BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012420
(464 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/461 (86%), Positives = 436/461 (94%)
Query: 1 MARAVNASVYSPELLARNYGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKR 60
+ RA++AS+YSPEL+AR +GS+P + LRR+L+IL ALG F+LKL IDQ+ G L++N +KR
Sbjct: 87 LGRAIDASIYSPELIARKHGSQPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKR 146
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
A ELRRIFTRLGPTFVKLGQGLSTRPD+CPP+YLEEL+ELQDALPTFPDAEAF+CIEREL
Sbjct: 147 AIELRRIFTRLGPTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIEREL 206
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVG 180
L+L++IFSS+SP PIAAASLGQVYKAQL+YSGQ+VAVKVQRPGIEEAIGLDFYLIRGVG
Sbjct: 207 DLSLETIFSSVSPEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVG 266
Query: 181 FLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDY 240
LINKYVD ITTDV+ LIDEFA RVYQELNYVQE QNARRFKKLYADK DVLVPDIFWDY
Sbjct: 267 KLINKYVDFITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDY 326
Query: 241 TSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLL 300
TS KVLTMEWVEG KLNEQ+AIESQGLKVLDLVNTGIQCSLRQLLEYG+FHADPHPGNLL
Sbjct: 327 TSRKVLTMEWVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLL 386
Query: 301 ATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPI 360
ATP+GKLAFLDFGMMSETPEEARFAIIGHVVH+VNRDYEAMARDYYAL FLSPDVDVTPI
Sbjct: 387 ATPDGKLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPI 446
Query: 361 VPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYA 420
+PALR+FFDDALN +VSELNFKT+VDGLGAV YQYPFNVP YYALILRSLTVLEGLALYA
Sbjct: 447 IPALRDFFDDALNYTVSELNFKTLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYA 506
Query: 421 DPNFKVLAASYPYFAKRLLTDPNPYLRDALVELLFKDGRFR 461
DPNFKVLAASYPYFAKRLLTDPNPYLRDAL+ELLFKDG+FR
Sbjct: 507 DPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGKFR 547
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 501 bits (1289), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/452 (52%), Positives = 323/452 (71%), Gaps = 1/452 (0%)
Query: 10 YSPELLARNYGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFT 69
Y P+L+ Y RP+Q+L R + IL L F L + ++ G R +A +LR + T
Sbjct: 53 YHPDLIMEFYRKRPLQVLGRLINILFPLLRFILGIWWEKLRGKDPTVSRAKAIQLRELLT 112
Query: 70 RLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFS 129
LGPT++K+GQ LSTRPD+ PP +L+EL+ LQD LP+FP+ A+ IE ELG + I++
Sbjct: 113 NLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELGAPAEEIYA 172
Query: 130 SISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYVDI 189
+SP PIAAASLGQVYK +LK +G+ VAVKVQRP + I LD Y++R + + V
Sbjct: 173 ELSPEPIAAASLGQVYKGKLK-TGEAVAVKVQRPDLVRRITLDIYIMRSLSLWARRSVKR 231
Query: 190 ITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTME 249
+ +D+VA+ DE ASRV++E+NY QE N +F +LY ++ VP I+W YT +VLTME
Sbjct: 232 LRSDLVAITDELASRVFEEMNYYQEAINGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTME 291
Query: 250 WVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAF 309
WVEG+KL AI++QG+ LV G+QCSLRQLLE+G+FHADPHPGNLLA +G+LA+
Sbjct: 292 WVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLAMADGRLAY 351
Query: 310 LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFD 369
LDFGMMS R+ +I VVH+VNRD++++A+DY LDFL PD D+ PI+PAL F
Sbjct: 352 LDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFG 411
Query: 370 DALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAA 429
+AL +SV+ELNFK+I D + A++Y++PF VPAYYALI+RS+ LEG+A+ DPNFKVL+
Sbjct: 412 NALGASVAELNFKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVLSK 471
Query: 430 SYPYFAKRLLTDPNPYLRDALVELLFKDGRFR 461
+YPY AKRLLTD + LR +L ELLFK+G FR
Sbjct: 472 AYPYIAKRLLTDQSEELRTSLKELLFKEGSFR 503
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 310/457 (67%), Gaps = 2/457 (0%)
Query: 6 NASVYSPELLARNYGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELR 65
N Y+ + +A Y RP ++L R L+++ + G F LL DQ G ++ KR+RA +LR
Sbjct: 15 NIRRYNAQAIANYYRRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAEDLR 74
Query: 66 RIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLD 125
+ T+LGPTF+K+GQ LSTRPD+ ++LEEL +LQD LP F + AF +E +LG+ +D
Sbjct: 75 ELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKVD 134
Query: 126 SIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINK 185
+ IS P+AAASLGQVY+A L +SG+ VAVKVQRP + + LD YL+R +
Sbjct: 135 EAYREISAHPVAAASLGQVYRAML-FSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFGR 193
Query: 186 YVDI-ITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGK 244
++ + + D+ ++DEF ++++E++Y+ EG+NA +F + + +V VP I+W Y++ K
Sbjct: 194 FLPLNLGHDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYSNQK 253
Query: 245 VLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPE 304
VLT+EW++G KL + I + GL D++ G+ LRQLLE+G+FHADPHPGNL AT +
Sbjct: 254 VLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLD 313
Query: 305 GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPAL 364
G++A++DFGMM + + I +V ++N+DY A+ D+ AL FL+P+ D+TPI+PAL
Sbjct: 314 GRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPAL 373
Query: 365 RNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNF 424
N F A+ SV + NFKTI D ++Y YPF VPA +ALI+RSL EGLAL DPNF
Sbjct: 374 ENVFGSAIGQSVQDFNFKTITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNF 433
Query: 425 KVLAASYPYFAKRLLTDPNPYLRDALVELLFKDGRFR 461
K++ +YPY A+RLLT +P LR L+++LFK+G+F+
Sbjct: 434 KIVEVAYPYVARRLLTGESPQLRRQLIDVLFKNGKFQ 470
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/443 (45%), Positives = 298/443 (67%), Gaps = 9/443 (2%)
Query: 19 YGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKL 78
Y +P+ LLRR QI + L D+ DQ + RAAELR++ LGP +VK+
Sbjct: 78 YKKKPLILLRRLAQIGTTFSYWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKI 137
Query: 79 GQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAA 138
Q +S+RPD+ PP YL+ELS LQD + F AF+ IE ELGL +D +FS ISP P+AA
Sbjct: 138 AQAVSSRPDLIPPIYLDELSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAA 197
Query: 139 ASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDVVALI 198
ASLGQVY+A+L+ SG++VAVKVQRPG+ AI LD ++R + LI K +D+ A++
Sbjct: 198 ASLGQVYQARLRRSGKVVAVKVQRPGVRAAIALDTLILRYIAGLIKK-AGRFNSDLEAVV 256
Query: 199 DEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNE 258
DE+A+ +++E++Y+ E QN +F+KLY +DVLVP ++ +Y++ KVL MEWVEG KLNE
Sbjct: 257 DEWATSLFKEMDYLNEAQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNE 316
Query: 259 QVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSET 318
+ L LV G+ CS QLLEYG++HADPHPGN L T +G+LA+LDFGMM +
Sbjct: 317 --------VNDLYLVEVGVYCSFNQLLEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGDF 368
Query: 319 PEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSE 378
E R + +H+VNRD++A+A+D+ L L P + + + AL + F DA++ V
Sbjct: 369 RPELRDGFMEACLHLVNRDFKALAKDFVTLGLLPPTAEKSAVTKALTDVFQDAISRGVRN 428
Query: 379 LNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRL 438
++F ++ LG +Y++ F +P Y++L++RSL VLEG+A+ PN+KVL ++YP+ A+++
Sbjct: 429 ISFGDLLGDLGKTMYRFKFRIPPYFSLVIRSLAVLEGIAIGISPNYKVLGSTYPWIARKI 488
Query: 439 LTDPNPYLRDALVELLFKDGRFR 461
LTD +P L+ +L LL+++G FR
Sbjct: 489 LTDSSPQLKSSLQNLLYEEGVFR 511
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 360 bits (925), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 183/456 (40%), Positives = 283/456 (62%), Gaps = 4/456 (0%)
Query: 10 YSPELL-ARNYGSRP--VQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRR 66
YSPE + ++ SR V L+ R ++I+ LG + L D G ++ RA +LR
Sbjct: 113 YSPETVRSKVLESRGAVVSLVSRGVEIVWTLGLYWSTLTYDFLVGRDEEVVPFRARQLRN 172
Query: 67 IFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDS 126
+ LGP+F+K GQ L+ RPDI +Y+ EL LQD +P FP+ AF+ IE ELG L++
Sbjct: 173 LLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQPLEN 232
Query: 127 IFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKY 186
IFS IS IAAASLGQVY+A L+ +G+ VA+KVQRP IE I D +L R + +N +
Sbjct: 233 IFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFLNGF 292
Query: 187 -VDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKV 245
+ + + ++DEF ++ +EL+Y E +N F + + D V +P ++ + +V
Sbjct: 293 SLQKLGCNAELIVDEFGEKLLEELDYTLEARNIEDFLENFKDDPTVKIPGVYKNLCGPRV 352
Query: 246 LTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEG 305
L MEW++G++ + AI+ G+ + + G+ +LRQLLE+G FH DPHPGN+ A +G
Sbjct: 353 LVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQDG 412
Query: 306 KLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALR 365
++A++DFG ++ ++ + +I VVH VN DY MA D+ L FL+ D DV+PIVPAL
Sbjct: 413 RIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVPALE 472
Query: 366 NFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFK 425
+ ++ +++ NF+++ ++Y +P +P ++L++RSL EG+ P+FK
Sbjct: 473 AIWQNSAGKGLADFNFRSVTGQFNKLVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFK 532
Query: 426 VLAASYPYFAKRLLTDPNPYLRDALVELLFKDGRFR 461
L +YPY AKRLLTDPNP LR+ L+++LFKDG F+
Sbjct: 533 FLEVAYPYVAKRLLTDPNPALRERLIQVLFKDGVFQ 568
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 272 bits (695), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 143/395 (36%), Positives = 236/395 (59%), Gaps = 4/395 (1%)
Query: 53 LDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEA 112
L Q +R++A +R LGPTF+K+GQ STR D+ P EY+EELS+LQD +P F +A
Sbjct: 77 LQQRRRRQAKWIRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQA 136
Query: 113 FSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLD 172
IE ELG + ++ S P P+AAASLGQV+KAQL ++G+ V VKVQRPG+++ +D
Sbjct: 137 AGIIEEELGKPIAKLYRSFDPVPLAAASLGQVHKAQL-HTGEDVVVKVQRPGLKKLFTID 195
Query: 173 FYLIRGVG-FLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 231
+++ + + N D + +E ++QE +Y++EG++A F++ + ++ V
Sbjct: 196 LAILKKIAQYFQNHPKWGRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWV 255
Query: 232 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 291
VP ++W YTS ++LT+E++ G+K++ A+E+ GL+ +L G + L QLL +G+FH
Sbjct: 256 KVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFH 315
Query: 292 ADPHPGNLLATPE-GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDF 350
ADPHPGNL +PE G+L F DFGMM E + + ++ + + ++ E + AL
Sbjct: 316 ADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGA 375
Query: 351 LSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSL 410
L D+ PI +++ D+ ++ E + I D L + Y PF PA + ++R+
Sbjct: 376 LKETEDMGPIRRSVQFLLDNFMDKPFEEQSITKISDDLYEIAYDQPFRFPATFTFVMRAF 435
Query: 411 TVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPY 445
+ LEG+ DP+F +A + P FA +++ + N +
Sbjct: 436 STLEGVGKGLDPDFNFMAVAQP-FALQIMNNSNGF 469
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 266 bits (680), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 235/403 (58%), Gaps = 6/403 (1%)
Query: 55 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 114
Q + +RA L + LGPTF+K+GQ LSTR DI P EY+E ++LQD +P F +A +
Sbjct: 52 QRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIA 111
Query: 115 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFY 174
IE+EL +D IF +P+A+ASLGQV++A L +G+ V VKVQRPG++ + LDF
Sbjct: 112 VIEQELHGAIDEIFQQFEVTPLASASLGQVHRAVLP-TGEAVVVKVQRPGLDSLLNLDFE 170
Query: 175 LIRGVGFLINKYVDIITT-----DVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 229
L+ L +++ ++ A+ EF S ++ E++Y+ EG+NA RF++ +AD
Sbjct: 171 LLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNFADYP 230
Query: 230 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 289
V VP+I+W YT+ VLT+E++ G+K++++ A+E+ G+ + ++ TGI L+QLL G+
Sbjct: 231 RVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGF 290
Query: 290 FHADPHPGNLLATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALD 349
F +DPHPGN+ +G L F DFG M+E A+ ++ ++ +D + +
Sbjct: 291 FQSDPHPGNMAVDSQGDLIFYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMG 350
Query: 350 FLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRS 409
+ P D++PI + D+ + + F + + + A+ Q PF +P IL+S
Sbjct: 351 LVEPKGDLSPIKRIINFLLDNFRDKPIDIKAFDQVGEEVYAMFQQQPFRLPPQMTFILKS 410
Query: 410 LTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALVE 452
++ L+G+A DP + ++AAS P+ + P L AL++
Sbjct: 411 ISTLDGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQ 453
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 206/379 (54%), Gaps = 2/379 (0%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
A LR LGP F+K GQ LSTRPD+ P +Y EL++LQD +P F + IE+ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIR-GV 179
G +++ +++ PIA+AS+ QV+KA+L +SG+ VAVKV RP + I D L+R G
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGEQVAVKVLRPNLLPVIEQDLSLMRFGA 169
Query: 180 GFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWD 239
G++ + D ++ EF ++ EL+ ++E NA + + + + + ++VP +F+D
Sbjct: 170 GWVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDMLIVPKVFYD 229
Query: 240 YTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNL 299
Y + VLT+EW++G +++ +++ G+ + L + G++ Q+ G+FHAD HPGN+
Sbjct: 230 YCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289
Query: 300 LATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTP 359
L + + LDFG++ + + + + + NRDY +A + ++ D
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349
Query: 360 IVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALY 419
+ A+R + N +S+++F ++ L V ++ + L+ ++L +EGL
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 420 ADPNFKVLAASYPYFAKRL 438
DP+ + + P+ K +
Sbjct: 410 LDPDLDLWKTAKPFLVKWM 428
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 194/371 (52%), Gaps = 5/371 (1%)
Query: 71 LGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSS 130
LGP FVK GQ LSTR D+ PPEY +EL+ LQD +P F A +ER LG ++ +F
Sbjct: 59 LGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFVD 118
Query: 131 ISPSPIAAASLGQVYKAQLKY----SGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINK- 185
P+A+AS+ QV+KA L+ G+ VAVKV RPGI I D L+R + + K
Sbjct: 119 FDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVEKL 178
Query: 186 YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKV 245
+ D ++ EF ++ EL+ + E NA + ++ + + ++VP++F+DY+S +V
Sbjct: 179 FADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSREV 238
Query: 246 LTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEG 305
LT+EW+ G+ + + + G+ + L G++ Q+ +G+FHAD HPGN+ +G
Sbjct: 239 LTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFVAADG 298
Query: 306 KLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALR 365
+ LDFG++ + + + + + NRDY +A + ++ D + A+R
Sbjct: 299 RYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESGWVPRDTRAEELEAAVR 358
Query: 366 NFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFK 425
+ +SE++F ++ L ++ + L+ ++L +EGL DP
Sbjct: 359 TVCEPIFEKPLSEISFGMVLLRLFETSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELD 418
Query: 426 VLAASYPYFAK 436
+ + P+ K
Sbjct: 419 LWDTAKPFLTK 429
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 204/379 (53%), Gaps = 2/379 (0%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
A LR LGP F+K GQ LSTRPD+ P +Y EL++LQD +P F + IE+ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIR-GV 179
G +++ +++ PIA+AS+ QV+KA+L +SG+ VAVKV RP + I D L+R G
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGERVAVKVLRPNLLPLIEQDLSLMRFGA 169
Query: 180 GFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWD 239
++ + D + ++ EF ++ EL+ ++E NA + + + + ++VP +F+D
Sbjct: 170 AWVERLFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYD 229
Query: 240 YTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNL 299
Y + VLT+EW++G + + +++ G+ + L + G++ Q+ G+FHAD HPGN+
Sbjct: 230 YCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289
Query: 300 LATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTP 359
L + + LDFG++ + + + + + NRDY +A + ++ D
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349
Query: 360 IVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALY 419
+ A+R + N +S+++F ++ L V ++ + L+ ++L +EGL
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 420 ADPNFKVLAASYPYFAKRL 438
DP+ + + P+ K +
Sbjct: 410 LDPDLDLWKTAKPFLVKWM 428
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 218/437 (49%), Gaps = 22/437 (5%)
Query: 13 ELLARNYGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLG 72
EL+ Y P +L RR+L F LK ++R G+ R A +R F LG
Sbjct: 23 ELVPARYQPWPGRLARRSL--------FWLK---NKRQGL------NRGARIRLAFEALG 65
Query: 73 PTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSIS 132
P F+K GQ LSTR D+ PP+ EEL+ LQD +P F A IE LG T++++F
Sbjct: 66 PIFIKFGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQAARRQIEASLGCTIETLFDDFD 125
Query: 133 PSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYV-DIIT 191
+P+A+AS+ QV+ A+LK +G+ + +KV RP IE I D L++ + L+ ++V
Sbjct: 126 ETPLASASIAQVHTARLKENGREIVIKVIRPDIEPVIEADLRLMQALARLVARFVPQSGR 185
Query: 192 TDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWV 251
+ +++E+ + ELN ++E NA + ++ + E + VP++F ++ +VL ME +
Sbjct: 186 LRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSEALYVPEVFTEHCREQVLVMERI 245
Query: 252 EGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLAT---PEGKLA 308
G+ +++ A+E+ G + L G++ Q+ +FHAD HPGN+ + PE L
Sbjct: 246 YGIPVSDIAALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSYEHPENPLW 305
Query: 309 F-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNF 367
+D G++ E + + + + NRDY +A + ++ PD V A+R
Sbjct: 306 IGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTKVDEFEFAIRTV 365
Query: 368 FDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVL 427
+ +SE++F ++ L ++ V L+ ++L +EGL P +
Sbjct: 366 LEPIFEKPLSEISFGHVLLNLFNTARRFNMQVQPQLVLLQKTLLYVEGLGRQLYPQLDLW 425
Query: 428 AASYPYFAKRLLTDPNP 444
+ PY + P
Sbjct: 426 QTAKPYLENWMYQQVGP 442
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 122/436 (27%), Positives = 214/436 (49%), Gaps = 21/436 (4%)
Query: 13 ELLARNYGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLG 72
EL+ R++ PV+L RR+L L RN +Q+ R A LR F LG
Sbjct: 23 ELIPRHWQPWPVRLFRRSLFWL--------------RNRYPEQS---RGARLRHAFEGLG 65
Query: 73 PTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSIS 132
P F+K GQ LSTR D+ PP+ EEL+ LQD +P+F A IE+ LG ++++F+
Sbjct: 66 PVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFDGQLAREQIEQALGQPIEALFADFD 125
Query: 133 PSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYVDIITT 192
P+A+AS+ QV+ A+LK + + +KV RP I+ I D L+R ++ +
Sbjct: 126 QQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLMRLCAKIVAFLIPNNRL 185
Query: 193 DVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVE 252
V +I+E+ + ELN + E NA + ++ + + + VP ++ DY VL ME +
Sbjct: 186 RPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFENSSHLYVPLVYSDYCRESVLVMERIY 245
Query: 253 GVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEG----KLA 308
G+ ++++ A+E+ G + L G++ Q+ +FHAD HPGN+ + E +
Sbjct: 246 GIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADMHPGNVFVSYEHPHDPQWI 305
Query: 309 FLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFF 368
+D G++ + + + + + NRDY +A + ++ PD V ALR
Sbjct: 306 GIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGWVPPDTKVEEFESALRTVL 365
Query: 369 DDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLA 428
+ ++E++F ++ L ++ +V L+ ++L +EGL + P +
Sbjct: 366 EPIFAKPLAEISFGQVLLNLFNTARRFNMHVQPQLVLLQKTLLYIEGLGRHLYPQLDLWQ 425
Query: 429 ASYPYFAKRLLTDPNP 444
+ P+ + P
Sbjct: 426 TAKPFLEHWMRQQIGP 441
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 192 bits (488), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 200/390 (51%), Gaps = 8/390 (2%)
Query: 55 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 114
+ R R LR +LGP FVK GQ LSTR D+ PP+ +EL++LQD +P F A +
Sbjct: 44 RQTRPRGERLRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAA 103
Query: 115 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYS---GQIVAVKVQRPGIEEAIGL 171
+ER LG L ++F P+A+AS+ QV+ A L+ G+ VAVKV RPG+ I
Sbjct: 104 IVERSLGKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDS 163
Query: 172 DFYLIRGVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKED 230
D L+R V + K + D ++ EF ++ EL+ ++E NA + ++ +A E
Sbjct: 164 DLALMRDVATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSEL 223
Query: 231 VLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYF 290
+LVP++FWD+ + +V ME + GV+++ + + G+ L G++ Q+ G+F
Sbjct: 224 LLVPEVFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFF 283
Query: 291 HADPHPGNLLAT--PE--GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYY 346
HAD HPGN+L + PE G+ LDFG++ E + + + + RDY +A +
Sbjct: 284 HADMHPGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVALLHV 343
Query: 347 ALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALI 406
+ + V + A+R + + + E++ ++ L ++ V L+
Sbjct: 344 ESGWAPEETRVEELEGAIRACCEPYFDRPLGEISLGLVLMRLFQTSRRFNVEVQPQLVLL 403
Query: 407 LRSLTVLEGLALYADPNFKVLAASYPYFAK 436
++L +EGL DP+ + + P+ +
Sbjct: 404 QKTLLNVEGLGRQLDPDLDLWKTAKPFLER 433
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 177
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 178 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 236
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 237 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 296
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 297 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 352
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 353 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 412
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 413 LEGLALYADPNFKVLAASYPYFAKRLLTD 441
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 177
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 178 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 236
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 237 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 296
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 297 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 352
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 353 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 412
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 413 LEGLALYADPNFKVLAASYPYFAKRLLTD 441
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 177
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 178 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 236
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 237 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 296
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 297 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 352
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 353 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 412
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 413 LEGLALYADPNFKVLAASYPYFAKRLLTD 441
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 177
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 178 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 236
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 237 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 296
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 297 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 352
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 353 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 412
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 413 LEGLALYADPNFKVLAASYPYFAKRLLTD 441
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 177
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 178 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 236
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 237 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 296
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 297 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 352
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 353 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 412
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 413 LEGLALYADPNFKVLAASYPYFAKRLLTD 441
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 177
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 178 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 236
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 237 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 296
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 297 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 352
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 353 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 412
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 413 LEGLALYADPNFKVLAASYPYFAKRLLTD 441
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 177
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 178 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 236
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 237 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 296
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 297 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 352
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 353 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 412
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 413 LEGLALYADPNFKVLAASYPYFAKRLLTD 441
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 177
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 178 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 236
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 237 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 296
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 297 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 352
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 353 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 412
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 413 LEGLALYADPNFKVLAASYPYFAKRLLTD 441
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/399 (28%), Positives = 199/399 (49%), Gaps = 16/399 (4%)
Query: 58 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 117
+ R LR LGP FVK GQ LSTR D+ PP+ EEL+ LQD +P F A IE
Sbjct: 47 KPRGQRLREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIE 106
Query: 118 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQI---VAVKVQRPGIEEAIGLDFY 174
R LD IF S P+A+AS+ QV+ A + + VAVKV RPG++ I D
Sbjct: 107 RAFRKKLDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLA 166
Query: 175 LIRGVGFLINKYVDIITTDVVAL-----IDEFASRVYQELNYVQEGQNARRFKKLYADKE 229
L+ ++ ++V+ ++ D L + EF + ++ EL+ ++E NA + ++ +
Sbjct: 167 LMH----MMARWVERLSADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLD 222
Query: 230 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 289
VL+P+++WD+ V+ M+ + GV +++ + G+ + L G+ Q+ G+
Sbjct: 223 LVLIPEVYWDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGF 282
Query: 290 FHADPHPGNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDY 345
FHAD HPGN++ + E G+ LDFG++ E + + + RDY+ +A +
Sbjct: 283 FHADMHPGNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRVAELH 342
Query: 346 YALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYAL 405
++ P V + A+R + + ++E++ ++ L ++ + L
Sbjct: 343 IESGWVPPSTRVDELEAAIRAVCEPYFDRPLAEISLGMVLMRLFQTSRRFQVEIQPQLVL 402
Query: 406 ILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 444
+ ++L +EGL DPN + + + P+ K +L P
Sbjct: 403 LQKTLLNIEGLGRQLDPNLDLWSTAKPFLEKWMLDQMGP 441
>sp|B3PH50|UBIB_CELJU Probable ubiquinone biosynthesis protein UbiB OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiB PE=3 SV=1
Length = 552
Score = 188 bits (477), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 201/395 (50%), Gaps = 6/395 (1%)
Query: 55 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 114
Q + R LRR LGP FVK GQ LSTRPD+ P + + EL+ LQD + F E
Sbjct: 43 QPRLSRGERLRRACEDLGPIFVKFGQLLSTRPDLVPADIVLELNHLQDNVTPFSKGEFQR 102
Query: 115 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDF- 173
+E LG ++ +F+S + P+A+AS+ QV+ A LK G+ V +KV RPGI++ I D
Sbjct: 103 IVESSLGASVAEVFASFNIEPLASASVAQVHTAVLK-DGREVVIKVIRPGIDKVIAQDIA 161
Query: 174 YLIRGVGFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLV 233
L+R ++ N +D V +++++ + ++ EL+ +E N + ++ + + + V
Sbjct: 162 LLLRVARWVENNTLDGKRLHPVEIVEDYRTTIFDELDLQREAANGSQLRRNFLNSPLLYV 221
Query: 234 PDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHAD 293
P+++W+YT VL ME + G+ + + A+ +Q + L G++ Q+ E+ +FHAD
Sbjct: 222 PEVYWEYTRTNVLVMERIYGIPVTDLAALNAQQTDMKKLAERGVEIFFTQVFEHNFFHAD 281
Query: 294 PHPGNLLATPEGKLA----FLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALD 349
HPGN+ E A +D ++ ++ + +++ M RDY +A +
Sbjct: 282 MHPGNIFVAHEHPSAPQYIAVDMAIVGSLTRADQYYLARNLLAMFRRDYRQVAELHVESG 341
Query: 350 FLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRS 409
++ V V + A+R + + E++F ++ L ++ V L+ ++
Sbjct: 342 WVPSHVRVEELEAAVRTVCEPIFEKPLKEISFAQVLLNLFRTARRFEMEVQPQLVLLQKT 401
Query: 410 LTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 444
L +EGL P+ + A ++P+ + L +P
Sbjct: 402 LLNIEGLGRQLYPDLDLWATAHPFLERWLKNRFHP 436
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 197/385 (51%), Gaps = 6/385 (1%)
Query: 55 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 114
Q K R LR LGP FVK GQ LSTR D+ P + E L +LQD +P FP +A
Sbjct: 46 QPKLSRGDRLRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARG 105
Query: 115 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFY 174
IE+ LG + +F+ SP P+A+AS+ QV+ A L +GQ V VKV RPGIE+ I D
Sbjct: 106 IIEKSLGAPVSELFAEFSPDPMASASVAQVHAATLP-NGQKVVVKVLRPGIEKVIRQDLG 164
Query: 175 LIRGVGFLINKY-VDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLV 233
L+ + L+ KY + V ++ ++ S ++ EL+ +E NA + ++ + + + +
Sbjct: 165 LMYLMAGLLEKYWSEGKRLHPVEVVADYDSTIHDELDLQREAANASQLRRNFENSPLIYI 224
Query: 234 PDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHAD 293
P I WDYT VL ME + G+ + + A+E G+ + L G++ Q+ +FHAD
Sbjct: 225 PFIDWDYTRKSVLVMERIHGIPIADVPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHAD 284
Query: 294 PHPGNL---LATP-EGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALD 349
HPGN+ ++ P + K +DFG++ + + + +++ RDY +A+ +
Sbjct: 285 MHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQVAQLHIQSG 344
Query: 350 FLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRS 409
++ P+ V A+R + + +++F + L ++ V L+ ++
Sbjct: 345 WVPPETRVNEFEAAIRTVCEPIFERPLKDISFGHFLLRLFQTARRFNMEVQPQLVLLQKT 404
Query: 410 LTVLEGLALYADPNFKVLAASYPYF 434
L +EGL P+ + + + P+
Sbjct: 405 LLNVEGLGRQLYPDLDLWSTAQPFL 429
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 211/437 (48%), Gaps = 22/437 (5%)
Query: 13 ELLARNYGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLG 72
EL+ Y P +L RR+L F LK Q R A +R F LG
Sbjct: 23 ELVPARYQPWPGRLARRSL--------FWLKK---------KQPDLSRGARIRLAFEALG 65
Query: 73 PTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSIS 132
P F+K GQ LSTR D+ PP+ EEL+ LQD +P F A IE LG ++++F
Sbjct: 66 PIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVPPFCGQAARLKIEESLGCPVETLFDDFD 125
Query: 133 PSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYV-DIIT 191
+P+A+AS+ QV+ +LK +G+ + +KV RP IE I D L++ + L+ ++V
Sbjct: 126 ETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTLARLVARFVPQSAR 185
Query: 192 TDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWV 251
+ +++E+ + ELN ++E NA + ++ + + + VP++F ++ VL ME +
Sbjct: 186 LRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSDALYVPEVFTEHCREHVLVMERI 245
Query: 252 EGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLAT---PEGKLA 308
G+ +++ A+E+ G + L G++ Q+ +FHAD HPGN+ + P+ L
Sbjct: 246 YGIPVSDIPALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSYEHPDNPLW 305
Query: 309 F-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNF 367
+D G++ E + + + + NRDY +A + ++ PD V A+R
Sbjct: 306 IGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTKVDEFEFAIRTV 365
Query: 368 FDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVL 427
+ +SE++F ++ L ++ V L+ ++L +EGL P +
Sbjct: 366 LEPIFEKPLSEISFGHVLLNLFNTARRFNMAVQPQLVLLQKTLLYVEGLGRQLYPQLDLW 425
Query: 428 AASYPYFAKRLLTDPNP 444
+ PY + P
Sbjct: 426 QTAKPYLENWMHEQVGP 442
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 206/408 (50%), Gaps = 12/408 (2%)
Query: 29 RTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDI 88
R +I+ L + ++D + L+ NK K LR+ F LGPTF+K+GQ LSTRPD+
Sbjct: 5 RLKEIVKVLAYYGFGFIVDSK---LNGNK-KSPENLRKAFEELGPTFIKIGQILSTRPDL 60
Query: 89 CPPEYLEELSELQDALP--TFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYK 146
P Y++ELS+LQ+ +P F D E + EL T+D+ F +PI +AS+ QV+
Sbjct: 61 LPLPYIKELSKLQNNVPPENFIDIE--NLFFEELSSTIDNTFLYFDKTPIGSASIAQVHD 118
Query: 147 AQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRG-VGFLINKYVDIITTDVVALIDEFASRV 205
A LK G+ V VK+QRPGI E + D +I+ + K+ D + D IDE
Sbjct: 119 AILK-DGRFVIVKIQRPGIAEMMKTDLSIIKKLLNITKTKFTDAL-IDPKEAIDELFIST 176
Query: 206 YQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQ 265
QEL+++ E N ++FKKL D + V P + K++ ME + G+K++ + ++
Sbjct: 177 TQELDFINEINNIKKFKKLNEDVKFVRTPYTIDKLCTEKIIVMEKIVGIKIDNLKKLLNE 236
Query: 266 GLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEEARFA 325
G + +L +Q+ + G+FH DPHPGNLL E + ++DFG+M + + +
Sbjct: 237 GYDLEELGKKLTLSYFKQVFQDGFFHGDPHPGNLLIR-ENHICYIDFGIMGTISKSLKIS 295
Query: 326 IIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIV 385
+ ++ + D M ++ V+ + ++ FD+ ++ S+ + ++
Sbjct: 296 LNDAILAVAYHDVNKMISVIMSIGVKKGYVNRNSLYESIEYLFDNYISVSLKNIKISVML 355
Query: 386 DGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPY 433
+ + +P ++L+S ++EG+ P ++ PY
Sbjct: 356 QEIFQISKNNNIKLPKELTMLLKSTLMIEGVIARISPELSIVDVLIPY 403
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 199/397 (50%), Gaps = 16/397 (4%)
Query: 60 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 119
R LR RLGP FVK GQ LSTR D+ PP+ +EL+ LQD +P FP A A + IER
Sbjct: 49 RGQRLREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERA 108
Query: 120 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKY-SGQI--VAVKVQRPGIEEAIGLDFYLI 176
+ +F +PIA+AS+ QV+ A ++ G++ VAVKV RP + I D L+
Sbjct: 109 FRRPVGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALM 168
Query: 177 RGVGFLINKYVDIITTDVVAL-----IDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 231
++ +V+ ++ D L + EF ++ EL+ V+E NA + ++ A E V
Sbjct: 169 A----MMAGWVEKLSPDGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELV 224
Query: 232 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 291
L+P++FWD+ +V+ ME + GV + + + + G+ + L G+ Q+ G+FH
Sbjct: 225 LIPEMFWDFCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFH 284
Query: 292 ADPHPGNLLAT--PE--GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 347
AD HPGN+ + PE G+ LDFG++ E + + + V RDY+ +A +
Sbjct: 285 ADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAELHLE 344
Query: 348 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 407
++ + + A+R + + + E++ ++ L ++ + L+
Sbjct: 345 SGWVPEGTRIDELEGAIRTVCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQ 404
Query: 408 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 444
++L +EGL DP + + P+ K ++ P
Sbjct: 405 KTLLNIEGLGRQLDPELDLWHTAKPFLEKWMVDQIGP 441
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 182 bits (461), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 199/397 (50%), Gaps = 16/397 (4%)
Query: 60 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 119
R LR LGP FVK GQ LSTR D+ PP+ +EL+ LQD +P F A + IER
Sbjct: 49 RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERA 108
Query: 120 LGLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLI 176
+ +F S P+A+AS+ QV+ A ++ + VAVKV RPG+ I D L+
Sbjct: 109 FRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALM 168
Query: 177 RGVGFLINKYVDIITTDVVAL-----IDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 231
R ++ +V+ ++ D L + EF + ++ EL+ V+E NA + ++ + V
Sbjct: 169 R----MMAGWVESLSADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLV 224
Query: 232 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 291
L+P++FWD+ +VL ME ++GV +N+ + S G+ + L G+ Q+ G+FH
Sbjct: 225 LIPEVFWDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFH 284
Query: 292 ADPHPGNLLAT--PE--GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 347
AD HPGN+ + PE G+ LDFG++ E + + + RDY+ +A +
Sbjct: 285 ADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIE 344
Query: 348 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 407
++ V + A+R + + + E++ ++ L ++ + L+
Sbjct: 345 SGWVPAHTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQ 404
Query: 408 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 444
++L +EGL DP+ + + + P+ K +L P
Sbjct: 405 KTLLNIEGLGRQLDPDLDLWSTAKPFLEKWMLDQLGP 441
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 182 bits (461), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 199/397 (50%), Gaps = 16/397 (4%)
Query: 60 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 119
R LR LGP FVK GQ LSTR D+ PP+ +EL+ LQD +P F A + IER
Sbjct: 49 RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERA 108
Query: 120 LGLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLI 176
+ +F S P+A+AS+ QV+ A ++ + VAVKV RPG+ I D L+
Sbjct: 109 FRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALM 168
Query: 177 RGVGFLINKYVDIITTDVVAL-----IDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 231
R ++ +V+ ++ D L + EF + ++ EL+ V+E NA + ++ + V
Sbjct: 169 R----MMAGWVESLSADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLV 224
Query: 232 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 291
L+P++FWD+ +VL ME ++GV +N+ + S G+ + L G+ Q+ G+FH
Sbjct: 225 LIPEVFWDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFH 284
Query: 292 ADPHPGNLLAT--PE--GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 347
AD HPGN+ + PE G+ LDFG++ E + + + RDY+ +A +
Sbjct: 285 ADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIE 344
Query: 348 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 407
++ V + A+R + + + E++ ++ L ++ + L+
Sbjct: 345 SGWVPAHTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQ 404
Query: 408 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 444
++L +EGL DP+ + + + P+ K +L P
Sbjct: 405 KTLLNIEGLGRQLDPDLDLWSTAKPFLEKWMLDQLGP 441
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 181 bits (460), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 194/386 (50%), Gaps = 14/386 (3%)
Query: 60 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 119
R A LR LGP F+K GQ LSTR D+ PP+ +EL+ LQD +P FP+ +A + IER+
Sbjct: 55 RGARLRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQ 114
Query: 120 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGV 179
LG + +F+ P+A+AS+ QV+ AQLK SG+ V VKV RPG++ I D +
Sbjct: 115 LGAPVSQLFARFDSQPLASASVAQVHAAQLK-SGEEVVVKVVRPGLKPVIRQDLAWL--- 170
Query: 180 GFLINKYVDIITTDV-----VALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVP 234
FL+ + + + D V ++ ++ ++ EL+ ++E NA + ++ + + VP
Sbjct: 171 -FLLARIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVP 229
Query: 235 DIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADP 294
++WD +VL ME + GV + + + Q + L G++ Q+ +FHAD
Sbjct: 230 QVYWDLCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADM 289
Query: 295 HPGNLLATPEGKLA----FLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDF 350
HPGN+ + + +D G++ +E + + +++ RDY +A+ + +
Sbjct: 290 HPGNIFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGW 349
Query: 351 LSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSL 410
+ D V A+R + + +++F ++ L ++ V L+ ++L
Sbjct: 350 VPADTKVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTL 409
Query: 411 TVLEGLALYADPNFKVLAASYPYFAK 436
+EGL P+ + + + P+ +
Sbjct: 410 LNIEGLGRQLYPDLDLWSTAQPFLER 435
>sp|B1KR05|UBIB_SHEWM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=ubiB PE=3 SV=1
Length = 549
Score = 181 bits (460), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 200/397 (50%), Gaps = 6/397 (1%)
Query: 54 DQNKRKRAAE-LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEA 112
+Q+K K E L+ + LGP ++K GQ LSTR D+ E+ EEL+ LQD +P F + A
Sbjct: 46 NQHKDKVGGERLKLVMQELGPVYIKFGQMLSTRRDLLDDEWAEELAMLQDRVPPFDSSIA 105
Query: 113 FSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLD 172
IE ELG ++D+ F +P+A+AS+ QV+ A LK +G+ V +KV RP +E + D
Sbjct: 106 REMIELELGTSIDTYFDDFDNTPLASASISQVHTATLKSNGKAVVLKVLRPNVEAQVDAD 165
Query: 173 FYLI-RGVGFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 231
+L+ + FL +++++ + + ELN E NA + + + D +
Sbjct: 166 LHLMSQAANFLETVLGHGNRLRPAEVVEDYRTTIEGELNLKLEALNAVKLRNNFLDSGSL 225
Query: 232 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 291
+P ++ + +++ ME +EG+ +++ A+++QG + L G++ Q+ +FH
Sbjct: 226 YIPYMYEELCFTRLIVMERIEGIPVSDMAALKAQGTNLKVLAERGVELFFTQVFRDNFFH 285
Query: 292 ADPHPGNLLAT---PEGKLAF-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 347
AD HPGN+ + PE LD G+M EE + + + + NRDY +A+ Y
Sbjct: 286 ADMHPGNIFVSREHPEDPYYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYHRIAQLYIE 345
Query: 348 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 407
++SPD D+ A++ + N + E++F ++ L ++ V L+
Sbjct: 346 SGWVSPDTDIAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLE 405
Query: 408 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 444
++L +EGL P + + P+ K + P
Sbjct: 406 KTLLYIEGLGRQLYPQLDLWQTAKPFLEKWMSEQVGP 442
>sp|A1SAK0|UBIB_SHEAM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3
SV=1
Length = 549
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 202/399 (50%), Gaps = 6/399 (1%)
Query: 52 VLDQNKRKRAAE-LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDA 110
V +++K K E L+ LGP ++K GQ LSTR D+ E+ +ELS LQD +P F A
Sbjct: 44 VRNRHKDKCGGERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAQELSMLQDRVPAFDSA 103
Query: 111 EAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIG 170
A IE EL +DS+F +P+A+AS+ QV+ A LK +GQ V +KV RP +E I
Sbjct: 104 LAREAIEAELKAPIDSLFDDFDDTPLASASISQVHTATLKSNGQQVVLKVLRPNVEANIK 163
Query: 171 LDFYLIRGVGFLINKYV-DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 229
D L+ V +N+ + + V +++++ + + ELN E NA + + + D +
Sbjct: 164 ADLELMLQVATWVNRLLGEGNRLRPVEVVEDYQNTILGELNLKLEALNATKLRNNFLDSD 223
Query: 230 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 289
+ +P ++ + +++ ME ++G+ +++ A+ +QG + L G++ Q+ +
Sbjct: 224 ALYIPYVYEELCHPRLMVMERIDGIPVSDIEALNAQGTNLKLLAERGVELFFTQVFRDNF 283
Query: 290 FHADPHPGNLLAT---PEGKLAF-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDY 345
FHAD HPGN+ + PE LD G+M EE + + + + NRDY +A+ Y
Sbjct: 284 FHADMHPGNIFISREHPENPFYIGLDCGIMGSLNEEDKRYLAENFLAFFNRDYHRIAQLY 343
Query: 346 YALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYAL 405
++S D D+ A++ + N ++E++F ++ L ++ V L
Sbjct: 344 VESGWVSADTDILAFEQAVKLVCEPMFNKPLNEISFGHVLLELFRTARRFDIVVQPQLVL 403
Query: 406 ILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 444
+ ++L +EGL P + + P+ + + P
Sbjct: 404 LEKTLLYIEGLGRQLYPQLDLWQTAKPFLERWMAEQVGP 442
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/405 (28%), Positives = 198/405 (48%), Gaps = 14/405 (3%)
Query: 41 SLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSEL 100
SL+LL+ R + R A LR LGP F+K GQ LSTR D+ PP+ +EL L
Sbjct: 37 SLRLLMPWRWLPRKPTELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLL 96
Query: 101 QDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKV 160
QD +P F +A + IE +LG + +FS P+A+AS+ QV+ A+LK +G+ V VKV
Sbjct: 97 QDRVPPFDPKKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKV 155
Query: 161 QRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDV-----VALIDEFASRVYQELNYVQEG 215
RPG++ I D + FLI K + + D V ++ ++ +Y EL+ ++E
Sbjct: 156 VRPGLKPVIAQDLAWL----FLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREA 211
Query: 216 QNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNT 275
NA + ++ + D E + VP ++WD KVL ME + GV + + + Q + L
Sbjct: 212 ANASQLRRNFEDSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAER 271
Query: 276 GIQCSLRQLLEYGYFHADPHPGNLLATP----EGKLAFLDFGMMSETPEEARFAIIGHVV 331
G++ Q+ +FHAD HPGN+ + + +D G++ E + + ++
Sbjct: 272 GVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLF 331
Query: 332 HMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAV 391
RDY +A+ + ++ + V A+R + + +++F ++ L
Sbjct: 332 AFFKRDYRRVAQLHIDSGWVPANTKVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQT 391
Query: 392 LYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAK 436
++ V L+ ++L +EGL P+ + + + PY +
Sbjct: 392 ARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPYLER 436
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 179 bits (453), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 196/393 (49%), Gaps = 17/393 (4%)
Query: 58 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 117
+ R A LR LGP FVK GQ LSTR D+ PP+ EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 118 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 173
R LGL + F++ +P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADI 168
Query: 174 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 229
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 230 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 289
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 290 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 343
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 344 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 403
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAEVLIKLFRVAQRYELTLQPQL 405
Query: 404 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 436
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVLER 438
>sp|Q4V052|UBIB_XANC8 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ubiB PE=3
SV=1
Length = 557
Score = 179 bits (453), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 196/393 (49%), Gaps = 17/393 (4%)
Query: 58 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 117
+ R A LR LGP FVK GQ LSTR D+ PP+ EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 118 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 173
R LGL + F++ +P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADI 168
Query: 174 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 229
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 230 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 289
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 290 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 343
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 344 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 403
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAEVLIKLFRVAQRYELTLQPQL 405
Query: 404 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 436
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVLER 438
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 183/369 (49%), Gaps = 25/369 (6%)
Query: 64 LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLT 123
L +I LGP ++KLGQ LSTRPD+ PP Y+ L+ LQ +P P + ++RE
Sbjct: 46 LTKILVELGPFYIKLGQLLSTRPDLLPPRYINALTALQSNVPPLPWSAIEDLLQREFPQP 105
Query: 124 LDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLI 183
L F I PIAA S+GQ+++A L+ SG+ VA+KV+RPGI+ + D LI+ V L+
Sbjct: 106 LGETFQEIESEPIAAGSIGQIHRAVLQ-SGETVAIKVKRPGIDVIVEQDSLLIKDVAELL 164
Query: 184 NKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRF-----KKLYADKEDVLVPDIFW 238
D+V L DEF V ELN+ E K + D +++P ++W
Sbjct: 165 ALTEFGQNYDIVKLADEFTQTVKAELNFDTEAAYTNNLRTNLAKTTWFDPNQLVIPKVYW 224
Query: 239 DYTSGKVLTMEWVEGV-----KLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHAD 293
+ T+ K L +EW++GV L + + + K ++ + +QL G+FHAD
Sbjct: 225 ELTNQKFLVLEWLDGVPILTADLTQPPSDKDIAEKKKEITTLLFRAFFQQLYVDGFFHAD 284
Query: 294 PHPGNLLATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYAL----- 348
PHPGN+ +G+LA +D GM+ R + ++ +V+ D + A+ L
Sbjct: 285 PHPGNIFYLADGRLALIDCGMVGRLDPRTRQLLTEMLLAIVDLDAKRCAQLTVELSESVG 344
Query: 349 --DFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALI 406
+F +VD + LR ++D S+SE NF +V + VPA L
Sbjct: 345 RVNFQRLEVDYERM---LRKYYD----LSLSEFNFSEVVYEFLRIARVNKLKVPACLGLY 397
Query: 407 LRSLTVLEG 415
+ L LEG
Sbjct: 398 AKCLANLEG 406
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 195/393 (49%), Gaps = 17/393 (4%)
Query: 58 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 117
+ R A LR LGP FVK GQ LSTR D+ PP+ EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 118 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 173
R LGL + F++ +P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADI 168
Query: 174 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 229
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 230 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 289
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 290 FHADPHPGNLL--ATPEG----KLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 343
FHAD H GN+ + PE + LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERCLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 344 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 403
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAEVLIKLFRVAQRYELTLQPQL 405
Query: 404 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 436
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVLER 438
>sp|B0TJ18|UBIB_SHEHH Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
halifaxensis (strain HAW-EB4) GN=ubiB PE=3 SV=1
Length = 549
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/405 (28%), Positives = 203/405 (50%), Gaps = 6/405 (1%)
Query: 54 DQNKRKRAAE-LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEA 112
+Q+K K E L+ LGP ++K GQ LSTR D+ E+ EEL+ LQD +P F A A
Sbjct: 46 NQHKDKVGGERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIA 105
Query: 113 FSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLD 172
+ IE EL ++S F+ P+A+AS+ QV+ A LK +G V +K+ RP +E+ + D
Sbjct: 106 RASIETELNAPIESYFNDFDDIPLASASISQVHTATLKSNGAAVVLKILRPDVEQKVHAD 165
Query: 173 FYLI-RGVGFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 231
L+ + FL +++++ + + ELN E NA + + + D +
Sbjct: 166 LLLMSQAADFLETLLGTNNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFIDSNAL 225
Query: 232 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 291
+P ++ + +++ ME ++G+ ++++VA+E+QG + L G++ Q+ +FH
Sbjct: 226 YIPYMYEELCFTRLIVMERIDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDNFFH 285
Query: 292 ADPHPGNLLAT---PEGKLAF-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 347
AD HPGN+ + P L LD G+M EE + + + + NRDY +A+ Y
Sbjct: 286 ADMHPGNIFVSREHPNDPLYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYRRIAQLYIE 345
Query: 348 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 407
++SPD DV A++ + N + E++F ++ L ++ V L+
Sbjct: 346 SGWVSPDTDVAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLE 405
Query: 408 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALVE 452
++L +EGL P + + P+ + + P + A V+
Sbjct: 406 KTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGPKVMAAKVK 450
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/384 (27%), Positives = 194/384 (50%), Gaps = 8/384 (2%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
LR LGP FVK GQ LSTR D+ P+ EL++LQD +P F A A + IE+ L
Sbjct: 49 GVRLRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSL 108
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 177
G +D+IF P+A+AS+ QV+ A LK ++G+ VAVKV RP + I D L+R
Sbjct: 109 GAPVDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLR 168
Query: 178 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 236
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIAVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 237 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 296
+W+Y + VL ME + GV +++ + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 YWEYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 297 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 352
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 353 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 412
V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 ATTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 413 LEGLALYADPNFKVLAASYPYFAK 436
+EGL DP + + PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 197/405 (48%), Gaps = 14/405 (3%)
Query: 41 SLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSEL 100
SL+LL+ R ++ R A LR LGP F+K GQ LSTR D+ P + +EL L
Sbjct: 36 SLRLLMPWRWLPRTPSELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLL 95
Query: 101 QDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKV 160
QD +P F +A + IE +LG + +FS P+A+AS+ QV+ A+LK +G+ V VKV
Sbjct: 96 QDRVPPFDPKQAVALIESQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKV 154
Query: 161 QRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDV-----VALIDEFASRVYQELNYVQEG 215
RPG++ I D + FLI K + + D V ++ ++ +Y EL+ ++E
Sbjct: 155 VRPGLKPVIAQDLAWL----FLIAKGAERASADARRLHPVEIVGDYEKTIYDELDLLREA 210
Query: 216 QNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNT 275
NA + ++ + E + VP ++WD KVL ME + GV + + + Q + L
Sbjct: 211 ANASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAER 270
Query: 276 GIQCSLRQLLEYGYFHADPHPGNLLATP----EGKLAFLDFGMMSETPEEARFAIIGHVV 331
G++ Q+ + +FHAD HPGN+ + + +D G++ E + + +++
Sbjct: 271 GVEVFFTQVFRHSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLI 330
Query: 332 HMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAV 391
RDY +A + ++ V A+R + + +++F ++ L
Sbjct: 331 AFFKRDYRRVAELHIDSGWVPAHTKVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQT 390
Query: 392 LYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAK 436
++ V L+ ++L +EGL P+ + + + P+ +
Sbjct: 391 ARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPFLER 435
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 115/410 (28%), Positives = 200/410 (48%), Gaps = 15/410 (3%)
Query: 41 SLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSEL 100
SL+LL+ R + R A LR LGP F+K GQ LSTR D+ P + +EL L
Sbjct: 37 SLRLLMPWRWLPRKPTELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLL 96
Query: 101 QDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKV 160
QD +P F +A + IE +LG + +FS P+A+AS+ QV+ A+LK +G+ V VKV
Sbjct: 97 QDRVPPFDPQKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKV 155
Query: 161 QRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDV-----VALIDEFASRVYQELNYVQEG 215
RPG++ I D + FLI K + + D V ++ ++ +Y EL+ ++E
Sbjct: 156 VRPGLKPVIAQDLAWL----FLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREA 211
Query: 216 QNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNT 275
NA + ++ + E + VP ++WD KVL ME + GV + + V + Q + L
Sbjct: 212 ANASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMVTLADQRTDMKLLAER 271
Query: 276 GIQCSLRQLLEYGYFHADPHPGNLLATP----EGKLAFLDFGMMSETPEEARFAIIGHVV 331
G++ Q+ +FHAD HPGN+ + + +D G++ E + + +++
Sbjct: 272 GVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLI 331
Query: 332 HMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAV 391
RDY +A+ + ++ V A+R + + +++F ++ L
Sbjct: 332 AFFKRDYRRVAQLHIDSGWVPAHTKVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQT 391
Query: 392 LYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD 441
++ V L+ ++L +EGL P+ + + + P F +R + D
Sbjct: 392 ARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKP-FLERWMRD 440
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 203/400 (50%), Gaps = 16/400 (4%)
Query: 55 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 114
++++ RA LR LGP F+K GQ LSTR D+ P + +EL+ LQD +P F ++ +
Sbjct: 51 RSEQPRAVRLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVA 110
Query: 115 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFY 174
IE +LG +D F+ P+A+AS+ QV+ AQLK +G+ V VKV RPG++ I D
Sbjct: 111 LIEEQLGARVDEAFARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDLA 169
Query: 175 LIRGVGFLINKYVDIITTD-----VVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 229
+ +L + + +T+ +V ++ ++ +Y EL+ ++E NA + K+ +
Sbjct: 170 WL----YLFARLAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSP 225
Query: 230 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 289
+ VP I+WD+ KVL ME + GV + + A+ QG + L G++ Q+ +
Sbjct: 226 LLYVPQIYWDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSF 285
Query: 290 FHADPHPGNLLATP----EGKLAFLDFGMM-SETPEEARFAIIGHVVHMVNRDYEAMARD 344
FHAD HPGN+ + + + +D G++ S TP++ + + +++ RDY +A+
Sbjct: 286 FHADMHPGNIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDY-LARNLLAFFKRDYRKVAQL 344
Query: 345 YYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYA 404
+ ++ D V A+R + + +++F ++ L ++ V
Sbjct: 345 HIDSGWVPADTQVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLV 404
Query: 405 LILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 444
L+ ++L +EGL P + + P+ + + +P
Sbjct: 405 LLQKTLLNIEGLGRQLYPELDLWTTAKPFLERWMRKRMSP 444
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 194/384 (50%), Gaps = 8/384 (2%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
LR LGP FVK GQ LSTR D+ P + EL++LQD +P F A A +E+ L
Sbjct: 49 GVRLRLALESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSL 108
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 177
G +D +F P+A+AS+ QV+ A +K ++G+ VAVKV RP + I D L+R
Sbjct: 109 GAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLR 168
Query: 178 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 236
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIAVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 237 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 296
+W++ + VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 YWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 297 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 352
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 353 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 412
P V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PTTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 413 LEGLALYADPNFKVLAASYPYFAK 436
+EGL DP + + PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|Q5H616|UBIB_XANOR Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain KACC10331 / KXO85) GN=ubiB PE=3 SV=1
Length = 557
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 202/408 (49%), Gaps = 21/408 (5%)
Query: 58 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 117
+ R A LR LGP FVK GQ LSTR D+ P + EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 118 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 173
R LGL + F+S P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADI 168
Query: 174 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 229
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 230 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 289
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 290 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 343
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 344 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 403
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQL 405
Query: 404 ALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD---PNPYLRD 448
L+ ++L +EG+ DP + A + P +R+L + P LR+
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVL-ERILRERYSPRRVLRE 452
>sp|B2ST34|UBIB_XANOP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain PXO99A) GN=ubiB PE=3 SV=1
Length = 557
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 202/408 (49%), Gaps = 21/408 (5%)
Query: 58 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 117
+ R A LR LGP FVK GQ LSTR D+ P + EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 118 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 173
R LGL + F+S P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADI 168
Query: 174 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 229
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 230 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 289
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 290 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 343
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 344 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 403
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQL 405
Query: 404 ALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD---PNPYLRD 448
L+ ++L +EG+ DP + A + P +R+L + P LR+
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVL-ERILRERYSPRRVLRE 452
>sp|Q2P8Q0|UBIB_XANOM Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain MAFF 311018) GN=ubiB PE=3 SV=1
Length = 557
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 202/408 (49%), Gaps = 21/408 (5%)
Query: 58 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 117
+ R A LR LGP FVK GQ LSTR D+ P + EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 118 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 173
R LGL + F+S P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADI 168
Query: 174 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 229
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 230 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 289
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 290 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 343
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 344 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 403
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQL 405
Query: 404 ALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD---PNPYLRD 448
L+ ++L +EG+ DP + A + P +R+L + P LR+
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVL-ERILRERYSPRRVLRE 452
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 194/384 (50%), Gaps = 8/384 (2%)
Query: 61 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 120
LR LGP FVK GQ LSTR D+ P + +EL++LQD +P F A A +E L
Sbjct: 49 GVRLRLALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENAL 108
Query: 121 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 177
G +D +F P+A+AS+ QV+ A +K ++G+ VAVKV RP + I D L+R
Sbjct: 109 GAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLR 168
Query: 178 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 236
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIAVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 237 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 296
+W++ + VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 YWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 297 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 352
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 353 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 412
P V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PTTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 413 LEGLALYADPNFKVLAASYPYFAK 436
+EGL DP + + PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLER 432
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 193/393 (49%), Gaps = 8/393 (2%)
Query: 60 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 119
R LR RLGP FVK GQ LSTR D+ PP+ EL+ LQD +P F A + IER
Sbjct: 49 RGQRLREALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERA 108
Query: 120 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQI---VAVKVQRPGIEEAIGLDFYLI 176
+ +F S P+A+AS+ QV+ A ++ + VAVKV RPG+ I D L+
Sbjct: 109 FRRPVGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLM 168
Query: 177 RGV-GFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPD 235
R + G++ + D ++ EF + ++ EL+ ++E NA + ++ V +P+
Sbjct: 169 RAMAGWVESLSADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPE 228
Query: 236 IFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPH 295
I WD+ +VL ME ++GV +++ + + G+ + L G+ Q+ G+FHAD H
Sbjct: 229 ILWDFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMH 288
Query: 296 PGNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFL 351
PGN+ + E G+ LDFG++ E + + + RDY+ +A + ++
Sbjct: 289 PGNIQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAELHVESGWV 348
Query: 352 SPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLT 411
D + + A+R + + + E++ ++ L ++ + L+ ++L
Sbjct: 349 PADTRINELESAIRAVCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLL 408
Query: 412 VLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 444
+EGL DP + + + P+ K +L P
Sbjct: 409 NIEGLGRQLDPELDLWSTAKPFLEKWMLDQMGP 441
>sp|Q8PQT0|UBIB_XANAC Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=ubiB PE=3 SV=1
Length = 557
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 202/408 (49%), Gaps = 21/408 (5%)
Query: 58 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 117
+ R A LR LGP FVK GQ LSTR D+ P + EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGQAARLIVE 108
Query: 118 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 173
LGL + F+S P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 AALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADI 168
Query: 174 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 229
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLAAELDLQREGANASVLRRFWEGSD 225
Query: 230 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 289
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 290 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 343
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 344 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 403
+ ++ +V + + A R+ + N +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFNRPLSEISLAQVLIKLFRVAQRYELTLQPQL 405
Query: 404 ALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD---PNPYLRD 448
L+ ++L +EG+ DP + A + P +R+L + P LR+
Sbjct: 406 ILLQKTLLNIEGVGRQLDPRLDIWAVARPVL-ERILRERYSPRRVLRE 452
>sp|Q12S25|UBIB_SHEDO Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
GN=ubiB PE=3 SV=1
Length = 549
Score = 173 bits (438), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 201/399 (50%), Gaps = 6/399 (1%)
Query: 52 VLDQNKRKRAAE-LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDA 110
+ +Q+K K AAE L+ LGP ++KLGQ LSTR D+ E+ +L+ LQD +P F A
Sbjct: 44 IRNQHKDKSAAERLKLAMQELGPVYIKLGQMLSTRRDLLDDEWAYQLAMLQDRVPPFDSA 103
Query: 111 EAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIG 170
A IE EL ++DS+F P+A+AS+ QV+ A LK +G+ V +KV RP +E I
Sbjct: 104 LAREAIETELNASIDSLFDDFDDVPLASASIAQVHSATLKSNGKAVVLKVLRPNVEALIL 163
Query: 171 LDFYLIRGVGFLINKYV-DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 229
D L+ L+ + + D +I+++ + ELN E NA + + + D +
Sbjct: 164 ADLQLMSHCAALLERILGDGNRLRPAEVIEDYRLTILGELNLKLEALNAIKLRNNFLDSD 223
Query: 230 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 289
+ VP I+ D + +++ ME + G+ +++ A+++QG + L G++ Q+ +
Sbjct: 224 ALYVPYIYEDLSFTRLIVMERIYGIAVSDLSALKAQGTNLKLLAERGVELFFTQVFRDNF 283
Query: 290 FHADPHPGNLLAT---PEGKLAF-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDY 345
FHAD HPGN+ + P+ LD G+M + + + + + NRDY+ +A+ +
Sbjct: 284 FHADMHPGNIFISRDHPDNPYYIGLDCGIMGTLTDVDKRYLAENFLAFFNRDYQRIAQLH 343
Query: 346 YALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYAL 405
++S D+ A++ + N ++E++F ++ L Q+ V L
Sbjct: 344 LESGWVSEHTDIVAFEQAIKIVCEPMFNKPLAEISFGHVLLALFRTARQFNMVVQPQLVL 403
Query: 406 ILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 444
+ ++L +EGL P + + P+ + + P
Sbjct: 404 LQKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAKQVGP 442
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,762,873
Number of Sequences: 539616
Number of extensions: 7551430
Number of successful extensions: 21377
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 20601
Number of HSP's gapped (non-prelim): 363
length of query: 464
length of database: 191,569,459
effective HSP length: 121
effective length of query: 343
effective length of database: 126,275,923
effective search space: 43312641589
effective search space used: 43312641589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)