Query 012423
Match_columns 464
No_of_seqs 258 out of 1136
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 09:09:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwd_A ADP-ribosylation factor 100.0 3.7E-42 1.3E-46 311.5 11.1 120 3-122 25-145 (147)
2 3sub_A ADP-ribosylation factor 100.0 3.3E-39 1.1E-43 296.2 11.1 126 2-128 7-133 (163)
3 2owa_A Arfgap-like finger doma 100.0 3E-39 1E-43 290.3 9.6 113 4-116 24-137 (138)
4 2crw_A ARF GAP 3, ADP-ribosyla 100.0 7.2E-39 2.4E-43 291.1 10.2 113 3-116 16-129 (149)
5 2p57_A GTPase-activating prote 100.0 2.3E-38 7.9E-43 286.2 9.8 113 3-116 24-137 (144)
6 2olm_A Nucleoporin-like protei 100.0 1.6E-35 5.6E-40 266.6 11.7 120 3-126 12-131 (140)
7 2iqj_A Stromal membrane-associ 100.0 1.7E-35 5.9E-40 264.7 9.9 115 4-124 15-129 (134)
8 2crr_A Stromal membrane-associ 100.0 2.1E-35 7E-40 266.2 10.2 116 3-124 16-131 (141)
9 3o47_A ADP-ribosylation factor 100.0 5.7E-33 1.9E-37 274.9 11.5 121 3-123 24-145 (329)
10 3jue_A Arfgap with coiled-coil 100.0 2.5E-30 8.7E-35 260.8 11.4 119 4-124 33-151 (368)
11 3lju_X ARF-GAP with dual PH do 100.0 3.2E-30 1.1E-34 263.0 11.6 118 3-124 21-138 (386)
12 2b0o_E UPLC1; arfgap, structur 99.9 1.1E-27 3.9E-32 232.5 12.5 119 3-123 29-147 (301)
13 1dcq_A PYK2-associated protein 99.9 1E-27 3.4E-32 230.1 10.5 119 3-123 4-122 (278)
14 3lvq_E ARF-GAP with SH3 domain 99.9 2.6E-27 8.8E-32 243.6 9.3 119 3-123 10-128 (497)
15 1u5k_A Hypothetical protein; O 83.8 0.67 2.3E-05 43.7 3.4 49 13-77 147-195 (244)
16 2vut_I AREA, nitrogen regulato 81.4 0.9 3.1E-05 33.1 2.6 36 17-52 2-38 (43)
17 1gnf_A Transcription factor GA 80.0 1.1 3.8E-05 33.1 2.7 38 15-52 3-41 (46)
18 3dfx_A Trans-acting T-cell-spe 76.8 1.2 4.2E-05 35.0 2.2 40 13-52 4-44 (63)
19 4gat_A Nitrogen regulatory pro 73.9 2.3 7.8E-05 33.7 3.1 39 14-52 7-46 (66)
20 1ffk_W Ribosomal protein L37AE 70.0 3.1 0.0001 33.6 3.1 41 3-45 13-54 (73)
21 4hc9_A Trans-acting T-cell-spe 59.7 4.4 0.00015 35.0 2.3 37 16-52 5-42 (115)
22 3k7a_M Transcription initiatio 54.1 4.8 0.00017 40.1 1.9 47 1-47 1-53 (345)
23 2kae_A GATA-type transcription 51.6 3.8 0.00013 32.9 0.5 37 15-52 7-46 (71)
24 1vq8_Z 50S ribosomal protein L 48.2 6.2 0.00021 32.4 1.3 41 3-45 13-54 (83)
25 3cc2_Z 50S ribosomal protein L 46.3 4.6 0.00016 35.3 0.2 40 3-44 46-86 (116)
26 3g9m_A Glucocorticoid receptor 46.2 11 0.00037 31.0 2.5 30 15-47 1-30 (90)
27 4hc9_A Trans-acting T-cell-spe 44.8 15 0.00051 31.7 3.2 39 14-52 57-96 (115)
28 1hcq_A Protein (estrogen recep 41.2 16 0.00056 29.7 2.8 31 14-47 2-32 (84)
29 1tjl_A DNAK suppressor protein 40.1 8.9 0.00031 34.5 1.1 34 14-47 109-143 (151)
30 2a66_A Orphan nuclear receptor 39.4 13 0.00044 32.0 2.0 33 12-47 5-37 (113)
31 1r4i_A Androgen receptor; AR, 38.8 15 0.00051 31.2 2.3 32 13-47 4-35 (105)
32 3j21_i 50S ribosomal protein L 38.2 14 0.00048 30.5 1.9 40 3-44 21-61 (83)
33 1d4u_A Nucleotide excision rep 36.8 8.7 0.0003 33.2 0.5 31 15-45 4-35 (111)
34 3izc_m 60S ribosomal protein R 36.7 18 0.00062 30.4 2.4 39 3-43 22-61 (92)
35 2han_B Ecdysone receptor; tran 36.6 21 0.00072 30.9 2.9 30 15-47 7-36 (119)
36 2ebl_A COUP transcription fact 36.3 17 0.00057 30.0 2.1 31 14-47 5-35 (89)
37 2kgo_A Uncharacterized protein 35.8 4.7 0.00016 34.8 -1.3 33 15-47 55-88 (108)
38 2han_A Protein ultraspiracle; 35.0 21 0.0007 29.6 2.5 30 15-47 9-38 (93)
39 1dl6_A Transcription factor II 33.9 18 0.00062 27.4 1.8 28 17-45 12-39 (58)
40 2nll_B Protein (thyroid hormon 33.5 16 0.00056 30.8 1.7 28 17-47 2-29 (103)
41 1cit_A NGFI-B, protein (orphan 32.1 27 0.00092 28.7 2.7 27 18-47 2-28 (89)
42 3iz5_m 60S ribosomal protein L 32.0 19 0.00066 30.2 1.8 40 3-44 22-62 (92)
43 1dsz_A RAR-alpha, retinoic aci 29.2 22 0.00076 29.0 1.7 28 17-47 5-32 (86)
44 3jyw_9 60S ribosomal protein L 28.6 12 0.00041 30.1 0.0 38 4-43 13-51 (72)
45 1ynw_B Retinoic acid receptor 28.4 19 0.00066 30.2 1.3 29 16-47 3-31 (99)
46 4bbr_M Transcription initiatio 28.0 27 0.00094 34.9 2.5 28 18-45 23-51 (345)
47 1a6y_A Orphan nuclear receptor 27.8 28 0.00096 28.9 2.1 29 16-47 7-35 (94)
48 1lo1_A Steroid hormone recepto 27.7 18 0.00061 30.3 0.9 29 16-47 4-32 (98)
49 3dzy_D Peroxisome proliferator 27.5 26 0.00088 35.8 2.2 30 15-47 49-78 (419)
50 1kb2_A Vitamin D3 receptor; VD 27.0 23 0.00079 30.2 1.5 30 15-47 5-34 (110)
51 3iz6_N 40S ribosomal protein S 26.0 26 0.00089 26.9 1.4 39 14-57 16-54 (56)
52 4a17_Y RPL37A, 60S ribosomal p 24.8 18 0.00061 31.0 0.4 40 3-44 22-62 (103)
53 3j21_g 50S ribosomal protein L 24.3 16 0.00054 27.6 -0.0 25 15-45 13-37 (51)
54 1dsz_B RXR-alpha, retinoic aci 22.9 22 0.00074 29.0 0.5 30 15-47 4-33 (85)
55 4hn5_A Glucocorticoid receptor 21.9 44 0.0015 28.9 2.3 32 13-47 26-57 (117)
56 3cbb_A HNF-4-alpha, hepatocyte 21.6 33 0.0011 27.5 1.3 27 18-47 2-28 (78)
No 1
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.7e-42 Score=311.54 Aligned_cols=120 Identities=48% Similarity=0.994 Sum_probs=108.1
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 012423 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (464)
Q Consensus 3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~ 82 (464)
++++|++|++.|+|++||||++++|+|||++||||||++|+||||.||+||||||||+||.|+++||++|+.+||.++|+
T Consensus 25 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~ 104 (147)
T 3dwd_A 25 TRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFRE 104 (147)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCC-CCCCCCcccccCChhHHHHHHHHHHHHcCCCCCC
Q 012423 83 FLSQYG-IPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRD 122 (464)
Q Consensus 83 f~ea~~-~~~e~~I~~KY~s~aa~~YrekL~a~~eGr~w~~ 122 (464)
||++++ +....+|++||++++|.+||++|++++|||+|+.
T Consensus 105 ~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 105 FLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 999875 4557899999999999999999999999999984
No 2
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.3e-39 Score=296.24 Aligned_cols=126 Identities=40% Similarity=0.743 Sum_probs=114.8
Q ss_pred hHHHHHHHHhcC-CCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHH
Q 012423 2 AATRRLRDLQSQ-PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERL 80 (464)
Q Consensus 2 aa~r~L~~L~~~-pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~a 80 (464)
++.++|++|++. |+|++||||++++|+|||++||||||++|+|+||.||+||||||||+||.|+++||++|+.+||.++
T Consensus 7 ~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~a 86 (163)
T 3sub_A 7 AAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKC 86 (163)
T ss_dssp HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHH
Confidence 478899999875 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCcccccCChhHHHHHHHHHHHHcCCCCCCCchhhh
Q 012423 81 NTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKE 128 (464)
Q Consensus 81 n~f~ea~~~~~e~~I~~KY~s~aa~~YrekL~a~~eGr~w~~pP~~~E 128 (464)
++||++++... ..+..||.+++|..||++|+++++|++..+|+++.|
T Consensus 87 n~~~e~~g~~~-~~p~~KY~s~aA~~Yr~~L~~~v~~~~~p~~~~~~~ 133 (163)
T 3sub_A 87 QTYLENYGISD-FIPERKYRTKAADHYRKILRSIVHNVDPPAPLPLDE 133 (163)
T ss_dssp HHHHHHTTCTT-SCHHHHTTBHHHHHHHHHHHHHHTTCCCCCCCCGGG
T ss_pred HHHHHHcCCcc-cChhhcCCCHHHHHHHHHHHHHHcCCCCCCCCcccc
Confidence 99999998764 345689999999999999999999987655444433
No 3
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3e-39 Score=290.34 Aligned_cols=113 Identities=34% Similarity=0.722 Sum_probs=107.3
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHHH
Q 012423 4 TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTF 83 (464)
Q Consensus 4 ~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~f 83 (464)
+++|+.|++.|+|++||||++++|+|||++||||||++|+|+||.||+||||||||+||.|++++|++|+.+||.++|+|
T Consensus 24 ~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an~~ 103 (138)
T 2owa_A 24 DNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNY 103 (138)
T ss_dssp HHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHHHH
Confidence 34556699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-CCCCCCCCcccccCChhHHHHHHHHHHHHc
Q 012423 84 LSQ-YGIPKETDIVTKYNTNAASIYRDRIQAIAE 116 (464)
Q Consensus 84 ~ea-~~~~~e~~I~~KY~s~aa~~YrekL~a~~e 116 (464)
|++ ++..+..++++||+++++..||++|.++++
T Consensus 104 ~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL~~~~~ 137 (138)
T 2owa_A 104 FKQVLGVNFSPKTKEYASSICGRQYKQILDSEIS 137 (138)
T ss_dssp HHHHTCTTCCGGGCHHHHSHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHhhHHHHHHHHHHHHHHh
Confidence 998 888778899999999999999999999875
No 4
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=291.08 Aligned_cols=113 Identities=48% Similarity=0.977 Sum_probs=108.1
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCC-CCHHHHHHHHhcChHHHH
Q 012423 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLN 81 (464)
Q Consensus 3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~-Ws~~eL~~Mk~GGN~~an 81 (464)
..++|+.|++.|+|++||||++++|+|||++||||||++|+||||.||+||||||||+||. |+++||++|+.+||.++|
T Consensus 16 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an 95 (149)
T 2crw_A 16 ILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASAS 95 (149)
T ss_dssp HHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999996 999999999999999999
Q ss_pred HHHhhCCCCCCCCcccccCChhHHHHHHHHHHHHc
Q 012423 82 TFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAE 116 (464)
Q Consensus 82 ~f~ea~~~~~e~~I~~KY~s~aa~~YrekL~a~~e 116 (464)
+||++++.+ ..+|++||++++|.+||++|.++++
T Consensus 96 ~~~e~~~~~-~~~i~~KY~s~~a~~Yr~~l~~~~~ 129 (149)
T 2crw_A 96 SFFHQHGCS-TNDTNAKYNSRAAQLYREKIKSLAS 129 (149)
T ss_dssp HHHHHHCCC-CCCHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CcchhhCcCcHHHHHHHHHHHHHHH
Confidence 999998876 6789999999999999999999876
No 5
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=286.17 Aligned_cols=113 Identities=46% Similarity=0.948 Sum_probs=107.5
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCC-CCHHHHHHHHhcChHHHH
Q 012423 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLN 81 (464)
Q Consensus 3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~-Ws~~eL~~Mk~GGN~~an 81 (464)
.+++|+.|++.|+|++|+||++++|+|||++||||||++|+|+||.||+||||||||+||. |+++||++|+.+||.++|
T Consensus 24 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an 103 (144)
T 2p57_A 24 IQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANAT 103 (144)
T ss_dssp HHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999999996 999999999999999999
Q ss_pred HHHhhCCCCCCCCcccccCChhHHHHHHHHHHHHc
Q 012423 82 TFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAE 116 (464)
Q Consensus 82 ~f~ea~~~~~e~~I~~KY~s~aa~~YrekL~a~~e 116 (464)
+||++++.+. .+|++||++++|..||++|+++++
T Consensus 104 ~~~e~~g~~~-~~~~~KY~s~aA~~Yr~~l~~~~~ 137 (144)
T 2p57_A 104 AFFRQHGCTA-NDANTKYNSRAAQMYREKIRQLGS 137 (144)
T ss_dssp HHHHHTTCCC-CSHHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC-CchhhccCcHHHHHHHHHHHHHHH
Confidence 9999998765 489999999999999999999875
No 6
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=1.6e-35 Score=266.56 Aligned_cols=120 Identities=27% Similarity=0.518 Sum_probs=104.9
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 012423 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (464)
Q Consensus 3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~ 82 (464)
..++|++|++.|+|++|+|||+++|+|||++||||||++|+||||.||+| |+||||+||.|++++|++|+.+||.++|+
T Consensus 12 ~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~ 90 (140)
T 2olm_A 12 HLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQ 90 (140)
T ss_dssp HHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHH
Confidence 46789999999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHhhCCCCCCCCcccccCChhHHHHHHHHHHHHcCCCCCCCchh
Q 012423 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVV 126 (464)
Q Consensus 83 f~ea~~~~~e~~I~~KY~s~aa~~YrekL~a~~eGr~w~~pP~~ 126 (464)
|||++..+....++ +......++++|+++|+.+.|..||..
T Consensus 91 ~~e~~~~~~~~~~P---~~~d~~~~~~fIr~KYe~k~f~~~~~~ 131 (140)
T 2olm_A 91 IWLGLFDDRSSAIP---DFRDPQKVKEFLQEKYEKKRWYVPPEQ 131 (140)
T ss_dssp HHTTTCCTTTSCCC---CTTCHHHHHHHHHHHHTSCTTCCCHHH
T ss_pred HHHhhCCcccCCCC---CCCCHHHHHHHHHHHHcCCeeeCCccc
Confidence 99976544322222 122345788999999999999987653
No 7
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=264.72 Aligned_cols=115 Identities=36% Similarity=0.625 Sum_probs=101.1
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHHH
Q 012423 4 TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTF 83 (464)
Q Consensus 4 ~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~f 83 (464)
+++|++|++.|+|++|+||++++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||++|+.+||.++|+|
T Consensus 15 ~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~ 94 (134)
T 2iqj_A 15 QAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRL 94 (134)
T ss_dssp HHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCCCcccccCChhHHHHHHHHHHHHcCCCCCCCc
Q 012423 84 LSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (464)
Q Consensus 84 ~ea~~~~~e~~I~~KY~s~aa~~YrekL~a~~eGr~w~~pP 124 (464)
|+++.++. . .+ .......+++|+++|+.+.|.++.
T Consensus 95 ~e~~lp~~-~-~~----P~~~~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 95 YEAYLPET-F-RR----PQIDPAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp HTTTCCSS-C-CC----CCSHHHHHHHHHHHHTSCTTCCTT
T ss_pred HHhcCCcc-C-CC----CCchHHHHHHHHHHHhCCeeeCCc
Confidence 99765432 1 11 111234678999999999999754
No 8
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=266.20 Aligned_cols=116 Identities=34% Similarity=0.545 Sum_probs=102.0
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 012423 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (464)
Q Consensus 3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~ 82 (464)
.+++|++|++.|+|++||||++++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||++|+.+||.++|+
T Consensus 16 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~ 95 (141)
T 2crr_A 16 HQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARL 95 (141)
T ss_dssp HHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCCcccccCChhHHHHHHHHHHHHcCCCCCCCc
Q 012423 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (464)
Q Consensus 83 f~ea~~~~~e~~I~~KY~s~aa~~YrekL~a~~eGr~w~~pP 124 (464)
||+++.++.. .+ -.. ....+++|+++|+.+.|.+++
T Consensus 96 ~~e~~lp~~~--~~--P~~--~~~~e~fIr~KY~~k~f~~~~ 131 (141)
T 2crr_A 96 LYEANLPENF--RR--PQT--DQAVEFFIRDKYEKKKYYDKN 131 (141)
T ss_dssp HGGGSCCTTC--CC--CCS--HHHHHHHHHHHHTSCTTCCCG
T ss_pred HHHhcCCccc--CC--CCc--hHHHHHHHHHHHhcCcccCCC
Confidence 9998754321 11 111 134578999999999999753
No 9
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.98 E-value=5.7e-33 Score=274.94 Aligned_cols=121 Identities=48% Similarity=0.976 Sum_probs=115.0
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 012423 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (464)
Q Consensus 3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~ 82 (464)
++++|++|++.|+|++|+||++++|+|||++||||||++|+|+||.||+|||+||||+||.|++++|++|+.+||.++|+
T Consensus 24 ~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n~ 103 (329)
T 3o47_A 24 TRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFRE 103 (329)
T ss_dssp HHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCC-CCCCCcccccCChhHHHHHHHHHHHHcCCCCCCC
Q 012423 83 FLSQYGI-PKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDP 123 (464)
Q Consensus 83 f~ea~~~-~~e~~I~~KY~s~aa~~YrekL~a~~eGr~w~~p 123 (464)
||+++.. .....+.++|.+.++..|+++|..+++++.|...
T Consensus 104 ~~e~~~~~~~~~~i~~~y~s~~A~lYr~kl~~~~~~~~~~~~ 145 (329)
T 3o47_A 104 FLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLE 145 (329)
T ss_dssp HHHTCSSCCTTCCHHHHHHSHHHHHHHHHHHHHHTTCCCCSC
T ss_pred HHHhcCCCCCCCCccccccchHHHHHhhhccccccCCccccc
Confidence 9998754 4478899999999999999999999999999864
No 10
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.96 E-value=2.5e-30 Score=260.79 Aligned_cols=119 Identities=32% Similarity=0.493 Sum_probs=100.4
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHHH
Q 012423 4 TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTF 83 (464)
Q Consensus 4 ~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~f 83 (464)
+++|+.|++.|+|++||||++++|+|||++||||||++|+||||.||+|||+||||+||.|++++|++|+.+||.++|+|
T Consensus 33 ~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~ 112 (368)
T 3jue_A 33 GHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQI 112 (368)
T ss_dssp CCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCCCcccccCChhHHHHHHHHHHHHcCCCCCCCc
Q 012423 84 LSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (464)
Q Consensus 84 ~ea~~~~~e~~I~~KY~s~aa~~YrekL~a~~eGr~w~~pP 124 (464)
||+...+... .+..-... .....++|+++|+.+.|..+.
T Consensus 113 ~e~~~~~~~~-~kp~~~~~-~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 113 YEARVEAMAV-KKPGPSCS-RQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp HTTTTTTTTC-CCCCTTSC-HHHHHHHHHHHHTSCTTCCSC
T ss_pred HHhhcccccC-cCCCCCCC-HHHHHHHHHHHHHhhcccccc
Confidence 9976543111 11111111 224466899999999998653
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.96 E-value=3.2e-30 Score=262.98 Aligned_cols=118 Identities=31% Similarity=0.570 Sum_probs=100.9
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 012423 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (464)
Q Consensus 3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~ 82 (464)
.+++|++|++.|+|+.||||++++|+|||++||||||++|+|+||.| +|||+||||+||.|++++|++|+.+||.++|+
T Consensus 21 ~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~~ 99 (386)
T 3lju_X 21 RRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARA 99 (386)
T ss_dssp HHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHHH
Confidence 57899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhCCCCCCCCcccccCChhHHHHHHHHHHHHcCCCCCCCc
Q 012423 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (464)
Q Consensus 83 f~ea~~~~~e~~I~~KY~s~aa~~YrekL~a~~eGr~w~~pP 124 (464)
||+++.++. . .+..-.. ......++|+++|+.+.|..|+
T Consensus 100 ~~e~~~~~~-~-~~p~~~~-~~~~~e~fIr~KY~~~~f~~~~ 138 (386)
T 3lju_X 100 RFESKVPSF-Y-YRPTPSD-CQLLREQWIRAKYERQEFIYPE 138 (386)
T ss_dssp HHTTTCCTT-S-CCCCTTS-CHHHHHHHHHHHHTSCTTTSGG
T ss_pred HHhccCCcc-C-CCCCCcc-chHHHHHEHHhhhCCCEEECCc
Confidence 999775432 1 1111111 1123345899999999999764
No 12
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=232.55 Aligned_cols=119 Identities=27% Similarity=0.457 Sum_probs=99.8
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 012423 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (464)
Q Consensus 3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~ 82 (464)
++++|++|++.|+|++|+||++++|+|||++||||||++|+|+||.||+|||+||||+||.|++++|.+|+.+||..+|+
T Consensus 29 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~ 108 (301)
T 2b0o_E 29 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNE 108 (301)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCCcccccCChhHHHHHHHHHHHHcCCCCCCC
Q 012423 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDP 123 (464)
Q Consensus 83 f~ea~~~~~e~~I~~KY~s~aa~~YrekL~a~~eGr~w~~p 123 (464)
+|++........... . .......+++|.++|+.+.|..+
T Consensus 109 i~E~~l~~~~~~kP~-~-~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 109 VMEAQLPSHGGPKPS-A-ESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHTTTCCSSSCSCCC-T-TCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHhhhhccCCCCC-C-cccHHHHHHHHHHHHHhhhhhcc
Confidence 999654332111111 1 11233456688899998887653
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=1e-27 Score=230.14 Aligned_cols=119 Identities=27% Similarity=0.504 Sum_probs=102.0
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 012423 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (464)
Q Consensus 3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~ 82 (464)
++++|++|++.|+|+.|+|||+++|+|+|++||||||++|+|+||.||+|||+||||+||.|.+++|..|+.+||..+++
T Consensus 4 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~ 83 (278)
T 1dcq_A 4 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE 83 (278)
T ss_dssp HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCCcccccCChhHHHHHHHHHHHHcCCCCCCC
Q 012423 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDP 123 (464)
Q Consensus 83 f~ea~~~~~e~~I~~KY~s~aa~~YrekL~a~~eGr~w~~p 123 (464)
||+...... .+.+...... .....++|+++|..+.|..+
T Consensus 84 i~e~~l~~~-~~~kP~~~s~-~~~~~~fI~aKYl~~~f~~~ 122 (278)
T 1dcq_A 84 IMECCLPSE-DPVKPNPGSD-MIARKDYITAKYMERRYARK 122 (278)
T ss_dssp HHTTTCCSS-SCCSCCTTCC-HHHHHHHHHHHHTTCTTSCC
T ss_pred HHHhhCChh-hcCCCCCCCC-HHHHHHHHHHHHHHhhcccc
Confidence 999654332 2222222222 23567789999999888754
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=2.6e-27 Score=243.64 Aligned_cols=119 Identities=27% Similarity=0.457 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 012423 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (464)
Q Consensus 3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~ 82 (464)
++++|+.|++.|+|+.|+||++++|+|||+++|||||++|+|+||.||+|||+||||+||.|++++|++|+.+||..+|.
T Consensus 10 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an~ 89 (497)
T 3lvq_E 10 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNE 89 (497)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCCcccccCChhHHHHHHHHHHHHcCCCCCCC
Q 012423 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDP 123 (464)
Q Consensus 83 f~ea~~~~~e~~I~~KY~s~aa~~YrekL~a~~eGr~w~~p 123 (464)
+|+............ . .......+++|+++|+.+.|..+
T Consensus 90 i~E~~lp~~~~~kP~-~-~s~~~~re~fIraky~~~~f~~~ 128 (497)
T 3lvq_E 90 VMEAQLPSHGGPKPS-A-ESDMGTRRDYIMAKYVEHRFARR 128 (497)
T ss_dssp HHTTTCCSSSCSCCC-T-TCCHHHHHHHHHHHHTTCTTSCC
T ss_pred HHHhhcccccCCCCC-C-cCcHHHHHHHHHHHhhccccccc
Confidence 999665432222211 1 12224566789999999998764
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=83.78 E-value=0.67 Score=43.65 Aligned_cols=49 Identities=14% Similarity=0.415 Sum_probs=36.6
Q ss_pred CCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcCh
Q 012423 13 QPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGN 77 (464)
Q Consensus 13 ~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN 77 (464)
.|.=..|+.||.+...+.++..|.++|..|...+ ..+.+++..|+..-.
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~ 195 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVR 195 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTT
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHh
Confidence 4455789999999667889999999999995432 356778877765433
No 16
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=81.42 E-value=0.9 Score=33.14 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=30.1
Q ss_pred CCccCCCC-CCCCceEeccceeEehhhhhhhccCCCc
Q 012423 17 KICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (464)
Q Consensus 17 k~CaDCGA-~nPqWASv~~GIFICleCSGiHR~LGvH 52 (464)
+.|++|+. .-|.|=.-..|-.||-.|.-..|..|++
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 38 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVV 38 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCC
Confidence 57999998 4679999999999999999877766553
No 17
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=80.04 E-value=1.1 Score=33.13 Aligned_cols=38 Identities=26% Similarity=0.677 Sum_probs=32.6
Q ss_pred CCCCccCCCC-CCCCceEeccceeEehhhhhhhccCCCc
Q 012423 15 GNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (464)
Q Consensus 15 gNk~CaDCGA-~nPqWASv~~GIFICleCSGiHR~LGvH 52 (464)
..+.|+.|++ .-|.|=.-..|..||-.|.-.++..|++
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 5689999998 4678999999999999999888877765
No 18
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=76.78 E-value=1.2 Score=34.97 Aligned_cols=40 Identities=15% Similarity=0.411 Sum_probs=33.2
Q ss_pred CCCCCCccCCCC-CCCCceEeccceeEehhhhhhhccCCCc
Q 012423 13 QPGNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (464)
Q Consensus 13 ~pgNk~CaDCGA-~nPqWASv~~GIFICleCSGiHR~LGvH 52 (464)
......|++|+. .-|.|=.-..|-.||-.|.-.++..+++
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~ 44 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 44 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSC
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCC
Confidence 456789999998 5779999999999999999877776653
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=73.89 E-value=2.3 Score=33.66 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=32.7
Q ss_pred CCCCCccCCCC-CCCCceEeccceeEehhhhhhhccCCCc
Q 012423 14 PGNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (464)
Q Consensus 14 pgNk~CaDCGA-~nPqWASv~~GIFICleCSGiHR~LGvH 52 (464)
.....|+.|+. .-|.|-.-..|..||-.|.-..+..+++
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~ 46 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVV 46 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCC
Confidence 45689999998 5789999999999999998877766654
No 20
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=69.98 E-value=3.1 Score=33.63 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=32.9
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeEehhhhhh
Q 012423 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (464)
Q Consensus 3 a~r~L~~L-~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGi 45 (464)
.|+++++| ..+...-.|.-||........ .||+.|..|.-.
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~~ 54 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGYK 54 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCcE
Confidence 57788887 788889999999987666554 599999999643
No 21
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=59.74 E-value=4.4 Score=35.01 Aligned_cols=37 Identities=27% Similarity=0.719 Sum_probs=30.2
Q ss_pred CCCccCCCC-CCCCceEeccceeEehhhhhhhccCCCc
Q 012423 16 NKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (464)
Q Consensus 16 Nk~CaDCGA-~nPqWASv~~GIFICleCSGiHR~LGvH 52 (464)
-+.|++|++ .-|.|-.-..|-+||-.|.-.++..|++
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~n 42 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQN 42 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccc
Confidence 478999998 5788999899999999998777655554
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=54.09 E-value=4.8 Score=40.10 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=23.6
Q ss_pred ChHHHHHHHHh---cCCCC--CCccCCCCCCCCc-eEeccceeEehhhhhhhc
Q 012423 1 MAATRRLRDLQ---SQPGN--KICVDCAQKNPQW-ASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 1 maa~r~L~~L~---~~pgN--k~CaDCGA~nPqW-ASv~~GIFICleCSGiHR 47 (464)
|+||+.+..-. ...-| ..|-+|+..+|.- ....-|-.||.+|.-|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp ----------------CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CccHHHHHhcccccCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 88888877652 22223 4799999975422 245679999999987653
No 23
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=51.61 E-value=3.8 Score=32.87 Aligned_cols=37 Identities=19% Similarity=0.454 Sum_probs=29.9
Q ss_pred CCCCccCCCC-CCCCceE--eccceeEehhhhhhhccCCCc
Q 012423 15 GNKICVDCAQ-KNPQWAS--VSYGVFMCLECSGKHRGLGVH 52 (464)
Q Consensus 15 gNk~CaDCGA-~nPqWAS--v~~GIFICleCSGiHR~LGvH 52 (464)
....|+.|+. .-|.|=. -.-| .||-.|.-.++..+++
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT 46 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC
Confidence 4579999998 5789998 5777 8999999888877664
No 24
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=48.16 E-value=6.2 Score=32.40 Aligned_cols=41 Identities=20% Similarity=0.547 Sum_probs=30.6
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeEehhhhhh
Q 012423 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (464)
Q Consensus 3 a~r~L~~L-~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGi 45 (464)
.|+++++| ..+...-.|..||+.. --.+.-||+.|..|-..
T Consensus 13 lRk~vk~ie~~q~~~y~Cp~CG~~~--v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 13 SRRRVAEIESEMNEDHACPNCGEDR--VDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEE--EEEEETTEEEETTTCCE
T ss_pred HHHHHHHHHHhccccCcCCCCCCcc--eeccCCCeEECCCCCCE
Confidence 46777777 6666788999999843 23455799999999653
No 25
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=46.33 E-value=4.6 Score=35.33 Aligned_cols=40 Identities=18% Similarity=0.551 Sum_probs=30.0
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeEehhhhh
Q 012423 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (464)
Q Consensus 3 a~r~L~~L-~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSG 44 (464)
.|+++++| ..+...-.|.-||..... -+..|||.|..|--
T Consensus 46 lRK~vkkiE~~q~akytCPfCGk~~vK--R~avGIW~C~~Cgk 86 (116)
T 3cc2_Z 46 SRRRVAEIESEMNEDHACPNCGEDRVD--RQGTGIWQCSYCDY 86 (116)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEEE--EEETTEEEETTTCC
T ss_pred HHHHHHHHHHHhccCCcCCCCCCceeE--ecCceeEECCCCCC
Confidence 46677777 667778899999975433 34469999999954
No 26
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=46.23 E-value=11 Score=30.99 Aligned_cols=30 Identities=27% Similarity=0.779 Sum_probs=24.4
Q ss_pred CCCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 15 gNk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
+++.|.-|+.+.. ...|||+.|..|+++.|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 4688999997643 57899999999998765
No 27
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=44.83 E-value=15 Score=31.69 Aligned_cols=39 Identities=15% Similarity=0.409 Sum_probs=32.9
Q ss_pred CCCCCccCCCC-CCCCceEeccceeEehhhhhhhccCCCc
Q 012423 14 PGNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (464)
Q Consensus 14 pgNk~CaDCGA-~nPqWASv~~GIFICleCSGiHR~LGvH 52 (464)
.....|+.|+. .-|.|-.-..|-.||-.|.-.++..+++
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 45689999997 5799999999999999999877776664
No 28
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=41.23 E-value=16 Score=29.71 Aligned_cols=31 Identities=23% Similarity=0.627 Sum_probs=25.9
Q ss_pred CCCCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 14 pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
.+...|.-|+.+.. ...||++.|..|+++.|
T Consensus 2 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (84)
T 1hcq_A 2 KETRYCAVCNDYAS---GYHYGVWSCEGCKAFFK 32 (84)
T ss_dssp CCCCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCcCcEECCCCC---CeeeCccchHHhhhhhh
Confidence 35678999997643 67999999999999877
No 29
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=40.13 E-value=8.9 Score=34.49 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=23.1
Q ss_pred CCCCCccCCCCCCCC-ceEeccceeEehhhhhhhc
Q 012423 14 PGNKICVDCAQKNPQ-WASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 14 pgNk~CaDCGA~nPq-WASv~~GIFICleCSGiHR 47 (464)
+.--+|.+||.+=|. -.-.--++-+|+.|...|-
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 456799999997542 1122336778999998654
No 30
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=39.44 E-value=13 Score=32.03 Aligned_cols=33 Identities=24% Similarity=0.676 Sum_probs=24.1
Q ss_pred cCCCCCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 12 SQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 12 ~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
..+....|.-|+.+. ....|||+.|..|+++.|
T Consensus 5 ~~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFR 37 (113)
T 2a66_A 5 DEDLEELCPVCGDKV---SGYHYGLLTCESCKGFFK 37 (113)
T ss_dssp -----CBCTTTCCBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCCCcEeCCCC---cceeeCcccHHHHHHHHh
Confidence 445668899999753 367999999999999876
No 31
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=38.79 E-value=15 Score=31.21 Aligned_cols=32 Identities=25% Similarity=0.648 Sum_probs=25.4
Q ss_pred CCCCCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 13 QPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 13 ~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
.+....|.-|+.+. ....|||+.|..|+++.|
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFR 35 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFK 35 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhc
Confidence 35678899999753 367999999999999877
No 32
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.21 E-value=14 Score=30.52 Aligned_cols=40 Identities=23% Similarity=0.579 Sum_probs=28.8
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeEehhhhh
Q 012423 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (464)
Q Consensus 3 a~r~L~~L-~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSG 44 (464)
.|+++.+| .++...-.|.-||.....- +..|||-|..|.-
T Consensus 21 lRK~vkkie~~q~~ky~CpfCGk~~vkR--~a~GIW~C~kCg~ 61 (83)
T 3j21_i 21 IRRRVAAVEAKMRQKHTCPVCGRKAVKR--ISTGIWQCQKCGA 61 (83)
T ss_dssp HHHHHHHHHHHHHSCBCCSSSCSSCEEE--EETTEEEETTTCC
T ss_pred HHHHHHHHHHHhhcccCCCCCCCceeEe--cCcCeEEcCCCCC
Confidence 35566665 4445677899999986544 4579999999953
No 33
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=36.83 E-value=8.7 Score=33.21 Aligned_cols=31 Identities=16% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCCCccCCCCCCCCc-eEeccceeEehhhhhh
Q 012423 15 GNKICVDCAQKNPQW-ASVSYGVFMCLECSGK 45 (464)
Q Consensus 15 gNk~CaDCGA~nPqW-ASv~~GIFICleCSGi 45 (464)
+..+|.+|+...-.+ ..-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 456899999864433 3568999999999865
No 34
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=36.67 E-value=18 Score=30.39 Aligned_cols=39 Identities=23% Similarity=0.481 Sum_probs=28.4
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeEehhhh
Q 012423 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECS 43 (464)
Q Consensus 3 a~r~L~~L-~~~pgNk~CaDCGA~nPqWASv~~GIFICleCS 43 (464)
.|+++.+| .++...-.|.-||.....- +..|||-|..|.
T Consensus 22 lRK~vkkie~~q~~ky~CpfCgk~~vkR--~a~GIW~C~~C~ 61 (92)
T 3izc_m 22 LRRQVKKLEIQQHARYDCSFCGKKTVKR--GAAGIWTCSCCK 61 (92)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCSSCCEE--EETTEEECTTTC
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCceeee--cccceEEcCCCC
Confidence 35556665 4455677899999886555 457999999994
No 35
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=36.59 E-value=21 Score=30.88 Aligned_cols=30 Identities=23% Similarity=0.736 Sum_probs=25.4
Q ss_pred CCCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 15 gNk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
....|.-||.+.. ...|||+.|..|+++.|
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 36 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFR 36 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhh
Confidence 4678999997643 68999999999999877
No 36
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=36.30 E-value=17 Score=30.00 Aligned_cols=31 Identities=29% Similarity=0.675 Sum_probs=25.9
Q ss_pred CCCCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 14 pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
+.+..|.-|+.+.. ...|||+.|..|+++.|
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFK 35 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhh
Confidence 45678999998654 57899999999999877
No 37
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=35.83 E-value=4.7 Score=34.78 Aligned_cols=33 Identities=24% Similarity=0.565 Sum_probs=22.1
Q ss_pred CCCCccCCCCCCCC-ceEeccceeEehhhhhhhc
Q 012423 15 GNKICVDCAQKNPQ-WASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 15 gNk~CaDCGA~nPq-WASv~~GIFICleCSGiHR 47 (464)
.--+|.+||.+=|. -.-.--++.+|++|...+-
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 35799999997542 1122335778999997554
No 38
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=35.04 E-value=21 Score=29.64 Aligned_cols=30 Identities=27% Similarity=0.804 Sum_probs=24.8
Q ss_pred CCCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 15 gNk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
....|.-|+.+.. ...|||+.|..|+++.|
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFR 38 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFK 38 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHH
Confidence 3578999997653 67999999999999876
No 39
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=33.92 E-value=18 Score=27.43 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=20.5
Q ss_pred CCccCCCCCCCCceEeccceeEehhhhhh
Q 012423 17 KICVDCAQKNPQWASVSYGVFMCLECSGK 45 (464)
Q Consensus 17 k~CaDCGA~nPqWASv~~GIFICleCSGi 45 (464)
.+|-+|+..... ....-|..||..|.-+
T Consensus 12 ~~Cp~C~~~~lv-~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILV-EDYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCE-ECSSSCCEECTTTCCE
T ss_pred ccCcCCCCCcee-EeCCCCeEEeCCCCCE
Confidence 479999986532 2446799999999654
No 40
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=33.53 E-value=16 Score=30.80 Aligned_cols=28 Identities=32% Similarity=0.781 Sum_probs=23.5
Q ss_pred CCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 17 KICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 17 k~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
..|.-||.+.. ...|||+.|..|+++.|
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFR 29 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFR 29 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhe
Confidence 57999997643 57899999999999877
No 41
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=32.06 E-value=27 Score=28.70 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=22.6
Q ss_pred CccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 18 ICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 18 ~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
.|.-|+.+.. ...|||+.|..|+++.|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFK 28 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhce
Confidence 5888997643 57999999999999876
No 42
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=32.03 E-value=19 Score=30.22 Aligned_cols=40 Identities=18% Similarity=0.485 Sum_probs=28.1
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeEehhhhh
Q 012423 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (464)
Q Consensus 3 a~r~L~~L-~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSG 44 (464)
.|+++.+| .++...-.|.-||.....- +..|||-|..|.-
T Consensus 22 lRK~vkkie~~q~~ky~CpfCgk~~vkR--~a~GIW~C~~Cg~ 62 (92)
T 3iz5_m 22 LRKQIKKMEVSQHSKYFCEFCGKFAVKR--KAVGIWGCKDCGK 62 (92)
T ss_dssp HHHHHHHHHHHHHSCBCCTTTCSSCBEE--EETTEEECSSSCC
T ss_pred HHHHHHHHHHHHhccccCcccCCCeeEe--cCcceEEcCCCCC
Confidence 34555554 3445566899999986554 4579999999943
No 43
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=29.15 E-value=22 Score=29.00 Aligned_cols=28 Identities=39% Similarity=0.795 Sum_probs=23.1
Q ss_pred CCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 17 KICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 17 k~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
+.|.-|+.+.. ...|||+.|..|+++.|
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFR 32 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHH
Confidence 56999997653 56899999999999877
No 44
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=28.56 E-value=12 Score=30.13 Aligned_cols=38 Identities=24% Similarity=0.504 Sum_probs=26.7
Q ss_pred HHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeEehhhh
Q 012423 4 TRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECS 43 (464)
Q Consensus 4 ~r~L~~L-~~~pgNk~CaDCGA~nPqWASv~~GIFICleCS 43 (464)
|+++++| .++...-.|.-||.....- +..||+-|..|.
T Consensus 13 RK~vkkie~~q~~ky~C~fCgk~~vkR--~a~GIW~C~~C~ 51 (72)
T 3jyw_9 13 RRQVKKLEIQQHARYDCSFCGKKTVKR--GAAGIWTCSCCK 51 (72)
T ss_dssp HTTTHHHHHHHHSCBCCSSCCSSCBSB--CSSSCBCCSSSC
T ss_pred HHHHHHHHHHhccCccCCCCCCceeEe--cCCCeEECCCCC
Confidence 3444444 3444567899999876555 457999999995
No 45
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=28.45 E-value=19 Score=30.16 Aligned_cols=29 Identities=31% Similarity=0.867 Sum_probs=23.1
Q ss_pred CCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 16 NKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 16 Nk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
...|.-||.+.. ...|||+.|..|+++.|
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 31 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFK 31 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHH
Confidence 357999997653 57899999999999877
No 46
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=28.02 E-value=27 Score=34.86 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=21.1
Q ss_pred CccCCCCCCCCc-eEeccceeEehhhhhh
Q 012423 18 ICVDCAQKNPQW-ASVSYGVFMCLECSGK 45 (464)
Q Consensus 18 ~CaDCGA~nPqW-ASv~~GIFICleCSGi 45 (464)
+|-+|+...|.- ....-|-.||.+|.-|
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 799999844442 3557899999999643
No 47
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=27.76 E-value=28 Score=28.88 Aligned_cols=29 Identities=31% Similarity=0.730 Sum_probs=23.9
Q ss_pred CCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 16 NKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 16 Nk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
...|.-|+.+.. ...|||+.|..|+++.|
T Consensus 7 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (94)
T 1a6y_A 7 VLLCKVCGDVAS---GFHYGVLACEGCKGFFR 35 (94)
T ss_dssp -CBCTTTSSBCC---EEETTEEECHHHHHHHH
T ss_pred CCcCcEeCCCCc---ceEeCccchhhhhhehh
Confidence 467999997653 67999999999999877
No 48
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=27.68 E-value=18 Score=30.33 Aligned_cols=29 Identities=24% Similarity=0.700 Sum_probs=24.2
Q ss_pred CCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 16 NKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 16 Nk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
...|.-|+.+.. ...|||+.|..|+++.|
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFK 32 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhe
Confidence 467999997643 67999999999999877
No 49
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=27.48 E-value=26 Score=35.78 Aligned_cols=30 Identities=33% Similarity=0.655 Sum_probs=24.5
Q ss_pred CCCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 15 gNk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
-+..|.-||.+.- ...|||+.|..|+++.|
T Consensus 49 ~~~~C~vC~~~~~---g~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 49 MAIECRVCGDKAS---GFHYGVHACEGCKGFFR 78 (419)
T ss_dssp -CCCCSSSCSCCC---SBCSSSBCCHHHHHHHH
T ss_pred CCCcCeECCCcCC---CCccCcccchhhhHHHc
Confidence 3678999998754 35899999999999866
No 50
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=27.04 E-value=23 Score=30.23 Aligned_cols=30 Identities=23% Similarity=0.639 Sum_probs=23.9
Q ss_pred CCCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 15 gNk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
....|.-||.+.. ...|||+.|..|+++.|
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 34 (110)
T 1kb2_A 5 VPRICGVCGDRAT---GFHFNAMTCEGCKGFFR 34 (110)
T ss_dssp --CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred cCCCCcEeCCCCC---ceEeCchhHhhhhhhhe
Confidence 3467999997653 57899999999999877
No 51
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=25.97 E-value=26 Score=26.87 Aligned_cols=39 Identities=26% Similarity=0.699 Sum_probs=28.8
Q ss_pred CCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCccccee
Q 012423 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVR 57 (464)
Q Consensus 14 pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVR 57 (464)
++-+.|.-||.+.- .--.||+.||-.|- |.+-..|-|||
T Consensus 16 ~g~~rC~vcGr~~g--~iRkfGL~~cR~cf---Re~A~~iGF~k 54 (56)
T 3iz6_N 16 AGSRVCRVCGNSHG--LIRKYGLMCCRQCF---RSDAKDIGFIK 54 (56)
T ss_dssp CCCCCCSSCCCSCC--CTTTTSCTTHHHHH---HTTCCSTTCCS
T ss_pred CCcceeecCCCCcc--cccccCCcHHHHHH---HHHHHhcCcee
Confidence 35689999998643 23489999999884 66666777765
No 52
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=24.85 E-value=18 Score=31.05 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=28.3
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeEehhhhh
Q 012423 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (464)
Q Consensus 3 a~r~L~~L-~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSG 44 (464)
.|+++.+| .++...-.|.-||.....- +..|||-|..|.-
T Consensus 22 lRK~vkkIE~~q~aky~CpfCgk~~vKR--~a~GIW~C~kCg~ 62 (103)
T 4a17_Y 22 LRKVVKKFEITQHAKYGCPFCGKVAVKR--AAVGIWKCKPCKK 62 (103)
T ss_dssp HHHHHHHHHHHHHSCEECTTTCCEEEEE--EETTEEEETTTTE
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCceeee--cCcceEEcCCCCC
Confidence 35556665 4455667899999875444 4579999999953
No 53
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.33 E-value=16 Score=27.57 Aligned_cols=25 Identities=24% Similarity=0.687 Sum_probs=20.4
Q ss_pred CCCCccCCCCCCCCceEeccceeEehhhhhh
Q 012423 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (464)
Q Consensus 15 gNk~CaDCGA~nPqWASv~~GIFICleCSGi 45 (464)
...+|..|++. +..||+-|..|-..
T Consensus 13 ~k~iCpkC~a~------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGAT------NPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCE------ECTTCSSCSSSSSC
T ss_pred CCccCCCCCCc------CCCCceecCCCCCc
Confidence 46799999998 55799999999543
No 54
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=22.86 E-value=22 Score=29.02 Aligned_cols=30 Identities=30% Similarity=0.826 Sum_probs=24.5
Q ss_pred CCCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 15 gNk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
....|.-|+.+.. ...||++.|..|++..|
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 33 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFK 33 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHH
Confidence 4567999997643 56899999999999877
No 55
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=21.93 E-value=44 Score=28.86 Aligned_cols=32 Identities=25% Similarity=0.667 Sum_probs=23.8
Q ss_pred CCCCCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 13 QPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 13 ~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
....+.|.-|+.+.- ...|||+.|..|+++-|
T Consensus 26 ~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 26 NAPPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp ----CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 345678999998653 57899999999998765
No 56
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=21.61 E-value=33 Score=27.47 Aligned_cols=27 Identities=30% Similarity=0.753 Sum_probs=22.2
Q ss_pred CccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 18 ICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 18 ~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
.|.-|+.+.. ...||++.|..|++..|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFR 28 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeee
Confidence 5888887654 57899999999999876
Done!