Query 012425
Match_columns 464
No_of_seqs 167 out of 234
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:12:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb7_A Telomere-binding protei 100.0 1.8E-80 6.2E-85 653.0 33.1 383 5-463 33-494 (495)
2 1xjv_A Protection of telomeres 100.0 1.1E-59 3.6E-64 468.9 30.5 273 6-300 2-288 (294)
3 1qzg_A Protection of telomeres 100.0 1.3E-32 4.4E-37 252.2 17.6 142 6-148 25-175 (187)
4 4hik_A Protection of telomeres 100.0 2.1E-32 7.1E-37 241.6 14.3 129 153-301 2-142 (143)
5 4gop_C Putative uncharacterize 99.1 5E-09 1.7E-13 109.5 22.8 327 10-409 3-379 (444)
6 1jmc_A Protein (replication pr 98.4 1.5E-05 5.1E-10 76.3 19.1 223 7-300 5-240 (246)
7 2k50_A Replication factor A re 98.4 1E-06 3.5E-11 74.6 8.4 92 6-103 3-99 (115)
8 2k75_A Uncharacterized protein 98.2 5E-06 1.7E-10 69.6 8.9 84 8-103 1-87 (106)
9 4gop_C Putative uncharacterize 98.1 1E-05 3.4E-10 84.4 10.1 91 3-95 114-212 (444)
10 1o7i_A SSB, SSO2364, single st 98.0 3.4E-05 1.2E-09 65.7 11.0 85 10-103 2-90 (119)
11 1jmc_A Protein (replication pr 98.0 2.1E-05 7E-10 75.3 10.6 93 3-100 119-217 (246)
12 2kbn_A Conserved protein; nucl 97.6 0.00044 1.5E-08 57.9 11.2 84 10-103 5-88 (109)
13 2k75_A Uncharacterized protein 97.6 0.0012 4.2E-08 54.9 12.6 96 155-290 2-98 (106)
14 3dm3_A Replication factor A; p 97.5 0.00032 1.1E-08 58.4 8.6 84 9-101 4-92 (105)
15 2k50_A Replication factor A re 97.3 0.0013 4.5E-08 55.2 10.1 92 155-287 6-107 (115)
16 3e0e_A Replication protein A; 97.3 0.00095 3.2E-08 54.6 8.9 82 11-101 3-88 (97)
17 1o7i_A SSB, SSO2364, single st 97.3 0.0024 8.1E-08 54.1 11.4 94 156-287 2-98 (119)
18 2kbn_A Conserved protein; nucl 97.2 0.0069 2.3E-07 50.5 13.2 93 155-288 4-97 (109)
19 1wjj_A Hypothetical protein F2 97.1 0.0083 2.8E-07 52.7 12.8 99 155-287 15-122 (145)
20 1wjj_A Hypothetical protein F2 97.0 0.0018 6.2E-08 56.9 8.0 89 6-103 12-114 (145)
21 3dm3_A Replication factor A; p 96.7 0.012 4.1E-07 48.8 10.1 97 154-285 3-100 (105)
22 1ynx_A Replication factor-A pr 96.1 0.069 2.4E-06 44.7 11.6 102 155-288 3-112 (114)
23 3e0e_A Replication protein A; 95.6 0.033 1.1E-06 45.3 7.2 91 158-283 4-94 (97)
24 1xjv_A Protection of telomeres 94.9 0.23 7.8E-06 48.5 12.2 85 155-279 5-95 (294)
25 1ynx_A Replication factor-A pr 94.3 0.065 2.2E-06 44.8 5.9 64 331-399 3-67 (114)
26 1qzg_A Protection of telomeres 92.7 0.92 3.1E-05 41.2 10.9 85 159-279 36-128 (187)
27 1miu_A BRCA2, breast cancer ty 91.8 1.3 4.4E-05 48.2 12.5 153 44-268 511-671 (738)
28 4gop_B Putative uncharacterize 91.2 1.6 5.4E-05 37.3 10.4 68 22-100 37-108 (136)
29 3ebe_A Protein MCM10 homolog; 91.0 0.25 8.5E-06 45.5 5.3 82 7-90 35-123 (200)
30 3u4z_A Telomerase-associated p 90.2 2.8 9.4E-05 32.5 9.5 83 12-102 3-86 (109)
31 3kdf_D Replication protein A 3 89.9 2.7 9.4E-05 35.6 10.7 68 22-99 32-102 (132)
32 4hik_A Protection of telomeres 89.3 0.61 2.1E-05 40.6 6.0 76 9-93 4-100 (143)
33 1jb7_A Telomere-binding protei 88.9 2.4 8.3E-05 44.3 11.4 104 155-287 37-151 (495)
34 1l1o_C Replication protein A 7 86.8 0.6 2.1E-05 42.2 4.6 28 372-399 79-106 (181)
35 2pi2_A Replication protein A 3 84.7 6 0.0002 37.8 10.8 68 22-99 72-142 (270)
36 3u58_A Tetrahymena TEB1 AB; te 83.3 9.8 0.00033 32.5 10.1 83 11-101 120-203 (213)
37 3u50_C Telomerase-associated p 82.3 0.49 1.7E-05 42.5 1.8 29 372-400 75-103 (172)
38 3mxn_A RECQ-mediated genome in 64.4 6.1 0.00021 34.7 4.1 67 329-399 20-87 (157)
39 3r8s_P 50S ribosomal protein L 56.1 22 0.00075 29.5 5.8 40 70-110 14-61 (114)
40 3v2d_T 50S ribosomal protein L 53.2 22 0.00077 30.6 5.6 39 70-109 17-63 (146)
41 3kf6_A Protein STN1; OB fold, 49.1 31 0.0011 30.2 6.1 70 22-100 48-120 (159)
42 2ftc_K 39S ribosomal protein L 48.1 27 0.00091 28.1 5.0 39 72-111 1-46 (98)
43 1miu_A BRCA2, breast cancer ty 45.5 48 0.0016 36.1 8.0 72 11-93 597-672 (738)
44 3f2b_A DNA-directed DNA polyme 41.9 57 0.002 37.1 8.3 40 156-195 7-51 (1041)
45 4gop_B Putative uncharacterize 39.4 24 0.00083 29.7 3.8 21 373-393 54-74 (136)
46 3koj_A Uncharacterized protein 38.1 39 0.0013 27.5 4.7 24 235-258 54-77 (108)
47 2zjr_M 50S ribosomal protein L 35.6 28 0.00095 30.7 3.5 40 70-110 22-69 (166)
48 2pi2_A Replication protein A 3 35.0 2.8E+02 0.0097 25.8 13.4 28 166-194 72-99 (270)
49 3f2b_A DNA-directed DNA polyme 33.8 44 0.0015 38.0 5.7 84 9-98 6-93 (1041)
50 2hpi_A DNA polymerase III alph 29.8 30 0.001 40.0 3.5 76 11-91 1027-1107(1220)
51 3vdy_A SSB, single-stranded DN 29.4 56 0.0019 26.6 4.3 27 234-260 50-76 (116)
52 3mxn_A RECQ-mediated genome in 28.0 19 0.00066 31.5 1.2 54 2-55 17-71 (157)
53 3kdf_D Replication protein A 3 27.7 2.5E+02 0.0087 23.0 13.4 28 166-194 32-59 (132)
54 1qvc_A Single stranded DNA bin 25.1 79 0.0027 26.9 4.7 27 234-260 53-79 (145)
55 2vw9_A Single-stranded DNA bin 24.6 74 0.0025 26.7 4.3 26 235-260 50-75 (134)
56 1z9f_A Single-strand binding p 24.3 74 0.0025 27.5 4.3 27 234-260 63-89 (153)
57 3ulp_A Single-strand binding p 23.7 93 0.0032 25.6 4.7 27 234-260 54-81 (124)
58 3k8a_A Putative primosomal rep 23.5 1E+02 0.0034 24.7 4.7 75 22-99 8-92 (103)
59 3afp_A Single-stranded DNA-bin 22.2 83 0.0028 27.5 4.3 28 234-261 53-80 (168)
60 3tqy_A Single-stranded DNA-bin 22.1 97 0.0033 26.8 4.7 26 235-260 57-82 (158)
61 1qvc_A Single stranded DNA bin 21.9 1.4E+02 0.0047 25.3 5.6 71 23-94 7-90 (145)
62 3en2_A Probable primosomal rep 21.2 1.5E+02 0.005 23.7 5.2 72 23-95 4-85 (101)
63 4dam_A Single-stranded DNA-bin 21.0 98 0.0033 25.8 4.3 26 234-259 63-88 (128)
64 1txy_A Primosomal replication 20.0 1.5E+02 0.005 23.5 5.0 23 236-258 50-72 (104)
No 1
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=100.00 E-value=1.8e-80 Score=653.04 Aligned_cols=383 Identities=20% Similarity=0.311 Sum_probs=329.4
Q ss_pred CCceeeEehHHHhhccCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCC-----CCCe-----EEEEeccCcCCCCC
Q 012425 5 GEDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHT-----KDGI-----SVNIFAESMEKLPY 74 (464)
Q Consensus 5 ~~~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~-----~~gl-----~v~iF~~~~e~LP~ 74 (464)
.+.|+|++|++|....++.|||||||+|+++|++|+|+||+|||+|+|+|+. +.|| +|+||+++.++||.
T Consensus 33 ~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~LP~ 112 (495)
T 1jb7_A 33 GHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPI 112 (495)
T ss_dssp ---CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGSCC
T ss_pred cCCCccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHCCC
Confidence 5679999999998778999999999999999999999999999999999998 2489 99999999999999
Q ss_pred CCCCCCEEEEeeEEEEEECCeeEEeecCCc-eeEEEEeCCC------------CCCccccccC-CCcccChhHHHHHHHH
Q 012425 75 IVSVGDIILLSHVVMKAHNKQAYALFNKKF-SSFALYDGKG------------GEDFLPYQVS-SRFFVRDQDKRIIAAV 140 (464)
Q Consensus 75 v~~~GDII~l~rvkv~~~~g~~~~~~~~~~-ss~~lf~g~~------------~~~~~P~~~s-~~~~~~~~e~~~v~~L 140 (464)
|.++||||+|||++|+.|+|++++++++.+ ||||||++.. +.++.||+.| .+|+++++|++++..|
T Consensus 113 V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~~L 192 (495)
T 1jb7_A 113 IHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNL 192 (495)
T ss_dssp CCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHHHH
T ss_pred CCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHHHH
Confidence 977999999999999999999999999776 8999999977 6778999988 7799999999999999
Q ss_pred HHHHhhcccc---cCCccccccc-cCCCCCeEeEEEEEeEEEeeCCCeEEEEEEeCCCCCCCcccccccccccCCCCCcc
Q 012425 141 RKWLLNFQFK---EDSKKFLLLR-EIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQV 216 (464)
Q Consensus 141 r~w~~~~~~~---~~~~~f~~L~-di~~~~f~Dl~~qVv~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~ 216 (464)
|+|+.++.+. .++.+|++|+ ||++++||||+||||++++.++++++|||||||++|+++
T Consensus 193 R~W~~~~~~~~~~~~~~~f~~L~~di~~~~f~DLv~qVv~~~~~d~~~~~L~VwDgT~~~~~~----------------- 255 (495)
T 1jb7_A 193 RKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYTNELKLKDASGQVFYT----------------- 255 (495)
T ss_dssp HHHHHHHHHHSCSSCGGGSCCGGGGGGCSSCEEEEEEEEEEEECSSSEEEEEEEETTCCEEEE-----------------
T ss_pred HHHHHhcccccccccccchhhhhhhhccCCceeEEEEEeEEeccCCCeEEEEEEeCCCCCcce-----------------
Confidence 9999887653 3567899999 999999999999999999988899999999999998864
Q ss_pred cCCCCcccccccCCCc--ccEEEEEEccchhHHH-hhccCCCCEEEEeceEEEEeCcEEEEEEecccceE------EcCC
Q 012425 217 EPLPLSRDILCSFPAV--GSILRVIIDKGIEKHI-LHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLR------YVPT 287 (464)
Q Consensus 217 e~~~l~~~~l~~~p~~--G~~l~V~~~~~~~~~~-~~~lk~G~wV~l~Nv~~k~~~G~leG~l~~~ski~------~l~~ 287 (464)
.+++|++|.. |++++|..++..++.+ .+.++.|+| +|+. ++..+++++ ++++
T Consensus 256 ------~~~~~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w---~ni~----------~~~~~sk~~ke~~~~~l~~ 316 (495)
T 1jb7_A 256 ------LSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHY---SNII----------TFIQSSKLAKELRAKIQDD 316 (495)
T ss_dssp ------EEETTTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEE---EEEE----------EECTTCHHHHHHHHHSCCC
T ss_pred ------eeccccCCceeeEEEEEEecCccchhhhhhhhhccccc---ccee----------EEcccchhhhhhhhcccch
Confidence 3456889999 9999999886655443 578999999 6776 455567776 7766
Q ss_pred CChHHHHHHHHHHHHhhccCCCCCcccCCCCCccccCC--CCCCCCcccHHhhhcC----cccCce--eEEEEEEEeecC
Q 012425 288 NDNLIVERQRSYDERLSWEHSRMPYWCFPWTSEVTDID--YSEDGPFVTLKDVLTH----SQVTAK--FKCVVRVVAALP 359 (464)
Q Consensus 288 ~d~~v~~r~r~y~~r~~~~~~~~~~~~~p~~~~it~~~--~~~~~p~~Tl~diLt~----~~v~~k--fr~~VRVV~~~P 359 (464)
+ +.++. + +|+++.++++.+|+++ |+ ++|++||||||++ +++++| |||.||||+|||
T Consensus 317 ~---~~~~~-----~-------~~~~~~~~~~~lT~~~~~~~-~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~~~P 380 (495)
T 1jb7_A 317 H---SVEVA-----S-------LKKNVSLNAVVLTEVDKKHA-ALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTKIEP 380 (495)
T ss_dssp C---HHHHH-----H-------TTSSSCSSCEECEEECGGGT-TSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEEEES
T ss_pred h---hhhhh-----h-------cccccCCCCCcCCeecccCC-CCCcEEHHHHhcCcccCccccccccEEEEEEEEEecC
Confidence 5 33321 1 4666767778888888 99 9999999999977 889898 999999999999
Q ss_pred CCccccc-----------cCCc-------cEEEEEEEecCC-------ceEEEEEecCchhhhcCCCC---------chH
Q 012425 360 WRSEDFC-----------SPLG-------NYRIRLTLEDPT-------ARIHAFVYAEDGEKLFGGYP---------FVD 405 (464)
Q Consensus 360 ~~~edf~-----------~~~g-------~~~~~l~leD~t-------~~l~~~v~~~da~~f~~~~~---------~~~ 405 (464)
+++|||| ++.| .|+|+|+|||+| +||+|||+|+||++||+ +. .+.
T Consensus 381 ~~i~df~~~~~~~~~~~~s~~g~~~~~~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~-l~a~nL~~n~~~~~ 459 (495)
T 1jb7_A 381 SDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFN-VKADNLHKNADARK 459 (495)
T ss_dssp SSGGGGEEEEETTTTEEECSTTCGGGCEEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTS-SCCCCTTTCHHHHH
T ss_pred CCHHHhhhhhccccccccccccccCCCCceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecC-CChHhhhcCHHHHH
Confidence 9999999 4456 699999999999 99999999999999998 42 268
Q ss_pred HHHHHHHHHhcCCCCCCccccCCCCCCcceeEeEEeeeeCCCCcceeeEEEeeeeeEC
Q 012425 406 VLKRKINKLLGVAVSDGQEIKDAPRNPPWVQCCLKSYYIDRNDIWGSRQYRIFDTKIS 463 (464)
Q Consensus 406 ~l~~kl~~l~g~~e~~~~~~~~~~~~~pw~~cci~sY~~~~~~~~~~r~y~iF~T~i~ 463 (464)
.|++||..|.- ..+ ||+|||+. ....|+||+|+|.
T Consensus 460 ~L~e~~~~l~~------------~~~--~~d~~~~~---------~~~~y~~~~t~~~ 494 (495)
T 1jb7_A 460 KLEDSAELLTK------------FNS--YVDAVVER---------RNGFYLIKDTKLI 494 (495)
T ss_dssp HHHHHHHHHHS------------TTE--EEEEEEEE---------ETTEEEEESEEEC
T ss_pred HHHHHHHHhcc------------CCc--eEEEEEEe---------ecceEEeeeeeec
Confidence 99999997653 122 99999933 4778999999985
No 2
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=100.00 E-value=1.1e-59 Score=468.92 Aligned_cols=273 Identities=19% Similarity=0.320 Sum_probs=238.8
Q ss_pred CceeeEehHHHhhccCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCCCEEEEe
Q 012425 6 EDYRFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLS 85 (464)
Q Consensus 6 ~~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~ 85 (464)
++|+|++|+++. .++.|||||||+|+++|++|+|+||+|||+|+|+|. .||+|+||+++.++||.+.++||||+||
T Consensus 2 ~~y~y~~l~~l~--~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~--~gl~v~iF~~~~~~LP~v~~~GDII~l~ 77 (294)
T 1xjv_A 2 TNYIYTPLNQLK--GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN--VKLTCLLFSGNYEALPIIYKNGDIVRFH 77 (294)
T ss_dssp CCCCCCCGGGCC--SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC--CEEEEEEEESSGGGSCCCCSTTCEEEEE
T ss_pred CcceEEEHHHhh--CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC--CCEEEEEECCChHHCCCCCCCCCEEEEE
Confidence 679999999884 588999999999999999999999999999999997 4699999999999999997799999999
Q ss_pred eEEEEEECCeeEEeecCCceeEEEEeCCCCCCccccccCCCcccChhHHHHHHHHHHHHhhcccccCCccccccccCCCC
Q 012425 86 HVVMKAHNKQAYALFNKKFSSFALYDGKGGEDFLPYQVSSRFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREIKDG 165 (464)
Q Consensus 86 rvkv~~~~g~~~~~~~~~~ss~~lf~g~~~~~~~P~~~s~~~~~~~~e~~~v~~Lr~w~~~~~~~~~~~~f~~L~di~~~ 165 (464)
|++|+.|+|+++++++.+++ |++|+|..+.++.|++++.+|+++++|++++..||+|+.++++. +.+|++|+||+++
T Consensus 78 ~vki~~~~g~~~~v~~~~~s-~~~f~g~~~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~~~--~~~~~~L~di~~~ 154 (294)
T 1xjv_A 78 RLKIQVYKKETQGITSSGFA-SLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMSP--SWTLLKLCDVQPM 154 (294)
T ss_dssp EEEEEEETTEEEEEEEEEEE-EEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHCC-----CCCCGGGCCSS
T ss_pred EEEEEEECCeEEEEccCCeE-EEEECCCCCCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhccCC--CCceeEHHHcccC
Confidence 99999999999999987755 44899988888899999999999999999999999999887653 4579999999999
Q ss_pred CeEeEEEEEeEEEeeCCCeEEEEEEeCCCCCCCcccccccccccCCCCCcccCCC-CcccccccCCCcc-cEEEEEEccc
Q 012425 166 QRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLP-LSRDILCSFPAVG-SILRVIIDKG 243 (464)
Q Consensus 166 ~f~Dl~~qVv~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~-l~~~~l~~~p~~G-~~l~V~~~~~ 243 (464)
+||||+||||++++.++++++|||||||+||+++++...++++ .+++. .+.+ .| .+++|++|++
T Consensus 155 ~f~DLv~qVv~v~~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~-------~~gd~~~~~~-------~~~lt~~V~~~d~ 220 (294)
T 1xjv_A 155 QYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLIQDLV-------LEGDLSHIHR-------LQNLTIDILVYDN 220 (294)
T ss_dssp CEEEEEEEEEEEEECSSSEEEEEEECSSCCSSCBCCCCCCSSC-------CEECHHHHHH-------HGGGSEEEEEETT
T ss_pred CeeeEEEEEEEEEecCCCeEEEEEECCCCCCCCcccccccccc-------ccCccccccc-------ccCeeEEEEEEcc
Confidence 9999999999999988999999999999999998887654321 11110 1111 23 4789999999
Q ss_pred hhHHHhhccCCCCEEEEeceEEEEe--------CcEEEEEEeccc----ceEEcCCCChHHHHHHHHHH
Q 012425 244 IEKHILHLLKIGKWVKLQNVLCQVD--------AGLWFGVLTHFT----RLRYVPTNDNLIVERQRSYD 300 (464)
Q Consensus 244 ~~~~~~~~lk~G~wV~l~Nv~~k~~--------~G~leG~l~~~s----ki~~l~~~d~~v~~r~r~y~ 300 (464)
|+.+++ .+|+||||+|+||++|++ +|.|||.||+++ +|++|+++++.++++++..+
T Consensus 221 h~~~~~-~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~~~~~~~~i~~l~~~~~~~~~~~~~~~ 288 (294)
T 1xjv_A 221 HVHVAR-SLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLE 288 (294)
T ss_dssp HHHHHH-HCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHHHHH
T ss_pred hhHHHh-cCCCCcEEEEeeeEEEecccccccCCCcceEEEEecCcccCcEeEEecCCCCCHHHHHHHHh
Confidence 998765 899999999999999997 789999999986 69999999999998888765
No 3
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=100.00 E-value=1.3e-32 Score=252.17 Aligned_cols=142 Identities=20% Similarity=0.356 Sum_probs=124.2
Q ss_pred CceeeEehHHHhh--ccCCeEEEEEEEEeeCCcccc-cCC-ceEEEEEEEeCCCC--CCCeEEEEeccCcCCCCCCCCCC
Q 012425 6 EDYRFLKIKDAIL--SINQKVSFVGVILEVGSPKQS-KGT-DSFCTIKVTDESHT--KDGISVNIFAESMEKLPYIVSVG 79 (464)
Q Consensus 6 ~~y~y~~i~d~~~--~~~~~vnviGVVvd~~~P~~t-rGt-D~~~tl~I~D~S~~--~~gl~v~iF~~~~e~LP~v~~~G 79 (464)
..|+|++|++++. ..++.||+||||+|+++|++| +|+ ||+|||+|+|+|++ +.||+|+||+++.++||.|.++|
T Consensus 25 ~~~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~G 104 (187)
T 1qzg_A 25 GELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVG 104 (187)
T ss_dssp TTEEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTT
T ss_pred cceeEEEHHHHHhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCC
Confidence 4689999999985 357889999999999999999 999 99999999999965 67999999999999999998899
Q ss_pred CEEEEeeEEEEEECCeeEEeecCCceeEEEEeCCCCC---CccccccCCCcccChhHHHHHHHHHHHHhhcc
Q 012425 80 DIILLSHVVMKAHNKQAYALFNKKFSSFALYDGKGGE---DFLPYQVSSRFFVRDQDKRIIAAVRKWLLNFQ 148 (464)
Q Consensus 80 DII~l~rvkv~~~~g~~~~~~~~~~ss~~lf~g~~~~---~~~P~~~s~~~~~~~~e~~~v~~Lr~w~~~~~ 148 (464)
|||+|||+|||.|+|++++++++.+ +|++|++..+. +..|+.+.+++.++++|++|+..||+||..+.
T Consensus 105 DIIlL~rvkiq~~~g~~~~v~~~~~-s~a~f~~~~~~~~~~~~~~~~p~~~~~~~~E~~ya~~L~~~w~~~~ 175 (187)
T 1qzg_A 105 QPLLLHQITLRSYRDRTQGLSKDQF-RYALWPDFSSNSKDTLCPQPMPRLMKTGDKEEQFALLLNKIWDEQT 175 (187)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEE-EEEECCCTTCSCSCCSCCCCSTTBCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEEECCeEEEEEcCce-eEEEEeccCCCCCCCCCCccCccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875 79999986543 33344445568999999999999998876643
No 4
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=99.98 E-value=2.1e-32 Score=241.57 Aligned_cols=129 Identities=22% Similarity=0.247 Sum_probs=108.7
Q ss_pred CccccccccCCCCCeEeEEEEEeEEEeeCCCeEEEEEEeCCCCCCCcccccccccccCCCCCcccCCCCcccccccCC-C
Q 012425 153 SKKFLLLREIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFP-A 231 (464)
Q Consensus 153 ~~~f~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l~~~p-~ 231 (464)
+.||++|+||++++||||+||||+++..+ ++++|||||||.||.++.+....+ + ..|+ +
T Consensus 2 ~~kf~llkdv~~~~F~Dl~~qVv~~~~~~-~~~~LyVTDYT~N~~~~~~~~~~~---------------~----~~W~Gp 61 (143)
T 4hik_A 2 SDSFSLLSQITPHQRCSFYAQVIKTWYSD-KNFTLYVTDYTENELFFPMSPYTS---------------S----SRWRGP 61 (143)
T ss_dssp --CCCCGGGCCSSCEEEEEEEEEEEEECS-SCEEEEEECSCCCTTSCCBCTTCT---------------T----CSCCCC
T ss_pred CchhhhHHhCCCCCeEEEEEEEEEEEcCC-CeEEEEEecCCCCCcccccccCCC---------------C----ccccCC
Confidence 45899999999999999999999998855 999999999999999864332111 0 1355 6
Q ss_pred cc-cEEEEEEccchhHHHhhccCCCCEEEEeceEEEEe-CcEEEEEEeccc------ceEEcCCCCh---HHHHHHHHHH
Q 012425 232 VG-SILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVD-AGLWFGVLTHFT------RLRYVPTNDN---LIVERQRSYD 300 (464)
Q Consensus 232 ~G-~~l~V~~~~~~~~~~~~~lk~G~wV~l~Nv~~k~~-~G~leG~l~~~s------ki~~l~~~d~---~v~~r~r~y~ 300 (464)
+| ++|||++|++|+.+|++++++||||+|+||++|++ +|.|||+||+++ .|++|+++|+ ++++|+++||
T Consensus 62 ~G~~tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~ll~Rk~~Y~ 141 (143)
T 4hik_A 62 FGRFSIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLYV 141 (143)
T ss_dssp CBSCCEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHHHHHHGGGC
T ss_pred CCcEEEEEEEECcHHHHHHhhCCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHHHHHHHHHh
Confidence 77 69999999999999999999999999999999997 889999999998 4678887777 4678999998
Q ss_pred H
Q 012425 301 E 301 (464)
Q Consensus 301 ~ 301 (464)
+
T Consensus 142 ~ 142 (143)
T 4hik_A 142 Q 142 (143)
T ss_dssp -
T ss_pred h
Confidence 5
No 5
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=99.13 E-value=5e-09 Score=109.48 Aligned_cols=327 Identities=11% Similarity=0.132 Sum_probs=191.9
Q ss_pred eEehHHHhhccCCeEEEEEEEEeeCCccc---ccCCceEEEEEEEeCCCCCCCeEEEEeccCcCCC-CCCCCCCCEEEEe
Q 012425 10 FLKIKDAILSINQKVSFVGVILEVGSPKQ---SKGTDSFCTIKVTDESHTKDGISVNIFAESMEKL-PYIVSVGDIILLS 85 (464)
Q Consensus 10 y~~i~d~~~~~~~~vnviGVVvd~~~P~~---trGtD~~~tl~I~D~S~~~~gl~v~iF~~~~e~L-P~v~~~GDII~l~ 85 (464)
+++|+++.- ......+.|-|+.....+. .+|..-..++.|.|++- .|.+.+|.+..+.+ |.++ .|+|+.|.
T Consensus 3 ~~~I~~L~p-~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l~-eG~vy~Is 77 (444)
T 4gop_C 3 IYPIEGLSP-YQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG---EIKATGFNDAVDRFYPLLQ-ENHVYLIS 77 (444)
T ss_dssp CCCSTTCCT-TCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC---EEEEEEETHHHHHHTTTCC-TTCEEEEE
T ss_pred ceeHHHCCC-CCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC---EEEEEEeHHHHHHHHHhee-cCCEEEEc
Confidence 678888862 2346999999998776542 23444678899999863 49999997754555 5566 89999999
Q ss_pred eEEEEEECCeeEEeecCCceeEEE-EeCCCCCCccccccCCCcccChhHHHHHHHHHHHHhhcccccCCccccccccC--
Q 012425 86 HVVMKAHNKQAYALFNKKFSSFAL-YDGKGGEDFLPYQVSSRFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLREI-- 162 (464)
Q Consensus 86 rvkv~~~~g~~~~~~~~~~ss~~l-f~g~~~~~~~P~~~s~~~~~~~~e~~~v~~Lr~w~~~~~~~~~~~~f~~L~di-- 162 (464)
+++|+..++..... ++. |-| |.... .+.+......+ +. ..-+|..|.||
T Consensus 78 ~~~V~~~~~~y~~~-~~~---~ei~~~~~T--~V~~~~d~~~i--------------------P~--~~~~f~~i~~i~~ 129 (444)
T 4gop_C 78 KARVNIAKKQFSNL-QNE---YEITFENST--EIEECTDATDV--------------------PE--VKYEFVRINELES 129 (444)
T ss_dssp SCEEEECCGGGCSC-CCS---EEEEECTTC--EEEECSCCSSS--------------------CC--CCCCBCCGGGGGG
T ss_pred CCEEEecCCccccC-CCC---EEEEEcCCc--EEEEccCcccC--------------------cc--eeecccCHHHHhc
Confidence 99999887654432 222 111 22211 11110000000 00 01124445555
Q ss_pred -CCCCeEeEEEEEeEEEeeCCCeEEEEEE--eCCCCCCCcccccccccccCCCCCcccCCCCcccccccCCCcccEEEEE
Q 012425 163 -KDGQRINMACKVFHICEVAKGEWMAFVW--DGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILRVI 239 (464)
Q Consensus 163 -~~~~f~Dl~~qVv~~~~~~~~~~~L~Vw--DgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l~~~p~~G~~l~V~ 239 (464)
..+..+|+++.|+.+..... + .. ||++..-..+ .+ .-.-|..++++
T Consensus 130 ~~~~~~vDViG~V~~v~~~~~----i-~~k~~g~~~~kr~i--------------~L------------~D~sg~~i~~t 178 (444)
T 4gop_C 130 VEANQQCDVIGILDSYGELSE----I-VSKASQRPVQKREL--------------TL------------VDQGNRSVKLT 178 (444)
T ss_dssp SCSSCCCBEEEEEEEECCCEE----E-CCTTTCSCEEEEEE--------------EE------------ECTTCBEEEEE
T ss_pred cCCCCceEEEEEEEEcCCcEE----E-EEccCCceeeEEEE--------------EE------------EeCCCCEEEEE
Confidence 46899999999998864211 0 11 1221111000 00 00125678999
Q ss_pred EccchhHHHh--hccCCCCEEEEeceEEEEeCcEEEEEEecccceEEcCCCChHHHHHHHHHHHHhhccCCCCCcccCCC
Q 012425 240 IDKGIEKHIL--HLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQRSYDERLSWEHSRMPYWCFPW 317 (464)
Q Consensus 240 ~~~~~~~~~~--~~lk~G~wV~l~Nv~~k~~~G~leG~l~~~ski~~l~~~d~~v~~r~r~y~~r~~~~~~~~~~~~~p~ 317 (464)
||..+|.... .....|..|.|++++++..+|. .......++| +++.+-|++.+.+.-|...-.. .+..++.+
T Consensus 179 LWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G~-~ls~~~~s~i-~inPdipea~~l~~w~~~~g~~----~~~~~~~~ 252 (444)
T 4gop_C 179 LWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGR-SLSMFSSSTM-LINPDITESHVLRGWYDNDGAH----AQFQPYTN 252 (444)
T ss_dssp EEHHHHHTSTTSTTSSSCCEEEEESCEEECTTSS-EEECCTTCEE-EESCSSHHHHHHHHHHHHHTTT----SCCBCCCC
T ss_pred EEhhhhhhhhhhhccCCCCEEEEEeEEEeecCCe-EEeccccceE-EECCCCHHHHHHHHHHHcCCCC----cccccccc
Confidence 9998876322 1277899999999999977775 4555566677 4566778887777766543211 11111100
Q ss_pred CC------ccccCCCCCCCCcccHHhhhcC----cccCceeEEEEEEEeecCCC------ccc--------------ccc
Q 012425 318 TS------EVTDIDYSEDGPFVTLKDVLTH----SQVTAKFKCVVRVVAALPWR------SED--------------FCS 367 (464)
Q Consensus 318 ~~------~it~~~~~~~~p~~Tl~diLt~----~~v~~kfr~~VRVV~~~P~~------~ed--------------f~~ 367 (464)
.. ....-... ..+..||.||+.. .+.+..|.+.+-|+..-+.+ -.+ .|.
T Consensus 253 ~~~~~~~~~~~~~~~~-~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~ 331 (444)
T 4gop_C 253 GGVGGGAMGGGGAGAN-MAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKKVNLDHENNWRCE 331 (444)
T ss_dssp CC---------CTTCC-SSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCSTTCCCBEEECTTSCEEET
T ss_pred cccccccccccccccc-cccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCcccCCCccccCCCccEECC
Confidence 00 01100111 3457799999942 13355688888888765422 111 122
Q ss_pred CCc--------cEEEEEEEecCCceEEEEEecCchhhhcCCCCchHHHHH
Q 012425 368 PLG--------NYRIRLTLEDPTARIHAFVYAEDGEKLFGGYPFVDVLKR 409 (464)
Q Consensus 368 ~~g--------~~~~~l~leD~t~~l~~~v~~~da~~f~~~~~~~~~l~~ 409 (464)
.+| .|++.+.+.|.||.+++.++++.|+.+|| -+.+.|.+
T Consensus 332 ~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG--~sa~el~~ 379 (444)
T 4gop_C 332 KCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIG--MSAGELHK 379 (444)
T ss_dssp TTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTT--SCHHHHHH
T ss_pred CCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcC--CCHHHHHH
Confidence 222 26789999999999999999999999998 33344443
No 6
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.42 E-value=1.5e-05 Score=76.27 Aligned_cols=223 Identities=13% Similarity=0.162 Sum_probs=137.0
Q ss_pred ceeeEehHHHhhccCCeEEEEEEEEeeCCccc---ccCCceEEEEEEEeCCCCCCCeEEEEeccCcCCC-CCCCCCCCEE
Q 012425 7 DYRFLKIKDAILSINQKVSFVGVILEVGSPKQ---SKGTDSFCTIKVTDESHTKDGISVNIFAESMEKL-PYIVSVGDII 82 (464)
Q Consensus 7 ~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~~---trGtD~~~tl~I~D~S~~~~gl~v~iF~~~~e~L-P~v~~~GDII 82 (464)
+-.|++|+++.. .....++.|-|+....++. .+|.--..++.|.|++- .|.+.+|.+..+.+ |.++ .|+++
T Consensus 5 ~~~~~~I~~L~p-~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~~~~~l~-~G~vy 79 (246)
T 1jmc_A 5 QSKVVPIASLTP-YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG---EIRATAFNEQVDKFFPLIE-VNKVY 79 (246)
T ss_dssp --CBCCGGGCCT-TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC---EEEEEEEHHHHHHHGGGCC-TTCEE
T ss_pred ccceEEHHHCCC-CCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC---eEEEEEChHHHHHhhhhcc-cCCEE
Confidence 346889999962 2346999999999877642 23445667899999885 49999997654444 5566 89999
Q ss_pred EEeeEEEEEECCeeEEeecCCceeEEE-EeCCC------CCCccccccCCCcccChhHHHHHHHHHHHHhhcccccCCcc
Q 012425 83 LLSHVVMKAHNKQAYALFNKKFSSFAL-YDGKG------GEDFLPYQVSSRFFVRDQDKRIIAAVRKWLLNFQFKEDSKK 155 (464)
Q Consensus 83 ~l~rvkv~~~~g~~~~~~~~~~ss~~l-f~g~~------~~~~~P~~~s~~~~~~~~e~~~v~~Lr~w~~~~~~~~~~~~ 155 (464)
.|.+++++..++....+.+ . |-| |.... ...-.| ...|.+. +
T Consensus 80 ~i~~~~v~~~~~~y~~~~~-~---~ei~~~~~T~I~~~~~~~~iP---~~~~~f~------------------------~ 128 (246)
T 1jmc_A 80 YFSKGTLKIANKQFTAVKN-D---YEMTFNNETSVMPCEDDHHLP---TVQFDFT------------------------G 128 (246)
T ss_dssp EEECCEEEECCGGGCCCCC-S---EEEECCTTCEEEECCSCSCCC---CCCCCBC------------------------C
T ss_pred EECCCEEEEcccCcccCCC-C---EEEEEcCCcEEEEccCcccCC---cceeeeE------------------------E
Confidence 9999999987544332211 1 111 11110 000011 0011111 2
Q ss_pred ccccccCCCCCeEeEEEEEeEEEeeCCCeEEEEEE--eCCCCCCCcccccccccccCCCCCcccCCCCcccccccCCCcc
Q 012425 156 FLLLREIKDGQRINMACKVFHICEVAKGEWMAFVW--DGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVG 233 (464)
Q Consensus 156 f~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~L~Vw--DgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l~~~p~~G 233 (464)
|..|.++..+.++|+++.|+.+..... +.. ||++..-..+ ... -.-|
T Consensus 129 i~~i~~~~~~~~vDViG~V~~v~~~~~-----~~~k~~g~~~~~r~~--------------~l~------------D~sg 177 (246)
T 1jmc_A 129 IDDLENKSKDSLVDIIGICKSYEDATK-----ITVRSNNREVAKRNI--------------YLM------------DTSG 177 (246)
T ss_dssp GGGGGGSCTTCEEEEEEEEEEECCCEE-----EEETTTTEEEEEEEE--------------EEE------------CTTC
T ss_pred HHHHhcccCCCceeEEEEEEEecCeEE-----EEEecCCCccEEEEE--------------EEE------------CCCC
Confidence 333444457899999999998865211 011 2221111110 000 0125
Q ss_pred cEEEEEEccchhHHHhhccCCCCEEEEeceEEEEeCcEEEEEEecccceEEcCCCChHHHHHHHHHH
Q 012425 234 SILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDNLIVERQRSYD 300 (464)
Q Consensus 234 ~~l~V~~~~~~~~~~~~~lk~G~wV~l~Nv~~k~~~G~leG~l~~~ski~~l~~~d~~v~~r~r~y~ 300 (464)
..+++++|..+|.. -..+.|+.|.|++++++..+| .+......++|. ++.+.+++.+.+.=|.
T Consensus 178 ~~i~~tLWg~~a~~--~~~~~~~vv~i~~~~v~~f~g-~~ls~~~~s~i~-inpd~pe~~~l~~w~~ 240 (246)
T 1jmc_A 178 KVVTATLWGEDADK--FDGSRQPVLAIKGARVSDFGG-RSLSVLSSSTII-ANPDIPEAYKLRGWFD 240 (246)
T ss_dssp CEEEEEEEHHHHHH--CCCTTCCEEEEEEEEEECTTS-SEEECCSSCEEE-SSCCSHHHHHHHHHHH
T ss_pred CEEEEEEEchhhhh--cccCCCCEEEEEEEEEEecCC-eEEEecCcceEE-ECCCCHHHHHHHHHHH
Confidence 67899999988763 346889999999999988755 556666677784 6667888877766664
No 7
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.36 E-value=1e-06 Score=74.62 Aligned_cols=92 Identities=15% Similarity=0.334 Sum_probs=75.8
Q ss_pred CceeeEehHHHhhccCCeEEEEEEEEeeCCcc--ccc-CC-ceEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCCCE
Q 012425 6 EDYRFLKIKDAILSINQKVSFVGVILEVGSPK--QSK-GT-DSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDI 81 (464)
Q Consensus 6 ~~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~--~tr-Gt-D~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~GDI 81 (464)
..|.+++|+++. .|..++++|+|++.+.++ .++ |+ .-+..++|.|.|- .|.+.+|.+..+.+..+. .||+
T Consensus 3 ~~~~~~~I~~L~--~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG---~I~~t~w~~~~~~~~~l~-~G~v 76 (115)
T 2k50_A 3 PEHRMDTISKLE--EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG---ELRAVFWTENIKLLKKFR-EGDV 76 (115)
T ss_dssp CTTCCCCTTTCC--TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE---EEEEEEETTGGGGGGTCC-TTSE
T ss_pred cccceEEHHHCC--CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC---eEEEEEeCchhhhhhcCC-CCCE
Confidence 568889999997 789999999999998776 444 43 5789999999985 499999987656666666 8999
Q ss_pred EEEeeEEEEE-ECCeeEEeecCC
Q 012425 82 ILLSHVVMKA-HNKQAYALFNKK 103 (464)
Q Consensus 82 I~l~rvkv~~-~~g~~~~~~~~~ 103 (464)
|.+.+..++. |+|++++..+..
T Consensus 77 v~i~g~~v~~~f~g~~qL~~~~~ 99 (115)
T 2k50_A 77 IRIKDVNIRGGFGGRKEAHLMPR 99 (115)
T ss_dssp EEEEEEEECCCSSSSCEEEECTT
T ss_pred EEEEeeEEccccCCeEEEEECCC
Confidence 9999999986 999988876643
No 8
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.20 E-value=5e-06 Score=69.58 Aligned_cols=84 Identities=18% Similarity=0.280 Sum_probs=69.0
Q ss_pred eeeEehHHHhhccCCe-EEEEEEEEeeCCccccc-CCc-eEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCCCEEEE
Q 012425 8 YRFLKIKDAILSINQK-VSFVGVILEVGSPKQSK-GTD-SFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILL 84 (464)
Q Consensus 8 y~y~~i~d~~~~~~~~-vnviGVVvd~~~P~~tr-GtD-~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~GDII~l 84 (464)
|.+++|+|+. ++.. ||++|.|++...|+.++ |+. ..+++.|.|+|= .|.++++.+. ++ .||+|+|
T Consensus 1 ~~~~kI~dl~--pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG---~I~~tlW~~~------l~-~Gdvv~i 68 (106)
T 2k75_A 1 SDLVKIRDVS--LSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA---RIRISSFGKQ------LQ-DSDVVRI 68 (106)
T ss_dssp CCBCCSTTCC--TTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC---EEEEEEESSC------CC-TTEEEEE
T ss_pred CCcEEHHHcC--CCCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC---eEEEEEEcCc------cC-CCCEEEE
Confidence 6788999997 5554 99999999999886444 543 588999999884 3999999754 55 8999999
Q ss_pred eeEEEEEECCeeEEeecCC
Q 012425 85 SHVVMKAHNKQAYALFNKK 103 (464)
Q Consensus 85 ~rvkv~~~~g~~~~~~~~~ 103 (464)
++.+++.|+|.+++..++.
T Consensus 69 ~ng~v~~~~g~~~L~v~~~ 87 (106)
T 2k75_A 69 DNARVAQFNGYLSLSVGDS 87 (106)
T ss_dssp EEEEEEEETTEEEEEECTT
T ss_pred EeeEEeEECCEEEEEECCc
Confidence 9999999999999976744
No 9
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.08 E-value=1e-05 Score=84.40 Aligned_cols=91 Identities=14% Similarity=0.280 Sum_probs=71.9
Q ss_pred CCCCceeeEehHHHhhc-cCCeEEEEEEEEeeCCccc--c--cCC-ceEEEEEEEeCCCCCCCeEEEEeccCcCCCCC--
Q 012425 3 YNGEDYRFLKIKDAILS-INQKVSFVGVILEVGSPKQ--S--KGT-DSFCTIKVTDESHTKDGISVNIFAESMEKLPY-- 74 (464)
Q Consensus 3 ~~~~~y~y~~i~d~~~~-~~~~vnviGVVvd~~~P~~--t--rGt-D~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~-- 74 (464)
.+...|.|++|+++... .+..|+|||+|++.+++.. + .|+ -.+..|+|.|.|.. .|.|.++.+..+.+..
T Consensus 114 iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~--~i~~tLWg~~A~~f~~~~ 191 (444)
T 4gop_C 114 VPEVKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNR--SVKLTLWGKTAETFPTNA 191 (444)
T ss_dssp SCCCCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCB--EEEEEEEHHHHHTSTTST
T ss_pred CcceeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCC--EEEEEEEhhhhhhhhhhh
Confidence 34567899999999853 4678999999999998753 2 354 57789999999953 4999999886666652
Q ss_pred CCCCCCEEEEeeEEEEEECCe
Q 012425 75 IVSVGDIILLSHVVMKAHNKQ 95 (464)
Q Consensus 75 v~~~GDII~l~rvkv~~~~g~ 95 (464)
....|+||.++.++|+.|+|.
T Consensus 192 ~~~~~~VV~i~~~kV~~f~G~ 212 (444)
T 4gop_C 192 GVDEKPVLAFKGVKVGDFGGR 212 (444)
T ss_dssp TSSSCCEEEEESCEEECTTSS
T ss_pred ccCCCCEEEEEeEEEeecCCe
Confidence 123699999999999999985
No 10
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=98.04 E-value=3.4e-05 Score=65.73 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=68.0
Q ss_pred eEehHHHhhccCC-eEEEEEEEEeeCCcc--ccc-CCceEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCCCEEEEe
Q 012425 10 FLKIKDAILSINQ-KVSFVGVILEVGSPK--QSK-GTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLS 85 (464)
Q Consensus 10 y~~i~d~~~~~~~-~vnviGVVvd~~~P~--~tr-GtD~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~ 85 (464)
|++|+++. ++. .+|++|+|++...++ .++ |+--..++.|.|+|= . |.++++.+..+ .+. .||||.++
T Consensus 2 f~~I~dL~--~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG--~-I~~tlW~~~~~---~~~-~G~vv~i~ 72 (119)
T 1o7i_A 2 EEKVGNLK--PNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG--R-VKLTLWGKHAG---SIK-EGQVVKIE 72 (119)
T ss_dssp BCCGGGCC--TTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE--E-EEEEEEGGGTT---CCC-TTCEEEEE
T ss_pred cEEHHHCc--CCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCC--E-EEEEEECChhh---cCC-CCCEEEEE
Confidence 67889987 454 699999999998765 444 433788999999984 2 99999977543 345 79999999
Q ss_pred eEEEEEECCeeEEeecCC
Q 012425 86 HVVMKAHNKQAYALFNKK 103 (464)
Q Consensus 86 rvkv~~~~g~~~~~~~~~ 103 (464)
+.+++.|+|++++..++.
T Consensus 73 ~g~v~~~~g~~qL~i~~~ 90 (119)
T 1o7i_A 73 NAWTTAFKGQVQLNAGSK 90 (119)
T ss_dssp EEEEEEETTEEEEEECTT
T ss_pred eEEEEEeCCEEEEEECCC
Confidence 999999999999866643
No 11
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.03 E-value=2.1e-05 Score=75.29 Aligned_cols=93 Identities=12% Similarity=0.156 Sum_probs=73.0
Q ss_pred CCCCceeeEehHHHhhc-cCCeEEEEEEEEeeCCccc--c--cCCc-eEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCC
Q 012425 3 YNGEDYRFLKIKDAILS-INQKVSFVGVILEVGSPKQ--S--KGTD-SFCTIKVTDESHTKDGISVNIFAESMEKLPYIV 76 (464)
Q Consensus 3 ~~~~~y~y~~i~d~~~~-~~~~vnviGVVvd~~~P~~--t--rGtD-~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~ 76 (464)
.+...|.|++|+++... .+..|+|||+|++.+++.. + .|++ .+..|+|.|+|. ..|.|.++.+..+.++.
T Consensus 119 iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg--~~i~~tLWg~~a~~~~~-- 194 (246)
T 1jmc_A 119 LPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSG--KVVTATLWGEDADKFDG-- 194 (246)
T ss_dssp CCCCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTC--CEEEEEEEHHHHHHCCC--
T ss_pred CCcceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCC--CEEEEEEEchhhhhccc--
Confidence 34567889999999853 4678999999999999753 2 2544 677999999985 35999999987666763
Q ss_pred CCCCEEEEeeEEEEEECCeeEEee
Q 012425 77 SVGDIILLSHVVMKAHNKQAYALF 100 (464)
Q Consensus 77 ~~GDII~l~rvkv~~~~g~~~~~~ 100 (464)
..|+||.++.++++.|+| ..+..
T Consensus 195 ~~~~vv~i~~~~v~~f~g-~~ls~ 217 (246)
T 1jmc_A 195 SRQPVLAIKGARVSDFGG-RSLSV 217 (246)
T ss_dssp TTCCEEEEEEEEEECTTS-SEEEC
T ss_pred CCCCEEEEEEEEEEecCC-eEEEe
Confidence 379999999999999955 55543
No 12
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.65 E-value=0.00044 Score=57.92 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=66.1
Q ss_pred eEehHHHhhccCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCCCEEEEeeEEE
Q 012425 10 FLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLSHVVM 89 (464)
Q Consensus 10 y~~i~d~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~rvkv 89 (464)
+++|+|+.. .+..||++|.|++...|+ .|+.+ ..+.|-|+|= .|.+.++... ..+.+. .||+|+|+++++
T Consensus 5 ~~kI~dl~~-~~~~v~v~~~V~~~~~~~--~~~~~-~~~~l~DeTG---~I~~t~W~~~--~~~~~~-~G~~V~i~n~~v 74 (109)
T 2kbn_A 5 LTKIVDIVE-NGQWANLKAKVIQLWENT--HESIS-QVGLLGDETG---IIKFTIWKNA--ELPLLE-QGESYLLRSVVV 74 (109)
T ss_dssp BCCTTTCCS-TTCEEEEEEEEEEEEECC--CSSEE-EEEEEECTTC---CEEEEEEGGG--CCCCCC-TTCEEEEEEEEE
T ss_pred ceEHHHCCC-CCCcEEEEEEEEEeEcCC--CCeEE-EEEEEECCCC---eEEEEEECcc--cccccC-CCCEEEEEEEEE
Confidence 567888862 267799999999998753 24444 4589999884 3999999643 577887 799999999999
Q ss_pred EEECCeeEEeecCC
Q 012425 90 KAHNKQAYALFNKK 103 (464)
Q Consensus 90 ~~~~g~~~~~~~~~ 103 (464)
+.|+|++++..++.
T Consensus 75 ~~~~G~~~L~v~~~ 88 (109)
T 2kbn_A 75 GEYNDRFQVQVNKN 88 (109)
T ss_dssp EEETTEEEEEECSS
T ss_pred EEECCEEEEEECCc
Confidence 99999999876644
No 13
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=97.55 E-value=0.0012 Score=54.88 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=68.5
Q ss_pred cccccccCCCCCe-EeEEEEEeEEEeeCCCeEEEEEEeCCCCCCCcccccccccccCCCCCcccCCCCcccccccCCCcc
Q 012425 155 KFLLLREIKDGQR-INMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVG 233 (464)
Q Consensus 155 ~f~~L~di~~~~f-~Dl~~qVv~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l~~~p~~G 233 (464)
+|..|+||+++.- ++++++|+.+.... .--||+ +.........| -.|
T Consensus 2 ~~~kI~dl~pg~~~v~v~~~V~~~~~~~------~~k~G~--~~~v~~~~l~D------------------------eTG 49 (106)
T 2k75_A 2 DLVKIRDVSLSTPYVSVIGKITGIHKKE------YESDGT--TKSVYQGYIED------------------------DTA 49 (106)
T ss_dssp CBCCSTTCCTTCSEEEEEEEEEEEEEEE------EEETTE--EEEEEEEEEEC------------------------SSC
T ss_pred CcEEHHHcCCCCceEEEEEEEEEccccc------cccCCC--eeEEEEEEEEc------------------------CCC
Confidence 3667999999865 99999999987632 011332 11011111111 014
Q ss_pred cEEEEEEccchhHHHhhccCCCCEEEEeceEEEEeCcEEEEEEecccceEEcCCCCh
Q 012425 234 SILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTNDN 290 (464)
Q Consensus 234 ~~l~V~~~~~~~~~~~~~lk~G~wV~l~Nv~~k~~~G~leG~l~~~ski~~l~~~d~ 290 (464)
.+++++|... +++|+.|+++|..++...|.++-.+...+.|..+++.++
T Consensus 50 -~I~~tlW~~~-------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~~~~~~~~ 98 (106)
T 2k75_A 50 -RIRISSFGKQ-------LQDSDVVRIDNARVAQFNGYLSLSVGDSSRIESVNVNIP 98 (106)
T ss_dssp -EEEEEEESSC-------CCTTEEEEEEEEEEEEETTEEEEEECTTSEEEECCSCCC
T ss_pred -eEEEEEEcCc-------cCCCCEEEEEeeEEeEECCEEEEEECCcEEEEECCCCCc
Confidence 3789999754 999999999999999999999999999999998887655
No 14
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=97.53 E-value=0.00032 Score=58.41 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=65.3
Q ss_pred eeEehHHHhhccCCeEEEEEEEEeeCCcccc---cCC-ceEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCCCEEEE
Q 012425 9 RFLKIKDAILSINQKVSFVGVILEVGSPKQS---KGT-DSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILL 84 (464)
Q Consensus 9 ~y~~i~d~~~~~~~~vnviGVVvd~~~P~~t---rGt-D~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~GDII~l 84 (464)
.|.+|+|+. ++..+|++|+|++.++++.- .|+ -...+++|.|+|- .+.+.+|.+.. .+ .+. +||+|.+
T Consensus 4 ~~~~I~dL~--~~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG---~IrvtlW~~~a-~~-~l~-~Gdvv~i 75 (105)
T 3dm3_A 4 DTYNIGELS--PGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG---SIRVTLWDNLT-DI-DVG-RGDYVRV 75 (105)
T ss_dssp CEECGGGCC--SSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE---EEEEEEEGGGG-GS-CCC-TTCEEEE
T ss_pred cceEHHHCC--CCCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECccc-cc-ccC-CCCEEEE
Confidence 578999997 56889999999999987542 354 4678899999874 39999997764 44 555 8999999
Q ss_pred eeEEEEEE-CCeeEEeec
Q 012425 85 SHVVMKAH-NKQAYALFN 101 (464)
Q Consensus 85 ~rvkv~~~-~g~~~~~~~ 101 (464)
+.+++.+ +|.+.+..+
T Consensus 76 -~g~vk~~~~g~~eL~~g 92 (105)
T 3dm3_A 76 -RGYIREGYYGGLECTAN 92 (105)
T ss_dssp -EEEEEECTTSSEEEEEE
T ss_pred -EEEEEEccCCCEEEEeC
Confidence 8999887 447777544
No 15
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.32 E-value=0.0013 Score=55.18 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=69.4
Q ss_pred cccccccCCCCCeEeEEEEEeEEEeeC---------CCeEEEEEEeCCCCCCCcccccccccccCCCCCcccCCCCcccc
Q 012425 155 KFLLLREIKDGQRINMACKVFHICEVA---------KGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDI 225 (464)
Q Consensus 155 ~f~~L~di~~~~f~Dl~~qVv~~~~~~---------~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 225 (464)
.|..|+|+++|+.+|+++.|+.+.... .....+.+.|.|
T Consensus 6 ~~~~I~~L~~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~T-------------------------------- 53 (115)
T 2k50_A 6 RMDTISKLEEGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDT-------------------------------- 53 (115)
T ss_dssp CCCCTTTCCTTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETT--------------------------------
T ss_pred ceEEHHHCCCCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCC--------------------------------
Confidence 467799999999999999999884311 123334444443
Q ss_pred cccCCCcccEEEEEEccchhHHHhhccCCCCEEEEeceEEEE-eCcEEEEEEecccceEEcCC
Q 012425 226 LCSFPAVGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQV-DAGLWFGVLTHFTRLRYVPT 287 (464)
Q Consensus 226 l~~~p~~G~~l~V~~~~~~~~~~~~~lk~G~wV~l~Nv~~k~-~~G~leG~l~~~ski~~l~~ 287 (464)
| .+++++|...+.. ...+++|+.|.|.|..++. ..|.++..+...+.|...++
T Consensus 54 -------G-~I~~t~w~~~~~~-~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~~~ 107 (115)
T 2k50_A 54 -------G-ELRAVFWTENIKL-LKKFREGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDP 107 (115)
T ss_dssp -------E-EEEEEEETTGGGG-GGTCCTTSEEEEEEEEECCCSSSSCEEEECTTCCEEEESS
T ss_pred -------C-eEEEEEeCchhhh-hhcCCCCCEEEEEeeEEccccCCeEEEEECCCceEEECCc
Confidence 2 3688888877653 3679999999999999876 57889999999999988775
No 16
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=97.32 E-value=0.00095 Score=54.64 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=62.3
Q ss_pred EehHHHhhccCCeEEEEEEEEeeCCccc-cc--CC-ceEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCCCEEEEee
Q 012425 11 LKIKDAILSINQKVSFVGVILEVGSPKQ-SK--GT-DSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLSH 86 (464)
Q Consensus 11 ~~i~d~~~~~~~~vnviGVVvd~~~P~~-tr--Gt-D~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~r 86 (464)
.+|+|+. ++..+|++|.|++..+++. ++ |+ --..+++|.|+|= .|.+.+|.+.. .+ .++ +||+|.+ +
T Consensus 3 ~kI~dl~--~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG---~I~~tlW~~~~-~~-~i~-~Gdvv~i-~ 73 (97)
T 3e0e_A 3 YKISELM--PNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG---SIRGTLWNELA-DF-EVK-KGDIAEV-S 73 (97)
T ss_dssp ECGGGCC--TTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE---EEEEEEEGGGG-GC-CCC-TTCEEEE-E
T ss_pred eEHHHCC--CCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECCcc-cc-ccC-CCCEEEE-E
Confidence 3788886 5688999999999998754 22 54 3678899999864 39999997764 44 555 8999999 8
Q ss_pred EEEEEECCeeEEeec
Q 012425 87 VVMKAHNKQAYALFN 101 (464)
Q Consensus 87 vkv~~~~g~~~~~~~ 101 (464)
.+++.+.|.+++..+
T Consensus 74 g~v~~~~~~~el~~g 88 (97)
T 3e0e_A 74 GYVKQGYSGLEISVD 88 (97)
T ss_dssp EEEEEC--CEEEEEE
T ss_pred EEEEEcCCeEEEEEC
Confidence 899999998887655
No 17
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=97.29 E-value=0.0024 Score=54.14 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=66.8
Q ss_pred ccccccCCCCC-eEeEEEEEeEEEeeC--CCeEEEEEEeCCCCCCCcccccccccccCCCCCcccCCCCcccccccCCCc
Q 012425 156 FLLLREIKDGQ-RINMACKVFHICEVA--KGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAV 232 (464)
Q Consensus 156 f~~L~di~~~~-f~Dl~~qVv~~~~~~--~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l~~~p~~ 232 (464)
|..|+||+++. -+|+++.|+.+.... ..+ +|. .+. ......| --
T Consensus 2 f~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k------~G~-~~~--~~~~l~D------------------------~T 48 (119)
T 1o7i_A 2 EEKVGNLKPNMESVNVTVRVLEASEARQIQTK------NGV-RTI--SEAIVGD------------------------ET 48 (119)
T ss_dssp BCCGGGCCTTCSSEEEEEEEEEECCCEEECCT------TCC-EEE--EEEEEEE------------------------TT
T ss_pred cEEHHHCcCCCCcEEEEEEEEECCCCeeEEec------CCC-EEE--EEEEEEe------------------------CC
Confidence 56799999986 799999999885311 101 121 011 1111111 02
Q ss_pred ccEEEEEEccchhHHHhhccCCCCEEEEeceEEEEeCcEEEEEEecccceEEcCC
Q 012425 233 GSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPT 287 (464)
Q Consensus 233 G~~l~V~~~~~~~~~~~~~lk~G~wV~l~Nv~~k~~~G~leG~l~~~ski~~l~~ 287 (464)
|+ +++++|+..+ +.+++|+.|+++|..++...|.++..+...+.|...++
T Consensus 49 G~-I~~tlW~~~~----~~~~~G~vv~i~~g~v~~~~g~~qL~i~~~~~i~~~~~ 98 (119)
T 1o7i_A 49 GR-VKLTLWGKHA----GSIKEGQVVKIENAWTTAFKGQVQLNAGSKTKIAEASE 98 (119)
T ss_dssp EE-EEEEEEGGGT----TCCCTTCEEEEEEEEEEEETTEEEEEECTTCEEEECCC
T ss_pred CE-EEEEEECChh----hcCCCCCEEEEEeEEEEEeCCEEEEEECCCEEEEEcCC
Confidence 54 7999998764 45899999999999999999999999999999988764
No 18
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.21 E-value=0.0069 Score=50.54 Aligned_cols=93 Identities=20% Similarity=0.229 Sum_probs=67.1
Q ss_pred cccccccCCC-CCeEeEEEEEeEEEeeCCCeEEEEEEeCCCCCCCcccccccccccCCCCCcccCCCCcccccccCCCcc
Q 012425 155 KFLLLREIKD-GQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVG 233 (464)
Q Consensus 155 ~f~~L~di~~-~~f~Dl~~qVv~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l~~~p~~G 233 (464)
++..|+||++ +.-+|++++|+.+.....+... ......| . .|
T Consensus 4 ~~~kI~dl~~~~~~v~v~~~V~~~~~~~~~~~~-------------~~~~l~D---e---------------------TG 46 (109)
T 2kbn_A 4 QLTKIVDIVENGQWANLKAKVIQLWENTHESIS-------------QVGLLGD---E---------------------TG 46 (109)
T ss_dssp CBCCTTTCCSTTCEEEEEEEEEEEEECCCSSEE-------------EEEEEEC---T---------------------TC
T ss_pred CceEHHHCCCCCCcEEEEEEEEEeEcCCCCeEE-------------EEEEEEC---C---------------------CC
Confidence 4666999998 7789999999998763221110 0011111 0 13
Q ss_pred cEEEEEEccchhHHHhhccCCCCEEEEeceEEEEeCcEEEEEEecccceEEcCCC
Q 012425 234 SILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPTN 288 (464)
Q Consensus 234 ~~l~V~~~~~~~~~~~~~lk~G~wV~l~Nv~~k~~~G~leG~l~~~ski~~l~~~ 288 (464)
+ |+.++|+... ...+++|+.|+++|..++...|.++-.+...+.|..++.+
T Consensus 47 ~-I~~t~W~~~~---~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 47 I-IKFTIWKNAE---LPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEP 97 (109)
T ss_dssp C-EEEEEEGGGC---CCCCCTTCEEEEEEEEEEEETTEEEEEECSSSEEEECSSC
T ss_pred e-EEEEEECccc---ccccCCCCEEEEEEEEEEEECCEEEEEECCceEEEECCCc
Confidence 3 6899997432 4689999999999999999999999999999999877643
No 19
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.07 E-value=0.0083 Score=52.68 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=67.1
Q ss_pred cccccccCCCCC-eEeEEEEEeEEEeeC----CCeEEEEEEeCCCC----CCCcccccccccccCCCCCcccCCCCcccc
Q 012425 155 KFLLLREIKDGQ-RINMACKVFHICEVA----KGEWMAFVWDGTDA----PPAQISKKLEDEMDHELPLQVEPLPLSRDI 225 (464)
Q Consensus 155 ~f~~L~di~~~~-f~Dl~~qVv~~~~~~----~~~~~L~VwDgT~~----p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 225 (464)
.|..|+||+++. -++|+++|+.+.... .++ -||+.. +... .+.
T Consensus 15 ~~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R-----~dG~~~~~~r~~~V-----------------------~~~ 66 (145)
T 1wjj_A 15 VFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTR-----PASSLSRPSQPSRI-----------------------VEC 66 (145)
T ss_dssp SSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCS-----CSSCCSSCCCCCCC-----------------------EEE
T ss_pred cceEHHHcCCCCCceEEEEEEEEcccccccccccc-----cCCccccccCCceE-----------------------EEE
Confidence 488899999975 589999999987522 111 033310 0000 011
Q ss_pred cccCCCcccEEEEEEccchhHHHhhccCCCCEEEEeceEEEEeCcEEEEEEecccceEEcCC
Q 012425 226 LCSFPAVGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLRYVPT 287 (464)
Q Consensus 226 l~~~p~~G~~l~V~~~~~~~~~~~~~lk~G~wV~l~Nv~~k~~~G~leG~l~~~ski~~l~~ 287 (464)
+..-. .| .+++++|...+ ..+++||.|+|+|..+++..|.++..+...++|..++.
T Consensus 67 lVgDe-TG-~I~ftlW~e~~----~~l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~e 122 (145)
T 1wjj_A 67 LIGDE-TG-CILFTARNDQV----DLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGA 122 (145)
T ss_dssp EEECS-SC-EEEEEECTTHH----HHTCTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCSC
T ss_pred EEEcC-Cc-EEEEEEecCCc----CcCCCCCEEEEeccEEEeECCEEEEEECCCEEEEECCC
Confidence 10000 13 36899998653 35899999999999999999999999998888877654
No 20
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.01 E-value=0.0018 Score=56.91 Aligned_cols=89 Identities=10% Similarity=0.123 Sum_probs=67.5
Q ss_pred CceeeEehHHHhhccC-CeEEEEEEEEeeCCcc---cc-c--C-------CceEEEEEEEeCCCCCCCeEEEEeccCcCC
Q 012425 6 EDYRFLKIKDAILSIN-QKVSFVGVILEVGSPK---QS-K--G-------TDSFCTIKVTDESHTKDGISVNIFAESMEK 71 (464)
Q Consensus 6 ~~y~y~~i~d~~~~~~-~~vnviGVVvd~~~P~---~t-r--G-------tD~~~tl~I~D~S~~~~gl~v~iF~~~~e~ 71 (464)
.+..|++|+|+. ++ ..+|+.|.|++...+. +. | | .--.+++.|-|++=. |.+.+..+ .
T Consensus 12 ~kp~~~kI~dL~--pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~---I~ftlW~e---~ 83 (145)
T 1wjj_A 12 RKPVFVKVEQLK--PGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC---ILFTARND---Q 83 (145)
T ss_dssp CCCSSCCSTTCC--TTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE---EEEEECTT---H
T ss_pred cCccceEHHHcC--CCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE---EEEEEecC---C
Confidence 356788999997 44 4599999999988765 22 2 4 456788899998842 77777754 3
Q ss_pred CCCCCCCCCEEEEeeEEEEEECCeeEEeecCC
Q 012425 72 LPYIVSVGDIILLSHVVMKAHNKQAYALFNKK 103 (464)
Q Consensus 72 LP~v~~~GDII~l~rvkv~~~~g~~~~~~~~~ 103 (464)
.+.+. .||+|+|+++.+..|+|.+.+..++.
T Consensus 84 ~~~l~-~Gd~v~i~na~v~~~~G~~~L~vgk~ 114 (145)
T 1wjj_A 84 VDLMK-PGATVILRNSRIDMFKGTMRLGVDKW 114 (145)
T ss_dssp HHHTC-TTCEEEEEEEEEEEETTEEEEEECTT
T ss_pred cCcCC-CCCEEEEeccEEEeECCEEEEEECCC
Confidence 34455 79999999999999999988866643
No 21
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.68 E-value=0.012 Score=48.78 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=63.7
Q ss_pred ccccccccCCCCCeEeEEEEEeEEEeeCCCeEEEEEEeCCCCCCCcccccccccccCCCCCcccCCCCcccccccCCCcc
Q 012425 154 KKFLLLREIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVG 233 (464)
Q Consensus 154 ~~f~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l~~~p~~G 233 (464)
.+|..|+||+++..+|+++.|+.+.+... + --.||+.-.-..+ ...| -.|
T Consensus 3 ~~~~~I~dL~~~~~v~v~g~V~~~~~~r~--~--~~~~G~~~~v~~~--~l~D------------------------~TG 52 (105)
T 3dm3_A 3 KDTYNIGELSPGMTATFEGEVISALPIKE--F--KRADGSIGKLKSF--IVRD------------------------ETG 52 (105)
T ss_dssp -CEECGGGCCSSEEEEEEEEEEEEEEEEE--E--ECTTSCEEEEEEE--EEEE------------------------TTE
T ss_pred ccceEHHHCCCCCeEEEEEEEEECCCceE--E--EcCCCCeeEEEEE--EEEC------------------------CCC
Confidence 35788999999999999999998875211 0 0013321111111 0000 024
Q ss_pred cEEEEEEccchhHHHhhccCCCCEEEEeceEEEEe-CcEEEEEEecccceEEc
Q 012425 234 SILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVD-AGLWFGVLTHFTRLRYV 285 (464)
Q Consensus 234 ~~l~V~~~~~~~~~~~~~lk~G~wV~l~Nv~~k~~-~G~leG~l~~~ski~~l 285 (464)
.+++++|...+.. .+++|+.|.| |-.+++. .|.+|..+-..+.|...
T Consensus 53 -~IrvtlW~~~a~~---~l~~Gdvv~i-~g~vk~~~~g~~eL~~g~~~~i~~~ 100 (105)
T 3dm3_A 53 -SIRVTLWDNLTDI---DVGRGDYVRV-RGYIREGYYGGLECTANYVEILKKG 100 (105)
T ss_dssp -EEEEEEEGGGGGS---CCCTTCEEEE-EEEEEECTTSSEEEEEEEEEEEECC
T ss_pred -cEEEEEECccccc---ccCCCCEEEE-EEEEEEccCCCEEEEeCCceEEEec
Confidence 3799999877653 7999999999 9889987 66788877766666543
No 22
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.069 Score=44.65 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=69.9
Q ss_pred cccccccCCCCCe-EeEEEEEeEEEeeCCCeEEEEEEeCCCCCCCcccccccccccCCCCCcccCCCCcccccccCCCcc
Q 012425 155 KFLLLREIKDGQR-INMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVG 233 (464)
Q Consensus 155 ~f~~L~di~~~~f-~Dl~~qVv~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l~~~p~~G 233 (464)
.+.+|++|.++.. ..+.++|+++... +.|-....+...+....-| --|
T Consensus 3 ~~~~Is~L~p~~~~w~I~~rV~~k~~~-------r~~~~~~~~g~~~~~~L~D------------------------e~G 51 (114)
T 1ynx_A 3 PIFAIEQLSPYQNVWTIKARVSYKGEI-------KTWHNQRGDGKLFNVNFLD------------------------TSG 51 (114)
T ss_dssp CBCCGGGCCTTTCCCEEEEEEEEEEEE-------EEEECSSCEEEEEEEEEEE------------------------TTE
T ss_pred ceEEHHHCCCCCCceEEEEEEEEeccc-------eEEecCCCCceEEEEEEEC------------------------CCC
Confidence 4778999999875 8999999987652 1221100000001110000 126
Q ss_pred cEEEEEEccchhHHHhhccCCCCEEEEeceEEEEe-------CcEEEEEEecccceEEcCCC
Q 012425 234 SILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVD-------AGLWFGVLTHFTRLRYVPTN 288 (464)
Q Consensus 234 ~~l~V~~~~~~~~~~~~~lk~G~wV~l~Nv~~k~~-------~G~leG~l~~~ski~~l~~~ 288 (464)
.|++++|...+......+++|+|+.|.|-+++.. ..-+|-.|..++.|...+++
T Consensus 52 -~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~ 112 (114)
T 1ynx_A 52 -EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE 112 (114)
T ss_dssp -EEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCCC
T ss_pred -eEEEEECHHHHHHHHhhcccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCCC
Confidence 6899999887765578899999999999999984 34689999999999887653
No 23
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.55 E-value=0.033 Score=45.29 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=56.6
Q ss_pred ccccCCCCCeEeEEEEEeEEEeeCCCeEEEEEEeCCCCCCCcccccccccccCCCCCcccCCCCcccccccCCCcccEEE
Q 012425 158 LLREIKDGQRINMACKVFHICEVAKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILR 237 (464)
Q Consensus 158 ~L~di~~~~f~Dl~~qVv~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l~~~p~~G~~l~ 237 (464)
.|+||+++..++++++|+.+.+. -...--||+.-.-..+ ...| -.| .++
T Consensus 4 kI~dl~~g~~v~i~~~V~~~~~~----r~~~~~~G~~~~v~~~--~l~D------------------------eTG-~I~ 52 (97)
T 3e0e_A 4 KISELMPNLSGTINAEVVTAYPK----KEFSRKDGTKGQLKSL--FLKD------------------------DTG-SIR 52 (97)
T ss_dssp CGGGCCTTEEEEEEEEEEEECCC----EEEC----CCEEEEEE--EEEE------------------------TTE-EEE
T ss_pred EHHHCCCCCcEEEEEEEEECCCc----eEEEcCCCCeeEEEEE--EEEC------------------------CCC-cEE
Confidence 48999999999999999988631 1111224432111111 1111 024 479
Q ss_pred EEEccchhHHHhhccCCCCEEEEeceEEEEeCcEEEEEEecccceE
Q 012425 238 VIIDKGIEKHILHLLKIGKWVKLQNVLCQVDAGLWFGVLTHFTRLR 283 (464)
Q Consensus 238 V~~~~~~~~~~~~~lk~G~wV~l~Nv~~k~~~G~leG~l~~~ski~ 283 (464)
+++|...+.. .+++||.|.+ |=.++...|.+|..+-..+.|.
T Consensus 53 ~tlW~~~~~~---~i~~Gdvv~i-~g~v~~~~~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 53 GTLWNELADF---EVKKGDIAEV-SGYVKQGYSGLEISVDNIGIIE 94 (97)
T ss_dssp EEEEGGGGGC---CCCTTCEEEE-EEEEEEC--CEEEEEEEEEEEE
T ss_pred EEEECCcccc---ccCCCCEEEE-EEEEEEcCCeEEEEECCCcEEE
Confidence 9999877542 7999999999 6677777777887776666654
No 24
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=94.87 E-value=0.23 Score=48.47 Aligned_cols=85 Identities=20% Similarity=0.167 Sum_probs=60.4
Q ss_pred cccccccCCCCCeEeEEEEEeEEEee-----CCCeEEEEEEeCCCCCCCcccccccccccCCCCCcccCCCCcccccccC
Q 012425 155 KFLLLREIKDGQRINMACKVFHICEV-----AKGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSF 229 (464)
Q Consensus 155 ~f~~L~di~~~~f~Dl~~qVv~~~~~-----~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l~~~ 229 (464)
+|..|++++.++.+|+++-|+..... .+-..+|.++|-+.
T Consensus 5 ~y~~l~~l~~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~----------------------------------- 49 (294)
T 1xjv_A 5 IYTPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN----------------------------------- 49 (294)
T ss_dssp CCCCGGGCCSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC-----------------------------------
T ss_pred eEEEHHHhhCCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC-----------------------------------
Confidence 58889999999999999999977642 12255555655431
Q ss_pred CCcccEEEEEEccchhHHHhhcc-CCCCEEEEeceEEEEeCcEEEEEEecc
Q 012425 230 PAVGSILRVIIDKGIEKHILHLL-KIGKWVKLQNVLCQVDAGLWFGVLTHF 279 (464)
Q Consensus 230 p~~G~~l~V~~~~~~~~~~~~~l-k~G~wV~l~Nv~~k~~~G~leG~l~~~ 279 (464)
.| |+|.++.++.+. +..+ ++||.|+|+|++++...|...|.....
T Consensus 50 --~g--l~v~iF~~~~~~-LP~v~~~GDII~l~~vki~~~~g~~~~v~~~~ 95 (294)
T 1xjv_A 50 --VK--LTCLLFSGNYEA-LPIIYKNGDIVRFHRLKIQVYKKETQGITSSG 95 (294)
T ss_dssp --CE--EEEEEEESSGGG-SCCCCSTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred --CC--EEEEEECCChHH-CCCCCCCCCEEEEEEEEEEEECCeEEEEccCC
Confidence 02 455555555543 4556 999999999999999888888865443
No 25
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.065 Score=44.81 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=47.3
Q ss_pred CcccHHhhhcCcccCceeEEEEEEEeecCCCccccccCCcc-EEEEEEEecCCceEEEEEecCchhhhcC
Q 012425 331 PFVTLKDVLTHSQVTAKFKCVVRVVAALPWRSEDFCSPLGN-YRIRLTLEDPTARIHAFVYAEDGEKLFG 399 (464)
Q Consensus 331 p~~Tl~diLt~~~v~~kfr~~VRVV~~~P~~~edf~~~~g~-~~~~l~leD~t~~l~~~v~~~da~~f~~ 399 (464)
+++.|+++- |.. .+.+..|||+..++ +..|....|. -.|.+.|-|.+|+|+|.++++.|++|..
T Consensus 3 ~~~~Is~L~--p~~-~~w~I~~rV~~k~~--~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~f~~ 67 (114)
T 1ynx_A 3 PIFAIEQLS--PYQ-NVWTIKARVSYKGE--IKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNE 67 (114)
T ss_dssp CBCCGGGCC--TTT-CCCEEEEEEEEEEE--EEEEECSSCEEEEEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred ceEEHHHCC--CCC-CceEEEEEEEEecc--ceEEecCCCCceEEEEEEECCCCeEEEEECHHHHHHHHh
Confidence 455566663 322 46899999999875 3455444443 6789999999999999999988888765
No 26
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=92.73 E-value=0.92 Score=41.22 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=55.4
Q ss_pred cccCCCCCeEeEEEEEeEEEee--C-----CCeEEEEEEeCCCCCCCcccccccccccCCCCCcccCCCCcccccccCCC
Q 012425 159 LREIKDGQRINMACKVFHICEV--A-----KGEWMAFVWDGTDAPPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPA 231 (464)
Q Consensus 159 L~di~~~~f~Dl~~qVv~~~~~--~-----~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l~~~p~ 231 (464)
|.+++.|+.+|+++-|+....- . +-..+|.++|-+= +. +.
T Consensus 36 l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~-~~--------------------------------~~ 82 (187)
T 1qzg_A 36 QELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTC-DT--------------------------------SS 82 (187)
T ss_dssp TSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTS-CT--------------------------------TS
T ss_pred HhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCC-CC--------------------------------CC
Confidence 4556889999999999866532 1 2256777776551 00 00
Q ss_pred cccEEEEEEccchhHHHhhcc-CCCCEEEEeceEEEEeCcEEEEEEecc
Q 012425 232 VGSILRVIIDKGIEKHILHLL-KIGKWVKLQNVLCQVDAGLWFGVLTHF 279 (464)
Q Consensus 232 ~G~~l~V~~~~~~~~~~~~~l-k~G~wV~l~Nv~~k~~~G~leG~l~~~ 279 (464)
.| |.|.+..++.+. +..+ ++||.|+|+|++++.+.|...|.....
T Consensus 83 ~g--L~v~iF~~~~e~-LP~V~~~GDIIlL~rvkiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 83 IG--LQIHLFSKQGND-LPVIKQVGQPLLLHQITLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp CC--EEEEEEESSSSC-SCCCCSTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred Cc--eEEEEECCChhh-CCCCCCCCCEEEEEEEEEEEECCeEEEEEcCc
Confidence 12 344444443332 3445 889999999999999999888866554
No 27
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=91.80 E-value=1.3 Score=48.24 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=94.6
Q ss_pred eEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCCCEEEEeeEEEEEECC-----eeEEeecCCceeEEEEeCCCCCCc
Q 012425 44 SFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLSHVVMKAHNK-----QAYALFNKKFSSFALYDGKGGEDF 118 (464)
Q Consensus 44 ~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~rvkv~~~~g-----~~~~~~~~~~ss~~lf~g~~~~~~ 118 (464)
=..+++|+|-.-.....-++|-+|..+ +......|.+.++.++.....++ .+++.+. +.+.|---+... .
T Consensus 511 p~~klRV~d~~~~~k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s~~~~~~~~lqLtAt-k~T~~~~L~~~~---~ 585 (738)
T 1miu_A 511 TVWKLRVTSYKKKEKSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTAT-KRTQYQQLPVSS---E 585 (738)
T ss_dssp CEEEEEEEESSSSCCCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEE-EEEEEEEECCCH---H
T ss_pred eeEEEEEEeccCCCceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCCCccCccceEEEeec-ccceeEECCcch---h
Confidence 457788888555445688899998854 44433479999999998876654 3555444 335554222110 0
Q ss_pred cccccCCCcccChhHHHHHHHHHHHHhhcccccCCcccccccc---CCCCCeEeEEEEEeEEEeeCCCeEEEEEEeCCCC
Q 012425 119 LPYQVSSRFFVRDQDKRIIAAVRKWLLNFQFKEDSKKFLLLRE---IKDGQRINMACKVFHICEVAKGEWMAFVWDGTDA 195 (464)
Q Consensus 119 ~P~~~s~~~~~~~~e~~~v~~Lr~w~~~~~~~~~~~~f~~L~d---i~~~~f~Dl~~qVv~~~~~~~~~~~L~VwDgT~~ 195 (464)
.. ...|++.. ...|..|.+ ....+.||++|-||.+....+..-.+|+.|+.-|
T Consensus 586 ~~---~~~~~pR~---------------------~~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~~~~~~~vylsD~~~n 641 (738)
T 1miu_A 586 TL---LQVYQPRE---------------------SLHFSRLSDPAFQPPCSEVDVVGVVVSVVKPIGLAPLVYLSDECLN 641 (738)
T ss_dssp HH---TTTCCCCC---------------------BCCSGGGGSSSCCTTTTEEEEEEEEEEEECCTTSCCEEEEECSSSC
T ss_pred hh---ccccCCcc---------------------eeeHHHhcCccccCCCCceeEEEEEEEEcccCcccceEEEEcCCCc
Confidence 00 00011111 123555655 5678999999999999664555567777775421
Q ss_pred CCCcccccccccccCCCCCcccCCCCcccccccCCCcccEEEEEEccchhHHHhhccCCCCEEEEeceEEEEe
Q 012425 196 PPAQISKKLEDEMDHELPLQVEPLPLSRDILCSFPAVGSILRVIIDKGIEKHILHLLKIGKWVKLQNVLCQVD 268 (464)
Q Consensus 196 p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l~~~p~~G~~l~V~~~~~~~~~~~~~lk~G~wV~l~Nv~~k~~ 268 (464)
.+-|-+|...+ .+ +++|..|-+.|++.+--
T Consensus 642 ---------------------------------------ll~Ikf~~~l~---eD-~~~~~~va~sNL~~r~~ 671 (738)
T 1miu_A 642 ---------------------------------------LLVVKFGIDLN---ED-IKPRVLIAASNLQCQPE 671 (738)
T ss_dssp ---------------------------------------EEEEEESSCCC---SC-CCSSCEEEEEEEECCSC
T ss_pred ---------------------------------------EEEEEEecCch---hh-CccccEEEEeeeEeecc
Confidence 12344444433 24 99999999999998863
No 28
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=91.23 E-value=1.6 Score=37.31 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=49.8
Q ss_pred CeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEeccCcC----CCCCCCCCCCEEEEeeEEEEEECCeeE
Q 012425 22 QKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESME----KLPYIVSVGDIILLSHVVMKAHNKQAY 97 (464)
Q Consensus 22 ~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~~~e----~LP~v~~~GDII~l~rvkv~~~~g~~~ 97 (464)
..|.++|+|.+... + .=.++++|-|.+= .|.++++....+ ..+.+. +|++|++..- ++.|+|+.+
T Consensus 37 ~~V~iVG~V~~~~~-----~-~~~~~~~ldD~TG---~I~~~~W~~~~~~~~~~~~~~~-~g~yVrV~G~-v~~f~g~~q 105 (136)
T 4gop_B 37 GQLTFVAVVRNISR-----N-ATNVAYSVEDGTG---QIEVRQWLDSSSDDSSKASEIR-NNVYVRVLGT-LKSFQNRRS 105 (136)
T ss_dssp CEEEEEEEEEEEEE-----C-SSEEEEEEECSSC---EEEEEEECC--------CCSCC-TTCEEEEEEE-EEEETTEEE
T ss_pred EEEEEEEEEEEEEe-----c-CCeEEEEEECCCC---CEEEEEecccCCcccccccccC-CCCEEEEEEE-EEEeCCEEE
Confidence 45899999999853 1 2367889999774 399999976533 467776 8999999765 788999987
Q ss_pred Eee
Q 012425 98 ALF 100 (464)
Q Consensus 98 ~~~ 100 (464)
+..
T Consensus 106 i~~ 108 (136)
T 4gop_B 106 ISS 108 (136)
T ss_dssp EEE
T ss_pred EEE
Confidence 753
No 29
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=91.03 E-value=0.25 Score=45.54 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=58.1
Q ss_pred ceeeEehHHHhhc--c----CCeEEEEEEEEeeCCccccc-CCceEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCC
Q 012425 7 DYRFLKIKDAILS--I----NQKVSFVGVILEVGSPKQSK-GTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVG 79 (464)
Q Consensus 7 ~y~y~~i~d~~~~--~----~~~vnviGVVvd~~~P~~tr-GtD~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~G 79 (464)
..+|++|+++... . ....-++|||++-..|+.+. |+.| +..+|.|-.-....+.+-+|....+.+=.+. +|
T Consensus 35 ~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~gk~y-~~w~l~DL~~~~~~V~lfLFg~a~~~~~k~~-~G 112 (200)
T 3ebe_A 35 GRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTF-SIWRLNDLKDLDKYISLFLFGDVHKEHWKTD-QG 112 (200)
T ss_dssp TCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-------CC-EEEEEECSSSTTCCEEEEECHHHHHHHTTCC-TT
T ss_pred CCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCCCCeE-EEEEEEecCCCCcEEEEEEechHHHHhcCcC-Cc
Confidence 4578888888642 1 24577999999999998775 5555 4689988776555699999987655555666 89
Q ss_pred CEEEEeeEEEE
Q 012425 80 DIILLSHVVMK 90 (464)
Q Consensus 80 DII~l~rvkv~ 90 (464)
+||-|-|-.+-
T Consensus 113 ~ViaiLNP~i~ 123 (200)
T 3ebe_A 113 TVIGLLNANPM 123 (200)
T ss_dssp EEEEEESCEEC
T ss_pred eEEEEECCEEc
Confidence 99999998863
No 30
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=90.20 E-value=2.8 Score=32.45 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=63.8
Q ss_pred ehHHHhhccCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEecc-CcCCCCCCCCCCCEEEEeeEEEE
Q 012425 12 KIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAE-SMEKLPYIVSVGDIILLSHVVMK 90 (464)
Q Consensus 12 ~i~d~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~-~~e~LP~v~~~GDII~l~rvkv~ 90 (464)
-|+++++...+..+|.+-|+|... +|--+.++|.|.|+. ..++|.||-. .-|.-... ++.---.+..+.-|
T Consensus 3 lisevlktskqylsvlaqvvdiqs------sdknirlkicdnscn-qelkvvifpdlcyewrdkf-sinkwyyfnefvrq 74 (109)
T 3u4z_A 3 LISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCN-QELKVVIFPDLCYEWRDKF-SINKWYYFNEFVRQ 74 (109)
T ss_dssp CHHHHTTCCCSEEEEEEEEEEEEC------CSSCEEEEEECSSCS-SCEEEEECTTHHHHHTTTC-CTTCEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhc------CCCceEEEeeccccc-ceeEEEEchhHHHHHHhhc-chhhhhhHHHHHHH
Confidence 367787777888999999999853 577789999999996 4599999943 12333333 37777888888889
Q ss_pred EECCeeEEeecC
Q 012425 91 AHNKQAYALFNK 102 (464)
Q Consensus 91 ~~~g~~~~~~~~ 102 (464)
.||+++++-.|-
T Consensus 75 iyndevqlknni 86 (109)
T 3u4z_A 75 IYNDEVQLKNNI 86 (109)
T ss_dssp ESSSCEEEECCT
T ss_pred HhhhHHhHhhhh
Confidence 999999987553
No 31
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=89.93 E-value=2.7 Score=35.58 Aligned_cols=68 Identities=10% Similarity=0.210 Sum_probs=48.2
Q ss_pred CeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEeccCcC---CCCCCCCCCCEEEEeeEEEEEECCeeEE
Q 012425 22 QKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESME---KLPYIVSVGDIILLSHVVMKAHNKQAYA 98 (464)
Q Consensus 22 ~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~~~e---~LP~v~~~GDII~l~rvkv~~~~g~~~~ 98 (464)
..|.++|+|.+... .+-.++++|-|.+- ..|.++++....+ ....+. .||.|++..- ++.|+|+.++
T Consensus 32 ~~V~iVG~V~~~~~------~~~~~~~~ldD~TG--~~I~~~~W~~~~~~~~~~~~~~-~g~yVrV~G~-l~~f~g~~qi 101 (132)
T 3kdf_D 32 SQVTIVGIIRHAEK------APTNIVYKIDDMTA--APMDVRQWVDTDDTSSENTVVP-PETYVKVAGH-LRSFQNKKSL 101 (132)
T ss_dssp CEEEEEEEEEEEEE------CSSEEEEEEECSSS--SCEEEEEEC---------CCCC-TTCEEEEEEE-EEEETTEEEE
T ss_pred EEEEEEEEEEEEEE------cCCeEEEEEECCCC--CEEEEEEEccCCCccccccccc-CCCEEEEEEE-EEeECCEEEE
Confidence 45899999999852 24567889999764 2399999976532 255565 8999999765 8889998776
Q ss_pred e
Q 012425 99 L 99 (464)
Q Consensus 99 ~ 99 (464)
.
T Consensus 102 ~ 102 (132)
T 3kdf_D 102 V 102 (132)
T ss_dssp E
T ss_pred E
Confidence 4
No 32
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=89.31 E-value=0.61 Score=40.62 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=55.1
Q ss_pred eeEehHHHhhccCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCC--------------CC------CeEEEEeccC
Q 012425 9 RFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHT--------------KD------GISVNIFAES 68 (464)
Q Consensus 9 ~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~--------------~~------gl~v~iF~~~ 68 (464)
+|.-|+|+. .++.++++|=|+..- . .+ -+++|.|+|=+.. |. .|.|.+|-++
T Consensus 4 kf~llkdv~--~~~F~Dl~~qVv~~~-~---~~--~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~h 75 (143)
T 4hik_A 4 SFSLLSQIT--PHQRCSFYAQVIKTW-Y---SD--KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEH 75 (143)
T ss_dssp CCCCGGGCC--SSCEEEEEEEEEEEE-E---CS--SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHH
T ss_pred hhhhHHhCC--CCCeEEEEEEEEEEE-c---CC--CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcH
Confidence 466788887 799999999999832 1 22 6778899985543 11 2899998776
Q ss_pred cCCCCC-CCCCCCEEEEeeEEEEEEC
Q 012425 69 MEKLPY-IVSVGDIILLSHVVMKAHN 93 (464)
Q Consensus 69 ~e~LP~-v~~~GDII~l~rvkv~~~~ 93 (464)
.+..=. +. +||.|+|+|++++.-+
T Consensus 76 a~~ar~~lk-~Gd~v~L~Nv~iK~~~ 100 (143)
T 4hik_A 76 DFYCRNYIK-EGDYVVMKNVRTKIDH 100 (143)
T ss_dssp HHHHTTTCC-TTCEEEEEEEEEEECT
T ss_pred HHHHHhhCC-CCCEEEEEeEEEeecC
Confidence 433333 44 8999999999998754
No 33
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=88.95 E-value=2.4 Score=44.29 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=67.2
Q ss_pred cccccccC--CCCCeEeEEEEEeEEEee-----CCCeEEEEEEeCCCC-CCCcccccccccccCCCCCcccCCCCccccc
Q 012425 155 KFLLLREI--KDGQRINMACKVFHICEV-----AKGEWMAFVWDGTDA-PPAQISKKLEDEMDHELPLQVEPLPLSRDIL 226 (464)
Q Consensus 155 ~f~~L~di--~~~~f~Dl~~qVv~~~~~-----~~~~~~L~VwDgT~~-p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~l 226 (464)
.|..|+++ +.++.+|+++-|+....- .+-..+|.++|-+-+ +...+ .| +..
T Consensus 37 ~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~----------------~G--l~~--- 95 (495)
T 1jb7_A 37 EYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKG----------------AG--DAS--- 95 (495)
T ss_dssp CBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTS----------------SC--SCB---
T ss_pred ccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccc----------------cc--ccc---
Confidence 58899988 579999999999976532 133778888887742 11000 00 100
Q ss_pred ccCCCcccEEEEEEccchhHHHhhcc-CCCCEEEEeceEEEEeCcEEEEEEecc--cceEEcCC
Q 012425 227 CSFPAVGSILRVIIDKGIEKHILHLL-KIGKWVKLQNVLCQVDAGLWFGVLTHF--TRLRYVPT 287 (464)
Q Consensus 227 ~~~p~~G~~l~V~~~~~~~~~~~~~l-k~G~wV~l~Nv~~k~~~G~leG~l~~~--ski~~l~~ 287 (464)
..+.|.+..++.+. +..+ ++||.|+|+|++++...|...|..... +.+.+-+.
T Consensus 96 -------~~~~v~iF~~~~e~-LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~ 151 (495)
T 1jb7_A 96 -------DYATLVLYAKRFED-LPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFST 151 (495)
T ss_dssp -------CCEEEEEEESSGGG-SCCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECS
T ss_pred -------CceEEEEECCChHH-CCCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeC
Confidence 11245555454443 4556 789999999999999988888877644 44545443
No 34
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=86.85 E-value=0.6 Score=42.15 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=26.8
Q ss_pred EEEEEEEecCCceEEEEEecCchhhhcC
Q 012425 372 YRIRLTLEDPTARIHAFVYAEDGEKLFG 399 (464)
Q Consensus 372 ~~~~l~leD~t~~l~~~v~~~da~~f~~ 399 (464)
|.+.+.+.|.||.+++.++++.|+.+||
T Consensus 79 y~l~~~i~D~Tg~~~~t~F~~~ae~ilG 106 (181)
T 1l1o_C 79 MILSVNIADFQENQWVTCFQESAEAILG 106 (181)
T ss_dssp EEEEEEEECSSCEEEEEEEHHHHHHHHS
T ss_pred EEEEEEEEeCCCCEEEEEEhHHHHHHhC
Confidence 7789999999999999999999999998
No 35
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=84.68 E-value=6 Score=37.80 Aligned_cols=68 Identities=10% Similarity=0.218 Sum_probs=48.5
Q ss_pred CeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEeccCcC---CCCCCCCCCCEEEEeeEEEEEECCeeEE
Q 012425 22 QKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESME---KLPYIVSVGDIILLSHVVMKAHNKQAYA 98 (464)
Q Consensus 22 ~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~~~e---~LP~v~~~GDII~l~rvkv~~~~g~~~~ 98 (464)
..|.++|+|++... ++ =.++++|-|.+=. -|.++++....+ ....+. .|++|+++. +++.|+|+.++
T Consensus 72 ~~V~ivG~V~~i~~-----~~-~~~~~~L~D~TG~--~I~~k~W~~~~~~~~~~~~~~-~G~yVrV~G-~v~~f~g~~qi 141 (270)
T 2pi2_A 72 SQVTIVGIIRHAEK-----AP-TNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTVVP-PETYVKVAG-HLRSFQNKKSL 141 (270)
T ss_dssp SEEEEEEEEEEEEE-----CS-SEEEEEEECSSSS--CEEEEEECC-------CCCCC-TTCEEEEEE-EEEEETTEEEE
T ss_pred EEEEEEEEEEEEEe-----cc-ceEEEEEECCCCC--EEEEEEEcCcCcccchhhcCC-CCCEEEEEE-EEEecCCeeEE
Confidence 35999999999742 23 4568899997631 299999965432 344555 899999975 78889999887
Q ss_pred e
Q 012425 99 L 99 (464)
Q Consensus 99 ~ 99 (464)
.
T Consensus 142 ~ 142 (270)
T 2pi2_A 142 V 142 (270)
T ss_dssp E
T ss_pred E
Confidence 5
No 36
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=83.28 E-value=9.8 Score=32.51 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=64.2
Q ss_pred EehHHHhhccCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEecc-CcCCCCCCCCCCCEEEEeeEEE
Q 012425 11 LKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAE-SMEKLPYIVSVGDIILLSHVVM 89 (464)
Q Consensus 11 ~~i~d~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~-~~e~LP~v~~~GDII~l~rvkv 89 (464)
.-|+++++...+..+|.+-|+|... +|--+.++|.|.|+. ..++|.||-+ .-|.-... ++.---.+..+.-
T Consensus 120 llisevlktskqylsvlaqvvdiqs------sdknirlkicdnscn-qelkvvifpdlcyewrdkf-sinkwyyfnefvr 191 (213)
T 3u58_A 120 LLISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCN-QELKVVIFPDLCYEWRDKF-SINKWYYFNEFVR 191 (213)
T ss_dssp BCHHHHTTCCCSEEEEEEEEEEEEE------CSSCEEEEEECTTCS-CCEEEEECTTTTGGGTTCC-CTTCEEEEEEEEE
T ss_pred eehHHHHHHhHHHHHHHHHhhcccc------CCCceEEEeeccccc-ceeEEEEchhHhhHhhhhc-chhhhhhHHHHHH
Confidence 4478888777888999999999853 577789999999996 4599999954 23334443 4777788888888
Q ss_pred EEECCeeEEeec
Q 012425 90 KAHNKQAYALFN 101 (464)
Q Consensus 90 ~~~~g~~~~~~~ 101 (464)
|.||+++++-.|
T Consensus 192 qiyndevqlknn 203 (213)
T 3u58_A 192 QIYNDEVQLKNN 203 (213)
T ss_dssp CCSSSSCEEECC
T ss_pred HHhhhhhhhhhh
Confidence 889999988655
No 37
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=82.26 E-value=0.49 Score=42.52 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=27.2
Q ss_pred EEEEEEEecCCceEEEEEecCchhhhcCC
Q 012425 372 YRIRLTLEDPTARIHAFVYAEDGEKLFGG 400 (464)
Q Consensus 372 ~~~~l~leD~t~~l~~~v~~~da~~f~~~ 400 (464)
|.+.+.+.|.||.+++.++++.|+.+||.
T Consensus 75 Yil~~~i~D~TG~~wvt~F~e~ae~ilG~ 103 (172)
T 3u50_C 75 LMLRAFVQDSTGTIPVMIFDQQSSQLINQ 103 (172)
T ss_dssp ECEEEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCEEEEEEhHHHHHHhCC
Confidence 66899999999999999999999999985
No 38
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=64.40 E-value=6.1 Score=34.68 Aligned_cols=67 Identities=24% Similarity=0.251 Sum_probs=48.9
Q ss_pred CCCcccHHhhh-cCcccCceeEEEEEEEeecCCCccccccCCccEEEEEEEecCCceEEEEEecCchhhhcC
Q 012425 329 DGPFVTLKDVL-THSQVTAKFKCVVRVVAALPWRSEDFCSPLGNYRIRLTLEDPTARIHAFVYAEDGEKLFG 399 (464)
Q Consensus 329 ~~p~~Tl~diL-t~~~v~~kfr~~VRVV~~~P~~~edf~~~~g~~~~~l~leD~t~~l~~~v~~~da~~f~~ 399 (464)
+-||+=|.-++ ..|+. -+.++|-+|+=.-...+..+.|.|.+...+.|+||.|+|.+.++=-..+.|
T Consensus 20 s~PFtYL~~l~~~~~~~----~~~~kVKafI~tl~~~l~~~~~~W~l~a~IsDGS~~LdV~f~~~VLt~lIG 87 (157)
T 3mxn_A 20 SPPFVYLSVLMASKPKE----VTTVKVKAFIVTLTGNLSSSGGIWSITAKVSDGTAYLDVDFVDEILTSLIG 87 (157)
T ss_dssp CSSCCCHHHHHHTCCSS----CEEEEEEEEEEEECSCCBCGGGSCBCEEEEECSSCEEEEEECHHHHHHHHS
T ss_pred CCchHHHHHHHhhccCC----ceEEEEEEEEEEeccceeecCCEEEEEEEEeCCceeEEEEeeHHHHHhhhC
Confidence 67899999888 34443 444666666555555555556679999999999999999998765556665
No 39
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=56.09 E-value=22 Score=29.46 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCEEEEe-------eEEEEEECCeeEEeecCCc-eeEEEE
Q 012425 70 EKLPYIVSVGDIILLS-------HVVMKAHNKQAYALFNKKF-SSFALY 110 (464)
Q Consensus 70 e~LP~v~~~GDII~l~-------rvkv~~~~g~~~~~~~~~~-ss~~lf 110 (464)
.++|.+. +||+|.+| +=++|.|.|-+-+.-+.+. ++|.|=
T Consensus 14 ~~iP~f~-~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvR 61 (114)
T 3r8s_P 14 QDVPSFR-PGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVR 61 (114)
T ss_dssp SCCCCCC-TTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEE
T ss_pred cCCCccC-CCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEE
Confidence 5799988 89999997 2357788887666655432 567753
No 40
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=53.24 E-value=22 Score=30.61 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCEEEEeeE-------EEEEECCeeEEeecCCc-eeEEE
Q 012425 70 EKLPYIVSVGDIILLSHV-------VMKAHNKQAYALFNKKF-SSFAL 109 (464)
Q Consensus 70 e~LP~v~~~GDII~l~rv-------kv~~~~g~~~~~~~~~~-ss~~l 109 (464)
.++|.+. +||+|.+|=- ++|.|.|-+-+.-+.+. ++|.|
T Consensus 17 ~diP~F~-~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtV 63 (146)
T 3v2d_T 17 TDLPEFR-PGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTV 63 (146)
T ss_dssp CCCCCCC-TTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEE
T ss_pred ccCCCcC-CCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEE
Confidence 5799987 8999999732 46778887666555432 56775
No 41
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=49.15 E-value=31 Score=30.21 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred CeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEeccC---cCCCCCCCCCCCEEEEeeEEEEEECCeeEE
Q 012425 22 QKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAES---MEKLPYIVSVGDIILLSHVVMKAHNKQAYA 98 (464)
Q Consensus 22 ~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~~---~e~LP~v~~~GDII~l~rvkv~~~~g~~~~ 98 (464)
..|.+.|+|+... .+.++ ..++|=|.|-.. |.|.++-+. ...+.....+|++|++ +=.|+.|+|+.+.
T Consensus 48 ~~V~IvGiVv~~~-~~~~~-----~~ytIDD~TG~~--I~cv~w~~~~~~~~~~~~~l~~G~~VrV-~G~v~~fr~~rqI 118 (159)
T 3kf6_A 48 RWIQIVGYIAAID-IYEGK-----HVLTVDDCSGMV--LRVVFIIQDDFSMSKRAISMSPGNVVCV-FGKINSFRSEVEL 118 (159)
T ss_dssp CEEEEEEEEEEEE-EETTE-----EEEEEECSSSCE--EEEEEEGGGCHHHHHHHTTCCTTCEEEE-EEEEECSSSSCEE
T ss_pred EEEEEEEEEEEEE-EeCCE-----EEEEEecCCCCe--EEEEEEccCCCCcccccccCCCCCEEEE-EEEEEeeCCEEEE
Q ss_pred ee
Q 012425 99 LF 100 (464)
Q Consensus 99 ~~ 100 (464)
..
T Consensus 119 ~~ 120 (159)
T 3kf6_A 119 IA 120 (159)
T ss_dssp EE
T ss_pred EE
No 42
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=48.11 E-value=27 Score=28.15 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=25.4
Q ss_pred CCCCCCCCCEEEEee------EEEEEECCeeEEeecCCc-eeEEEEe
Q 012425 72 LPYIVSVGDIILLSH------VVMKAHNKQAYALFNKKF-SSFALYD 111 (464)
Q Consensus 72 LP~v~~~GDII~l~r------vkv~~~~g~~~~~~~~~~-ss~~lf~ 111 (464)
+|.+. +||+|.+|- =++|.|.|-+-+..+.+. ++|.|=+
T Consensus 1 iP~f~-~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRk 46 (98)
T 2ftc_K 1 IPEFY-VGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRN 46 (98)
T ss_pred CCccC-CCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEE
Confidence 58877 899999982 235677776666555332 5566533
No 43
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=45.47 E-value=48 Score=36.08 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=50.6
Q ss_pred EehHHHhh----ccCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCCCEEEEee
Q 012425 11 LKIKDAIL----SINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLSH 86 (464)
Q Consensus 11 ~~i~d~~~----~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~r 86 (464)
+++.++.. .+.+-|+++|+|+...... +-.+ .+-|.|++..- +.|+++..-.++ +. +|.+|-+.|
T Consensus 597 ~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~~--~~~~---~vylsD~~~nl--l~Ikf~~~l~eD---~~-~~~~va~sN 665 (738)
T 1miu_A 597 LHFSRLSDPAFQPPCSEVDVVGVVVSVVKPI--GLAP---LVYLSDECLNL--LVVKFGIDLNED---IK-PRVLIAASN 665 (738)
T ss_dssp CCSGGGGSSSCCTTTTEEEEEEEEEEEECCT--TSCC---EEEEECSSSCE--EEEEESSCCCSC---CC-SSCEEEEEE
T ss_pred eeHHHhcCccccCCCCceeEEEEEEEEcccC--cccc---eEEEEcCCCcE--EEEEEecCchhh---Cc-cccEEEEee
Confidence 34555542 3567799999999996542 1123 45689999753 777777765555 65 899999999
Q ss_pred EEEEEEC
Q 012425 87 VVMKAHN 93 (464)
Q Consensus 87 vkv~~~~ 93 (464)
++.+...
T Consensus 666 L~~r~~~ 672 (738)
T 1miu_A 666 LQCQPES 672 (738)
T ss_dssp EECCSCC
T ss_pred eEeeccc
Confidence 9988653
No 44
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=41.87 E-value=57 Score=37.06 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=28.3
Q ss_pred ccccccCCC-CCeEeEEEEEeEEEee--C--CCeEEEEEEeCCCC
Q 012425 156 FLLLREIKD-GQRINMACKVFHICEV--A--KGEWMAFVWDGTDA 195 (464)
Q Consensus 156 f~~L~di~~-~~f~Dl~~qVv~~~~~--~--~~~~~L~VwDgT~~ 195 (464)
...|+||.+ ...+=+.++|.++-.. . ...++++|+|||+.
T Consensus 7 ~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~ 51 (1041)
T 3f2b_A 7 VRRLETIVEEERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNS 51 (1041)
T ss_dssp CBCGGGCCSCEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCE
T ss_pred cccHHHhhcccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCC
Confidence 556888864 4567788888877542 2 23678899999964
No 45
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=39.38 E-value=24 Score=29.67 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=18.1
Q ss_pred EEEEEEecCCceEEEEEecCc
Q 012425 373 RIRLTLEDPTARIHAFVYAED 393 (464)
Q Consensus 373 ~~~l~leD~t~~l~~~v~~~d 393 (464)
.+.|+|+|.||.|.|-++.+.
T Consensus 54 ~~~~~ldD~TG~I~~~~W~~~ 74 (136)
T 4gop_B 54 NVAYSVEDGTGQIEVRQWLDS 74 (136)
T ss_dssp EEEEEEECSSCEEEEEEECC-
T ss_pred eEEEEEECCCCCEEEEEeccc
Confidence 578999999999999999753
No 46
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=38.11 E-value=39 Score=27.51 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=22.2
Q ss_pred EEEEEEccchhHHHhhccCCCCEE
Q 012425 235 ILRVIIDKGIEKHILHLLKIGKWV 258 (464)
Q Consensus 235 ~l~V~~~~~~~~~~~~~lk~G~wV 258 (464)
+++|++|.--|+.+.+.++.|+.|
T Consensus 54 fi~vv~wgk~AE~~~~yl~KG~~V 77 (108)
T 3koj_A 54 RLKVVGWGAVAQELQDRCRLNDEV 77 (108)
T ss_dssp EEEEEEETHHHHHHHHHCCTTCEE
T ss_pred EEEEEEEhHHHHHHHHhCCCCCEE
Confidence 589999999999988999999999
No 47
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=35.57 E-value=28 Score=30.69 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCEEEEee-------EEEEEECCeeEEeecCCc-eeEEEE
Q 012425 70 EKLPYIVSVGDIILLSH-------VVMKAHNKQAYALFNKKF-SSFALY 110 (464)
Q Consensus 70 e~LP~v~~~GDII~l~r-------vkv~~~~g~~~~~~~~~~-ss~~lf 110 (464)
.++|.+. +||+|.+|= =++|.|.|-+-+..+.+. ++|.|=
T Consensus 22 ~diP~Fr-~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVR 69 (166)
T 2zjr_M 22 RQLPDFR-PGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVR 69 (166)
T ss_dssp CCCCCCS-SSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEE
T ss_pred cCCCCcC-CCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEE
Confidence 5799987 899999982 246788887766655433 667763
No 48
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=35.01 E-value=2.8e+02 Score=25.84 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=23.4
Q ss_pred CeEeEEEEEeEEEeeCCCeEEEEEEeCCC
Q 012425 166 QRINMACKVFHICEVAKGEWMAFVWDGTD 194 (464)
Q Consensus 166 ~f~Dl~~qVv~~~~~~~~~~~L~VwDgT~ 194 (464)
..+.+++.|+++.. ....+.+.+-|+|+
T Consensus 72 ~~V~ivG~V~~i~~-~~~~~~~~L~D~TG 99 (270)
T 2pi2_A 72 SQVTIVGIIRHAEK-APTNIVYKIDDMTA 99 (270)
T ss_dssp SEEEEEEEEEEEEE-CSSEEEEEEECSSS
T ss_pred EEEEEEEEEEEEEe-ccceEEEEEECCCC
Confidence 46899999999865 45788999999997
No 49
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=33.81 E-value=44 Score=37.99 Aligned_cols=84 Identities=15% Similarity=0.265 Sum_probs=59.3
Q ss_pred eeEehHHHhhccCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEeccCcCC---CCCCCCCCCEEEEe
Q 012425 9 RFLKIKDAILSINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEK---LPYIVSVGDIILLS 85 (464)
Q Consensus 9 ~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~~~e~---LP~v~~~GDII~l~ 85 (464)
..++|.++... ...|-+-|-|-+... +.+|..-...+|.|+|-+. +|.|+.|.++.+. +-.+. .|+-|+++
T Consensus 6 ~~~~~~~~~~~-~~~~~~~g~v~~~~~-~~~~~~~~~~~~~~td~~~---~~~~k~f~~~~~~~~~~~~~~-~g~~~~~~ 79 (1041)
T 3f2b_A 6 PVRRLETIVEE-ERRVVVQGYVFDAEV-SELKSGRTLLTMKITDYTN---SILVKMFSRDKEDAELMSGVK-KGMWVKVR 79 (1041)
T ss_dssp -CBCGGGCCSC-EEEEEEEEEEEEEEE-EECTTSCEEEEEEEECSSC---EEEEEEECSSHHHHHHHHTCC-TTCEEEEE
T ss_pred CcccHHHhhcc-cceEEEEEEEEEEEE-EEccCCCEEEEEEEEeCCC---CEEEEEeecccchHHHHhcCC-CCCEEEEE
Confidence 35678887632 356889999987643 3445456789999999864 4999999876443 33566 79999997
Q ss_pred -eEEEEEECCeeEE
Q 012425 86 -HVVMKAHNKQAYA 98 (464)
Q Consensus 86 -rvkv~~~~g~~~~ 98 (464)
++....|.+++..
T Consensus 80 g~~~~d~~~~~~~~ 93 (1041)
T 3f2b_A 80 GSVQNDTFVRDLVI 93 (1041)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEeccCCcceEE
Confidence 6677777776544
No 50
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=29.81 E-value=30 Score=40.02 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=36.1
Q ss_pred EehHHHhh-----ccCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCCCCCeEEEEeccCcCCCCCCCCCCCEEEEe
Q 012425 11 LKIKDAIL-----SINQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHTKDGISVNIFAESMEKLPYIVSVGDIILLS 85 (464)
Q Consensus 11 ~~i~d~~~-----~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~ 85 (464)
+++.++.. ..++.|.+.|+|+..+.| .|+..+-++-++|-|.+-. +.|.+|.+..+.....-..|.+++++
T Consensus 1027 ~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~-~Tk~G~~maf~tleD~tg~---~evvvf~~~~~~~~~~l~~~~~~~v~ 1102 (1220)
T 2hpi_A 1027 CTIEELSEFVRELPGKPKVLLSGMVEEVVRK-PTRSGGMMARFTLSDETGA---LEVVVFGRAYEGVSPKLKEDIPLLVL 1102 (1220)
T ss_dssp SCTTTHHHHHSSSSSSCEEEEEEEECCC-------------CEEEEETTEE---EEEC-------------CTTCEEEEE
T ss_pred ccHHHHhhhhhhccCCCeEEEEEEEEEEEEe-ecCCCCeEEEEEEEECCCC---EEEEEcHHHHHHHHHHhccCCEEEEE
Confidence 35566642 246779999999999887 5555677889999998853 99999988777777655456666664
Q ss_pred eEEEEE
Q 012425 86 HVVMKA 91 (464)
Q Consensus 86 rvkv~~ 91 (464)
.+++.
T Consensus 1103 -G~v~~ 1107 (1220)
T 2hpi_A 1103 -AEVEK 1107 (1220)
T ss_dssp -EEEC-
T ss_pred -EEEEE
Confidence 45653
No 51
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=29.39 E-value=56 Score=26.55 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=23.0
Q ss_pred cEEEEEEccchhHHHhhccCCCCEEEE
Q 012425 234 SILRVIIDKGIEKHILHLLKIGKWVKL 260 (464)
Q Consensus 234 ~~l~V~~~~~~~~~~~~~lk~G~wV~l 260 (464)
.+++|++|...|+.+.+.++.|+.|.+
T Consensus 50 ~~~~v~~wg~~Ae~~~~~l~KG~~V~V 76 (116)
T 3vdy_A 50 DYVNCTLWRKTAENTALYCQKGSLVGV 76 (116)
T ss_dssp EEEEEEEEHHHHHHHHHHCCTTCEEEE
T ss_pred EEEEEEEECHHHHHHHHhCCCCCEEEE
Confidence 358999999999888888999999853
No 52
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=27.96 E-value=19 Score=31.48 Aligned_cols=54 Identities=20% Similarity=0.154 Sum_probs=37.0
Q ss_pred CCCCCceeeEehHHHhhc-cCCeEEEEEEEEeeCCcccccCCceEEEEEEEeCCC
Q 012425 2 DYNGEDYRFLKIKDAILS-INQKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESH 55 (464)
Q Consensus 2 ~~~~~~y~y~~i~d~~~~-~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~ 55 (464)
|+..+.|.|...=.|... ....+-|.|.|+....--...|+-|..+.+|.|.|-
T Consensus 17 ~l~s~PFtYL~~l~~~~~~~~~~~kVKafI~tl~~~l~~~~~~W~l~a~IsDGS~ 71 (157)
T 3mxn_A 17 DLYSPPFVYLSVLMASKPKEVTTVKVKAFIVTLTGNLSSSGGIWSITAKVSDGTA 71 (157)
T ss_dssp HHHCSSCCCHHHHHHTCCSSCEEEEEEEEEEEECSCCBCGGGSCBCEEEEECSSC
T ss_pred ccCCCchHHHHHHHhhccCCceEEEEEEEEEEeccceeecCCEEEEEEEEeCCce
Confidence 455667777665444321 124477888888865544556799999999999986
No 53
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=27.75 E-value=2.5e+02 Score=23.00 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=24.2
Q ss_pred CeEeEEEEEeEEEeeCCCeEEEEEEeCCC
Q 012425 166 QRINMACKVFHICEVAKGEWMAFVWDGTD 194 (464)
Q Consensus 166 ~f~Dl~~qVv~~~~~~~~~~~L~VwDgT~ 194 (464)
+.+.+++.|+.+.. ....+.+.+=|||+
T Consensus 32 ~~V~iVG~V~~~~~-~~~~~~~~ldD~TG 59 (132)
T 3kdf_D 32 SQVTIVGIIRHAEK-APTNIVYKIDDMTA 59 (132)
T ss_dssp CEEEEEEEEEEEEE-CSSEEEEEEECSSS
T ss_pred EEEEEEEEEEEEEE-cCCeEEEEEECCCC
Confidence 46899999999965 56799999999998
No 54
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=25.14 E-value=79 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.2
Q ss_pred cEEEEEEccchhHHHhhccCCCCEEEE
Q 012425 234 SILRVIIDKGIEKHILHLLKIGKWVKL 260 (464)
Q Consensus 234 ~~l~V~~~~~~~~~~~~~lk~G~wV~l 260 (464)
.+++|++|...++.+.+.++.|+.|.+
T Consensus 53 ~~~~v~~wg~~Ae~~~~~l~KG~~V~V 79 (145)
T 1qvc_A 53 EWHRVVLFGKLAEVASEYLRKGSQVYI 79 (145)
T ss_dssp EEEEEEEETHHHHHHHHHCCTTCEEEE
T ss_pred EEEEEEEehHHHHHHHHhcCCCCEEEE
Confidence 368999999999988888999999953
No 55
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=24.56 E-value=74 Score=26.68 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=22.7
Q ss_pred EEEEEEccchhHHHhhccCCCCEEEE
Q 012425 235 ILRVIIDKGIEKHILHLLKIGKWVKL 260 (464)
Q Consensus 235 ~l~V~~~~~~~~~~~~~lk~G~wV~l 260 (464)
.++|++|...|+.+.+.++.|+.|.+
T Consensus 50 ~~~v~~wg~~Ae~~~~~l~KG~~V~V 75 (134)
T 2vw9_A 50 FIDARLFGRTAEIANQYLSKGSSVLI 75 (134)
T ss_dssp EEEEEEEHHHHHHHHHHCCTTCEEEE
T ss_pred EEEEEEEcHHHHHHHHhCCCCCEEEE
Confidence 58999999999888888999999854
No 56
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=24.28 E-value=74 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=23.3
Q ss_pred cEEEEEEccchhHHHhhccCCCCEEEE
Q 012425 234 SILRVIIDKGIEKHILHLLKIGKWVKL 260 (464)
Q Consensus 234 ~~l~V~~~~~~~~~~~~~lk~G~wV~l 260 (464)
.+++|++|...|+.+.+.++.|+.|.+
T Consensus 63 ~~~~v~~wg~~Ae~~~~~l~KG~~V~V 89 (153)
T 1z9f_A 63 DFFRIVTFGRLAEFARTYLTKGRLVLV 89 (153)
T ss_dssp EEEEEEEEHHHHHHHHHHCCTTCEEEE
T ss_pred EEEEEEEECHHHHHHHhhCCCCCEEEE
Confidence 358999999999988889999999854
No 57
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=23.72 E-value=93 Score=25.55 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=22.7
Q ss_pred cEEEEEEcc-chhHHHhhccCCCCEEEE
Q 012425 234 SILRVIIDK-GIEKHILHLLKIGKWVKL 260 (464)
Q Consensus 234 ~~l~V~~~~-~~~~~~~~~lk~G~wV~l 260 (464)
.+++|++|. ..|+.+.+.++.|+.|.+
T Consensus 54 ~~~~v~~wg~~~Ae~~~~~l~KG~~V~V 81 (124)
T 3ulp_A 54 DWHRIVVYDQNIVDLIDKYLRKGRRVYV 81 (124)
T ss_dssp EEEEEEECCHHHHHHHHHHCCTTCEEEE
T ss_pred EEEEEEEEEchHHHHHHhhcCCCCEEEE
Confidence 358999999 788888888999998854
No 58
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=23.45 E-value=1e+02 Score=24.73 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=52.5
Q ss_pred CeEEEEEEEEeeCCcccccCCceEEEEEEEeCCCC-CCC--------eEEEEeccCcCCCCCCCCCCCEEEEe-eEEEEE
Q 012425 22 QKVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHT-KDG--------ISVNIFAESMEKLPYIVSVGDIILLS-HVVMKA 91 (464)
Q Consensus 22 ~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~-~~g--------l~v~iF~~~~e~LP~v~~~GDII~l~-rvkv~~ 91 (464)
.+|-++|-+..--..+-|...--.++|+|.=.+.. ..| +.|.+|.+..| +-.+. .|+-|.+. +++..+
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~l~-KG~~v~veGrL~~rs 85 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQYR-QGDCATVEGFLAQKS 85 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HSTTC-TTCEEEEEEEEEESS
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhccC-CCCEEEEEEEEEECc
Confidence 46889999988766655654567888888643322 122 78889988766 76755 79988876 677788
Q ss_pred ECCeeEEe
Q 012425 92 HNKQAYAL 99 (464)
Q Consensus 92 ~~g~~~~~ 99 (464)
|++. +++
T Consensus 86 ~~~~-~lv 92 (103)
T 3k8a_A 86 RRSL-MPM 92 (103)
T ss_dssp SSCC-CEE
T ss_pred cCCc-cEE
Confidence 8776 443
No 59
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=22.22 E-value=83 Score=27.54 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.9
Q ss_pred cEEEEEEccchhHHHhhccCCCCEEEEe
Q 012425 234 SILRVIIDKGIEKHILHLLKIGKWVKLQ 261 (464)
Q Consensus 234 ~~l~V~~~~~~~~~~~~~lk~G~wV~l~ 261 (464)
.+++|++|...++.+.+.++.|+.|.+.
T Consensus 53 ~~~~v~~wg~~Ae~~~~~l~KG~~V~Ve 80 (168)
T 3afp_A 53 LFLRCNIWREAAENVAESLTRGARVIVT 80 (168)
T ss_dssp EEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred EEEEEEEehHHHHHHHHhCCCCCEEEEE
Confidence 3689999999999888999999999544
No 60
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=22.08 E-value=97 Score=26.80 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=22.6
Q ss_pred EEEEEEccchhHHHhhccCCCCEEEE
Q 012425 235 ILRVIIDKGIEKHILHLLKIGKWVKL 260 (464)
Q Consensus 235 ~l~V~~~~~~~~~~~~~lk~G~wV~l 260 (464)
+++|++|...++.+.+.++.|+-|.+
T Consensus 57 ~i~vv~wg~~Ae~~~~~l~KG~~V~V 82 (158)
T 3tqy_A 57 WHRIAFFNRLAEIVGEYLRKGSKIYI 82 (158)
T ss_dssp EEEEEEETHHHHHHHHHCCTTCEEEE
T ss_pred EEEEEEEhHHHHHHHhhcCCCCEEEE
Confidence 57999999988888888999999854
No 61
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=21.87 E-value=1.4e+02 Score=25.33 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=47.8
Q ss_pred eEEEEEEEEeeCCcccccCCceEEEEEEEeCC-CC-C---------CCeEEEEeccCcCCCCC-CCCCCCEEEEe-eEEE
Q 012425 23 KVSFVGVILEVGSPKQSKGTDSFCTIKVTDES-HT-K---------DGISVNIFAESMEKLPY-IVSVGDIILLS-HVVM 89 (464)
Q Consensus 23 ~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S-~~-~---------~gl~v~iF~~~~e~LP~-v~~~GDII~l~-rvkv 89 (464)
.|.++|-|..--..+.|....-.++|+|.=.+ .. . .=+.|.+|.+..+.+-. +. .||-|.+. +++.
T Consensus 7 ~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~-KG~~V~V~G~L~~ 85 (145)
T 1qvc_A 7 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLR-KGSQVYIEGQLRT 85 (145)
T ss_dssp EEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCC-TTCEEEEEEEEEE
T ss_pred EEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcC-CCCEEEEEEEEEe
Confidence 47888888765444455545678889995433 21 1 12899999876555544 55 69988885 8899
Q ss_pred EEECC
Q 012425 90 KAHNK 94 (464)
Q Consensus 90 ~~~~g 94 (464)
..|.+
T Consensus 86 ~~~~d 90 (145)
T 1qvc_A 86 RKWTD 90 (145)
T ss_dssp EEECS
T ss_pred eEEEC
Confidence 89964
No 62
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=21.25 E-value=1.5e+02 Score=23.75 Aligned_cols=72 Identities=10% Similarity=0.103 Sum_probs=47.9
Q ss_pred eEEEEEEEEeeCCcccccCCceEEEEEEEeCCCC-CCC--------eEEEEeccCcCCCCCCCCCCCEEEEe-eEEEEEE
Q 012425 23 KVSFVGVILEVGSPKQSKGTDSFCTIKVTDESHT-KDG--------ISVNIFAESMEKLPYIVSVGDIILLS-HVVMKAH 92 (464)
Q Consensus 23 ~vnviGVVvd~~~P~~trGtD~~~tl~I~D~S~~-~~g--------l~v~iF~~~~e~LP~v~~~GDII~l~-rvkv~~~ 92 (464)
+|-++|-++.--.-+-|...-=.++|+|.-.|.. ..| |.|.+|.+..|.+-... .|+-|.+. ++...+|
T Consensus 4 ~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~~~-kGs~V~VeGrL~trs~ 82 (101)
T 3en2_A 4 RLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDRIA-PGTVLECVGFLARKHR 82 (101)
T ss_dssp CEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTTSC-TTCEEEEEEEEEECC-
T ss_pred EEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhhcC-CCCEEEEEEEEEeCcC
Confidence 4889998888766665554457788888654432 222 89999998777677765 79988886 5566667
Q ss_pred CCe
Q 012425 93 NKQ 95 (464)
Q Consensus 93 ~g~ 95 (464)
+++
T Consensus 83 ~s~ 85 (101)
T 3en2_A 83 SSK 85 (101)
T ss_dssp ---
T ss_pred CCC
Confidence 665
No 63
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=20.96 E-value=98 Score=25.80 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=22.7
Q ss_pred cEEEEEEccchhHHHhhccCCCCEEE
Q 012425 234 SILRVIIDKGIEKHILHLLKIGKWVK 259 (464)
Q Consensus 234 ~~l~V~~~~~~~~~~~~~lk~G~wV~ 259 (464)
.+++|++|..-|+.+.+.++.|+-|.
T Consensus 63 ~w~~v~~wg~~Ae~~~~~l~KG~~V~ 88 (128)
T 4dam_A 63 NFFTVWANRQLATNASGSLAVGDPVV 88 (128)
T ss_dssp EEEEEEEEHHHHHHHHHHCCTTCEEE
T ss_pred EEEEEEEEcHHHHHHHHhcCCCCEEE
Confidence 35899999999998888999999884
No 64
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=20.02 E-value=1.5e+02 Score=23.53 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEEccchhHHHhhccCCCCEE
Q 012425 236 LRVIIDKGIEKHILHLLKIGKWV 258 (464)
Q Consensus 236 l~V~~~~~~~~~~~~~lk~G~wV 258 (464)
++|.+|...|+.+.+.++.|+-|
T Consensus 50 ~~vv~~g~~Ae~~~~~l~KG~~V 72 (104)
T 1txy_A 50 MPVIVSGHENQAITHSITVGSRI 72 (104)
T ss_dssp EEEEEESSTTHHHHTTCCTTCEE
T ss_pred EEEEEEhHHHHHHHhhCCCCCEE
Confidence 78999999999888899999988
Done!