2-159 (194)
19 PRK02126 ribonuclease Z; Provi 99.6 1.4E-14 2.9E-19 146.8 16.1 142 112-265 26-280 (334)
20 PRK02113 putative hydrolase; P 99.6 5.3E-15 1.2E-19 144.2 12.6 168 111-302 42-225 (252)
21 PRK05184 pyrroloquinoline quin 99.6 1.8E-14 3.8E-19 144.4 16.2 148 112-262 48-222 (302)
22 PRK00685 metal-dependent hydro 99.6 1.5E-13 3.3E-18 131.6 17.3 137 111-260 15-165 (228)
23 COG1234 ElaC Metal-dependent h 99.5 2.6E-14 5.6E-19 142.3 10.9 197 111-321 27-282 (292)
24 PRK00055 ribonuclease Z; Revie 99.5 1.7E-14 3.7E-19 141.4 5.8 142 111-265 27-200 (270)
25 PRK04286 hypothetical protein; 99.5 1.6E-13 3.5E-18 137.2 12.5 221 97-324 3-278 (298)
26 TIGR02650 RNase_Z_T_toga ribon 99.4 8.1E-13 1.8E-17 129.0 12.3 178 111-307 16-251 (277)
27 smart00849 Lactamase_B Metallo 99.3 4.5E-12 9.8E-17 115.8 7.8 124 111-241 13-148 (183)
28 PRK11921 metallo-beta-lactamas 99.3 5.6E-12 1.2E-16 131.0 9.3 150 77-236 6-163 (394)
29 PRK05452 anaerobic nitric oxid 99.2 1.4E-11 2.9E-16 130.9 8.3 152 77-236 8-167 (479)
30 COG2333 ComEC Predicted hydrol 99.2 1.6E-10 3.5E-15 114.3 12.9 191 111-323 61-267 (293)
31 COG2220 Predicted Zn-dependent 99.1 1.8E-09 3.8E-14 105.9 15.2 166 72-263 3-184 (258)
32 COG1235 PhnP Metal-dependent h 99.1 3.4E-10 7.3E-15 111.7 9.5 198 96-304 5-239 (269)
33 TIGR03413 GSH_gloB hydroxyacyl 99.1 1.6E-10 3.6E-15 112.6 7.1 108 113-239 20-130 (248)
34 KOG2121 Predicted metal-depend 99.1 2.6E-11 5.5E-16 129.2 1.2 145 112-265 470-653 (746)
35 TIGR00361 ComEC_Rec2 DNA inter 99.1 6.6E-10 1.4E-14 122.8 10.8 185 111-323 457-659 (662)
36 PLN02469 hydroxyacylglutathion 99.0 7.8E-10 1.7E-14 108.4 7.3 111 113-239 23-139 (258)
37 PF13483 Lactamase_B_3: Beta-l 99.0 3.2E-09 7E-14 96.6 10.3 96 142-261 35-137 (163)
38 PLN02398 hydroxyacylglutathion 98.9 2.7E-09 5.8E-14 107.6 8.9 88 142-239 120-210 (329)
39 PRK10241 hydroxyacylglutathion 98.9 1.6E-09 3.6E-14 105.8 6.2 107 112-239 21-131 (251)
40 PRK11539 ComEC family competen 98.9 3.7E-09 8.1E-14 118.4 9.5 180 111-322 518-716 (755)
41 PLN02962 hydroxyacylglutathion 98.9 2.9E-09 6.3E-14 103.8 7.1 112 113-239 36-154 (251)
42 COG0491 GloB Zn-dependent hydr 98.8 5E-09 1.1E-13 100.2 6.4 123 113-241 35-173 (252)
43 PF02112 PDEase_II: cAMP phosp 98.8 6.4E-08 1.4E-12 97.6 13.3 144 142-285 78-280 (335)
44 PF00753 Lactamase_B: Metallo- 98.7 5.8E-09 1.3E-13 94.9 2.2 126 111-241 13-151 (194)
45 COG0426 FpaA Uncharacterized f 98.7 5E-08 1.1E-12 99.3 8.2 126 102-237 32-167 (388)
46 PF07521 RMMBL: RNA-metabolisi 98.7 1.6E-08 3.5E-13 71.2 3.1 38 405-444 6-43 (43)
47 KOG0813 Glyoxylase [General fu 98.6 1.3E-07 2.9E-12 91.5 7.2 90 141-239 49-143 (265)
48 PF10996 Beta-Casp: Beta-Casp 98.5 4.4E-07 9.6E-12 78.8 8.2 48 346-395 79-126 (126)
49 COG5212 PDE1 Low-affinity cAMP 98.1 2E-05 4.3E-10 75.8 10.6 140 142-281 111-292 (356)
50 COG1237 Metal-dependent hydrol 98.0 1.6E-05 3.4E-10 76.6 7.3 61 111-177 29-96 (259)
51 COG2248 Predicted hydrolase (m 97.9 0.00026 5.7E-09 67.7 13.5 204 111-323 22-276 (304)
52 KOG0814 Glyoxylase [General fu 97.5 0.00019 4.1E-09 64.9 6.1 86 143-238 57-143 (237)
53 KOG3798 Predicted Zn-dependent 96.8 0.01 2.3E-07 56.9 10.2 158 139-305 128-307 (343)
54 PF14597 Lactamase_B_5: Metall 96.1 0.0024 5.2E-08 58.5 1.4 85 141-238 53-139 (199)
55 COG2015 Alkyl sulfatase and re 95.0 0.087 1.9E-06 55.1 8.0 82 141-222 162-292 (655)
56 KOG4736 Uncharacterized conser 83.9 3.2 7E-05 41.1 6.8 92 142-241 124-216 (302)
57 KOG1135 mRNA cleavage and poly 65.6 9.6 0.00021 41.9 5.0 49 405-455 536-584 (764)
58 PF13483 Lactamase_B_3: Beta-l 64.3 8.8 0.00019 34.3 4.0 32 407-438 130-163 (163)
59 KOG1137 mRNA cleavage and poly 59.9 18 0.00039 39.0 5.7 94 91-184 147-257 (668)
60 PF13433 Peripla_BP_5: Peripla 57.2 26 0.00056 36.2 6.2 142 278-439 55-198 (363)
61 PF13691 Lactamase_B_4: tRNase 57.0 5 0.00011 30.6 0.8 43 111-159 19-63 (63)
62 PF02670 DXP_reductoisom: 1-de 53.4 32 0.00069 30.1 5.3 43 405-453 24-66 (129)
63 PF06057 VirJ: Bacterial virul 52.7 19 0.00041 33.8 4.0 76 228-305 4-80 (192)
64 PF12706 Lactamase_B_2: Beta-l 50.2 15 0.00033 33.3 3.1 26 413-438 168-193 (194)
65 PRK00685 metal-dependent hydro 44.0 31 0.00068 32.4 4.3 25 414-438 168-192 (228)
66 PRK00055 ribonuclease Z; Revie 41.8 39 0.00085 32.5 4.7 27 413-439 207-233 (270)
67 PRK06683 hypothetical protein; 37.5 1.9E+02 0.004 23.1 7.1 52 285-336 21-73 (82)
68 PRK12270 kgd alpha-ketoglutara 34.0 89 0.0019 36.5 6.3 105 251-363 970-1083(1228)
69 PRK11709 putative L-ascorbate 29.0 63 0.0014 33.3 3.9 25 414-438 258-282 (355)
70 COG3961 Pyruvate decarboxylase 26.5 8.4E+02 0.018 26.6 11.6 59 270-329 189-250 (557)
71 PRK02113 putative hydrolase; P 25.5 1.1E+02 0.0023 29.3 4.7 26 413-438 197-222 (252)
72 PRK02126 ribonuclease Z; Provi 25.5 74 0.0016 32.4 3.6 30 413-444 287-316 (334)
73 PRK13602 putative ribosomal pr 23.8 3.7E+02 0.0081 21.3 7.2 51 285-335 21-72 (82)
74 TIGR02651 RNase_Z ribonuclease 23.8 1.2E+02 0.0026 29.8 4.7 26 413-438 241-266 (299)
75 PRK13601 putative L7Ae-like ri 22.3 4.1E+02 0.0089 21.2 6.9 50 285-334 18-68 (82)
76 COG3946 VirJ Type IV secretory 21.5 1.6E+02 0.0035 30.9 5.1 76 228-305 262-338 (456)
77 TIGR03307 PhnP phosphonate met 21.4 87 0.0019 29.8 3.1 28 414-443 186-213 (238)
78 COG1235 PhnP Metal-dependent h 21.3 82 0.0018 30.8 2.9 31 412-444 208-238 (269)
79 KOG3592 Microtubule-associated 21.2 37 0.00081 37.8 0.5 22 140-161 78-99 (934)
No 1
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=4.5e-52 Score=417.68 Aligned_cols=344 Identities=22% Similarity=0.326 Sum_probs=276.6
Q ss_pred Ccccc---cCCceeEEcCCCCCCCCCC----ceEecCCCcCCCCCccEEEeCccchhhhcCccc---cCCCCcEEeCHHH
Q 012419 106 KSTAT---HLKKIVDRSCPFYKKIPGT----PFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGK---RWSHGPIYCSPLT 175 (464)
Q Consensus 106 ~~~~~---~~~~~~lidcG~~~~~~~~----~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~---~~~~~~Iy~s~~t 175 (464)
|+++. ++..++|+|||......+. -+.++.|+ ...+|||+|||+|.||+|-||. .++.+||||+++|
T Consensus 193 GRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~---~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T~PT 269 (637)
T COG1782 193 GRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQ---PDELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCTPPT 269 (637)
T ss_pred cceeEEEecCCceEEEeccccCCCCccccCccccccccc---ccccceEEEeecccccccchhhhhhcCCCCCeeeCCCc
Confidence 44554 8999999999996644321 12233332 1369999999999999999996 4578999999999
Q ss_pred HHHHHHhhcc-----------C----------CCceEEcCCCCEEEE-CCEEEEEEEcCCCCCceEEEEEeeCCc-EEEE
Q 012419 176 ARLVRMCLLV-----------N----------PSYIHPLELNTEHVI-DGVKVTLLEANHCPGAALIHFRLQDGQ-CYLH 232 (464)
Q Consensus 176 ~~~l~~~~~~-----------~----------~~~~~~v~~~~~~~i-~~~~v~~~~agH~~gs~~~~i~~~~g~-~ily 232 (464)
..++-.+... . -....++++|+.-.| .++++|++.|||+.||++.++...+|. +|+|
T Consensus 270 RDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHIGdGlyNi~y 349 (637)
T COG1782 270 RDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGLYNIVY 349 (637)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEecCCceeEEE
Confidence 9876443210 0 134678999999988 789999999999999999999887764 8999
Q ss_pred ECCCCCCccccccccc-cCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccccHHHHHHHH
Q 012419 233 TGDFRASRLMQSYPLL-VNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAI 311 (464)
Q Consensus 233 tGD~~~~~~~~~~~~l-~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~Gr~qell~l 311 (464)
|||+.+.+..+..++- ..++++.||+|+||+.+....|++++++++|++.|++++++||+ ||||+|++||.||++.+
T Consensus 350 TGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~~d~q~~R~eaE~~L~~vi~~t~~rGGK--vLIP~fAVGR~QEvM~V 427 (637)
T COG1782 350 TGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRDDVQPPREEAEKELIKVINDTLKRGGK--VLIPVFAVGRSQEVMIV 427 (637)
T ss_pred ecccccceeeecChhhccCcchhheeeeeccCCccccCccHHHHHHHHHHHHHHHHhcCCe--EEEEeeeccccceehhH
Confidence 9999999887766542 25899999999999977777799999999999999999999998 99999999999999988
Q ss_pred HHHc-------CCeEEEcccHHHHHHh-------------------cCCCccccCccc-----------cCCCceEEEEe
Q 012419 312 SKAL-------GVKIYANASRRRVLQS-------------------FDWPELSGNLCT-----------QGNDTLLHVLP 354 (464)
Q Consensus 312 ~~~~-------~~~I~v~~~~~~i~~~-------------------~~~~~~~~~~~~-----------~~~~~~V~v~~ 354 (464)
++++ .+|||+|+++.+.... =.+|++++.+.. +..+|+|++++
T Consensus 428 Lee~mr~g~ipe~PVYlDGMI~EatAIhtaYPEyL~~~lr~~I~~~g~NPF~se~f~~V~~~~~r~~i~~~~ep~iIlaT 507 (637)
T COG1782 428 LEEAMRKGLIPEVPVYLDGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFKRVEGSDERQEIIESDEPAIILAT 507 (637)
T ss_pred HHHHHhcCCCCCCceeeeeeeeehhhhhhcCHHhhhHHHHHHHhcCCCCCccccceeecCChhHHHHHhcCCCCeEEEec
Confidence 8764 4799999986432211 124555543321 24689999999
Q ss_pred CCCCChhhHHHHHhhhCCCCCCEEEEeeccccccCCccccccccc-----cCCCCC-------EEEEeE-eccCCCCHHH
Q 012419 355 MSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIR-----PLSRGN-------ITIYGV-PYSEHSSFTE 421 (464)
Q Consensus 355 ~~~l~~g~~~~~l~~~~~~~~~~i~~~~tG~~~~~~~g~~l~~~~-----~~~~g~-------~~i~~i-~~S~Had~~e 421 (464)
+|||++|++.+||+.++++|+|.++| .|||+++|.||+++.-. +...|+ +.+..+ .||+|||+.|
T Consensus 508 SGMlnGGPvveyfk~lA~DprntliF--VgYQAeGTLGRriq~G~kEipi~~~~G~te~i~inMeV~tieGFSGHsdrrq 585 (637)
T COG1782 508 SGMLNGGPVVEYFKHLAPDPKNTLIF--VGYQAEGTLGRRIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGHSDRRQ 585 (637)
T ss_pred cccccCCcHHHHHHHhCCCCCceEEE--EEeccCcchhhhhhcCceecccccCCCCeEEEEEEEEEEEecCcCCCccHHH
Confidence 99999999999999999999999999 99999999999986422 122342 234445 5999999999
Q ss_pred HHHHHHhc--CCCeEEEecccCCHHHHHHHHHHHHHHHh
Q 012419 422 LREFVQFL--RPDKIIPTVNVWNAASREKMQSFFREWLS 458 (464)
Q Consensus 422 L~~~v~~l--~Pk~ViP~~~hg~~~~~~~l~~~l~~~l~ 458 (464)
|.+||+.+ +|++|+ ++|||+.++..|++.+.+-.+
T Consensus 586 L~~yvr~~~PkP~ki~--~~HGe~sk~~~lA~si~~~~~ 622 (637)
T COG1782 586 LMKYVRRMNPKPEKIL--LNHGEPSKCLDLASSIRRKFK 622 (637)
T ss_pred HHHHHHhcCCCCceeE--eecCChHHHHHHHHHHHhhcc
Confidence 99999999 568999 899999999999999887543
No 2
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=1.3e-47 Score=414.23 Aligned_cols=339 Identities=22% Similarity=0.344 Sum_probs=265.0
Q ss_pred cCCceeEEcCCCCCCCCC---Cc-eEecCCCcCCCCCccEEEeCccchhhhcCcccc---CCCCcEEeCHHHHHHHHHhh
Q 012419 111 HLKKIVDRSCPFYKKIPG---TP-FTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---WSHGPIYCSPLTARLVRMCL 183 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~---~~-~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~ 183 (464)
.++..+++|||....... .+ +....+ ...+||+|||||+|.||+|+||.+ +++++||++++|++++...+
T Consensus 195 ~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~---~~~~IDaVlITHaH~DHiG~LP~L~k~g~~gpIY~T~pT~~l~~~ll 271 (630)
T TIGR03675 195 TPESRILLDCGVNVGANGDNAYPYLDVPEF---QLDELDAVVITHAHLDHSGLVPLLFKYGYDGPVYCTPPTRDLMTLLQ 271 (630)
T ss_pred ECCCEEEEECCCCccccchhhcccccccCC---CHHHCcEEEECCCCHHHHhhHHHHHHhCCCCceeecHHHHHHHHHHH
Confidence 678899999998543111 11 011111 247899999999999999999963 46789999999998765432
Q ss_pred c----------cC-----------CCceEEcCCCCEEEE-CCEEEEEEEcCCCCCceEEEEEeeCC-cEEEEECCCCCCc
Q 012419 184 L----------VN-----------PSYIHPLELNTEHVI-DGVKVTLLEANHCPGAALIHFRLQDG-QCYLHTGDFRASR 240 (464)
Q Consensus 184 ~----------~~-----------~~~~~~v~~~~~~~i-~~~~v~~~~agH~~gs~~~~i~~~~g-~~ilytGD~~~~~ 240 (464)
. .. ...+.++++++++.+ ++++|+++++||++||+++.++..+| .+|+||||++...
T Consensus 272 ~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i~dg~~~IvYTGD~~~~~ 351 (630)
T TIGR03675 272 LDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHIGDGLYNIVYTGDFKYEK 351 (630)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEEECCCCEEEEEeCCCCCCC
Confidence 1 00 024678999999999 68999999999999999999887554 5899999999987
Q ss_pred ccccccc-ccCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccccHHHHHHHHHHHc----
Q 012419 241 LMQSYPL-LVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKAL---- 315 (464)
Q Consensus 241 ~~~~~~~-l~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~Gr~qell~l~~~~---- 315 (464)
.....+. ....++|+||+||||+++...+|++++..++|++.|+++++++|+ |+||+|++||.||++.++..+
T Consensus 352 ~~ll~~a~~~~~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~--VLIP~favGR~QEll~~L~~~~~~g 429 (630)
T TIGR03675 352 TRLLDPAVNKFPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGK--VLIPVFAVGRAQEVMLVLEEAMRKG 429 (630)
T ss_pred CcCccchhhcCCCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCE--EEEEechhHHHHHHHHHHHHHHHhC
Confidence 6554432 123689999999999998766799999999999999999998885 999999999999998877653
Q ss_pred ---CCeEEEcccHHHH---HHhc----------------CCCccccCcc---c--------cCCCceEEEEeCCCCChhh
Q 012419 316 ---GVKIYANASRRRV---LQSF----------------DWPELSGNLC---T--------QGNDTLLHVLPMSSLKFET 362 (464)
Q Consensus 316 ---~~~I~v~~~~~~i---~~~~----------------~~~~~~~~~~---~--------~~~~~~V~v~~~~~l~~g~ 362 (464)
.+|||++++..++ +..+ ..|+..+.+. + ...+|+|++++++||++|+
T Consensus 430 ~lp~~pIy~dg~~~~~t~i~~~~~e~l~~~~~~~i~~~~~npf~~~~~~~v~~~~~~~~i~~~~~p~VIiatsGMl~gG~ 509 (630)
T TIGR03675 430 LIPEVPVYLDGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFVRVEGSDERREIIESDEPAIILATSGMLNGGP 509 (630)
T ss_pred CCCCCcEEEEchHHHHHHHHHHhHHHhCHHHHHHHhhcCCCcccCCceEEeCCHHHHHHHhcCCCCEEEEECCCCCCcch
Confidence 4799999975432 2221 1122212111 1 2357999999999999999
Q ss_pred HHHHHhhhCCCCCCEEEEeeccccccCCccccccccc-c---CC-------CCCEEEEeEe-ccCCCCHHHHHHHHHhcC
Q 012419 363 LKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIR-P---LS-------RGNITIYGVP-YSEHSSFTELREFVQFLR 430 (464)
Q Consensus 363 ~~~~l~~~~~~~~~~i~~~~tG~~~~~~~g~~l~~~~-~---~~-------~g~~~i~~i~-~S~Had~~eL~~~v~~l~ 430 (464)
+++|+++++++++|.|+| +|||+++|.|++|+.-. . .. .-+++++.+. ||+|||++||++||+.++
T Consensus 510 ~~~~l~~l~~d~kn~Iif--vGyqa~gTlGr~l~~g~~~i~i~g~~~~~~i~v~~~V~~~~gfSaHaD~~~L~~~v~~~~ 587 (630)
T TIGR03675 510 VVEYLKLLAPDPRNSLVF--VGYQAEGTLGRRIQSGWREIPLTDEGKTETIKINMEVETVEGFSGHSDRRQLMNYVRRMQ 587 (630)
T ss_pred HHHHHHHHcCCCCCeEEE--eCCCCCCchHHHHhcCCcEEEecCCCCceEEEEEEEEEEeCCccccCCHHHHHHHHHhcC
Confidence 999999999999999999 99999999999876421 1 11 0144677776 999999999999999996
Q ss_pred C--CeEEEecccCCHHHHHHHHHHHHHHHh
Q 012419 431 P--DKIIPTVNVWNAASREKMQSFFREWLS 458 (464)
Q Consensus 431 P--k~ViP~~~hg~~~~~~~l~~~l~~~l~ 458 (464)
| ++|+ ++|||+.++..|++.|.+++.
T Consensus 588 p~p~~v~--lvHGe~~~~~~la~~l~~~~~ 615 (630)
T TIGR03675 588 PKPEKIL--LNHGEPSKILDLASSIYKKFN 615 (630)
T ss_pred CCCCEEE--EEcCCHHHHHHHHHHHHHHhC
Confidence 5 9999 999999999999999987653
No 3
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-43 Score=360.33 Aligned_cols=344 Identities=48% Similarity=0.811 Sum_probs=301.1
Q ss_pred EcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCccccCCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCC
Q 012419 118 RSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNT 197 (464)
Q Consensus 118 idcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~~~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~ 197 (464)
+.|.+++..|+..|.+|.|++..+..+.+.|+||+|.||..||...|.++++||++.|+.++...+.+....++.++.++
T Consensus 87 ~p~~~~~~~p~~~f~VD~f~~~~~~~~s~yFLsHFHSDHy~GL~~sW~~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~ 166 (481)
T KOG1361|consen 87 IPLHVIKVLPGGEFSVDAFRYGHIEGCSAYFLSHFHSDHYIGLTKSWSHPPLYCSPITARLVPLKVSVTKQSIQALDLNQ 166 (481)
T ss_pred CCCcceeecCCCcEEEehhhcCCccccceeeeecccccccccccccccCCcccccccchhhhhhhcccChhhceeecCCC
Confidence 67778888899999999999988889999999999999999999999999999999999999988888888999999999
Q ss_pred EEEECCEEEEEEEcCCCCCceEEEEEeeCCcEEEEECCCCCCccccccccccC-CCccEEEEeCCCCCCCCCCCCHHHHH
Q 012419 198 EHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVN-HRVNVLYLDTTYCNPKYKFPSKEDVL 276 (464)
Q Consensus 198 ~~~i~~~~v~~~~agH~~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~-~~~DlLi~EsT~~~~~~~~p~~~~~~ 276 (464)
++.+.++.|++++++||||+++|+|+...|..++|||||++...+...|++.. ..+|.+++|+||+++.+.||+++++.
T Consensus 167 ~~~i~~~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDtTycnp~y~Fpsq~esv 246 (481)
T KOG1361|consen 167 PLEIPGIQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRASADMSKEPALTLEQTIDILYLDTTYCNPKYDFPSQEESV 246 (481)
T ss_pred ceeecceEEEEeccccCCCceEEEeecCCCceEEecCCcccChhhhhChHHhcCCccceEEEeecccCCCCCCccHHHHH
Confidence 99999999999999999999999999988889999999999998876664433 78999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecccccHHHHHHHHHHHcCCeEEEcccHHHHHHhcCCCccccCccccCCCceEEEEeCC
Q 012419 277 NYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMS 356 (464)
Q Consensus 277 ~~l~~~i~~~l~~~~~~~vli~~~s~Gr~qell~l~~~~~~~I~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~v~~~~ 356 (464)
+.+++.|......+.+.+++|++|++|++..++++++.++.||++..+++.+++.+|+......+..+..+..|++++..
T Consensus 247 q~v~~~i~~~~~~~~~~Li~v~~ysiGkE~l~~eia~~l~~kI~v~~~~~~~~~~lg~~d~~~~~s~d~~~ssvhv~~~~ 326 (481)
T KOG1361|consen 247 QEVVDVIRSHASKNDRVLIVVGTYSIGKEKLLLEIARILNSKIWVEPRRLRLLQCLGFDDESKLLSIDVDESSVHVVPMN 326 (481)
T ss_pred HHHHHHHHhhhhhCCceEEEEEEEecchhHHHHHHHHHhCCceEEehhhchhhhhcCCCChhhhhccccccCceeEeehh
Confidence 99999999888887788999999999999999999999999999999999999999987665555557788899999988
Q ss_pred CCC-hhhHHHHHhhhCCCCCCEEEEeeccccccCCccccccccccCCCCCEEEEeEeccCCCCHHHHHHHHHhcCCCeEE
Q 012419 357 SLK-FETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKII 435 (464)
Q Consensus 357 ~l~-~g~~~~~l~~~~~~~~~~i~~~~tG~~~~~~~g~~l~~~~~~~~g~~~i~~i~~S~Had~~eL~~~v~~l~Pk~Vi 435 (464)
.+. ...++++..........++-+.+|||.............++...-++.++.+|||.|++++||.+|+++++|+.||
T Consensus 327 ~l~~~~~l~~~~~~~~~~~s~~v~~~~tgwt~~~~~s~~~~~~~~~~~~~i~~~~vpYseHSs~~el~~f~~~lk~k~ii 406 (481)
T KOG1361|consen 327 SLASSPSLKEYESQYEDGYSKLVGFSPTGWTKGKLVSLDKENSRPQSGSKIPISLVPYSEHSSYTELSEFLSKLKPKTII 406 (481)
T ss_pred hhccccchhhhhcccccCcceeEeecccccccccccccCccccccccccccccccccccccCCHHHHHHHHHhcCCCeee
Confidence 777 6667777777777888899999999987665544332222222226788899999999999999999999999999
Q ss_pred EecccCC----HHHH-HHHHHHHHHHHhhhh
Q 012419 436 PTVNVWN----AASR-EKMQSFFREWLSCKK 461 (464)
Q Consensus 436 P~~~hg~----~~~~-~~l~~~l~~~l~~~~ 461 (464)
|+++-+. .... +.+..++..|....+
T Consensus 407 ptv~~~~~~~~~~~~~~~k~s~~~~~~~~s~ 437 (481)
T KOG1361|consen 407 PTVNEDTELSDATEVPEEKSSLLLSWPADSK 437 (481)
T ss_pred cCccCCccccchhhhhhhhhhhhccchhhhh
Confidence 9999888 6666 678888887766544
No 4
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=3.1e-42 Score=331.48 Aligned_cols=351 Identities=16% Similarity=0.242 Sum_probs=271.6
Q ss_pred ccccccCCCcccc----cCCceeEEcCCCCCCCCCCceEecCCCc----CC-CCCccEEEeCccchhhhcCccc----cC
Q 012419 98 KKLKASNGKSTAT----HLKKIVDRSCPFYKKIPGTPFTVDAFRY----GS-IKGCSAYFLTHFHYDHYGGLGK----RW 164 (464)
Q Consensus 98 ~~l~~g~~~~~~~----~~~~~~lidcG~~~~~~~~~~~id~f~~----~~-i~~id~I~iTH~H~DHiggL~~----~~ 164 (464)
.+|++|+....+. .++.++++|||........ -..+.|.+ .. -.-||.|+|||+|.||+|+||+ -+
T Consensus 7 ~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~-rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~G 85 (501)
T KOG1136|consen 7 TPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDD-RRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVG 85 (501)
T ss_pred EeccCCcccCceEEEEEECCcEEEEecccccccCcc-ccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhC
Confidence 4466666633222 6889999999996532221 12333333 11 1468999999999999999997 47
Q ss_pred CCCcEEeCHHHHHHHHHhhcc------C----------------CCceEEcCCCCEEEE-CCEEEEEEEcCCCCCceEEE
Q 012419 165 SHGPIYCSPLTARLVRMCLLV------N----------------PSYIHPLELNTEHVI-DGVKVTLLEANHCPGAALIH 221 (464)
Q Consensus 165 ~~~~Iy~s~~t~~~l~~~~~~------~----------------~~~~~~v~~~~~~~i-~~~~v~~~~agH~~gs~~~~ 221 (464)
+.+|||++.+|+.+...++.. . -..+..+...+++.+ .++.|+++-+||..|+++|.
T Consensus 86 Y~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~ 165 (501)
T KOG1136|consen 86 YDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFY 165 (501)
T ss_pred CCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEE
Confidence 899999999999876655431 1 135677888899998 68999999999999999999
Q ss_pred EEeeCCcEEEEECCCCCCcccccccc-ccCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecc
Q 012419 222 FRLQDGQCYLHTGDFRASRLMQSYPL-LVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAY 300 (464)
Q Consensus 222 i~~~~g~~ilytGD~~~~~~~~~~~~-l~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~ 300 (464)
+.. +..+|+||||++..++..+-++ ....++|+||.|+||+.... .++...++++++.+.+++.+||+ |+||.|
T Consensus 166 ikv-Gd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYattiR--dskr~rERdFLk~VhecVa~GGk--vlIPvF 240 (501)
T KOG1136|consen 166 IKV-GDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIR--DSKRCRERDFLKKVHECVARGGK--VLIPVF 240 (501)
T ss_pred EEe-cceeEEEecCccCCcccccchhhhccccCceEEeeccceeeec--cccchhHHHHHHHHHHHHhcCCe--EEEEee
Confidence 998 4469999999999988765433 23478999999999998665 56777888999999999999997 999999
Q ss_pred cccHHHHHHHHHHH------cCCeEEEcccH----HHHHHhcC-C-----------Ccc--ccCcc------ccCCCceE
Q 012419 301 SIGKESVFLAISKA------LGVKIYANASR----RRVLQSFD-W-----------PEL--SGNLC------TQGNDTLL 350 (464)
Q Consensus 301 s~Gr~qell~l~~~------~~~~I~v~~~~----~~i~~~~~-~-----------~~~--~~~~~------~~~~~~~V 350 (464)
++||+||+.-+++. ++.|||+..-. ...|+.+. | ++. .+++. .+...|.|
T Consensus 241 ALGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~rNmfdfkhiKpfd~~~~~~pGp~V 320 (501)
T KOG1136|consen 241 ALGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVERNMFDFKHIKPFDRSYIEAPGPMV 320 (501)
T ss_pred ecchHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhccCCccccccCChhhhhhhcCCCCEE
Confidence 99999999777754 36899988642 12333321 1 100 11111 14578899
Q ss_pred EEEeCCCCChhhHHHHHhhhCCCCCCEEEEeeccccccCCcccccccccc--CCCC-----CEEEEeEeccCCCCHHHHH
Q 012419 351 HVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRP--LSRG-----NITIYGVPYSEHSSFTELR 423 (464)
Q Consensus 351 ~v~~~~~l~~g~~~~~l~~~~~~~~~~i~~~~tG~~~~~~~g~~l~~~~~--~~~g-----~~~i~~i~~S~Had~~eL~ 423 (464)
.++++||+.+|.+.+.+++|++++.|.|++ .||+..+|.|.+++...- ...| ++.+..+.||+|||..++.
T Consensus 321 lFatPGMLhaG~SLkvFK~W~~~~~Nlvim--PGYcV~GTvG~kvl~G~~kvei~~~~~eirl~V~~maFSaHaDAkGIm 398 (501)
T KOG1136|consen 321 LFATPGMLHAGFSLKVFKKWCPDPLNLVIM--PGYCVAGTVGHKVLNGATKVEIYGTKVEIRLKVEYMAFSAHADAKGIM 398 (501)
T ss_pred EEcCCcccccccchHHHHhhCCCccceEee--cCceeccchhhhhhCCccEEEEeeeEEEEEEEEEEeeeccccCchhHH
Confidence 999999999999999999999999999999 999999999988753210 0011 3456678899999999999
Q ss_pred HHHHhcCCCeEEEecccCCHHHHHHHHHHHHHHHh
Q 012419 424 EFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLS 458 (464)
Q Consensus 424 ~~v~~l~Pk~ViP~~~hg~~~~~~~l~~~l~~~l~ 458 (464)
++++...|+.|. ++|||..++.-|++.+.+++.
T Consensus 399 ~li~~csPknVm--lVHGE~~kM~~Lk~ki~~e~~ 431 (501)
T KOG1136|consen 399 QLIKQCSPKNVM--LVHGEKSKMKFLKEKIESEFD 431 (501)
T ss_pred HHHHhcCcceEE--EEeccchhhHHHHHhhHhhcC
Confidence 999999999999 999999999999998887764
No 5
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-41 Score=353.65 Aligned_cols=335 Identities=24% Similarity=0.318 Sum_probs=264.2
Q ss_pred cCCceeEEcCCCCCCCC--CCceEecCCCcCCCCCccEEEeCccchhhhcCcccc---CCCCcEEeCHHHHHHHHHhhcc
Q 012419 111 HLKKIVDRSCPFYKKIP--GTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---WSHGPIYCSPLTARLVRMCLLV 185 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~--~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~~~ 185 (464)
.+...+++|||...... ..+..- ++ .++|++||||+|.||+|+||.+ ..+.+||+|++|+.+++.++..
T Consensus 21 ~~~~~il~D~G~~~~~~~~~~p~~~-~~-----~~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~~l~d 94 (427)
T COG1236 21 TGGTRILLDCGLFPGDPSPERPLLP-PF-----PKVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVLLGD 94 (427)
T ss_pred ECCceEEEECCCCcCcCCccCCCCC-CC-----CCcCEEEeccCchhhhcccHHHHHhccCCceeeccCHHHHHHHHHHH
Confidence 46689999999966433 222111 22 3799999999999999999963 3458999999999988876542
Q ss_pred C--------------------CCceEEcCCCCEEEECCEEEEEEEcCCCCCceEEEEEeeCCcEEEEECCCCCCcccccc
Q 012419 186 N--------------------PSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSY 245 (464)
Q Consensus 186 ~--------------------~~~~~~v~~~~~~~i~~~~v~~~~agH~~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~ 245 (464)
. ...++++++++++++++++|+++++||++||++|.++. ++.+|+||||++...+....
T Consensus 95 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGHilGsa~~~le~-~~~~ilytGD~~~~~~~l~~ 173 (427)
T COG1236 95 SLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGHILGSAAILLEV-DGGRILYTGDVKRRKDRLLN 173 (427)
T ss_pred HHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecCCCccceeEEEEEe-CCceEEEEeccCCCcCCCCC
Confidence 1 13567899999999999999999999999999999997 45579999999987766554
Q ss_pred ccccCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccccHHHHHHHHHHHcC----CeEEE
Q 012419 246 PLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALG----VKIYA 321 (464)
Q Consensus 246 ~~l~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~Gr~qell~l~~~~~----~~I~v 321 (464)
+.-....+|+||+|+||+++. ||++...++.|++.|.+.+.+||. |+||+|++||.||++.+++.++ .|||+
T Consensus 174 ~a~~~~~~DvLI~EsTYg~~~--~~~r~~~e~~f~~~v~~~l~~GG~--vlipafa~graQEll~~L~~~~~~~~~pi~~ 249 (427)
T COG1236 174 GAELPPCIDVLIVESTYGDRL--HPNRDEVERRFIESVKAALERGGT--VLIPAFALGRAQELLLILRELGFAGDYPIYV 249 (427)
T ss_pred ccccCCCCcEEEEecccCCcc--CCCHHHHHHHHHHHHHHHHhCCCE--EEEecccccHHHHHHHHHHHHhccCCCCeEe
Confidence 431112379999999999955 489999999999999999999874 9999999999999999998876 89999
Q ss_pred cccHHHHHHhc-----CCCc--cc-----c--Ccc--------ccCCCceEEEEeCCCCChhhHHHHHhhhCCCCCCEEE
Q 012419 322 NASRRRVLQSF-----DWPE--LS-----G--NLC--------TQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLA 379 (464)
Q Consensus 322 ~~~~~~i~~~~-----~~~~--~~-----~--~~~--------~~~~~~~V~v~~~~~l~~g~~~~~l~~~~~~~~~~i~ 379 (464)
+++..+++..+ ++.. .. + .+. ....++.|++++++|+..|+.+.+++.+..++.|.++
T Consensus 250 d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~a~~gm~~~g~~~~~~~~~~~~~~n~~~ 329 (427)
T COG1236 250 DGPIARVALAYAKYPIGLDLPDLLKVAESRFRFVESRRNSMREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVL 329 (427)
T ss_pred ccHHHHHHHHHHHhchhccChHHHHHHHhhcccccchhhhhhhhccCCceEEEEecccccCCcHHHHHHHHhcCCcceEE
Confidence 99976654432 2211 10 0 000 1245778999999999999999999999999999999
Q ss_pred EeeccccccCCcccccccccc-------CCCCCEEEEeEeccCCCCHHHHHHHHHhcCCCeEEEecccCCHHHHHHHHHH
Q 012419 380 FRPTGWTYSETVGNQLDLIRP-------LSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSF 452 (464)
Q Consensus 380 ~~~tG~~~~~~~g~~l~~~~~-------~~~g~~~i~~i~~S~Had~~eL~~~v~~l~Pk~ViP~~~hg~~~~~~~l~~~ 452 (464)
+ +||+..++.|+.+..... ..+.+.++..+.+|+|+|..||.+||+...|++|+ ++||++.....+.++
T Consensus 330 l--~~~~~~~t~gr~~~~~~~~~~~~~~~i~~~~~ve~~~~s~Had~~~l~~~i~~~~~~~v~--~~Hg~~~~~~~~~~~ 405 (427)
T COG1236 330 L--PGYQAEGTLGRVLLEGGTSVHIKGIEIKVKARVEELDFSAHADGDELLEFIKDISPPKVV--LVHGEPEYGAALRAR 405 (427)
T ss_pred E--cccccCCcchhHHhcCCcEEeecceeecccceEEEeccccccCcHHHHHHHhcCCCceEE--EEeCCchhhhHHHHH
Confidence 9 999999999987654321 01123456678899999999999999999999999 889999876666666
Q ss_pred HHHHHhhh
Q 012419 453 FREWLSCK 460 (464)
Q Consensus 453 l~~~l~~~ 460 (464)
+.+.+...
T Consensus 406 ~~~e~~~~ 413 (427)
T COG1236 406 LLEELIGI 413 (427)
T ss_pred HHHhhCCc
Confidence 66655443
No 6
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=8.9e-42 Score=345.85 Aligned_cols=358 Identities=15% Similarity=0.235 Sum_probs=290.1
Q ss_pred CCCcccccccccCCCcccc----cCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc----
Q 012419 92 LFSPPMKKLKASNGKSTAT----HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---- 163 (464)
Q Consensus 92 ~~~~~~~~l~~g~~~~~~~----~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~---- 163 (464)
++...|.+|++|+....++ -+++.+++|||+.....|.. ..+.+..-....||.++|||+|.||++.||+.
T Consensus 11 ~d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~a-slpf~d~vd~s~id~llIthFhldh~aslp~~~qkT 89 (668)
T KOG1137|consen 11 SDQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMA-SLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKT 89 (668)
T ss_pred CCcEEEEECCCCcccCceEEEEEecCeEEEeccccCccccccc-cccchhhcccccccHHHHhhhhhhhcccccceeeec
Confidence 5567788899998855443 58889999999977655542 23333333458899999999999999999963
Q ss_pred CCCCcEEeCHHHHHHHHHhhccC---------------------CCceEEcCCCCEEEECCEEEEEEEcCCCCCceEEEE
Q 012419 164 WSHGPIYCSPLTARLVRMCLLVN---------------------PSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHF 222 (464)
Q Consensus 164 ~~~~~Iy~s~~t~~~l~~~~~~~---------------------~~~~~~v~~~~~~~i~~~~v~~~~agH~~gs~~~~i 222 (464)
.+.+.+|++.+|+...+..+... ..++.++++.+.++++|++++++.+||+.|++||.+
T Consensus 90 sf~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~aGhVlgacMf~v 169 (668)
T KOG1137|consen 90 SFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYHAGHVLGACMFMV 169 (668)
T ss_pred cccceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeeccchhhhheeeee
Confidence 36789999999999888766421 135788889999999999999999999999999999
Q ss_pred EeeCCcEEEEECCCCCCcccccc-ccccCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeccc
Q 012419 223 RLQDGQCYLHTGDFRASRLMQSY-PLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYS 301 (464)
Q Consensus 223 ~~~~g~~ilytGD~~~~~~~~~~-~~l~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s 301 (464)
+. +|.+++||||+....+..+. ...+..++|++|.|+||+... |.++++.+.+|..+|..+..+||+ +++|+|+
T Consensus 170 ei-agv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~--h~~r~~re~rlt~vIh~~v~rGGR--~L~PvFA 244 (668)
T KOG1137|consen 170 EI-AGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQI--HEPREEREGRLTWVIHSTVPRGGR--VLIPVFA 244 (668)
T ss_pred ee-ceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEe--cCchHHhhhhhhhhHHhhccCCCc--eEeeeee
Confidence 98 78899999999876655433 335568999999999999754 478899999999999999999886 9999999
Q ss_pred ccHHHHHHHHHHHc--------CCeEEEcccHH----HHHHhc------------C--CCccccCccc-------cCCCc
Q 012419 302 IGKESVFLAISKAL--------GVKIYANASRR----RVLQSF------------D--WPELSGNLCT-------QGNDT 348 (464)
Q Consensus 302 ~Gr~qell~l~~~~--------~~~I~v~~~~~----~i~~~~------------~--~~~~~~~~~~-------~~~~~ 348 (464)
+||+||++.++.++ ++|||..+..+ .+|+.+ + +|+..+++.. +...|
T Consensus 245 lgrAqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~~Npfifk~vs~L~~~D~f~D~gP 324 (668)
T KOG1137|consen 245 LGRAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSALRNPFIFKHVSILRTGDWFDDEGP 324 (668)
T ss_pred cchHHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhccCCceEeeccccccccccccccCC
Confidence 99999999888653 68999988753 234332 2 2333333221 35689
Q ss_pred eEEEEeCCCCChhhHHHHHhhhCCCCCCEEEEeeccccccCCcccccccccc----CCCC-----CEEEEeEeccCCCCH
Q 012419 349 LLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRP----LSRG-----NITIYGVPYSEHSSF 419 (464)
Q Consensus 349 ~V~v~~~~~l~~g~~~~~l~~~~~~~~~~i~~~~tG~~~~~~~g~~l~~~~~----~~~g-----~~~i~~i~~S~Had~ 419 (464)
+|+.++++|++.|.+++.+++|.++++|.+++ +||+.++|..+++++ .| ..+| ++.+..+.||+|.||
T Consensus 325 ~vv~aspgmlqsglSRelfe~wcsD~kN~vli--pGy~Vegtlak~il~-eP~eI~a~~G~klp~~m~V~~isFaAhvdy 401 (668)
T KOG1137|consen 325 SVVMASPGMLQSGLSRELFERWCSDSKNAVLI--PGYCVEGTLAKDILS-EPKEIMAMNGRKLPLRMQVEYISFAAHVDY 401 (668)
T ss_pred ceeEeCchHhhhhhhHHHHHHhCCCCCCcEEe--ccceechhHHHHHhc-CchhhhcccCCcccccceEEEEEeeechhh
Confidence 99999999999999999999999999999999 999999999877643 11 1123 567888999999999
Q ss_pred HHHHHHHHhcCCCeEEEecccCCHHHHHHHHHHHHHHHhhh
Q 012419 420 TELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLSCK 460 (464)
Q Consensus 420 ~eL~~~v~~l~Pk~ViP~~~hg~~~~~~~l~~~l~~~l~~~ 460 (464)
.+-.+|++.++|+++| +||||...+.+|+++|....+..
T Consensus 402 ~q~s~fi~~i~~~~li--lVHGE~neM~rLKs~L~~~f~d~ 440 (668)
T KOG1137|consen 402 LQNSEFIADITPPHLI--LVHGEANEMMRLKSALEAAFRDG 440 (668)
T ss_pred hhhHHHHHHhCCCeEE--EEecccchhHHHHHHHHHHhccC
Confidence 9999999999999999 99999999999999998766543
No 7
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=100.00 E-value=2.1e-35 Score=308.64 Aligned_cols=328 Identities=18% Similarity=0.220 Sum_probs=228.8
Q ss_pred cCCceeEEcCCCCC---CCCCCceEecCCCc--CCCCCccEEEeCccchhhhcCccccC---CCCcEEeCHHHHHHHHHh
Q 012419 111 HLKKIVDRSCPFYK---KIPGTPFTVDAFRY--GSIKGCSAYFLTHFHYDHYGGLGKRW---SHGPIYCSPLTARLVRMC 182 (464)
Q Consensus 111 ~~~~~~lidcG~~~---~~~~~~~~id~f~~--~~i~~id~I~iTH~H~DHiggL~~~~---~~~~Iy~s~~t~~~l~~~ 182 (464)
.++..+++|||... ...+....++.+.+ ....++++|||||+|.||++||+.+. ...+||+++.|+.+++..
T Consensus 21 ~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~~~~t~~~l~~~ 100 (422)
T TIGR00649 21 IDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPIYGTPLTIALIKSK 100 (422)
T ss_pred ECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeEEeCHHHHHHHHHH
Confidence 57788999999843 22233334444432 22368999999999999999999632 236899999999888765
Q ss_pred hcc---C-CCceEEcCCCCEEEEC-CEEEEEEEcCC-CCCceEEEEEeeCCcEEEEECCCCCCcccccc-c-----c--c
Q 012419 183 LLV---N-PSYIHPLELNTEHVID-GVKVTLLEANH-CPGAALIHFRLQDGQCYLHTGDFRASRLMQSY-P-----L--L 248 (464)
Q Consensus 183 ~~~---~-~~~~~~v~~~~~~~i~-~~~v~~~~agH-~~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~-~-----~--l 248 (464)
+.. . ...+++++++++++++ +++|++++++| +|||++|.+++++ ++++||||+++....... + . +
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~-~~ivytGD~~~~~~~~~~~~~d~~~l~~~ 179 (422)
T TIGR00649 101 IKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPL-GYIVYTGDFKFDNTPVIGEPPDLNRIAEY 179 (422)
T ss_pred HHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCC-cEEEECCCcCCCCCccCCcccCHHHHHhh
Confidence 431 1 2347789999999996 69999999999 7999999999754 589999999886433211 0 0 1
Q ss_pred cCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeccc--ccHHHHHHHHHHHcCCeEEEccc-H
Q 012419 249 VNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYS--IGKESVFLAISKALGVKIYANAS-R 325 (464)
Q Consensus 249 ~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s--~Gr~qell~l~~~~~~~I~v~~~-~ 325 (464)
...++|+||+||||+......++.+...+.+.+ .+++.+ .++++++|+ ++|.|++++++++.++||++++. .
T Consensus 180 ~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~----~~~~~~-~~viv~~fa~~~~R~~~i~~~a~~~~r~v~v~g~~~ 254 (422)
T TIGR00649 180 GKKGVLLLISDSTNVENPGFTPSEAKVLEQLND----IFKNAK-GRVIVATFASNIHRVQQLIQIARKQGRKFAVYGRSM 254 (422)
T ss_pred cccCeEEEEECCCCCCCCCCCCCHHHHHHHHHH----HHHhCC-CEEEEEEccccHHHHHHHHHHHHHhCCEEEEECccH
Confidence 135799999999999744333555554455444 443333 358999999 88999999999999999999974 3
Q ss_pred H---HHHHhcCCCcccc-------CccccCCCceEEEEeCCCCChhhHHHHHhhhCCCC--------CCEEEEeeccccc
Q 012419 326 R---RVLQSFDWPELSG-------NLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQY--------AAVLAFRPTGWTY 387 (464)
Q Consensus 326 ~---~i~~~~~~~~~~~-------~~~~~~~~~~V~v~~~~~l~~g~~~~~l~~~~~~~--------~~~i~~~~tG~~~ 387 (464)
. +++..+|+-...+ .+.+.++++.|++++++ ++++ ..++.+++.++ ++.|++ + +
T Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~vii~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~--s---~ 326 (422)
T TIGR00649 255 EHLFGIARRLGLIKNPHNNFISLKEVNNSPDENYLIITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTVVF--S---A 326 (422)
T ss_pred HHHHHHHHHcCCccCCccceeCHHHHhcCCcccEEEEEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEEEE--E---C
Confidence 3 3445555322111 12223456788888877 4666 56777776653 456666 3 5
Q ss_pred cCCcccc-cc---ccc-cCCCCCEEE-EeEeccCCCCHHHHHHHHHhcCCCeEEEecccCCHHHHHHHHHHHH
Q 012419 388 SETVGNQ-LD---LIR-PLSRGNITI-YGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFR 454 (464)
Q Consensus 388 ~~~~g~~-l~---~~~-~~~~g~~~i-~~i~~S~Had~~eL~~~v~~l~Pk~ViP~~~hg~~~~~~~l~~~l~ 454 (464)
+.++|++ +. .++ ...+-++++ +.+++|+||+++||+.|++.++|+++||+ ||+++....+++..+
T Consensus 327 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~dl~~~i~~~~Pk~~ipv--Hge~~~~~~~~~~a~ 397 (422)
T TIGR00649 327 PPIPGNENIAVSILLDIRLNEVGARVIKRIHVSGHASQEDHKLLLRLLKPKYIIPV--HGEYRMLINHTKLAE 397 (422)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCEEEeceEecCCCCHHHHHHHHHHhCCCEEEec--CCcHHHHHHHHHHHH
Confidence 6667766 21 111 111223344 34899999999999999999999999987 999998887777554
No 8
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=100.00 E-value=2.6e-31 Score=280.63 Aligned_cols=324 Identities=22% Similarity=0.280 Sum_probs=234.3
Q ss_pred cCCceeEEcCCCC---CCCCCCceEecCCCc--CCCCCccEEEeCccchhhhcCccccCC---CCcEEeCHHHHHHHHHh
Q 012419 111 HLKKIVDRSCPFY---KKIPGTPFTVDAFRY--GSIKGCSAYFLTHFHYDHYGGLGKRWS---HGPIYCSPLTARLVRMC 182 (464)
Q Consensus 111 ~~~~~~lidcG~~---~~~~~~~~~id~f~~--~~i~~id~I~iTH~H~DHiggL~~~~~---~~~Iy~s~~t~~~l~~~ 182 (464)
.+++.+.+|||.. ..+.+.+.+|+.+.+ ++..+|++|||||+|.||+|++|+++. .+|||+++.|+.+++..
T Consensus 29 ~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~piy~s~lt~~Li~~k 108 (555)
T COG0595 29 YGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFAPIYASPLTAALIKEK 108 (555)
T ss_pred ECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCcCceecCHhhHHHHHHH
Confidence 6789999999993 246777888888755 445799999999999999999998542 38999999999998877
Q ss_pred hccC-----CCceEEcCCCCEEEECCEEEEEEEcCC-CCCceEEEEEeeCCcEEEEECCCCCCccccccc--------cc
Q 012419 183 LLVN-----PSYIHPLELNTEHVIDGVKVTLLEANH-CPGAALIHFRLQDGQCYLHTGDFRASRLMQSYP--------LL 248 (464)
Q Consensus 183 ~~~~-----~~~~~~v~~~~~~~i~~~~v~~~~agH-~~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~~--------~l 248 (464)
+... ...++.+++++.+++++++|+++++.| +|+|+++.++++.| .|+|||||+++....... .+
T Consensus 109 ~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G-~Iv~TGDFk~d~~~~~g~~~d~~r~~~~ 187 (555)
T COG0595 109 LKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEG-NIVYTGDFKFDPTPVDGEPTDLARLAEI 187 (555)
T ss_pred HHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCCc-cEEEeCCEEecCCcCCCCcCCHHHHHHh
Confidence 5521 246889999999999999999999999 89999999999887 799999999887544211 11
Q ss_pred cCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeccc--ccHHHHHHHHHHHcCCeEEEcccHH
Q 012419 249 VNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYS--IGKESVFLAISKALGVKIYANASRR 326 (464)
Q Consensus 249 ~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s--~Gr~qell~l~~~~~~~I~v~~~~~ 326 (464)
...++++||+|||........++.+++.+.+.++++++ +.+|++.+|+ ++|.|.++.+|.+.|+++.+.+..+
T Consensus 188 g~eGVl~LisdsTna~~pg~t~SE~~v~~~l~~i~~~a-----~grVIv~tfaSni~Ri~~i~~~A~~~gR~vvv~GrSm 262 (555)
T COG0595 188 GKEGVLALISDSTNAENPGFTPSESEVGENLEDIIRNA-----KGRVIVTTFASNIERIQTIIDAAEKLGRKVVVTGRSM 262 (555)
T ss_pred ccCCcEEEEeCCcccCCCCCCCCHHHHHHHHHHHHHhC-----CCcEEEEEchhhHHHHHHHHHHHHHcCCeEEEEcHhH
Confidence 13579999999999986666788887778777777654 3358899998 5788999999999999999999765
Q ss_pred HH----HHhcCCCccc--cC-----ccccCCCceEEEEeCCCCChhhHHHHHhhhC--------CCCCCEEEEeeccccc
Q 012419 327 RV----LQSFDWPELS--GN-----LCTQGNDTLLHVLPMSSLKFETLKDYLKPYG--------NQYAAVLAFRPTGWTY 387 (464)
Q Consensus 327 ~i----~~~~~~~~~~--~~-----~~~~~~~~~V~v~~~~~l~~g~~~~~l~~~~--------~~~~~~i~~~~tG~~~ 387 (464)
.. .+.+|.-... .. +...+.+..+++|+.++ +++. ..+.+++ -.+++.++| +.
T Consensus 263 ~~~~~~a~~lg~~~~~~~~~i~~~~~~~~~~~~~lii~TG~q--gep~-aaL~r~a~~~h~~~~i~~gD~vIf--ss--- 334 (555)
T COG0595 263 ERLIAIARRLGYLKLPDESFIEIREVKRYPDEEVLIICTGSQ--GEPM-AALSRMANGEHRYVKIKEGDTVIF--SS--- 334 (555)
T ss_pred HHHHHHHhhcccccCccccccCHHHhccccccceEEEEeCCC--CCch-hhhhHhhcCCccceecCCCCeEEE--ec---
Confidence 33 3334431111 11 22234455677888765 3333 2333332 235666777 32
Q ss_pred cCCcccccc---cccc-CCCC-CE---EEEeEeccCCCCHHHHHHHHHhcCCCeEEEecccCCHHHHHHHH
Q 012419 388 SETVGNQLD---LIRP-LSRG-NI---TIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQ 450 (464)
Q Consensus 388 ~~~~g~~l~---~~~~-~~~g-~~---~i~~i~~S~Had~~eL~~~v~~l~Pk~ViP~~~hg~~~~~~~l~ 450 (464)
...+|++.. .++. ...| ++ ....++.|+|++.+||+.|++.++|++++|+ ||+++....-+
T Consensus 335 ~~ipgne~~~~~~~n~l~~~g~~i~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPv--HGeyr~~~~~a 403 (555)
T COG0595 335 SPIPGNEAAVYRLLNRLYKAGAKVITGGDKKVHVSGHASREELKLMINLLRPKYLIPV--HGEYRMLVAHA 403 (555)
T ss_pred cCcCCcHHHHHHHHHHHHhcCcEEeecccceeEecCCCChHHHHHHHHhhCCceeccc--CCCcHHHHHHH
Confidence 223332211 1111 1112 11 1135689999999999999999999999987 99987654333
No 9
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.90 E-value=2.7e-23 Score=211.22 Aligned_cols=197 Identities=20% Similarity=0.188 Sum_probs=149.1
Q ss_pred CCCchhcccc--ccccccceeeeecccCCCccccccCCCcccccccccCCCcccccCCce----eEEcCCCCCCCCC---
Q 012419 58 TDWSCLLQTE--RKLKQANLFDMWGLKSNSESEANCLFSPPMKKLKASNGKSTATHLKKI----VDRSCPFYKKIPG--- 128 (464)
Q Consensus 58 ~~w~~~~~~~--~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~----~lidcG~~~~~~~--- 128 (464)
-+|||||||| ++.|+++.++|||||+.+.|.++.++.+++++.|++.++.+...+.+. -..++|....+|.
T Consensus 18 ~~~~~~~~~~i~~~~~~~~~~~~~wlG~a~~li~~~~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~ 97 (355)
T PRK11709 18 PEWGTWLNEEIEQEVVPPGTFAMWWLGCTGIWLKTEGGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRT 97 (355)
T ss_pred CchhhhHHHHHHhcccCCCcEEEEEecceEEEEEcCCCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCC
Confidence 5899999999 899999999999999999999999999999999998766544333222 3467787665443
Q ss_pred CceEecCCCcCCCCCccEEEeCccchhhhcC--cccc---C-CCCcEEeCHHHHHHHHHhhccCCCceEEcCCCCEEEEC
Q 012419 129 TPFTVDAFRYGSIKGCSAYFLTHFHYDHYGG--LGKR---W-SHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVID 202 (464)
Q Consensus 129 ~~~~id~f~~~~i~~id~I~iTH~H~DHigg--L~~~---~-~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~~~~i~ 202 (464)
.+..+|++ .+.+||+|||||.|.||+.. +... . ...+++++..+.+++.. ++.+..+++.++.++++.++
T Consensus 98 ~p~~idp~---~i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~-~Gvp~~rv~~v~~Ge~i~ig 173 (355)
T PRK11709 98 QPFVLDPF---AIREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIG-WGVPKERCIVVKPGDVVKVK 173 (355)
T ss_pred CCcccCHH---HCCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHh-cCCCcceEEEecCCCcEEEC
Confidence 35567765 56789999999999999842 1211 1 34668998888776543 45666788999999999999
Q ss_pred CEEEEEEEcCCC----------------------CCceEEEEEeeCCcEEEEECCCCCCccccccccccCCCccEEEEeC
Q 012419 203 GVKVTLLEANHC----------------------PGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDT 260 (464)
Q Consensus 203 ~~~v~~~~agH~----------------------~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~Es 260 (464)
+++|+++++-|. ..+++|+|+. ++++|+|+||+.+.+..... ....++|++++..
T Consensus 174 ~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~-~~~tvy~sGDT~~~~~~~~i--~~~~~iDvall~i 250 (355)
T PRK11709 174 DIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKT-PGGNIYHSGDSHYSNYFAKH--GNDHQIDVALGSY 250 (355)
T ss_pred CEEEEEEeccccccccccccccccccccccccCCcceEEEEEEe-CCeEEEEeCCCCccHHHHHH--HhcCCCCEEEecC
Confidence 999999999441 1258899997 56799999999987543211 1224699999955
Q ss_pred C
Q 012419 261 T 261 (464)
Q Consensus 261 T 261 (464)
.
T Consensus 251 G 251 (355)
T PRK11709 251 G 251 (355)
T ss_pred C
Confidence 3
No 10
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=99.86 E-value=3.5e-20 Score=193.46 Aligned_cols=274 Identities=14% Similarity=0.139 Sum_probs=206.6
Q ss_pred cCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCccc----cCCCCcEEeCHHHHHHHHHhhc--
Q 012419 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGK----RWSHGPIYCSPLTARLVRMCLL-- 184 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~----~~~~~~Iy~s~~t~~~l~~~~~-- 184 (464)
..+-.+++|||......- -.++++. .-+..||||+|||...=|+||||+ .+.+++||+|-++..+.+..+.
T Consensus 22 iD~~~iLiDcGwd~~f~~--~~i~~l~-~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m~myD~ 98 (764)
T KOG1135|consen 22 IDGVRILIDCGWDESFDM--SMIKELK-PVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQMFMYDL 98 (764)
T ss_pred EcCeEEEEeCCCcchhcc--chhhhhh-cccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhhhHHHH
Confidence 577899999999653211 1233332 235899999999999999999996 3456899999999887654321
Q ss_pred --c-----------------CCCceEEcCCCCEEEEC----CEEEEEEEcCCCCCceEEEEEeeCCcEEEEECCCCCCcc
Q 012419 185 --V-----------------NPSYIHPLELNTEHVID----GVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRL 241 (464)
Q Consensus 185 --~-----------------~~~~~~~v~~~~~~~i~----~~~v~~~~agH~~gs~~~~i~~~~g~~ilytGD~~~~~~ 241 (464)
- ...++.++++.|++.+. |++|++++|||++|...|.|.. .+..|+|+-|++...+
T Consensus 99 ~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k-~~E~ivYavd~NHkKe 177 (764)
T KOG1135|consen 99 YRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISK-VGEDIVYAVDFNHKKE 177 (764)
T ss_pred HhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEe-cCceEEEEEecccchh
Confidence 0 12578999999999984 5799999999999999999986 6789999999999887
Q ss_pred ccccc--cccCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccccHHHHHHHHHHHc----
Q 012419 242 MQSYP--LLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKAL---- 315 (464)
Q Consensus 242 ~~~~~--~l~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~Gr~qell~l~~~~---- 315 (464)
..+.. +-...++.+||+++.+..-. .+++..+-+.|+..|.++++++|+ |+||+-+.||..|+..++.++
T Consensus 178 ~HLNG~~l~~l~RPsllITda~~~~~~--~~~rkkRDe~f~d~v~~~L~~~G~--VlipVDtAgRvLELa~iLdqlws~~ 253 (764)
T KOG1135|consen 178 RHLNGCSLSGLNRPSLLITDANHALYS--QPRRKKRDEQFLDTVLKTLRSGGN--VLIPVDTAGRVLELALILDQLWSQS 253 (764)
T ss_pred cccCCccccccCCcceEEecccccccc--ccchhHHHHHHHHHHHHHhcCCCc--EEEEecccHHHHHHHHHHHHHHhcc
Confidence 66543 11247899999999887643 388899999999999999999987 999999999999998888653
Q ss_pred --C---CeEEEcccH----H------------HHHHhcC----CCccccCcc---------ccCCCceEEEEeCCCCChh
Q 012419 316 --G---VKIYANASR----R------------RVLQSFD----WPELSGNLC---------TQGNDTLLHVLPMSSLKFE 361 (464)
Q Consensus 316 --~---~~I~v~~~~----~------------~i~~~~~----~~~~~~~~~---------~~~~~~~V~v~~~~~l~~g 361 (464)
+ .||++-+.. . ++.+.|. .|+..++++ ..+..|.|++++...+..|
T Consensus 254 ~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~fe~~r~NpFefrhi~l~~~~~dlsr~p~gpkVVlas~~~lE~G 333 (764)
T KOG1135|consen 254 DAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKMFEEARNNPFEFRHITLCHSLQDLSRVPPGPKVVLASVPDLECG 333 (764)
T ss_pred cCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHhhhhccCCcceeeeeeeecCHHHHhcCCCCCeEEEeeccchhcc
Confidence 2 566665432 1 1222221 232222221 2356789999999999999
Q ss_pred hHHHHHhhhCCCCCCEEEEeeccccccCCcccc
Q 012419 362 TLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQ 394 (464)
Q Consensus 362 ~~~~~l~~~~~~~~~~i~~~~tG~~~~~~~g~~ 394 (464)
.++..+-.|.++++|.|+| |-...++|..++
T Consensus 334 fsrd~fl~w~~d~~N~ill--t~r~~~~tLa~e 364 (764)
T KOG1135|consen 334 FSRDLFLEWASDPRNLILL--TERGSPGTLARE 364 (764)
T ss_pred hhHHHHHHHhcCCcceEEE--ecCCCchhHHHH
Confidence 9999999999999999988 555466666544
No 11
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.72 E-value=4e-16 Score=158.12 Aligned_cols=280 Identities=14% Similarity=0.157 Sum_probs=208.1
Q ss_pred CCCccEEEeCccchhhhcCccc----cCCCCcEEeCHHHHHHHHHhhcc--------C----------------------
Q 012419 141 IKGCSAYFLTHFHYDHYGGLGK----RWSHGPIYCSPLTARLVRMCLLV--------N---------------------- 186 (464)
Q Consensus 141 i~~id~I~iTH~H~DHiggL~~----~~~~~~Iy~s~~t~~~l~~~~~~--------~---------------------- 186 (464)
...||+|+||..|. +.|||. .++.++||++++|+++.+.++.. +
T Consensus 94 ~stiDvILISNy~~--mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsplk 171 (653)
T KOG1138|consen 94 ASTIDVILISNYMG--MLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPLK 171 (653)
T ss_pred ccceeEEEEcchhh--hcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCch
Confidence 36899999999886 889996 46788999999999876644320 0
Q ss_pred --------------------CCceEEcCCCCEEEE-CCEEEEEEEcCCCCCceEEEEEeeCCcEEEEECCCCCCcccc-c
Q 012419 187 --------------------PSYIHPLELNTEHVI-DGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQ-S 244 (464)
Q Consensus 187 --------------------~~~~~~v~~~~~~~i-~~~~v~~~~agH~~gs~~~~i~~~~g~~ilytGD~~~~~~~~-~ 244 (464)
-..++.+.+++.+.+ |-+.||++.+||+.||+.|.|.++++ ++.|..+........ .
T Consensus 172 ~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~ne-k~sYvS~Ss~ltth~r~ 250 (653)
T KOG1138|consen 172 KAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPNE-KLSYVSGSSFLTTHPRP 250 (653)
T ss_pred hhccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccceEEecCCc-ceEEEecCcccccCCcc
Confidence 024677888999987 57999999999999999999998766 688888876543211 1
Q ss_pred cccccCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccccHHHHHHHHHHHc-------CC
Q 012419 245 YPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKAL-------GV 317 (464)
Q Consensus 245 ~~~l~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~Gr~qell~l~~~~-------~~ 317 (464)
...-..+..|+||.-+--.-+. .+..+..-+++..|..+++++|. |++|||..|-..++++.+... +.
T Consensus 251 md~a~Lk~~Dvli~T~lsql~t---anpd~m~gelc~nvt~~~rn~Gs--vL~PcyPsGviydl~Ecls~~idna~ls~~ 325 (653)
T KOG1138|consen 251 MDQAGLKETDVLIYTGLSQLPT---ANPDEMGGELCKNVTLTGRNHGS--VLLPCYPSGVIYDLIECLSQDIDNAGLSDT 325 (653)
T ss_pred ccccccccccEEEEeccccccc---CCccchhhhHHHHHHHHhhcCCc--eeeeccCCchhhHHHHHhhhcccccCCcCC
Confidence 1111247899999877543332 35566777888888889999886 999999999999988766432 67
Q ss_pred eEEEcccHH-------HHHHhcC---------CCc--c-----------------ccCccccCCCceEEEEeCCCCChhh
Q 012419 318 KIYANASRR-------RVLQSFD---------WPE--L-----------------SGNLCTQGNDTLLHVLPMSSLKFET 362 (464)
Q Consensus 318 ~I~v~~~~~-------~i~~~~~---------~~~--~-----------------~~~~~~~~~~~~V~v~~~~~l~~g~ 362 (464)
|||+-+.++ .+++++- .|+ + ...+.++-+.|+|+++++.+++.|.
T Consensus 326 P~yfISpvadSsla~s~ilaEwls~akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~fSndfrqpcvvf~~H~SlRfgd 405 (653)
T KOG1138|consen 326 PIYFISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPHSTLITINRLKIYLSLLGLFSNDFRQPCVVFMGHPSLRFGD 405 (653)
T ss_pred cceEecccchhhhhHHHHHHHHHHhhhccceeccCCCCCCceEEeecceeehHHHHHHHhhhcccceeEecCCcchhhhH
Confidence 999988653 3443320 010 0 0113345678999999999999999
Q ss_pred HHHHHhhhCCCCCCEEEEeeccccccCCccccccccccCCCCCEEEEeEeccCCCCHHHHHHHHHhcCCCeEE
Q 012419 363 LKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKII 435 (464)
Q Consensus 363 ~~~~l~~~~~~~~~~i~~~~tG~~~~~~~g~~l~~~~~~~~g~~~i~~i~~S~Had~~eL~~~v~~l~Pk~Vi 435 (464)
..++++-|..+|.|.++|....+... +.+.|.+.--++++.+|+-..-++..|-++++.++|+.|+
T Consensus 406 v~h~~e~~g~sp~NsvI~tdpD~~~~-------~vl~PfrpLamK~i~cpidtrlnfqql~kLlkelqPk~vl 471 (653)
T KOG1138|consen 406 VVHFLECWGLSPKNSVIFTDPDFSYL-------LVLAPFRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVL 471 (653)
T ss_pred HHHHHHHhcCCCCCceEEeCCCCchh-------hhhcCCccccceeEeccccccccHHHHHHHHHHhCCCEEE
Confidence 99999999999999999932222221 1234544446688889999999999999999999999987
No 12
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.72 E-value=1.1e-16 Score=156.13 Aligned_cols=142 Identities=19% Similarity=0.080 Sum_probs=103.3
Q ss_pred cCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc----CCCCcEEeCHHHHHHHHHhhccC
Q 012419 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR----WSHGPIYCSPLTARLVRMCLLVN 186 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~----~~~~~Iy~s~~t~~~l~~~~~~~ 186 (464)
.++..+++|||...... .++ ..+||+|||||.|.||++||+.. ...++||+++.+..... .+...
T Consensus 44 ~~~~~iLiD~G~~~~~~----~~~------~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~-~~~~~ 112 (250)
T PRK11244 44 FNGARTLIDAGLPDLAE----RFP------PGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDD-LFKHP 112 (250)
T ss_pred ECCCEEEEECCChHHhh----cCC------cccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHH-HhcCc
Confidence 56678999999643111 122 26899999999999999999743 24578999987653322 22211
Q ss_pred -CCce-EEcCCCCEEEECCEEEEEEEcCCCCCceEEEEEeeCCcEEEEECCCCCCccccccccccCCCccEEEEeCCCCC
Q 012419 187 -PSYI-HPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCN 264 (464)
Q Consensus 187 -~~~~-~~v~~~~~~~i~~~~v~~~~agH~~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~EsT~~~ 264 (464)
...+ ..+..++.+.+++++|+++++.|..++++|+|+. ++++++|+||+...++... ..+...++|+||+|+||..
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~I~~~~~~H~~~s~g~~i~~-~~~~i~ysgDt~~~~~~~~-~~~~~~~~Dlli~e~~~~~ 190 (250)
T PRK11244 113 GILDFSHPLEPFEPFDLGGLQVTPLPLNHSKLTFGYLLET-AHSRVAYLTDTVGLPEDTL-KFLRNNQPDLLVLDCSHPP 190 (250)
T ss_pred cccccccccCCCCCeeECCEEEEEEeeCCCcceeEEEEec-CCeEEEEEcCCCCCCHHHH-HHHhcCCCCEEEEeCcCCC
Confidence 1122 4578899999999999999999998999999996 6679999999987543221 2222357999999999975
Q ss_pred C
Q 012419 265 P 265 (464)
Q Consensus 265 ~ 265 (464)
.
T Consensus 191 ~ 191 (250)
T PRK11244 191 Q 191 (250)
T ss_pred C
Confidence 4
No 13
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.72 E-value=9.7e-17 Score=155.24 Aligned_cols=173 Identities=21% Similarity=0.142 Sum_probs=114.6
Q ss_pred cCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc----CCCCcEEeCHHHHHHHHHhhccC
Q 012419 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR----WSHGPIYCSPLTARLVRMCLLVN 186 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~----~~~~~Iy~s~~t~~~l~~~~~~~ 186 (464)
.++..+++|||..... ..++ ..+||+|||||.|.||++||+.. ..+++||+++.+..+.. .+...
T Consensus 34 ~~~~~iliD~G~~~~~----~~~~------~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~-~~~~~ 102 (238)
T TIGR03307 34 FNGARTLIDAGLTDLA----ERFP------PGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDD-LFKHP 102 (238)
T ss_pred ECCcEEEEECCChhHh----hccC------ccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHH-HhcCc
Confidence 4667899999964311 1122 26899999999999999999642 24678999988754322 22211
Q ss_pred -CCce-EEcCCCCEEEECCEEEEEEEcCCCCCceEEEEEeeCCcEEEEECCCCCCccccccccccCCCccEEEEeCCCCC
Q 012419 187 -PSYI-HPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCN 264 (464)
Q Consensus 187 -~~~~-~~v~~~~~~~i~~~~v~~~~agH~~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~EsT~~~ 264 (464)
...+ ..+..++.+.+++++|+++++.|..++++|.|+. +|++++|+||+...++... ..+...++|+||+||++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~~g~~i~~-~~~~i~y~gDt~~~~~~~~-~~~~~~~~D~li~e~~~~~ 180 (238)
T TIGR03307 103 GILDFSKPLEAFEPFDLGGLRVTPLPLVHSKLTFGYLLET-DGQRVAYLTDTAGLPPDTE-AFLKNHPLDVLILDCSHPP 180 (238)
T ss_pred ccccccccccCCceEEECCEEEEEEecCCCCcceEEEEec-CCcEEEEEecCCCCCHHHH-HHHhcCCCCEEEEeCCcCc
Confidence 1122 3477899999999999999999988899999996 6779999999976543321 1222247999999999974
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeccc
Q 012419 265 PKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYS 301 (464)
Q Consensus 265 ~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s 301 (464)
..... ..+...+++++.+++. +.+ ++++..++
T Consensus 181 ~~~~~-~~H~~~~~~~~~~~~~---~~~-~lil~H~~ 212 (238)
T TIGR03307 181 QSDAP-RNHNDLTRALAINEQL---RPK-QVILTHIS 212 (238)
T ss_pred cccCC-CCcCCHHHHHHHHHHc---CCC-EEEEEecc
Confidence 32211 1122334444443322 333 46666664
No 14
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.71 E-value=1.3e-17 Score=166.44 Aligned_cols=145 Identities=23% Similarity=0.219 Sum_probs=106.2
Q ss_pred cCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc---------CCCCcEEeCHHHHHHHHH
Q 012419 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---------WSHGPIYCSPLTARLVRM 181 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~---------~~~~~Iy~s~~t~~~l~~ 181 (464)
.++..+++|||......-....+ ...++++|||||.|.||++||+.. ...++||+++.+.+.++.
T Consensus 25 ~~~~~iLiD~G~g~~~~l~~~~~------~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~ 98 (299)
T TIGR02651 25 LNGELWLFDCGEGTQRQMLRSGI------SPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIET 98 (299)
T ss_pred ECCeEEEEECCHHHHHHHHHcCC------CHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHHH
Confidence 45678999999743110000111 225799999999999999999842 125689999999887765
Q ss_pred hhcc---C---CCceEEcCCCC-EEEECCEEEEEEEcCCCCCceEEEEEeeC----------------------------
Q 012419 182 CLLV---N---PSYIHPLELNT-EHVIDGVKVTLLEANHCPGAALIHFRLQD---------------------------- 226 (464)
Q Consensus 182 ~~~~---~---~~~~~~v~~~~-~~~i~~~~v~~~~agH~~gs~~~~i~~~~---------------------------- 226 (464)
.+.. . ...+.++..++ .+.+++++|+++++.|...+++|.|+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~ 178 (299)
T TIGR02651 99 SLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLDHSIPSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGE 178 (299)
T ss_pred HHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEcCCCCceEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCC
Confidence 4321 1 12456788887 58889999999999998889999998631
Q ss_pred ---------------------CcEEEEECCCCCCccccccccccCCCccEEEEeCCCCCC
Q 012419 227 ---------------------GQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNP 265 (464)
Q Consensus 227 ---------------------g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~EsT~~~~ 265 (464)
|++++|+||++..+... .. ..++|+||+||||...
T Consensus 179 ~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~--~~--~~~~dlLi~E~~~~~~ 234 (299)
T TIGR02651 179 TVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEVI--EF--AKNADLLIHEATFLDE 234 (299)
T ss_pred eEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHHHH--HH--HcCCCEEEEECCCCch
Confidence 46899999999865432 22 2689999999999864
No 15
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.71 E-value=2.5e-17 Score=165.15 Aligned_cols=142 Identities=18% Similarity=0.065 Sum_probs=105.8
Q ss_pred CceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc---------CCCCcEEeCHHHHHHHHHhh
Q 012419 113 KKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---------WSHGPIYCSPLTARLVRMCL 183 (464)
Q Consensus 113 ~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~---------~~~~~Iy~s~~t~~~l~~~~ 183 (464)
...+++|||......-....++ ..+||+|||||.|.||++||+.. ...++||+++.+.+.+...+
T Consensus 30 ~~~iLiD~G~g~~~~l~~~~i~------~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~ 103 (303)
T TIGR02649 30 SGLWLFDCGEGTQHQLLHTAFN------PGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL 103 (303)
T ss_pred CCEEEEECCccHHHHHHHhCCC------HHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHH
Confidence 4689999998542110111122 26899999999999999999841 13578999999988776543
Q ss_pred cc------CCCceEEcCCCCEEEECCEEEEEEEcCCCCCceEEEEEee--------------------------------
Q 012419 184 LV------NPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQ-------------------------------- 225 (464)
Q Consensus 184 ~~------~~~~~~~v~~~~~~~i~~~~v~~~~agH~~gs~~~~i~~~-------------------------------- 225 (464)
.. .+..++.+..++.+..++++|+++++.|...+++|.|+..
T Consensus 104 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~H~~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~ 183 (303)
T TIGR02649 104 RISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTIT 183 (303)
T ss_pred HhcccccCCceEEEEcCCCceEecCCeEEEEEEccCccceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEE
Confidence 21 1234677888888888899999999999889999999852
Q ss_pred -----------------CCcEEEEECCCCCCccccccccccCCCccEEEEeCCCCC
Q 012419 226 -----------------DGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCN 264 (464)
Q Consensus 226 -----------------~g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~EsT~~~ 264 (464)
.|++|+|+||++..+... .. ..++|+||+||||.+
T Consensus 184 ~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~--~~--~~~adlLi~Eat~~~ 235 (303)
T TIGR02649 184 LEDGRQINGADYLAAPVPGKALAIFGDTGPCDAAL--DL--AKGVDVMVHEATLDI 235 (303)
T ss_pred eCCCcEEcHHHeeCCCCCCcEEEEecCCCChHHHH--HH--hcCCCEEEEeccCCh
Confidence 356899999999864432 22 379999999999975
No 16
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.66 E-value=9.2e-16 Score=153.34 Aligned_cols=147 Identities=15% Similarity=0.104 Sum_probs=102.7
Q ss_pred cCCceeEEcCCCCCC--CCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc--CCCCcEEeCHHHHHHHHHh--hc
Q 012419 111 HLKKIVDRSCPFYKK--IPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR--WSHGPIYCSPLTARLVRMC--LL 184 (464)
Q Consensus 111 ~~~~~~lidcG~~~~--~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~--~~~~~Iy~s~~t~~~l~~~--~~ 184 (464)
.++..+|+|||...+ ..... .+-+..-..+.+||+|||||.|.||++||+.+ ...++||+++.|.+.++.. +.
T Consensus 46 ~g~~~iLID~Gpd~r~ql~~~~-~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~~lpVya~~~t~~~L~~~~~~~ 124 (302)
T TIGR02108 46 DGERWVLLNASPDIRQQIQATP-ALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQPFTLYATEMVLQDLSDNPIFN 124 (302)
T ss_pred CCCEEEEEECCHHHHHHHHhCc-ccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCCCceEEECHHHHHHHHhCCCcc
Confidence 355689999998432 11111 11111111237899999999999999999853 3578999999999988641 11
Q ss_pred c-C--CCceEEcCCCCEEEEC-----CEEEEEEEcC--------C------CCCceEEEEEeeC--CcEEEEECCCCCCc
Q 012419 185 V-N--PSYIHPLELNTEHVID-----GVKVTLLEAN--------H------CPGAALIHFRLQD--GQCYLHTGDFRASR 240 (464)
Q Consensus 185 ~-~--~~~~~~v~~~~~~~i~-----~~~v~~~~ag--------H------~~gs~~~~i~~~~--g~~ilytGD~~~~~ 240 (464)
. . ....++++.++++.++ +++|++|++. | ...+++|+|+. + |++++|++|++..+
T Consensus 125 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~-~~~g~~~~y~tD~g~~~ 203 (302)
T TIGR02108 125 VLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIED-GTTGKRLFYIPGCAEIT 203 (302)
T ss_pred ccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEe-CCCCcEEEEECCCCCCC
Confidence 1 1 1123567888888774 5999999998 5 13689999996 5 78999999998655
Q ss_pred cccccccccCCCccEEEEeCCC
Q 012419 241 LMQSYPLLVNHRVNVLYLDTTY 262 (464)
Q Consensus 241 ~~~~~~~l~~~~~DlLi~EsT~ 262 (464)
+... ..+ .++|+||+||+|
T Consensus 204 ~~~~-~~l--~~~d~liida~~ 222 (302)
T TIGR02108 204 DDLK-ARM--AGADLVFFDGTL 222 (302)
T ss_pred HHHH-HHH--hCCCEEEEeCCC
Confidence 4332 223 679999999994
No 17
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=99.65 E-value=1.1e-15 Score=130.40 Aligned_cols=106 Identities=53% Similarity=0.870 Sum_probs=88.8
Q ss_pred ccccCccccCCCceEEEEeCCCCChhhHHHHHhhhCCCCCCEEEEeeccccccCCcccccccccc--CCCCCEEEEeEec
Q 012419 336 ELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRP--LSRGNITIYGVPY 413 (464)
Q Consensus 336 ~~~~~~~~~~~~~~V~v~~~~~l~~g~~~~~l~~~~~~~~~~i~~~~tG~~~~~~~g~~l~~~~~--~~~g~~~i~~i~~ 413 (464)
++...+|+++.++.||+++.+.++...+..+++.+...+..+|.|+||||......+.......+ ..++++.+|.|||
T Consensus 2 e~~~~~T~d~~~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~~~~~~~~~~~~~~~~~VPY 81 (110)
T PF07522_consen 2 ELSSLFTTDPSETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSVSISPSLQSRGNVRIYRVPY 81 (110)
T ss_pred chhceeecCCCCCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccccCCCccccccccccccCCCceEEEEec
Confidence 45567899999999999999999989999999999999999999999999876654433321222 1355788999999
Q ss_pred cCCCCHHHHHHHHHhcCCCeEEEecccC
Q 012419 414 SEHSSFTELREFVQFLRPDKIIPTVNVW 441 (464)
Q Consensus 414 S~Had~~eL~~~v~~l~Pk~ViP~~~hg 441 (464)
|.|||+.||++||+.++|++|||||.-+
T Consensus 82 SeHSSf~EL~~Fv~~l~P~~IiPtV~~~ 109 (110)
T PF07522_consen 82 SEHSSFSELKEFVSFLKPKKIIPTVNVS 109 (110)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEccccCC
Confidence 9999999999999999999999998754
No 18
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.64 E-value=9.2e-16 Score=142.59 Aligned_cols=139 Identities=23% Similarity=0.299 Sum_probs=100.0
Q ss_pred eeEEcCCCCCCCCCCc-eEecCCCcCCCCCccEEEeCccchhhhcCccc------cCCCCcEEeCHHHHHHHHH-hhcc-
Q 012419 115 IVDRSCPFYKKIPGTP-FTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGK------RWSHGPIYCSPLTARLVRM-CLLV- 185 (464)
Q Consensus 115 ~~lidcG~~~~~~~~~-~~id~f~~~~i~~id~I~iTH~H~DHiggL~~------~~~~~~Iy~s~~t~~~l~~-~~~~- 185 (464)
++|+|||......... ...... ..+.++|+|||||.|.||+.|++. .... +||+++.+.+.+.. .++.
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~--~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~ 78 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQEL--EDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGIL 78 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSS--SSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHH
T ss_pred EEEEeCCCCcccccccccccccc--cccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhcccc
Confidence 6899999853200000 000110 122489999999999999999763 1222 89999999998873 2221
Q ss_pred ------CCCceEEcCCCCEEEECCEEEEEEEcCCCCCceE----EEEEeeCCcEEEEECCCCCCccccccccccCCCccE
Q 012419 186 ------NPSYIHPLELNTEHVIDGVKVTLLEANHCPGAAL----IHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNV 255 (464)
Q Consensus 186 ------~~~~~~~v~~~~~~~i~~~~v~~~~agH~~gs~~----~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~Dl 255 (464)
....+..+..++.+++++++|+++++.|..++.+ |+|+. +|++|+|+||+.. . . ..+ .++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~~~~~~g~~i~~-~~~~i~~~gD~~~--~--~-~~~--~~~D~ 150 (194)
T PF12706_consen 79 DLYPEEDNFDIIEISPGDEFEIGDFRITPFPANHGPPSYGGNKGFVIEP-DGKKIFYSGDTNY--D--F-EEL--KNIDL 150 (194)
T ss_dssp TTCCTTSGEEEEEECTTEEEEETTEEEEEEEEESSSCCEEECCEEEEEE-TTEEEEEETSSSS--C--H-HHH--TTBSE
T ss_pred cccccccceeEEEeccCceEEeceEEEEEEeccccccccccCceEEEec-CCcceEEeeccch--h--h-hhh--ccCCE
Confidence 1234778888999999999999999999888877 99995 7889999999999 2 1 223 67999
Q ss_pred EEEeCCCCC
Q 012419 256 LYLDTTYCN 264 (464)
Q Consensus 256 Li~EsT~~~ 264 (464)
+|+||++..
T Consensus 151 li~~~~~~~ 159 (194)
T PF12706_consen 151 LILECGYID 159 (194)
T ss_dssp EEEEBCBSS
T ss_pred EEEeCCCcc
Confidence 999999984
No 19
>PRK02126 ribonuclease Z; Provisional
Probab=99.61 E-value=1.4e-14 Score=146.85 Aligned_cols=142 Identities=15% Similarity=0.077 Sum_probs=101.2
Q ss_pred CCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc-------CCCCcEEeCHHHHHHHHHhhc
Q 012419 112 LKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR-------WSHGPIYCSPLTARLVRMCLL 184 (464)
Q Consensus 112 ~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~-------~~~~~Iy~s~~t~~~l~~~~~ 184 (464)
++..+++|||... .. .. ..+.+|++|||||.|.||++|++.+ ...++||+++.+.+.++..+.
T Consensus 26 ~~~~iLiD~G~~~---~l---~~----~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~~ 95 (334)
T PRK02126 26 ERRALLFDLGDLH---HL---PP----RELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKLA 95 (334)
T ss_pred CCeEEEEcCCCHH---HH---hh----cCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHHhc
Confidence 4678999999711 11 11 1347899999999999999999852 135799999999998877654
Q ss_pred cC----------CCceEEcC----------------------------CCCEEEECCEEEEEEEcCCCCCceEEEEEee-
Q 012419 185 VN----------PSYIHPLE----------------------------LNTEHVIDGVKVTLLEANHCPGAALIHFRLQ- 225 (464)
Q Consensus 185 ~~----------~~~~~~v~----------------------------~~~~~~i~~~~v~~~~agH~~gs~~~~i~~~- 225 (464)
.. ...+..+. .+..+..++++|+++++.|...|++|.|+.+
T Consensus 96 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~vp~~gy~~~e~~ 175 (334)
T PRK02126 96 GYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHGIPCLAFALEEKA 175 (334)
T ss_pred cccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCCCceeEEEEEecC
Confidence 11 01122111 2333556899999999999888999999841
Q ss_pred -----------------------------------------------------------------CCcEEEEECCCCCCc
Q 012419 226 -----------------------------------------------------------------DGQCYLHTGDFRASR 240 (464)
Q Consensus 226 -----------------------------------------------------------------~g~~ilytGD~~~~~ 240 (464)
.|++|+|+||++..+
T Consensus 176 ~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT~~~~ 255 (334)
T PRK02126 176 HINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTDIGYTE 255 (334)
T ss_pred CcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECCCCCCc
Confidence 256899999999876
Q ss_pred ccc--ccccccCCCccEEEEeCCCCCC
Q 012419 241 LMQ--SYPLLVNHRVNVLYLDTTYCNP 265 (464)
Q Consensus 241 ~~~--~~~~l~~~~~DlLi~EsT~~~~ 265 (464)
+.. .... ..++|+||+||||...
T Consensus 256 ~~~~~l~~~--a~~aDlLI~Eat~~~~ 280 (334)
T PRK02126 256 ENLARIVEL--AAGVDLLFIEAVFLDE 280 (334)
T ss_pred ccHHHHHHH--HcCCCEEEEEcccChH
Confidence 421 1121 3789999999999864
No 20
>PRK02113 putative hydrolase; Provisional
Probab=99.60 E-value=5.3e-15 Score=144.21 Aligned_cols=168 Identities=18% Similarity=0.142 Sum_probs=114.3
Q ss_pred cCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc-----CCCCcEEeCHHHHHHHHHhhcc
Q 012419 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR-----WSHGPIYCSPLTARLVRMCLLV 185 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~-----~~~~~Iy~s~~t~~~l~~~~~~ 185 (464)
.++..+++|||......-.. . ...++|+|||||.|.||++||+.. ...++||+++.+.+.+......
T Consensus 42 ~~~~~iLiD~G~g~~~~l~~--~------~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~ 113 (252)
T PRK02113 42 TEGARILIDCGPDFREQMLR--L------PFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMPY 113 (252)
T ss_pred ECCeEEEEECCchHHHHHHh--c------CccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCCe
Confidence 46778999999743210000 1 236899999999999999999842 3467999999998887654321
Q ss_pred ----------CCCceEEcCCCCEEEECCEEEEEEEcCCC-CCceEEEEEeeCCcEEEEECCCCCCccccccccccCCCcc
Q 012419 186 ----------NPSYIHPLELNTEHVIDGVKVTLLEANHC-PGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVN 254 (464)
Q Consensus 186 ----------~~~~~~~v~~~~~~~i~~~~v~~~~agH~-~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~D 254 (464)
....++.+++++++.+++++|+++++.|. ..+++|.+ + +++|+||+...++... .. ..++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~H~~~~~~gy~i----~-~i~y~~Dt~~~~~~~~-~~--~~~~D 185 (252)
T PRK02113 114 CFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVMHGKLPILGYRI----G-KMAYITDMLTMPEEEY-EQ--LQGID 185 (252)
T ss_pred eeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEecCCCccEEEEEe----C-CEEEccCCCCCCHHHH-HH--hcCCC
Confidence 11347788899999999999999999995 45788888 2 6999999986544322 22 36899
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccc
Q 012419 255 VLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSI 302 (464)
Q Consensus 255 lLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~ 302 (464)
+||+|+++......|.+. ++.++.++++ +.+ .+++..++.
T Consensus 186 lLi~e~~~~~~~~~H~t~----~~a~~~~~~~---~~k-~l~l~H~s~ 225 (252)
T PRK02113 186 VLVMNALRIAPHPTHQSL----EEALENIKRI---GAK-ETYLIHMSH 225 (252)
T ss_pred EEEEhhhcCCCCCCcCCH----HHHHHHHHHh---CCC-EEEEEcccc
Confidence 999999874332223333 3334433332 333 455656543
No 21
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.60 E-value=1.8e-14 Score=144.37 Aligned_cols=148 Identities=14% Similarity=0.050 Sum_probs=101.4
Q ss_pred CCceeEEcCCCCCCCCCCce-EecCCCcCCCCCccEEEeCccchhhhcCcccc--CCCCcEEeCHHHHHHHHHhhc---c
Q 012419 112 LKKIVDRSCPFYKKIPGTPF-TVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR--WSHGPIYCSPLTARLVRMCLL---V 185 (464)
Q Consensus 112 ~~~~~lidcG~~~~~~~~~~-~id~f~~~~i~~id~I~iTH~H~DHiggL~~~--~~~~~Iy~s~~t~~~l~~~~~---~ 185 (464)
+...++||||......-... ..++.....+.+||+|||||.|.||++||+.+ ...++||+++.+.+.+...+. .
T Consensus 48 g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~~~l~Vyg~~~~~~~l~~~~~~f~~ 127 (302)
T PRK05184 48 GEDWVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREGQPFPVYATPAVLEDLSTGFPIFNV 127 (302)
T ss_pred CCEEEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccCCCeEEEeCHHHHHHHHhcCCcccc
Confidence 33468999997532100000 01111111336899999999999999999864 357899999999988765321 1
Q ss_pred ----CCCceEEcCCCCEEEEC---CEEEEEEEcCC-------------CCCceEEEEE-eeCCcEEEEECCCCCCccccc
Q 012419 186 ----NPSYIHPLELNTEHVID---GVKVTLLEANH-------------CPGAALIHFR-LQDGQCYLHTGDFRASRLMQS 244 (464)
Q Consensus 186 ----~~~~~~~v~~~~~~~i~---~~~v~~~~agH-------------~~gs~~~~i~-~~~g~~ilytGD~~~~~~~~~ 244 (464)
....++++..+++++++ +++|+++++.| ...+++|+|+ ..+|++++|++|+...++..
T Consensus 128 ~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~~~- 206 (302)
T PRK05184 128 LDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTDAL- 206 (302)
T ss_pred cccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCHHH-
Confidence 11246678888899986 89999999975 3468999995 23677899998874433322
Q ss_pred cccccCCCccEEEEeCCC
Q 012419 245 YPLLVNHRVNVLYLDTTY 262 (464)
Q Consensus 245 ~~~l~~~~~DlLi~EsT~ 262 (464)
... ..++|+||+||++
T Consensus 207 ~~~--~~gaDlli~da~~ 222 (302)
T PRK05184 207 RAR--LAGADCVLFDGTL 222 (302)
T ss_pred HHH--HhcCCEEEEeCCC
Confidence 122 3689999999985
No 22
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.55 E-value=1.5e-13 Score=131.64 Aligned_cols=137 Identities=20% Similarity=0.162 Sum_probs=99.0
Q ss_pred cCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc--CCCCcEEeCHHHHHHHHHhhccCCC
Q 012419 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR--WSHGPIYCSPLTARLVRMCLLVNPS 188 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~--~~~~~Iy~s~~t~~~l~~~~~~~~~ 188 (464)
.++..+++||+.... +.. .+.... .++|+|||||.|.||++++... ....+||+++.+.+.++.. +. .
T Consensus 15 ~~~~~iLiDP~~~~~-~~~-----~~~~~~-~~id~vliTH~H~DH~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~--~ 84 (228)
T PRK00685 15 TGGKKILIDPFITGN-PLA-----DLKPED-VKVDYILLTHGHGDHLGDTVEIAKRTGATVIANAELANYLSEK-GV--E 84 (228)
T ss_pred ECCEEEEECCCCCCC-CCC-----CCChhc-CcccEEEeCCCCccccccHHHHHHhCCCEEEEeHHHHHHHHhc-CC--C
Confidence 356688999866321 111 111122 3899999999999999987753 3467899999887766532 22 2
Q ss_pred ceEEcCCCCEEEECCEEEEEEEcCCCCC------------ceEEEEEeeCCcEEEEECCCCCCccccccccccCCCccEE
Q 012419 189 YIHPLELNTEHVIDGVKVTLLEANHCPG------------AALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVL 256 (464)
Q Consensus 189 ~~~~v~~~~~~~i~~~~v~~~~agH~~g------------s~~~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~DlL 256 (464)
++..++.++.+++++++|+++++.|... +.+|+|+. ++++|+|+||+.+.++...... ..++|++
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~-~~~~i~~~GDt~~~~~~~~~~~--~~~~D~~ 161 (228)
T PRK00685 85 KTHPMNIGGTVEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITF-EGKTIYHAGDTGLFSDMKLIGE--LHKPDVA 161 (228)
T ss_pred ceeeccCCCcEEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEE-CCeEEEEecCccchhHHHHHHH--hhCCCEE
Confidence 5678899999999999999999999443 58999997 5679999999998765432221 2468999
Q ss_pred EEeC
Q 012419 257 YLDT 260 (464)
Q Consensus 257 i~Es 260 (464)
++..
T Consensus 162 ~~~~ 165 (228)
T PRK00685 162 LLPI 165 (228)
T ss_pred EEec
Confidence 9875
No 23
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.54 E-value=2.6e-14 Score=142.33 Aligned_cols=197 Identities=16% Similarity=0.145 Sum_probs=110.4
Q ss_pred cCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc---------CCCCcEEeCHHHHHHHHH
Q 012419 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---------WSHGPIYCSPLTARLVRM 181 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~---------~~~~~Iy~s~~t~~~l~~ 181 (464)
.++..+|+|||......-....+.+ .+|++|||||.|.||+.||+.+ .....||.++..++.+..
T Consensus 27 ~~~~~~L~DcGeGt~~~l~~~~~~~------~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~~ 100 (292)
T COG1234 27 LEGEKFLFDCGEGTQHQLLRAGLPP------RKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVET 100 (292)
T ss_pred eCCeeEEEECCHhHHHHHHHhcCCh------hhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhhhh
Confidence 4778889999975421111122222 5899999999999999999831 123689999887776655
Q ss_pred hhccCC------CceEEcCC---------------------CCEEEEC------------CEEEEEEEcCCC----CCce
Q 012419 182 CLLVNP------SYIHPLEL---------------------NTEHVID------------GVKVTLLEANHC----PGAA 218 (464)
Q Consensus 182 ~~~~~~------~~~~~v~~---------------------~~~~~i~------------~~~v~~~~agH~----~gs~ 218 (464)
.+.... ...+.+.. .+....+ +..++.+.++|. .-..
T Consensus 101 ~~~~~~~~~~~~i~~~e~~~~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~~~~~~~~g~~~~~l~~~h~~~~~~~~~ 180 (292)
T COG1234 101 SLRLSYSKLTYEIIGHEIEEDAFEVEALELDHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLITALKAGHPVEERVITP 180 (292)
T ss_pred hhhhcccccceEEEEEEeccCceEEEEEecCCCccccceeeecCCCcCcCCHHHhcCCCCchHHHHHhCCCceeeeecCH
Confidence 432110 01111110 0000111 456777777886 3333
Q ss_pred EEEEEee-CCcEEEEECCCCCCccccccccccCCCccEEEEeCCCCCCCCCCCC-H-HHHHHHHHHHHHHHHHhCCCeEE
Q 012419 219 LIHFRLQ-DGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPS-K-EDVLNYVVRLTKNCLKKQPKTLV 295 (464)
Q Consensus 219 ~~~i~~~-~g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~EsT~~~~~~~~p~-~-~~~~~~l~~~i~~~l~~~~~~~v 295 (464)
.+.+..+ .|++|+||||++........ .+++|+||+||||.+....... . +...++..++.+++ +-+ .+
T Consensus 181 ~~~~~~~~~G~~v~ysGDT~p~~~~~~~----a~~aDlLiHEat~~~~~~~~a~~~~HsT~~eAa~iA~~A---~vk-~L 252 (292)
T COG1234 181 ADRIGEPRKGKSVVYSGDTRPCDELIDL----AKGADLLIHEATFEDDLEDLANEGGHSTAEEAAEIAKEA---GVK-KL 252 (292)
T ss_pred HHhccccCCCcEEEEECCCCCCHHHHHH----hcCCCEEEEeccCCchhhhHHhhcCCCCHHHHHHHHHHc---CCC-eE
Confidence 3333322 35799999999998875521 3899999999999764321111 1 33344455444332 333 45
Q ss_pred EEecccccH---HHHHHHHHH-HcCCeEEE
Q 012419 296 VVGAYSIGK---ESVFLAISK-ALGVKIYA 321 (464)
Q Consensus 296 li~~~s~Gr---~qell~l~~-~~~~~I~v 321 (464)
++..|+--. ..+++..++ .+.-++.+
T Consensus 253 iLtH~s~ry~~~~~~~~~ea~~~f~~~~~~ 282 (292)
T COG1234 253 ILTHFSPRYPKDDEELLKEARAIFPGETIV 282 (292)
T ss_pred EEEeecccccchHHHHHHHHHHhCCCceEE
Confidence 555554322 334444443 34334444
No 24
>PRK00055 ribonuclease Z; Reviewed
Probab=99.50 E-value=1.7e-14 Score=141.41 Aligned_cols=142 Identities=19% Similarity=0.144 Sum_probs=86.8
Q ss_pred cCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc---------CCCCcEEeCHHHHHHHHH
Q 012419 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---------WSHGPIYCSPLTARLVRM 181 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~---------~~~~~Iy~s~~t~~~l~~ 181 (464)
.++..+++|||......-....+ ...+||+|||||.|.||++||+.+ ...++||+++.+.+.+..
T Consensus 27 ~~~~~iLiD~G~g~~~~l~~~~~------~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~ 100 (270)
T PRK00055 27 LGGELFLFDCGEGTQRQLLKTGI------KPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVET 100 (270)
T ss_pred ECCcEEEEECCHHHHHHHHHcCC------CHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHHH
Confidence 56788999999743110000111 236899999999999999999842 135679999998877654
Q ss_pred hhccCCC---ceE------E----------cCCCCEE-EE-CCEEEEEEEcCC--CCCceEEEEEeeCCcEEEEECCCCC
Q 012419 182 CLLVNPS---YIH------P----------LELNTEH-VI-DGVKVTLLEANH--CPGAALIHFRLQDGQCYLHTGDFRA 238 (464)
Q Consensus 182 ~~~~~~~---~~~------~----------v~~~~~~-~i-~~~~v~~~~agH--~~gs~~~~i~~~~g~~ilytGD~~~ 238 (464)
.+..... .+. . +..+..+ .+ .+.++.. .+| +..+.+|.++. +|++|+|+||+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~i~~~~~~~~~~-~g~~~~y~~Dt~~ 177 (270)
T PRK00055 101 LLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLKRGEDVTL--EDGRIINPADVLGPPR-KGRKVAYCGDTRP 177 (270)
T ss_pred HHHHhhceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhhCCCeEEe--CCCcEEeHHHeeccCC-CCcEEEEeCCCCC
Confidence 3321100 000 0 0011110 01 1222222 233 33678888885 6779999999998
Q ss_pred CccccccccccCCCccEEEEeCCCCCC
Q 012419 239 SRLMQSYPLLVNHRVNVLYLDTTYCNP 265 (464)
Q Consensus 239 ~~~~~~~~~l~~~~~DlLi~EsT~~~~ 265 (464)
.+... .. ..++|+||+||+|...
T Consensus 178 ~~~~~--~~--~~~~d~li~E~~~~~~ 200 (270)
T PRK00055 178 CEALV--EL--AKGADLLVHEATFGDE 200 (270)
T ss_pred cHHHH--HH--hCCCCEEEEeccCCcc
Confidence 65422 22 2689999999999865
No 25
>PRK04286 hypothetical protein; Provisional
Probab=99.49 E-value=1.6e-13 Score=137.18 Aligned_cols=221 Identities=11% Similarity=0.126 Sum_probs=124.8
Q ss_pred cccccccCCC---cccc--cCCceeEEcCCCCC--C---CCCCceEec----CC--CcCCCCCccEEEeCccchhhhcCc
Q 012419 97 MKKLKASNGK---STAT--HLKKIVDRSCPFYK--K---IPGTPFTVD----AF--RYGSIKGCSAYFLTHFHYDHYGGL 160 (464)
Q Consensus 97 ~~~l~~g~~~---~~~~--~~~~~~lidcG~~~--~---~~~~~~~id----~f--~~~~i~~id~I~iTH~H~DHiggL 160 (464)
+..+++|+.+ +|.+ .++..+|||+|... + .+..+.... .. -...+.+||+|||||.|.||++++
T Consensus 3 ~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~ 82 (298)
T PRK04286 3 IIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPF 82 (298)
T ss_pred EEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCc
Confidence 4557777776 5555 68889999999642 1 111110000 00 002347899999999999999887
Q ss_pred ccc-------CCCCcEEeCHHHHHH-----HH--Hh-----h-c-cC-CCceEEcCCCCEEEECCEEEEEE-EcCCC-C-
Q 012419 161 GKR-------WSHGPIYCSPLTARL-----VR--MC-----L-L-VN-PSYIHPLELNTEHVIDGVKVTLL-EANHC-P- 215 (464)
Q Consensus 161 ~~~-------~~~~~Iy~s~~t~~~-----l~--~~-----~-~-~~-~~~~~~v~~~~~~~i~~~~v~~~-~agH~-~- 215 (464)
... ....+||.+..+... +. .. + . +. ......+..++.+.+++++|++. +..|. +
T Consensus 83 ~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~ 162 (298)
T PRK04286 83 YEDPYELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADG 162 (298)
T ss_pred cccccccccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCC
Confidence 643 123566766444311 00 00 0 0 00 11235567889999999999976 77994 3
Q ss_pred CceEE----EEEeeCCcEEEEECCCC-CCccccccccccCCCccEEEEeCC--CCC-CCCCCCCHHHHHHHHHHHHHHHH
Q 012419 216 GAALI----HFRLQDGQCYLHTGDFR-ASRLMQSYPLLVNHRVNVLYLDTT--YCN-PKYKFPSKEDVLNYVVRLTKNCL 287 (464)
Q Consensus 216 gs~~~----~i~~~~g~~ilytGD~~-~~~~~~~~~~l~~~~~DlLi~EsT--~~~-~~~~~p~~~~~~~~l~~~i~~~l 287 (464)
.+++| .|+. +|++++|+||+. ...+... ..+...++|+|++++. |.. +...+...+.+.+.+ .+.+
T Consensus 163 ~~~Gy~i~~ri~~-gg~~~~~~gDt~~~~~~~~~-~~l~~~d~dlLi~~~~p~~lk~~ri~~~~~h~s~~~~----~~l~ 236 (298)
T PRK04286 163 SKLGYVIMVRISD-GDESFVFASDVQGPLNDEAV-EFILEKKPDVVIIGGPPTYLLGRRLSEEDLEKGIENL----EEIV 236 (298)
T ss_pred CccceEEEEEEEe-CCEEEEEECCCCCCCCHHHH-HHHhcCCCCEEEeCCcchhhhhhhhccccHHHHHHHH----HHHH
Confidence 35555 4454 678999999998 3332221 2232358999999983 332 111122333443333 3444
Q ss_pred HhCCCeEEEEe-cccc--c---HHHHHHHHHHHcCCeEEEccc
Q 012419 288 KKQPKTLVVVG-AYSI--G---KESVFLAISKALGVKIYANAS 324 (464)
Q Consensus 288 ~~~~~~~vli~-~~s~--G---r~qell~l~~~~~~~I~v~~~ 324 (464)
+.+.+ .+++. .-+. . ..+++.+.++..+++++....
T Consensus 237 ~~~~k-~liLtHHls~~~n~~~~~~~l~~~~~~~~~~~~~~~~ 278 (298)
T PRK04286 237 KNTPE-TLILDHHLLRDKNYREKLKELYERAEDRGVRVLTAAE 278 (298)
T ss_pred hcCCC-EEEEeccccccCCcHHHHHHHHHHHhhcCceEEeHHH
Confidence 44555 45555 2221 1 124455557777888886653
No 26
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.44 E-value=8.1e-13 Score=128.96 Aligned_cols=178 Identities=13% Similarity=-0.011 Sum_probs=112.9
Q ss_pred cCCceeEEc-CCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCccc----------cCCCCcEEeCHHHHHHH
Q 012419 111 HLKKIVDRS-CPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGK----------RWSHGPIYCSPLTARLV 179 (464)
Q Consensus 111 ~~~~~~lid-cG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~----------~~~~~~Iy~s~~t~~~l 179 (464)
-....++.| +|...... ..+.+..++.|||||+|.||++||+. ......||.++.+.+..
T Consensus 16 ~~~~~ilfD~ag~g~~~~---------l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~v 86 (277)
T TIGR02650 16 YSPEEIIFDAAEEGSSTL---------GGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAE 86 (277)
T ss_pred ECchhheehhhcccchhH---------HhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHH
Confidence 567788888 77643211 01134678999999999999999962 11235699999987776
Q ss_pred HHh---hcc------CCCceEEcCCCCEEEEC-C---EEEEEEEcCCCC---CceEEEEEe-------------------
Q 012419 180 RMC---LLV------NPSYIHPLELNTEHVID-G---VKVTLLEANHCP---GAALIHFRL------------------- 224 (464)
Q Consensus 180 ~~~---~~~------~~~~~~~v~~~~~~~i~-~---~~v~~~~agH~~---gs~~~~i~~------------------- 224 (464)
+.. +.. ....+.+++.++.+... + ..|+++++.|.. -|.+|.|..
T Consensus 87 e~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~ 166 (277)
T TIGR02650 87 EETSEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARL 166 (277)
T ss_pred HHHHHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHH
Confidence 622 221 12334556667777776 3 899999999974 477777731
Q ss_pred ------------eCCcEEEEECCCCCCccccccccccCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 012419 225 ------------QDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPK 292 (464)
Q Consensus 225 ------------~~g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~ 292 (464)
..+++|+||||+..... +. ..++|+||+||||.+........+....++.+..++ .+.+
T Consensus 167 l~~~gg~~~t~e~~~~~vvysGDT~~~~~----~~--a~~adlLIhEaTf~d~~~~~~~gH~t~~eaa~~A~~---a~vk 237 (277)
T TIGR02650 167 LKEEGGDDFTREEHHKILLIIGDDLAADD----EE--EEGGEELIHECCFFDDADDRRKKHAAADDEMEESKK---AAGK 237 (277)
T ss_pred HHHhCCccccccccCcEEEEeCCCCCCCh----HH--hcCCCEEEEecccccccccccCCCCCHHHHHHHHHH---cCCC
Confidence 01368999999988743 22 378999999999987543111112333444443332 2333
Q ss_pred eEEEEecccccHHHH
Q 012419 293 TLVVVGAYSIGKESV 307 (464)
Q Consensus 293 ~~vli~~~s~Gr~qe 307 (464)
.+++..|+.-+..+
T Consensus 238 -~LiLtH~Ssry~~~ 251 (277)
T TIGR02650 238 -KKIILHHISRRIIR 251 (277)
T ss_pred -EEEEEeecccccHH
Confidence 46666776655433
No 27
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.30 E-value=4.5e-12 Score=115.81 Aligned_cols=124 Identities=23% Similarity=0.225 Sum_probs=90.7
Q ss_pred cCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc--CCCCcEEeCHHHHHHHHHhh-----
Q 012419 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR--WSHGPIYCSPLTARLVRMCL----- 183 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~--~~~~~Iy~s~~t~~~l~~~~----- 183 (464)
.++..+++|||......... .+... ...+|++||+||.|.||++|++.. ..+.+||+++.+.+.+....
T Consensus 13 ~~~~~iliD~g~~~~~~~~~-~l~~~---~~~~i~~i~iTH~H~DH~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (183)
T smart00849 13 GDGGAILIDTGPGEAEDLLA-ELKKL---GPKDIDAIILTHGHPDHIGGLPELLEAPGAPVYAPEGTAELLKDLLKLGGA 88 (183)
T ss_pred eCCceEEEeCCCChhHHHHH-HHHHc---CchhhcEEEecccCcchhccHHHHHhCCCCcEEEchhhhHHHhccchhccc
Confidence 56778999999533110000 01111 137899999999999999999853 35788999999988775321
Q ss_pred ----ccCCCceEEcCCCCEEEECCEEEEEEEc-CCCCCceEEEEEeeCCcEEEEECCCCCCcc
Q 012419 184 ----LVNPSYIHPLELNTEHVIDGVKVTLLEA-NHCPGAALIHFRLQDGQCYLHTGDFRASRL 241 (464)
Q Consensus 184 ----~~~~~~~~~v~~~~~~~i~~~~v~~~~a-gH~~gs~~~~i~~~~g~~ilytGD~~~~~~ 241 (464)
......+..+..++++.+++.+++++++ +|+++++++.++. .+++|+||+.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~---~~vl~~gD~~~~~~ 148 (183)
T smart00849 89 LGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLPE---GKILFTGDLLFSGG 148 (183)
T ss_pred cCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEECC---CCEEEECCeeeccC
Confidence 1122456778899999999888888888 8999999988763 58999999987654
No 28
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.30 E-value=5.6e-12 Score=131.03 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=103.5
Q ss_pred eeecccCCCccc-cccCCCcccccccccCCCcccc-cCCceeEEcCCCCCCCCCCceEecCCCc-CCCCCccEEEeCccc
Q 012419 77 DMWGLKSNSESE-ANCLFSPPMKKLKASNGKSTAT-HLKKIVDRSCPFYKKIPGTPFTVDAFRY-GSIKGCSAYFLTHFH 153 (464)
Q Consensus 77 ~~w~~~~~~~~~-~~~~~~~~~~~l~~g~~~~~~~-~~~~~~lidcG~~~~~~~~~~~id~f~~-~~i~~id~I~iTH~H 153 (464)
.++|+|...+.. .|.+.. +. +-.|+..|+.. .++..++||||....... .++.+.. ....+||+|++||.|
T Consensus 6 ~v~~vg~~d~~~~~f~~~~--~~-~~~g~~~NsyLI~~~~~vLIDtg~~~~~~~---~~~~l~~~~~~~~Id~IilTH~H 79 (394)
T PRK11921 6 NVTWVGKIDWELRKFHGEE--YS-THRGSSYNSYLIKDEKTVLIDTVWQPFAKE---FVENLKKEIDLDKIDYIVANHGE 79 (394)
T ss_pred CeEEEeeecCCcceecceE--ee-cCCceEEEEEEEeCCCEEEEeCCCCCcHHH---HHHHHHhhcCcccCCEEEeCCCC
Confidence 378888887654 333321 11 33455555555 356689999996431111 1111100 123679999999999
Q ss_pred hhhhcCccc---cCCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCCEEEECCEEEEEEEc-C-CCCCceEEEEEeeCCc
Q 012419 154 YDHYGGLGK---RWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEA-N-HCPGAALIHFRLQDGQ 228 (464)
Q Consensus 154 ~DHiggL~~---~~~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~~~~i~~~~v~~~~a-g-H~~gs~~~~i~~~~g~ 228 (464)
.||+||++. ..++.+||+++.+.+.+...+.. ...+..++.|+.+.+++.+++++++ + |+||+++++++. .
T Consensus 80 ~DHiggl~~l~~~~p~a~V~~~~~~~~~l~~~~~~-~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~~---~ 155 (394)
T PRK11921 80 IDHSGALPELMKEIPDTPIYCTKNGAKSLKGHYHQ-DWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLTG---D 155 (394)
T ss_pred CchhhHHHHHHHHCCCCEEEECHHHHHHHHHHhCC-CCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEcC---C
Confidence 999999985 34578999999988877644331 2346778999999999999999987 4 999999988863 3
Q ss_pred EEEEECCC
Q 012419 229 CYLHTGDF 236 (464)
Q Consensus 229 ~ilytGD~ 236 (464)
+++||||+
T Consensus 156 ~vLFsgD~ 163 (394)
T PRK11921 156 NILFSNDA 163 (394)
T ss_pred CEEEecCc
Confidence 69999997
No 29
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.24 E-value=1.4e-11 Score=130.90 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=105.0
Q ss_pred eeecccCCCccccccCCCcccccccccCCCcccc-cCCceeEEcCCCCCCCCCCceEecCCCc-CCCCCccEEEeCccch
Q 012419 77 DMWGLKSNSESEANCLFSPPMKKLKASNGKSTAT-HLKKIVDRSCPFYKKIPGTPFTVDAFRY-GSIKGCSAYFLTHFHY 154 (464)
Q Consensus 77 ~~w~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~lidcG~~~~~~~~~~~id~f~~-~~i~~id~I~iTH~H~ 154 (464)
.++|+|-..+......+ ..+. +-.|++.|+.. .++..++||+|....... .+..... ....+|++|++||.|.
T Consensus 8 ~vy~vg~~d~~~~~F~~-~~~~-~~~G~t~NsYLI~~~~~vLIDtg~~~~~~~---~l~~l~~~~~~~~Id~IilTH~H~ 82 (479)
T PRK05452 8 NIHWVGQRDWEVRDFHG-TEYK-TLRGSSYNSYLIREEKNVLIDTVDHKFSRE---FVQNLRNEIDLADIDYIVINHAEE 82 (479)
T ss_pred CeEEEeeecCCcccccc-ceee-cCCCcEEEEEEEECCCEEEEeCCCcccHHH---HHHHHHhcCCHhhCCEEEeCCCCc
Confidence 47888887766533332 1121 34666666655 356789999995321111 0111000 0226899999999999
Q ss_pred hhhcCcccc---CCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCCEEEEC-CEEEEEEEc--CCCCCceEEEEEeeCCc
Q 012419 155 DHYGGLGKR---WSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVID-GVKVTLLEA--NHCPGAALIHFRLQDGQ 228 (464)
Q Consensus 155 DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~~~~i~-~~~v~~~~a--gH~~gs~~~~i~~~~g~ 228 (464)
||+|+++.+ .++.+||+++.+...+..........++.++.|+.+.++ +.+++++++ +|.||+++++++. .
T Consensus 83 DH~Ggl~~Ll~~~p~a~V~~s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~~---~ 159 (479)
T PRK05452 83 DHAGALTELMAQIPDTPIYCTANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTG---D 159 (479)
T ss_pred chhchHHHHHHHCCCCEEEECHHHHHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEcC---C
Confidence 999999853 357899999999887765443333457889999999998 578999988 4999999998873 3
Q ss_pred EEEEECCC
Q 012419 229 CYLHTGDF 236 (464)
Q Consensus 229 ~ilytGD~ 236 (464)
+++||||.
T Consensus 160 ~vLFsgD~ 167 (479)
T PRK05452 160 AVLFSNDA 167 (479)
T ss_pred CEEEeccc
Confidence 69999996
No 30
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.20 E-value=1.6e-10 Score=114.32 Aligned_cols=191 Identities=18% Similarity=0.181 Sum_probs=129.9
Q ss_pred cCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCccccC---CCCcEEeCHHHHHHHHHhhccCC
Q 012419 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW---SHGPIYCSPLTARLVRMCLLVNP 187 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~~---~~~~Iy~s~~t~~~l~~~~~~~~ 187 (464)
.+....++|.|.. .+...+++.++...+.+||.+++||.|.||+||++... .-..+|+...........+....
T Consensus 61 ~~~~~~l~dtg~~---~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~~~~~~~~ 137 (293)
T COG2333 61 SEGKTILYDTGNS---MGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDSTSTFVLRDAG 137 (293)
T ss_pred eCCceEEeecCcc---cCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEEeCCCCccchhhhhhcC
Confidence 3444777888864 23345777777788999999999999999999998532 22245554333221111122223
Q ss_pred CceEEcCCCCEEEECCEEEEEEEc-CCC-----CCceEEEEEeeCCcEEEEECCCCCCccccccccccCCCccEEEEeCC
Q 012419 188 SYIHPLELNTEHVIDGVKVTLLEA-NHC-----PGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTT 261 (464)
Q Consensus 188 ~~~~~v~~~~~~~i~~~~v~~~~a-gH~-----~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~EsT 261 (464)
........|+.+.++++.++++.. +.. -.|+.++++. ++.++++|||.....+..........++|+|
T Consensus 138 ~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~-g~~s~LlTGD~e~~~E~~l~~~~~~l~~dVL----- 211 (293)
T COG2333 138 IPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTF-GGNSFLLTGDLEEKGEKLLKKYGPDLRADVL----- 211 (293)
T ss_pred CceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEe-CCeeEEEecCCCchhHHHHHhhCCCccceEE-----
Confidence 446677889999999999998865 342 2589999997 6679999999987655332221122457888
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccccH-------HHHHHHHHHHcCCeEEEcc
Q 012419 262 YCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGK-------ESVFLAISKALGVKIYANA 323 (464)
Q Consensus 262 ~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~Gr-------~qell~l~~~~~~~I~v~~ 323 (464)
...+|.++......|++.++ |+ ++.+|.|+ .+++++.+++.++++|-..
T Consensus 212 ---kV~HHGS~tSss~~Fl~~v~------Pk----~AliS~G~~N~yghPh~~Vl~rl~~~~~~v~rTd 267 (293)
T COG2333 212 ---KVGHHGSKTSSSLAFLEAVK------PK----VALISSGRNNRYGHPHQEVLERLQKRGIKVYRTD 267 (293)
T ss_pred ---EeccCCccccCcHHHHHhcC------Cc----EEEEEeeccCCCCCCcHHHHHHHHhcCCeEEecC
Confidence 44567888888888887764 66 23456677 4888999999999888553
No 31
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.10 E-value=1.8e-09 Score=105.87 Aligned_cols=166 Identities=16% Similarity=0.063 Sum_probs=113.4
Q ss_pred ccceeeeecccCCCccccccCCCcccccccccCCCcccccCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCc
Q 012419 72 QANLFDMWGLKSNSESEANCLFSPPMKKLKASNGKSTATHLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTH 151 (464)
Q Consensus 72 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH 151 (464)
+...+++||+|+.+.++++-+ .+.+++.+.+.......... ..+++ .+..+|+|+|||
T Consensus 3 ~~~~m~itwlGha~~lie~~~-~~iliDP~~~~~~~~~~~~~------------------~~~~~---~~~~~D~ilitH 60 (258)
T COG2220 3 SAEDMKITWLGHAAFLIETGG-KRILIDPVLSGAPSPSNFPG------------------GLFED---LLPPIDYILITH 60 (258)
T ss_pred CCcCceEEEecceEEEEEECC-EEEEECcccCCCCCcccccC------------------cCChh---hcCCCCEEEEeC
Confidence 567789999999998888666 55555555543222222111 01111 236799999999
Q ss_pred cchhhhcCcc--ccC-CCCcEEeCHHHHHHHHHhhccCCCceEEcCCCCEEEECCEEEEEEEcCCCC-------------
Q 012419 152 FHYDHYGGLG--KRW-SHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCP------------- 215 (464)
Q Consensus 152 ~H~DHiggL~--~~~-~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~~~~i~~~~v~~~~agH~~------------- 215 (464)
.|.||+..-. ... ...+++..+.....+....+.....+..+..++.+++++++|+++++-|..
T Consensus 61 ~H~DHl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~ 140 (258)
T COG2220 61 DHYDHLDDETLIALRTNKAPVVVVPLGAGDLLIRDGVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTG 140 (258)
T ss_pred CCccccCHHHHHHHhcCCCcEEEeHHHHHHHHHhcCCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccC
Confidence 9999997543 222 235677777666555455667677899999999999999999999987732
Q ss_pred CceEEEEEeeCCcEEEEECCCCCCccccccccccCCCccEEEEeCCCC
Q 012419 216 GAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYC 263 (464)
Q Consensus 216 gs~~~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~EsT~~ 263 (464)
+.++|+|+. .|.++++.||+.+ ... ........+|++++..--.
T Consensus 141 ~~~~~vi~~-~g~~iyh~GDt~~-~~~--~~~~~~~~~DvallPig~~ 184 (258)
T COG2220 141 LWVGYVIET-PGGRVYHAGDTGY-LFL--IIEELDGPVDVALLPIGGY 184 (258)
T ss_pred CceEEEEEe-CCceEEeccCccH-HHH--hhhhhcCCccEEEeccCCC
Confidence 257899997 5679999999998 211 1111224589999998643
No 32
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.09 E-value=3.4e-10 Score=111.71 Aligned_cols=198 Identities=20% Similarity=0.108 Sum_probs=117.4
Q ss_pred ccccccccCCCcccccC-------CceeEEcCCCCCCCCCCceEecCCCc---C----CCCCccEEEeCccchhhhcCcc
Q 012419 96 PMKKLKASNGKSTATHL-------KKIVDRSCPFYKKIPGTPFTVDAFRY---G----SIKGCSAYFLTHFHYDHYGGLG 161 (464)
Q Consensus 96 ~~~~l~~g~~~~~~~~~-------~~~~lidcG~~~~~~~~~~~id~f~~---~----~i~~id~I~iTH~H~DHiggL~ 161 (464)
.|+.+.+|++++...-+ ...+++|||+... .+.+|.-.. . .+..+|+||+||.|+||+.|++
T Consensus 5 ~f~~lgsG~~gg~p~~~~~~~~c~~~~~~v~~~~~~~----~~lid~g~~~~~~~~~~~~~~idai~~TH~H~DHi~Gl~ 80 (269)
T COG1235 5 RFTVLGSGSSGGVPVIGCDCRACGGNRLRVDCGVGVK----TLLIDAGPDLRDQGLRLGVSDLDAILLTHEHSDHIQGLD 80 (269)
T ss_pred EEEEEEEcCCCCceecCCCccccCCceEEEEEEecce----eEEEecChhHHhhhhcccccccCeEEEecccHHhhcChH
Confidence 45666777766654411 2557888888543 233443221 1 1248999999999999999999
Q ss_pred c--cCCCCcEEeCHHHHHHHHHh--hc-cCCCceEEcCCCCEEEECCEEEEEEEcCCC------------------CCce
Q 012419 162 K--RWSHGPIYCSPLTARLVRMC--LL-VNPSYIHPLELNTEHVIDGVKVTLLEANHC------------------PGAA 218 (464)
Q Consensus 162 ~--~~~~~~Iy~s~~t~~~l~~~--~~-~~~~~~~~v~~~~~~~i~~~~v~~~~agH~------------------~gs~ 218 (464)
. .++..++|+.+.+....... .. .......+....+...+.+.++++++..|- ....
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hd~~~~~~~~~~~~~~~~~~~~~~ 160 (269)
T COG1235 81 DLRRAYTLPIYVNPGTLRASTSDRLLGGFPYLFRHPFPPFSLPAIGGLEVTPFPVPHDAIEPVGFVIIRTGRKLHGGTDI 160 (269)
T ss_pred HHHHHhcCCcccccceecccchhhhhccchhhhcCCCCccccccccceeeecCCCCCccccCCCcccccCcccccccccc
Confidence 6 34566777777665543321 11 111122333455566667777777776662 1345
Q ss_pred EEEEEeeCCcEEEEECCCCCCccccccccccCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 012419 219 LIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVG 298 (464)
Q Consensus 219 ~~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~ 298 (464)
+|..+... ..+.|++|+...++............++++.++++..+ .+ .+.+...+.+.+.++.. ...++++.
T Consensus 161 g~~~~~~~-~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~-gh-~~~h~~~~~a~~~~~~~----~~~rivLt 233 (269)
T COG1235 161 GYGLEWRI-GDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDP-GH-LSNHLSAEEALELIEKL----KPKRLVLT 233 (269)
T ss_pred eeeeeeee-ccEEEccccccCcchhHHHHhcCCccceeeeecccccc-CC-CCCchhHHHHHHHHHhC----CcceEEEE
Confidence 56655533 47889999988766543222234678899999998765 22 34445555555554432 22346676
Q ss_pred cccccH
Q 012419 299 AYSIGK 304 (464)
Q Consensus 299 ~~s~Gr 304 (464)
..+.-.
T Consensus 234 Hls~~~ 239 (269)
T COG1235 234 HLSHKN 239 (269)
T ss_pred ecCCCC
Confidence 666533
No 33
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.09 E-value=1.6e-10 Score=112.61 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=79.6
Q ss_pred CceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc--CCCCcEEeCHHHHHHHHHhhccCCCce
Q 012419 113 KKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR--WSHGPIYCSPLTARLVRMCLLVNPSYI 190 (464)
Q Consensus 113 ~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~--~~~~~Iy~s~~t~~~l~~~~~~~~~~~ 190 (464)
+..++||+|.... .++...... .++++||+||.|.||+||+... ...++||+++.+. . +...
T Consensus 20 ~~~ilID~g~~~~------i~~~l~~~g-~~l~~Il~TH~H~DHigG~~~l~~~~~~~V~~~~~~~--------~-~~~~ 83 (248)
T TIGR03413 20 GQAAVVDPGEAEP------VLDALEARG-LTLTAILLTHHHHDHVGGVAELLEAFPAPVYGPAEER--------I-PGIT 83 (248)
T ss_pred CCEEEEcCCChHH------HHHHHHHcC-CeeeEEEeCCCCccccCCHHHHHHHCCCeEEeccccc--------C-CCCc
Confidence 3688999986321 111111112 3689999999999999999853 2347899987641 1 1224
Q ss_pred EEcCCCCEEEECCEEEEEEEc-CCCCCceEEEEEeeCCcEEEEECCCCCC
Q 012419 191 HPLELNTEHVIDGVKVTLLEA-NHCPGAALIHFRLQDGQCYLHTGDFRAS 239 (464)
Q Consensus 191 ~~v~~~~~~~i~~~~v~~~~a-gH~~gs~~~~i~~~~g~~ilytGD~~~~ 239 (464)
+.+..++.+.+++.+|+++++ ||++|+++|+++. .+++|+||+-+.
T Consensus 84 ~~v~~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~~---~~~lftGDtl~~ 130 (248)
T TIGR03413 84 HPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLPD---SPALFCGDTLFS 130 (248)
T ss_pred EEeCCCCEEEECCEEEEEEECCCCCcccEEEEECC---CCEEEEcCcccc
Confidence 678899999999999999997 8999999998872 369999999764
No 34
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.08 E-value=2.6e-11 Score=129.21 Aligned_cols=145 Identities=15% Similarity=0.144 Sum_probs=93.6
Q ss_pred CCceeEEcCCCCCC-----CCCCceEecCCCcCCCCCccEEEeCccchhhhcCccc-------c-C--CCCc--EEeCHH
Q 012419 112 LKKIVDRSCPFYKK-----IPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGK-------R-W--SHGP--IYCSPL 174 (464)
Q Consensus 112 ~~~~~lidcG~~~~-----~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~-------~-~--~~~~--Iy~s~~ 174 (464)
....+++|||.... .-|.. .++. .+.++.+|||||.|+||..||+. + . ..-| |.+++.
T Consensus 470 ~~~~IlLDCGEgTlgql~R~YG~~-~~~~----~lr~LraI~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~q 544 (746)
T KOG2121|consen 470 SDDSILLDCGEGTLGQLVRHYGVE-NVDT----ALRKLRAIFISHLHADHHLGLISVLQARTKLLKGVENSPLLVVAPRQ 544 (746)
T ss_pred CCccEEeecCCchHHHHHHHhhhc-chHH----HHHhHHHHHHHhhcccccccHHHHHHHHHHhccccccCceEEeChHH
Confidence 45569999998542 22211 1222 35789999999999999999983 1 1 1223 344455
Q ss_pred HHHHHHHhhccC---C------C-ceEEcCCCCE-----------E-EECCEEEEEEEcCCCCCceEEEEEeeCCcEEEE
Q 012419 175 TARLVRMCLLVN---P------S-YIHPLELNTE-----------H-VIDGVKVTLLEANHCPGAALIHFRLQDGQCYLH 232 (464)
Q Consensus 175 t~~~l~~~~~~~---~------~-~~~~v~~~~~-----------~-~i~~~~v~~~~agH~~gs~~~~i~~~~g~~ily 232 (464)
..+.++...... . . ....+....+ + +.+...|...++-||+.|++..+....|.+++|
T Consensus 545 l~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l~~~~l~~i~tc~viHCp~syg~~i~~~~~~Ki~Y 624 (746)
T KOG2121|consen 545 LKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLLRELGLESIQTCPVIHCPQSYGCSITHGSGWKIVY 624 (746)
T ss_pred HHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHHHhcCceeEEecCcEecChhhceeEecccceEEEE
Confidence 555554332110 0 0 0000110011 1 236788999999999999999998755668999
Q ss_pred ECCCCCCccccccccccCCCccEEEEeCCCCCC
Q 012419 233 TGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNP 265 (464)
Q Consensus 233 tGD~~~~~~~~~~~~l~~~~~DlLi~EsT~~~~ 265 (464)
+||++.++..... .+++|+||+|+|+.+.
T Consensus 625 SGDTrP~~~~v~~----g~datlLIHEAT~ED~ 653 (746)
T KOG2121|consen 625 SGDTRPCEDLVKA----GKDATLLIHEATLEDD 653 (746)
T ss_pred cCCCCCchhHhhh----ccCCceEEeehhhchh
Confidence 9999997765432 3799999999999874
No 35
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.05 E-value=6.6e-10 Score=122.80 Aligned_cols=185 Identities=16% Similarity=0.159 Sum_probs=122.3
Q ss_pred cCCceeEEcCCCCC--CCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc---CCCCcEEeCHHHHHHHHHhhcc
Q 012419 111 HLKKIVDRSCPFYK--KIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---WSHGPIYCSPLTARLVRMCLLV 185 (464)
Q Consensus 111 ~~~~~~lidcG~~~--~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~~~ 185 (464)
.++..+++|||..- ...+....++..+...++ ||++++||.|.||+||++.. .....++.+.... .
T Consensus 457 ~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~~~v~~i~~~~~~~--------~ 527 (662)
T TIGR00361 457 ANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKHHPVKRLVIPKGFV--------E 527 (662)
T ss_pred ECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHhCCccEEEeccchh--------h
Confidence 45588999999631 112223455556556666 99999999999999999853 2334677664411 1
Q ss_pred CCCceEEcCCCCEEEECCEEEEEEEcCC------CCCceEEEEEeeCCcEEEEECCCCCCccccccccccCCCccEEEEe
Q 012419 186 NPSYIHPLELNTEHVIDGVKVTLLEANH------CPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLD 259 (464)
Q Consensus 186 ~~~~~~~v~~~~~~~i~~~~v~~~~agH------~~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~E 259 (464)
.......+..|+.+++++++++++.... -..|+.+.++. ++.++++|||.....+..........++|+|..
T Consensus 528 ~~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~-~~~~~L~tGD~~~~~E~~l~~~~~~l~~dvLk~- 605 (662)
T TIGR00361 528 EGVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDD-GGNSWLLTGDLEAEGEQEVMRVFPNIKADVLQV- 605 (662)
T ss_pred CCCceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEE-CCeeEEEecCCCHHHHHHHHhcccCcCccEEEe-
Confidence 1233566888999999999999986432 23578888886 678999999998765433221112246788843
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccccH-------HHHHHHHHHHcCCeEEEcc
Q 012419 260 TTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGK-------ESVFLAISKALGVKIYANA 323 (464)
Q Consensus 260 sT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~Gr-------~qell~l~~~~~~~I~v~~ 323 (464)
.+|.++.....++++.+ .|+ .++|. .|+ .+++++.+++.++++|-.+
T Consensus 606 -------~HHGS~~Sss~~fl~~v------~P~-~aiiS---~g~~N~yghP~~~vl~rl~~~g~~~~~T~ 659 (662)
T TIGR00361 606 -------GHHGSKTSTSEELIQQV------QPK-VAIIS---AGRNNRWHHPHQKVLQRLQRHSIRVLRTD 659 (662)
T ss_pred -------CCCCCCCCChHHHHHhc------CCC-EEEEE---CCCCCCCCCChHHHHHHHHHCCCeEEecC
Confidence 35566666666777655 366 33343 243 3788999999999987543
No 36
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.99 E-value=7.8e-10 Score=108.41 Aligned_cols=111 Identities=22% Similarity=0.185 Sum_probs=78.2
Q ss_pred CceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc---CCCCcEEeCHHHHHHHHHhhccCCCc
Q 012419 113 KKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---WSHGPIYCSPLTARLVRMCLLVNPSY 189 (464)
Q Consensus 113 ~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~~~~~~~ 189 (464)
+..++||.|.... +++...... .+|++||+||.|.||+||+..+ ...++||++.... . +..
T Consensus 23 ~~~vlIDp~~~~~------il~~l~~~g-~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~~--------~-~~~ 86 (258)
T PLN02469 23 KDAAVVDPVDPEK------VLQAAHEHG-AKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLDN--------V-KGC 86 (258)
T ss_pred CeEEEECCCChHH------HHHHHHHcC-CcccEEEecCCCCccccCHHHHHHHCCCCEEEEechhc--------C-CCC
Confidence 4688899874221 122221112 4799999999999999999852 3467899976421 0 112
Q ss_pred eEEcCCCCEEEECC-EEEEEEEc-CCCCCceEEEEEeeC-CcEEEEECCCCCC
Q 012419 190 IHPLELNTEHVIDG-VKVTLLEA-NHCPGAALIHFRLQD-GQCYLHTGDFRAS 239 (464)
Q Consensus 190 ~~~v~~~~~~~i~~-~~v~~~~a-gH~~gs~~~~i~~~~-g~~ilytGD~~~~ 239 (464)
.+.+..|+.+.+++ .+++++.+ ||++|+++|++.... ...++||||+-+.
T Consensus 87 ~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~ 139 (258)
T PLN02469 87 THPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFI 139 (258)
T ss_pred CeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccC
Confidence 35688899999985 78999998 999999999986311 2359999998663
No 37
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.97 E-value=3.2e-09 Score=96.61 Aligned_cols=96 Identities=22% Similarity=0.243 Sum_probs=62.2
Q ss_pred CCccEEEeCccchhhhcCccccCCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCCEEEECCEEEEEEEcCCC-------
Q 012419 142 KGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHC------- 214 (464)
Q Consensus 142 ~~id~I~iTH~H~DHiggL~~~~~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~~~~i~~~~v~~~~agH~------- 214 (464)
.++|+|+|||.|.||+..-.... + ...+..+..++.+++++++|+.+++.|.
T Consensus 35 ~~~D~IlisH~H~DH~~~~~l~~----~-----------------~~~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~ 93 (163)
T PF13483_consen 35 PKADAILISHSHPDHFDPETLKR----L-----------------DRDIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPR 93 (163)
T ss_dssp -B-SEEEESSSSTTT-CCCCCCC----H-----------------HTSSEEE-TTEEEECTTEEEEEEEEEE-STGTS-T
T ss_pred CCCCEEEECCCccccCChhHhhh----c-----------------ccccEEEccceEEEEeeeEEEEEeeeccccCCCCc
Confidence 68999999999999995411110 0 2456788889999999999999999873
Q ss_pred CCceEEEEEeeCCcEEEEECCCCCCccccccccccCCCccEEEEeCC
Q 012419 215 PGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTT 261 (464)
Q Consensus 215 ~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~EsT 261 (464)
...++|+++. +|.+|+|.||+....+...... ..++|++++-+.
T Consensus 94 ~~~~~~~i~~-~g~~i~~~Gd~~~~~~~~~~~~--~~~vDvl~~p~~ 137 (163)
T PF13483_consen 94 GENVGYLIEV-GGVTIYHAGDTGFPPDDEQLKQ--LGKVDVLFLPVG 137 (163)
T ss_dssp TCCEEEEEEE-TTEEEEE-TT--S---HHHHHH--H-S-SEEEEE--
T ss_pred CCeEEEEEEe-CCCEEEEECCCccCCCHHHHhc--ccCCCEEEecCC
Confidence 3478999997 7899999999987543322222 268999999875
No 38
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.93 E-value=2.7e-09 Score=107.61 Aligned_cols=88 Identities=23% Similarity=0.259 Sum_probs=71.0
Q ss_pred CCccEEEeCccchhhhcCcccc--CCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCCEEEECCEEEEEEEc-CCCCCce
Q 012419 142 KGCSAYFLTHFHYDHYGGLGKR--WSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEA-NHCPGAA 218 (464)
Q Consensus 142 ~~id~I~iTH~H~DHiggL~~~--~~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~~~~i~~~~v~~~~a-gH~~gs~ 218 (464)
.+|++|++||.|.||+||+..+ .+..+||++......+. ..-..+..|+.+.+++.+++++++ ||++|++
T Consensus 120 ~~L~~ILlTH~H~DH~GG~~~L~~~~ga~V~g~~~~~~~i~-------~~d~~v~dGd~i~lgg~~l~vi~tPGHT~GhI 192 (329)
T PLN02398 120 RNLTYILNTHHHYDHTGGNLELKARYGAKVIGSAVDKDRIP-------GIDIVLKDGDKWMFAGHEVLVMETPGHTRGHI 192 (329)
T ss_pred CCceEEEECCCCchhhCCHHHHHHhcCCEEEEehHHhhhcc-------CCcEEeCCCCEEEECCeEEEEEeCCCcCCCCE
Confidence 5799999999999999999863 24689999987654221 123568889999999999999998 9999999
Q ss_pred EEEEEeeCCcEEEEECCCCCC
Q 012419 219 LIHFRLQDGQCYLHTGDFRAS 239 (464)
Q Consensus 219 ~~~i~~~~g~~ilytGD~~~~ 239 (464)
+|++. +. .++|+||+-+.
T Consensus 193 ~~~~~--~~-~vLFtGDtLf~ 210 (329)
T PLN02398 193 SFYFP--GS-GAIFTGDTLFS 210 (329)
T ss_pred EEEEC--CC-CEEEECCCcCC
Confidence 99875 32 58999999764
No 39
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.91 E-value=1.6e-09 Score=105.77 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=77.0
Q ss_pred CCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCccc---cCCCCcEEeCHHHHHHHHHhhccCCC
Q 012419 112 LKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGK---RWSHGPIYCSPLTARLVRMCLLVNPS 188 (464)
Q Consensus 112 ~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~---~~~~~~Iy~s~~t~~~l~~~~~~~~~ 188 (464)
++..+++|+|.... .+....... .++++|++||.|.||+||+.. .....+||++..+.. ..
T Consensus 21 ~~~~ilIDpg~~~~------vl~~l~~~g-~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~---------~~ 84 (251)
T PRK10241 21 AGRCLIVDPGEAEP------VLNAIAENN-WQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQD---------KG 84 (251)
T ss_pred CCcEEEECCCChHH------HHHHHHHcC-CccCEEEeCCCCchhhccHHHHHHHCCCCEEEecccccc---------cC
Confidence 35678899986431 112111112 357899999999999999985 334678999765421 11
Q ss_pred ceEEcCCCCEEEECCEEEEEEEc-CCCCCceEEEEEeeCCcEEEEECCCCCC
Q 012419 189 YIHPLELNTEHVIDGVKVTLLEA-NHCPGAALIHFRLQDGQCYLHTGDFRAS 239 (464)
Q Consensus 189 ~~~~v~~~~~~~i~~~~v~~~~a-gH~~gs~~~~i~~~~g~~ilytGD~~~~ 239 (464)
..+.+..|+.+.+++.+++++.+ ||++|+++|+. + .++||||+-+.
T Consensus 85 ~~~~v~~g~~i~ig~~~~~vi~tPGHT~ghi~~~~---~--~~lFtGDtlf~ 131 (251)
T PRK10241 85 TTQVVKDGETAFVLGHEFSVFATPGHTLGHICYFS---K--PYLFCGDTLFS 131 (251)
T ss_pred CceEeCCCCEEEeCCcEEEEEEcCCCCccceeeec---C--CcEEEcCeecc
Confidence 23567889999999999999997 99999999954 2 37999998664
No 40
>PRK11539 ComEC family competence protein; Provisional
Probab=98.90 E-value=3.7e-09 Score=118.40 Aligned_cols=180 Identities=14% Similarity=0.107 Sum_probs=117.6
Q ss_pred cCCceeEEcCCCCCC--CCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc---CCCCcEEeCHHHHHHHHHhhcc
Q 012419 111 HLKKIVDRSCPFYKK--IPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---WSHGPIYCSPLTARLVRMCLLV 185 (464)
Q Consensus 111 ~~~~~~lidcG~~~~--~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~~~ 185 (464)
.+++.+++|+|..-. ..+....++..+...+ ++|++++||.|.||+||++.. .+...||.+...
T Consensus 518 ~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi-~lD~lilSH~d~DH~GGl~~Ll~~~~~~~i~~~~~~---------- 586 (755)
T PRK11539 518 RNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL-TPEGIILSHEHLDHRGGLASLLHAWPMAWIRSPLNW---------- 586 (755)
T ss_pred ECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC-CcCEEEeCCCCcccCCCHHHHHHhCCcceeeccCcc----------
Confidence 567889999997321 1122234455555566 699999999999999999853 344567765311
Q ss_pred CCCceEEcCCCCEEEECCEEEEEEEc-CCC-----CCceEEEEEeeCCcEEEEECCCCCCccccccccc-cCCCccEEEE
Q 012419 186 NPSYIHPLELNTEHVIDGVKVTLLEA-NHC-----PGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLL-VNHRVNVLYL 258 (464)
Q Consensus 186 ~~~~~~~v~~~~~~~i~~~~v~~~~a-gH~-----~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~~~l-~~~~~DlLi~ 258 (464)
....+...|+.++.++++++++.. +|. .+|+.+.++. ++.++++|||.....+....... ...++|+|..
T Consensus 587 --~~~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~-~~~~~LltGDi~~~~E~~Ll~~~~~~l~~dvL~v 663 (755)
T PRK11539 587 --ANHLPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDD-GKHSILLTGDLEAQAEQKLLSRYWQQLAATLLQV 663 (755)
T ss_pred --cCcccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEE-CCEEEEEEeCCChHHHHHHHhcCccCcCCCEEEe
Confidence 112334678889999999999854 443 4688999986 67899999999765543321111 1236788743
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccccH-------HHHHHHHHHHcCCeEEEc
Q 012419 259 DTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGK-------ESVFLAISKALGVKIYAN 322 (464)
Q Consensus 259 EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~Gr-------~qell~l~~~~~~~I~v~ 322 (464)
.+|.++.....++++.+ .|+ .++| |.|+ ..++++.+++.|++++-.
T Consensus 664 --------pHHGS~tSss~~fl~~v------~P~-~aii---S~g~~NryghP~~~v~~rl~~~g~~~~~T 716 (755)
T PRK11539 664 --------PHHGSNTSSSLPFIRAV------NGK-VALA---SASRYNAWRLPSVKVKQRYQQQGYQWRDT 716 (755)
T ss_pred --------CCCCCCCCChHHHHHhc------CCC-EEEE---eCCCCCCCCCCCHHHHHHHHHcCCeEEEc
Confidence 35566666667777655 366 3333 3354 367888888888887744
No 41
>PLN02962 hydroxyacylglutathione hydrolase
Probab=98.89 E-value=2.9e-09 Score=103.82 Aligned_cols=112 Identities=13% Similarity=-0.065 Sum_probs=76.5
Q ss_pred CceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc---CCCCcEEeCHHHHHHHHHhhccCCCc
Q 012419 113 KKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---WSHGPIYCSPLTARLVRMCLLVNPSY 189 (464)
Q Consensus 113 ~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~~~~~~~ 189 (464)
+.+++||.|.... . ..++...... .+|.+||+||.|.||++|+..+ ...+++|+.+.. .. ..
T Consensus 36 ~~avlIDP~~~~~-~---~~l~~l~~~g-~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~--------~~--~~ 100 (251)
T PLN02962 36 KPALLIDPVDKTV-D---RDLSLVKELG-LKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKAS--------GS--KA 100 (251)
T ss_pred CEEEEECCCCCcH-H---HHHHHHHHCC-CeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEecccc--------CC--CC
Confidence 4678889874210 0 0111111112 4688999999999999999853 236788886531 11 11
Q ss_pred eEEcCCCCEEEECCEEEEEEEc-CCCCCceEEEEEee---CCcEEEEECCCCCC
Q 012419 190 IHPLELNTEHVIDGVKVTLLEA-NHCPGAALIHFRLQ---DGQCYLHTGDFRAS 239 (464)
Q Consensus 190 ~~~v~~~~~~~i~~~~v~~~~a-gH~~gs~~~~i~~~---~g~~ilytGD~~~~ 239 (464)
-..+..++.+.+++++++++.+ ||++|+++|++... ....++||||+-+.
T Consensus 101 d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~ 154 (251)
T PLN02962 101 DLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLI 154 (251)
T ss_pred CEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeecc
Confidence 2457889999999999999998 99999999987521 12359999998664
No 42
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.83 E-value=5e-09 Score=100.23 Aligned_cols=123 Identities=23% Similarity=0.231 Sum_probs=79.9
Q ss_pred CceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCccccC--C-CCcEEeCHHHHHHHHHhhc-----
Q 012419 113 KKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRW--S-HGPIYCSPLTARLVRMCLL----- 184 (464)
Q Consensus 113 ~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~~--~-~~~Iy~s~~t~~~l~~~~~----- 184 (464)
...+++|||..... .....+...... .+|++|++||.|.||+||+.... . ..+++..+...........
T Consensus 35 ~~~~liD~G~~~~~--~~~~~~~l~~~~-~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (252)
T COG0491 35 GGAVLIDTGLGDAD--AEALLEALAALG-LDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPLLLREEILRKAGV 111 (252)
T ss_pred CceEEEeCCCCchH--HHHHHHHHHHcC-CChheeeecCCchhhhccHHHHHhhcCCceEEccchhhhhhhccccccccc
Confidence 47899999985421 001111111112 27999999999999999998532 2 3567555544433221110
Q ss_pred ------cC-CCceEEcCCCCEEEECCEEEEEEEc-CCCCCceEEEEEeeCCcEEEEECCCCCCcc
Q 012419 185 ------VN-PSYIHPLELNTEHVIDGVKVTLLEA-NHCPGAALIHFRLQDGQCYLHTGDFRASRL 241 (464)
Q Consensus 185 ------~~-~~~~~~v~~~~~~~i~~~~v~~~~a-gH~~gs~~~~i~~~~g~~ilytGD~~~~~~ 241 (464)
.. ......+..++.+.+++..++++++ ||++|+++|+++. + +++|+||.-+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~-~--~~l~~gD~~~~~~ 173 (252)
T COG0491 112 TAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLED-G--GVLFTGDTLFAGD 173 (252)
T ss_pred ccccCCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECC-c--cEEEecceeccCC
Confidence 01 1234455678889998877888887 9999999999984 2 3999999977543
No 43
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.79 E-value=6.4e-08 Score=97.62 Aligned_cols=144 Identities=20% Similarity=0.291 Sum_probs=98.1
Q ss_pred CCccEEEeCccchhhhcCccc----c-C---CCCcEEeCHHHHHHHHHh-hc--cCC-------------CceEEcCCCC
Q 012419 142 KGCSAYFLTHFHYDHYGGLGK----R-W---SHGPIYCSPLTARLVRMC-LL--VNP-------------SYIHPLELNT 197 (464)
Q Consensus 142 ~~id~I~iTH~H~DHiggL~~----~-~---~~~~Iy~s~~t~~~l~~~-~~--~~~-------------~~~~~v~~~~ 197 (464)
..|.++||||+|.||+.||-- . . ..-+||+.+.|.+.++.. +. +++ ..+..+.+++
T Consensus 78 ~~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~ 157 (335)
T PF02112_consen 78 NHIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGE 157 (335)
T ss_pred HhhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccccc
Confidence 578999999999999999852 1 1 456899999999999853 21 111 1234455554
Q ss_pred EEEEC-------------CEEEEEEEcCCCC-C-----ceEEEEEeeC-CcEEEEECCCCCCccccc----------ccc
Q 012419 198 EHVID-------------GVKVTLLEANHCP-G-----AALIHFRLQD-GQCYLHTGDFRASRLMQS----------YPL 247 (464)
Q Consensus 198 ~~~i~-------------~~~v~~~~agH~~-g-----s~~~~i~~~~-g~~ilytGD~~~~~~~~~----------~~~ 247 (464)
...+. +..|++++..|.. - |.+|+|+... |..|+|.||+..+..... .|.
T Consensus 158 ~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~ 237 (335)
T PF02112_consen 158 LIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPK 237 (335)
T ss_pred eeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHhh
Confidence 43332 3567779999933 3 7999998642 478999999987642211 122
Q ss_pred ccCCCccEEEEeCCCCCCC-----CCCCCHHHHHHHHHHHHHH
Q 012419 248 LVNHRVNVLYLDTTYCNPK-----YKFPSKEDVLNYVVRLTKN 285 (464)
Q Consensus 248 l~~~~~DlLi~EsT~~~~~-----~~~p~~~~~~~~l~~~i~~ 285 (464)
....+...+++||.|.+.. +-|-++....++|....+.
T Consensus 238 I~~~~LkaI~IEcS~~~~~~d~~LyGHLtP~~Li~EL~~L~~~ 280 (335)
T PF02112_consen 238 IASGKLKAIFIECSYPNSQPDSQLYGHLTPKHLIEELKVLASK 280 (335)
T ss_pred ccccccCEEEEEeCCCCCCCchHhhccCCHHHHHHHHHHHHhc
Confidence 3357889999999998643 3466677777777665543
No 44
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.70 E-value=5.8e-09 Score=94.92 Aligned_cols=126 Identities=21% Similarity=0.061 Sum_probs=69.7
Q ss_pred cCCceeEEcCCCCCCCCCCce-EecCCCcCCCCCccEEEeCccchhhhcCcccc---CCCCcEEeCHHHHHHHHHhhcc-
Q 012419 111 HLKKIVDRSCPFYKKIPGTPF-TVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR---WSHGPIYCSPLTARLVRMCLLV- 185 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~~~~-~id~f~~~~i~~id~I~iTH~H~DHiggL~~~---~~~~~Iy~s~~t~~~l~~~~~~- 185 (464)
.++..+++|||.......... .... ....+|++||+||.|.||+||++.. .....+++..............
T Consensus 13 ~~~~~iliD~G~~~~~~~~~~~~~~~---~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (194)
T PF00753_consen 13 GGDGAILIDTGLDPDFAKELELALLG---ISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAKAIRPPDRDS 89 (194)
T ss_dssp ETTEEEEESEBSSHHHHHHHHHHHHH---HTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEeCCCCchhhHHhhhhHhh---ccCCCeEEEEECcccccccccccccccccceeeeecccccccccccccccc
Confidence 688999999999653221110 0011 1337899999999999999999852 3333445554444332221110
Q ss_pred -------CCCceEEcCCCCEEEE-CCEEEEEEEcCCCCCceEEEEEeeCCcEEEEECCCCCCcc
Q 012419 186 -------NPSYIHPLELNTEHVI-DGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRL 241 (464)
Q Consensus 186 -------~~~~~~~v~~~~~~~i-~~~~v~~~~agH~~gs~~~~i~~~~g~~ilytGD~~~~~~ 241 (464)
................ +...... ..+|..++..+.+.. .+.+++||||......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~vlftGD~~~~~~ 151 (194)
T PF00753_consen 90 ASRRGPAVPPPPIIDEDEDDLEIGGDRILFI-IPGPGHGSDSLIIYL-PGGKVLFTGDLLFSNE 151 (194)
T ss_dssp HHHHHHHHESEEEEEETTTEEEEETTEEEEE-EESSSSSTTEEEEEE-TTTTEEEEETTSCTTT
T ss_pred ccccccccccccceeeecccccccccccccc-eeccccCCcceEEEe-CCCcEEEeeeEeccCC
Confidence 0111223333344444 4444433 344444444444444 3457999999988654
No 45
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.67 E-value=5e-08 Score=99.25 Aligned_cols=126 Identities=17% Similarity=0.101 Sum_probs=100.4
Q ss_pred ccCCCcccc-cCCceeEEcCCCCCC----CCCCceEecCCCcCCCCCccEEEeCccchhhhcCccc---cCCCCcEEeCH
Q 012419 102 ASNGKSTAT-HLKKIVDRSCPFYKK----IPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGK---RWSHGPIYCSP 173 (464)
Q Consensus 102 ~g~~~~~~~-~~~~~~lidcG~~~~----~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~---~~~~~~Iy~s~ 173 (464)
.|+.-|+.+ .++..+|+|.+..+. ...+...+|+ ++||+|+++|.-.||.|+|+. ..++++|+||.
T Consensus 32 ~GttyNSYLI~~~k~aLID~~~~~~~~~~l~~l~~~id~------k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~ 105 (388)
T COG0426 32 RGTTYNSYLIVGDKTALIDTVGEKFFDEYLENLSKYIDP------KEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSK 105 (388)
T ss_pred CCceeeeEEEeCCcEEEECCCCcchHHHHHHHHHhhcCh------hcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeH
Confidence 355555554 688889999987542 1223345665 789999999999999999995 45689999999
Q ss_pred HHHHHHHHhhccCCCceEEcCCCCEEEECCEEEEEEEc--CCCCCceEEEEEeeCCcEEEEECCCC
Q 012419 174 LTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEA--NHCPGAALIHFRLQDGQCYLHTGDFR 237 (464)
Q Consensus 174 ~t~~~l~~~~~~~~~~~~~v~~~~~~~i~~~~v~~~~a--gH~~gs~~~~i~~~~g~~ilytGD~~ 237 (464)
..++.++..+..+.. +..++.|+.+.+||-+++++++ -|.|+++..+... + +|+||+|..
T Consensus 106 ~~~~~L~~~~~~~~~-~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd~~-~--kILFS~D~f 167 (388)
T COG0426 106 LAARFLKGFYHDPEW-FKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYDPE-D--KILFSCDAF 167 (388)
T ss_pred HHHHHHHHhcCCccc-eeecCCCCEeccCCcEEEEEeCCCCCCCCceeEeecC-C--cEEEccccc
Confidence 999999887765544 8999999999999999999998 8899998766553 3 599999974
No 46
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=98.66 E-value=1.6e-08 Score=71.19 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=32.7
Q ss_pred CEEEEeEeccCCCCHHHHHHHHHhcCCCeEEEecccCCHH
Q 012419 405 NITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAA 444 (464)
Q Consensus 405 ~~~i~~i~~S~Had~~eL~~~v~~l~Pk~ViP~~~hg~~~ 444 (464)
++++..++||+|||++||++|++.++|++|+ ++|||++
T Consensus 6 ~a~v~~~~fSgHad~~~L~~~i~~~~p~~vi--lVHGe~~ 43 (43)
T PF07521_consen 6 RARVEQIDFSGHADREELLEFIEQLNPRKVI--LVHGEPR 43 (43)
T ss_dssp -SEEEESGCSSS-BHHHHHHHHHHHCSSEEE--EESSEHH
T ss_pred EEEEEEEeecCCCCHHHHHHHHHhcCCCEEE--EecCCCC
Confidence 4578889999999999999999999999999 6699864
No 47
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.56 E-value=1.3e-07 Score=91.50 Aligned_cols=90 Identities=22% Similarity=0.251 Sum_probs=69.6
Q ss_pred CCCccEEEeCccchhhhcCccccC----CCCcEEeCHHHHHHHHHhhccCCCceEEcCCCCEEEECCEEEEEEEc-CCCC
Q 012419 141 IKGCSAYFLTHFHYDHYGGLGKRW----SHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEA-NHCP 215 (464)
Q Consensus 141 i~~id~I~iTH~H~DHiggL~~~~----~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~~~~i~~~~v~~~~a-gH~~ 215 (464)
..++.+||.||.|.||+||+.... +++.+|.... ... +...+.++.++.+.++|.+|+++++ ||+.
T Consensus 49 ~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~------~r~---~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~ 119 (265)
T KOG0813|consen 49 NRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGAD------DRI---PGITRGLKDGETVTVGGLEVRCLHTPGHTA 119 (265)
T ss_pred cCceeEEEeccccccccCcHHHHHhhccCCcEEecCCh------hcC---ccccccCCCCcEEEECCEEEEEEeCCCccC
Confidence 368999999999999999998522 3566777741 111 1122347889999999999999999 9999
Q ss_pred CceEEEEEeeCCcEEEEECCCCCC
Q 012419 216 GAALIHFRLQDGQCYLHTGDFRAS 239 (464)
Q Consensus 216 gs~~~~i~~~~g~~ilytGD~~~~ 239 (464)
|++.|++....|.+.+||||+-+.
T Consensus 120 ~hi~~~~~~~~~e~~iFtGDtlf~ 143 (265)
T KOG0813|consen 120 GHICYYVTESTGERAIFTGDTLFG 143 (265)
T ss_pred CcEEEEeecCCCCCeEEeCCceee
Confidence 999999983235689999999654
No 48
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=98.50 E-value=4.4e-07 Score=78.82 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=43.4
Q ss_pred CCceEEEEeCCCCChhhHHHHHhhhCCCCCCEEEEeeccccccCCccccc
Q 012419 346 NDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQL 395 (464)
Q Consensus 346 ~~~~V~v~~~~~l~~g~~~~~l~~~~~~~~~~i~~~~tG~~~~~~~g~~l 395 (464)
.+|+|++++++||++|+++++++++..+++|+|+| |||+.++|+|++|
T Consensus 79 ~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~--~gy~~~~T~g~~l 126 (126)
T PF10996_consen 79 SGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIF--TGYQAPGTLGRRL 126 (126)
T ss_dssp CSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEE--SSS--TTSHHHHH
T ss_pred CCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEE--ecCCCCCCccccC
Confidence 48999999999999999999999999999999999 9999999998764
No 49
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=98.12 E-value=2e-05 Score=75.80 Aligned_cols=140 Identities=17% Similarity=0.271 Sum_probs=92.6
Q ss_pred CCccEEEeCccchhhhcCccc------cCCCCcEEeCHHHHHHHHHhhc---cC---------CCceEEcCCCCEEEE--
Q 012419 142 KGCSAYFLTHFHYDHYGGLGK------RWSHGPIYCSPLTARLVRMCLL---VN---------PSYIHPLELNTEHVI-- 201 (464)
Q Consensus 142 ~~id~I~iTH~H~DHiggL~~------~~~~~~Iy~s~~t~~~l~~~~~---~~---------~~~~~~v~~~~~~~i-- 201 (464)
..|...||||+|.||+.|+-- ...+-.||+.+.|.+.++...- ++ ..+++.+++.+...+
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~ 190 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTL 190 (356)
T ss_pred hhhhheEeccccccchhceeecCccccccCCceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeee
Confidence 678999999999999999852 2234589999999998875421 11 124677777766554
Q ss_pred CCEEEEEEEcCCCC--C----ceEEEEEee-CCcEEEEECCCCCCccccc---c-------ccccCCCccEEEEeCCCCC
Q 012419 202 DGVKVTLLEANHCP--G----AALIHFRLQ-DGQCYLHTGDFRASRLMQS---Y-------PLLVNHRVNVLYLDTTYCN 264 (464)
Q Consensus 202 ~~~~v~~~~agH~~--g----s~~~~i~~~-~g~~ilytGD~~~~~~~~~---~-------~~l~~~~~DlLi~EsT~~~ 264 (464)
-..++.+|++.|-. | |.+|+|+.. ...-++|.||+..+..... . ......+..-+++||.|.+
T Consensus 191 t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~LkgiliEcS~P~ 270 (356)
T COG5212 191 TRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILIECSYPN 270 (356)
T ss_pred eeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEEEecCCC
Confidence 45678899999932 2 467888742 1346999999987643211 0 0112356777899999976
Q ss_pred CCC-----CCCCHHHHHHHHHH
Q 012419 265 PKY-----KFPSKEDVLNYVVR 281 (464)
Q Consensus 265 ~~~-----~~p~~~~~~~~l~~ 281 (464)
... -|-.+...++++..
T Consensus 271 ~~~~~~LfGH~~P~~L~nEL~~ 292 (356)
T COG5212 271 DVADNKLFGHMTPTWLLNELKK 292 (356)
T ss_pred CCChhHhhcccChHHHHHHHHH
Confidence 432 23344555666554
No 50
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=97.99 E-value=1.6e-05 Score=76.58 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=45.6
Q ss_pred cCCceeEEcCCCCCCC--CC-CceEecCCCcCCCCCccEEEeCccchhhhcCcccc----CCCCcEEeCHHHHH
Q 012419 111 HLKKIVDRSCPFYKKI--PG-TPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR----WSHGPIYCSPLTAR 177 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~--~~-~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~----~~~~~Iy~s~~t~~ 177 (464)
....++|.|+|..... .+ ..+.+|+ .+||+|+|||.|.||+|||+.. ...++||+++....
T Consensus 29 ~~~~riLFDtG~~~~~ll~Na~~lgvd~------~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 29 DEGTRILFDTGTDSDVLLHNARLLGVDL------RDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHcCCCc------ccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 3447899999975421 11 1245555 7999999999999999999952 36789999998765
No 51
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.90 E-value=0.00026 Score=67.69 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=108.0
Q ss_pred cCCceeEEcCCCCCCCCCCceEecCCCc-------------CCCCCccEEEeCccchhhhcCccc-----------cCCC
Q 012419 111 HLKKIVDRSCPFYKKIPGTPFTVDAFRY-------------GSIKGCSAYFLTHFHYDHYGGLGK-----------RWSH 166 (464)
Q Consensus 111 ~~~~~~lidcG~~~~~~~~~~~id~f~~-------------~~i~~id~I~iTH~H~DHiggL~~-----------~~~~ 166 (464)
+++-.+++|.|+.- ....+.++|-+. ...++.|.|.|||.|.||.--.-. ..+.
T Consensus 22 t~dv~ILiDpGVsL--aPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e~~~eiY~ 99 (304)
T COG2248 22 TKDVGILIDPGVSL--APKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGETAKEIYK 99 (304)
T ss_pred cCCeeEEECCcccc--CccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcccchHHHhc
Confidence 78889999999843 111233344321 112578999999999999854211 0111
Q ss_pred CcE-EeCHHHHHHHH-------Hhhcc--CCCceEEcCCCCEEEECCEEEEEEEc-CCCC-Cc-----eEEEEEeeCCcE
Q 012419 167 GPI-YCSPLTARLVR-------MCLLV--NPSYIHPLELNTEHVIDGVKVTLLEA-NHCP-GA-----ALIHFRLQDGQC 229 (464)
Q Consensus 167 ~~I-y~s~~t~~~l~-------~~~~~--~~~~~~~v~~~~~~~i~~~~v~~~~a-gH~~-gs-----~~~~i~~~~g~~ 229 (464)
.++ .+-.+|..+-. ..+.. ...+-.....|.+|++++.+|.+=+. -|-+ |+ +++.+.. ++.+
T Consensus 100 gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~d-g~~~ 178 (304)
T COG2248 100 GKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTD-GKSS 178 (304)
T ss_pred CcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEec-CCeE
Confidence 121 11112211100 00000 01123456778999999999998776 8844 23 3444543 4468
Q ss_pred EEEECCCC-CCccccccccccCCCccEEEEeC--CCCCC-CCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccc---
Q 012419 230 YLHTGDFR-ASRLMQSYPLLVNHRVNVLYLDT--TYCNP-KYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSI--- 302 (464)
Q Consensus 230 ilytGD~~-~~~~~~~~~~l~~~~~DlLi~Es--T~~~~-~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~--- 302 (464)
|+|+.|+. ...+..+. ++...++|++|+.. ||... .....+.+..++.+.++ +++.+. .++|....+
T Consensus 179 i~faSDvqGp~~~~~l~-~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~i----i~~~~~-~lViDHHllRD~ 252 (304)
T COG2248 179 IVFASDVQGPINDEALE-FILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERI----IEETNA-TLVIDHHLLRDK 252 (304)
T ss_pred EEEcccccCCCccHHHH-HHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHH----HHhCcc-eEEEeehhhcCC
Confidence 99999995 44333222 22347899999987 32211 11112233344444444 444443 466766543
Q ss_pred cHH---HHHHHHHHHcCCeEEEcc
Q 012419 303 GKE---SVFLAISKALGVKIYANA 323 (464)
Q Consensus 303 Gr~---qell~l~~~~~~~I~v~~ 323 (464)
+.. +++...++..|+.|-...
T Consensus 253 ~y~e~l~~l~~~~~~~GV~v~TaA 276 (304)
T COG2248 253 NYREFLEELFERAEKAGVEVATAA 276 (304)
T ss_pred CHHHHHHHHHhhHhhcCceeeeHH
Confidence 222 344555566677765443
No 52
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=97.52 E-value=0.00019 Score=64.92 Aligned_cols=86 Identities=22% Similarity=0.107 Sum_probs=59.3
Q ss_pred CccEEEeCccchhhhcCccccCCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCCEEEECCEEEEEEEc-CCCCCceEEE
Q 012419 143 GCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEA-NHCPGAALIH 221 (464)
Q Consensus 143 ~id~I~iTH~H~DHiggL~~~~~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~~~~i~~~~v~~~~a-gH~~gs~~~~ 221 (464)
++-+-+-||.|+||+-|-..+..-.| ..+..+...-+. +.-.-++.|+.++|+++.+.+..+ ||++|++.|+
T Consensus 57 ~LiYa~NTH~HADHiTGtg~Lkt~~p-----g~kSVis~~SGa--kAD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV 129 (237)
T KOG0814|consen 57 DLIYALNTHVHADHITGTGLLKTLLP-----GCKSVISSASGA--KADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYV 129 (237)
T ss_pred eeeeeecceeecccccccchHHHhcc-----cHHHHhhhcccc--ccccccCCCCEEEEccEEEEEecCCCCCCceEEEE
Confidence 45567889999999988765321111 112222222221 222457899999999999999887 9999999998
Q ss_pred EEeeCCcEEEEECCCCC
Q 012419 222 FRLQDGQCYLHTGDFRA 238 (464)
Q Consensus 222 i~~~~g~~ilytGD~~~ 238 (464)
.. ++ +..||||.-.
T Consensus 130 ~~--d~-~~aFTGDalL 143 (237)
T KOG0814|consen 130 EH--DL-RMAFTGDALL 143 (237)
T ss_pred ec--Cc-ceeeecceeE
Confidence 76 33 7999999844
No 53
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=96.80 E-value=0.01 Score=56.89 Aligned_cols=158 Identities=13% Similarity=0.121 Sum_probs=88.0
Q ss_pred CCCCCccEEEeCccchhhhcCccc---cCCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCCEEEE----CCEEEEEEEc
Q 012419 139 GSIKGCSAYFLTHFHYDHYGGLGK---RWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVI----DGVKVTLLEA 211 (464)
Q Consensus 139 ~~i~~id~I~iTH~H~DHiggL~~---~~~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~~~~i----~~~~v~~~~a 211 (464)
..+.++|-+++||.|.||.-.-.. .....+++.-+.-.... +.+.....+..+..+++.++ +-++|.+.|+
T Consensus 128 ~~~p~~d~~~vsh~h~dhld~~~~~~~~~~~~~~wfvp~g~k~~--m~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPa 205 (343)
T KOG3798|consen 128 EDLPDLDFAVVSHDHYDHLDADAVKKITDRNPQIWFVPLGMKKW--MEGDGSSTVTELNWGESSEFVKNGKTYTIWCLPA 205 (343)
T ss_pred ccCCCCceeccccccccccchHHHHhhhccCccceeehhhhhhe--ecCCCCCceeEeeccchhceecCCcEEEEEEcch
Confidence 345789999999999999855432 12233343332221111 11111223444455554443 2367888898
Q ss_pred CCCCC-c---------eEEEEEeeCCcEEEEECCCCCCccccc-cccccCCCccEEEEeCCCCCCC----CCCCCHHHHH
Q 012419 212 NHCPG-A---------ALIHFRLQDGQCYLHTGDFRASRLMQS-YPLLVNHRVNVLYLDTTYCNPK----YKFPSKEDVL 276 (464)
Q Consensus 212 gH~~g-s---------~~~~i~~~~g~~ilytGD~~~~~~~~~-~~~l~~~~~DlLi~EsT~~~~~----~~~p~~~~~~ 276 (464)
.|.-+ + .+|.+.. .+.+++|.||+++++.... ... +..++|+..+-+.-..+. ++|-++++++
T Consensus 206 qHw~~R~L~D~Nk~LW~sw~v~g-~~nrfffaGDTGyc~~~F~~Ige-rfGpfdLAaiPiGaYePrWfmK~~HInPeEav 283 (343)
T KOG3798|consen 206 QHWGQRGLFDRNKRLWSSWAVIG-ENNRFFFAGDTGYCDGEFKKIGE-RFGPFDLAAIPIGAYEPRWFMKSQHINPEEAV 283 (343)
T ss_pred hhhcccccccCCcceeeeeEEec-CCceEEecCCCCcccHHHHHHHH-hcCCcceeeccccccCchhhcccccCCHHHHH
Confidence 88322 1 2455554 4469999999999984321 111 235688888877555443 3445555544
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecccccHH
Q 012419 277 NYVVRLTKNCLKKQPKTLVVVGAYSIGKE 305 (464)
Q Consensus 277 ~~l~~~i~~~l~~~~~~~vli~~~s~Gr~ 305 (464)
+ +.+ -++.....-|..++|.+|-|
T Consensus 284 ~----Ihk-dv~arns~gIHWGTf~l~~E 307 (343)
T KOG3798|consen 284 E----IHK-DVRAKNSIGIHWGTFHLGSE 307 (343)
T ss_pred H----HHH-HHhhhcceeEeeeeeecccc
Confidence 3 222 22333334477789988765
No 54
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=96.10 E-value=0.0024 Score=58.46 Aligned_cols=85 Identities=24% Similarity=0.258 Sum_probs=53.3
Q ss_pred CCCccEEEeCccchhhhcCccc--cCCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCCEEEECCEEEEEEEcCCCCCce
Q 012419 141 IKGCSAYFLTHFHYDHYGGLGK--RWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAA 218 (464)
Q Consensus 141 i~~id~I~iTH~H~DHiggL~~--~~~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~~~~i~~~~v~~~~agH~~gs~ 218 (464)
+..++.|+|| |.||+..... ..+..+||+++..++.+ .... -+.+..|+. .++|++|..++-.|+||.+
T Consensus 53 ~ggv~~IvLT--n~dHvR~A~~ya~~~~a~i~~p~~d~~~~----p~~~--D~~l~dge~-i~~g~~vi~l~G~ktpGE~ 123 (199)
T PF14597_consen 53 LGGVAWIVLT--NRDHVRAAEDYAEQTGAKIYGPAADAAQF----PLAC--DRWLADGEE-IVPGLWVIHLPGSKTPGEL 123 (199)
T ss_dssp TT--SEEE-S--SGGG-TTHHHHHHHS--EEEEEGGGCCC-----SS----SEEE-TT-B-SSTTEEEEEE-SSSSTTEE
T ss_pred cCCceEEEEe--CChhHhHHHHHHHHhCCeeeccHHHHhhC----CCCC--ccccccCCC-ccCceEEEEcCCCCCCcee
Confidence 4789999999 5599987763 34567999998866322 1111 134556662 3488888888778999999
Q ss_pred EEEEEeeCCcEEEEECCCCC
Q 012419 219 LIHFRLQDGQCYLHTGDFRA 238 (464)
Q Consensus 219 ~~~i~~~~g~~ilytGD~~~ 238 (464)
.++++ + ++++|||.-.
T Consensus 124 ALlle--d--~vLi~GDl~~ 139 (199)
T PF14597_consen 124 ALLLE--D--RVLITGDLLR 139 (199)
T ss_dssp EEEET--T--TEEEESSSEE
T ss_pred EEEec--c--ceEEecceee
Confidence 99987 3 4999999644
No 55
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.97 E-value=0.087 Score=55.06 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=52.0
Q ss_pred CCCccEEEeCccchhhhcCccc-------cCCCCcEEeCHHHHHHH-H-Hh-------------hc--cC----------
Q 012419 141 IKGCSAYFLTHFHYDHYGGLGK-------RWSHGPIYCSPLTARLV-R-MC-------------LL--VN---------- 186 (464)
Q Consensus 141 i~~id~I~iTH~H~DHiggL~~-------~~~~~~Iy~s~~t~~~l-~-~~-------------~~--~~---------- 186 (464)
-..|.+|+.||.|.||.||+.. ...+++|.++..-.+.. . .. ++ .+
T Consensus 162 ~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GFme~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~g 241 (655)
T COG2015 162 QRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGFMEEAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGCG 241 (655)
T ss_pred CCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchhHHHHHHHHhhhhhhhHhhhhhhhhccccCCCccCccccc
Confidence 3679999999999999999863 23467888886544321 1 00 11 00
Q ss_pred -------------CCceEEcCCCCEEEECCEEEEEEEc-CC-CCCceEEEE
Q 012419 187 -------------PSYIHPLELNTEHVIDGVKVTLLEA-NH-CPGAALIHF 222 (464)
Q Consensus 187 -------------~~~~~~v~~~~~~~i~~~~v~~~~a-gH-~~gs~~~~i 222 (464)
.......+.+++..|+|+++++--+ |- .|--+.++|
T Consensus 242 iGk~la~G~vsLiaPT~~I~~~gE~~~iDGV~~~Fq~tPgtEaPAEM~~y~ 292 (655)
T COG2015 242 IGKTLATGEVSLIAPTKIIEETGETLTIDGVEFEFQMTPGTEAPAEMHFYF 292 (655)
T ss_pred cccccccCceeeecceEEeeccCceEEEeceEEEEeeCCCCCCcHHHhhhh
Confidence 0123345678999999999998877 33 443344444
No 56
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.93 E-value=3.2 Score=41.10 Aligned_cols=92 Identities=13% Similarity=0.011 Sum_probs=50.8
Q ss_pred CCccEEEeCccchhhhcCccccCCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCCEEEECCEEEEEEEcCCCCCceEEE
Q 012419 142 KGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIH 221 (464)
Q Consensus 142 ~~id~I~iTH~H~DHiggL~~~~~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~~~~i~~~~v~~~~agH~~gs~~~~ 221 (464)
.+|+.+.+||.|.+|++++...... +++. ..+. +......-..++.+..++++..-.-.--.||..-+...+
T Consensus 124 d~i~~vv~t~~~~~hlgn~~~f~~s-p~l~-----~s~e--~~gr~~~pt~l~e~~~~~l~~~~~V~~TpGht~~~isvl 195 (302)
T KOG4736|consen 124 DQIDSVVITHKSPGHLGNNNLFPQS-PILY-----HSME--YIGRHVTPTELDERPYLKLSPNVEVWKTPGHTQHDISVL 195 (302)
T ss_pred hhcceeEEeccCcccccccccccCC-HHHh-----hhhh--hcCCccChhhhccCCccccCCceeEeeCCCCCCcceEEE
Confidence 7899999999999999987532111 2110 0010 000001112334444455542111122358888777777
Q ss_pred EEeeCC-cEEEEECCCCCCcc
Q 012419 222 FRLQDG-QCYLHTGDFRASRL 241 (464)
Q Consensus 222 i~~~~g-~~ilytGD~~~~~~ 241 (464)
+...++ .+++++||.-....
T Consensus 196 v~n~~~~GTv~itGDLf~~~~ 216 (302)
T KOG4736|consen 196 VHNVDLYGTVAITGDLFPREE 216 (302)
T ss_pred EEeecccceEEEEeecccCCc
Confidence 765432 38999999976543
No 57
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=65.60 E-value=9.6 Score=41.92 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=43.3
Q ss_pred CEEEEeEeccCCCCHHHHHHHHHhcCCCeEEEecccCCHHHHHHHHHHHHH
Q 012419 405 NITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFRE 455 (464)
Q Consensus 405 ~~~i~~i~~S~Had~~eL~~~v~~l~Pk~ViP~~~hg~~~~~~~l~~~l~~ 455 (464)
.+++..+.|=+-+|-..++.++..++|+++| ++||..+..+.|+.++..
T Consensus 536 s~~v~~iDyeGisDgrSik~ii~ql~Pr~lI--lvh~s~e~~r~~~~~c~~ 584 (764)
T KOG1135|consen 536 SCRVEKIDYEGISDGRSIKKIIAQLSPRKLI--LVHGSAEDTRDLKHTCAS 584 (764)
T ss_pred EEEEEEeeeeccccchhHHHHHhccCccEEE--EecCCchhhHHHHHHHHh
Confidence 4567778899999999999999999999999 999999999988887653
No 58
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=64.34 E-value=8.8 Score=34.35 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=21.7
Q ss_pred EEEeEeccC--CCCHHHHHHHHHhcCCCeEEEec
Q 012419 407 TIYGVPYSE--HSSFTELREFVQFLRPDKIIPTV 438 (464)
Q Consensus 407 ~i~~i~~S~--Had~~eL~~~v~~l~Pk~ViP~~ 438 (464)
.+.-+|.++ ..+.++..++++.++||.|||+|
T Consensus 130 Dvl~~p~~g~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 130 DVLFLPVGGPFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp SEEEEE--TTTS--HHHHHHHHHHCT-SEEEEES
T ss_pred CEEEecCCCCcccCHHHHHHHHHHcCCCEEEeCC
Confidence 344455555 46899999999999999999984
No 59
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=59.90 E-value=18 Score=38.99 Aligned_cols=94 Identities=6% Similarity=-0.102 Sum_probs=59.3
Q ss_pred cCCCcccccccccCCCcccc---cCCceeEEcCCCCCCC---CCCceEecCCCcC--CCCCccEEEeCccchhhhcCccc
Q 012419 91 CLFSPPMKKLKASNGKSTAT---HLKKIVDRSCPFYKKI---PGTPFTVDAFRYG--SIKGCSAYFLTHFHYDHYGGLGK 162 (464)
Q Consensus 91 ~~~~~~~~~l~~g~~~~~~~---~~~~~~lidcG~~~~~---~~~~~~id~f~~~--~i~~id~I~iTH~H~DHiggL~~ 162 (464)
...|-.|.++.+|+-..++. .-..-+++++|.+... .+....+++.... -...+-++-++|.|.||.+.++.
T Consensus 147 ev~gIkf~p~~aGhVlgacMf~veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~ 226 (668)
T KOG1137|consen 147 EVNGIKFWPYHAGHVLGACMFMVEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTW 226 (668)
T ss_pred ccCCeEEEeeccchhhhheeeeeeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhh
Confidence 33445555556666544443 3455667888886532 2233445554432 12567889999999999999985
Q ss_pred c----CCC-----CcEEeCHHHHHHHHHhhc
Q 012419 163 R----WSH-----GPIYCSPLTARLVRMCLL 184 (464)
Q Consensus 163 ~----~~~-----~~Iy~s~~t~~~l~~~~~ 184 (464)
. -.+ .|||+.-.+.+++..+..
T Consensus 227 vIh~~v~rGGR~L~PvFAlgrAqELllilde 257 (668)
T KOG1137|consen 227 VIHSTVPRGGRVLIPVFALGRAQELLLILDE 257 (668)
T ss_pred hHHhhccCCCceEeeeeecchHHHHHHHHHH
Confidence 2 222 699999999888765543
No 60
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=57.17 E-value=26 Score=36.21 Aligned_cols=142 Identities=8% Similarity=0.156 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEecccccHHHHHHHHHHHcCCeEEEcccHHHHHHhcCCCccccCccccCCCceEEEEeCCC
Q 012419 278 YVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSS 357 (464)
Q Consensus 278 ~l~~~i~~~l~~~~~~~vli~~~s~Gr~qell~l~~~~~~~I~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~v~~~~~ 357 (464)
.+.+..++.+.+.+ ..++++||+.--.+.++-+.++.+..++..-. |+-+ ...+.|+-+..
T Consensus 55 ~ya~~A~~Li~~d~-V~~ifGc~TSasRKaVlPvvE~~~~LL~Yp~~----YEG~------------E~S~nviYtGa-- 115 (363)
T PF13433_consen 55 TYAEKAEKLIREDG-VRAIFGCYTSASRKAVLPVVERHNALLFYPTQ----YEGF------------ECSPNVIYTGA-- 115 (363)
T ss_dssp HHHHHHHHHHHHS----EEEE--SHHHHHHHHHHHHHCT-EEEE-S------------------------TTEEE-S---
T ss_pred HHHHHHHHHHHhCC-ccEEEecchhhhHHHHHHHHHhcCceEEeccc----cccc------------cCCCceEEcCC--
Confidence 34444445555443 46889999887777888888888776664422 1111 11122332211
Q ss_pred CChhhHHHHHhhhCCCCC-CEEEEeeccccccCCccccccccccCCCCC-EEEEeEeccCCCCHHHHHHHHHhcCCCeEE
Q 012419 358 LKFETLKDYLKPYGNQYA-AVLAFRPTGWTYSETVGNQLDLIRPLSRGN-ITIYGVPYSEHSSFTELREFVQFLRPDKII 435 (464)
Q Consensus 358 l~~g~~~~~l~~~~~~~~-~~i~~~~tG~~~~~~~g~~l~~~~~~~~g~-~~i~~i~~S~Had~~eL~~~v~~l~Pk~Vi 435 (464)
....-+...++-+..+.+ .-+.+.=|.|.++.+..+-+..+-....|+ +....+|+ +|+++..+++=|+..+|.-|+
T Consensus 116 ~PNQ~~~pl~~~~~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~pl-g~td~~~ii~~I~~~~Pd~V~ 194 (363)
T PF13433_consen 116 APNQQLLPLIDYLLENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPL-GATDFDPIIAEIKAAKPDFVF 194 (363)
T ss_dssp -GGGTHHHHHHHHHHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S--HHHHHHHHHHHHHHT-SEEE
T ss_pred CchhhHHHHHHHHHhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecC-CchhHHHHHHHHHhhCCCEEE
Confidence 122223333333333444 555554466777654432221110112333 23455787 669999999999999999999
Q ss_pred Eecc
Q 012419 436 PTVN 439 (464)
Q Consensus 436 P~~~ 439 (464)
.|++
T Consensus 195 stlv 198 (363)
T PF13433_consen 195 STLV 198 (363)
T ss_dssp EE--
T ss_pred EeCc
Confidence 8876
No 61
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=57.05 E-value=5 Score=30.57 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=29.5
Q ss_pred cCCceeEE-cCCCCCCCCCCceEecCCCcCCCCCccEEEeCccc-hhhhcC
Q 012419 111 HLKKIVDR-SCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFH-YDHYGG 159 (464)
Q Consensus 111 ~~~~~~li-dcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H-~DHigg 159 (464)
.+..++++ .||...... ... ....+.+++.||+|+.+ .+++||
T Consensus 19 ~d~~rYlFGn~gEGtQR~----~~e--~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 19 FDSRRYLFGNCGEGTQRA----CNE--HKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred eCCceEEeccCCcHHHHH----HHH--cCCCccccceEEECCCCcccccCC
Confidence 56788999 999853210 001 01134789999999999 999986
No 62
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=53.41 E-value=32 Score=30.14 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=31.8
Q ss_pred CEEEEeEeccCCCCHHHHHHHHHhcCCCeEEEecccCCHHHHHHHHHHH
Q 012419 405 NITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFF 453 (464)
Q Consensus 405 ~~~i~~i~~S~Had~~eL~~~v~~l~Pk~ViP~~~hg~~~~~~~l~~~l 453 (464)
+.++ +-+|.|.+.+.|.+.++.++|++|+ + .++...+.|++.+
T Consensus 24 ~f~v--~~Lsa~~n~~~L~~q~~~f~p~~v~--i--~~~~~~~~l~~~~ 66 (129)
T PF02670_consen 24 KFEV--VALSAGSNIEKLAEQAREFKPKYVV--I--ADEEAYEELKKAL 66 (129)
T ss_dssp TEEE--EEEEESSTHHHHHHHHHHHT-SEEE--E--SSHHHHHHHHHHH
T ss_pred ceEE--EEEEcCCCHHHHHHHHHHhCCCEEE--E--cCHHHHHHHHHHh
Confidence 4444 4688899999999999999999998 3 3555566566555
No 63
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=52.69 E-value=19 Score=33.75 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=50.9
Q ss_pred cEEEEECCCCCCccc-cccccccCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccccHH
Q 012419 228 QCYLHTGDFRASRLM-QSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKE 305 (464)
Q Consensus 228 ~~ilytGD~~~~~~~-~~~~~l~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~Gr~ 305 (464)
-.|+||||-++..-. .....+...++-++=++|....- +..++++....+.++|..+.++-+...|++-.||.|-.
T Consensus 4 ~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw--~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGAD 80 (192)
T PF06057_consen 4 LAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFW--SERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGAD 80 (192)
T ss_pred EEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHh--hhCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCch
Confidence 368999999886321 11223445778888888754432 23567888889999998888774444566666888754
No 64
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=50.21 E-value=15 Score=33.27 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.7
Q ss_pred ccCCCCHHHHHHHHHhcCCCeEEEec
Q 012419 413 YSEHSSFTELREFVQFLRPDKIIPTV 438 (464)
Q Consensus 413 ~S~Had~~eL~~~v~~l~Pk~ViP~~ 438 (464)
-+.|++.+++.++++.++|++|||+|
T Consensus 168 ~~~h~~~~~~~~~~~~~~~~~~il~H 193 (194)
T PF12706_consen 168 GPGHMTLEEALELAKELKAKKVILIH 193 (194)
T ss_dssp CTTSBBHHHHHHHHHHHTTSEEEEES
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 48999999999999999999999763
No 65
>PRK00685 metal-dependent hydrolase; Provisional
Probab=44.03 E-value=31 Score=32.39 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHHHhcCCCeEEEec
Q 012419 414 SEHSSFTELREFVQFLRPDKIIPTV 438 (464)
Q Consensus 414 S~Had~~eL~~~v~~l~Pk~ViP~~ 438 (464)
+.|.+.+|..++++.++||.+||+|
T Consensus 168 ~~h~~~~ea~~~~~~~~~k~~v~~H 192 (228)
T PRK00685 168 NFTMGPEDAALAVELIKPKIVIPMH 192 (228)
T ss_pred ccccCHHHHHHHHHhhCCCEEEEec
Confidence 4599999999999999999999885
No 66
>PRK00055 ribonuclease Z; Reviewed
Probab=41.81 E-value=39 Score=32.47 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=24.1
Q ss_pred ccCCCCHHHHHHHHHhcCCCeEEEecc
Q 012419 413 YSEHSSFTELREFVQFLRPDKIIPTVN 439 (464)
Q Consensus 413 ~S~Had~~eL~~~v~~l~Pk~ViP~~~ 439 (464)
.++|++.+|..++.+.++|++++++|.
T Consensus 207 ~~~H~~~~~a~~~~~~~~~~~~vl~H~ 233 (270)
T PRK00055 207 EYGHSTARQAAEIAKEAGVKRLILTHF 233 (270)
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEee
Confidence 578999999999999999999996643
No 67
>PRK06683 hypothetical protein; Provisional
Probab=37.52 E-value=1.9e+02 Score=23.10 Aligned_cols=52 Identities=13% Similarity=0.041 Sum_probs=37.1
Q ss_pred HHHHhCCCeEEEEecccccHH-HHHHHHHHHcCCeEEEcccHHHHHHhcCCCc
Q 012419 285 NCLKKQPKTLVVVGAYSIGKE-SVFLAISKALGVKIYANASRRRVLQSFDWPE 336 (464)
Q Consensus 285 ~~l~~~~~~~vli~~~s~Gr~-qell~l~~~~~~~I~v~~~~~~i~~~~~~~~ 336 (464)
+.++++.-.+|+|+..+--+. +.+..+++..++|++......++-+..|.+.
T Consensus 21 kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~eLG~A~G~~~ 73 (82)
T PRK06683 21 EAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQV 73 (82)
T ss_pred HHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCcc
Confidence 345555545777876655443 4567888999999988888888888887653
No 68
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=34.04 E-value=89 Score=36.51 Aligned_cols=105 Identities=10% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCccEEEE-eCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEec--------ccccHHHHHHHHHHHcCCeEEE
Q 012419 251 HRVNVLYL-DTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGA--------YSIGKESVFLAISKALGVKIYA 321 (464)
Q Consensus 251 ~~~DlLi~-EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~--------~s~Gr~qell~l~~~~~~~I~v 321 (464)
.++|.|++ |+.|++-.. .....+.+++..-++-+.+....++|+|. .|.+|...+++++.+-++.|..
T Consensus 970 ~~pdaLVlWEAQFGDF~N---GAQtiIDefIss~e~KWgQ~S~vvlLLPHGyEGQGPdHSSaRiERfLqlcAe~nm~Va~ 1046 (1228)
T PRK12270 970 ERPDALVLWEAQFGDFAN---GAQTIIDEFISSGEAKWGQRSGVVLLLPHGYEGQGPDHSSARIERFLQLCAEGNMTVAQ 1046 (1228)
T ss_pred CCCcceeeehhhhccccc---chHHHHHHHHhhhHhhhccccceEEEccCCcCCCCCCcchHHHHHHHHhhccCCeEEEc
Confidence 45665554 999987432 34556788887776666555544555653 5778888899999999998888
Q ss_pred cccHHHHHHhcCCCccccCccccCCCceEEEEeCCCCChhhH
Q 012419 322 NASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETL 363 (464)
Q Consensus 322 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~v~~~~~l~~g~~ 363 (464)
.+.-...+..+... ......+|.|+++|.+||+..-.
T Consensus 1047 psTPA~yFHLLRrq-----a~~~~~rPLvVfTPKSmLR~KaA 1083 (1228)
T PRK12270 1047 PSTPANYFHLLRRQ-----ALSGPRRPLVVFTPKSMLRLKAA 1083 (1228)
T ss_pred cCChHHHHHHHHHH-----hhcCCCCCeEEEChHHhhcchhh
Confidence 77644333332211 11235678888888888765433
No 69
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=29.05 E-value=63 Score=33.28 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=23.0
Q ss_pred cCCCCHHHHHHHHHhcCCCeEEEec
Q 012419 414 SEHSSFTELREFVQFLRPDKIIPTV 438 (464)
Q Consensus 414 S~Had~~eL~~~v~~l~Pk~ViP~~ 438 (464)
..|.+.+|..++++.++|+.|||+|
T Consensus 258 ~~hm~p~ea~~~a~~l~ak~vIpiH 282 (355)
T PRK11709 258 TDKMTSIDILRMAESLNAKVVIPVH 282 (355)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 3599999999999999999999985
No 70
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=26.46 E-value=8.4e+02 Score=26.63 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEEec---ccccHHHHHHHHHHHcCCeEEEcccHHHHH
Q 012419 270 PSKEDVLNYVVRLTKNCLKKQPKTLVVVGA---YSIGKESVFLAISKALGVKIYANASRRRVL 329 (464)
Q Consensus 270 p~~~~~~~~l~~~i~~~l~~~~~~~vli~~---~s~Gr~qell~l~~~~~~~I~v~~~~~~i~ 329 (464)
++..+.++++++.+.+.+.+..+ +++++- ...|-++++.+++...++|+++-.+.+-.+
T Consensus 189 ~sd~e~~~e~i~~i~~lI~~ak~-p~ILad~~~~r~~~~~~~~~l~~~t~~p~~~~pmGKg~i 250 (557)
T COG3961 189 TSDPEALSEVIDTIAELINKAKK-PVILADALVSRFGLEKELKKLINATGFPVATLPMGKGVI 250 (557)
T ss_pred CCCHHHHHHHHHHHHHHHhccCC-cEEecchhhhhhhhHHHHHHHHHhcCCCeEEeecccccc
Confidence 34456777888888888875443 566653 344667888999999999999887755333
No 71
>PRK02113 putative hydrolase; Provisional
Probab=25.52 E-value=1.1e+02 Score=29.34 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=23.2
Q ss_pred ccCCCCHHHHHHHHHhcCCCeEEEec
Q 012419 413 YSEHSSFTELREFVQFLRPDKIIPTV 438 (464)
Q Consensus 413 ~S~Had~~eL~~~v~~l~Pk~ViP~~ 438 (464)
..+|++.+|..++++.++|++++.+|
T Consensus 197 ~~~H~t~~~a~~~~~~~~~k~l~l~H 222 (252)
T PRK02113 197 HPTHQSLEEALENIKRIGAKETYLIH 222 (252)
T ss_pred CCCcCCHHHHHHHHHHhCCCEEEEEc
Confidence 45799999999999999999999554
No 72
>PRK02126 ribonuclease Z; Provisional
Probab=25.46 E-value=74 Score=32.44 Aligned_cols=30 Identities=3% Similarity=0.045 Sum_probs=26.2
Q ss_pred ccCCCCHHHHHHHHHhcCCCeEEEecccCCHH
Q 012419 413 YSEHSSFTELREFVQFLRPDKIIPTVNVWNAA 444 (464)
Q Consensus 413 ~S~Had~~eL~~~v~~l~Pk~ViP~~~hg~~~ 444 (464)
-++|++..++.++.+..++++++ ++|-.+.
T Consensus 287 ~~gH~t~~~a~~lA~~a~vk~Lv--LtH~sp~ 316 (334)
T PRK02126 287 RKNHLTARQAGRLAREAGVKRLL--PFHFSPR 316 (334)
T ss_pred cCCCCCHHHHHHHHHHcCCCEEE--EEecCcc
Confidence 57899999999999999999999 6676654
No 73
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=23.80 E-value=3.7e+02 Score=21.29 Aligned_cols=51 Identities=18% Similarity=0.140 Sum_probs=35.1
Q ss_pred HHHHhCCCeEEEEecccccHH-HHHHHHHHHcCCeEEEcccHHHHHHhcCCC
Q 012419 285 NCLKKQPKTLVVVGAYSIGKE-SVFLAISKALGVKIYANASRRRVLQSFDWP 335 (464)
Q Consensus 285 ~~l~~~~~~~vli~~~s~Gr~-qell~l~~~~~~~I~v~~~~~~i~~~~~~~ 335 (464)
..++++.-.+|++......+. +.+..+++..++|++..+...++-...|.+
T Consensus 21 kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~eLG~a~G~~ 72 (82)
T PRK13602 21 KALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKLGKACGIE 72 (82)
T ss_pred HHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCC
Confidence 345555555777766554333 456788899999998888877777777754
No 74
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=23.78 E-value=1.2e+02 Score=29.84 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=23.2
Q ss_pred ccCCCCHHHHHHHHHhcCCCeEEEec
Q 012419 413 YSEHSSFTELREFVQFLRPDKIIPTV 438 (464)
Q Consensus 413 ~S~Had~~eL~~~v~~l~Pk~ViP~~ 438 (464)
-.+|++.+|..++.+..++++++.+|
T Consensus 241 ~~~H~t~~~a~~~~~~~~~k~lvltH 266 (299)
T TIGR02651 241 EYGHSTAAQAAEIAKEANVKRLILTH 266 (299)
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 36899999999999999999999554
No 75
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=22.30 E-value=4.1e+02 Score=21.21 Aligned_cols=50 Identities=6% Similarity=-0.033 Sum_probs=34.7
Q ss_pred HHHHhCCCeEEEEecccccHH-HHHHHHHHHcCCeEEEcccHHHHHHhcCC
Q 012419 285 NCLKKQPKTLVVVGAYSIGKE-SVFLAISKALGVKIYANASRRRVLQSFDW 334 (464)
Q Consensus 285 ~~l~~~~~~~vli~~~s~Gr~-qell~l~~~~~~~I~v~~~~~~i~~~~~~ 334 (464)
+.++++.-.+|+|+..+.-+. +.+...++..++|++......++-...|.
T Consensus 18 kaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~eLG~A~G~ 68 (82)
T PRK13601 18 KAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGVMCGI 68 (82)
T ss_pred HHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHHHHHHHCC
Confidence 344555445777776655333 45677889999999888888777777764
No 76
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=21.47 E-value=1.6e+02 Score=30.93 Aligned_cols=76 Identities=18% Similarity=0.131 Sum_probs=48.9
Q ss_pred cEEEEECCCCCCccc-cccccccCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccccHH
Q 012419 228 QCYLHTGDFRASRLM-QSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKE 305 (464)
Q Consensus 228 ~~ilytGD~~~~~~~-~~~~~l~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~Gr~ 305 (464)
..|+|+||-++..-. .....+...++-++=.|+....= ...++++.-..+.++|+.+-++=++.+|++-.||.|--
T Consensus 262 ~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsLRYfW--~~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfGAD 338 (456)
T COG3946 262 VAVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSLRYFW--SERTPEQIAADLSRLIRFYARRWGAKRVLLIGYSFGAD 338 (456)
T ss_pred EEEEEecCCchhhhhHHHHHHHHHCCCceeeeehhhhhh--ccCCHHHHHHHHHHHHHHHHHhhCcceEEEEeecccch
Confidence 469999999875421 11123334677777777754432 23566778888888887776655555677767888753
No 77
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=21.40 E-value=87 Score=29.77 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=23.8
Q ss_pred cCCCCHHHHHHHHHhcCCCeEEEecccCCH
Q 012419 414 SEHSSFTELREFVQFLRPDKIIPTVNVWNA 443 (464)
Q Consensus 414 S~Had~~eL~~~v~~l~Pk~ViP~~~hg~~ 443 (464)
-.|++.+|+.++.+.++|+++|.+ |-+.
T Consensus 186 ~~H~~~~~~~~~~~~~~~~~lil~--H~~~ 213 (238)
T TIGR03307 186 RNHNDLTRALAINEQLRPKQVILT--HISH 213 (238)
T ss_pred CCcCCHHHHHHHHHHcCCCEEEEE--eccc
Confidence 369999999999999999999955 5543
No 78
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=21.33 E-value=82 Score=30.79 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=26.4
Q ss_pred eccCCCCHHHHHHHHHhcCCCeEEEecccCCHH
Q 012419 412 PYSEHSSFTELREFVQFLRPDKIIPTVNVWNAA 444 (464)
Q Consensus 412 ~~S~Had~~eL~~~v~~l~Pk~ViP~~~hg~~~ 444 (464)
+.|.|-+.++.+++++.++|++++ +.|=+..
T Consensus 208 h~~~h~~~~~a~~~~~~~~~~riv--LtHls~~ 238 (269)
T COG1235 208 HLSNHLSAEEALELIEKLKPKRLV--LTHLSHK 238 (269)
T ss_pred CCCCchhHHHHHHHHHhCCcceEE--EEecCCC
Confidence 599999999999999999999888 5565443
No 79
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=21.23 E-value=37 Score=37.80 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.5
Q ss_pred CCCCccEEEeCccchhhhcCcc
Q 012419 140 SIKGCSAYFLTHFHYDHYGGLG 161 (464)
Q Consensus 140 ~i~~id~I~iTH~H~DHiggL~ 161 (464)
.+.+||+|||||.-.|.++|+.
T Consensus 78 HldrVdaVLLthpg~dNLpgin 99 (934)
T KOG3592|consen 78 HLDRVDAVLLTHPGADNLPGIN 99 (934)
T ss_pred HHhhhhhhhhcccccCccccch
Confidence 3478999999999999999885
Done!