BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012426
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 130/427 (30%), Positives = 199/427 (46%), Gaps = 52/427 (12%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIW 87
G + +AGWV T F+ + D + + +Q V+ + G + K+ + +S+
Sbjct: 16 GKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKKLGRESSVI 73
Query: 88 IQGNVVPSQGSKQKVELKVNKI-VLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGA 146
++G V + + E+ V K+ V+ S+ P ++ S E L HL RT A
Sbjct: 74 VEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASA 133
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206
+ +V+ L A ++ ++G+ + PI+ EG F +
Sbjct: 134 IMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLK---------------- 177
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+F+K A+L+ S QL E L V++ P+FRAE S T RHL E
Sbjct: 178 --------------YFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTE 223
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV--A 324
FW +E E A+ DL D M + Y+V+ L+ K++++ F D L+T+
Sbjct: 224 FWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFR--------DDLTTLKNT 275
Query: 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384
E F ++SY +AI++L V+WG DL ++ ER LTEE P V YPK I
Sbjct: 276 EPPFPRISYDEAIDILQSKGVN----VEWGDDLGADEERVLTEEF--DRPFFVYGYPKHI 329
Query: 385 KAFYMRQN-DDGRTVAAMDMLVPR-IGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYL 442
KAFYM+++ +D R V A DML P GE+IGGSQ ++ Y WYL
Sbjct: 330 KAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYL 389
Query: 443 DLRHYGS 449
DLR YGS
Sbjct: 390 DLRRYGS 396
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 117/438 (26%), Positives = 198/438 (45%), Gaps = 66/438 (15%)
Query: 29 GLMIVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G ++ GW +R A+ ++ F+E+ DGS QCV+ E + K L+T S+
Sbjct: 30 GKLVTFKGWAYHIRKARKTLIFVELRDGS--GYCQCVIFG-KELCEPEKVKLLTRECSLE 86
Query: 88 IQG--------NVVPSQGSKQKVELKVNKIVLVGKS--DPSYPIQKKRVSREFLRTKAHL 137
I G N P +E++V + ++G+S D I K + ++ + H+
Sbjct: 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNR-HI 145
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197
R+ V ++R+ + + K++ +N F I P I + CEG F +
Sbjct: 146 VIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL-------- 197
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAEN 257
+F +PA+LT S QL E+ +L + ++RAE
Sbjct: 198 ----------------------QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQ 235
Query: 258 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 317
S T RHLAE+ +E EL F +D + +L+ +V ++DN M I K +
Sbjct: 236 SRTVRHLAEYLHLEAELPFISFEDLL----NHLEDLVCTVIDNV---MAVHGDKIRK--M 286
Query: 318 DRLSTVAERDFVQLSYTDAIEL-----LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGG 372
+ + R F +++Y DAI+ ++ K FE+ G D+ + ER +T+E G
Sbjct: 287 NPHLKLPTRPFKRMTYADAIKYCNDHGILNKDKPFEY----GEDISEKPERQMTDEI--G 340
Query: 373 CPVIVSDYPKEIKAFYMRQNDDGRTVA-AMDMLVPRIGELIGGSQXXXXXXXXXXXXXXX 431
CP+ + +P ++KAFYM + + ++D+L+P +GE++GGS
Sbjct: 341 CPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKAN 400
Query: 432 KLNRDSYWWYLDLRHYGS 449
LN D Y+WY R YGS
Sbjct: 401 GLNPDPYYWYTQQRKYGS 418
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/429 (25%), Positives = 184/429 (42%), Gaps = 54/429 (12%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + D E + + + + +
Sbjct: 16 GQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPK--LRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTF 144
++G V + +K E+ KIV++ +++ P+ + L T+ + R R
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLNNRFMDLRRPEV 133
Query: 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPV 204
A+ ++R+++ A FF ENGFI I +P I A+ EG E F +
Sbjct: 134 MAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMK-------------- 179
Query: 205 DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRH 263
+FE+ AFL S QL E A+ L VY P FRAE NT+RH
Sbjct: 180 ----------------YFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRH 223
Query: 264 LAEFWMIEPELAF-ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLST 322
L E W I+ E+AF D ++ M+ + + + Y+ ++ +++D N +E+ +
Sbjct: 224 LNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKL----- 278
Query: 323 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSD 379
F ++SY A+E+L K+ + WG D+ +E ER L + E +
Sbjct: 279 ----PFPRVSYDKALEILGDLGKE----IPWGEDIDTEGERLLGKYMMENENAPLYFLYQ 330
Query: 380 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYW 439
YP E K FY+ + D+ + L R E+ G Q LN +S+
Sbjct: 331 YPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFE 390
Query: 440 WYLDLRHYG 448
+YL YG
Sbjct: 391 FYLKAFRYG 399
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 108/429 (25%), Positives = 183/429 (42%), Gaps = 54/429 (12%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + D E + + + + +
Sbjct: 16 GQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPK--LRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTF 144
++G V + +K E+ KIV++ +++ P+ + L T+ R R
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEV 133
Query: 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPV 204
A+ ++R+++ A FF ENGFI I +P I A+ EG E F +
Sbjct: 134 MAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMK-------------- 179
Query: 205 DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRH 263
+FE+ AFL S QL + A+ L VY P FRAE NT+RH
Sbjct: 180 ----------------YFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRH 223
Query: 264 LAEFWMIEPELAF-ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLST 322
L E W I+ E+AF D ++ M+ + + + Y+ ++ +++D N +E+ +
Sbjct: 224 LNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKL----- 278
Query: 323 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSD 379
F ++SY A+E+L K+ + WG D+ +E ER L + E +
Sbjct: 279 ----PFPRVSYDKALEILGDLGKE----IPWGEDIDTEGERLLGKYMMENENAPLYFLYQ 330
Query: 380 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYW 439
YP E K FY+ + D+ + L R E+ G Q LN +S+
Sbjct: 331 YPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFE 390
Query: 440 WYLDLRHYG 448
+YL YG
Sbjct: 391 FYLKAFRYG 399
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 109/429 (25%), Positives = 188/429 (43%), Gaps = 56/429 (13%)
Query: 32 IVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ + GW+ +R Q S+ F + DG+ + +M + YD + + T ++ I G
Sbjct: 14 VCIKGWIHRMRRQGKSLMFFILRDGTGFLQV-LLMDKLCQTYDALT---VNTECTVEIYG 69
Query: 91 NV--VPS-QGSKQKVELKVNKIVLVGKSDPSY--PIQKKRVSREFLRTKAHLRPRTNTFG 145
+ VP + + EL + ++G + P + + S + + HL R
Sbjct: 70 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAA 129
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205
A+ R+R A A + F G++ ++ P + + EG F
Sbjct: 130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLF------------------ 171
Query: 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265
+ D+F + +FLT S QL ET L +V+ ++RAE S T RHLA
Sbjct: 172 ------------NLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLA 219
Query: 266 EFWMIEPELAFADLKDDMACATAYLQYVVRYIL--DNCKEDMDFFNTWIEKGIIDRLSTV 323
E+ +E E F L D M + V +L + K+ ++ N +
Sbjct: 220 EYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQP--------- 270
Query: 324 AERDFVQLSYTDAIELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 381
ER F+++ Y DAI+ L + + EF +G D+ ER++T+ P++++ +P
Sbjct: 271 PERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI--NKPILLNRFP 328
Query: 382 KEIKAFYM-RQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWW 440
EIKAFYM R D ++D+L+P +GE++GGS +++ Y+W
Sbjct: 329 SEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYW 388
Query: 441 YLDLRHYGS 449
YLD R YG+
Sbjct: 389 YLDQRLYGT 397
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 109/429 (25%), Positives = 188/429 (43%), Gaps = 56/429 (13%)
Query: 32 IVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ + GW+ +R Q S+ F + DG+ + +M + YD + + T ++ I G
Sbjct: 16 VCIKGWIHRMRRQGKSLMFFILRDGTGFLQV-LLMDKLCQTYDALT---VNTECTVEIYG 71
Query: 91 NV--VPS-QGSKQKVELKVNKIVLVGKSDPSY--PIQKKRVSREFLRTKAHLRPRTNTFG 145
+ VP + + EL + ++G + P + + S + + HL R
Sbjct: 72 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAA 131
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205
A+ R+R A A + F G++ ++ P + + EG F
Sbjct: 132 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLF------------------ 173
Query: 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265
+ D+F + +FLT S QL ET L +V+ ++RAE S T RHLA
Sbjct: 174 ------------NLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLA 221
Query: 266 EFWMIEPELAFADLKDDMACATAYLQYVVRYIL--DNCKEDMDFFNTWIEKGIIDRLSTV 323
E+ +E E F L D M + V +L + K+ ++ N +
Sbjct: 222 EYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQP--------- 272
Query: 324 AERDFVQLSYTDAIELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 381
ER F+++ Y DAI+ L + + EF +G D+ ER++T+ P++++ +P
Sbjct: 273 PERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI--NKPILLNRFP 330
Query: 382 KEIKAFYM-RQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWW 440
EIKAFYM R D ++D+L+P +GE++GGS +++ Y+W
Sbjct: 331 SEIKAFYMQRDAKDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYW 390
Query: 441 YLDLRHYGS 449
YLD R YG+
Sbjct: 391 YLDQRLYGT 399
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/423 (25%), Positives = 174/423 (41%), Gaps = 51/423 (12%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G ++ AGWV LR FI + D + L + S A G Q +T + I +
Sbjct: 16 GKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNSSAFGISQE----LTQESVIQV 71
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRP---RTNTFG 145
+G V + + + +EL +I L+ K+ P+ + + T+ R R
Sbjct: 72 RGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQ 131
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205
AV ++++ A + + GFI I +P I AS EG + F V
Sbjct: 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVI--------------- 176
Query: 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265
+F K AFL S QL E A + V+ P +RAE S+T HLA
Sbjct: 177 ---------------YFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLA 221
Query: 266 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 325
EF ++ E+AFAD D M L +V+ I + KE++ N + I
Sbjct: 222 EFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKI-------- 273
Query: 326 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385
+L YT+AIE+L + + +K+G D+ + R L EE IV D+P + +
Sbjct: 274 -PIKRLKYTEAIEIL----RSKGYNIKFGDDIGTPELRILNEELKEDLYFIV-DWPSDAR 327
Query: 386 AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLR 445
FY + + ++ L+ + E++ GS L +S+ ++L
Sbjct: 328 PFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWF 387
Query: 446 HYG 448
YG
Sbjct: 388 DYG 390
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 95/403 (23%), Positives = 165/403 (40%), Gaps = 59/403 (14%)
Query: 58 LSNMQCVMTSDAEGYDQVKSG---LITTGASIWIQGNVVPSQGSKQKVELKVNKI-VLVG 113
L +Q ++ D G QV +G L +++ ++G VV + + +E++ ++ VL
Sbjct: 28 LGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSP 87
Query: 114 KSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWI 170
+P+ P ++ R + + L ++ R A +V+ AL ++ F I
Sbjct: 88 ALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEI 147
Query: 171 SSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230
+P + + EG F V D+FEK A+L
Sbjct: 148 FTPKVVRAGAEGGSGLFGV------------------------------DYFEKRAYLAQ 177
Query: 231 SGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACATAY 289
S QL + VY P +R E +TSRHL E+ ++ E+ F AD +D M A
Sbjct: 178 SPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEAL 237
Query: 290 LQYVVRYILDNCKEDMDFFN-TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE 348
L ++ L+ +++ TW +D +L++ +A +L K E
Sbjct: 238 LAEMLEEALNTAGDEIRLLGATW----------PSFPQDIPRLTHAEAKRIL-----KEE 282
Query: 349 FLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLV 405
G DL E ER L E E +G + V+ YP+ ++ FY +DG T + D+L
Sbjct: 283 LGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDG-TTRSFDLLF 341
Query: 406 PRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYG 448
R E+ G Q ++ +++ YL++ YG
Sbjct: 342 -RGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYG 383
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/452 (21%), Positives = 182/452 (40%), Gaps = 102/452 (22%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+K++K VD+ +E D ++ A T + +++ F+ + + L +Q ++ ++
Sbjct: 21 QKRVKFVDL----DEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKAN 74
Query: 69 AEGY---DQVK-SGLITTGASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSY 119
EG + VK +G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 75 KEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEAL 134
Query: 120 PIQKKRVSREFLRTKAHLRP---------------RTNTFGAVARVRNALAYATHKFFQE 164
PI + SR +A P RT T A+ R++ + ++
Sbjct: 135 PILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT 194
Query: 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224
F + +P + + EG F VT +F+
Sbjct: 195 KKFTEVHTPKLLGAPSEGGSSVFEVT------------------------------YFKG 224
Query: 225 PAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 283
A+L S Q N + A VY GP FRAENSNT RH+ EF ++ E+AF + +
Sbjct: 225 KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHE- 283
Query: 284 ACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER------------DFVQL 331
+LD E F + + K + V ++ V+L
Sbjct: 284 -------------VLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRL 330
Query: 332 SYTDAIELLIKAKKK---FEFLVKWGCDLQSEHERY---LTEEAFGGCPVIVSDYPKEIK 385
+Y + IE+L A K+ FE DL +E+E++ L + + I+ +P EI+
Sbjct: 331 TYKEGIEMLRAAGKEIGDFE-------DLSTENEKFLGKLVRDKYDTDFYILDKFPLEIR 383
Query: 386 AFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQ 416
FY M + + + D + R E++ G+Q
Sbjct: 384 PFYTMPDPANPKYSNSYDFFM-RGEEILSGAQ 414
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/452 (21%), Positives = 182/452 (40%), Gaps = 102/452 (22%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+K++K VD+ +E D ++ A T + +++ F+ + + L +Q ++ ++
Sbjct: 24 QKRVKFVDL----DEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKAN 77
Query: 69 AEGY---DQVK-SGLITTGASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSY 119
EG + VK +G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 78 KEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEAL 137
Query: 120 PIQKKRVSREFLRTKAHLRP---------------RTNTFGAVARVRNALAYATHKFFQE 164
PI + SR +A P RT T A+ R++ + ++
Sbjct: 138 PILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT 197
Query: 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224
F + +P + + EG F VT +F+
Sbjct: 198 KKFTEVHTPKLLGAPSEGGSSVFEVT------------------------------YFKG 227
Query: 225 PAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 283
A+L S Q N + A VY GP FRAENSNT RH+ EF ++ E+AF + +
Sbjct: 228 KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHE- 286
Query: 284 ACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER------------DFVQL 331
+LD E F + + K + V ++ V+L
Sbjct: 287 -------------VLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRL 333
Query: 332 SYTDAIELLIKAKKK---FEFLVKWGCDLQSEHERY---LTEEAFGGCPVIVSDYPKEIK 385
+Y + IE+L A K+ FE DL +E+E++ L + + I+ +P EI+
Sbjct: 334 TYKEGIEMLRAAGKEIGDFE-------DLSTENEKFLGKLVRDKYDTDFYILDKFPLEIR 386
Query: 386 AFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQ 416
FY M + + + D + R E++ G+Q
Sbjct: 387 PFYTMPDPANPKYSNSYDFFM-RGEEILSGAQ 417
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 114/291 (39%), Gaps = 63/291 (21%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
RT T A+ R+++A +F F+ I +P + EG F V
Sbjct: 236 RTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVK--------- 286
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENS 258
+F++ A+L S QL + V+ GP FRAENS
Sbjct: 287 ---------------------YFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENS 325
Query: 259 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 318
NT RHL EF ++ E+ ++ ++ ++ + +I D I K D
Sbjct: 326 NTRRHLTEFEGLDIEM---EIVENYHECIDVMEKLFTFIFDE-----------IPKRFPD 371
Query: 319 RLSTVAE---------RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE-- 367
L + + R F++L+Y +AIE+L + E + + D + E L E
Sbjct: 372 ELKVIRKQYPFEDLIYRPFLRLTYKEAIEML---RASGETIGDYD-DFTTPQEVKLGELI 427
Query: 368 -EAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQ 416
+ I+ +P I+ FY M DD + D+ V R E+ G+Q
Sbjct: 428 KAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFV-RGQEITSGAQ 477
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84
L VG + + GWV R S+ FI++ D + +Q D ++ S L
Sbjct: 11 LSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASEL-RNEF 67
Query: 85 SIWIQGNV-------VPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AH 136
I + G V + + ++E+ + + ++ ++D P+ V+ E R K +
Sbjct: 68 CIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRY 126
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
L R + R + +F ++GF+ I +P++T + EGA + L+PS
Sbjct: 127 LDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDY-----LVPS 180
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84
L VG + + GWV R S+ FI++ D + +Q D ++ S L
Sbjct: 11 LSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASEL-RNEF 67
Query: 85 SIWIQGNV-------VPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AH 136
I + G V + + ++E+ + + ++ ++D P+ V+ E R K +
Sbjct: 68 CIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRY 126
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
L R + R + +F ++GF+ I +P++T + EGA + L+PS
Sbjct: 127 LDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDY-----LVPS 180
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 9/170 (5%)
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301
L VY G FR E +T RH EF M+E A+AD +D M + ++ +L
Sbjct: 241 GLEKVYEIGRVFRNEGIST-RHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTT 299
Query: 302 K-----EDMDFFNTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGC 355
K +D W ++D + DF Q+S +A EL + + + +G
Sbjct: 300 KIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGH 359
Query: 356 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLV 405
+ E+ + ++ P + +P EI + DD R ++ +
Sbjct: 360 IVNEFFEQKVEDKLI--QPTFIYGHPVEISPLAKKNPDDPRFTDRFELFI 407
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 108/282 (38%), Gaps = 41/282 (14%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY---DQVKSGLITTGA 84
VG +V+ GWV R + F+++ D L +Q V + Y ++V+ +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAERVRPEWVVRAK 72
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKI-VLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNT 143
+ + + +VE++++ + VL P +P+ E LR +
Sbjct: 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRY 132
Query: 144 FGAVA-------RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS 196
R+R+ + A F GF+ + +P +T S EGA + L+P
Sbjct: 133 LDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARD-----FLVPYR 187
Query: 197 REAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAE 256
E A+P+ S F++ L V+G L + FR E
Sbjct: 188 HEPGL--FYALPQ--------SPQLFKQ--MLMVAG----------LDRYFQIARCFRDE 225
Query: 257 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 298
+ R +F ++ E++F +++D + + +V R L
Sbjct: 226 DLRADRQ-PDFTQLDLEMSFVEVEDVLELNERLMAHVFREAL 266
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 27/181 (14%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS---DAEGYDQVKSG 78
E L+ L + +AG + R +F V DGS +Q +T AE YD K
Sbjct: 79 KEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGS--GQIQFFVTPADVGAETYDAFKK- 135
Query: 79 LITTGASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRT 133
W G++V ++G +K ++ +K ++ L+ K+ P + ++ + R
Sbjct: 136 --------WDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRY 187
Query: 134 KAH-----LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFC 188
+ + P T T R R + KF + F+ + +P++ A + F
Sbjct: 188 RQRYVDLIVTPETRT---TFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFV 244
Query: 189 V 189
Sbjct: 245 T 245
>pdb|2LNA|A Chain A, Solution Nmr Structure Of The Mitochondrial Inner Membrane
Domain (Residues 164-251), Ftsh_ext, From The
Paraplegin-Like Protein Afg3l2 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr6741a
Length = 99
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYT 334
DF N ++ KG++DRL V +R FV++++T
Sbjct: 22 DFVNNYLSKGVVDRLEVVNKR-FVRVTFT 49
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 225 PAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 283
PAFL Q + A L+N + +T H + FWM P +A DL+DD+
Sbjct: 120 PAFLLPLNQEDNTNLARVLTN-----------HIHTGHHSSMFWMRVPLVAPEDLRDDI 167
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR|A Chain A, Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|2DMR|A Chain A, Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
pdb|3DMR|A Chain A, Structure Of Dmso Reductase From Rhodobacter Capsulatus At
Ph 7.0
Length = 823
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 311 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF 370
++EKG+ ST DFV++S+ A++L+ K+ E E Y E F
Sbjct: 106 FLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVE-------------ETYGPEGVF 152
Query: 371 GGC 373
GG
Sbjct: 153 GGS 155
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
Length = 823
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 311 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF 370
++EKG+ ST DFV++S+ A++L+ K+ E E Y E F
Sbjct: 106 FLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVE-------------ETYGPEGVF 152
Query: 371 GGC 373
GG
Sbjct: 153 GGS 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,611,258
Number of Sequences: 62578
Number of extensions: 550468
Number of successful extensions: 1130
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 27
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)