Query 012423
Match_columns 464
No_of_seqs 258 out of 1136
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 09:10:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012423.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012423hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dcqa2 g.45.1.1 (A:247-368) P 100.0 9.4E-36 6.8E-40 259.8 10.5 117 3-122 2-119 (122)
2 d1u5ka2 g.45.1.2 (A:81-237) Re 88.4 0.076 5.6E-06 44.9 1.7 34 10-43 64-97 (157)
3 d1y0ja1 g.39.1.1 (A:200-238) E 70.1 1.5 0.00011 29.9 2.9 36 16-51 2-38 (39)
4 d2vuti1 g.39.1.1 (I:671-712) E 67.3 1.5 0.00011 30.3 2.5 40 18-61 2-42 (42)
5 d3gata_ g.39.1.1 (A:) Erythroi 63.6 1.9 0.00014 32.3 2.6 36 17-52 5-41 (66)
6 d2cora1 g.39.1.3 (A:43-73) Pin 48.9 5.6 0.00041 25.5 2.5 30 18-50 1-30 (31)
7 d1d4ua2 g.39.1.5 (A:1-36) DNA 43.9 2.6 0.00019 28.1 0.3 30 14-43 3-33 (36)
8 d1pfta_ g.41.3.1 (A:) Transcri 42.2 7.1 0.00052 27.3 2.5 30 15-45 4-33 (50)
9 d1hcqa_ g.39.1.2 (A:) Estrogen 40.5 8.7 0.00063 28.8 2.9 31 14-47 2-32 (74)
10 d2crga1 a.4.1.3 (A:8-64) Metas 32.6 9.4 0.00069 27.0 1.9 14 61-74 1-14 (57)
11 d2nllb_ g.39.1.2 (B:) Thyroid 32.3 8.3 0.0006 30.6 1.7 29 16-47 1-29 (103)
12 d1jj2y_ g.41.8.1 (Y:) Ribosoma 31.5 9.8 0.00071 28.9 1.9 40 3-44 13-53 (73)
13 d1vqoz1 g.41.8.1 (Z:10-82) Rib 29.3 11 0.0008 28.6 1.8 40 3-44 13-53 (73)
14 d1dl6a_ g.41.3.1 (A:) Transcri 28.4 13 0.00092 26.8 1.9 31 14-45 9-39 (58)
15 d1lo1a_ g.39.1.2 (A:) Steroid 27.1 9.5 0.00069 29.6 1.1 29 16-47 4-32 (90)
16 d1kb2a_ g.39.1.2 (A:) Vitamin 27.0 13 0.00094 28.7 1.9 28 17-47 1-28 (89)
17 d2g45a1 g.44.1.5 (A:173-285) U 23.5 20 0.0015 28.8 2.5 26 14-39 22-47 (113)
18 d1a6ya_ g.39.1.2 (A:) Orphan n 21.6 21 0.0015 26.7 2.2 27 18-47 2-28 (78)
19 d2idaa1 g.44.1.5 (A:1-102) Hyp 20.3 9.3 0.00068 30.4 -0.2 26 14-43 16-41 (102)
No 1
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00 E-value=9.4e-36 Score=259.75 Aligned_cols=117 Identities=29% Similarity=0.530 Sum_probs=102.6
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 012423 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (464)
Q Consensus 3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~ 82 (464)
|+++|++|++.|+|++||||++++|+|||++||||||++|||+||.||+|||+||||+||.|+++||++|+.+||.++|+
T Consensus 2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~ 81 (122)
T d1dcqa2 2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE 81 (122)
T ss_dssp HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCCcccccCChhHH-HHHHHHHHHHcCCCCCC
Q 012423 83 FLSQYGIPKETDIVTKYNTNAAS-IYRDRIQAIAEGRPWRD 122 (464)
Q Consensus 83 f~ea~~~~~e~~I~~KY~s~aa~-~YrekL~a~~eGr~w~~ 122 (464)
||+++....+ + .|+...... ..+++|+++|+.+.|..
T Consensus 82 ~~ea~~~~~~-~--~kp~~~~~~~~r~~fI~~KY~~k~f~~ 119 (122)
T d1dcqa2 82 IMECCLPSED-P--VKPNPGSDMIARKDYITAKYMERRYAR 119 (122)
T ss_dssp HHTTTCCSSS-C--CSCCTTCCHHHHHHHHHHHHTTCTTSC
T ss_pred HHHhhCCccc-C--cCCCCCccHHHHHHHHHHHHHhCcccc
Confidence 9997654322 2 234433332 34567999999999974
No 2
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=88.39 E-value=0.076 Score=44.90 Aligned_cols=34 Identities=21% Similarity=0.573 Sum_probs=30.1
Q ss_pred HhcCCCCCCccCCCCCCCCceEeccceeEehhhh
Q 012423 10 LQSQPGNKICVDCAQKNPQWASVSYGVFMCLECS 43 (464)
Q Consensus 10 L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCS 43 (464)
+-=.|.-..|+.||.+.+.|.++.-|.|+|..|.
T Consensus 64 ~G~~P~l~~C~~cg~~~~~~f~~~~Gg~~C~~c~ 97 (157)
T d1u5ka2 64 AGVIPQTARCARCGAPDPEHPDPLGGQLLCSKCA 97 (157)
T ss_dssp SSSCCCCSBCTTTCCBSCCEECTTTSSEECTTTC
T ss_pred cCCCCChhhHhcCCCCCCCcccccCCeeECCCCC
Confidence 3456778899999999999999999999999995
No 3
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=70.12 E-value=1.5 Score=29.87 Aligned_cols=36 Identities=28% Similarity=0.711 Sum_probs=30.5
Q ss_pred CCCccCCCC-CCCCceEeccceeEehhhhhhhccCCC
Q 012423 16 NKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGV 51 (464)
Q Consensus 16 Nk~CaDCGA-~nPqWASv~~GIFICleCSGiHR~LGv 51 (464)
-+.|..|+. .-|.|-.-.-|..||-.|.-.+|..|+
T Consensus 2 ~r~C~~Cgtt~Tp~WR~gp~G~~LCNACGl~~r~~G~ 38 (39)
T d1y0ja1 2 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 38 (39)
T ss_dssp CCCCSSSCCCCCSCCEECTTSCEECSSHHHHHHHSCC
T ss_pred cCCCCCCCCCCCcccccCCCCCEeeHHhHHHHHHhCC
Confidence 368999998 579999988899999999888887664
No 4
>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}
Probab=67.35 E-value=1.5 Score=30.27 Aligned_cols=40 Identities=25% Similarity=0.570 Sum_probs=32.2
Q ss_pred CccCCCC-CCCCceEeccceeEehhhhhhhccCCCcccceeeccc
Q 012423 18 ICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTM 61 (464)
Q Consensus 18 ~CaDCGA-~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtm 61 (464)
.|..|+. .-|.|---.-|-.||-.|.-.+|..|++ |.++|
T Consensus 2 ~C~nC~tt~Tp~WRr~~~G~~lCNACGl~~k~~g~~----RP~sl 42 (42)
T d2vuti1 2 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVV----RPLSL 42 (42)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSC----CCCCC
T ss_pred cCCCCCCCCCccceeCCCCCCchhhhhHHHHHcCCC----CCCCC
Confidence 5999997 5789999999999999998877766654 55544
No 5
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=63.63 E-value=1.9 Score=32.30 Aligned_cols=36 Identities=19% Similarity=0.483 Sum_probs=30.3
Q ss_pred CCccCCCC-CCCCceEeccceeEehhhhhhhccCCCc
Q 012423 17 KICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (464)
Q Consensus 17 k~CaDCGA-~nPqWASv~~GIFICleCSGiHR~LGvH 52 (464)
..|+.|+. .-|.|=--..|-+||-.|.-.++..+++
T Consensus 5 ~~C~nCgt~~Tp~WRr~~~G~~lCNACGl~~~~~~~~ 41 (66)
T d3gata_ 5 TVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVN 41 (66)
T ss_dssp CCCTTTCCCCCSSEEECTTSCEEEHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCCcccccCCCCCcccchhHHHHHHhCCc
Confidence 46999998 5789999999999999998777776653
No 6
>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.86 E-value=5.6 Score=25.49 Aligned_cols=30 Identities=30% Similarity=0.672 Sum_probs=24.6
Q ss_pred CccCCCCCCCCceEeccceeEehhhhhhhccCC
Q 012423 18 ICVDCAQKNPQWASVSYGVFMCLECSGKHRGLG 50 (464)
Q Consensus 18 ~CaDCGA~nPqWASv~~GIFICleCSGiHR~LG 50 (464)
.|+.||..-+.=|----|-+-|+.| |-.+|
T Consensus 1 nC~~CgkeltadArEl~geLyCLpC---hdKmG 30 (31)
T d2cora1 1 NCANCGKELTADARELKGELYCLPC---HDKMG 30 (31)
T ss_dssp BCSSSCCBCCTTCEEETTEEECHHH---HHTTS
T ss_pred CccccccccchhHHHhcCCEEEEec---ccccC
Confidence 3999999888888888899999999 55554
No 7
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.87 E-value=2.6 Score=28.13 Aligned_cols=30 Identities=17% Similarity=0.490 Sum_probs=24.6
Q ss_pred CCCCCccCCCCC-CCCceEeccceeEehhhh
Q 012423 14 PGNKICVDCAQK-NPQWASVSYGVFMCLECS 43 (464)
Q Consensus 14 pgNk~CaDCGA~-nPqWASv~~GIFICleCS 43 (464)
+.-..|-|||.+ .-.|.+.+|+--+|..|.
T Consensus 3 ~dy~~C~eCg~~F~DSYL~~~Fd~~vCD~CR 33 (36)
T d1d4ua2 3 FDYVICEECGKEFMDSYLMDHFDLPTCDDCR 33 (36)
T ss_dssp CCCEECTTTCCEESCSSSTTTTSCCCCTTTC
T ss_pred ccHHHHHHhCcHHHHHHHHHcCCchhccccc
Confidence 344679999984 566999999999999994
No 8
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=42.20 E-value=7.1 Score=27.28 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=22.2
Q ss_pred CCCCccCCCCCCCCceEeccceeEehhhhhh
Q 012423 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (464)
Q Consensus 15 gNk~CaDCGA~nPqWASv~~GIFICleCSGi 45 (464)
...+|.+|++.+- =....-|-.||..|--|
T Consensus 4 ~~~~Cp~Cgs~~i-v~D~~~Ge~vC~~CG~V 33 (50)
T d1pfta_ 4 KQKVCPACESAEL-IYDPERGEIVCAKCGYV 33 (50)
T ss_dssp SCCSCTTTSCCCE-EEETTTTEEEESSSCCB
T ss_pred ccccCcCCCCCcE-EEECCCCeEecccCCcE
Confidence 4678999998652 12346699999999764
No 9
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human and chicken (Homo sapiens) and (Gallus gallus) [TaxId: 9606]}
Probab=40.51 E-value=8.7 Score=28.79 Aligned_cols=31 Identities=23% Similarity=0.627 Sum_probs=26.0
Q ss_pred CCCCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 14 pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
.+.+.|.-|+.+.- ...||++.|..|+.+=|
T Consensus 2 ~~~~~C~VCg~~a~---g~hyGv~sC~aC~~FFR 32 (74)
T d1hcqa_ 2 KETRYCAVCNDYAS---GYHYGVWSCEGCKAFFK 32 (74)
T ss_dssp CCCCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCCccCCCcCC---ceEcCeeehHHHHHHHH
Confidence 46788999998643 78999999999998755
No 10
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.60 E-value=9.4 Score=26.98 Aligned_cols=14 Identities=29% Similarity=0.549 Sum_probs=12.2
Q ss_pred cCCCCHHHHHHHHh
Q 012423 61 MDSWSEIQIKKMEA 74 (464)
Q Consensus 61 mD~Ws~~eL~~Mk~ 74 (464)
||.|+++|+.+|..
T Consensus 1 ~d~WT~eE~~~F~~ 14 (57)
T d2crga1 1 MEEWSASEACLFEE 14 (57)
T ss_dssp SCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 79999999999864
No 11
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta) DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.28 E-value=8.3 Score=30.55 Aligned_cols=29 Identities=31% Similarity=0.779 Sum_probs=24.0
Q ss_pred CCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 16 NKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 16 Nk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
++.|.-||.+.. ...||++.|..|+++=|
T Consensus 1 ~~~C~VCg~~a~---g~HfGv~sC~aCkaFFR 29 (103)
T d2nllb_ 1 DELCVVCGDKAT---GYHYRCITCEGCKGFFR 29 (103)
T ss_dssp CCBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCcCccCCCcCC---cccCchhhhHHHHHHhH
Confidence 468999998743 58999999999998654
No 12
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=31.54 E-value=9.8 Score=28.87 Aligned_cols=40 Identities=23% Similarity=0.478 Sum_probs=28.7
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeEehhhhh
Q 012423 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (464)
Q Consensus 3 a~r~L~~L-~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSG 44 (464)
.|+++.+| .++...-.|.-|+..... -+..|||.|..|.-
T Consensus 13 lRk~v~kie~~q~~ky~Cp~Cgk~~vk--R~a~GIW~C~kC~~ 53 (73)
T d1jj2y_ 13 IRVRVADVEIKHKKKHKCPVCGFKKLK--RAGTGIWMCGHCGY 53 (73)
T ss_dssp HHHHHHHHHHHHHSCBCCSSSCCSCEE--EEETTEEEETTTCC
T ss_pred HHHHHHHHHHHhcCCccCCCCCCCceE--EEEEEEEECCCCCC
Confidence 45556665 455567899999986554 45679999999953
No 13
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=29.35 E-value=11 Score=28.58 Aligned_cols=40 Identities=18% Similarity=0.551 Sum_probs=28.4
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeEehhhhh
Q 012423 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (464)
Q Consensus 3 a~r~L~~L-~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSG 44 (464)
.|+++.+| ..+..--.|.-|+..... -+..|||.|..|.-
T Consensus 13 lRk~v~~ie~~q~~ky~Cp~Cgk~~vk--R~a~GIW~C~kC~~ 53 (73)
T d1vqoz1 13 SRRRVAEIESEMNEDHACPNCGEDRVD--RQGTGIWQCSYCDY 53 (73)
T ss_dssp HHHHHHHHHHHHHSCBCCSSSSCSCEE--EEETTEEEETTTCC
T ss_pred HHHHHHHHHHHHhCCccCCCCCCceeE--EEEEEEEECCCCCC
Confidence 35555555 445566799999986554 45679999999953
No 14
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.42 E-value=13 Score=26.77 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=22.9
Q ss_pred CCCCCccCCCCCCCCceEeccceeEehhhhhh
Q 012423 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (464)
Q Consensus 14 pgNk~CaDCGA~nPqWASv~~GIFICleCSGi 45 (464)
...-+|.+|+.++-. ....-|-.||.+|--|
T Consensus 9 ~~~~~Cp~Cgs~~ii-~D~~~Ge~vC~~CG~V 39 (58)
T d1dl6a_ 9 LPRVTCPNHPDAILV-EDYRAGDMICPECGLV 39 (58)
T ss_dssp CSCCSBTTBSSSCCE-ECSSSCCEECTTTCCE
T ss_pred ccccCCCCCCCCCEE-EECCCCcEecccCCCE
Confidence 345689999987531 1356799999999765
No 15
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.07 E-value=9.5 Score=29.63 Aligned_cols=29 Identities=24% Similarity=0.700 Sum_probs=24.7
Q ss_pred CCCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 16 NKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 16 Nk~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
++.|.-||.+.- ...||++.|..|+.+=|
T Consensus 4 ~~~C~VCg~~~~---~~hyG~~sC~aC~~FFR 32 (90)
T d1lo1a_ 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFK 32 (90)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHH
T ss_pred CCcCCcCCCcCC---ceEcCeeechhhHHHHH
Confidence 488999998754 67999999999998765
No 16
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.04 E-value=13 Score=28.73 Aligned_cols=28 Identities=25% Similarity=0.735 Sum_probs=23.1
Q ss_pred CCccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 17 KICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 17 k~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
++|.-||.+.- ...|||..|..|+.+-|
T Consensus 1 r~C~VCg~~a~---g~hyGv~sC~aC~~FFR 28 (89)
T d1kb2a_ 1 RICGVCGDRAT---GFHFNAMTCEGCKGFFR 28 (89)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCeeCCCcCC---ccCCCHHHHHHHHHHHH
Confidence 57999997654 47999999999998655
No 17
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.50 E-value=20 Score=28.81 Aligned_cols=26 Identities=23% Similarity=0.744 Sum_probs=17.6
Q ss_pred CCCCCccCCCCCCCCceEeccceeEe
Q 012423 14 PGNKICVDCAQKNPQWASVSYGVFMC 39 (464)
Q Consensus 14 pgNk~CaDCGA~nPqWASv~~GIFIC 39 (464)
|..-.|.+|+....-|+++.-|-+-|
T Consensus 22 p~~~~C~~C~~~~~lWlCL~CG~vgC 47 (113)
T d2g45a1 22 PCGWKCSKCDMRENLWLNLTDGSILC 47 (113)
T ss_dssp CCBCCCSSSSCCSSEEEETTTCCEEE
T ss_pred CCCCcccCCCCcCCEEEEecCCCCcc
Confidence 45568999998877665555554444
No 18
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.57 E-value=21 Score=26.72 Aligned_cols=27 Identities=33% Similarity=0.837 Sum_probs=22.6
Q ss_pred CccCCCCCCCCceEeccceeEehhhhhhhc
Q 012423 18 ICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (464)
Q Consensus 18 ~CaDCGA~nPqWASv~~GIFICleCSGiHR 47 (464)
+|.-|+.+.- ...||++.|..|+.+=|
T Consensus 2 iC~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (78)
T d1a6ya_ 2 LCKVCGDVAS---GFHYGVLACEGCKGFFR 28 (78)
T ss_dssp BCTTTSSBCC---EEETTEEECHHHHHHHH
T ss_pred CCeeCCCcCC---cccCcchhhhhchhhhh
Confidence 6888997754 67999999999999755
No 19
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=20.34 E-value=9.3 Score=30.36 Aligned_cols=26 Identities=23% Similarity=0.769 Sum_probs=21.2
Q ss_pred CCCCCccCCCCCCCCceEeccceeEehhhh
Q 012423 14 PGNKICVDCAQKNPQWASVSYGVFMCLECS 43 (464)
Q Consensus 14 pgNk~CaDCGA~nPqWASv~~GIFICleCS 43 (464)
|....|.+|.....-|+. +++||.|.
T Consensus 16 p~~~~C~~C~~~~~~W~~----L~lCL~CG 41 (102)
T d2idaa1 16 PSALGCEECLKIGSPWVH----LRICRTCG 41 (102)
T ss_dssp CSSSSCHHHHTTTCCCSC----BEEESSSC
T ss_pred CCCCCcccccCCCCcccc----cccccccC
Confidence 456789999999888865 78899884
Done!