Query 012426
Match_columns 464
No_of_seqs 210 out of 1370
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02603 asparaginyl-tRNA synt 100.0 4E-105 9E-110 842.8 41.6 460 5-464 83-553 (565)
2 COG0017 AsnS Aspartyl/asparagi 100.0 4E-103 9E-108 792.3 35.7 405 10-464 3-423 (435)
3 PLN02532 asparagine-tRNA synth 100.0 8.1E-99 2E-103 796.2 38.0 455 5-464 23-621 (633)
4 PTZ00425 asparagine-tRNA ligas 100.0 2.9E-98 6E-103 788.8 40.5 451 11-464 54-574 (586)
5 PLN02221 asparaginyl-tRNA synt 100.0 2E-98 4E-103 791.7 37.7 455 5-464 26-560 (572)
6 KOG0554 Asparaginyl-tRNA synth 100.0 1.4E-97 3E-102 727.1 30.0 405 26-464 17-434 (446)
7 TIGR00457 asnS asparaginyl-tRN 100.0 7.8E-97 2E-101 770.6 37.6 425 13-464 3-441 (453)
8 PRK03932 asnC asparaginyl-tRNA 100.0 2.8E-95 6E-100 759.7 38.1 423 11-464 3-438 (450)
9 TIGR00458 aspS_arch aspartyl-t 100.0 1.2E-91 2.5E-96 728.1 36.5 396 13-464 2-416 (428)
10 PRK05159 aspC aspartyl-tRNA sy 100.0 4.1E-91 8.9E-96 726.9 35.9 401 10-464 3-425 (437)
11 PTZ00401 aspartyl-tRNA synthet 100.0 3.6E-89 7.8E-94 721.5 38.2 408 11-464 65-538 (550)
12 PLN02850 aspartate-tRNA ligase 100.0 5E-89 1.1E-93 720.4 37.2 405 10-464 68-518 (530)
13 TIGR00499 lysS_bact lysyl-tRNA 100.0 8.2E-88 1.8E-92 708.5 38.1 420 6-464 26-486 (496)
14 PLN02502 lysyl-tRNA synthetase 100.0 1.6E-87 3.5E-92 709.4 39.0 419 6-464 82-543 (553)
15 PRK12445 lysyl-tRNA synthetase 100.0 1.1E-86 2.3E-91 699.9 38.7 419 6-464 38-495 (505)
16 PRK00484 lysS lysyl-tRNA synth 100.0 9.1E-87 2E-91 700.5 37.5 419 6-464 27-481 (491)
17 PTZ00417 lysine-tRNA ligase; P 100.0 1.2E-85 2.7E-90 697.1 36.5 421 6-464 106-575 (585)
18 PTZ00385 lysyl-tRNA synthetase 100.0 1.2E-84 2.6E-89 691.0 38.4 424 3-464 78-556 (659)
19 COG1190 LysU Lysyl-tRNA synthe 100.0 2.9E-84 6.3E-89 657.4 28.8 419 6-464 34-492 (502)
20 KOG0556 Aspartyl-tRNA syntheta 100.0 1.2E-81 2.6E-86 614.5 27.7 403 12-463 71-520 (533)
21 PRK02983 lysS lysyl-tRNA synth 100.0 8.7E-81 1.9E-85 702.9 38.6 412 6-464 634-1084(1094)
22 TIGR00459 aspS_bact aspartyl-t 100.0 4.7E-77 1E-81 631.4 36.6 406 10-464 2-547 (583)
23 KOG1885 Lysyl-tRNA synthetase 100.0 1.1E-78 2.4E-83 603.1 19.0 419 5-463 77-547 (560)
24 KOG0555 Asparaginyl-tRNA synth 100.0 1.2E-74 2.7E-79 563.2 24.3 392 26-464 120-533 (545)
25 PLN02903 aminoacyl-tRNA ligase 100.0 5.3E-73 1.2E-77 602.4 35.9 411 8-464 57-615 (652)
26 COG0173 AspS Aspartyl-tRNA syn 100.0 4.5E-73 9.8E-78 578.1 31.1 392 10-464 2-550 (585)
27 PRK00476 aspS aspartyl-tRNA sy 100.0 2E-72 4.4E-77 600.6 33.9 407 10-464 4-552 (588)
28 cd00776 AsxRS_core Asx tRNA sy 100.0 1.7E-72 3.7E-77 565.7 22.7 300 126-464 2-314 (322)
29 PRK12820 bifunctional aspartyl 100.0 4.8E-71 1E-75 592.8 34.3 407 9-464 4-568 (706)
30 PRK06462 asparagine synthetase 100.0 4.5E-69 9.7E-74 543.0 21.6 297 126-464 8-323 (335)
31 PF00152 tRNA-synt_2: tRNA syn 100.0 2E-69 4.3E-74 548.3 16.8 296 128-464 2-327 (335)
32 TIGR00462 genX lysyl-tRNA synt 100.0 3.4E-63 7.3E-68 494.3 25.2 276 148-464 1-301 (304)
33 cd00775 LysRS_core Lys_tRNA sy 100.0 6.7E-62 1.5E-66 490.0 24.2 279 142-464 2-321 (329)
34 cd00669 Asp_Lys_Asn_RS_core As 100.0 1.7E-59 3.6E-64 459.5 21.4 242 148-464 1-261 (269)
35 PRK09350 poxB regulator PoxA; 100.0 5.9E-58 1.3E-62 457.0 25.0 281 145-464 2-306 (306)
36 KOG2411 Aspartyl-tRNA syntheta 100.0 4.1E-56 8.8E-61 444.3 25.7 393 9-464 33-591 (628)
37 cd00777 AspRS_core Asp tRNA sy 100.0 3.6E-54 7.9E-59 424.1 19.4 252 148-464 1-272 (280)
38 COG2269 Truncated, possibly in 100.0 3E-49 6.6E-54 373.4 17.2 281 144-463 12-313 (322)
39 cd04317 EcAspRS_like_N EcAspRS 99.9 1.4E-21 2.9E-26 172.9 14.1 122 11-143 2-134 (135)
40 cd04319 PhAsnRS_like_N PhAsnRS 99.8 3.4E-20 7.4E-25 156.2 13.0 101 31-137 1-103 (103)
41 cd04316 ND_PkAspRS_like_N ND_P 99.8 3.6E-19 7.9E-24 151.3 13.0 102 13-124 2-106 (108)
42 cd04322 LysRS_N LysRS_N: N-ter 99.8 3.7E-19 8E-24 151.2 12.7 104 31-139 1-108 (108)
43 cd04320 AspRS_cyto_N AspRS_cyt 99.7 4E-17 8.8E-22 137.2 12.2 89 31-123 1-100 (102)
44 cd04318 EcAsnRS_like_N EcAsnRS 99.7 4.9E-17 1.1E-21 131.2 12.1 82 31-114 1-82 (82)
45 cd04321 ScAspRS_mt_like_N ScAs 99.7 1.1E-16 2.4E-21 130.3 11.3 81 31-114 1-86 (86)
46 cd04323 AsnRS_cyto_like_N AsnR 99.7 3.2E-16 6.9E-21 127.0 11.4 80 31-114 1-84 (84)
47 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.7 8.9E-16 1.9E-20 124.7 11.5 80 31-114 1-85 (85)
48 PRK09537 pylS pyrolysyl-tRNA s 99.2 9.9E-11 2.1E-15 120.2 9.5 128 140-292 190-332 (417)
49 cd00768 class_II_aaRS-like_cor 99.0 3.5E-10 7.6E-15 106.2 6.9 116 150-292 1-131 (211)
50 KOG2784 Phenylalanyl-tRNA synt 99.0 1.7E-10 3.8E-15 113.4 4.3 144 144-293 211-384 (483)
51 PF01336 tRNA_anti-codon: OB-f 99.0 6.3E-09 1.4E-13 81.5 11.0 74 32-112 1-75 (75)
52 PLN02853 Probable phenylalanyl 98.9 8.2E-10 1.8E-14 115.1 3.4 146 145-293 217-393 (492)
53 TIGR02367 PylS pyrrolysyl-tRNA 98.9 1.2E-08 2.5E-13 105.0 10.5 121 145-291 236-367 (453)
54 PTZ00326 phenylalanyl-tRNA syn 98.7 1.9E-08 4.1E-13 105.5 8.1 146 145-292 225-407 (494)
55 PF01409 tRNA-synt_2d: tRNA sy 98.7 3.5E-08 7.5E-13 95.8 8.1 130 148-294 16-154 (247)
56 PRK04172 pheS phenylalanyl-tRN 98.7 1.4E-08 3.1E-13 108.2 5.7 149 143-293 227-401 (489)
57 COG0016 PheS Phenylalanyl-tRNA 98.7 5.8E-08 1.3E-12 97.0 8.3 129 146-295 108-245 (335)
58 cd00496 PheRS_alpha_core Pheny 98.6 2.5E-07 5.4E-12 88.4 9.4 120 153-293 5-131 (218)
59 PRK00488 pheS phenylalanyl-tRN 98.6 1.2E-07 2.5E-12 95.3 7.0 126 147-295 106-238 (339)
60 PTZ00213 asparagine synthetase 98.5 5.4E-06 1.2E-10 81.7 17.1 247 147-463 7-331 (348)
61 PF00587 tRNA-synt_2b: tRNA sy 98.4 6.7E-07 1.4E-11 82.2 7.4 116 150-295 1-136 (173)
62 cd00645 AsnA Asparagine synthe 98.4 1.2E-05 2.7E-10 78.3 16.0 257 155-463 4-295 (309)
63 PLN02788 phenylalanine-tRNA sy 98.4 9.3E-07 2E-11 90.9 8.8 120 151-295 70-212 (402)
64 PRK05425 asparagine synthetase 98.4 1.3E-05 2.9E-10 78.8 16.2 262 149-463 9-305 (327)
65 cd00773 HisRS-like_core Class 98.3 2.7E-06 5.8E-11 83.5 9.8 101 148-278 2-116 (261)
66 TIGR00468 pheS phenylalanyl-tR 98.3 4E-06 8.7E-11 83.7 10.5 126 147-293 70-201 (294)
67 cd00670 Gly_His_Pro_Ser_Thr_tR 98.1 1.1E-05 2.3E-10 77.5 9.1 105 149-278 3-125 (235)
68 cd00778 ProRS_core_arch_euk Pr 98.1 6.3E-06 1.4E-10 81.0 7.4 125 144-293 28-171 (261)
69 TIGR00442 hisS histidyl-tRNA s 98.0 1.8E-05 3.8E-10 82.4 9.4 105 144-278 10-131 (397)
70 cd00779 ProRS_core_prok Prolyl 98.0 2.5E-05 5.3E-10 76.5 9.2 118 145-291 28-163 (255)
71 cd00772 ProRS_core Prolyl-tRNA 98.0 4.7E-05 1E-09 74.9 11.1 122 145-292 29-170 (264)
72 TIGR00669 asnA aspartate--ammo 98.0 0.00037 8.1E-09 68.6 16.2 265 148-463 5-312 (330)
73 PRK00037 hisS histidyl-tRNA sy 97.9 3.9E-05 8.5E-10 80.2 9.6 104 144-278 14-132 (412)
74 TIGR00409 proS_fam_II prolyl-t 97.8 7.8E-05 1.7E-09 80.9 9.3 126 143-297 42-188 (568)
75 cd00771 ThrRS_core Threonyl-tR 97.8 0.0001 2.2E-09 73.8 9.2 116 145-291 27-161 (298)
76 TIGR00408 proS_fam_I prolyl-tR 97.7 9.2E-05 2E-09 78.8 8.8 123 145-292 35-176 (472)
77 PRK09194 prolyl-tRNA synthetas 97.7 0.00017 3.6E-09 78.6 10.9 126 143-297 42-188 (565)
78 cd00774 GlyRS-like_core Glycyl 97.7 5.4E-05 1.2E-09 74.1 6.3 101 145-276 29-142 (254)
79 TIGR00414 serS seryl-tRNA synt 97.7 0.00012 2.7E-09 76.6 8.7 117 144-293 169-307 (418)
80 PRK12293 hisZ ATP phosphoribos 97.7 0.00021 4.6E-09 70.9 9.9 112 144-293 15-139 (281)
81 PRK05431 seryl-tRNA synthetase 97.7 0.0001 2.2E-09 77.4 7.9 116 145-293 167-305 (425)
82 TIGR00418 thrS threonyl-tRNA s 97.7 0.00016 3.5E-09 78.8 9.4 116 143-290 195-331 (563)
83 PRK12305 thrS threonyl-tRNA sy 97.7 0.0002 4.3E-09 78.3 10.1 123 143-296 201-343 (575)
84 cd00770 SerRS_core Seryl-tRNA 97.6 0.00014 3E-09 72.8 7.9 117 144-293 48-186 (297)
85 PRK12444 threonyl-tRNA synthet 97.6 0.00022 4.9E-09 78.8 9.6 120 144-293 270-407 (639)
86 PRK08661 prolyl-tRNA synthetas 97.6 0.00015 3.2E-09 77.3 7.8 122 144-291 40-180 (477)
87 TIGR00443 hisZ_biosyn_reg ATP 97.6 0.00025 5.4E-09 71.6 8.8 103 145-278 5-121 (314)
88 CHL00201 syh histidine-tRNA sy 97.5 0.00034 7.3E-09 73.7 9.5 118 144-291 14-153 (430)
89 PRK12292 hisZ ATP phosphoribos 97.5 0.00035 7.5E-09 72.7 9.3 119 144-293 13-151 (391)
90 PF13393 tRNA-synt_His: Histid 97.5 0.00045 9.7E-09 69.4 9.8 116 144-291 6-139 (311)
91 PRK00413 thrS threonyl-tRNA sy 97.5 0.00042 9.1E-09 76.7 10.4 117 143-290 265-401 (638)
92 PRK12325 prolyl-tRNA synthetas 97.5 0.00044 9.6E-09 73.0 9.9 119 143-292 42-180 (439)
93 PLN02908 threonyl-tRNA synthet 97.5 0.00038 8.3E-09 77.5 9.1 122 143-295 316-456 (686)
94 PLN02530 histidine-tRNA ligase 97.5 0.00057 1.2E-08 73.1 10.0 116 143-290 79-214 (487)
95 PRK12420 histidyl-tRNA synthet 97.4 0.00064 1.4E-08 71.5 9.2 119 143-293 13-152 (423)
96 PLN02972 Histidyl-tRNA synthet 97.4 0.0007 1.5E-08 74.9 9.4 118 143-292 336-470 (763)
97 PRK14799 thrS threonyl-tRNA sy 97.3 0.00068 1.5E-08 73.2 9.0 122 143-295 163-303 (545)
98 PRK12421 ATP phosphoribosyltra 97.3 0.0011 2.3E-08 69.0 10.0 119 144-293 17-154 (392)
99 PLN02837 threonine-tRNA ligase 97.2 0.0009 2E-08 73.6 8.4 122 143-294 242-382 (614)
100 PRK03991 threonyl-tRNA synthet 97.1 0.0017 3.8E-08 71.1 9.1 124 144-297 223-366 (613)
101 COG0124 HisS Histidyl-tRNA syn 97.1 0.0026 5.7E-08 66.5 9.9 119 143-293 13-154 (429)
102 cd04489 ExoVII_LU_OBF ExoVII_L 97.0 0.01 2.2E-07 46.6 10.6 73 32-110 2-75 (78)
103 cd04487 RecJ_OBF2_like RecJ_OB 96.9 0.0072 1.6E-07 47.5 8.8 73 32-112 1-73 (73)
104 cd04478 RPA2_DBD_D RPA2_DBD_D: 96.9 0.016 3.4E-07 47.5 10.9 76 32-114 2-79 (95)
105 PRK04173 glycyl-tRNA synthetas 96.9 0.0024 5.3E-08 67.7 7.5 48 245-295 188-239 (456)
106 TIGR00470 sepS O-phosphoseryl- 96.9 0.0011 2.3E-08 69.0 4.5 50 244-293 208-259 (533)
107 PRK12295 hisZ ATP phosphoribos 96.9 0.0043 9.3E-08 64.1 8.9 107 152-293 8-133 (373)
108 PLN02678 seryl-tRNA synthetase 96.6 0.0056 1.2E-07 64.5 8.0 34 146-179 172-205 (448)
109 cd04483 hOBFC1_like hOBFC1_lik 96.4 0.04 8.7E-07 45.3 10.0 70 34-110 2-90 (92)
110 COG0442 ProS Prolyl-tRNA synth 96.3 0.0099 2.1E-07 63.2 7.1 119 144-291 43-179 (500)
111 PF13742 tRNA_anti_2: OB-fold 96.2 0.035 7.6E-07 46.2 8.9 77 29-110 21-98 (99)
112 PLN02320 seryl-tRNA synthetase 96.2 0.01 2.2E-07 63.1 6.8 119 147-293 232-368 (502)
113 TIGR00469 pheS_mito phenylalan 96.1 0.021 4.5E-07 59.9 8.6 32 245-277 135-166 (460)
114 cd04482 RPA2_OBF_like RPA2_OBF 96.1 0.053 1.2E-06 44.4 9.3 74 32-115 1-77 (91)
115 COG0172 SerS Seryl-tRNA synthe 96.1 0.011 2.4E-07 61.5 6.3 114 147-291 173-306 (429)
116 TIGR00415 serS_MJ seryl-tRNA s 96.1 0.028 6E-07 59.7 9.2 143 145-293 220-387 (520)
117 PF10451 Stn1: Telomere regula 95.7 0.075 1.6E-06 52.0 10.0 78 29-114 66-149 (256)
118 PRK12294 hisZ ATP phosphoribos 95.6 0.068 1.5E-06 52.8 9.2 34 146-179 5-38 (272)
119 PRK00960 seryl-tRNA synthetase 95.4 0.019 4.2E-07 61.4 5.2 143 144-292 219-386 (517)
120 cd03524 RPA2_OBF_family RPA2_O 95.4 0.18 3.9E-06 37.9 9.2 68 33-109 1-73 (75)
121 cd04490 PolII_SU_OBF PolII_SU_ 95.1 0.29 6.2E-06 39.0 9.8 57 32-94 2-62 (79)
122 COG1107 Archaea-specific RecJ- 95.0 0.06 1.3E-06 57.2 7.1 79 26-112 210-288 (715)
123 PF04076 BOF: Bacterial OB fol 95.0 0.18 4E-06 42.3 8.6 81 11-110 22-102 (103)
124 KOG2324 Prolyl-tRNA synthetase 94.9 0.089 1.9E-06 53.0 7.7 125 144-298 48-191 (457)
125 COG3111 Periplasmic protein wi 94.9 0.22 4.8E-06 42.6 8.8 73 27-112 55-127 (128)
126 COG5235 RFA2 Single-stranded D 94.8 0.17 3.7E-06 47.1 8.6 97 9-112 39-143 (258)
127 TIGR00156 conserved hypothetic 94.7 0.26 5.6E-06 42.8 9.2 80 12-110 46-125 (126)
128 cd04485 DnaE_OBF DnaE_OBF: A s 94.6 0.25 5.4E-06 38.5 8.3 71 34-113 2-78 (84)
129 PF12869 tRNA_anti-like: tRNA_ 94.6 0.15 3.3E-06 45.0 7.7 82 12-95 45-132 (144)
130 PRK07373 DNA polymerase III su 94.5 0.26 5.6E-06 52.2 10.5 78 27-112 278-360 (449)
131 COG0441 ThrS Threonyl-tRNA syn 94.4 0.068 1.5E-06 58.1 5.9 117 144-297 216-357 (589)
132 COG2502 AsnA Asparagine synthe 94.4 2 4.4E-05 41.5 14.9 208 228-463 69-312 (330)
133 cd04492 YhaM_OBF_like YhaM_OBF 94.0 1.1 2.4E-05 35.0 10.9 62 45-115 18-79 (83)
134 PRK10053 hypothetical protein; 93.9 0.43 9.2E-06 41.7 8.8 80 12-110 50-129 (130)
135 PRK09616 pheT phenylalanyl-tRN 93.8 0.2 4.3E-06 54.6 8.1 116 148-292 358-488 (552)
136 PRK05672 dnaE2 error-prone DNA 93.4 0.35 7.6E-06 56.4 9.6 79 28-114 952-1033(1046)
137 PRK07374 dnaE DNA polymerase I 92.9 0.45 9.8E-06 56.0 9.6 77 28-112 999-1080(1170)
138 PRK06826 dnaE DNA polymerase I 92.6 0.53 1.2E-05 55.4 9.6 79 28-113 990-1073(1151)
139 COG4085 Predicted RNA-binding 92.4 0.92 2E-05 41.9 8.9 77 26-107 48-128 (204)
140 PF08661 Rep_fac-A_3: Replicat 92.4 0.61 1.3E-05 39.4 7.4 58 27-96 16-73 (109)
141 PRK05673 dnaE DNA polymerase I 92.0 0.58 1.3E-05 55.1 9.0 79 28-114 976-1059(1135)
142 cd04479 RPA3 RPA3: A subfamily 91.8 1.8 3.8E-05 36.1 9.4 69 26-114 12-80 (101)
143 PRK15491 replication factor A; 91.8 1.2 2.6E-05 46.1 10.1 92 12-118 58-159 (374)
144 PF03100 CcmE: CcmE; InterPro 91.8 2.9 6.2E-05 36.6 11.1 85 12-118 37-126 (131)
145 PRK06920 dnaE DNA polymerase I 91.5 0.86 1.9E-05 53.4 9.6 77 28-112 942-1023(1107)
146 PRK14699 replication factor A; 91.4 1.4 3E-05 47.1 10.5 87 29-122 67-163 (484)
147 cd00769 PheRS_beta_core Phenyl 90.8 0.8 1.7E-05 42.8 7.2 26 153-178 4-29 (198)
148 PRK07279 dnaE DNA polymerase I 89.3 1.6 3.6E-05 50.7 9.3 74 29-110 884-963 (1034)
149 PRK06461 single-stranded DNA-b 88.9 4.2 9.1E-05 35.4 9.7 84 11-114 4-100 (129)
150 cd04484 polC_OBF polC_OBF: A s 88.4 11 0.00024 30.0 11.1 73 32-110 2-80 (82)
151 PRK07217 replication factor A; 87.9 7.8 0.00017 38.9 11.9 84 28-121 81-167 (311)
152 PRK13480 3'-5' exoribonuclease 87.3 4.3 9.4E-05 41.0 9.9 79 29-116 11-94 (314)
153 cd04491 SoSSB_OBF SoSSB_OBF: A 87.0 6 0.00013 31.2 8.8 55 45-110 22-77 (82)
154 PF03590 AsnA: Aspartate-ammon 86.1 4.2 9E-05 39.1 8.4 125 152-298 7-143 (244)
155 cd04488 RecG_wedge_OBF RecG_we 86.0 10 0.00022 28.5 9.4 57 34-96 2-62 (75)
156 KOG3108 Single-stranded DNA-bi 85.7 5.6 0.00012 39.1 9.4 76 30-112 69-145 (265)
157 COG3705 HisZ ATP phosphoribosy 85.5 1.9 4.2E-05 44.7 6.4 99 147-277 16-128 (390)
158 COG1570 XseA Exonuclease VII, 85.1 4.4 9.4E-05 42.6 8.8 76 29-111 23-100 (440)
159 KOG1936 Histidyl-tRNA syntheta 85.0 2.1 4.6E-05 44.4 6.3 117 146-290 72-203 (518)
160 PRK02801 primosomal replicatio 83.9 14 0.00031 30.6 9.9 48 61-112 50-100 (101)
161 KOG1035 eIF-2alpha kinase GCN2 83.0 2.2 4.7E-05 49.7 6.0 115 147-292 931-1054(1351)
162 cd04474 RPA1_DBD_A RPA1_DBD_A: 82.5 8.6 0.00019 32.0 8.1 74 30-107 10-97 (104)
163 PRK10917 ATP-dependent DNA hel 82.4 11 0.00024 42.2 11.4 77 27-111 57-136 (681)
164 PRK00286 xseA exodeoxyribonucl 82.1 8.8 0.00019 40.5 10.0 79 29-113 23-102 (438)
165 PRK07218 replication factor A; 81.9 11 0.00025 39.6 10.4 83 11-114 58-148 (423)
166 KOG2509 Seryl-tRNA synthetase 81.7 0.6 1.3E-05 48.3 0.9 34 145-178 182-215 (455)
167 PRK13150 cytochrome c-type bio 81.4 23 0.0005 32.1 10.8 75 27-119 55-134 (159)
168 COG1571 Predicted DNA-binding 81.0 7.3 0.00016 40.6 8.5 74 30-114 267-343 (421)
169 PRK12366 replication factor A; 81.0 9.3 0.0002 42.5 9.9 81 28-114 290-382 (637)
170 PRK13165 cytochrome c-type bio 80.9 23 0.00051 32.1 10.7 75 27-119 55-134 (160)
171 TIGR00237 xseA exodeoxyribonuc 80.6 9.9 0.00022 40.2 9.6 76 30-112 18-95 (432)
172 PRK13254 cytochrome c-type bio 80.3 27 0.00059 31.2 10.9 75 27-119 49-127 (148)
173 PRK14699 replication factor A; 80.2 16 0.00034 39.2 11.0 83 29-117 176-268 (484)
174 cd05694 S1_Rrp5_repeat_hs2_sc2 79.6 12 0.00025 29.2 7.4 47 33-89 7-53 (74)
175 PRK07211 replication factor A; 78.9 14 0.00031 39.5 10.0 72 30-109 64-146 (485)
176 PRK15491 replication factor A; 78.1 18 0.0004 37.4 10.4 80 30-116 177-267 (374)
177 PRK00036 primosomal replicatio 76.6 9.6 0.00021 32.2 6.4 52 60-115 48-99 (107)
178 PRK07218 replication factor A; 76.3 28 0.00062 36.6 11.3 76 29-116 172-255 (423)
179 PRK07080 hypothetical protein; 75.1 3 6.5E-05 41.8 3.5 50 244-294 152-202 (317)
180 PRK14894 glycyl-tRNA synthetas 74.9 2.9 6.2E-05 44.7 3.5 32 147-178 39-72 (539)
181 TIGR00471 pheT_arch phenylalan 74.5 14 0.00031 40.2 9.0 117 148-292 361-490 (551)
182 PF15072 DUF4539: Domain of un 74.4 15 0.00034 29.7 6.9 54 32-91 5-59 (86)
183 PRK07459 single-stranded DNA-b 74.3 30 0.00066 29.7 9.2 36 80-115 62-104 (121)
184 PRK12366 replication factor A; 72.3 19 0.00041 40.1 9.3 82 11-108 63-154 (637)
185 PRK06386 replication factor A; 72.0 53 0.0012 33.8 11.8 78 29-120 117-202 (358)
186 TIGR00643 recG ATP-dependent D 70.9 24 0.00051 39.2 9.7 63 27-96 30-97 (630)
187 cd00673 AlaRS_core Alanyl-tRNA 70.4 12 0.00027 35.9 6.4 102 152-292 2-109 (232)
188 PRK07135 dnaE DNA polymerase I 70.3 14 0.0003 43.1 7.8 62 29-96 897-962 (973)
189 COG0423 GRS1 Glycyl-tRNA synth 69.6 2.2 4.9E-05 45.4 1.3 40 148-187 40-84 (558)
190 PRK13159 cytochrome c-type bio 69.4 73 0.0016 28.8 10.6 74 27-119 49-127 (155)
191 COG0016 PheS Phenylalanyl-tRNA 69.0 2.1 4.4E-05 43.5 0.8 53 401-463 266-324 (335)
192 PRK08402 replication factor A; 68.7 38 0.00082 34.9 9.9 87 12-113 63-160 (355)
193 cd04486 YhcR_OBF_like YhcR_OBF 68.2 46 0.00099 26.2 8.3 68 33-113 1-76 (78)
194 COG3689 Predicted membrane pro 68.2 24 0.00052 34.5 7.8 87 26-118 172-265 (271)
195 PRK07211 replication factor A; 67.2 39 0.00084 36.3 9.9 79 29-116 171-260 (485)
196 PLN02265 probable phenylalanyl 65.9 22 0.00048 39.2 8.2 31 148-178 396-426 (597)
197 TIGR00617 rpa1 replication fac 63.9 48 0.001 36.8 10.2 91 12-116 181-286 (608)
198 PLN02734 glycyl-tRNA synthetas 61.9 3.4 7.4E-05 45.9 0.9 41 147-187 108-152 (684)
199 TIGR00389 glyS_dimeric glycyl- 60.1 3 6.6E-05 45.2 0.1 32 147-178 36-68 (551)
200 PF12857 TOBE_3: TOBE-like dom 59.4 54 0.0012 24.1 6.8 50 33-89 6-56 (58)
201 PRK04036 DNA polymerase II sma 58.6 35 0.00076 36.9 7.9 63 28-94 152-216 (504)
202 PRK06752 single-stranded DNA-b 58.2 27 0.0006 29.4 5.7 36 80-115 65-106 (112)
203 cd04496 SSB_OBF SSB_OBF: A sub 57.0 30 0.00065 27.8 5.6 50 60-112 45-100 (100)
204 cd04452 S1_IF2_alpha S1_IF2_al 55.9 81 0.0018 23.8 7.7 50 33-89 6-59 (76)
205 PF13567 DUF4131: Domain of un 55.1 76 0.0016 27.6 8.4 62 29-97 75-146 (176)
206 PF00436 SSB: Single-strand bi 54.5 27 0.00058 28.4 5.0 36 75-112 63-104 (104)
207 PRK06642 single-stranded DNA-b 53.6 1.1E+02 0.0025 27.3 9.2 35 80-114 72-116 (152)
208 COG1200 RecG RecG-like helicas 53.5 1.4E+02 0.0029 33.4 11.2 78 27-113 58-139 (677)
209 PRK08486 single-stranded DNA-b 51.9 26 0.00057 32.5 4.9 37 80-116 67-109 (182)
210 PRK00448 polC DNA polymerase I 50.3 1.2E+02 0.0027 37.1 11.2 81 28-112 235-320 (1437)
211 cd05698 S1_Rrp5_repeat_hs6_sc5 50.0 1E+02 0.0023 22.9 7.7 48 33-89 3-54 (70)
212 PRK06863 single-stranded DNA-b 50.0 33 0.00071 31.4 5.1 36 80-115 70-111 (168)
213 PLN02853 Probable phenylalanyl 49.1 9.1 0.0002 40.9 1.5 44 408-463 425-471 (492)
214 COG2176 PolC DNA polymerase II 48.9 2.6E+02 0.0056 33.5 12.8 80 30-113 240-324 (1444)
215 PRK06751 single-stranded DNA-b 48.3 35 0.00076 31.4 5.0 39 75-115 62-106 (173)
216 PRK06253 O-phosphoseryl-tRNA s 47.8 19 0.00041 38.7 3.7 49 245-293 210-260 (529)
217 PF04057 Rep-A_N: Replication 47.3 1.1E+02 0.0024 25.3 7.6 61 48-113 40-100 (101)
218 PRK06958 single-stranded DNA-b 46.9 36 0.00078 31.6 4.9 38 76-115 68-111 (182)
219 PF15513 DUF4651: Domain of un 46.8 24 0.00052 26.7 3.0 23 149-171 2-24 (62)
220 cd05707 S1_Rrp5_repeat_sc11 S1 46.7 1E+02 0.0022 22.9 6.8 48 33-89 3-54 (68)
221 PRK07275 single-stranded DNA-b 46.5 36 0.00078 30.9 4.8 52 61-115 49-106 (162)
222 KOG2298 Glycyl-tRNA synthetase 45.5 6 0.00013 41.7 -0.5 24 248-273 214-241 (599)
223 TIGR00594 polc DNA-directed DN 45.0 41 0.00088 39.7 6.1 36 28-65 980-1021(1022)
224 TIGR00472 pheT_bact phenylalan 44.6 50 0.0011 37.8 6.7 23 156-178 498-520 (798)
225 TIGR00621 ssb single stranded 43.8 64 0.0014 29.3 6.1 38 76-115 67-110 (164)
226 TIGR01405 polC_Gram_pos DNA po 43.4 2E+02 0.0043 34.8 11.4 81 28-113 6-92 (1213)
227 PRK06293 single-stranded DNA-b 42.7 49 0.0011 30.1 5.0 36 80-115 61-102 (161)
228 PRK06341 single-stranded DNA-b 42.6 2.4E+02 0.0052 25.8 9.5 35 80-114 72-116 (166)
229 cd05705 S1_Rrp5_repeat_hs14 S1 42.2 60 0.0013 25.1 4.9 48 33-89 6-60 (74)
230 cd05708 S1_Rrp5_repeat_sc12 S1 41.9 1.5E+02 0.0032 22.3 7.5 49 33-89 5-57 (77)
231 PTZ00326 phenylalanyl-tRNA syn 41.0 11 0.00024 40.3 0.7 51 401-463 429-486 (494)
232 PRK08763 single-stranded DNA-b 40.6 52 0.0011 30.0 4.9 36 80-115 70-111 (164)
233 PRK00629 pheT phenylalanyl-tRN 40.3 72 0.0016 36.5 7.1 32 147-178 485-516 (791)
234 PRK00488 pheS phenylalanyl-tRN 40.2 8.4 0.00018 39.3 -0.4 44 410-463 281-327 (339)
235 COG0072 PheT Phenylalanyl-tRNA 39.7 63 0.0014 36.1 6.3 31 148-178 350-380 (650)
236 TIGR00469 pheS_mito phenylalan 39.3 16 0.00035 38.7 1.5 54 399-463 279-337 (460)
237 PRK07274 single-stranded DNA-b 39.0 76 0.0017 27.6 5.5 35 80-114 65-104 (131)
238 COG3390 Uncharacterized protei 38.2 1.5E+02 0.0033 27.5 7.4 63 30-96 46-112 (196)
239 CHL00192 syfB phenylalanyl-tRN 37.7 1.1E+02 0.0024 34.5 8.0 30 149-178 398-427 (704)
240 PF09104 BRCA-2_OB3: BRCA2, ol 37.1 3E+02 0.0066 24.5 9.8 86 28-116 17-103 (143)
241 KOG1894 Uncharacterized conser 37.1 37 0.00081 34.3 3.6 81 149-258 104-201 (412)
242 PRK05813 single-stranded DNA-b 36.7 1.1E+02 0.0023 29.4 6.5 84 29-116 109-211 (219)
243 PRK08059 general stress protei 36.6 1.5E+02 0.0033 25.3 7.0 64 33-107 10-77 (123)
244 TIGR00470 sepS O-phosphoseryl- 35.9 27 0.00059 37.2 2.5 41 410-463 296-339 (533)
245 PRK06386 replication factor A; 34.4 2.9E+02 0.0062 28.6 9.6 70 29-110 12-89 (358)
246 PRK08182 single-stranded DNA-b 33.9 83 0.0018 28.1 5.0 36 80-115 72-113 (148)
247 TIGR00638 Mop molybdenum-pteri 33.6 2E+02 0.0042 21.3 6.7 51 33-89 8-58 (69)
248 PRK07252 hypothetical protein; 33.4 3.1E+02 0.0067 23.5 9.9 48 33-89 6-57 (120)
249 cd04461 S1_Rrp5_repeat_hs8_sc7 33.3 1.9E+02 0.004 22.5 6.6 51 28-89 14-68 (83)
250 cd05692 S1_RPS1_repeat_hs4 S1_ 31.6 2E+02 0.0043 20.7 7.1 48 33-89 3-54 (69)
251 COG1098 VacB Predicted RNA bin 31.6 99 0.0021 26.9 4.8 50 33-89 8-59 (129)
252 COG0423 GRS1 Glycyl-tRNA synth 31.3 37 0.0008 36.5 2.7 33 245-278 189-223 (558)
253 PRK13732 single-stranded DNA-b 31.2 85 0.0018 28.9 4.7 37 80-116 72-116 (175)
254 PF03459 TOBE: TOBE domain; I 30.5 2.2E+02 0.0047 20.8 7.6 51 33-89 6-56 (64)
255 PRK05807 hypothetical protein; 29.5 3.8E+02 0.0082 23.4 8.5 65 33-109 8-75 (136)
256 cd04472 S1_PNPase S1_PNPase: P 29.0 1.5E+02 0.0032 21.6 5.1 48 33-89 3-54 (68)
257 COG2024 Phenylalanyl-tRNA synt 28.9 28 0.00061 35.8 1.3 65 229-293 178-259 (536)
258 PRK06763 F0F1 ATP synthase sub 28.2 1.6E+02 0.0034 27.8 5.8 53 30-95 38-90 (213)
259 PF03843 Slp: Outer membrane l 27.9 2.3E+02 0.0049 25.6 6.9 77 12-97 20-108 (160)
260 PRK09010 single-stranded DNA-b 27.6 1.1E+02 0.0024 28.2 4.9 36 80-115 72-116 (177)
261 KOG1637 Threonyl-tRNA syntheta 26.4 52 0.0011 34.9 2.7 35 145-179 189-223 (560)
262 cd05703 S1_Rrp5_repeat_hs12_sc 26.4 2.9E+02 0.0064 21.0 7.0 48 33-89 3-56 (73)
263 cd04477 RPA1N RPA1N: A subfami 26.1 73 0.0016 26.3 3.1 57 50-112 40-96 (97)
264 cd05689 S1_RPS1_repeat_ec4 S1_ 26.0 1.6E+02 0.0034 22.0 4.8 48 33-89 6-58 (72)
265 cd05691 S1_RPS1_repeat_ec6 S1_ 26.0 2.7E+02 0.0059 20.5 7.3 48 33-89 3-54 (73)
266 TIGR00389 glyS_dimeric glycyl- 25.5 62 0.0013 35.4 3.2 30 245-277 185-218 (551)
267 PF00575 S1: S1 RNA binding do 25.2 1.6E+02 0.0035 22.1 4.8 48 33-89 7-58 (74)
268 cd05687 S1_RPS1_repeat_ec1_hs1 24.7 2.2E+02 0.0048 21.1 5.4 48 33-89 3-54 (70)
269 PF14485 DUF4431: Domain of un 24.1 1.5E+02 0.0034 21.1 4.0 33 61-98 2-34 (48)
270 PRK08582 hypothetical protein; 24.0 2.1E+02 0.0046 25.1 5.8 48 33-89 8-59 (139)
271 PRK03987 translation initiatio 23.7 2.9E+02 0.0063 27.2 7.3 51 33-89 11-64 (262)
272 cd04493 BRCA2DBD_OB1 BRCA2DBD_ 23.7 2.5E+02 0.0054 23.5 5.7 44 44-91 19-62 (100)
273 PRK05813 single-stranded DNA-b 22.8 4.6E+02 0.01 25.0 8.2 81 28-115 7-103 (219)
274 PLN02734 glycyl-tRNA synthetas 22.5 78 0.0017 35.5 3.3 31 245-278 277-311 (684)
275 smart00350 MCM minichromosome 22.2 7.7E+02 0.017 26.6 10.9 35 80-114 118-162 (509)
276 COG1311 HYS2 Archaeal DNA poly 21.7 1E+02 0.0023 32.8 3.9 64 29-96 138-202 (481)
277 cd05706 S1_Rrp5_repeat_sc10 S1 21.6 3.5E+02 0.0076 20.1 7.9 49 33-89 6-57 (73)
278 cd05697 S1_Rrp5_repeat_hs5 S1_ 21.1 2.6E+02 0.0056 20.7 5.2 48 33-89 3-54 (69)
279 PTZ00248 eukaryotic translatio 20.9 3.3E+02 0.0072 27.6 7.1 51 33-89 20-73 (319)
280 cd04497 hPOT1_OB1_like hPOT1_O 20.8 5.6E+02 0.012 22.2 8.6 94 12-116 4-107 (138)
281 PRK05733 single-stranded DNA-b 20.5 1.8E+02 0.004 26.6 4.8 35 80-114 71-113 (172)
282 cd05686 S1_pNO40 S1_pNO40: pNO 20.2 3.9E+02 0.0084 20.1 6.1 50 33-89 6-58 (73)
283 PRK07772 single-stranded DNA-b 20.0 1.5E+02 0.0033 27.5 4.3 32 61-95 55-86 (186)
No 1
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=4.1e-105 Score=842.75 Aligned_cols=460 Identities=86% Similarity=1.335 Sum_probs=416.4
Q ss_pred CcccccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCc
Q 012426 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (464)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~ 84 (464)
.+++..+++|+++......+....|++|+|+|||+++|.+|+++|++|+||++..+||||++++...++.++.+.|+.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~gs 162 (565)
T PLN02603 83 VGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTGA 162 (565)
T ss_pred ccccCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCCC
Confidence 45666778999998432233457799999999999999999999999999998668999998776566665422399999
Q ss_pred EEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhh
Q 012426 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (464)
Q Consensus 85 ~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~ 164 (464)
+|.|+|+|+++++++|.+||++++++||++|++++|++.+.++.+++|.++|||+|++.+++++|+||++++++|+||.+
T Consensus 163 ~V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~~ 242 (565)
T PLN02603 163 SVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 242 (565)
T ss_pred EEEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888999999999999998789999888999999999999999999999999999999999999999
Q ss_pred CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccC
Q 012426 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALS 244 (464)
Q Consensus 165 ~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~ 244 (464)
+||+||+||+|++++|||++++|.||+..+...|+.++...++|++..+..+++.+||++++||+||||||+|++++|++
T Consensus 243 ~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l~ 322 (565)
T PLN02603 243 NGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATALS 322 (565)
T ss_pred CCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHHHhccc
Confidence 99999999999999999999999998866544444333334455555555666778999999999999999999999999
Q ss_pred ceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhh
Q 012426 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324 (464)
Q Consensus 245 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 324 (464)
|||+||||||||+++|+|||+||||||+||+|+|++|+|+++|++|+++++.++++|.++|++.+++.+.++.+.++..+
T Consensus 323 rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~~ 402 (565)
T PLN02603 323 DVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVV 402 (565)
T ss_pred ceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888889998888
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEe
Q 012426 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDML 404 (464)
Q Consensus 325 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~ 404 (464)
+.||++|||+||+++|++.+.+++.+++||.+|+.++|++|++.+++++||||+|||+.++||||++++|+++++||||+
T Consensus 403 ~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~~fDLl 482 (565)
T PLN02603 403 EKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDML 482 (565)
T ss_pred CCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeEEEEEE
Confidence 88999999999999999987767667899999999999999987765479999999999999999988889999999999
Q ss_pred eCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 405 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 405 ~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+||+|||++|+||+|++++|.++|+++|+++++|+|||++++||+ | |+|+++|.+|||||
T Consensus 483 ~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdv 553 (565)
T PLN02603 483 VPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDA 553 (565)
T ss_pred ecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhhe
Confidence 999999999999999999999999999999999999999999998 3 99999999999996
No 2
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-103 Score=792.27 Aligned_cols=405 Identities=44% Similarity=0.739 Sum_probs=372.0
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (464)
.+++++++... ..++.|+|+|||+++|..|+++||.||||+|+ ||||++++. ..++ +++ |+.||+|
T Consensus 3 ~~~~i~di~~~------~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~-~~~--L~~es~v 71 (435)
T COG0017 3 KRTYIKDIKPH------VGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPKNKVYEELFK-AKK--LTLESSV 71 (435)
T ss_pred ceeeHHhhhcc------CCCcEEEEEEEeeeecccCCeEEEEEEcCCcE--EEEEEECCCCcHHHhh-hhc--CCCccEE
Confidence 46788888874 34499999999999999999999999999997 999998642 2345 778 9999999
Q ss_pred EEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccc-hhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhC
Q 012426 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (464)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~-~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~ 165 (464)
.|+|+|++++.+.|++||++++|+|++.+.+++|++++.++ +++++++|||++|++...++|++||.+++++|+||.++
T Consensus 72 ~V~G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~ 151 (435)
T COG0017 72 VVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYEN 151 (435)
T ss_pred EEEEEEEcCCCCCCCEEEEEEEEEEeeccCCCCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999767999999986 99999999999999999999999999999999999999
Q ss_pred CcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCc
Q 012426 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (464)
Q Consensus 166 gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~r 245 (464)
||+||+||+|+++++||++++|.+ +||+.++||+||||||+|+++++++|
T Consensus 152 gF~eV~tP~i~~~~~EGg~elF~v------------------------------~yf~~~a~LtqS~QLyke~~~~al~r 201 (435)
T COG0017 152 GFTEVHTPIITASATEGGGELFKV------------------------------DYFDKEAYLTQSPQLYKEALAAALER 201 (435)
T ss_pred CcEEecCceEeccCCCCCceeEEE------------------------------eecCcceEEecCHHHHHHHHHHHhCc
Confidence 999999999999999999999987 58999999999999999998888999
Q ss_pred eEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhC
Q 012426 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 325 (464)
Q Consensus 246 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 325 (464)
||+|||+||||+++|+|||+||||+|.||+|++++|+|+++|+||+++++.++++|.++|++++.. . ..+.....
T Consensus 202 Vf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~~--~---~~l~~~~~ 276 (435)
T COG0017 202 VFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGRD--N---SELKRPES 276 (435)
T ss_pred eEEecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc--c---hhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999887641 1 12221114
Q ss_pred CCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCC-CCceeeEEEe
Q 012426 326 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDML 404 (464)
Q Consensus 326 ~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d-~~~~~~fdl~ 404 (464)
.||+||||+||+++|++.|.+. +.||+||++++|++|++.++. .|+||||||++++||||++++| |+++.+|||+
T Consensus 277 ~pf~ritY~eAieiL~~~~~e~---~~~GdDl~~e~Er~l~e~~~~-~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll 352 (435)
T COG0017 277 APFPRITYKEAIEILEEKGFEK---VEWGDDLGTEHERYLGEEYFK-PPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLL 352 (435)
T ss_pred CCccEEEHHHHHHHHHhcCCcc---cCCCCccCCHHHHHHHHHhCC-CcEEEEeCcccccccccccCCCCCCeEEEEeee
Confidence 6899999999999999887653 689999999999999988765 5799999999999999988765 4999999999
Q ss_pred eCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 405 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 405 ~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+||+|||+||+||+||++.|.+||+++|+|++.|+||||++|||+ | |+|+++|..|||||
T Consensus 353 ~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea 423 (435)
T COG0017 353 APGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREA 423 (435)
T ss_pred cCCceeeecceeccccHHHHHHHHHHcCCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceec
Confidence 998899999999999999999999999999999999999999998 2 99999999999997
No 3
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=8.1e-99 Score=796.20 Aligned_cols=455 Identities=43% Similarity=0.805 Sum_probs=397.5
Q ss_pred CcccccceecccccCCCCCCCCCCCCEEEEEEEEeeeecC----------------------------------------
Q 012426 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQ---------------------------------------- 44 (464)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~---------------------------------------- 44 (464)
..+|++++.++.|+...+++...+|+.|.|.|||++.+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (633)
T PLN02532 23 PSKYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSSAGDQSPGHKDVRCTEILQSRVPIFR 102 (633)
T ss_pred chhccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCCCCCCCCCcCCcchhHHHhhhcHHHH
Confidence 4679999999999998888888999999999999876542
Q ss_pred ------------------------------CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEe
Q 012426 45 ------------------------------SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (464)
Q Consensus 45 ------------------------------g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~ 94 (464)
|+++||+||||||.+++|||++++...+. +. |+.|++|.|+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~~--~~--L~~Es~V~V~G~V~~ 178 (633)
T PLN02532 103 SIAKVLSGGGSTYPVREKTEIAIQKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLT--QL--MATGTCILAEGVLKL 178 (633)
T ss_pred HHHHHHcCCCCCCCcccccccccccccccCCCcEEEEEECCCCccceEEEEeCCcccHh--hc--CCCceEEEEEEEEEe
Confidence 28899999999998889999987643332 45 999999999999998
Q ss_pred CCC--CCceEEEEEeeEEEEecCC-CCCCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEe
Q 012426 95 SQG--SKQKVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWIS 171 (464)
Q Consensus 95 ~~~--~~~~~el~~~~i~vls~~~-~~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~ 171 (464)
++. ..+++||.+++|+||+++. .+||++.+.+++|++|++||||+|++.++++||+||++.+++|+||.++||+||+
T Consensus 179 ~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 179 PLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred cCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 843 3677999999999999986 4599998888999999999999999999999999999999999999999999999
Q ss_pred CceEeecCCCCCCCCceeeecCCCccc--------c-cC-C-------------CCCCC---------------------
Q 012426 172 SPIITASDCEGAGEQFCVTTLIPSSRE--------A-AE-S-------------PVDAI--------------------- 207 (464)
Q Consensus 172 TP~L~~~~~eg~~~~F~vt~~~~~~~~--------~-~~-~-------------~~~~~--------------------- 207 (464)
||+|++++|||++++|+|+++...+.+ . ++ + .++.+
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTN 338 (633)
T ss_pred CCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 999999999999999999875321100 0 00 0 01010
Q ss_pred ---------------CCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCCCCccccccchhccc
Q 012426 208 ---------------PKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 272 (464)
Q Consensus 208 ---------------~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~ 272 (464)
++.+.+..+++.+||++++||+||||||||++++||+|||+|||+||||+++|+|||+||||||+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~ 418 (633)
T PLN02532 339 QLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEV 418 (633)
T ss_pred cccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceee
Confidence 11123345567799999999999999999998899999999999999999999999999999999
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhc-CCCcccCC
Q 012426 273 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA-KKKFEFLV 351 (464)
Q Consensus 273 e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~-~~~~~~~~ 351 (464)
||+|+||+|+|+++|+||+++++.++++|.++|+++++.......+.++..+..||+||||.||+++|++. +.+++.++
T Consensus 419 Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~~ 498 (633)
T PLN02532 419 EMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKP 498 (633)
T ss_pred eehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCccccc
Confidence 99999999999999999999999999999999988875444445566666677899999999999999876 34455567
Q ss_pred CccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc
Q 012426 352 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431 (464)
Q Consensus 352 ~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~ 431 (464)
+||.||+.++|++|++.+++ .|+||+|||..++||||++++|+++++|||||+||+|||+||++|+|+++.|.++++++
T Consensus 499 ~~g~dL~~e~Er~L~~~~~~-~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~ 577 (633)
T PLN02532 499 EWGIALTTEHLSYLADEIYK-KPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARIEEL 577 (633)
T ss_pred ccCCccChHHHHHHHHHHcC-CCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHc
Confidence 89999999999999987666 89999999999999999998888999999999999899999999999999999999999
Q ss_pred CCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 432 KLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 432 g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|++++.|+|||++++||+ | |+|++||.+|||||
T Consensus 578 Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDv 621 (633)
T PLN02532 578 GLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDA 621 (633)
T ss_pred CCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheE
Confidence 999999999999999998 3 99999999999996
No 4
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=2.9e-98 Score=788.76 Aligned_cols=451 Identities=47% Similarity=0.851 Sum_probs=385.9
Q ss_pred ceecccccCCCCC---------CCCCCCCEEEEEEEEeeeecCC--CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCC
Q 012426 11 KLKIVDVKGGPNE---------GLDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGL 79 (464)
Q Consensus 11 ~~~i~~l~~~~~~---------~~~~~~~~V~v~GwV~~iR~~g--~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~ 79 (464)
++.|..++..+.. ....+|+.|+|+|||+++|++| +++|++||||+|...+|||+++....++.+++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~-- 131 (586)
T PTZ00425 54 RIRICNVLNVPKSEKEFNDNSRKNKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLK-- 131 (586)
T ss_pred ceeeehhccCccccccccccccccccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhc--
Confidence 5666666653221 2345799999999999999997 49999999999867899999866455667778
Q ss_pred CCCCcEEEEEEEEEeCCCC--------CceEEEEE-----eeEEEEecCC-C-CCCCCccccchhhhhhcceecCCCccc
Q 012426 80 ITTGASIWIQGNVVPSQGS--------KQKVELKV-----NKIVLVGKSD-P-SYPIQKKRVSREFLRTKAHLRPRTNTF 144 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~~~--------~~~~el~~-----~~i~vls~~~-~-~~P~~~~~~~~~~~r~~r~l~~R~~~~ 144 (464)
|+.|++|.|+|+|+.++.+ .+.+||.+ ++++||+++. + +||++++.++.+++|++||||+|++.+
T Consensus 132 l~~gs~v~v~G~v~~~~~~~~n~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~ 211 (586)
T PTZ00425 132 CGVGCCFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFI 211 (586)
T ss_pred CCCccEEEEEEEEEcCCccccCcCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHH
Confidence 9999999999999976533 35699998 7999999983 2 499998889999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCC--------------------cccc-----
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS--------------------SREA----- 199 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~--------------------~~~~----- 199 (464)
+++||+||++..++|+||.++||+||+||+|++++|||++++|.|++...+ +++.
T Consensus 212 ~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 291 (586)
T PTZ00425 212 SSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNA 291 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeeeccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999754210 0000
Q ss_pred ---cCCC----CCCCCCCC-CCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCCCCccccccchhcc
Q 012426 200 ---AESP----VDAIPKTK-DGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 271 (464)
Q Consensus 200 ---~~~~----~~~~~~~~-~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE 271 (464)
+.++ ....++.. .+..+.+.+||++++||+||||||||++++|++|||+||||||||+++|+|||+||||||
T Consensus 292 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLylE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE 371 (586)
T PTZ00425 292 NNNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIE 371 (586)
T ss_pred cccccccccccccccccccccccccccccccCcceEEEcCchHHHHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEE
Confidence 0000 00001111 122334568999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCC
Q 012426 272 PELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 351 (464)
Q Consensus 272 ~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~ 351 (464)
+||+|+|++++|+++|++|+++++.+++.|.++|.+++.....++.+.|+..++.||++|||+||+++|++.+..++.++
T Consensus 372 ~E~af~d~~d~m~~~E~li~~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~~ 451 (586)
T PTZ00425 372 PEIAFADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVPV 451 (586)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCCC
Confidence 99999999999999999999999999999988888776444455677777777889999999999999998765444567
Q ss_pred CccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc
Q 012426 352 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431 (464)
Q Consensus 352 ~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~ 431 (464)
+||.+|+.++|++|++.++. .||||||||++++||||+.++|+.++++|||++||+|||++|++|+|+++.|.++++++
T Consensus 452 ~~G~dL~~e~Er~L~~~~~~-~PvFItdyP~~~kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~ 530 (586)
T PTZ00425 452 KWGMDLQSEHERFVAEQIFK-KPVIVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEK 530 (586)
T ss_pred CcccccchHHHHHHHHHhcC-CcEEEECCccccCccccCcCCCCCeEEEEeEEccCceEEccCCCccccHHHHHHHHHHc
Confidence 89999999999999986555 79999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 432 KLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 432 g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|++++.|+|||++++||+ | |+|++||.+|||||
T Consensus 531 gl~~e~~~wYLd~rryG~pPhgGfGLGiERLvm~ltGl~nIRDv 574 (586)
T PTZ00425 531 KLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDT 574 (586)
T ss_pred CCChhHHHHHHHHhhCCCCCCceEEEcHHHHHHHHcCCCchheE
Confidence 999999999999999998 3 99999999999996
No 5
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=2e-98 Score=791.66 Aligned_cols=455 Identities=53% Similarity=0.901 Sum_probs=390.2
Q ss_pred CcccccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCC--eEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCC
Q 012426 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (464)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~--~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (464)
.+.|+.+.+|++++....++...+|+.|+|+|||+++|.+|+ ++||+|||+++.+.||||++++.. ...+. |+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~--~~~~~--L~~ 101 (572)
T PLN02221 26 KAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY--DLSTL--VAT 101 (572)
T ss_pred cccccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh--hHHhc--CCC
Confidence 456778889999986544556788999999999999999985 899999999954569999986532 22245 999
Q ss_pred CcEEEEEEEEEeCCC---CCceEEEEEeeEEEEecCCC-CCCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHH
Q 012426 83 GASIWIQGNVVPSQG---SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (464)
Q Consensus 83 g~~V~V~G~v~~~~~---~~~~~el~~~~i~vls~~~~-~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~ 158 (464)
||+|.|+|+|+.++. ..|++||++++|+|+|+|.+ ++|++.+.++.+++|+++|||+|++.++++||+||++.+++
T Consensus 102 ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~ai 181 (572)
T PLN02221 102 GTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFAT 181 (572)
T ss_pred ceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999998763 34689999999999999964 69999888899999999999999999999999999999999
Q ss_pred HHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcc----------------------------------cccCC--
Q 012426 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR----------------------------------EAAES-- 202 (464)
Q Consensus 159 r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~----------------------------------~~~~~-- 202 (464)
|+||.++||+||+||+|++++|||++++|+|+++..... |.+.+
T Consensus 182 R~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (572)
T PLN02221 182 HSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASK 261 (572)
T ss_pred HHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccch
Confidence 999999999999999999999999999999976431000 00000
Q ss_pred ---------------CC---CC----C--CCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCC
Q 012426 203 ---------------PV---DA----I--PKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENS 258 (464)
Q Consensus 203 ---------------~~---~~----~--~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~ 258 (464)
.. +. . .....+..+++.+||++++||+||||||||++++|++|||+||||||||++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s 341 (572)
T PLN02221 262 EEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENS 341 (572)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCC
Confidence 00 00 0 001234455677899999999999999999999999999999999999999
Q ss_pred CCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHH
Q 012426 259 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIE 338 (464)
Q Consensus 259 ~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~ 338 (464)
+|+||||||||||+||+|.|++|+|+++|+||+++++.+.++|.+++.++.........+.|+..+..||+||||.||++
T Consensus 342 ~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~ 421 (572)
T PLN02221 342 HTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIE 421 (572)
T ss_pred CCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHH
Confidence 99999999999999999999999999999999999999999998888776543333345566656678999999999999
Q ss_pred HHHhc---CCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCc
Q 012426 339 LLIKA---KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGS 415 (464)
Q Consensus 339 ~l~~~---~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~ 415 (464)
+|++. |.+++.++.||.+|+.++|++|++.++. +|+||+|||..++||||+.++|+.+++|||||++|+|||++|+
T Consensus 422 ~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~-~pvfv~dyP~~~~pfy~~~~~d~~~~~~fDLl~~g~~El~~g~ 500 (572)
T PLN02221 422 LLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQ-KPLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGS 500 (572)
T ss_pred HHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcC-CcEEEEcCChhhCcccccCCCCCceEEEEEEecCCceEECCHH
Confidence 99884 5445445689999999999999886555 8999999999999999988778889999999999999999999
Q ss_pred cccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 416 QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 416 ~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+|+|+++.+.++++++|+++..|+|||++++||+ | |+|+++|.+|||||
T Consensus 501 ~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdv 560 (572)
T PLN02221 501 QREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDV 560 (572)
T ss_pred HHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheE
Confidence 9999999999999999999999999999999998 3 99999999999986
No 6
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-97 Score=727.10 Aligned_cols=405 Identities=57% Similarity=0.942 Sum_probs=383.4
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEE
Q 012426 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (464)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~ 105 (464)
...|+++.|.|||+++|..|+++|++|+||++.+++|||+++. +.+. +..|++|.|+|.+..++.+++++|+.
T Consensus 17 ~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~~-----~~q~--la~Gt~i~~~g~l~~~~~~~q~iel~ 89 (446)
T KOG0554|consen 17 PRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDSE-----QSQL--LATGTCISAEGVLKVSKGAKQQIELN 89 (446)
T ss_pred CCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEechH-----Hhhh--ccccceEEEEeeEEeccchheeeeee
Confidence 5679999999999999999999999999999999999999973 2345 99999999999999998888999999
Q ss_pred EeeEEEEecCCCCCCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCC
Q 012426 106 VNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185 (464)
Q Consensus 106 ~~~i~vls~~~~~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~ 185 (464)
+++|.+.+.++++||++++.++++++|+.+|||.|++...+++|+||++..++|.||++++|++|+||+||+++|||+++
T Consensus 90 ~eki~~vG~v~~~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE 169 (446)
T KOG0554|consen 90 AEKIKVVGTVDESYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGAGE 169 (446)
T ss_pred eeEEEEEeecCCCCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCCcc
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCCCCccccc
Q 012426 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265 (464)
Q Consensus 186 ~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~~t~rHl~ 265 (464)
+|+||+..+ ++++||++|+||++|.|||++.++++++|||++||+||||+++|+|||+
T Consensus 170 ~F~vtt~~d----------------------~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLA 227 (446)
T KOG0554|consen 170 VFQVTTLTD----------------------YSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLA 227 (446)
T ss_pred eEEEEecCc----------------------ccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHh
Confidence 999987532 5679999999999999999999999999999999999999999999999
Q ss_pred cchhccceeccCC-HHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcC
Q 012426 266 EFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK 344 (464)
Q Consensus 266 EFtmlE~e~a~~~-~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~ 344 (464)
||||||.|+||++ ++|+|+++|.+++++++.++++|.+++++..++........++..+..+|.+|||+||+++|++..
T Consensus 228 EFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~ 307 (446)
T KOG0554|consen 228 EFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAV 307 (446)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhc
Confidence 9999999999998 999999999999999999999999999999888888888899888888899999999999999987
Q ss_pred -CCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHH
Q 012426 345 -KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEY 423 (464)
Q Consensus 345 -~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~ 423 (464)
..|+.+++||.+|+++||++|++.+++ .||||+|||+.++||||+.++++.++.+|||++||||||+|||+||.+
T Consensus 308 t~~fk~~~kwG~~l~~ehe~yL~~~~~~-~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe~--- 383 (446)
T KOG0554|consen 308 TKKFKTPPKWGIDLSTEHEKYLVEECFK-KPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREER--- 383 (446)
T ss_pred ccccccCcccccccchhhHHHHHHHhcC-CCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchhh---
Confidence 678889999999999999999998876 899999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 424 LEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 424 l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
.+|+++.|+.++.|+||||+||||. | ++.+++|.+||||.
T Consensus 384 -~~~l~e~g~~~~~~eWYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~ 434 (446)
T KOG0554|consen 384 -KARLKERGLTREELEWYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDV 434 (446)
T ss_pred -HHHHHhcCCCccccceehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhc
Confidence 6778999999999999999999987 2 89999999999983
No 7
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=7.8e-97 Score=770.57 Aligned_cols=425 Identities=54% Similarity=0.903 Sum_probs=380.4
Q ss_pred ecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc--cchhhhhcCCCCCCcEEEEEE
Q 012426 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQG 90 (464)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~V~G 90 (464)
+|+++... .....|++|+|+|||+++|.+|+++|++|||+++.+.||||++++. ..++.++. |+.||+|.|+|
T Consensus 3 ~~~~~~~~---~~~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~--l~~gs~V~v~G 77 (453)
T TIGR00457 3 AIKDLLQQ---VYKFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKS--LTTGSSVSVTG 77 (453)
T ss_pred cHHHHHhc---chhcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHc--CCCCcEEEEEE
Confidence 45555542 1246799999999999999999999999999993336999998763 22445677 99999999999
Q ss_pred EEEeCCCCCceEEEEEeeEEEEecCC-CCCCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEE
Q 012426 91 NVVPSQGSKQKVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169 (464)
Q Consensus 91 ~v~~~~~~~~~~el~~~~i~vls~~~-~~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~E 169 (464)
++++++...+++||.+++++||++|. .++|++.+.++.++++++||||+|++..+++|++||.|++++|+||.++||+|
T Consensus 78 ~v~~~~~~~~~~El~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~e 157 (453)
T TIGR00457 78 KVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTW 157 (453)
T ss_pred EEEcCCCCCCCEEEEEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 99998766678999999999999997 35999988889999999999999999999999999999999999999999999
Q ss_pred EeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEE
Q 012426 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249 (464)
Q Consensus 170 V~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI 249 (464)
|+||+|++++|||++++|.+.+.+. ..+.+||++++||+||||||||++++|++|||+|
T Consensus 158 V~TP~l~~~~~eg~~~~F~v~~~~~---------------------~~~~~~~~~~~yL~~Spql~lq~l~~g~~rVf~i 216 (453)
T TIGR00457 158 VSPPILTSNDCEGAGELFRVSTDGI---------------------DFSQDFFGKEAYLTVSGQLYLETYALALSKVYTF 216 (453)
T ss_pred ecCCeEeecCCCCCCCceEeccccc---------------------ccchhccCCccccccCHHHHHHHHhhcccCceEe
Confidence 9999999999999999998743221 0123699999999999999999888999999999
Q ss_pred ccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCC
Q 012426 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFV 329 (464)
Q Consensus 250 ~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~ 329 (464)
|||||||+++|+||||||||||||++|+|++|+|+++|+|++++++.+.+++..++++++...+......+++.++.||+
T Consensus 217 ~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (453)
T TIGR00457 217 GPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFA 296 (453)
T ss_pred eeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCc
Confidence 99999999998999999999999999999999999999999999999998888888777665555667778888899999
Q ss_pred CCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCcc
Q 012426 330 QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIG 409 (464)
Q Consensus 330 ~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~Gig 409 (464)
+|||+||+++|++.+..++.++.||.+|+.++|++|++.++. +|+||||||..++|||++.++++++++|||||++|+|
T Consensus 297 rit~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~~~~~-~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~~g~g 375 (453)
T TIGR00457 297 RITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEYFK-PPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPGIG 375 (453)
T ss_pred eeEHHHHHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHHHhCC-CCEEEECCCcccChhhcccCCCcCceeeeeeccCCce
Confidence 999999999999987665556789999999999999988766 7999999999999999877788899999999999999
Q ss_pred ccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 410 ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 410 Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
||+|||+|+|+++++.++|+++|+|++.|+|||++++||+ | |+|+++|.+|||||
T Consensus 376 Ei~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv 441 (453)
T TIGR00457 376 EIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDA 441 (453)
T ss_pred EEeehhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhh
Confidence 9999999999999999999999999999999999999998 3 99999999999997
No 8
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.8e-95 Score=759.66 Aligned_cols=423 Identities=59% Similarity=1.002 Sum_probs=381.4
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc--cchhhhhcCCCCCCcEEEE
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWI 88 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~V 88 (464)
+.+|+++... ...|++|+|+|||+++|.+|+++|++|||++|. +|+++..+. ..++.++. |+.||+|.|
T Consensus 3 ~~~~~~~~~~-----~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~--l~~~s~v~v 73 (450)
T PRK03932 3 RVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKK--LTTGSSVIV 73 (450)
T ss_pred cEEHHHhccc-----ccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCc--EEEEEEcCCChHHHHHHhc--CCCCcEEEE
Confidence 4567887633 477999999999999999999999999999985 888886543 34566777 999999999
Q ss_pred EEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcE
Q 012426 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI 168 (464)
Q Consensus 89 ~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~ 168 (464)
+|++.+++++.+++||++++++||+++..++|++.++++.++++++||||+|++.++++|++||.|++++|+||.++||+
T Consensus 74 ~G~v~~~~~~~~~~el~~~~i~vl~~~~~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~ 153 (450)
T PRK03932 74 TGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFV 153 (450)
T ss_pred EEEEEcCCCCCCCEEEEEEEEEEccCCCCCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 99999998877889999999999999876799999888999999999999999999999999999999999999999999
Q ss_pred EEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCceEE
Q 012426 169 WISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYT 248 (464)
Q Consensus 169 EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfe 248 (464)
||+||+|++++|||++++|.+.+... ..+.+||+.++||+||||||||++++|++|||+
T Consensus 154 EV~TP~L~~~~~eg~~~~F~v~~~~~---------------------~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~ 212 (450)
T PRK03932 154 WVDTPIITASDCEGAGELFRVTTLDL---------------------DFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYT 212 (450)
T ss_pred EecCCceeccCCCCCCCceEeecccc---------------------cccccccCCCcccccCHHHHHHHHHhccCCeEE
Confidence 99999999999999999998743210 012369999999999999999998899999999
Q ss_pred EccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCC
Q 012426 249 FGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328 (464)
Q Consensus 249 I~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~ 328 (464)
|+||||||+++|+||||||||||||++|+|++++|+++|+||+++++.+++++.+++++++++.+.+..+.++..++.||
T Consensus 213 i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~ 292 (450)
T PRK03932 213 FGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPF 292 (450)
T ss_pred eeeccccCCCCCccccccccccceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCc
Confidence 99999999999999999999999999999999999999999999999999988888988888776666666665567899
Q ss_pred CCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCc
Q 012426 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 408 (464)
Q Consensus 329 ~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~Gi 408 (464)
++|||+||+++|++.+.+++.++.||.+++.++|++|.++++. .|+||||||.+++||||+.++++++++||||++||+
T Consensus 293 ~rity~eA~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~-~pvfI~~yP~~~~pfy~~~~~~~~~~~~fdLl~~g~ 371 (450)
T PRK03932 293 PRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHFK-KPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGI 371 (450)
T ss_pred eEeEHHHHHHHHHHcCCCcCCCCCcccccChHHHHHHHHHhcC-CcEEEECCCcccCcccCcCCCCCCEEEEEEEEcCCC
Confidence 9999999999999988776656689999999999999985555 799999999999999977665559999999999999
Q ss_pred cccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 409 GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 409 gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|||++|++|+++++++.++++++|++++.++||+++++||| | |+|+++|.+|||||
T Consensus 372 ~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv 438 (450)
T PRK03932 372 GEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDV 438 (450)
T ss_pred ceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhh
Confidence 99999999999999999999999999999999999999988 3 99999999999986
No 9
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=1.2e-91 Score=728.15 Aligned_cols=396 Identities=28% Similarity=0.452 Sum_probs=352.2
Q ss_pred ecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcEEEEE
Q 012426 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~V~ 89 (464)
+++++.. +..|+.|+|+|||+++|.+|+++|++|||++| .||||++++. ..++.++. |+.||+|.|+
T Consensus 2 ~~~~l~~------~~~g~~v~i~G~v~~~R~~g~~~Fi~lrd~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~~s~v~v~ 71 (428)
T TIGR00458 2 YSADIKP------EMDGQEVTFMGWVHEIRDLGGLIFVLLRDREG--LIQITAPAKKVSKNLFKWAKK--LNLESVVAVR 71 (428)
T ss_pred chhhCch------hhCCCEEEEEEEEEEEecCCCcEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhC--CCCCcEEEEE
Confidence 4555654 36789999999999999999999999999997 4999998653 23555677 9999999999
Q ss_pred EEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcccc---chhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCC
Q 012426 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (464)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~---~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~g 166 (464)
|+|++++...+++||.+++++|+|+|..++|++.+.. +.+.+.++||||+|++.++++|++||+|++++|+||.++|
T Consensus 72 G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~g 151 (428)
T TIGR00458 72 GIVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEG 151 (428)
T ss_pred EEEEecCCCCCcEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887666789999999999999987789876543 5677789999999999999999999999999999999999
Q ss_pred cEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH-HHhhccCc
Q 012426 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSN 245 (464)
Q Consensus 167 F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~r 245 (464)
|+||+||+|++++|||++++|.+ +||+.++||+|||||||| ++++|++|
T Consensus 152 f~EV~TP~L~~~~~eg~~~~f~v------------------------------~~~~~~~yL~~Spql~~q~li~~g~~r 201 (428)
T TIGR00458 152 FIEVHTPKLVASATEGGTELFPI------------------------------TYFEREAFLGQSPQLYKQQLMAAGFER 201 (428)
T ss_pred CEEEeCCceecCCCCCCcceeee------------------------------EecCCcEEECcCHHHHHHHHHhcccCc
Confidence 99999999999999999999976 478999999999999998 56899999
Q ss_pred eEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhC
Q 012426 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 325 (464)
Q Consensus 246 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 325 (464)
||+||||||||+++|+||||||||||||++|+|++|+|+++|+||+++++.+.+++..++...+.. + ....
T Consensus 202 Vf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~--------~-~~~~ 272 (428)
T TIGR00458 202 VYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFK--------L-EKPE 272 (428)
T ss_pred EEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccc--------c-ccCC
Confidence 999999999999998999999999999999999999999999999999999998887666543321 0 0124
Q ss_pred CCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccc-cCCCCCceeeEEEe
Q 012426 326 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMR-QNDDGRTVAAMDML 404 (464)
Q Consensus 326 ~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~-~~~d~~~~~~fdl~ 404 (464)
.||++|||.||++++++.|.+ ..||.+++.++|++|.+.+ . .|+||+|||.+++|||++ .++++++++|||||
T Consensus 273 ~pf~rity~eA~~~l~~~g~~----~~~~~~l~~~~E~~l~~~~-~-~p~fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~ 346 (428)
T TIGR00458 273 GKFVRLTYDEAIEMANAKGVE----IGWGEDLSTEAEKALGEEM-D-GLYFITDWPTEIRPFYTMPDEDNPEISKSFDLM 346 (428)
T ss_pred CCceEEEHHHHHHHHHHcCCC----CCCccccchHHHHHHHHHh-C-CCEEEEeCchhcCcccccccCCCCCEEEEEEEE
Confidence 589999999999999988764 4688899999999998765 4 799999999999999965 45677999999999
Q ss_pred eCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 405 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 405 ~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++|+ ||+|||+|+||+++|++|++++|++++.++|||+|++||+ | |+|+++|.+|||||
T Consensus 347 ~~g~-Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv 416 (428)
T TIGR00458 347 YRDL-EISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREA 416 (428)
T ss_pred eCCe-EEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheE
Confidence 9995 9999999999999999999999999999999999999988 3 99999999999986
No 10
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.1e-91 Score=726.94 Aligned_cols=401 Identities=30% Similarity=0.512 Sum_probs=356.6
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc--cchhhhhcCCCCCCcEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIW 87 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~ 87 (464)
++++|+++... ..|++|+|+|||+++|.+|+++|++|||++|. ||+|++++. ..++.++. |++||+|.
T Consensus 3 ~~~~~~~l~~~------~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g~--iQ~v~~~~~~~~~~~~~~~--L~~gs~V~ 72 (437)
T PRK05159 3 KRHLTSELTPE------LDGEEVTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIKK--LKRESVVS 72 (437)
T ss_pred ceeEhhhCChh------hCCCEEEEEEEeEeeecCCCeEEEEEEcCCcE--EEEEEeCCccHHHHHHHhC--CCCCcEEE
Confidence 68999999874 67999999999999999999999999999974 999998763 23455677 99999999
Q ss_pred EEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcc---ccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhh
Q 012426 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK---RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (464)
Q Consensus 88 V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~---~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~ 164 (464)
|+|+|.+++...+++||++++++|+|+|..++|+..+ ..+.++++++||||+|++.++++|++||.|++++|+||.+
T Consensus 73 v~G~v~~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~ 152 (437)
T PRK05159 73 VTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYE 152 (437)
T ss_pred EEEEEEcCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987677899999999999999867887643 2357888899999999999999999999999999999999
Q ss_pred CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHH-hhcc
Q 012426 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY-ATAL 243 (464)
Q Consensus 165 ~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll-~~g~ 243 (464)
+||+||+||+|+++++||+++.|.+ +||++++||+||||||||++ ++|+
T Consensus 153 ~gf~EV~TP~L~~~~~eg~~~~f~~------------------------------~~~~~~~~L~~Spql~~q~l~~~g~ 202 (437)
T PRK05159 153 NGFTEIFTPKIVASGTEGGAELFPI------------------------------DYFEKEAYLAQSPQLYKQMMVGAGF 202 (437)
T ss_pred CCCEEEeCCcccccCCCCCcceEeE------------------------------EecCCceEecCCHHHHHHHHHhcCC
Confidence 9999999999999999999999975 58899999999999999864 5779
Q ss_pred CceEEEccccccCCCCCccccccchhccceeccCC-HHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhh
Q 012426 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLST 322 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 322 (464)
+|||+||||||||+++|+||||||||||||++|+| ++++|+++|+||+.+++.+.+++.+++.+.+.. + .
T Consensus 203 ~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~--------~-~ 273 (437)
T PRK05159 203 ERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIE--------L-P 273 (437)
T ss_pred CcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccC--------C-C
Confidence 99999999999999998899999999999999998 999999999999999999998887776655431 1 0
Q ss_pred hhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcc---cCCCeeeeeCCCCCcccccccC-CCCCce
Q 012426 323 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQN-DDGRTV 398 (464)
Q Consensus 323 ~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~---~~~p~fI~~yP~~~~pfy~~~~-~d~~~~ 398 (464)
..+.||++|||.||++++++.|.+ ..||++++.++|++|++.+. ..+|+||+|||.+++|||++.+ ++++++
T Consensus 274 ~~~~~f~rit~~eA~~~l~~~~~~----~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~ 349 (437)
T PRK05159 274 VPETPIPRITYDEAIEILKSKGNE----ISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEIS 349 (437)
T ss_pred cCCCCceEeEHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEE
Confidence 234689999999999999988754 46888899999998865331 2149999999999999998654 567899
Q ss_pred eeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 399 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 399 ~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+|||||++|+ ||+|||+|++|+++|++|++++|++++.++|||+|++||+ | |+|+++|.+|||||
T Consensus 350 ~~fdl~~~g~-Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv 425 (437)
T PRK05159 350 KSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREA 425 (437)
T ss_pred EEEEEEECCE-EEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEE
Confidence 9999999996 9999999999999999999999999999999999999988 3 99999999999986
No 11
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.6e-89 Score=721.54 Aligned_cols=408 Identities=23% Similarity=0.376 Sum_probs=347.7
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc----chhhhhcCCCCCCcEE
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQVKSGLITTGASI 86 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~----~~~~~~~~~l~~g~~V 86 (464)
++.|++|... ...|++|+|+|||+++|.+|+++|++|||++| +||+|++.+.. -++.++. |+.||+|
T Consensus 65 ~~~i~~l~~~-----~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~--~iQ~v~~~~~~~~~~~~~~~~~--l~~esiV 135 (550)
T PTZ00401 65 FIPVAVLSKP-----ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSD--SVQAMAAVEGDVPKEMIDFIGQ--IPTESIV 135 (550)
T ss_pred eEEHHHCCcc-----ccCCCEEEEEEEEEEEecCCCeEEEEEEeCCc--CEEEEEECCCccCHHHHHHHhc--CCCCCEE
Confidence 4778888753 23799999999999999999999999999997 59999975421 1333566 9999999
Q ss_pred EEEEEEEeCC-----CCCceEEEEEeeEEEEecCCCCCCCCcccc-----------chhhhhhcceecCCCccchhhhhH
Q 012426 87 WIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQKKRV-----------SREFLRTKAHLRPRTNTFGAVARV 150 (464)
Q Consensus 87 ~V~G~v~~~~-----~~~~~~el~~~~i~vls~~~~~~P~~~~~~-----------~~~~~r~~r~l~~R~~~~~~~~~~ 150 (464)
.|+|+|++.+ ...+++||++++++|||+|..++|++.++. +.+++.++||||+|++.++++|++
T Consensus 136 ~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~ 215 (550)
T PTZ00401 136 DVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRL 215 (550)
T ss_pred EEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHH
Confidence 9999999742 345679999999999999987789876432 456777999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 012426 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (464)
Q Consensus 151 rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~ 230 (464)
||+|++++|+||.++||+||+||+|+++++||++++|.+ +||++++||+|
T Consensus 216 rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v------------------------------~yf~~~~~L~q 265 (550)
T PTZ00401 216 QSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKL------------------------------EYFNRFAYLAQ 265 (550)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCCCcccccccc------------------------------ccCCCCeecCC
Confidence 999999999999999999999999999999999999976 58999999999
Q ss_pred chhHHHHHHh-hccCceEEEccccccCCCCCccccccchhccceeccC-CHHHHHHHHHHHHHHHHHHHhhcCccccccc
Q 012426 231 SGQLNAETYA-TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFF 308 (464)
Q Consensus 231 Spql~lqll~-~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~ 308 (464)
|||||||+++ +|++|||+||||||||+++|+|||||||||||||+|. +|+++|+++|+|+++++..+.+. ..++...
T Consensus 266 Spql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~-~~ei~~~ 344 (550)
T PTZ00401 266 SPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATH-TKELKAV 344 (550)
T ss_pred CHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHcc-chhhhhh
Confidence 9999999765 6899999999999999999999999999999999986 69999999999999999988765 3333332
Q ss_pred ccccc----------------------------cchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHH
Q 012426 309 NTWIE----------------------------KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360 (464)
Q Consensus 309 ~~~~~----------------------------~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~ 360 (464)
....+ ..+.+.+.. .+.+|+||+|.||+++|++.+. .+..|++|++.+
T Consensus 345 ~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~rl~y~eai~lL~~~~~---~~~~~~~dl~~~ 420 (550)
T PTZ00401 345 CQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHN-MDSRMLRINYMHCIELLNTVLE---EKMAPTDDINTT 420 (550)
T ss_pred ccccccccccccccHHHHHhcCCCcccccccchHHHHHHHHh-cCCCcccccHHHHHHHHHHhcc---cCCCcccccCch
Confidence 21100 011222222 4667999999999999999752 234678899999
Q ss_pred HHHHhh---hhcccCCCeeeee-CCCCCccccc-ccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCc
Q 012426 361 HERYLT---EEAFGGCPVIVSD-YPKEIKAFYM-RQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 435 (464)
Q Consensus 361 ~e~~l~---e~~~~~~p~fI~~-yP~~~~pfy~-~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~ 435 (464)
+|++|+ ++.++ .|+||+| ||.+++|||+ +.++|+++++|||||++| +||+|||+|+|||++|++||+++|+|+
T Consensus 421 ~E~~L~~~v~~~~~-~~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDlf~~G-~EI~sG~qR~~d~~~l~~r~~~~G~d~ 498 (550)
T PTZ00401 421 NEKLLGKLVKERYG-TDFFISDRFPSSARPFYTMECKDDERFTNSYDMFIRG-EEISSGAQRIHDPDLLLARAKMLNVDL 498 (550)
T ss_pred HHHHHHHHHHHhcC-CCEEEECCCChhhCchhcCcCCCCCCEEEEEEEEeCC-EEEccchhhcCCHHHHHHHHHHcCCCc
Confidence 999885 44454 7999998 9999999995 445678999999999999 599999999999999999999999999
Q ss_pred cchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 436 DSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 436 ~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
..++|||++++||+ | |+|+++|.+|||||
T Consensus 499 ~~~~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~~nIR~v 538 (550)
T PTZ00401 499 TPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLA 538 (550)
T ss_pred hhhHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHhee
Confidence 99999999999988 3 99999999999986
No 12
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=5e-89 Score=720.41 Aligned_cols=405 Identities=25% Similarity=0.419 Sum_probs=348.4
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc----c-hhhhhcCCCCCCc
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----G-YDQVKSGLITTGA 84 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~----~-~~~~~~~~l~~g~ 84 (464)
+++.|++|.. ...|++|+|+|||+++|.+|+++|++|||+++ +||+|+..+.. . ++.+.. |+.||
T Consensus 68 ~~~~i~~l~~------~~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es 137 (530)
T PLN02850 68 EWTDVSDLGE------ELAGSEVLIRGRVHTIRGKGKSAFLVLRQSGF--TVQCVVFVSEVTVSKGMVKYAKQ--LSRES 137 (530)
T ss_pred eEeEhhhcch------hhCCCEEEEEEEEEEEccCCCeEEEEEEeCCc--CEEEEEECCccccCHHHHHHHhC--CCCCC
Confidence 3467777765 37899999999999999999999999999986 59999986532 1 233566 99999
Q ss_pred EEEEEEEEEeCC----CCCceEEEEEeeEEEEecCCCCCCCCccc--------------------cchhhhhhcceecCC
Q 012426 85 SIWIQGNVVPSQ----GSKQKVELKVNKIVLVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPR 140 (464)
Q Consensus 85 ~V~V~G~v~~~~----~~~~~~el~~~~i~vls~~~~~~P~~~~~--------------------~~~~~~r~~r~l~~R 140 (464)
+|.|+|+|++.+ +..+++||++++|+|+|+|.+++|++.++ .+.++++++||||+|
T Consensus 138 ~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR 217 (530)
T PLN02850 138 VVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLR 217 (530)
T ss_pred EEEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhc
Confidence 999999998532 22357999999999999998779987653 235667799999999
Q ss_pred CccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 141 TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 141 ~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
++.++++||+||.|++++|+||.++||+||+||+|+++++||++++|.+ +
T Consensus 218 ~~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v------------------------------~ 267 (530)
T PLN02850 218 TPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL------------------------------D 267 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee------------------------------c
Confidence 9999999999999999999999999999999999999999999999976 5
Q ss_pred ccCcccccccchhHHHHH-HhhccCceEEEccccccCCCCCccccccchhccceeccC-CHHHHHHHHHHHHHHHHHHHh
Q 012426 221 FFEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYIL 298 (464)
Q Consensus 221 ~f~~~~yL~~Spql~lql-l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~~~dlm~~~e~li~~i~~~~~ 298 (464)
||++++||+||||||||+ +++|++|||+||||||||+++|+|||+|||||||||+|. +|+++|+++|+|+++++..+.
T Consensus 268 yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~ 347 (530)
T PLN02850 268 YKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLN 347 (530)
T ss_pred cCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999986 568999999999999999999999999999999999998 599999999999999999999
Q ss_pred hcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhh---hcccCCCe
Q 012426 299 DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPV 375 (464)
Q Consensus 299 ~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~~~~p~ 375 (464)
+.+..++..+....+.. .+ +.++ +++++||+||+++|++.|.++ .++.|++.++|+.|++ ..+...++
T Consensus 348 ~~~~~el~~i~~~~~~~---~~-~~~~-~~~rit~~ea~~~L~~~g~~~----~~~~dl~~~~E~~Lg~~v~~~~~~~~~ 418 (530)
T PLN02850 348 ERCKKELEAIREQYPFE---PL-KYLP-KTLRLTFAEGIQMLKEAGVEV----DPLGDLNTESERKLGQLVKEKYGTDFY 418 (530)
T ss_pred hhhhhhHHhhcccCCcc---hh-hhcC-CcccCCHHHHHHHHHHcCCCC----CCCCCcchHHHHHHHHHHHHhcCCCeE
Confidence 88877776554322211 11 1222 678999999999999988643 3567899999998864 22332567
Q ss_pred eeeeCCCCCccccccc-CCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh-----
Q 012426 376 IVSDYPKEIKAFYMRQ-NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS----- 449 (464)
Q Consensus 376 fI~~yP~~~~pfy~~~-~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~----- 449 (464)
||+|||..++|||++. ++|+++++|||||++| +||+|||+|+||+++|++||+++|++++.++|||++++||+
T Consensus 419 ii~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~G-~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG 497 (530)
T PLN02850 419 ILHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRG-EEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGG 497 (530)
T ss_pred EEECCccccCchhccccCCCCCeEEEEEEEeCC-EEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCCce
Confidence 8899999999999654 4678999999999999 59999999999999999999999999999999999999998
Q ss_pred ---h---HhhhhcCCCCCCCC
Q 012426 450 ---G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 ---g---L~mll~~~~~I~~~ 464 (464)
| |||+++|.+|||||
T Consensus 498 ~GiGlERLvM~l~g~~nIr~v 518 (530)
T PLN02850 498 FGVGLERVVMLFCGLNNIRKT 518 (530)
T ss_pred EEEcHHHHHHHHcCCCchheE
Confidence 3 99999999999986
No 13
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=8.2e-88 Score=708.48 Aligned_cols=420 Identities=19% Similarity=0.300 Sum_probs=350.2
Q ss_pred cccccceecccccCCCCCC--C--CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhhhhcC
Q 012426 6 GEFRKKLKIVDVKGGPNEG--L--DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSG 78 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~--~--~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~~~~~ 78 (464)
++|.++++++++.+.|++. + ...++.|+|+|||+++|.+||++|++|+|++| .||+|++++.. .++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g--~iQ~~~~~~~~~~~~~~~~~~- 102 (496)
T TIGR00499 26 NKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESG--QIQLYVNKDDLPEDFYEFDEY- 102 (496)
T ss_pred CCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCc--cEEEEEECCcCcHHHHHHHHh-
Confidence 5788999999998877541 1 24488999999999999999999999999997 49999987642 1333332
Q ss_pred CCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccc---hhhhhhcceecCCC-ccchhhhhHHHHH
Q 012426 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPRT-NTFGAVARVRNAL 154 (464)
Q Consensus 79 ~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~---~~~~r~~r~l~~R~-~~~~~~~~~rs~i 154 (464)
.|+.||+|.|+|++.++++++ +||++++|++||+|. .|+|.+.++ .+.+.++||||+|+ +.++++|++||+|
T Consensus 103 ~l~~gd~V~v~G~~~~t~~ge--lel~~~~i~ilsk~~--~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i 178 (496)
T TIGR00499 103 LLDLGDIIGVTGYPFKTKTGE--LSVHVTELQILTKAL--RPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVRSKI 178 (496)
T ss_pred cCCCCCEEEEEEEEEECCCCc--EEEEeeEEEEEecCC--CCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 289999999999999998754 999999999999997 555555543 46667899999995 6999999999999
Q ss_pred HHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhH
Q 012426 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (464)
Q Consensus 155 ~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql 234 (464)
++++|+||.++||+||+||+|+++++++++++|.+ ++ ++|+.++||++||||
T Consensus 179 ~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t-~~---------------------------~~~~~~~yLriSpEL 230 (496)
T TIGR00499 179 IKAIRRFLDDRGFIEVETPMLQVIPGGANARPFIT-HH---------------------------NALDMDLYLRIAPEL 230 (496)
T ss_pred HHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEe-ec---------------------------ccCCCceEEecCHHH
Confidence 99999999999999999999999888777899953 33 357899999999999
Q ss_pred HHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc-----ccccc
Q 012426 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-----DMDFF 308 (464)
Q Consensus 235 ~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~-----~i~~~ 308 (464)
||| ++++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||+.+++.+.+++.. ++++.
T Consensus 231 ylKrlivgG~~rVfeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~~~~~~~~ 309 (496)
T TIGR00499 231 YLKRLIVGGFEKVYEIGRNFRNEGVD-TTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYGELEIDFK 309 (496)
T ss_pred HHHHHHhCCCCceEEEecceecCCCC-CcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceecCceeccCC
Confidence 995 6789999999999999999997 6999999999999999999999999999999999999876543 23444
Q ss_pred ccccccchHHHHh---hhhCCCCCCC-CHHHHHHHHHhcCCCc-ccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCC
Q 012426 309 NTWIEKGIIDRLS---TVAERDFVQL-SYTDAIELLIKAKKKF-EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 383 (464)
Q Consensus 309 ~~~~~~~~~~~l~---~~~~~~~~~i-t~~ea~~~l~~~~~~~-~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~ 383 (464)
.+|.+.++.++++ +..|.++... +.+++.+++++.|+++ ..+..||..+...+++++. +.+. +|+||+|||.+
T Consensus 310 ~pf~rit~~eai~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve-~~l~-~P~fv~dyP~~ 387 (496)
T TIGR00499 310 KPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLE-HTLI-QPTFITHYPAE 387 (496)
T ss_pred CCceEEEHHHHHHHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHH-hccC-CCEEEECCchh
Confidence 5666666666666 5555555332 4455555566666655 3345678888889998865 4455 79999999999
Q ss_pred CcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHH------HcCCCccch--HHHHHHhhhhh------
Q 012426 384 IKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY--WWYLDLRHYGS------ 449 (464)
Q Consensus 384 ~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~------~~g~~~~~~--~~yl~~~~~G~------ 449 (464)
++|||+.+++++++++|||||++|+ ||||||+|+|||++|++||+ +.|.+++.+ +|||+|++|||
T Consensus 388 ~splak~~~~~p~~~~rFeL~i~G~-Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~PP~gG~ 466 (496)
T TIGR00499 388 ISPLAKRNPSNPEFTDRFELFIAGK-EIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGL 466 (496)
T ss_pred cCcccccCCCCCCeEEEEEEEeCCe-EEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCCCCCceE
Confidence 9999988778889999999999997 99999999999999999975 467777665 89999999998
Q ss_pred --h---HhhhhcCCCCCCCC
Q 012426 450 --G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 --g---L~mll~~~~~I~~~ 464 (464)
| |+|++||.+||||+
T Consensus 467 GiGiDRLvMlltg~~~Irdv 486 (496)
T TIGR00499 467 GIGIDRLVMLLTDSKSIRDV 486 (496)
T ss_pred EEhHHHHHHHHhCCCcHhee
Confidence 3 99999999999986
No 14
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=1.6e-87 Score=709.42 Aligned_cols=419 Identities=18% Similarity=0.240 Sum_probs=363.0
Q ss_pred cccccceecccccCCCCC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc-----chhhh-h
Q 012426 6 GEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQV-K 76 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~-----~~~~~-~ 76 (464)
++|.++++++++.+.|.+ ++...|++|+|+|||+++|.+||++|++|+|++| .||||++++.. .|+.+ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~Gk~~F~~LrD~~g--~iQv~~~~~~~~~~~~~~~~~~~ 159 (553)
T PLN02502 82 YKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGG--KIQLYADKKRLDLDEEEFEKLHS 159 (553)
T ss_pred CCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCCCeEEEEEecCCc--cEEEEEECccccchhHHHHHHHh
Confidence 678999999999887753 3456789999999999999999999999999997 49999986532 25555 3
Q ss_pred cCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccc---hhhhhhcceecCC-CccchhhhhHHH
Q 012426 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRN 152 (464)
Q Consensus 77 ~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~rs 152 (464)
. |++||+|.|+|++.++++++ +||.+++|+|||+|. +|+|.+.++ .+.+.++||||+| ++.++++|++||
T Consensus 160 ~--l~~gdiV~V~G~~~~t~~ge--lel~~~~i~vLs~~l--~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs 233 (553)
T PLN02502 160 L--VDRGDIVGVTGTPGKTKKGE--LSIFPTSFEVLTKCL--LMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTRA 233 (553)
T ss_pred C--CCCCcEEEEEEEEEecCCCC--EEEEEeEEEEEeccC--CCCCcccccccchhhhccchhhhhhcCHHHHHHHHHHH
Confidence 5 99999999999999998764 999999999999998 566655443 5666689999995 789999999999
Q ss_pred HHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccch
Q 012426 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSG 232 (464)
Q Consensus 153 ~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Sp 232 (464)
+|++++|+||.++||+||+||+|+++++++++.+|. |++ ++|+.++||++||
T Consensus 234 ~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~-t~~---------------------------n~~~~~~yL~~Sp 285 (553)
T PLN02502 234 KIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFV-THH---------------------------NDLNMDLYLRIAT 285 (553)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeeccCCCcccccee-eec---------------------------ccCCcceeeecCH
Confidence 999999999999999999999999988777788994 443 4789999999999
Q ss_pred hHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc-----cccc
Q 012426 233 QLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMD 306 (464)
Q Consensus 233 ql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~-----~~i~ 306 (464)
||||| ++++|++|||+||||||||+++ .||||||||||||++|+||+|+|+++|+||+.+++.+.+.+. .+++
T Consensus 286 el~lK~L~v~g~~rVfeIg~~FRnE~~~-~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~~i~ 364 (553)
T PLN02502 286 ELHLKRLVVGGFERVYEIGRQFRNEGIS-TRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHGIEID 364 (553)
T ss_pred HHHHHHHHHhccCCEEEEcCeeeCCCCC-CccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccccccCCcccc
Confidence 99996 6889999999999999999997 599999999999999999999999999999999999987653 3577
Q ss_pred ccccccccchHHHHhhhhCCCCCC-CCHHHHHHHHH----hcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCC
Q 012426 307 FFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLI----KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 381 (464)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~~-it~~ea~~~l~----~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP 381 (464)
+..+|.+.++.++++++.|.+|+. ++++++.+.|+ +.++++..+..||..+..++++++.+. +. +|+||+|||
T Consensus 365 ~~~p~~rit~~e~l~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~-l~-~PtFV~dyP 442 (553)
T PLN02502 365 FTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEET-LV-QPTFVLDHP 442 (553)
T ss_pred CCCCceeccHHHHHHHHhCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhh-cC-CCEEEECCc
Confidence 778899999999999999999887 89999876444 446665556789999999999996654 45 799999999
Q ss_pred CCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc----CC--Cc-c-chHHHHHHhhhhh----
Q 012426 382 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL----KL--NR-D-SYWWYLDLRHYGS---- 449 (464)
Q Consensus 382 ~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~----g~--~~-~-~~~~yl~~~~~G~---- 449 (464)
..++|||+.+++|+++++|||||++|+ ||||||+|++||.+|++||.++ +. +. . ..++||+|++|||
T Consensus 443 ~~~splak~~~~~p~~~erFELfi~G~-Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~g 521 (553)
T PLN02502 443 VEMSPLAKPHRSKPGLTERFELFINGR-ELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTG 521 (553)
T ss_pred cccCcccccCCCCCCeEEEEEEEeCCe-EEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCc
Confidence 999999998888999999999999997 9999999999999999888642 22 21 1 2377999999998
Q ss_pred ----h---HhhhhcCCCCCCCC
Q 012426 450 ----G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 ----g---L~mll~~~~~I~~~ 464 (464)
| |||++||..||||+
T Consensus 522 G~GiGiDRLvMlltg~~sIrdV 543 (553)
T PLN02502 522 GWGLGIDRLVMLLTDSASIRDV 543 (553)
T ss_pred eEEehHHHHHHHHcCCcchhee
Confidence 3 99999999999985
No 15
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-86 Score=699.92 Aligned_cols=419 Identities=17% Similarity=0.266 Sum_probs=347.1
Q ss_pred cccccceecccccCCCCC--CC--CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchh-hhhc
Q 012426 6 GEFRKKLKIVDVKGGPNE--GL--DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-QVKS 77 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~--~~--~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~-~~~~ 77 (464)
++|.++++++++.+.|++ .+ ...+++|+|+|||+++|.+||++|++|+|++| +||||++++. ..|+ .++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g--~iQ~~~~~~~~~~~~~~~~~~~ 115 (505)
T PRK12445 38 NDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQFKK 115 (505)
T ss_pred CCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCc--cEEEEEECCccchhhHHHHHhc
Confidence 678999999999887753 11 23478899999999999999999999999997 5999998653 2344 3567
Q ss_pred CCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcccc---chhhhhhcceecCC-CccchhhhhHHHH
Q 012426 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPR-TNTFGAVARVRNA 153 (464)
Q Consensus 78 ~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~---~~~~~r~~r~l~~R-~~~~~~~~~~rs~ 153 (464)
|+.||+|+|+|++.++++++ +||.++++++||+|. .|+|.+.+ +.+.+.++||||+| ++..+++|++||+
T Consensus 116 --l~~Gd~V~v~G~~~~t~~ge--lel~~~~~~llsk~~--~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~ 189 (505)
T PRK12445 116 --WDLGDIIGARGTLFKTQTGE--LSIHCTELRLLTKAL--RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSK 189 (505)
T ss_pred --CCCCCEEEEEEEEEecCCCc--EEEEEeEEEEEecCC--CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 99999999999999998754 999999999999997 55555443 44666799999999 5789999999999
Q ss_pred HHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchh
Q 012426 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (464)
Q Consensus 154 i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spq 233 (464)
|++++|+||.++||+||+||+|++..+++++.+| +|++ ++|+.++||++|||
T Consensus 190 i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF-~t~~---------------------------~~~~~~~yL~~SpE 241 (505)
T PRK12445 190 ILAAIRQFMVARGFMEVETPMMQVIPGGASARPF-ITHH---------------------------NALDLDMYLRIAPE 241 (505)
T ss_pred HHHHHHHHHHHCCCEEeeCCeeEecCCCCcccce-eccc---------------------------ccCCcceeeecCHH
Confidence 9999999999999999999999988776667799 4543 46899999999999
Q ss_pred HHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc-----cccc
Q 012426 234 LNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-----DMDF 307 (464)
Q Consensus 234 l~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~-----~i~~ 307 (464)
|||| ++++|++||||||||||||++ |.||||||||||||++|+||+|+|+++|+||+++++.+++.+.. .+++
T Consensus 242 LylKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~~~~~~~i~~ 320 (505)
T PRK12445 242 LYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDF 320 (505)
T ss_pred HHHHHHHhccCCcEEEEehhccCCCC-CCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhcccceecCceeccC
Confidence 9995 788999999999999999999 79999999999999999999999999999999999998865432 3455
Q ss_pred cccccccchHHHHhhhhC-CCCC-CCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCc
Q 012426 308 FNTWIEKGIIDRLSTVAE-RDFV-QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385 (464)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~-~~~~-~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~ 385 (464)
..+|.+.++.++++.+.+ .++. ..+.+++.+++++.|++++....+|..++. ....++++.+. +|+||+|||.+++
T Consensus 321 ~~pf~rit~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vE~~l~-~P~Fv~dyP~~~s 398 (505)
T PRK12445 321 GKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTE-IFDEVAEAHLI-QPTFITEYPAEVS 398 (505)
T ss_pred CCCceEEEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHH-HHHHHHHhhcC-CCEEEECCCchhC
Confidence 567777777777776665 2332 235666777777767654333334433443 44445676665 8999999999999
Q ss_pred ccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc------CCCccch--HHHHHHhhhhh--------
Q 012426 386 AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDSY--WWYLDLRHYGS-------- 449 (464)
Q Consensus 386 pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~------g~~~~~~--~~yl~~~~~G~-------- 449 (464)
|||+++++|+++++|||||++|+ ||+|||+|++||++|++||+++ |.++... +|||+|++|||
T Consensus 399 plak~~~~~p~~~~rFeL~i~G~-Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~PP~gG~Gi 477 (505)
T PRK12445 399 PLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGI 477 (505)
T ss_pred cccccCCCCCCceEEEEEEeCCE-EEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCCCCCeEEE
Confidence 99998888889999999999996 9999999999999999999843 6665543 89999999998
Q ss_pred h---HhhhhcCCCCCCCC
Q 012426 450 G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 g---L~mll~~~~~I~~~ 464 (464)
| |+|++||.+||||+
T Consensus 478 GiDRLvMlltg~~sIrdv 495 (505)
T PRK12445 478 GIDRMIMLFTNSHTIRDV 495 (505)
T ss_pred hHHHHHHHHcCCCchheE
Confidence 3 99999999999985
No 16
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.1e-87 Score=700.47 Aligned_cols=419 Identities=20% Similarity=0.302 Sum_probs=342.6
Q ss_pred cccccceecccccCCCCCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhhhhcC
Q 012426 6 GEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSG 78 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~~~~~ 78 (464)
++|.++++|+++.+.+.+.. ...++.|+|+|||+++|.+|+++|++|||++| .||||++++.. .|+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g~~~Fi~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~- 103 (491)
T PRK00484 27 NKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMGKASFATLQDGSG--RIQLYVSKDDVGEEALEAFKK- 103 (491)
T ss_pred CCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCCceEEEEEEcCCc--cEEEEEECCcCCHHHHHHHhc-
Confidence 67899999999988765311 12247899999999999999999999999997 49999987642 3556777
Q ss_pred CCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcccc---chhhhhhcceecCC-CccchhhhhHHHHH
Q 012426 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPR-TNTFGAVARVRNAL 154 (464)
Q Consensus 79 ~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~---~~~~~r~~r~l~~R-~~~~~~~~~~rs~i 154 (464)
|+.||+|.|+|+|.+++++ ++||.+++++|||+|..++| .+.+ +.+.+.++||||+| ++.++++|++||+|
T Consensus 104 -l~~g~~v~v~G~v~~t~~g--e~el~~~~~~vls~~~~plP--~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i 178 (491)
T PRK00484 104 -LDLGDIIGVEGTLFKTKTG--ELSVKATELTLLTKSLRPLP--DKFHGLTDVETRYRQRYVDLIVNPESRETFRKRSKI 178 (491)
T ss_pred -CCCCCEEEEEEEEEEcCCC--cEEEEEeEEEEEeccCCCCC--cccccccchhhhccceeeehhcCHHHHHHHHHHHHH
Confidence 9999999999999999875 49999999999999974444 4433 34556699999998 78999999999999
Q ss_pred HHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhH
Q 012426 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (464)
Q Consensus 155 ~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql 234 (464)
++++|+||.++||+||+||+|+++++++++++|. +++ +||+.++||+|||||
T Consensus 179 ~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~-t~~---------------------------~~~~~~~yL~~Spql 230 (491)
T PRK00484 179 ISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFI-THH---------------------------NALDIDLYLRIAPEL 230 (491)
T ss_pred HHHHHHHHHHCCCEEEECCceeccCCCccceeee-ecc---------------------------ccCCCceEeccCHHH
Confidence 9999999999999999999999887777789995 332 578999999999999
Q ss_pred HHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc-----cccccc
Q 012426 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFF 308 (464)
Q Consensus 235 ~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~-----~~i~~~ 308 (464)
||| ++++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+++. ..+++.
T Consensus 231 ~lk~l~v~g~~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~~i~~~~~~~~~~ 309 (491)
T PRK00484 231 YLKRLIVGGFERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTYQGTEIDFG 309 (491)
T ss_pred HHHHHHhccCCcEEEEecceecCCCC-CCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCceEecCCEeecCC
Confidence 996 6789999999999999999997 599999999999999999999999999999999999886432 122333
Q ss_pred ccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccc
Q 012426 309 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388 (464)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy 388 (464)
.+|.+.++.++++...|.++...+.+++.+.+++.+.+......||..+...++.+ +++.+. +||||+|||..++|||
T Consensus 310 ~pf~rity~eai~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-ve~~~~-~P~Fi~dyP~~~~pf~ 387 (491)
T PRK00484 310 PPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEF-VEPKLI-QPTFITDYPVEISPLA 387 (491)
T ss_pred CCceEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-hhhhcC-CcEEEECCChHHhhhh
Confidence 44555555555555555554444444444444555554433345666677777776 555555 7999999999999999
Q ss_pred cccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc------CCCcc-ch-HHHHHHhhhhh--------h--
Q 012426 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRD-SY-WWYLDLRHYGS--------G-- 450 (464)
Q Consensus 389 ~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~------g~~~~-~~-~~yl~~~~~G~--------g-- 450 (464)
|.+++|+++++|||||++|+ ||||||+|++||.+|++||+++ |.++. .+ +|||+|++||| |
T Consensus 388 k~~~~~~~~~~rFdL~i~G~-Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG~GiGiD 466 (491)
T PRK00484 388 KRHREDPGLTERFELFIGGR-EIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGLGIGID 466 (491)
T ss_pred ccCCCCCCeEEEEEEEECCE-EEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCeEEEeHH
Confidence 98888899999999999998 9999999999999999999742 43332 23 69999999998 2
Q ss_pred -HhhhhcCCCCCCCC
Q 012426 451 -LVFILIKVTNFLNC 464 (464)
Q Consensus 451 -L~mll~~~~~I~~~ 464 (464)
|+|++||.+||||+
T Consensus 467 RLvm~ltg~~~Irdv 481 (491)
T PRK00484 467 RLVMLLTDSPSIRDV 481 (491)
T ss_pred HHHHHHhCCCcHHhc
Confidence 99999999999985
No 17
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=1.2e-85 Score=697.10 Aligned_cols=421 Identities=14% Similarity=0.218 Sum_probs=360.0
Q ss_pred cccccceecccccCCCCC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCc-----cchhh-h
Q 012426 6 GEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQ-V 75 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~-----~~~~~-~ 75 (464)
++|.++++++++.+.|++ ++...++.|+|+|||+++|.+| +++|++|+|.+| .|||+++++. ..|+. .
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g--~iQv~~~~~~~~~~~~~~~~~~ 183 (585)
T PTZ00417 106 HKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGA--KIQVLANFAFHDHTKSNFAECY 183 (585)
T ss_pred CCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCe--eEEEEEECCccCCCHHHHHHHH
Confidence 568899999999887753 1222456799999999999998 799999999887 5999998652 23544 4
Q ss_pred hcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccchhhhhhcceecCC-CccchhhhhHHHHH
Q 012426 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPR-TNTFGAVARVRNAL 154 (464)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~~~~~r~~r~l~~R-~~~~~~~~~~rs~i 154 (464)
+. |+.||+|+|+|.+.+++++ ++||.++++++|++|..++|..-...+.+.+.++||||+| ++..+++|++||+|
T Consensus 184 ~~--l~~Gd~V~V~G~~~~t~~g--el~i~~~~i~llsk~l~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~I 259 (585)
T PTZ00417 184 DK--IRRGDIVGIVGFPGKSKKG--ELSIFPKETIILSPCLHMLPMKYGLKDTEIRYRQRYLDLMINESTRSTFITRTKI 259 (585)
T ss_pred hc--CCCCCEEEEEeEEcCCCCc--eEEEEEEEEEEEecCCCCCCcccCCCCcccccccchhhhhcCHHHHHHHHHHHHH
Confidence 66 9999999999999998765 4999999999999998667764212344566689999999 77899999999999
Q ss_pred HHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhH
Q 012426 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (464)
Q Consensus 155 ~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql 234 (464)
++++|+||.++||+||+||+|+++.+++++.+|. |+++ +++.++||++||||
T Consensus 260 i~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~-T~~n---------------------------~~d~~lYLriSpEL 311 (585)
T PTZ00417 260 INYLRNFLNDRGFIEVETPTMNLVAGGANARPFI-THHN---------------------------DLDLDLYLRIATEL 311 (585)
T ss_pred HHHHHHHHHHCCeEEEeCCeeeccCCcccceeEE-eccc---------------------------CCCcceEEeecHHH
Confidence 9999999999999999999999997777788894 5543 57899999999999
Q ss_pred HHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc-----------
Q 012426 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK----------- 302 (464)
Q Consensus 235 ~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~----------- 302 (464)
||+ |+++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||++++..+.+...
T Consensus 312 ~lKrLlvgG~~rVfeIgp~FRnE~~~-~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~ 390 (585)
T PTZ00417 312 PLKMLIVGGIDKVYEIGKVFRNEGID-NTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKD 390 (585)
T ss_pred HHHHHHHhCCCCEEEEcccccCCCCC-CCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccc
Confidence 995 6789999999999999999997 799999999999999999999999999999999998875421
Q ss_pred -ccccccccccccchHHHHhhhhCCCCCC-----CCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCee
Q 012426 303 -EDMDFFNTWIEKGIIDRLSTVAERDFVQ-----LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVI 376 (464)
Q Consensus 303 -~~i~~~~~~~~~~~~~~l~~~~~~~~~~-----it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~f 376 (464)
.++++..+|.+.++.+++++.+|.++.. .++++|++++++.|+++..+.+|+..++.++++++.+.+.+ +|+|
T Consensus 391 ~~~i~~~~pf~rit~~ea~~~~~g~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~vE~~l~~-~PtF 469 (585)
T PTZ00417 391 PIEIDFTPPYPKVSIVEELEKLTNTKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPN-KPFF 469 (585)
T ss_pred cccccCCCCceeccHHHHHHHHhCCCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhCC-CcEE
Confidence 2466777899999999999999987642 58999999999998877666788889999999986665543 6999
Q ss_pred eeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH------cCCCccch---HHHHHHhhh
Q 012426 377 VSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY---WWYLDLRHY 447 (464)
Q Consensus 377 I~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~------~g~~~~~~---~~yl~~~~~ 447 (464)
|+|||..++|||+...+||++++|||||++|+ ||+|||+|++||.+|++||++ .| +.+.+ ++||+|++|
T Consensus 470 I~dyP~~~sPLak~~~~dp~v~eRFELfi~G~-EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Dedfl~Aley 547 (585)
T PTZ00417 470 IIEHPQIMSPLAKYHRSKPGLTERLEMFICGK-EVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAAFCTSLEY 547 (585)
T ss_pred EECCChhhCchhhhcCCCCCeEEeEEeEECCE-EEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHHHHHHHHc
Confidence 99999999999998778899999999999997 999999999999999998763 35 44443 349999999
Q ss_pred hh--------h---HhhhhcCCCCCCCC
Q 012426 448 GS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 448 G~--------g---L~mll~~~~~I~~~ 464 (464)
|| | |+|++||.+||||+
T Consensus 548 GmPPtgG~GiGIDRLvMlltg~~sIrdV 575 (585)
T PTZ00417 548 GLPPTGGLGLGIDRITMFLTNKNCIKDV 575 (585)
T ss_pred CCCCCceEEEcHHHHHHHHcCCcchhee
Confidence 98 2 99999999999985
No 18
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-84 Score=690.96 Aligned_cols=424 Identities=14% Similarity=0.197 Sum_probs=354.9
Q ss_pred CCCcccccceecccccCCCCC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc----chhhh
Q 012426 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV 75 (464)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~----~~~~~ 75 (464)
.++++|.++++++++.+.|++ ++...++.|+|+|||+++|.+||++|++|||++| .||||++++.. .++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G--~IQvv~~~~~~~~~~~~~~~ 155 (659)
T PTZ00385 78 AAYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGN--ELQVVGQVGEHFTREDLKKL 155 (659)
T ss_pred CccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCc--eEEEEEECCccCCHHHHHHH
Confidence 467889999999999988764 1122356799999999999999999999999997 49999987642 24444
Q ss_pred -hcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCC-CCCC-C--ccc---cchhhhhhcceecCC-Cccchh
Q 012426 76 -KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPI-Q--KKR---VSREFLRTKAHLRPR-TNTFGA 146 (464)
Q Consensus 76 -~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~-~~P~-~--~~~---~~~~~~r~~r~l~~R-~~~~~~ 146 (464)
+. |+.||+|.|+|+|.+++++ ++||+++++++||++.. +.|+ + .+. .+.+.+.++|||||| ++.+++
T Consensus 156 ~~~--l~~gdiV~V~G~v~~t~~G--eleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ 231 (659)
T PTZ00385 156 KVS--LRVGDIIGADGVPCRMQRG--ELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIE 231 (659)
T ss_pred HhC--CCCCCEEEEEEEEEecCCc--eEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHH
Confidence 46 9999999999999998865 49999999999999642 2221 2 132 366778899999997 678999
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 226 (464)
+|++||+|++++|+||.++||+||+||+|+++++++++++|. +++ ++|+.++
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~-t~~---------------------------n~~~~~~ 283 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFV-THH---------------------------NANAMDL 283 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceE-eec---------------------------ccCCCCE
Confidence 999999999999999999999999999999999999999994 443 3578999
Q ss_pred ccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc--
Q 012426 227 FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-- 303 (464)
Q Consensus 227 yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~-- 303 (464)
||+|||||||| ++++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||++++..+.+...-
T Consensus 284 yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~~~~~ 362 (659)
T PTZ00385 284 FLRVAPELHLKQCIVGGMERIYEIGKVFRNEDAD-RSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTTVVQI 362 (659)
T ss_pred EecCChHHHHHHHhhcccCCEEEEeceecCCCCC-CCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCeeEEe
Confidence 99999999996 7789999999999999999996 8999999999999999999999999999999999988764321
Q ss_pred ----------cccccccccccchHHHHhhhhCCCCCC---C-CHHHH---HHHHHhcCCCcccCCCccccccHHHHHHhh
Q 012426 304 ----------DMDFFNTWIEKGIIDRLSTVAERDFVQ---L-SYTDA---IELLIKAKKKFEFLVKWGCDLQSEHERYLT 366 (464)
Q Consensus 304 ----------~i~~~~~~~~~~~~~~l~~~~~~~~~~---i-t~~ea---~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~ 366 (464)
++++..+|.+.++.+.+.+.+|.+++. + +-+++ ..++++.|++++....+|..++..++.++.
T Consensus 363 ~~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve 442 (659)
T PTZ00385 363 YPENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFIT 442 (659)
T ss_pred eccccCCCcccccCCCCceEEeHHHHHHHHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHH
Confidence 355556888888888888888877643 3 33333 355666677665444557777778888765
Q ss_pred hhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHH-----HcCCCccch---
Q 012426 367 EEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-----ELKLNRDSY--- 438 (464)
Q Consensus 367 e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~-----~~g~~~~~~--- 438 (464)
+. +. +|+||+|||.+++||++.+++||++++|||||++|+ ||+|||+|+|||.+|++||+ +.+.|++.+
T Consensus 443 ~~-l~-qPtFI~dyP~e~sPLak~~~~dp~~teRFELfi~G~-EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~D 519 (659)
T PTZ00385 443 DR-VV-EPTFVMDHPLFMSPLAKEQVSRPGLAERFELFVNGI-EYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLD 519 (659)
T ss_pred Hh-hC-CcEEEeCCccccCcccccCCCCCCeEEEEEEEeCCe-EeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccH
Confidence 54 45 899999999999999998888899999999999997 99999999999999999994 456666666
Q ss_pred HHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 439 WWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 439 ~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+|||+|++||| | |+|++||.+||||+
T Consensus 520 edfL~AleyGmPPtgG~GIGIDRLvMlltg~~sIReV 556 (659)
T PTZ00385 520 ETFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDG 556 (659)
T ss_pred HHHHHHHHcCCCCCCceEEcHHHHHHHHcCCcchhhe
Confidence 89999999999 2 99999999999985
No 19
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-84 Score=657.41 Aligned_cols=419 Identities=20% Similarity=0.288 Sum_probs=367.8
Q ss_pred cccccceecccccCCCCCC--CCCC--CCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhh-hhc
Q 012426 6 GEFRKKLKIVDVKGGPNEG--LDRV--GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ-VKS 77 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~--~~~~--~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~-~~~ 77 (464)
+.|.++++++++.+.|.+. +... ...|+|+|||+++|.+||++|++|+|++| +||++++++. ..|+. .+.
T Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~g--kiQ~yi~k~~~~~~~~~~~~~~ 111 (502)
T COG1190 34 NDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSG--KIQLYVNKDEVGEEVFEALFKK 111 (502)
T ss_pred CcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCc--eEEEEEeccccchhhHHHHHhc
Confidence 5688889999999877541 1122 23499999999999999999999999997 5999999875 34554 455
Q ss_pred CCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccch---hhhhhcceecCCCc-cchhhhhHHHH
Q 012426 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPRTN-TFGAVARVRNA 153 (464)
Q Consensus 78 ~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~~---~~~r~~r~l~~R~~-~~~~~~~~rs~ 153 (464)
++.||+|+|+|.+.+|++++ ++|.|+++++|+||+ .|+|.|++++ +.+-+.||+|+-.+ ..+..|..||+
T Consensus 112 --~dlGDiigv~G~~~~T~~Ge--lSv~v~~~~lLsKsL--~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ 185 (502)
T COG1190 112 --LDLGDIIGVEGPLFKTKTGE--LSVSVEELRLLSKSL--RPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKRSK 185 (502)
T ss_pred --cccCCEEeeeeeeeecCCCc--eEEEEEEEeeecccC--CCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999876 999999999999999 7888888866 44557999999965 89999999999
Q ss_pred HHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchh
Q 012426 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (464)
Q Consensus 154 i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spq 233 (464)
|++++|+||.++||+||+||+|+...+++++.|| +|+||. ++.++||++|||
T Consensus 186 ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF-~ThhNa---------------------------ld~dlyLRIApE 237 (502)
T COG1190 186 IIRAIREFLDDRGFLEVETPMLQPIPGGAAARPF-ITHHNA---------------------------LDMDLYLRIAPE 237 (502)
T ss_pred HHHHHHHHHHHCCCeEeccccccccCCCcccccc-eeeecc---------------------------cCCceEEeeccH
Confidence 9999999999999999999999999999999999 687764 578899999999
Q ss_pred HHH-HHHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcC-----cccccc
Q 012426 234 LNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC-----KEDMDF 307 (464)
Q Consensus 234 l~l-qll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~-----~~~i~~ 307 (464)
||| +++++|++||||||++||||++| .||||||||||+|+||+||+|+|+++|+||+.+++.+.+.. ..++++
T Consensus 238 LyLKRliVGG~erVfEIgr~FRNEGid-~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~ 316 (502)
T COG1190 238 LYLKRLIVGGFERVFEIGRNFRNEGID-TTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDF 316 (502)
T ss_pred HHHHHHHhcCchhheeeccccccCCCc-cccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEec
Confidence 999 79999999999999999999996 89999999999999999999999999999999999998743 357899
Q ss_pred cccccccchHHHHhhhhCCC-CCCCCHHHHHHHHHhcCCCcccC--CCccccccHHHHHHhhhhcccCCCeeeeeCCCCC
Q 012426 308 FNTWIEKGIIDRLSTVAERD-FVQLSYTDAIELLIKAKKKFEFL--VKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384 (464)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~-~~~it~~ea~~~l~~~~~~~~~~--~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~ 384 (464)
.++|.+.++.+++.+.+|.. +...+.++|.+++++.+++.... ..+|..+...+|..+ |..+. +|+||+|||.++
T Consensus 317 ~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~v-E~~li-qPTFv~d~P~ei 394 (502)
T COG1190 317 SKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELV-EAKLI-QPTFVTDHPVEI 394 (502)
T ss_pred CCCeeeeehHHHHHHHhCccccccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHh-hhhhc-CCceeecCcccc
Confidence 99999999999999999985 45668899999999998775443 336677888999884 44445 799999999999
Q ss_pred cccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH------cCCCccc--hHHHHHHhhhhh-------
Q 012426 385 KAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDS--YWWYLDLRHYGS------- 449 (464)
Q Consensus 385 ~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~~~~~G~------- 449 (464)
+||+++++++|++++|||||+.|. ||||||.|++||..|++||.+ .|-+.+. .++|++|++|||
T Consensus 395 SPLak~~~~~p~~teRFElfi~g~-EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPTgG~G 473 (502)
T COG1190 395 SPLAKRHRSNPGLTERFELFIGGK-EIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGGLG 473 (502)
T ss_pred CccccCCCCCcchhhhheeeeccE-EeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCCCCcc
Confidence 999999999999999999999996 999999999999999999975 3544332 388999999999
Q ss_pred -h---HhhhhcCCCCCCCC
Q 012426 450 -G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 -g---L~mll~~~~~I~~~ 464 (464)
| |||+|||++||||.
T Consensus 474 iGIDRLvMllT~~~sIRdV 492 (502)
T COG1190 474 IGIDRLVMLLTNSPSIRDV 492 (502)
T ss_pred ccHHHHHHHHcCCCchhhe
Confidence 2 99999999999983
No 20
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-81 Score=614.55 Aligned_cols=403 Identities=24% Similarity=0.414 Sum_probs=353.6
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhhhhc-CCCCCCcEEE
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKS-GLITTGASIW 87 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~~~~-~~l~~g~~V~ 87 (464)
+.+.||.. +..++.|+|+|||+..|..||++|+.||++.. +|||++..+.. ...+++. ++|+.+|+|.
T Consensus 71 ~~v~dl~~------~~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~--tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~ 142 (533)
T KOG0556|consen 71 TDVSDLDE------SNDGSEVLVRGRVHTSRLKGKLCFLVLRQQGS--TVQCLVAVNEDGTISKQMVKFAGSISKESIVD 142 (533)
T ss_pred eehhhhhh------hcCCceEEEEEEEeeccccceEEEEEEeccCc--eEEEEEEcCCCchHHHHHHHHHhhcCcceEEE
Confidence 45555555 47789999999999999999999999999975 69999976543 1122221 2499999999
Q ss_pred EEEEEEeCCC-----CCceEEEEEeeEEEEecCCCCCCCCcccc--------------------chhhhhhcceecCCCc
Q 012426 88 IQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKRV--------------------SREFLRTKAHLRPRTN 142 (464)
Q Consensus 88 V~G~v~~~~~-----~~~~~el~~~~i~vls~~~~~~P~~~~~~--------------------~~~~~r~~r~l~~R~~ 142 (464)
|.|+|++.+. ..|++||++.+|.|||.+.+.+|++.++. ..+++++||.||||||
T Consensus 143 v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLRtp 222 (533)
T KOG0556|consen 143 VRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLRTP 222 (533)
T ss_pred EEEEEecCCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecccc
Confidence 9999998653 35789999999999999998899875432 2345679999999999
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
+++++||+++.+..++|+||..+||+||+||+|.++++||++++|.| +||
T Consensus 223 tnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v------------------------------~Yf 272 (533)
T KOG0556|consen 223 TNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRV------------------------------SYF 272 (533)
T ss_pred cchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEE------------------------------Eec
Confidence 99999999999999999999999999999999999999999999987 599
Q ss_pred CcccccccchhHHHHH-HhhccCceEEEccccccCCCCCccccccchhccceeccCC-HHHHHHHHHHHHHHHHHHHhhc
Q 012426 223 EKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDN 300 (464)
Q Consensus 223 ~~~~yL~~Spql~lql-l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~dlm~~~e~li~~i~~~~~~~ 300 (464)
+.++||+||||||+|| ++++|+|||+||||||||+|+|+||+.||+-||.||+|.. |+++|+++.+++..|++.+.++
T Consensus 273 k~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~er 352 (533)
T KOG0556|consen 273 KQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRER 352 (533)
T ss_pred cCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 6788999999999999999999999999999999999984 9999999999999999999999
Q ss_pred CcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhh----hhcccCCCee
Q 012426 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----EEAFGGCPVI 376 (464)
Q Consensus 301 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~----e~~~~~~p~f 376 (464)
|..+|+..+++++.+-... + .|..+++|.|++++|++.|++. ...+||+++-|+.|+ +++.+ ++++
T Consensus 353 y~~Eie~Vr~qyp~e~fkf----~-~~~lrl~~~e~v~mLreaGvE~----g~~dDlsTe~Ek~LG~lV~eky~t-dfyi 422 (533)
T KOG0556|consen 353 YAKEIETVRKQYPFEPFKF----L-EPPLRLTFKEGVAMLREAGVEM----GDEDDLSTESEKKLGQLVREKYDT-DFYI 422 (533)
T ss_pred HHHHHHHHhhcCCCccccc----C-CCceEeehHHHHHHHHHcCccc----CCccccCChhHHHHHHHHHHHhCC-cEEE
Confidence 9999998888766543322 2 4567899999999999999853 345799999999885 45555 8999
Q ss_pred eeeCCCCCcccccccC-CCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh------
Q 012426 377 VSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS------ 449 (464)
Q Consensus 377 I~~yP~~~~pfy~~~~-~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~------ 449 (464)
+.+||.+++|||.+++ .||+++++||+|++| .||.+|.||+|||+.|.+|++++|+++..+..|||+++||+
T Consensus 423 ldkyP~avRPFYTmpd~~~p~ySnSyD~fmRG-eEIlSGAQRIhdpe~L~era~~hGid~~~i~~YidsFryG~PPHaGg 501 (533)
T KOG0556|consen 423 LDKYPLAVRPFYTMPDPENPRYSNSYDFFMRG-EEILSGAQRIHDPELLVERAKEHGIDPSKISTYIDSFRYGAPPHAGG 501 (533)
T ss_pred EccCccccccccccCCCCCCCcccchhheech-hhhhccccccCCHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999996665 467899999999999 69999999999999999999999999999999999999998
Q ss_pred --h---HhhhhcCCCCCCC
Q 012426 450 --G---LVFILIKVTNFLN 463 (464)
Q Consensus 450 --g---L~mll~~~~~I~~ 463 (464)
| ++|+++|.+|||-
T Consensus 502 GIGLERvvmlyl~L~nIR~ 520 (533)
T KOG0556|consen 502 GIGLERVVMLYLGLNNIRK 520 (533)
T ss_pred cccHHHHHHHHhcCCcchh
Confidence 2 8999999999983
No 21
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.7e-81 Score=702.89 Aligned_cols=412 Identities=17% Similarity=0.223 Sum_probs=345.3
Q ss_pred cccccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhhh-hcCCCC
Q 012426 6 GEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KSGLIT 81 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~~-~~~~l~ 81 (464)
++|.++++|+++.+. ..|++|+|+|||+++|.+||++|++|||++| .||||++++.. .++.+ +. |+
T Consensus 634 ~~~~~~~~~~~~~~~------~~~~~V~v~Grv~~~R~~G~~~F~~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~ 703 (1094)
T PRK02983 634 VGVPPTHTVAEALDA------PTGEEVSVSGRVLRIRDYGGVLFADLRDWSG--ELQVLLDASRLEQGSLADFRAA--VD 703 (1094)
T ss_pred CCCcCccCHHHHHHh------cCCCEEEEEEEEEEEeeCCCeEEEEEEeCCe--eEEEEEECCccchhhHHHHHhc--CC
Confidence 568899999999874 6788999999999999999999999999997 59999987642 24443 45 99
Q ss_pred CCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcccc---chhhhhhcceecCC-CccchhhhhHHHHHHHH
Q 012426 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPR-TNTFGAVARVRNALAYA 157 (464)
Q Consensus 82 ~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~---~~~~~r~~r~l~~R-~~~~~~~~~~rs~i~~~ 157 (464)
.||+|.|+|++.+++++ ++||.+++++++++|. .|+|.+.+ +.+.+.++||||+| ++.++++|++||+|+++
T Consensus 704 ~gd~V~v~G~v~~t~~g--e~ei~~~~i~ll~k~~--~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~ 779 (1094)
T PRK02983 704 LGDLVEVTGTMGTSRNG--TLSLLVTSWRLAGKCL--RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSAVVRA 779 (1094)
T ss_pred CCCEEEEEEEEEEcCCC--CEEEEEeEEEEEeccC--cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999875 4999999999999998 45555443 34556699999997 57899999999999999
Q ss_pred HHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH
Q 012426 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE 237 (464)
Q Consensus 158 ~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq 237 (464)
+|+||.++||+||+||+|+++.|++++++|. |++ ++|++++||+||||||||
T Consensus 780 iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~-t~~---------------------------~~~~~~~yLriSPELylK 831 (1094)
T PRK02983 780 VRETLVARGFLEVETPILQQVHGGANARPFV-THI---------------------------NAYDMDLYLRIAPELYLK 831 (1094)
T ss_pred HHHHHHHCCCEEEeCCEeeccCCCcccceeE-eee---------------------------cCCCccchhhcChHHHHH
Confidence 9999999999999999999999988899995 433 478999999999999996
Q ss_pred -HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc----------ccc
Q 012426 238 -TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE----------DMD 306 (464)
Q Consensus 238 -ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~----------~i~ 306 (464)
++++|++||||||||||||+++ .||||||||||+|++|.||+|+|+++|+||+++++.+.+.... .++
T Consensus 832 rLivgG~erVFEIg~~FRnE~~~-~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~~~~~~~~~~~~~i~ 910 (1094)
T PRK02983 832 RLCVGGVERVFELGRNFRNEGVD-ATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPVVMRPDGDGVLEPVD 910 (1094)
T ss_pred HHHhcccCceEEEcceecCCCCC-CCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcEEeeCCccccccccc
Confidence 6789999999999999999997 6999999999999999999999999999999999998754321 244
Q ss_pred ccccccccchHHHHhhhhCCCCC-CCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCc
Q 012426 307 FFNTWIEKGIIDRLSTVAERDFV-QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385 (464)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~-~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~ 385 (464)
+..+|.+.++.+++++..|.++. ..+.+++.+++++.|+++.....+|+.++..+|++ +|+.+. +|+||||||.+++
T Consensus 911 ~~~pf~rit~~eai~~~~g~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~-ve~~~~-~P~Fv~dyP~~~s 988 (1094)
T PRK02983 911 ISGPWPVVTVHDAVSEALGEEIDPDTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHL-VEDRTT-FPTFYTDFPTSVS 988 (1094)
T ss_pred cCCCceEEEHHHHHHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHH-HHhhcC-CCEEEECCCcccc
Confidence 55567777777777777776654 33555666667766765433223344445555554 666665 8999999999999
Q ss_pred ccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH-----cCCCccch---HHHHHHhhhhh--------
Q 012426 386 AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-----LKLNRDSY---WWYLDLRHYGS-------- 449 (464)
Q Consensus 386 pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~-----~g~~~~~~---~~yl~~~~~G~-------- 449 (464)
||||++++|+++++|||||++|+ ||+|||+|++||.+|++||++ .+.|++.+ +|||++++|||
T Consensus 989 pla~~~~~~p~~~erFdL~i~G~-Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~yGmPP~gG~Gi 1067 (1094)
T PRK02983 989 PLTRPHRSDPGLAERWDLVAWGV-ELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAMPPTGGLGM 1067 (1094)
T ss_pred cccccCCCCCCeeEEEEEEECCE-EEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHcCCCCCCeEEe
Confidence 99998888999999999999997 999999999999999998875 46677766 69999999998
Q ss_pred h---HhhhhcCCCCCCCC
Q 012426 450 G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 g---L~mll~~~~~I~~~ 464 (464)
| |+|++||. ||||+
T Consensus 1068 GiDRLvM~ltg~-sIRdv 1084 (1094)
T PRK02983 1068 GVDRLVMLLTGR-SIRET 1084 (1094)
T ss_pred eHHHHHHHHhCC-ChheE
Confidence 2 99999996 99986
No 22
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=4.7e-77 Score=631.41 Aligned_cols=406 Identities=21% Similarity=0.301 Sum_probs=321.7
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
++++|.++... .+|++|+|+|||+++|.+|+++|++|||++|. ||||++++...++.++. |+.||+|.|+
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~Gkl~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~--L~~esvV~V~ 71 (583)
T TIGR00459 2 RTHYCGQLRTE------HLGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQVK 71 (583)
T ss_pred CceeHhhcchh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCHHHHHHHhc--CCCCCEEEEE
Confidence 67899999864 78999999999999999999999999999984 99999876444666778 9999999999
Q ss_pred EEEEeCC-------CCCceEEEEEeeEEEEecCCCCCCCCcc-cc-chhhhhhcceecCCCccchhhhhHHHHHHHHHHH
Q 012426 90 GNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-RV-SREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (464)
Q Consensus 90 G~v~~~~-------~~~~~~el~~~~i~vls~~~~~~P~~~~-~~-~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ 160 (464)
|+|.+++ ...+++||.++++++||+|. .+|++.. .. +.+.+.++||||+|++.++++|++||+|++++|+
T Consensus 72 G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ 150 (583)
T TIGR00459 72 GKVSARPEGNINRNLDTGEIEILAESITLLNKSK-TPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRN 150 (583)
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9998754 34567999999999999996 5677653 22 3344459999999999999999999999999999
Q ss_pred HhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc-ccccchhHHHH-H
Q 012426 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA-FLTVSGQLNAE-T 238 (464)
Q Consensus 161 ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-yL~~Spql~lq-l 238 (464)
||.++||+||+||+|+++++||+++ |.+. . .+++..+ +|+|||||||| +
T Consensus 151 ff~~~gFiEVeTP~L~~s~~eGar~-f~vp-~---------------------------~~~~~~~y~L~qSpQlykq~l 201 (583)
T TIGR00459 151 FLDQQGFLEIETPMLTKSTPEGARD-YLVP-S---------------------------RVHKGEFYALPQSPQLFKQLL 201 (583)
T ss_pred HHHHCCCEEEECCeeccCCCCCCcc-eeee-e---------------------------ecCCCceeecCCCHHHHHHHH
Confidence 9999999999999999999998865 6342 1 1123333 49999999998 5
Q ss_pred HhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHH
Q 012426 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 318 (464)
Q Consensus 239 l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 318 (464)
|++|++||||||||||||++++.|| ||||||||||+|+|++|+|+++|+||+++++.+.+ +++..+|.+.++.+
T Consensus 202 ~v~G~ervfqI~~~FR~E~~~t~r~-pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v~~-----~~~~~pf~r~ty~e 275 (583)
T TIGR00459 202 MVSGVDRYYQIARCFRDEDLRADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKG-----IDLKKPFPVMTYAE 275 (583)
T ss_pred HhcccCcEEEEcceeeCCCCCCCCC-cccCcceeeecCCCHHHHHHHHHHHHHHHHHHHhC-----CCCCCCceEEEHHH
Confidence 7899999999999999999998888 99999999999999999999999999999998875 23446677777777
Q ss_pred HHhhhhCCCCC----------------------------------------------CCCHHHHHHHHHhcCCC------
Q 012426 319 RLSTVAERDFV----------------------------------------------QLSYTDAIELLIKAKKK------ 346 (464)
Q Consensus 319 ~l~~~~~~~~~----------------------------------------------~it~~ea~~~l~~~~~~------ 346 (464)
+++++ |.+-| +-..++..++.++.|.+
T Consensus 276 a~~~y-GsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 354 (583)
T TIGR00459 276 AMERY-GSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLK 354 (583)
T ss_pred HHHHH-CCCCCccccCcccccHHHhhccCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEE
Confidence 77654 33211 11223334444444432
Q ss_pred cccCCCcc---ccccHH-----HHH----------------------------------HhhhhcccCCCeeeeeCCCC-
Q 012426 347 FEFLVKWG---CDLQSE-----HER----------------------------------YLTEEAFGGCPVIVSDYPKE- 383 (464)
Q Consensus 347 ~~~~~~~~---~~l~~~-----~e~----------------------------------~l~e~~~~~~p~fI~~yP~~- 383 (464)
++....++ .-++.+ .+. -++++... +|+||+|||..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~~-~~~wV~dfPlfe 433 (583)
T TIGR00459 355 VNEDGINSPIKKFLDEKKGKILLERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDLF-SFLWVVDFPMFE 433 (583)
T ss_pred EcCCcCCCchhhhcCHHHHHHHHHHhCCCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCCc-eEEEEEeCCCcc
Confidence 11110000 000100 000 02222222 69999999997
Q ss_pred ----------CcccccccCCCCC---------ceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCcc----chHH
Q 012426 384 ----------IKAFYMRQNDDGR---------TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWW 440 (464)
Q Consensus 384 ----------~~pfy~~~~~d~~---------~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~ 440 (464)
..||.+++.+|.. .+++|||+++|+ ||+|||.|+||++.|+++|+..|++.+ .+.+
T Consensus 434 ~~~~~~~~a~hhPfT~p~~~d~~~l~~~p~~~~~~~yDLvlnG~-ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ 512 (583)
T TIGR00459 434 KDKEGRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGF 512 (583)
T ss_pred ccCCCceeeeECCCCCCCCCChhhhhcChhhhhhheeeEEEece-EecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8999998776655 789999999998 999999999999999999998898765 4799
Q ss_pred HHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 441 YLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 441 yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
||+|++||+ | |||+|||.+||||.
T Consensus 513 ll~Al~yG~PPhgG~alG~DRlvmlLt~~~sIRDV 547 (583)
T TIGR00459 513 LLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRDV 547 (583)
T ss_pred HHHHHhcCCCCcCceeccHHHHHHHHcCCCchhhe
Confidence 999999999 2 99999999999984
No 23
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-78 Score=603.06 Aligned_cols=419 Identities=18% Similarity=0.245 Sum_probs=361.8
Q ss_pred CcccccceecccccCCCCC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCc----cchhhh-
Q 012426 5 VGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA----EGYDQV- 75 (464)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~----~~~~~~- 75 (464)
.|+|-.++++.++.+.|.+ ++...+..|+|+|||+++|.+| |++|++|++++. +||||++.+. ..|.+.
T Consensus 77 phkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~--klQvm~~~~~~~~~~~F~~~~ 154 (560)
T KOG1885|consen 77 PHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGV--KLQVMANAKKITSEEDFEQLH 154 (560)
T ss_pred cchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCCe--EEEEEEehhhcCCHHHHHHHH
Confidence 5788899999999987765 5566678899999999999997 899999999963 6999999764 246554
Q ss_pred hcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccc---cchhhhhhcceecCCC-ccchhhhhHH
Q 012426 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRT-NTFGAVARVR 151 (464)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~---~~~~~~r~~r~l~~R~-~~~~~~~~~r 151 (464)
+. |++||+|+|.|.+.+|+.++ ++|.+.++.+|+||+.++| .+. .+.|.+-+.||+|+.. +.++..|++|
T Consensus 155 ~~--lkrGDiig~~G~pgrt~~gE--LSi~~~~~~lLspcLh~lP--~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~R 228 (560)
T KOG1885|consen 155 KF--LKRGDIIGVSGYPGRTKSGE--LSIIPNEIILLSPCLHMLP--HEHFGLKDKETRYRKRYLDLILNPEVRDRFRIR 228 (560)
T ss_pred hh--hhccCEEeeecCCCcCCCce--EEEeecchheecchhccCC--hhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 45 99999999999999998875 9999999999999995444 332 2345555799999986 4789999999
Q ss_pred HHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 012426 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (464)
Q Consensus 152 s~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~S 231 (464)
++|+..+|.||+++||+||+||+|...++++.++|| ||+||. ++..+||++|
T Consensus 229 akII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPF-IT~hnd---------------------------ldm~LylRiA 280 (560)
T KOG1885|consen 229 AKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPF-ITHHND---------------------------LDMDLYLRIA 280 (560)
T ss_pred HHHHHHHHHHhhhcCceEecchhhccccCccccCce-eecccc---------------------------cCcceeeeec
Confidence 999999999999999999999999999999999999 787763 5788999999
Q ss_pred hhHHH-HHHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc--------
Q 012426 232 GQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-------- 302 (464)
Q Consensus 232 pql~l-qll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~-------- 302 (464)
||||+ +|+++|++||||||+.||||++| .+||||||.+|+||||+||+|+|+++|+|++.+++.+.++++
T Consensus 281 PEL~lK~LvVGGldrVYEIGr~FRNEGID-lTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~ 359 (560)
T KOG1885|consen 281 PELYLKMLVVGGLDRVYEIGRQFRNEGID-LTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYKITYHPNGP 359 (560)
T ss_pred hHHHHHHHHhccHHHHHHHHHHhhhcCcc-cccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCceeEeecCCCC
Confidence 99999 58899999999999999999996 899999999999999999999999999999999999987653
Q ss_pred ----ccccccccccccchHHHHhhhhCCCCCC---CCHHHHHHHHHhc----CCCcccCCCccccccHHHHHHhhhhccc
Q 012426 303 ----EDMDFFNTWIEKGIIDRLSTVAERDFVQ---LSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEAFG 371 (464)
Q Consensus 303 ----~~i~~~~~~~~~~~~~~l~~~~~~~~~~---it~~ea~~~l~~~----~~~~~~~~~~~~~l~~~~e~~l~e~~~~ 371 (464)
-+++|..+|+++++++.|++.+|.+|+. +.-+|+-++|... ++++..|-..+..|+++.+.+|. +.+.
T Consensus 360 ~~~~~eldf~~pfrri~mi~~L~k~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE-~~cv 438 (560)
T KOG1885|consen 360 EEPELELDFTRPFRRIEMIEELEKELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLE-PTCV 438 (560)
T ss_pred CCCceeeeccCCeeeeeHHHHHHHHhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhc-cccC
Confidence 2588889999999999999999999974 5667777777664 44443344455678888887754 4666
Q ss_pred CCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc------CCCcc--chHHHHH
Q 012426 372 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRD--SYWWYLD 443 (464)
Q Consensus 372 ~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~------g~~~~--~~~~yl~ 443 (464)
+|+||+|+|..++|+++.+..++++++|||||+.| .||||+|.|++||..|++||.++ |.|.. ..+.|..
T Consensus 439 -nPTFi~~hP~imSPLAK~hrs~~glteRFElFi~~-kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ 516 (560)
T KOG1885|consen 439 -NPTFIIDHPQIMSPLAKYHRSKAGLTERFELFIAG-KEICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCT 516 (560)
T ss_pred -CCeeEcCCchhcCccccccccccchhhHHHHhhhh-HHHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHH
Confidence 79999999999999999999999999999999999 59999999999999999999854 44432 2488999
Q ss_pred Hhhhhh--------h---HhhhhcCCCCCCC
Q 012426 444 LRHYGS--------G---LVFILIKVTNFLN 463 (464)
Q Consensus 444 ~~~~G~--------g---L~mll~~~~~I~~ 463 (464)
|++||+ | |+|+||+..||+|
T Consensus 517 ALEYGlPPtgGwGmGIDRL~MllTds~~I~E 547 (560)
T KOG1885|consen 517 ALEYGLPPTGGWGMGIDRLVMLLTDSNNIRE 547 (560)
T ss_pred HHHcCCCCCCccccchhhhhhhhcCCcchhh
Confidence 999988 3 9999999999997
No 24
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-74 Score=563.23 Aligned_cols=392 Identities=30% Similarity=0.519 Sum_probs=350.3
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc-cchhhhhcCCCCCCcEEEEEEEEEeCCCC---Cce
Q 012426 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQGNVVPSQGS---KQK 101 (464)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V~G~v~~~~~~---~~~ 101 (464)
.+.|+.|+|.|||++.|.+++++||.||||+|. +|||++.+. ..|+.+ . |+.++.|.|.|++++.+.| .++
T Consensus 120 ~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gf--lqCVl~~kl~~~yd~~-~--Ls~essv~vYG~i~~~p~GK~apgg 194 (545)
T KOG0555|consen 120 ENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGF--LQCVLSDKLCQSYDAL-T--LSTESSVTVYGTIKKLPEGKSAPGG 194 (545)
T ss_pred cccCceEEeehhhHhhhhcCceEEEEEecCCce--EEEEEcchhhhhhccc-c--ccccceEEEEEEEecCcCCCCCCCC
Confidence 477999999999999999999999999999987 999999764 233332 3 9999999999999998654 367
Q ss_pred EEEEEeeEEEEecCCCC---CCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeec
Q 012426 102 VELKVNKIVLVGKSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178 (464)
Q Consensus 102 ~el~~~~i~vls~~~~~---~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~ 178 (464)
.||.|+-++|++.|... .|+. ...+++.++++|||-+|....+.++++|+.+++++|++|.+.|++||.+|.|...
T Consensus 195 hEl~vdy~Eiig~Apag~~~n~ln-e~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQT 273 (545)
T KOG0555|consen 195 HELNVDYWEIIGLAPAGGFDNPLN-EESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQT 273 (545)
T ss_pred ceEEeeeeeeecccCCCccccccc-ccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEE
Confidence 99999999999998754 4443 3456788899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCC
Q 012426 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENS 258 (464)
Q Consensus 179 ~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~ 258 (464)
.-||++.+|+. +|||.++||+||+||||+....++++||+|.++||||+|
T Consensus 274 QVEGGsTLFkl------------------------------dYyGEeAyLTQSSQLYLEtclpAlgdvy~I~~SyRAEkS 323 (545)
T KOG0555|consen 274 QVEGGSTLFKL------------------------------DYYGEEAYLTQSSQLYLETCLPALGDVYCIQQSYRAEKS 323 (545)
T ss_pred EecCcceEEee------------------------------cccCchhhccchhHHHHHHhhhhcCceeEecHhhhhhhh
Confidence 99999999976 799999999999999999999999999999999999999
Q ss_pred CCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc-cccccccccccchHHHHhhhhCCCCCCCCHHHHH
Q 012426 259 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 337 (464)
Q Consensus 259 ~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~-~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 337 (464)
.|+|||+|||++|+|++|.+++++|+-+|+|+...+..+++.... .+..+++.. +.+..||.|+.|+|||
T Consensus 324 rTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f---------~~P~~PFkRm~Y~dAI 394 (545)
T KOG0555|consen 324 RTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDF---------KAPKRPFKRMNYSDAI 394 (545)
T ss_pred hhhhhhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCC---------CCCCCchhcCCHHHHH
Confidence 999999999999999999999999999999999999999876432 333333321 2466799999999999
Q ss_pred HHHHhcCCCccc--CCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccC-CCCCceeeEEEeeCCccccccC
Q 012426 338 ELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGG 414 (464)
Q Consensus 338 ~~l~~~~~~~~~--~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~~~~~fdl~~~GigEi~~G 414 (464)
+.|+++++..+. ..++|+|+....|+.+.+.++ .|+|+++||..+++|||+.. +|++++++.|+++||||||+||
T Consensus 395 ~wLke~~vk~edg~~fefGdDI~eAaER~mtdtIg--~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGG 472 (545)
T KOG0555|consen 395 EWLKEHDVKKEDGTDFEFGDDIPEAAERKMTDTIG--VPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGG 472 (545)
T ss_pred HHHHhcCCcCccCcccccccchhhHHHHhhhhhcC--CceEEeeccccccceeeecccCccccceeeeeecCCccccccc
Confidence 999999765432 357899999999999998754 79999999999999998765 5779999999999999999999
Q ss_pred ccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 415 SQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 415 ~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|+|+.|.++|.+.+++.|+|+.+|.||+|.++||. | ++|||++.-+||||
T Consensus 473 SMRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~ 533 (545)
T KOG0555|consen 473 SMRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREV 533 (545)
T ss_pred eeeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCCCcccccHHHHHHHHhcccchhhe
Confidence 99999999999999999999999999999999987 2 89999999999998
No 25
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.3e-73 Score=602.41 Aligned_cols=411 Identities=21% Similarity=0.288 Sum_probs=310.8
Q ss_pred cccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc--cchhhhhcCCCCCCcE
Q 012426 8 FRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGAS 85 (464)
Q Consensus 8 ~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~--~~~~~~~~~~l~~g~~ 85 (464)
..++++|.+|... ++|++|+|+|||+++|++|+++|++|||++|. +|||++++. ..++.++. |+.||+
T Consensus 57 ~~rt~~cg~l~~~------~~gk~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~--L~~esv 126 (652)
T PLN02903 57 PSRSHLCGALSVN------DVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANR--LRNEYV 126 (652)
T ss_pred ccCCCchhhcchh------hCCCEEEEEEEEEEEecCCCcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhc--CCCCCE
Confidence 4578999999884 88999999999999999999999999999985 999998653 22455677 999999
Q ss_pred EEEEEEEEeCC-------CCCceEEEEEeeEEEEecCCCCCCCCcc-------ccchhhhhhcceecCCCccchhhhhHH
Q 012426 86 IWIQGNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVR 151 (464)
Q Consensus 86 V~V~G~v~~~~-------~~~~~~el~~~~i~vls~~~~~~P~~~~-------~~~~~~~r~~r~l~~R~~~~~~~~~~r 151 (464)
|.|+|+|..++ ...+++||.+++++|||+|..++|++.. ..+.+.++++||||+|++.++++|++|
T Consensus 127 V~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~R 206 (652)
T PLN02903 127 VAVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLR 206 (652)
T ss_pred EEEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHH
Confidence 99999999762 1236699999999999999655676542 246777889999999999999999999
Q ss_pred HHHHHHHHHHhhh-CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 012426 152 NALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (464)
Q Consensus 152 s~i~~~~r~ff~~-~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~ 230 (464)
|+|++++|+||.+ +||+||+||+|+++++||+++.|.+... ..+..+||+|
T Consensus 207 s~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~----------------------------~~g~~y~L~q 258 (652)
T PLN02903 207 HRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRV----------------------------QPGTFYALPQ 258 (652)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeeec----------------------------CCCcccccCC
Confidence 9999999999997 9999999999999999998876643211 1144557999
Q ss_pred chhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccc
Q 012426 231 SGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309 (464)
Q Consensus 231 Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~ 309 (464)
||||||| +|++|++|||||+||||||++++.|| ||||||||||+|+|++|+|+++|+|++++++.+.+. ++..
T Consensus 259 SPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~Rh-pEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~~-----~~~~ 332 (652)
T PLN02903 259 SPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKGV-----QLPN 332 (652)
T ss_pred CHHHHHHHHHhccCCcEEEEehhhccCCCCCCcc-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCC
Confidence 9999998 57899999999999999999998888 999999999999999999999999999999887642 1123
Q ss_pred cccccchHHHHhhhhCCCCCC------------------------------------------CCHH------HHHHHHH
Q 012426 310 TWIEKGIIDRLSTVAERDFVQ------------------------------------------LSYT------DAIELLI 341 (464)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~------------------------------------------it~~------ea~~~l~ 341 (464)
+|.+.++.++++++.. +=|. ++-. +.++...
T Consensus 333 PF~rity~eA~~~ygs-DKPDlRf~~~l~dv~~~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 411 (652)
T PLN02903 333 PFPRLTYAEAMSKYGS-DKPDLRYGLELVDVSDVFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAI 411 (652)
T ss_pred CceEEEHHHHHHHHcC-CCCcccCCceeeEhHHhhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHH
Confidence 4444444444433211 1111 0000 0011011
Q ss_pred hcC---CC---cc-c-CCCc--c--ccccHHH-HH-------------------------Hh-------hhhc--c---c
Q 012426 342 KAK---KK---FE-F-LVKW--G--CDLQSEH-ER-------------------------YL-------TEEA--F---G 371 (464)
Q Consensus 342 ~~~---~~---~~-~-~~~~--~--~~l~~~~-e~-------------------------~l-------~e~~--~---~ 371 (464)
+.| .. ++ . +... . ..|+.+. +. .| .+.+ . .
T Consensus 412 ~~g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~~ 491 (652)
T PLN02903 412 KSGAKGLAFLKVLDDGELEGIKALVESLSPEQAEQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPSR 491 (652)
T ss_pred HcCCCceEEEEEcCCCCccCccchhhcCCHHHHHHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 111 11 00 0 0000 0 0011100 00 01 1111 1 1
Q ss_pred CCCeeeeeCCCC------------CcccccccCCCC-----CceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCC
Q 012426 372 GCPVIVSDYPKE------------IKAFYMRQNDDG-----RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN 434 (464)
Q Consensus 372 ~~p~fI~~yP~~------------~~pfy~~~~~d~-----~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~ 434 (464)
..++||+|||.. ..||.++..+|- -.+..|||+++|+ ||+|||+|+||++.|+++|+..|++
T Consensus 492 ~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~~d~~~l~~~~a~~YDLVlNG~-EiggGS~Rih~~~~q~~~f~~~g~~ 570 (652)
T PLN02903 492 HSILWVTDFPMFEWNEDEQRLEALHHPFTAPNPEDMGDLSSARALAYDMVYNGV-EIGGGSLRIYRRDVQQKVLEAIGLS 570 (652)
T ss_pred ceEEEEEeCCCCCccCCCCceEecCCCCCCCCCcchhhhhhhhhhcceeEecce-eeccceEecCCHHHHHHHHHHcCCC
Confidence 258999999974 479988755432 3567899999998 9999999999999999999999999
Q ss_pred cc----chHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 435 RD----SYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 435 ~~----~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++ .+.|||+|++||+ | |+|+|+|.+||||.
T Consensus 571 ~e~~~~~F~~~l~a~~yG~PphgG~alGldRlvmll~~~~~Irdv 615 (652)
T PLN02903 571 PEEAESKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGAKSIRDV 615 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceeecHHHHHHHHcCCCchHhe
Confidence 75 5899999999998 3 99999999999984
No 26
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-73 Score=578.12 Aligned_cols=392 Identities=24% Similarity=0.384 Sum_probs=318.6
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCC-c-cchhhhhcCCCCCCcEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-A-EGYDQVKSGLITTGASIW 87 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~-~-~~~~~~~~~~l~~g~~V~ 87 (464)
||++|.+|... ++|++|+++|||++.|++|+++||||||.+|. +|||++++ . ..|+.+.. |+.|++|.
T Consensus 2 Rt~~cg~l~~~------~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~--lr~E~vi~ 71 (585)
T COG0173 2 RTHYCGELRES------HVGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFVIQ 71 (585)
T ss_pred CceeccccCHH------HCCCEEEEEeeeeeccccCCeEEEEcccCCCe--EEEEECCccCHHHHHHHHh--cCceEEEE
Confidence 68999999984 89999999999999999999999999999997 99999984 3 35777888 99999999
Q ss_pred EEEEEEeCCC-------CCceEEEEEeeEEEEecCCCCCCCCccc---cchhhhhhcceecCCCccchhhhhHHHHHHHH
Q 012426 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYA 157 (464)
Q Consensus 88 V~G~v~~~~~-------~~~~~el~~~~i~vls~~~~~~P~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~ 157 (464)
|+|+|.+.+. ..+++||++++|+|||+|. .+|++..+ .+.+.+++|||||||++.++..+++||++..+
T Consensus 72 V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s~-~lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~ 150 (585)
T COG0173 72 VTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASK-TLPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKA 150 (585)
T ss_pred EEEEEEecCccccCCCCCcceEEEEeeeEEEEecCC-CCCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999998754 3467999999999999986 45665433 44455669999999999999999999999999
Q ss_pred HHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH
Q 012426 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE 237 (464)
Q Consensus 158 ~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq 237 (464)
+|+||.++||+||+||+|+.+++||+.+....++.++ +.||. |.||||+|||
T Consensus 151 iR~~ld~~gF~EiETPiLtkSTPEGARDfLVPSRv~~------------------------G~FYA----LPQSPQlfKQ 202 (585)
T COG0173 151 IRNFLDDQGFLEIETPILTKSTPEGARDFLVPSRVHP------------------------GKFYA----LPQSPQLFKQ 202 (585)
T ss_pred HHHHHhhcCCeEeecCccccCCCccccccccccccCC------------------------Cceee----cCCCHHHHHH
Confidence 9999999999999999999999999888654443332 35775 8999999999
Q ss_pred -HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccch
Q 012426 238 -TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 316 (464)
Q Consensus 238 -ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~ 316 (464)
||++||+|+|||++|||+|+....|. |||||||+||+|.+-+|+|+++|+|++.+++.+.+-
T Consensus 203 LLMvsGfdRYyQIarCFRDEDlRaDRQ-PEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i---------------- 265 (585)
T COG0173 203 LLMVAGFDRYYQIARCFRDEDLRADRQ-PEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGI---------------- 265 (585)
T ss_pred HHHHhcccceeeeeeeecccccccccC-CcceeEeEEeecCCHHHHHHHHHHHHHHHHHHhcCC----------------
Confidence 58999999999999999999998999 999999999999999999999999999999987642
Q ss_pred HHHHhhhhCCCCCCCCHHHHHHHHHhcCCC------------------c---ccC-----------CCcccc--------
Q 012426 317 IDRLSTVAERDFVQLSYTDAIELLIKAKKK------------------F---EFL-----------VKWGCD-------- 356 (464)
Q Consensus 317 ~~~l~~~~~~~~~~it~~ea~~~l~~~~~~------------------~---~~~-----------~~~~~~-------- 356 (464)
.+..||+||||+||++.+...+-+ | ... +.-+..
T Consensus 266 ------~l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~ 339 (585)
T COG0173 266 ------ELKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDE 339 (585)
T ss_pred ------ccCCCcccccHHHHHHHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHH
Confidence 234478888888888776653110 0 000 000000
Q ss_pred ------------------------------ccHH-HHHH-------------------------h-------hhhc--c-
Q 012426 357 ------------------------------LQSE-HERY-------------------------L-------TEEA--F- 370 (464)
Q Consensus 357 ------------------------------l~~~-~e~~-------------------------l-------~e~~--~- 370 (464)
++.+ .+++ | .+.+ .
T Consensus 340 ~~~~ak~~gakGLa~ikv~~~~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~ 419 (585)
T COG0173 340 LTEFAKIYGAKGLAYIKVEEDGLKGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLID 419 (585)
T ss_pred HHHHHHHcCCCceEEEEEecCCccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCC
Confidence 0100 0100 0 0000 0
Q ss_pred --cCCCeeeeeCCCC------------CcccccccCCCC---------CceeeEEEeeCCccccccCccccccHHHHHHH
Q 012426 371 --GGCPVIVSDYPKE------------IKAFYMRQNDDG---------RTVAAMDMLVPRIGELIGGSQREERLEYLEGR 427 (464)
Q Consensus 371 --~~~p~fI~~yP~~------------~~pfy~~~~~d~---------~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r 427 (464)
.-.++||+|||.. ..||.|+...+. -.+..|||+++|+ ||+|||.|+|+++.|++-
T Consensus 420 ~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~-ElggGSiRIh~~eiQ~~v 498 (585)
T COG0173 420 KDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGY-ELGGGSIRIHDPEIQEKV 498 (585)
T ss_pred cccceEEEEEecCccCCccccCceecccCCCCCCCccchhhhhcCHHHhhhhhccEEeccE-eeccceeeeCCHHHHHHH
Confidence 0268999999974 479999865431 2478899999998 999999999999999999
Q ss_pred HHHcCCCcc----chHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 428 LDELKLNRD----SYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 428 ~~~~g~~~~----~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|+..|++++ .+...|+|++||+ | |||||+|..||||.
T Consensus 499 F~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll~g~~sIReV 550 (585)
T COG0173 499 FEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIRDV 550 (585)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCchhhe
Confidence 999999987 6788899999998 2 99999999999983
No 27
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=2e-72 Score=600.56 Aligned_cols=407 Identities=24% Similarity=0.334 Sum_probs=315.9
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
++++|.++... .+|++|+|+|||+++|.+|+++|++|||++|. +|||++.....++.++. |+.||+|.|+
T Consensus 4 r~~~~~~l~~~------~~g~~V~l~GwV~~~R~~g~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~--l~~es~V~V~ 73 (588)
T PRK00476 4 RTHYCGELRES------HVGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQVT 73 (588)
T ss_pred cceeHHHhhHH------hCCCEEEEEEEEEEEEeCCCeEEEEEEeCCce--EEEEEeCCHHHHHHHhC--CCCCCEEEEE
Confidence 78999999874 68999999999999999999999999999985 99999863334666778 9999999999
Q ss_pred EEEEeCCCC-------CceEEEEEeeEEEEecCCCCCCCCccc---cchhhhhhcceecCCCccchhhhhHHHHHHHHHH
Q 012426 90 GNVVPSQGS-------KQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATH 159 (464)
Q Consensus 90 G~v~~~~~~-------~~~~el~~~~i~vls~~~~~~P~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r 159 (464)
|+|.+++.+ .+++||.+++++|||+|. ++|++... .+.+.++++||||+|++.++++|++||++++++|
T Consensus 74 G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR 152 (588)
T PRK00476 74 GTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIR 152 (588)
T ss_pred EEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHH
Confidence 999987532 456999999999999997 67776422 3455556999999999999999999999999999
Q ss_pred HHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH-H
Q 012426 160 KFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-T 238 (464)
Q Consensus 160 ~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-l 238 (464)
+||.++||+||+||+|+++++||+++ |.+.. + .+.+..+||+|||||||| +
T Consensus 153 ~ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~-~--------------------------~~~~~~~~L~qSpql~kq~l 204 (588)
T PRK00476 153 NFLDDNGFLEIETPILTKSTPEGARD-YLVPS-R--------------------------VHPGKFYALPQSPQLFKQLL 204 (588)
T ss_pred HHHHHCCCEEEECCeeecCCCCCCcc-ceecc-c--------------------------ccCCceeecCCCHHHHHHHH
Confidence 99999999999999999999998765 75521 1 134555689999999998 5
Q ss_pred HhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHH
Q 012426 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 318 (464)
Q Consensus 239 l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 318 (464)
+++|++||||||||||||+++++||+ ||||||||++|+|++|+|+++|+||+++++.+.+. ++..+|.+.++.+
T Consensus 205 ~~~g~~rvfqi~~~FR~E~~~~~r~~-EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~-----~~~~pf~r~ty~e 278 (588)
T PRK00476 205 MVAGFDRYYQIARCFRDEDLRADRQP-EFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGV-----DLPTPFPRMTYAE 278 (588)
T ss_pred HhcccCceEEEeceeecCCCCCCcCc-ccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCc-----cCCCCceEEEHHH
Confidence 78999999999999999999998887 99999999999999999999999999999988642 2234566667777
Q ss_pred HHhhhhCCCCCCCCH----------------------------------------------HHHHHHHHhcCCC------
Q 012426 319 RLSTVAERDFVQLSY----------------------------------------------TDAIELLIKAKKK------ 346 (464)
Q Consensus 319 ~l~~~~~~~~~~it~----------------------------------------------~ea~~~l~~~~~~------ 346 (464)
+++.+ |.+-|.+.| ++..++.+..|.+
T Consensus 279 a~~~y-g~dkPDlR~~~eI~DVT~if~~s~f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~ 357 (588)
T PRK00476 279 AMRRY-GSDKPDLRFGLELVDVTDLFKDSGFKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIK 357 (588)
T ss_pred HHHHH-CCCCCcccCCceehhHHHHhccCCchhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEE
Confidence 66543 433332211 1111111111100
Q ss_pred cccCCCcc----ccccHH-HH-------------------------HHh-------hhhc-----ccCCCeeeeeCCCC-
Q 012426 347 FEFLVKWG----CDLQSE-HE-------------------------RYL-------TEEA-----FGGCPVIVSDYPKE- 383 (464)
Q Consensus 347 ~~~~~~~~----~~l~~~-~e-------------------------~~l-------~e~~-----~~~~p~fI~~yP~~- 383 (464)
+... .+. .-++.+ .+ +.| .+.+ ..-.++||+|||..
T Consensus 358 ~~~~-~l~~~~akflsee~~~~L~e~l~~k~GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~ 436 (588)
T PRK00476 358 VNED-GLKGPIAKFLSEEELAALLERTGAKDGDLIFFGADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFE 436 (588)
T ss_pred EcCC-CCcCchhhcCCHHHHHHHHHHhCCCCCCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCC
Confidence 0000 010 001110 00 001 1100 11258999999974
Q ss_pred -----------CcccccccCC--------CC--CceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCcc----ch
Q 012426 384 -----------IKAFYMRQND--------DG--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SY 438 (464)
Q Consensus 384 -----------~~pfy~~~~~--------d~--~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~----~~ 438 (464)
..||.|+..+ || -.+.+|||+++|+ ||+|||+|+||++.|+++|+..|++++ .+
T Consensus 437 ~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p~~~~a~~~dlv~ng~-E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~ 515 (588)
T PRK00476 437 YDEEEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYDLVLNGY-ELGGGSIRIHRPEIQEKVFEILGISEEEAEEKF 515 (588)
T ss_pred ccCCCCeeeeecCCCCCcCccChhHhhcCCHHHhhhheeeeEEeee-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4799987554 22 3578999999998 999999999999999999999999886 68
Q ss_pred HHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 439 WWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 439 ~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
.|||+|++||+ | |||+|+|.+||||+
T Consensus 516 ~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~~~irdv 552 (588)
T PRK00476 516 GFLLDALKYGAPPHGGIAFGLDRLVMLLAGADSIRDV 552 (588)
T ss_pred HHHHHHHhcCCCCCcceeccHHHHHHHHcCCccHHhe
Confidence 99999999998 2 99999999999985
No 28
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.7e-72 Score=565.68 Aligned_cols=300 Identities=43% Similarity=0.744 Sum_probs=268.7
Q ss_pred cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCC
Q 012426 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205 (464)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~ 205 (464)
+++++++++||||+|++..++++++||.|++++|+||.++||+||+||+|++++||+++++|++
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~---------------- 65 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV---------------- 65 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc----------------
Confidence 4678899999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCCCCccccccchhccceeccC-CHHHHHH
Q 012426 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMA 284 (464)
Q Consensus 206 ~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~~~dlm~ 284 (464)
+||++++||++|||||||++++|++|||+||||||||+++|.||||||||||||++|+ |++|+|+
T Consensus 66 --------------~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~ 131 (322)
T cd00776 66 --------------SYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMD 131 (322)
T ss_pred --------------ccCCCcceecCCHHHHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHH
Confidence 5899999999999999987666699999999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHH
Q 012426 285 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY 364 (464)
Q Consensus 285 ~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~ 364 (464)
++|+||++++..+.+++..++.+++. .......+..||++|||.||++++++.+.. .+..||.+++.++|++
T Consensus 132 ~~e~ll~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~rit~~eA~~~l~~~~~~--~~~~~~~~l~~~~e~~ 203 (322)
T cd00776 132 LIEELIKYIFKRVLERCAKELELVNQ------LNRELLKPLEPFPRITYDEAIELLREKGVE--EEVKWGEDLSTEHERL 203 (322)
T ss_pred HHHHHHHHHHHHHHhccHHHHhhhhc------cCcccccCCCCceEEEHHHHHHHHHHcCCC--CCCCccchhcHHHHHH
Confidence 99999999999999888777654310 001111235689999999999999988753 2357899999999999
Q ss_pred hhhhcccCCCeeeeeCCCCCcccccccCC-CCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHH
Q 012426 365 LTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 443 (464)
Q Consensus 365 l~e~~~~~~p~fI~~yP~~~~pfy~~~~~-d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~ 443 (464)
|++.+.+ +|+||+|||..++|||++.++ ++++++|||||++|++||+|||+|++|+++|++||+++|+++..++|||+
T Consensus 204 l~~~~~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~ 282 (322)
T cd00776 204 LGEIVKG-DPVFVTDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLD 282 (322)
T ss_pred HHHHhCC-CcEEEECCccccCCceeeecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 9876534 899999999999999986654 56899999999999669999999999999999999999999999999999
Q ss_pred Hhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 444 LRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 444 ~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|++||+ | |+|+++|.+|||||
T Consensus 283 a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv 314 (322)
T cd00776 283 LRKYGMPPHGGFGLGLERLVMWLLGLDNIREA 314 (322)
T ss_pred HHHCCCCCCceeeEhHHHHHHHHcCCCchheE
Confidence 999988 3 99999999999986
No 29
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=4.8e-71 Score=592.79 Aligned_cols=407 Identities=19% Similarity=0.270 Sum_probs=303.6
Q ss_pred ccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcE
Q 012426 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGAS 85 (464)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~ 85 (464)
.|+++|.+|... ..|++|+|+|||+++|++|+++|++|||++|. +|||++++. ..++.++. |+.||+
T Consensus 4 ~r~~~cg~l~~~------~~g~~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~--L~~Esv 73 (706)
T PRK12820 4 NDRSFCGHLSLD------DTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS--LRAEFC 73 (706)
T ss_pred ccccccccCChh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999984 78999999999999999999999999999985 999998653 23555777 999999
Q ss_pred EEEEEEEEeCCC-------CCceEEEEEeeEEEEecCCCCCCCC--ccc------------cchhhhhhcceecCCCccc
Q 012426 86 IWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQ--KKR------------VSREFLRTKAHLRPRTNTF 144 (464)
Q Consensus 86 V~V~G~v~~~~~-------~~~~~el~~~~i~vls~~~~~~P~~--~~~------------~~~~~~r~~r~l~~R~~~~ 144 (464)
|.|+|+|.+++. ..+++||.+++++||++|. .+|++ .+. .+.+.+.++||||+|++.+
T Consensus 74 V~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~ 152 (706)
T PRK12820 74 VALQGEVQKRLEETENPHIETGDIEVFVRELSILAASE-ALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAM 152 (706)
T ss_pred EEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecCC-CCCCCCcccccccccccccccccCHhhhhhCceeecCCHHH
Confidence 999999988531 2366999999999999996 45554 331 1344455899999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (464)
+++|++||++++++|+||.++||+||+||+|+++++||+++.+... .++..
T Consensus 153 ~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~-----------------------------~~~~~ 203 (706)
T PRK12820 153 QDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPS-----------------------------RIHPK 203 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEee-----------------------------ecCCC
Confidence 9999999999999999999999999999999999999887754221 12333
Q ss_pred cc-ccccchhHHHHH-HhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc
Q 012426 225 PA-FLTVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302 (464)
Q Consensus 225 ~~-yL~~Spql~lql-l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~ 302 (464)
.+ +|+||||||||+ |++|++|||||+||||||++++.|| ||||||||||+|+|++|+|+++|+||+++++ +..
T Consensus 204 ~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~v~~-~~~--- 278 (706)
T PRK12820 204 EFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTARMFA-IGG--- 278 (706)
T ss_pred cceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHHHHH-hcC---
Confidence 33 499999999985 6899999999999999999998777 9999999999999999999999999999986 211
Q ss_pred ccccccccccccchHHHHhhhhCCCCCC-------------------------------------------CCH---HHH
Q 012426 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQ-------------------------------------------LSY---TDA 336 (464)
Q Consensus 303 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~-------------------------------------------it~---~ea 336 (464)
+++..+|.+.++.++++.+ |.+=|. ++- +++
T Consensus 279 --~~~~~pf~r~ty~eA~~~y-G~DKPDlR~~~~l~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~ 355 (706)
T PRK12820 279 --IALPRPFPRMPYAEAMDTT-GSDRPDLRFDLKFADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNE 355 (706)
T ss_pred --cCCCCCceEEEHHHHHHHh-CCCCCccccCcEEEEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHH
Confidence 1222345454555544332 211111 111 110
Q ss_pred H--HHHHhcC---CC--------cccC------------------CCccccc----c---HHHHHHhh-------hhc--
Q 012426 337 I--ELLIKAK---KK--------FEFL------------------VKWGCDL----Q---SEHERYLT-------EEA-- 369 (464)
Q Consensus 337 ~--~~l~~~~---~~--------~~~~------------------~~~~~~l----~---~~~e~~l~-------e~~-- 369 (464)
+ +..+..| .. +..+ .+.|+.+ . ......|+ +.+
T Consensus 356 ~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l 435 (706)
T PRK12820 356 YAKEIAPSFGAKGMTWMRAEAGGLDSNIVQFFSADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGL 435 (706)
T ss_pred HHHHHHHHcCCCceEEEEECCCCcCCchhccCCHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCC
Confidence 1 1111111 00 0000 0011100 0 00000111 100
Q ss_pred c---cCCCeeeeeCCCC-----------CcccccccCCC--------C--CceeeEEEeeCCccccccCccccccHHHHH
Q 012426 370 F---GGCPVIVSDYPKE-----------IKAFYMRQNDD--------G--RTVAAMDMLVPRIGELIGGSQREERLEYLE 425 (464)
Q Consensus 370 ~---~~~p~fI~~yP~~-----------~~pfy~~~~~d--------~--~~~~~fdl~~~GigEi~~G~~r~~d~~~l~ 425 (464)
. .-.++||+|||.. ..||.++..+| + -.+..|||+++|+ ||+|||.|+||++.|+
T Consensus 436 ~~~~~~~flWV~dFPlfe~~~e~~~~a~HHPFT~p~~~d~~~l~~~~p~~~~~~~YDLV~nG~-E~ggGs~Rih~~~~q~ 514 (706)
T PRK12820 436 IPEGVFHPLWITDFPLFEATDDGGVTSSHHPFTAPDREDFDPGDIEELLDLRSRAYDLVVNGE-ELGGGSIRINDKDIQL 514 (706)
T ss_pred CCCCCceEEEEEeCCcccCCCCCCeeeeeCCCCCcCccChhhhccCChHHhhhheeeEEecce-eeccceEEeCCHHHHH
Confidence 0 1258899999984 48999875442 2 1467999999997 9999999999999999
Q ss_pred HHHHHcCCCcc----chHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 426 GRLDELKLNRD----SYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 426 ~r~~~~g~~~~----~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+.|+..|++++ .+.+||+|++||+ | |||+|+|.+||||+
T Consensus 515 ~~f~~lg~~~~~~~~~Fgf~l~a~~~G~pphgG~a~G~dRlvm~l~~~~sirdv 568 (706)
T PRK12820 515 RIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALGLDRVVSMILQTPSIREV 568 (706)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeccHHHHHHHHcCCccHHHh
Confidence 99999999875 4679999999999 2 99999999999985
No 30
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=4.5e-69 Score=542.99 Aligned_cols=297 Identities=25% Similarity=0.407 Sum_probs=262.3
Q ss_pred cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCC----CCceeeecCCCcccccC
Q 012426 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG----EQFCVTTLIPSSREAAE 201 (464)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~----~~F~vt~~~~~~~~~~~ 201 (464)
.+.+++.++|++++|++..+++|++||+|++++|+||.++||+||+||+|+++++++.+ .+|.+.
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~----------- 76 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQI----------- 76 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCcccc-----------
Confidence 35677889999999999999999999999999999999999999999999998776432 234221
Q ss_pred CCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCCCC--ccccccchhccceeccCCH
Q 012426 202 SPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADL 279 (464)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~~~ 279 (464)
..+||++++||++|||||||++++|++|||+||||||||++++ +||||||||||||++|+|+
T Consensus 77 ----------------~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~ 140 (335)
T PRK06462 77 ----------------SIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADL 140 (335)
T ss_pred ----------------ccccCCCceeeccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCH
Confidence 1268999999999999999999999999999999999999986 6999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccH
Q 012426 280 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 359 (464)
Q Consensus 280 ~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~ 359 (464)
+|+|+++|+||+++++.+.+++++++.+.+... ..+..||++|||.||+++|++.+.+. .++++++.
T Consensus 141 ~dlm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~---------~~~~~p~~rit~~eA~~~l~~~~~~~----~~~~~l~~ 207 (335)
T PRK06462 141 DEVMDLIEDLIKYLVKELLEEHEDELEFFGRDL---------PHLKRPFKRITHKEAVEILNEEGCRG----IDLEELGS 207 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCcc---------ccCCCCCeEEEHHHHHHHHHhcCCCc----chHHHHhH
Confidence 999999999999999999998887776654311 01246899999999999999877642 34778999
Q ss_pred HHHHHhhhhcccCCCeeeeeCCCCCcccccccC-CCCCceeeEEEeeC-CccccccCccccccHHHHHHHHHHcCCCccc
Q 012426 360 EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDS 437 (464)
Q Consensus 360 ~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~~~~~fdl~~~-GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~ 437 (464)
++|++|.+.+ . +||||||||..++|||++.+ +++++++|||||+| |+|||++|++|+|+++++.++++++|++++.
T Consensus 208 ~~E~~l~~~~-~-~p~fi~~yP~~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~ 285 (335)
T PRK06462 208 EGEKSLSEHF-E-EPFWIIDIPKGSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEK 285 (335)
T ss_pred HHHHHHHHHh-C-CCEEEECCChhhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHH
Confidence 9999987654 4 79999999999999998754 56789999999998 7899999999999999999999999999999
Q ss_pred hHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 438 YWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 438 ~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++|||+|++||+ | |+|+++|.+|||||
T Consensus 286 ~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~Irdv 323 (335)
T PRK06462 286 YKWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREV 323 (335)
T ss_pred HHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCchhee
Confidence 999999999988 3 99999999999997
No 31
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=2e-69 Score=548.29 Aligned_cols=296 Identities=37% Similarity=0.624 Sum_probs=247.0
Q ss_pred hhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCC
Q 012426 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI 207 (464)
Q Consensus 128 ~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~ 207 (464)
.++++++||||+|++..+++|++||+|++++|+||.++||+||+||+|++++++|++++|.+....
T Consensus 2 ~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~-------------- 67 (335)
T PF00152_consen 2 EETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEP-------------- 67 (335)
T ss_dssp HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEEST--------------
T ss_pred hhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccch--------------
Confidence 478899999999999999999999999999999999999999999999999999999999875311
Q ss_pred CCCCCCCccccccccCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHH
Q 012426 208 PKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 286 (464)
Q Consensus 208 ~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~ 286 (464)
.+||++++||++||||||| ++++|++|||+||||||||+++|.||||||||||||++|+|++++|+++
T Consensus 68 -----------~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~ 136 (335)
T PF00152_consen 68 -----------GKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLI 136 (335)
T ss_dssp -----------TEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHH
T ss_pred -----------hhhcccceecCcChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHH
Confidence 3689999999999999998 5677799999999999999998999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCccc-------------CCCc
Q 012426 287 TAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF-------------LVKW 353 (464)
Q Consensus 287 e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~-------------~~~~ 353 (464)
|+||+++++.+.++.... .. .-....+|++++|.||++.+...+.+... ...+
T Consensus 137 e~li~~i~~~~~~~~~~~-~~-------------~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 202 (335)
T PF00152_consen 137 EELIKYIFKELLENAKEL-SL-------------NIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEV 202 (335)
T ss_dssp HHHHHHHHHHHHHHHHHH-HT-------------CEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHC
T ss_pred HHHHHHHHHHHhccCccc-cc-------------cccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchH
Confidence 999999999987541110 00 01223468888999998888876533221 1123
Q ss_pred cccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCC-CceeeEEEeeCCccccccCccccccHHHHHHHHHHcC
Q 012426 354 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 432 (464)
Q Consensus 354 ~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~-~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g 432 (464)
|.++..++|+.|++.... +|+||+|||..++|||++.++++ ++++|||||++| +||||||+|+||+++|++||++.+
T Consensus 203 ~~~l~~~~e~~L~~~~~~-~p~fI~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g-~Ei~~G~~r~~d~~~l~~r~~~~~ 280 (335)
T PF00152_consen 203 GRLLSEEVEPYLVEKYFT-DPVFITDYPAEQSPFYKPPNDDDPGVAERFDLYIPG-GEIANGSQREHDPEELRERFEEQG 280 (335)
T ss_dssp HHHHHHHHHHHHHHHHSS-SEEEEEEEBGGGSTTTBBBSSSTTTBBSEEEEEETT-EEEEEEEEB--SHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcccC-CcEEEEecccccCcccccccccccccccceeEEEeC-EEEehHHhhhhHHHHHHHHhhhcc
Confidence 667888999988765555 89999999999999999988876 899999999999 599999999999999999999999
Q ss_pred CCccc----hHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 433 LNRDS----YWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 433 ~~~~~----~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++++. ++|||+|++||+ | |+|+++|.+|||||
T Consensus 281 ~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eRLvm~l~g~~~Irdv 327 (335)
T PF00152_consen 281 IDPEEEMPIDEWYLEALKYGMPPHGGFGLGLERLVMLLLGLKNIRDV 327 (335)
T ss_dssp HHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHHHHHHHHT-SSGGGG
T ss_pred cccccccchhHhHHHhhhccCcccCcceehHHHHHHHHcCCCcHHhe
Confidence 98887 999999999998 3 99999999999997
No 32
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=3.4e-63 Score=494.33 Aligned_cols=276 Identities=21% Similarity=0.257 Sum_probs=243.4
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeec-CCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITAS-DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~-~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 226 (464)
+++||.+++++|+||.++||+||+||+|+++ .+++++++|++...++ +++++++
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~-------------------------~~~~~~~ 55 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGP-------------------------DGEGRPL 55 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCC-------------------------CCCCcce
Confidence 5799999999999999999999999999998 5788999997632211 3567899
Q ss_pred ccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 012426 227 FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305 (464)
Q Consensus 227 yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i 305 (464)
||+|||||||| ++++|++|||+||||||||+++ +||||||||||||++|.|++|+|+++|+||+++++.+
T Consensus 56 yL~~Spql~lk~ll~~g~~rVfeigp~FRaE~~~-~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~~-------- 126 (304)
T TIGR00462 56 YLQTSPEYAMKRLLAAGSGPIFQICKVFRNGERG-RRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDP-------- 126 (304)
T ss_pred eeecCHHHHHHHHHhccCCCEEEEcCceeCCCCC-CCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------
Confidence 99999999997 7889999999999999999994 8999999999999999999999999999999998752
Q ss_pred cccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhh---hcc-cCCCeeeeeCC
Q 012426 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAF-GGCPVIVSDYP 381 (464)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~-~~~p~fI~~yP 381 (464)
..+|.+.++.+++++.++.++...+.+++.+++++.|+.+ .++.+++.++|+++++ +.+ .++|+||||||
T Consensus 127 --~~~~~~it~~ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP 200 (304)
T TIGR00462 127 --FAPWERLSYQEAFLRYAGIDPLTASLDELAAAAAAHGVRA----SEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYP 200 (304)
T ss_pred --CCCcEEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCC----CCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCc
Confidence 2467778899999999999988899999999999888653 4567888888888753 333 23799999999
Q ss_pred CCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH-------cCCCccch-HHHHHHhhhhh----
Q 012426 382 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGS---- 449 (464)
Q Consensus 382 ~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~-------~g~~~~~~-~~yl~~~~~G~---- 449 (464)
..++|||+..++++++++|||||++|+ ||+|||+|++|+++|++|+++ .|+++..+ +|||++++||+
T Consensus 201 ~~~~~~~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~ 279 (304)
T TIGR00462 201 ASQAALARISPDDPRVAERFELYIKGL-ELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECS 279 (304)
T ss_pred cccCcCccccCCCCCeeEEEEEEECCE-EEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCC
Confidence 999999987777889999999999997 999999999999999999975 78998888 68999999988
Q ss_pred ----h---HhhhhcCCCCCCCC
Q 012426 450 ----G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 ----g---L~mll~~~~~I~~~ 464 (464)
| |+|+++|.+|||||
T Consensus 280 G~GiGieRL~m~l~g~~~Ir~v 301 (304)
T TIGR00462 280 GVALGVDRLLMLALGADSIDDV 301 (304)
T ss_pred ceEEcHHHHHHHHhCCCchhhc
Confidence 3 99999999999996
No 33
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=6.7e-62 Score=489.99 Aligned_cols=279 Identities=19% Similarity=0.266 Sum_probs=232.0
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 012426 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (464)
Q Consensus 142 ~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (464)
+.++++|++||++++++|+||.++||+||+||+|+++++++++++|.+. .+|
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~----------------------------~~~ 53 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITH----------------------------HNA 53 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEec----------------------------cCC
Confidence 4678899999999999999999999999999999998888888999542 147
Q ss_pred cCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhc
Q 012426 222 FEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300 (464)
Q Consensus 222 f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~ 300 (464)
|++++||+|||||||| ++++|++|||+||||||||+++ +||||||||||||++|++++|+|+++|++|+++++.+.+.
T Consensus 54 ~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~-~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~ 132 (329)
T cd00775 54 LDMDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGID-LTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGK 132 (329)
T ss_pred CCcceeeccCHHHHHHHHHhcCCCcEEEEeccccCCCCC-CCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999996 5678999999999999999995 8999999999999999999999999999999999988765
Q ss_pred CcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhc---------------------CCCcccCCCccccccH
Q 012426 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA---------------------KKKFEFLVKWGCDLQS 359 (464)
Q Consensus 301 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~---------------------~~~~~~~~~~~~~l~~ 359 (464)
+ ++.+.+.. .....||+++||.||++.+... +.++..+..|+..++.
T Consensus 133 ~--~~~~~~~~----------~~~~~pf~rity~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 200 (329)
T cd00775 133 T--KIEYGGKE----------LDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDK 200 (329)
T ss_pred c--eeecCCcc----------ccCCCCceEEEHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 3 33332210 0113477888888887765321 1111122356767777
Q ss_pred HHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc------CC
Q 012426 360 EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KL 433 (464)
Q Consensus 360 ~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~------g~ 433 (464)
.+++++.+. ++ +|+||+|||+.++||||..++|+++++|||||++|+ ||+|||+|++|+++|++||++. +.
T Consensus 201 l~~~~ve~~-~~-~p~fi~~yP~~~~~f~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~ 277 (329)
T cd00775 201 LFEEFVEPT-LI-QPTFIIDHPVEISPLAKRHRSNPGLTERFELFICGK-EIANAYTELNDPFDQRERFEEQAKQKEAGD 277 (329)
T ss_pred HHHHHhccc-cC-CCEEEECCChHhCcCcCcCCCCCCeeEEEEeEECCE-EEEcccchhCCHHHHHHHHHHHHHHHHcCC
Confidence 888876554 44 799999999999999998777889999999999998 9999999999999999999763 66
Q ss_pred Cccc--hHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 434 NRDS--YWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 434 ~~~~--~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++.. ++|||++++||+ | |+|+++|.+||+||
T Consensus 278 ~~~~~~~~~yl~a~~~G~pp~~G~glGleRL~m~~~g~~~Irdv 321 (329)
T cd00775 278 DEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDV 321 (329)
T ss_pred CccccchHHHHHHHHCCCCCCCcEEecHHHHHHHHcCCCcHHhc
Confidence 6543 589999999998 3 99999999999986
No 34
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=1.7e-59 Score=459.51 Aligned_cols=242 Identities=24% Similarity=0.416 Sum_probs=217.1
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc--Ccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--EKP 225 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~~ 225 (464)
|++||++++++|+||.++||+||+||+|+++++|+++++|.+. |+ +++
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~------------------------------~~~~g~~ 50 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK------------------------------YNALGLD 50 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee------------------------------ecCCCCc
Confidence 5899999999999999999999999999999999999999762 34 899
Q ss_pred cccccchhHHHHH-HhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCccc
Q 012426 226 AFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED 304 (464)
Q Consensus 226 ~yL~~Spql~lql-l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~ 304 (464)
+||++|||+|+|+ +++|++|||+|+||||+|.. +.||++||||||||++|.|++|+|+++|+||+++++.+.+.+..+
T Consensus 51 ~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~e~~-~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~ 129 (269)
T cd00669 51 YYLRISPQLFKKRLMVGGLDRVFEINRNFRNEDL-RARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVT 129 (269)
T ss_pred EEeecCHHHHHHHHHhcCCCcEEEEecceeCCCC-CCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999975 67899999999999999955 799999999999999999999999999999999999998876655
Q ss_pred ccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCC
Q 012426 305 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384 (464)
Q Consensus 305 i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~ 384 (464)
+.... ..+..||++|||+||++.+. +|+||+|||..+
T Consensus 130 ~~~~~------------~~~~~~~~rit~~ea~~~~~-------------------------------~p~fi~d~P~~~ 166 (269)
T cd00669 130 YGFEL------------EDFGLPFPRLTYREALERYG-------------------------------QPLFLTDYPAEM 166 (269)
T ss_pred ccccc------------cccCCCceEeeHHHHHHHhC-------------------------------CceEEECCCccc
Confidence 43210 12346899999999988652 599999999999
Q ss_pred cccccccCC-CCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCcc----chHHHHHHhhhhh--------h-
Q 012426 385 KAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGS--------G- 450 (464)
Q Consensus 385 ~pfy~~~~~-d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~yl~~~~~G~--------g- 450 (464)
+|||++.++ ++++++|||||++|+ ||+|||+|+||+++|++||+++|++++ .++|||+|++||+ |
T Consensus 167 ~~fy~~~~~~~~~~~~~fdl~~~g~-Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGi 245 (269)
T cd00669 167 HSPLASPHDVNPEIADAFDLFINGV-EVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGI 245 (269)
T ss_pred CCCCCCcCCCCCCeEEEEEEeeCCE-EEeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHH
Confidence 999987654 578999999999996 999999999999999999999999998 8999999999988 3
Q ss_pred --HhhhhcCCCCCCCC
Q 012426 451 --LVFILIKVTNFLNC 464 (464)
Q Consensus 451 --L~mll~~~~~I~~~ 464 (464)
|+|+++|.+|||||
T Consensus 246 eRL~m~~~g~~~Irdv 261 (269)
T cd00669 246 DRLIMLMTNSPTIREV 261 (269)
T ss_pred HHHHHHHhCCCcHHHc
Confidence 99999999999997
No 35
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=5.9e-58 Score=457.04 Aligned_cols=281 Identities=17% Similarity=0.141 Sum_probs=230.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccC
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 223 (464)
..+|++|+.|++++|+||.++||+||+||+|+..+. ++...+|.+....+ ....+
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~------------------------~~~~~ 57 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGP------------------------GASQG 57 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccc------------------------cccCC
Confidence 468999999999999999999999999999987653 44455665421100 00227
Q ss_pred cccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc
Q 012426 224 KPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302 (464)
Q Consensus 224 ~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~ 302 (464)
+++||++|||++++ ++++|++|||+||||||||++ |.||++||||||||++|+|++|+|+++|+||+.++..
T Consensus 58 ~~~~L~~SPe~~~kr~la~~~~rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~------ 130 (306)
T PRK09350 58 KTLWLMTSPEYHMKRLLAAGSGPIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------ 130 (306)
T ss_pred cceEEecCHHHHHHHHhhccccceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc------
Confidence 89999999999995 788899999999999999999 8999999999999999999999999999999988752
Q ss_pred ccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCC--CcccCCCccccccHHHHHHhhhhcc-cCCCeeeee
Q 012426 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK--KFEFLVKWGCDLQSEHERYLTEEAF-GGCPVIVSD 379 (464)
Q Consensus 303 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~--~~~~~~~~~~~l~~~~e~~l~e~~~-~~~p~fI~~ 379 (464)
.+|...++.++++++++.++...+++++.+.+++.|. ......+|+..++..++.+ +++.+ .+.|+||+|
T Consensus 131 ------~~~~~i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~-ve~~l~~~~p~fi~~ 203 (306)
T PRK09350 131 ------EPAESLSYQQAFLRYLGIDPLSADKTQLREVAAKLGLSNIADEEEDRDTLLQLLFTFG-VEPNIGKEKPTFVYH 203 (306)
T ss_pred ------CCceEEEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHHH-HHHhcCCCCCEEEEc
Confidence 3455667888888888888878899898888877765 1111223443344444443 44433 236999999
Q ss_pred CCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH-------cCCCccch-HHHHHHhhhhh--
Q 012426 380 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGS-- 449 (464)
Q Consensus 380 yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~-------~g~~~~~~-~~yl~~~~~G~-- 449 (464)
||..++|||+..++++++++|||||++|+ ||+|||+|++|+++|++|+++ .|+++..+ +|||++++||+
T Consensus 204 yP~~~~~~a~~~~~~~~~~~rfdl~i~G~-Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~pp 282 (306)
T PRK09350 204 FPASQAALAKISTEDHRVAERFEVYFKGI-ELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPD 282 (306)
T ss_pred CccccCccccccCCCCCeeEEEEEEECCE-EEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCCC
Confidence 99999999998777889999999999998 999999999999999999974 78888888 56999999988
Q ss_pred ------h---HhhhhcCCCCCCCC
Q 012426 450 ------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 ------g---L~mll~~~~~I~~~ 464 (464)
| |+|+++|.+||||+
T Consensus 283 ~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 283 CSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred CCceEecHHHHHHHHcCCCCcccC
Confidence 3 99999999999986
No 36
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-56 Score=444.32 Aligned_cols=393 Identities=21% Similarity=0.312 Sum_probs=296.7
Q ss_pred ccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhh--hhcCCCCCCcEE
Q 012426 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ--VKSGLITTGASI 86 (464)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~--~~~~~l~~g~~V 86 (464)
+++..|.++... .+|+.|.+|||+...|.+|.+.|..|||..|. +|+.++.+.-...+ .+. ++.+|+|
T Consensus 33 ~~t~~~~el~~~------~vg~kv~l~GWl~~~~~~k~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~--v~~e~vv 102 (628)
T KOG2411|consen 33 SRTSLCGELSVN------DVGKKVVLCGWLELHRVHKMLTFFNLRDAYGI--VQQLLSPDSFPLAQKLEND--VPLEDVV 102 (628)
T ss_pred hhhccchhhccC------ccCCEEEEeeeeeeeeccccceEEEeeccCcc--eEEEecchhhhHHhcccCC--CChhheE
Confidence 556778777764 78999999999999999999999999999985 88888876532222 344 9999999
Q ss_pred EEEEEEEeCCC-------CCceEEEEEeeEEEEecCCCCCCCCccc-------cchhhhhhcceecCCCccchhhhhHHH
Q 012426 87 WIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR-------VSREFLRTKAHLRPRTNTFGAVARVRN 152 (464)
Q Consensus 87 ~V~G~v~~~~~-------~~~~~el~~~~i~vls~~~~~~P~~~~~-------~~~~~~r~~r~l~~R~~~~~~~~~~rs 152 (464)
.|+|+|+..+. ..+.+|+.++++++++++...+|+...+ .+..+.+.+||||||++.++..+|+||
T Consensus 103 ~v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS 182 (628)
T KOG2411|consen 103 QVEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRS 182 (628)
T ss_pred eeeeeEecccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHH
Confidence 99999987632 3467999999999999998778876432 344556699999999999999999999
Q ss_pred HHHHHHHHHhhhC-CcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 012426 153 ALAYATHKFFQEN-GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (464)
Q Consensus 153 ~i~~~~r~ff~~~-gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~S 231 (464)
.+...+|+||.++ ||+||+||.|-..++||+.+ |.|....+ .+.|| -|.||
T Consensus 183 ~~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~E-FvVPtr~~-----------------------~g~FY----aLpQS 234 (628)
T KOG2411|consen 183 NVVKKIRRYLNNRHGFVEVETPTLFKRTPGGARE-FVVPTRTP-----------------------RGKFY----ALPQS 234 (628)
T ss_pred HHHHHHHHHHhhhcCeeeccCcchhccCCCccce-eecccCCC-----------------------CCcee----ecCCC
Confidence 9999999999874 79999999999999998777 54432111 02455 49999
Q ss_pred hhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Q 012426 232 GQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 310 (464)
Q Consensus 232 pql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~ 310 (464)
||.||| ||++|++|+|||++|||+|++...|+ |||||+|+||+|.+.+|+|+++|+++++++....+.
T Consensus 235 PQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQ-PEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~~---------- 303 (628)
T KOG2411|consen 235 PQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQ-PEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKGI---------- 303 (628)
T ss_pred HHHHHHHHHHhchhhHHhHHhhhcccccCcccC-CcceeeeeEEeccCHHHHHHHHHHHHHHhchhhcCC----------
Confidence 999999 58999999999999999999987776 899999999999999999999999999998776541
Q ss_pred ccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCC--Ccc----------------------------------------
Q 012426 311 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK--KFE---------------------------------------- 348 (464)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~--~~~---------------------------------------- 348 (464)
-+..||+||||+||++.+....- .+.
T Consensus 304 ------------~l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~ 371 (628)
T KOG2411|consen 304 ------------QLPVPFPRITYADAMDKYGSDKPDTRFPLKLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYSNSN 371 (628)
T ss_pred ------------CCCCCcccccHHHHHHHhCCCCCcccCCcEecchHHhhhhhhhhhhhcCCccceEEEEeccccccchh
Confidence 12234555555555544432100 000
Q ss_pred -------------------cC------CCccccc---------------------------------------------c
Q 012426 349 -------------------FL------VKWGCDL---------------------------------------------Q 358 (464)
Q Consensus 349 -------------------~~------~~~~~~l---------------------------------------------~ 358 (464)
.+ -.|-..+ .
T Consensus 372 ~~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~ 451 (628)
T KOG2411|consen 372 YKKRKIYESLGKSGFVGLPFPIEHDANKNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQ 451 (628)
T ss_pred hHHhHHHHHHhhcccccceeeeeccchhhhhhhchhhccchHHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHHHHH
Confidence 00 0011000 0
Q ss_pred HHHHHHhhhhcccCCCeeeeeCCCCC-------------cccccccCCC-------C--CceeeEEEeeCCccccccCcc
Q 012426 359 SEHERYLTEEAFGGCPVIVSDYPKEI-------------KAFYMRQNDD-------G--RTVAAMDMLVPRIGELIGGSQ 416 (464)
Q Consensus 359 ~~~e~~l~e~~~~~~p~fI~~yP~~~-------------~pfy~~~~~d-------~--~~~~~fdl~~~GigEi~~G~~ 416 (464)
.++.+-+.++ ......||+|||... .||.+++.+| + -....|||+++|+ ||.|||.
T Consensus 452 ~l~~~~l~d~-~~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqhYDlV~NGv-ElGGGSi 529 (628)
T KOG2411|consen 452 DLLVKNLRDK-SKFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIRGQHYDLVVNGV-ELGGGSI 529 (628)
T ss_pred HHHhcccccc-ccceEEEEEeccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhhcceeeeEEccE-eecCcee
Confidence 0111111111 112578999999863 6888877653 1 2346799999998 9999999
Q ss_pred ccccHHHHHHHHHHcC-CCccchH--HHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 417 REERLEYLEGRLDELK-LNRDSYW--WYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 417 r~~d~~~l~~r~~~~g-~~~~~~~--~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|+|+++.|+.-++.-. ++.+.+. ..|+|+.+|+ | |+|+++|.+||||.
T Consensus 530 RIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGlDRlvaml~~a~sIRDV 591 (628)
T KOG2411|consen 530 RIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGLDRLVAMLTGAPSIRDV 591 (628)
T ss_pred EecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecHHHHHHHHcCCCchhee
Confidence 9999999999888654 4433333 5699999998 2 99999999999983
No 37
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=3.6e-54 Score=424.14 Aligned_cols=252 Identities=26% Similarity=0.377 Sum_probs=199.6
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~y 227 (464)
+++||+|++++|+||.++||+||+||+|++++++|+++ |.+.. . ...+..+|
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~-~--------------------------~~~~~~~~ 52 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPS-R--------------------------LHPGKFYA 52 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceecc-c--------------------------cCCCceee
Confidence 58999999999999999999999999999988887755 75421 0 11234556
Q ss_pred cccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCccccc
Q 012426 228 LTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMD 306 (464)
Q Consensus 228 L~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~ 306 (464)
|+|||||||| ++++|++|||+|+||||+|++++.||+ ||||+|||++|+|++|+|+++|+||++++..+.+.
T Consensus 53 L~~Spql~lk~ll~~g~~~v~~i~~~fR~e~~~~~r~~-Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~------ 125 (280)
T cd00777 53 LPQSPQLFKQLLMVSGFDRYFQIARCFRDEDLRADRQP-EFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV------ 125 (280)
T ss_pred cccCHHHHHHHHHhcCcCcEEEeccceeCCCCCCCccc-eeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC------
Confidence 9999999998 567999999999999999999877775 99999999999999999999999999999887642
Q ss_pred ccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeee-CCCCCc
Q 012426 307 FFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD-YPKEIK 385 (464)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~-yP~~~~ 385 (464)
....||++|||.||++.+. . .+.|+.++... +..+. .+.++++++ ||....
T Consensus 126 ----------------~~~~p~~rity~eA~~~~~---~----~~~~~~d~~~~-~~~~~----~~~~~~~~~pf~~~~~ 177 (280)
T cd00777 126 ----------------ELTTPFPRMTYAEAMERYG---F----KFLWIVDFPLF-EWDEE----EGRLVSAHHPFTAPKE 177 (280)
T ss_pred ----------------CCCCCCceeeHHHHHHHhC---C----CCccccCCccc-CChhH----HHHHHHHhCCCcCCCc
Confidence 1235899999999998753 2 23466554310 00000 113444554 444332
Q ss_pred ---ccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCC----ccchHHHHHHhhhhh--------h
Q 012426 386 ---AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGS--------G 450 (464)
Q Consensus 386 ---pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~----~~~~~~yl~~~~~G~--------g 450 (464)
|+++..+++ ++++|||||++|+ ||+|||+|+||+++|++||++.|++ ++.++|||++++||+ |
T Consensus 178 ~~~~~~~~~~~~-~~~~~fdl~~~G~-Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giG 255 (280)
T cd00777 178 EDLDLLEKDPED-ARAQAYDLVLNGV-ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALG 255 (280)
T ss_pred ccchhhhcCCcc-CeeEEEEEEeCCE-EEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEh
Confidence 243332223 7999999999997 9999999999999999999999998 456899999999988 3
Q ss_pred ---HhhhhcCCCCCCCC
Q 012426 451 ---LVFILIKVTNFLNC 464 (464)
Q Consensus 451 ---L~mll~~~~~I~~~ 464 (464)
|+|+++|.+|||||
T Consensus 256 idRL~m~~~g~~~Irdv 272 (280)
T cd00777 256 LDRLVMLLTGSESIRDV 272 (280)
T ss_pred HHHHHHHHcCCCchheE
Confidence 99999999999986
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-49 Score=373.45 Aligned_cols=281 Identities=19% Similarity=0.160 Sum_probs=229.0
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
....+..|+.|+++||.||.++||+||+||.|+.+. .+.+-.+|++....+ ..--
T Consensus 12 ~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~------------------------~~~~ 67 (322)
T COG2269 12 SIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGP------------------------GGAK 67 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEecc------------------------Cccc
Confidence 344588999999999999999999999999999865 578888887654332 0111
Q ss_pred CcccccccchhHHH-HHHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcC
Q 012426 223 EKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301 (464)
Q Consensus 223 ~~~~yL~~Spql~l-qll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~ 301 (464)
+++.||++|||+|| +|+++|-+++||||+||||++. +++|+|||||||||+++.||+.+|+.+.+|+..++....
T Consensus 68 ~~~l~L~TSPEy~mKrLLAag~~~ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~~--- 143 (322)
T COG2269 68 GKPLWLHTSPEYHMKRLLAAGSGPIFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECVE--- 143 (322)
T ss_pred cceeeeecCcHHHHHHHHHccCCcchhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccCC---
Confidence 68999999999999 6999999999999999999997 799999999999999999999999999999988876542
Q ss_pred cccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhh-cccCCCeeeeeC
Q 012426 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE-AFGGCPVIVSDY 380 (464)
Q Consensus 302 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~-~~~~~p~fI~~y 380 (464)
....++.+++..++|.+.....-++..+.+.+.|+......+|.+.++..+-.. +|+ ++.++|+||+||
T Consensus 144 ---------~E~ls~~eaF~r~~gid~l~~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~-VEP~lg~~rpt~ly~f 213 (322)
T COG2269 144 ---------AERLSYQEAFLRYLGIDPLSADKTELREAAAKLGLSAATDEDWDTLLQLLFVEG-VEPNLGKERPTFLYHF 213 (322)
T ss_pred ---------cceeeHHHHHHHHhCCCcccccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhh-cCcccCCCCceEEEeC
Confidence 224577788888999887776666666777777776433345554444433333 333 456689999999
Q ss_pred CCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH-------cCCCccc-hHHHHHHhhh-----
Q 012426 381 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDS-YWWYLDLRHY----- 447 (464)
Q Consensus 381 P~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~-------~g~~~~~-~~~yl~~~~~----- 447 (464)
|..+..+++..+.|+++++|||||++|| ||+||+.|++|+.+|++||+. .|+..-+ .++||.|+..
T Consensus 214 P~~qaaLA~i~~~D~rVAERFElY~kGi-ELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~mP~cS 292 (322)
T COG2269 214 PASQAALAQISTGDPRVAERFELYYKGI-ELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALARMPPCS 292 (322)
T ss_pred cHHHHHhhccCCCCcchhhhhhheeeee-eecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999 999999999999999999973 2343333 4889999986
Q ss_pred hh--h---HhhhhcCCCCCCC
Q 012426 448 GS--G---LVFILIKVTNFLN 463 (464)
Q Consensus 448 G~--g---L~mll~~~~~I~~ 463 (464)
|+ | ||||++|..+|.|
T Consensus 293 GvALG~DRLvmLalg~~~i~~ 313 (322)
T COG2269 293 GVALGFDRLVMLALGAESIDD 313 (322)
T ss_pred cceecHHHHHHHHcCcchHHH
Confidence 33 4 9999999999875
No 39
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.87 E-value=1.4e-21 Score=172.86 Aligned_cols=122 Identities=18% Similarity=0.339 Sum_probs=101.4
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc-hhhhhcCCCCCCcEEEEE
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~ 89 (464)
+++++++... ..|+.|+|+|||+++|.+|+++|++|+|++| .+|+|++.+... ++.++. |+.||+|.|+
T Consensus 2 ~~~~~~~~~~------~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g--~~Q~v~~~~~~~~~~~~~~--l~~gs~V~V~ 71 (135)
T cd04317 2 THYCGELRES------HVGQEVTLCGWVQRRRDHGGLIFIDLRDRYG--IVQVVFDPEEAPEFELAEK--LRNESVIQVT 71 (135)
T ss_pred ceehhhCChh------HCCCEEEEEEeEehhcccCCEEEEEEecCCe--eEEEEEeCCchhHHHHHhC--CCCccEEEEE
Confidence 4667777653 5689999999999999999999999999997 499999865433 556777 9999999999
Q ss_pred EEEEeCCC-------CCceEEEEEeeEEEEecCCCCCCCCccc---cchhhhhhcceecCCCcc
Q 012426 90 GNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNT 143 (464)
Q Consensus 90 G~v~~~~~-------~~~~~el~~~~i~vls~~~~~~P~~~~~---~~~~~~r~~r~l~~R~~~ 143 (464)
|++..++. ..+++||.++++++|++| .++|+..+. .+.+++.++||||||++.
T Consensus 72 G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 72 GKVRARPEGTVNPKLPTGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred EEEECCCccccCCCCCCCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 99997542 345699999999999999 578887654 357788899999999974
No 40
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.84 E-value=3.4e-20 Score=156.22 Aligned_cols=101 Identities=27% Similarity=0.486 Sum_probs=89.3
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc--cchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEee
Q 012426 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (464)
Q Consensus 31 ~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~ 108 (464)
+|+|+|||+++|.+|+++|++|||++|. +|+|++.+. ..++.++. |+.||+|.|+|++.+++...+++||++++
T Consensus 1 ~V~v~Gwv~~~R~~gk~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~--l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~ 76 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKK--VGIESSVIVEGAVKADPRAPGGAEVHGEK 76 (103)
T ss_pred CEEEEEEEEeEEcCCCeEEEEEecCCee--EEEEEeCCCCHHHHHHHhC--CCCCCEEEEEEEEEECCCCCCCEEEEEEE
Confidence 3899999999999999999999999974 999998652 33566777 99999999999999988777789999999
Q ss_pred EEEEecCCCCCCCCccccchhhhhhccee
Q 012426 109 IVLVGKSDPSYPIQKKRVSREFLRTKAHL 137 (464)
Q Consensus 109 i~vls~~~~~~P~~~~~~~~~~~r~~r~l 137 (464)
++++|+|. ++|++.+. +.++++++|||
T Consensus 77 i~vl~~a~-~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 77 LEIIQNVE-FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEEecCC-CCccCCCC-CHHHHhhccCC
Confidence 99999996 79998764 89999999997
No 41
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.81 E-value=3.6e-19 Score=151.26 Aligned_cols=102 Identities=19% Similarity=0.379 Sum_probs=87.3
Q ss_pred ecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcEEEEE
Q 012426 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~V~ 89 (464)
+|.++.. ...|+.|+|+|||+++|.+|+++|++|||++|. +|+|++.+. ..++.++. |+.||+|.|+
T Consensus 2 ~~~~l~~------~~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~es~V~V~ 71 (108)
T cd04316 2 YSAEITP------ELDGEEVTVAGWVHEIRDLGGIKFVILRDREGI--VQVTAPKKKVDKELFKTVRK--LSRESVISVT 71 (108)
T ss_pred ChhhCch------hhCCCEEEEEEEEEeeeccCCeEEEEEecCCee--EEEEEeCCCCCHHHHHHHhC--CCCcCEEEEE
Confidence 4566654 357899999999999999999999999999974 999998653 23666778 9999999999
Q ss_pred EEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcc
Q 012426 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK 124 (464)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~ 124 (464)
|++.+++...+++||+++++++++++..++|++.+
T Consensus 72 G~v~~~~~~~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 72 GTVKAEPKAPNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred EEEEeCCCCCCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 99999887777899999999999999877888643
No 42
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.80 E-value=3.7e-19 Score=151.23 Aligned_cols=104 Identities=21% Similarity=0.315 Sum_probs=83.7
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 31 ~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
+|+|+|||+++|.+|+++|++|+|+++ .+|+|++.+. ..|..+.+ .|+.||+|.|+|++.+++++ ++||.++
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~--~lQ~v~~~~~~~~~~~~~~~~-~l~~g~~V~v~G~v~~~~~g--~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESG--KIQVYVNKDDLGEEEFEDFKK-LLDLGDIIGVTGTPFKTKTG--ELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCe--EEEEEEECCCCCHHHHHHHHh-cCCCCCEEEEEEEEEecCCC--CEEEEeC
Confidence 389999999999999999999999986 5999998653 33444322 29999999999999999874 4999999
Q ss_pred eEEEEecCCCCCCCCccc-cchhhhhhcceecC
Q 012426 108 KIVLVGKSDPSYPIQKKR-VSREFLRTKAHLRP 139 (464)
Q Consensus 108 ~i~vls~~~~~~P~~~~~-~~~~~~r~~r~l~~ 139 (464)
+++|+|+|..++|+.... .+.++++++||||+
T Consensus 76 ~~~ils~~~~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 76 EFTLLSKSLRPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeEEeeccCCCCCCCccCcCChhheeecccccC
Confidence 999999997444443322 35677789999985
No 43
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.73 E-value=4e-17 Score=137.23 Aligned_cols=89 Identities=24% Similarity=0.377 Sum_probs=75.3
Q ss_pred EEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCc-----cchhhhhcCCCCCCcEEEEEEEEEeCCCC-----C
Q 012426 31 MIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQVKSGLITTGASIWIQGNVVPSQGS-----K 99 (464)
Q Consensus 31 ~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~-----~~~~~~~~~~l~~g~~V~V~G~v~~~~~~-----~ 99 (464)
.|+|+|||+++|.+| +++|++|||++| .+|+|++.+. ..++.++. |+.||+|.|+|++.+++.. .
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~ 76 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGY--TIQGVLAASAEGVSKQMVKWAGS--LSKESIVDVEGTVKKPEEPIKSCTQ 76 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCc--eEEEEEeCCcccCCHHHHHHHhc--CCCccEEEEEEEEECCCCcccCCCc
Confidence 389999999999998 999999999997 4999998653 12344677 9999999999999987552 2
Q ss_pred ceEEEEEeeEEEEecCCCCCCCCc
Q 012426 100 QKVELKVNKIVLVGKSDPSYPIQK 123 (464)
Q Consensus 100 ~~~el~~~~i~vls~~~~~~P~~~ 123 (464)
+++||+++++++|++|..++|++.
T Consensus 77 ~~~El~~~~i~il~~~~~~~P~~~ 100 (102)
T cd04320 77 QDVELHIEKIYVVSEAAEPLPFQL 100 (102)
T ss_pred CcEEEEEEEEEEEecCCCCCCCCC
Confidence 679999999999999976788864
No 44
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.73 E-value=4.9e-17 Score=131.20 Aligned_cols=82 Identities=40% Similarity=0.791 Sum_probs=73.5
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEE
Q 012426 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 31 ~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (464)
.|+|+|||+++|.+|+++|++|||+++..++||+++++...++.++. |+.||+|.|+|.+.+++.+.+++||++++++
T Consensus 1 ~v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~--l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~ 78 (82)
T cd04318 1 EVTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEILK--LSTGSSIRVEGVLVKSPGAKQPFELQAEKIE 78 (82)
T ss_pred CEEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcccCHHHHhc--CCCceEEEEEEEEEeCCCCCCCEEEEEEEEE
Confidence 38999999999999999999999999866799999877555667788 9999999999999999876778999999999
Q ss_pred EEec
Q 012426 111 LVGK 114 (464)
Q Consensus 111 vls~ 114 (464)
+++.
T Consensus 79 il~~ 82 (82)
T cd04318 79 VLGE 82 (82)
T ss_pred EecC
Confidence 9863
No 45
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.70 E-value=1.1e-16 Score=130.32 Aligned_cols=81 Identities=20% Similarity=0.391 Sum_probs=71.4
Q ss_pred EEEEEEEEeeeec-CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCC----ceEEEE
Q 012426 31 MIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK----QKVELK 105 (464)
Q Consensus 31 ~V~v~GwV~~iR~-~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~----~~~el~ 105 (464)
+|+|+|||+++|. +|+++|++|||++| ..+||+++++...|+.++. |+.||+|.|+|++..++.+. +++||.
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~--l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~ 77 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG-DIIQLVSTAKKDAFSLLKS--ITAESPVQVRGKLQLKEAKSSEKNDEWELV 77 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC-CEEEEEECCCHHHHHHHhc--CCCCcEEEEEEEEEeCCCcCCCCCCCEEEE
Confidence 3899999999999 68999999999998 4699999876556777788 99999999999999988654 779999
Q ss_pred EeeEEEEec
Q 012426 106 VNKIVLVGK 114 (464)
Q Consensus 106 ~~~i~vls~ 114 (464)
++++++|++
T Consensus 78 ~~~i~il~~ 86 (86)
T cd04321 78 VDDIQTLNA 86 (86)
T ss_pred EEEEEEecC
Confidence 999999984
No 46
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.68 E-value=3.2e-16 Score=127.03 Aligned_cols=80 Identities=29% Similarity=0.559 Sum_probs=71.0
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc-hhhhhcCCCCCCcEEEEEEEEEeCCCC---CceEEEEE
Q 012426 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGS---KQKVELKV 106 (464)
Q Consensus 31 ~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~G~v~~~~~~---~~~~el~~ 106 (464)
.|+|+|||+++|.+|+++|++|||++|. +|++++.+... ++.++. |+.||+|.|+|++.+++.+ .+++||++
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~ 76 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKS--LTQESSVEVTGEVKEDPRAKQAPGGYELQV 76 (84)
T ss_pred CEEEEEEEEEEecCCCcEEEEEEcCCeE--EEEEEcCCcchhHHHHhc--CCCcCEEEEEEEEEECCcccCCCCCEEEEE
Confidence 3899999999999999999999999975 99999865433 566778 9999999999999999877 77899999
Q ss_pred eeEEEEec
Q 012426 107 NKIVLVGK 114 (464)
Q Consensus 107 ~~i~vls~ 114 (464)
+++++||+
T Consensus 77 ~~i~vl~~ 84 (84)
T cd04323 77 DYLEIIGE 84 (84)
T ss_pred EEEEEEcC
Confidence 99999985
No 47
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.66 E-value=8.9e-16 Score=124.69 Aligned_cols=80 Identities=25% Similarity=0.548 Sum_probs=70.0
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc--hhhhhcCCCCCCcEEEEEEEEEeCCC---CCceEEEE
Q 012426 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQG---SKQKVELK 105 (464)
Q Consensus 31 ~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~--~~~~~~~~l~~g~~V~V~G~v~~~~~---~~~~~el~ 105 (464)
.|+|+|||+++|.+|+++|++|||+++ .+|++++.+... ++.++. |+.||+|.|+|++.+++. ..+++||.
T Consensus 1 ~V~i~Gwv~~~R~~g~~~Fi~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~--l~~~s~V~v~G~~~~~~~~~~~~~~~El~ 76 (85)
T cd04100 1 EVTLAGWVHSRRDHGGLIFIDLRDGSG--IVQVVVNKEELGEFFEEAEK--LRTESVVGVTGTVVKRPEGNLATGEIELQ 76 (85)
T ss_pred CEEEEEEEehhccCCCEEEEEEEeCCe--eEEEEEECCcChHHHHHHhC--CCCCCEEEEEeEEEECCCCCCCCCCEEEE
Confidence 389999999999999999999999996 599999876433 455677 999999999999999885 45789999
Q ss_pred EeeEEEEec
Q 012426 106 VNKIVLVGK 114 (464)
Q Consensus 106 ~~~i~vls~ 114 (464)
+++++++++
T Consensus 77 ~~~i~il~~ 85 (85)
T cd04100 77 AEELEVLSK 85 (85)
T ss_pred EeEEEEECC
Confidence 999999985
No 48
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.16 E-value=9.9e-11 Score=120.23 Aligned_cols=128 Identities=21% Similarity=0.247 Sum_probs=87.8
Q ss_pred CCccchhhhhH-----HHHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 140 RTNTFGAVARV-----RNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 140 R~~~~~~~~~~-----rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
|.+..++++.+ .+.+.+++|++|...||.||.||.|+.... +..+..-.....++
T Consensus 190 r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~------------------- 250 (417)
T PRK09537 190 RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQ------------------- 250 (417)
T ss_pred cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhh-------------------
Confidence 77788999999 999999999999999999999999985421 11000000000000
Q ss_pred CccccccccCcccccc--cchhHHHHHHh-----hccCceEEEccccccCCCCCccccccchhccceeccCC--HHHHHH
Q 012426 214 LIDWSQDFFEKPAFLT--VSGQLNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDMA 284 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~--~Spql~lqll~-----~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~--~~dlm~ 284 (464)
.-..+...+|+ ..|+|+..+.. ..--|+|+||+|||+|.. +.+|++||+|++++....+ +.+++.
T Consensus 251 -----my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs~~~f~dL~~ 324 (417)
T PRK09537 251 -----IFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGSGCTRENLEN 324 (417)
T ss_pred -----heeeCCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCCchHHHHHHH
Confidence 00023456677 56776653321 112489999999999987 5899999999999998753 677776
Q ss_pred HHHHHHHH
Q 012426 285 CATAYLQY 292 (464)
Q Consensus 285 ~~e~li~~ 292 (464)
+++++++.
T Consensus 325 lleeLL~~ 332 (417)
T PRK09537 325 IIDDFLKH 332 (417)
T ss_pred HHHHHHHH
Confidence 66666654
No 49
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.04 E-value=3.5e-10 Score=106.24 Aligned_cols=116 Identities=21% Similarity=0.304 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCCCCce-eeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 012426 150 VRNALAYATHKFFQENGFIWISSPIITASD-CEGAGEQFC-VTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (464)
Q Consensus 150 ~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~~~F~-vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~y 227 (464)
+|+.+.+.+|++|.+.||.||.||.+++.. .+..+.... +...+ +..+...+
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~ 54 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVG--------------------------AENEEDLY 54 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeee--------------------------cCCCCEEE
Confidence 367899999999999999999999998852 222111111 10111 12345678
Q ss_pred cccchhHHH-HHHhh----ccCceEEEccccccCCCCCc--cccccchhccceeccCC------HHHHHHHHHHHHHH
Q 012426 228 LTVSGQLNA-ETYAT----ALSNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFAD------LKDDMACATAYLQY 292 (464)
Q Consensus 228 L~~Spql~l-qll~~----g~~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~~------~~dlm~~~e~li~~ 292 (464)
|+.|....+ ++++. .--|+||||+|||+|.. +. +|+.||+|+++++.+.+ +.++++.++++++.
T Consensus 55 LR~s~~~~l~~~~~~n~~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 131 (211)
T cd00768 55 LRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRA 131 (211)
T ss_pred ECCCCcHHHHHHHHhhcccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999 55554 44689999999999976 34 78899999999999864 35566666666543
No 50
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.7e-10 Score=113.41 Aligned_cols=144 Identities=16% Similarity=0.189 Sum_probs=104.6
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccC---CC----------CCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAE---SP----------VDAIPKT 210 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~---~~----------~~~~~~~ 210 (464)
.+-++++| ..+|++|-+.||.|+.|.....+.-.....+|+.+.|+++..|++. +| +++++.+
T Consensus 211 lHPLmKvR----~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~v 286 (483)
T KOG2784|consen 211 LHPLMKVR----EEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAV 286 (483)
T ss_pred cchHHHHH----HHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHH
Confidence 45567777 5689999999999999999999888889999998888888777633 12 2333344
Q ss_pred CCCCccccccccCcccc-------------cccchhHHHHHHhhcc--CceEEEccccccCCCCCccccccchhccceec
Q 012426 211 KDGLIDWSQDFFEKPAF-------------LTVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELA 275 (464)
Q Consensus 211 ~~~~~~~~~~~f~~~~y-------------L~~Spql~lqll~~g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a 275 (464)
|+.+ .+..--|+.+|- -++|..+.-+|.-.|| .|+|.|.+|||||..| .+||+||+|+|.-.+
T Consensus 287 H~~G-~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvD-aTHLAEFHQVEGvia 364 (483)
T KOG2784|consen 287 HEQG-GYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVD-ATHLAEFHQVEGVIA 364 (483)
T ss_pred HhcC-CcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccc-hHHHHHHhhhceeee
Confidence 4211 011111222222 2455544445555566 5899999999999997 899999999999998
Q ss_pred cC--CHHHHHHHHHHHHHHH
Q 012426 276 FA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 276 ~~--~~~dlm~~~e~li~~i 293 (464)
.. ++-|+|.++++++..+
T Consensus 365 d~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 365 DKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred cCCCcHHHHHHHHHHHHhcc
Confidence 86 5999999999988654
No 51
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.98 E-value=6.3e-09 Score=81.54 Aligned_cols=74 Identities=26% Similarity=0.465 Sum_probs=60.9
Q ss_pred EEEEEEEeee-ecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEE
Q 012426 32 IVVAGWVRTL-RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 32 V~v~GwV~~i-R~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (464)
|+|+|||.++ |..++++|+.|+|++| .+|+++... ......+. |..|++|.|+|++...+.+ +++|.+++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg--~i~~~~~~~-~~~~~~~~--l~~g~~v~v~G~v~~~~~~--~~~l~~~~i~ 73 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTG--SIQVVFFNE-EYERFREK--LKEGDIVRVRGKVKRYNGG--ELELIVPKIE 73 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETH-HHHHHHHT--S-TTSEEEEEEEEEEETTS--SEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCc--cEEEEEccH-HhhHHhhc--CCCCeEEEEEEEEEEECCc--cEEEEECEEE
Confidence 7899999999 7779999999999997 599999872 11122456 9999999999999998754 3999999998
Q ss_pred EE
Q 012426 111 LV 112 (464)
Q Consensus 111 vl 112 (464)
+|
T Consensus 74 ~l 75 (75)
T PF01336_consen 74 IL 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 76
No 52
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.89 E-value=8.2e-10 Score=115.11 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=96.6
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEe-CceEeecCCCCCCCCceeeecCCCcccccCC---C----------CCCCCCC
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWIS-SPIITASDCEGAGEQFCVTTLIPSSREAAES---P----------VDAIPKT 210 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~-TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~----------~~~~~~~ 210 (464)
..-+..-.+++..+|++|.+.||.|+. .|.+.+.-+ ....+|..++|++++.|++.. | ++++..+
T Consensus 217 ~G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~-NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~ 295 (492)
T PLN02853 217 GGHLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFW-NFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTV 295 (492)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhh-hhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHH
Confidence 345566677889999999999999994 566655444 467788777777776555221 1 2233334
Q ss_pred CCCCccccccccCcccccccchhHHHHH---------Hh----hc--cCceEEEccccccCCCCCccccccchhccceec
Q 012426 211 KDGLIDWSQDFFEKPAFLTVSGQLNAET---------YA----TA--LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELA 275 (464)
Q Consensus 211 ~~~~~~~~~~~f~~~~yL~~Spql~lql---------l~----~g--~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a 275 (464)
|+.+. +...-|+.+|-...|..+-||. |. .+ =-|+|.||+|||+|..| .+|+|||+|+|.-+.
T Consensus 296 He~G~-~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iD-atH~~eFhQ~EG~vv 373 (492)
T PLN02853 296 HESGG-YGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVD-RTHLAEFHQVEGLVC 373 (492)
T ss_pred HhcCC-CCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCC-cccCccceeEEEEEE
Confidence 42110 1112344444444444444431 11 11 13899999999999996 899999999999887
Q ss_pred cC--CHHHHHHHHHHHHHHH
Q 012426 276 FA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 276 ~~--~~~dlm~~~e~li~~i 293 (464)
.. ++.+++.+++++++.+
T Consensus 374 d~~~t~~~L~g~l~~f~~~l 393 (492)
T PLN02853 374 DRGLTLGDLIGVLEDFFSRL 393 (492)
T ss_pred eCCCCHHHHHHHHHHHHHHc
Confidence 65 6899998888887654
No 53
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=98.86 E-value=1.2e-08 Score=104.95 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=79.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc--c
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF--F 222 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--f 222 (464)
..-....+.+.+.+|++|...||.||.||+|+...- -+.|...... +...+. +
T Consensus 236 iG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~---~E~m~~~~g~----------------------eI~n~Iyk~ 290 (453)
T TIGR02367 236 EDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEY---IERMGIDNDT----------------------ELSKQIFRV 290 (453)
T ss_pred cCcccHHHHHHHHHHHHHHHCCCEEEECCeecchHH---HHhhcCccCC----------------------cccccceEe
Confidence 344566789999999999999999999999973210 0111000000 000001 2
Q ss_pred Ccccccc--cchhHHHHHHh-----hccCceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHH
Q 012426 223 EKPAFLT--VSGQLNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQ 291 (464)
Q Consensus 223 ~~~~yL~--~Spql~lqll~-----~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~ 291 (464)
+...+|+ ..|+|+.-+.. ..--|+|+||+|||+|.. +.+|+.||+|++++.+.. ++.|+..++.++++
T Consensus 291 ee~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr 367 (453)
T TIGR02367 291 DKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLD 367 (453)
T ss_pred cCceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3345677 67787753321 113499999999999988 489999999999999876 47777765554443
No 54
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.75 E-value=1.9e-08 Score=105.50 Aligned_cols=146 Identities=14% Similarity=0.097 Sum_probs=94.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCC---C------------CCCCCC
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAES---P------------VDAIPK 209 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~------------~~~~~~ 209 (464)
...+..-.+++..+|++|.+.||.|+.+|...-+.......+|..+.|+++..|++.. | +++++.
T Consensus 225 ~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~ 304 (494)
T PTZ00326 225 GGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKK 304 (494)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHH
Confidence 4455666788899999999999999998855555555677888888888776655221 1 223334
Q ss_pred CCCCCccccccccCcccccccchhHHH---------HHHhh--------c---cCceEEEccccccCCCCCccccccchh
Q 012426 210 TKDGLIDWSQDFFEKPAFLTVSGQLNA---------ETYAT--------A---LSNVYTFGPTFRAENSNTSRHLAEFWM 269 (464)
Q Consensus 210 ~~~~~~~~~~~~f~~~~yL~~Spql~l---------qll~~--------g---~~rVfeI~~~FR~E~~~t~rHl~EFtm 269 (464)
+|+.+. +...-|+.+|-...|..+-| ++|.. + =-|+|+||+|||+|..| .+|+|||+|
T Consensus 305 ~He~G~-~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~D-atH~~eFhQ 382 (494)
T PTZ00326 305 VHEVGG-YGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLD-ATHLAEFHQ 382 (494)
T ss_pred HhccCC-cCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCC-CCcCceeEE
Confidence 442110 11122333333333333322 22221 1 24899999999999996 899999999
Q ss_pred ccceeccCC--HHHHHHHHHHHHHH
Q 012426 270 IEPELAFAD--LKDDMACATAYLQY 292 (464)
Q Consensus 270 lE~e~a~~~--~~dlm~~~e~li~~ 292 (464)
+|..+...+ +.+++.++.++++.
T Consensus 383 ~Eg~vi~~~~s~~~L~~~l~~f~~~ 407 (494)
T PTZ00326 383 VEGFVIDRNLTLGDLIGTIREFFRR 407 (494)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 999998865 67777766665544
No 55
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.71 E-value=3.5e-08 Score=95.84 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc--Ccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--EKP 225 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~~ 225 (464)
...-+.+.+.+|++|...||.||.+|.+.+.... ... .+-+..|++++..+..-. +...- ...
T Consensus 16 ~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~n-FD~------Ln~p~dHpaR~~~Dtfyi--------~~p~~~~~~~ 80 (247)
T PF01409_consen 16 LHPITKFIREIRDIFVGMGFQEVEGPEVESEFYN-FDA------LNIPQDHPARDMQDTFYI--------SNPYSAEEDY 80 (247)
T ss_dssp TSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHH-TGG------GTSTTTSCGGCGTTSEBS--------CSSSBCECSS
T ss_pred CCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHH-HHh------hCcCCCccccccccceee--------eccccccchh
Confidence 3445677899999999999999999999764321 111 222222333321100000 00000 233
Q ss_pred ccccc--chhHHHHHHh---hccCceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHHH
Q 012426 226 AFLTV--SGQLNAETYA---TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVV 294 (464)
Q Consensus 226 ~yL~~--Spql~lqll~---~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i~ 294 (464)
.-|++ ||-+. +.|. ..=-|+|+||+|||+|..| .+|+|||+|+|.-.+.. ++.++...++.++++++
T Consensus 81 ~vLRThts~~~~-~~l~~~~~~p~kif~iG~VyR~D~~D-~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf 154 (247)
T PF01409_consen 81 SVLRTHTSPGQL-RTLNKHRPPPIKIFEIGKVYRRDEID-ATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF 154 (247)
T ss_dssp EEE-SSTHHHHH-HHHTTTSHSSEEEEEEEEEESSSCSB-SSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHH-HHHHHhcCCCeEEEecCceEecCCcc-cccCccceeEeeEEEecccchhHHHHHHHHHHHHHh
Confidence 33443 34222 4441 2347999999999999996 89999999999998876 58999988888887764
No 56
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.70 E-value=1.4e-08 Score=108.17 Aligned_cols=149 Identities=13% Similarity=0.224 Sum_probs=97.4
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCC---CC---------CCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAES---PV---------DAIPKT 210 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~~---------~~~~~~ 210 (464)
....-...+..++..+|+.|...||.||.||.+.+.-+. ...+|+.+.|+++..|+... |- +++..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~n-fd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~ 305 (489)
T PRK04172 227 IYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWN-FDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEV 305 (489)
T ss_pred CCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcc-cccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHH
Confidence 445667789999999999999999999999999887664 67789888887765544211 10 111111
Q ss_pred CC-CC----cccccccc---CcccccccchhHHH-HHHh-hcc--CceEEEccccccCCCCCccccccchhccceeccC-
Q 012426 211 KD-GL----IDWSQDFF---EKPAFLTVSGQLNA-ETYA-TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA- 277 (464)
Q Consensus 211 ~~-~~----~~~~~~~f---~~~~yL~~Spql~l-qll~-~g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~- 277 (464)
|+ |. ..+-.+|- ++..-|+..---.. ++++ .+. -|+|+||+|||+|..+ ..|++||+|+++.+.+.
T Consensus 306 he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d-~~~l~Ef~ql~~~i~G~~ 384 (489)
T PRK04172 306 HEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTID-ATHLPEFYQLEGIVMGED 384 (489)
T ss_pred HhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCC-cccCCchheEEEEEEeCC
Confidence 21 11 11100110 12334443332222 4443 222 4899999999999985 78899999999999986
Q ss_pred -CHHHHHHHHHHHHHHH
Q 012426 278 -DLKDDMACATAYLQYV 293 (464)
Q Consensus 278 -~~~dlm~~~e~li~~i 293 (464)
++.+++.++++++..+
T Consensus 385 ~~f~elkg~l~~ll~~l 401 (489)
T PRK04172 385 VSFRDLLGILKEFYKRL 401 (489)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 5778887777777543
No 57
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=5.8e-08 Score=96.98 Aligned_cols=129 Identities=14% Similarity=0.146 Sum_probs=88.3
Q ss_pred hhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcc
Q 012426 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (464)
Q Consensus 146 ~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (464)
.-...-..++..++++|.+.||.+++.|.+.+.. -....+|..++|+++..|++ =|++..
T Consensus 108 G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~-~NFDaLn~P~dHPARdmqDT-------------------Fy~~~~ 167 (335)
T COG0016 108 GSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDF-YNFDALNIPQDHPARDMQDT-------------------FYLKDD 167 (335)
T ss_pred CCcChHHHHHHHHHHHHHHcCceeccCCcccccc-cchhhhcCCCCCCcccccce-------------------EEEcCC
Confidence 3345556788999999999999999999555543 34566676666665433321 122211
Q ss_pred ---ccc-ccchhHHHHHHhhc---cCceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHHHH
Q 012426 226 ---AFL-TVSGQLNAETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVVR 295 (464)
Q Consensus 226 ---~yL-~~Spql~lqll~~g---~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i~~ 295 (464)
.-| ++....--+.|... =-|+|.+|+|||+|..| .+|+|||+|+|.-.... ++.+|+.+++++++.++.
T Consensus 168 ~~~~lLRTHTs~vq~R~l~~~~~~P~k~~~~grvyR~D~~D-aTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg 245 (335)
T COG0016 168 REKLLLRTHTSPVQARTLAENAKIPIKIFSPGRVYRNDTVD-ATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFG 245 (335)
T ss_pred CCceeecccCcHhhHHHHHhCCCCCceEecccceecCCCCC-cccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcC
Confidence 122 12222323444433 45899999999999996 89999999999876665 588999999998887753
No 58
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.57 E-value=2.5e-07 Score=88.42 Aligned_cols=120 Identities=14% Similarity=0.226 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc--cccccc
Q 012426 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK--PAFLTV 230 (464)
Q Consensus 153 ~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~yL~~ 230 (464)
++.+.+|++|...||.||.|+.+++...+ .+.|......+ .. .. + +.-.... -.+|++
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~--~~~~~~~~~~~-----~~----~~-----~----~~v~l~NP~~~~LR~ 64 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYN--FDALNIPQDHP-----AR----DM-----Q----DTFYINDPARLLLRT 64 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchh--hhhcCCCCCCc-----cc----cc-----C----ceEEECCCceEEEec
Confidence 45678999999999999999999876311 11111100000 00 00 0 0000011 245655
Q ss_pred chhHHH-HHHhh--ccCceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 231 SGQLNA-ETYAT--ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 231 Spql~l-qll~~--g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
|-=--+ +.++. .--|+||||+|||+++. +..|+|||+||++.+++. |+.+++..+|.++..+
T Consensus 65 sLlp~LL~~l~~N~~~~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 65 HTSAVQARALAKLKPPIRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred cCcHHHHHHHHhcCCCeeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 543333 55554 56799999999999876 368899999999999998 8999999999988644
No 59
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.56 E-value=1.2e-07 Score=95.29 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc-cCcc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF-FEKP 225 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~ 225 (464)
....-+.+...+|++|...||.|+.+|.|++.... ...+. -...|++++.- ..| ....
T Consensus 106 ~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~N-FdaLn------~P~dHPaR~~~--------------DTfyI~~~ 164 (339)
T PRK00488 106 SLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYN-FEALN------IPKDHPARDMQ--------------DTFYIDDG 164 (339)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHH-HHHhC------CCCCCcccccC--------------ceEEEcCC
Confidence 34555788899999999999999999999763221 11122 11223333210 012 2222
Q ss_pred ccc--ccchhHHHHHHhhc-c-CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHHHH
Q 012426 226 AFL--TVSGQLNAETYATA-L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVVR 295 (464)
Q Consensus 226 ~yL--~~Spql~lqll~~g-~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i~~ 295 (464)
.-| ++||-+ ++.|... . -|+|++|+|||++..| .+|.|+|+|+|.-++.. ++.++...++.+++.++.
T Consensus 165 ~lLRThTSp~q-ir~L~~~~~Pirif~~G~VyR~D~~D-atH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg 238 (339)
T PRK00488 165 LLLRTHTSPVQ-IRTMEKQKPPIRIIAPGRVYRNDSDD-ATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFG 238 (339)
T ss_pred ceeeccCcHHH-HHHHHhcCCCeEEEEeeeEEEcCCCC-cccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcC
Confidence 333 345543 2434333 2 3899999999999985 89999999999987775 699999999988888764
No 60
>PTZ00213 asparagine synthetase A; Provisional
Probab=98.51 E-value=5.4e-06 Score=81.69 Aligned_cols=247 Identities=16% Similarity=0.155 Sum_probs=139.0
Q ss_pred hhhHHHHHHHHHHHHhhh-----CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-c
Q 012426 147 VARVRNALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-D 220 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~-----~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 220 (464)
.++.....+..+++||.. .+.+.|..|++....++-+.++=-+.. || .++. +
T Consensus 7 ~~~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~Er-----------pV-----------~f~~k~ 64 (348)
T PTZ00213 7 AYIDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEK-----------AV-----------QVHVKG 64 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeee-----------ee-----------EEecCC
Confidence 345556667777777765 599999999999876543322100000 00 0000 1
Q ss_pred ccCcccccccchhHHHHHHhh--cc---CceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHH
Q 012426 221 FFEKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 295 (464)
Q Consensus 221 ~f~~~~yL~~Spql~lqll~~--g~---~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~ 295 (464)
+-+..+-..+|=--|+|+... +| +.+|+=.++.|.++.-+..|.-=--|-|||+....-+.-++++.+.++.+..
T Consensus 65 ~~~~~~evVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~ 144 (348)
T PTZ00213 65 IPNSVFEVVHSLAKWKRLTLGEHKFPVGEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYA 144 (348)
T ss_pred CCCceeEEehhhHHHHHHHHHhcCCCCCceeeeccccccCCcccCccceeEeccccHHHhcCccccCHHHHHHHHHHHHH
Confidence 112333345566667775433 44 5699988888864433589987788999998886444445555555555544
Q ss_pred HHhhc-------Cc-------ccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHH
Q 012426 296 YILDN-------CK-------EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361 (464)
Q Consensus 296 ~~~~~-------~~-------~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~ 361 (464)
.+... +. ++|.|+.. +.|+ ..+|.+|..| -
T Consensus 145 ~ik~te~~~~~~yp~l~~~Lp~~I~Fits-------qeL~----~~YP~lt~ke-------------------------R 188 (348)
T PTZ00213 145 AIRKTEEAICNEYPNLKRILPKEITFLHT-------EHLL----KMYPNLSPKE-------------------------R 188 (348)
T ss_pred HHHHHHHHHHHHchhhhhcCCCceEEecH-------HHHH----HHCCCCCHHH-------------------------H
Confidence 44321 11 11111110 1111 1234444433 2
Q ss_pred HHHhhhhcccCCCeeeee-------------------------------CCCC---CcccccccCCCCCceeeEEEee--
Q 012426 362 ERYLTEEAFGGCPVIVSD-------------------------------YPKE---IKAFYMRQNDDGRTVAAMDMLV-- 405 (464)
Q Consensus 362 e~~l~e~~~~~~p~fI~~-------------------------------yP~~---~~pfy~~~~~d~~~~~~fdl~~-- 405 (464)
|..++..+ ..|||+. ||.. +.|.... .-.+=|+++
T Consensus 189 E~~i~ke~---gaVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~~~~~~~~~~~~~~~~------~gLNGDilvw~ 259 (348)
T PTZ00213 189 EREIVKKY---GAVFLIGIGCKLSSGDTHDLRAPDYDDWSSPVSASKIGFPTADPTMNSLMSL------QGLNGDILVYN 259 (348)
T ss_pred HHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCCcccccccccccccccccccccccccccc------cCccceEEEec
Confidence 32333222 2333332 1111 1111111 112334433
Q ss_pred ----CCccccccCccccccHHHHHHHHHHcC-CCccchHHHHHHhhhh-------h--h---HhhhhcCCCCCCC
Q 012426 406 ----PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-------S--G---LVFILIKVTNFLN 463 (464)
Q Consensus 406 ----~GigEi~~G~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~~~~~G-------~--g---L~mll~~~~~I~~ 463 (464)
.. .||.+|+.|. |++.+.++++..| .+...+.||+++ ..| . | |+|+|+|..+|.+
T Consensus 260 ~~l~~a-~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~l-l~g~LP~TiGGGIGqsRL~M~LL~k~HIgE 331 (348)
T PTZ00213 260 PVLDDV-LELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQML-LNGELPQTIGGGIGQSRLCMFMLRKKHIGE 331 (348)
T ss_pred hhcCce-eecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHHH-HcCCCCCcccccccHHHHHHHHhCcchhcc
Confidence 34 5999999999 9999999999999 688899999994 443 2 3 9999999999986
No 61
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.40 E-value=6.7e-07 Score=82.20 Aligned_cols=116 Identities=23% Similarity=0.280 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhh-hCCcEEEeCceEeecCC-CC-------CCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 150 VRNALAYATHKFFQ-ENGFIWISSPIITASDC-EG-------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 150 ~rs~i~~~~r~ff~-~~gF~EV~TP~L~~~~~-eg-------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
++++|.+.+++.+. +.||.||.||.|.+... +. ...+|.++..+
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~--------------------------- 53 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRG--------------------------- 53 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETT---------------------------
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecc---------------------------
Confidence 47899999999999 99999999999998542 21 12344432110
Q ss_pred ccCcccccccchhHHH-HHHhh-c------c-CceEEEccccccCCCC--CccccccchhccceeccCCHHHHHHHHHHH
Q 012426 221 FFEKPAFLTVSGQLNA-ETYAT-A------L-SNVYTFGPTFRAENSN--TSRHLAEFWMIEPELAFADLKDDMACATAY 289 (464)
Q Consensus 221 ~f~~~~yL~~Spql~l-qll~~-g------~-~rVfeI~~~FR~E~~~--t~rHl~EFtmlE~e~a~~~~~dlm~~~e~l 289 (464)
+...+|+.+.+... .++.. . + =++|++|+|||+|... +-..+-||+|.|++....+ ++..+..+++
T Consensus 54 --~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~ 130 (173)
T PF00587_consen 54 --DEEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEEL 130 (173)
T ss_dssp --TEEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHH
T ss_pred --cccEEeccccccceeeeecceeeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHH
Confidence 13457777766655 44332 1 2 2899999999999432 3567789999999997777 7877777777
Q ss_pred HHHHHH
Q 012426 290 LQYVVR 295 (464)
Q Consensus 290 i~~i~~ 295 (464)
+..+..
T Consensus 131 ~~~~~~ 136 (173)
T PF00587_consen 131 LELYKE 136 (173)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 755433
No 62
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=98.39 E-value=1.2e-05 Score=78.30 Aligned_cols=257 Identities=14% Similarity=0.128 Sum_probs=147.0
Q ss_pred HHHHHHHhhh-----CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-cccCccccc
Q 012426 155 AYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFFEKPAFL 228 (464)
Q Consensus 155 ~~~~r~ff~~-----~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~~yL 228 (464)
+..+++||.. .+.+.|..|+++...++-+.++=-+.. || .++. ++-+..+-.
T Consensus 4 I~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~-----------pV-----------~f~~k~~~~~~~ei 61 (309)
T cd00645 4 IKFIKDFFQDNLAKELNLIRVSAPLFVEKGSGLNDNLNGVEK-----------PV-----------SFKVKALPDATLEV 61 (309)
T ss_pred HHHHHHHHHHHHHHHhCeEEecCCeEEecCCCCccCCCCccc-----------ce-----------EeecCCCCCceeEE
Confidence 4555566644 699999999999876552221100000 00 0000 111233334
Q ss_pred ccchhHHHHHHh--hcc---CceEEEcccccc-CCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc
Q 012426 229 TVSGQLNAETYA--TAL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302 (464)
Q Consensus 229 ~~Spql~lqll~--~g~---~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~ 302 (464)
-+|=--|+|+.. -|| +.+|+=..+.|. |+. +..|.-=--|-|||.....-+.-++++.+.++.+...+...-
T Consensus 62 VhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te- 139 (309)
T cd00645 62 VHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETE- 139 (309)
T ss_pred eeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHHH-
Confidence 556666777543 245 568998888886 565 589987788899998876555556666666666555543220
Q ss_pred ccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCC
Q 012426 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 382 (464)
Q Consensus 303 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~ 382 (464)
..+ ...+ ..+...+..++.=||-+|..+++ | . .=.++-|..++..+ ..|||+.-=.
T Consensus 140 ~~~--~~~y------~~~~~~Lp~~i~FitsqeL~~~Y---------P-~---l~~keRE~~i~ke~---gaVFi~~IG~ 195 (309)
T cd00645 140 LEV--NEKY------PQLEPILPEEITFITSQELEDRY---------P-D---LTPKEREDAICKEH---GAVFIIGIGG 195 (309)
T ss_pred HHH--HHHc------hhhhhcCCCceEEecHHHHHHHC---------C-C---CCHHHHHHHHHHHh---CcEEEEeccC
Confidence 000 0000 01112222222234555544432 1 1 11335566666654 5788876332
Q ss_pred CCcccccccC----CCCCceeeEEEee------CCccccccCccccccHHHHHHHHHHcC-CCccchHHHHHHhhhhh--
Q 012426 383 EIKAFYMRQN----DDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYGS-- 449 (464)
Q Consensus 383 ~~~pfy~~~~----~d~~~~~~fdl~~------~GigEi~~G~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~~~~~G~-- 449 (464)
.++-= ++|+ +-.....+=|+++ ..+ ||.+|+.|.+. +.+.++++..| .+...+.| ++++..|.
T Consensus 196 ~L~~g-~~Hd~RapDYDDW~LNGDil~w~~~l~~a~-ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP 271 (309)
T cd00645 196 KLSDG-KKHDGRAPDYDDWTLNGDILVWNPVLQRAF-ELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELP 271 (309)
T ss_pred cCCCC-CcCCCCCCCCcCccccceEEEEchhcCcee-eecCcceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCC
Confidence 22111 1121 1112334444444 477 99999999999 99999999998 67778888 88877652
Q ss_pred -------h---HhhhhcCCCCCCC
Q 012426 450 -------G---LVFILIKVTNFLN 463 (464)
Q Consensus 450 -------g---L~mll~~~~~I~~ 463 (464)
| |+|+|+|..+|.+
T Consensus 272 ~TiGgGIGqsRL~M~LL~k~HIgE 295 (309)
T cd00645 272 QTIGGGIGQSRLCMFLLQKAHIGE 295 (309)
T ss_pred ccccccccHHHHHHHHhccchhcc
Confidence 3 9999999999986
No 63
>PLN02788 phenylalanine-tRNA synthetase
Probab=98.39 E-value=9.3e-07 Score=90.91 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhhC---CcEEEe--CceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc-Cc
Q 012426 151 RNALAYATHKFFQEN---GFIWIS--SPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-EK 224 (464)
Q Consensus 151 rs~i~~~~r~ff~~~---gF~EV~--TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~ 224 (464)
-+.+...|+++|.+. ||.+++ .|+. +. ......++...+|++++.+ ..|| +.
T Consensus 70 l~~~~~~i~~~f~~~~~~gf~~~~~~~~iv-~~-~~NFD~L~~P~dHPaR~~~--------------------DTfy~~~ 127 (402)
T PLN02788 70 LGILKNAIYDYFDENYSNKFKKFDDLSPIV-ST-KQNFDDVLVPPDHVSRSYN--------------------DTYYVDA 127 (402)
T ss_pred HHHHHHHHHHHHhhcccCCcEEecCCCCcc-ch-hhhhhhhCCCCCCCccCcc--------------------ceEEecC
Confidence 355667888899887 999999 4544 33 3444555534444432211 1233 33
Q ss_pred ccccc--cch-hHHHHHHhhccCceEEEccccccCCCCCccccccchhccceecc--------------CCHHHHHHHHH
Q 012426 225 PAFLT--VSG-QLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--------------ADLKDDMACAT 287 (464)
Q Consensus 225 ~~yL~--~Sp-ql~lqll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--------------~~~~dlm~~~e 287 (464)
..-|+ +|+ |. ++|..+-.|++.+|+|||++..| .+|.|+|+|+|.-+.+ .+..++...+|
T Consensus 128 ~~lLRTHTSa~q~--~~l~~~~~~~~~~g~VyRrD~iD-~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le 204 (402)
T PLN02788 128 QTVLRCHTSAHQA--ELLRAGHTHFLVTGDVYRRDSID-ATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLE 204 (402)
T ss_pred CccccCCCcHHHH--HHHHhCCCcEEEEeeEeecCCCC-cccCccceeEEEEEEecccccccccccccccCHHHHHHHHH
Confidence 33342 233 22 55556677999999999999996 8999999999998886 34678888888
Q ss_pred HHHHHHHH
Q 012426 288 AYLQYVVR 295 (464)
Q Consensus 288 ~li~~i~~ 295 (464)
.+++.++.
T Consensus 205 ~l~~~lfg 212 (402)
T PLN02788 205 GLARHLFG 212 (402)
T ss_pred HHHHHhcC
Confidence 88887754
No 64
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=98.38 E-value=1.3e-05 Score=78.77 Aligned_cols=262 Identities=15% Similarity=0.119 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHHHhhh-----CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-ccc
Q 012426 149 RVRNALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFF 222 (464)
Q Consensus 149 ~~rs~i~~~~r~ff~~-----~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f 222 (464)
+.....++.++++|.. .+.+.|..|+++...++-+.++=-+.. || .++. +.-
T Consensus 9 ~~tq~aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~-----------pV-----------~F~~k~~~ 66 (327)
T PRK05425 9 IETQQAISFVKDFFERQLAKKLNLIRVSAPLFVRVGSGLNDNLNGVEK-----------PV-----------SFKVKDLP 66 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCeeEecCCeEEcCCCCcccCCCCeec-----------ce-----------EeeccCCC
Confidence 3344555666666654 699999999999876553332200000 00 0000 111
Q ss_pred CcccccccchhHHHHHHhh--cc---CceEEEcccccc-CCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHH
Q 012426 223 EKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 296 (464)
Q Consensus 223 ~~~~yL~~Spql~lqll~~--g~---~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~ 296 (464)
+.++-..+|=--|+|+... +| +.+|+=..+.|. |+. +..|.-=--|-|||.....-+.-++++.+.++.+...
T Consensus 67 ~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-d~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ 145 (327)
T PRK05425 67 DATFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDEDL-DNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKA 145 (327)
T ss_pred CCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CcccceEeccccHHHhCCccccCHHHHHHHHHHHHHH
Confidence 2233345566666776443 55 468998888886 555 5899877888999988764555556666666665555
Q ss_pred HhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCee
Q 012426 297 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVI 376 (464)
Q Consensus 297 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~f 376 (464)
+...- ..+ ...+ + .+ +.+..++.=||-+|..+++ | . .=.++-|..++..+ ..||
T Consensus 146 ik~te-~~~--~~~y-~-----~~-~~Lp~~i~FitsqeL~~~Y---------P-~---l~~keRE~~i~ke~---gaVF 199 (327)
T PRK05425 146 IKATE-KAV--SKKY-P-----LL-PFLPEEITFITSQELEDRY---------P-D---LTPKEREDAIAKEY---GAVF 199 (327)
T ss_pred HHHHH-HHH--HHhC-c-----cc-ccCCCceEEecHHHHHHHC---------C-C---CCHHHHHHHHHHHh---CcEE
Confidence 43220 000 0000 0 00 1122222234445544432 1 1 11335566666654 5788
Q ss_pred eeeCCCCCcccccccC----CCCCceeeEEEee------CCccccccCccccccHHHHHHHHHHcC-CCccchHHHHHHh
Q 012426 377 VSDYPKEIKAFYMRQN----DDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLR 445 (464)
Q Consensus 377 I~~yP~~~~pfy~~~~----~d~~~~~~fdl~~------~GigEi~~G~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~~~ 445 (464)
|+.-=..++-= ++|+ +-.....+=|+++ ..+ ||.+|+.|.+ ++.+.++++..| .+...+.||+++
T Consensus 200 i~~IG~~L~~g-~~Hd~RapDYDDW~LNGDilvw~~~l~~a~-ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l- 275 (327)
T PRK05425 200 LIGIGGKLSDG-KPHDGRAPDYDDWGLNGDILVWNPVLDDAF-ELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL- 275 (327)
T ss_pred EEeccCcCCCC-CcCCCCCCCCcCcccCceEEEEccccCcee-eecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-
Confidence 87633222110 1121 1112233344443 377 9999999999 999999999999 688899999999
Q ss_pred hhhh---------h---HhhhhcCCCCCCC
Q 012426 446 HYGS---------G---LVFILIKVTNFLN 463 (464)
Q Consensus 446 ~~G~---------g---L~mll~~~~~I~~ 463 (464)
..|. | |+|+|+|..+|.+
T Consensus 276 l~g~LP~TiGgGIGqsRL~M~LL~k~HIgE 305 (327)
T PRK05425 276 LNGELPLTIGGGIGQSRLCMLLLQKAHIGE 305 (327)
T ss_pred HhCCCCCcccccccHHHHHHHHhccchhcc
Confidence 5442 3 9999999999976
No 65
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.32 E-value=2.7e-06 Score=83.49 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
.+.|..+.+.+++.|.++||.||.||.|...+. +...++|.+.+.+
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~--------------------------- 54 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKG--------------------------- 54 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCC---------------------------
Confidence 367889999999999999999999999998542 1223455543211
Q ss_pred ccCcccccccchhHHH-HHHhh------ccCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 221 FFEKPAFLTVSGQLNA-ETYAT------ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 221 ~f~~~~yL~~Spql~l-qll~~------g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+.|+.-..... ++++. .--|+|++++|||+|... ..|..||+|+++|+-..+
T Consensus 55 --g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k~~y~g~vfR~e~~~-~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 55 --GRDLALRPDLTAPVARAVAENLLSLPLPLKLYYIGPVFRYERPQ-KGRYREFYQVGVEIIGSD 116 (261)
T ss_pred --CCEEEeCCCCcHHHHHHHHhcCccCCCCeEEEEEcCEEecCCCC-CCCccceEEeceeeeCCC
Confidence 23333432222222 33332 234899999999999884 678899999999987663
No 66
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.29 E-value=4e-06 Score=83.73 Aligned_cols=126 Identities=12% Similarity=0.125 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 226 (464)
.......+...+|++|...||.|+.||.+++.... ....+....|+++..++ .-+.....
T Consensus 70 ~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~-fd~l~~~~~hpar~~~d-------------------~~~l~d~~ 129 (294)
T TIGR00468 70 SLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWN-FDALNIPQDHPARDMQD-------------------TFYIKDRL 129 (294)
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHH-HHHhCCCCCCcchhhcc-------------------ceeecCCc
Confidence 34445677889999999999999999999875211 01111111122110000 00111233
Q ss_pred ccccchhHHH-HHHhhcc---CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 227 FLTVSGQLNA-ETYATAL---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 227 yL~~Spql~l-qll~~g~---~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
.|++|-=--+ +.+.... -|+|+||+|||++..+ .+|+|||+|+++-.... |+.|+...++.++..+
T Consensus 130 vLRtsl~p~ll~~l~~N~~~pirlFEiGrVfr~d~~d-~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l 201 (294)
T TIGR00468 130 LLRTHTTAVQLRTMEENEKPPIRIFSPGRVFRNDTVD-ATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKM 201 (294)
T ss_pred ceecccHHHHHHHHHhcCCCCceEEEecceEEcCCCC-CccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4554443333 5555444 4999999999998874 79999999999987653 7888888888777543
No 67
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.12 E-value=1.1e-05 Score=77.53 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC--CCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 149 RVRNALAYATHKFFQENGFIWISSPIITASD-CE--GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 149 ~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e--g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
+++.+|.+.+++.|.+.||.||.||.|.... .+ +.. ++|.+++.+. .
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~ 57 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGR-------------------------E 57 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcc-------------------------c
Confidence 5788999999999999999999999999854 22 111 2333211000 0
Q ss_pred ccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCC--ccccccchhccceeccCC
Q 012426 221 FFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 221 ~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~~ 278 (464)
--+..++|+....... ++++. .+ -|+|++|+|||+|.... ..-.-||+|.|++....+
T Consensus 58 ~~~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 58 LRDTDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred ccCCeEEEecCCCHHHHHHHhccCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 0023445554444333 33322 12 38999999999998741 223469999999986654
No 68
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.11 E-value=6.3e-06 Score=80.98 Aligned_cols=125 Identities=18% Similarity=0.104 Sum_probs=84.5
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC----CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~----eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
...-.+++.+|.+.+++.+.+.||.||.||.|...+. .| ..++|.++....
T Consensus 28 lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~-------------------- 87 (261)
T cd00778 28 RPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGL-------------------- 87 (261)
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCC--------------------
Confidence 3445789999999999999999999999999988532 11 234565532110
Q ss_pred ccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCC--ccccccchhccceeccCCHHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~~~~dlm~ 284 (464)
.-.+.+++|....+-.+ .+++. .+ =|+|++++|||+|..++ --=.-||+|.|.+..+.+.++..+
T Consensus 88 -----~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~ 162 (261)
T cd00778 88 -----EELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEE 162 (261)
T ss_pred -----cccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHH
Confidence 00012455665554444 22221 12 37899999999998742 112349999999999999988888
Q ss_pred HHHHHHHHH
Q 012426 285 CATAYLQYV 293 (464)
Q Consensus 285 ~~e~li~~i 293 (464)
..++++...
T Consensus 163 ~~~~~~~~~ 171 (261)
T cd00778 163 EVLQILDLY 171 (261)
T ss_pred HHHHHHHHH
Confidence 888877543
No 69
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.04 E-value=1.8e-05 Score=82.42 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=69.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--C---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+++..+...+++.|.++||.||.||+|...+. . . ..++|.+.+.+
T Consensus 10 ~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~-------------------- 69 (397)
T TIGR00442 10 LPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKG-------------------- 69 (397)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCC--------------------
Confidence 4456788999999999999999999999999977431 1 1 12344443211
Q ss_pred CccccccccCcccccccchhHHH-HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-|+.=.-... ++++.. --|+|++|+|||.|... ..|.-||+|+++|....+
T Consensus 70 ---------g~~l~LRpD~T~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 70 ---------GRSLTLRPEGTAPVARAVIENKLLLPKPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSD 131 (397)
T ss_pred ---------CCEEeecCCCcHHHHHHHHhcccccCCCeEEEEEcCeecCCCCC-CCcccceEEcCeeeeCCC
Confidence 23323322111111 333321 24899999999999885 456689999999987764
No 70
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=98.00 E-value=2.5e-05 Score=76.52 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=77.2
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
..-.+++.+|.+.+++.|.+.||.||.||+|..... . | ..++|.+++.
T Consensus 28 P~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~------------------------ 83 (255)
T cd00779 28 PLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDR------------------------ 83 (255)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecC------------------------
Confidence 445788999999999999999999999999987321 1 1 2234544221
Q ss_pred ccccccCcccccccchhHHH-----HHHhh--ccC-ceEEEccccccCCCCCcc--ccccchhccceeccCCHHHHHHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNA-----ETYAT--ALS-NVYTFGPTFRAENSNTSR--HLAEFWMIEPELAFADLKDDMACA 286 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l-----qll~~--g~~-rVfeI~~~FR~E~~~t~r--Hl~EFtmlE~e~a~~~~~dlm~~~ 286 (464)
-+++++|+.-.+-.+ +.+.. .+. |+|++++|||+|.....= =.-||+|.|.+..+.+-.+.....
T Consensus 84 -----~~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~ 158 (255)
T cd00779 84 -----HGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETY 158 (255)
T ss_pred -----CCCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHH
Confidence 123456655433322 21211 233 899999999999432210 235999999999887766666666
Q ss_pred HHHHH
Q 012426 287 TAYLQ 291 (464)
Q Consensus 287 e~li~ 291 (464)
++++.
T Consensus 159 ~~i~~ 163 (255)
T cd00779 159 EKMYQ 163 (255)
T ss_pred HHHHH
Confidence 66554
No 71
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.00 E-value=4.7e-05 Score=74.95 Aligned_cols=122 Identities=20% Similarity=0.144 Sum_probs=81.0
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-CCC--------CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA--------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~--------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
..-.+++.+|.+.+++.+.+.||.||.||.|..... .+. .+.|.++..+.
T Consensus 29 P~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~--------------------- 87 (264)
T cd00772 29 PLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGD--------------------- 87 (264)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCC---------------------
Confidence 345688999999999999999999999999988432 111 23444432110
Q ss_pred cccccccCcccccccchhHHH-HHHhh------ccC-ceEEEccccccCCCCCcc---ccccchhccceeccCCHHHHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~------g~~-rVfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~a~~~~~dlm~ 284 (464)
+=.+.+++|+...+-.+ .+... .+. |+|++++|||+|..+ .+ =.-||+|.|.+..+.+.++..+
T Consensus 88 ----~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~-~~Gl~R~reF~~~e~~~~~~~~e~a~~ 162 (264)
T cd00772 88 ----EELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRP-RFGFLRAREFIMKDGHSAHADAEEADE 162 (264)
T ss_pred ----CccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCC-CCCcceeeEEEEeeeEEecCCHHHHHH
Confidence 00013456655555433 33222 233 899999999999653 22 2359999999987788888888
Q ss_pred HHHHHHHH
Q 012426 285 CATAYLQY 292 (464)
Q Consensus 285 ~~e~li~~ 292 (464)
.++.++..
T Consensus 163 e~~~~~~~ 170 (264)
T cd00772 163 EFLNMLSA 170 (264)
T ss_pred HHHHHHHH
Confidence 77777743
No 72
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=97.96 E-value=0.00037 Score=68.61 Aligned_cols=265 Identities=14% Similarity=0.101 Sum_probs=148.3
Q ss_pred hhHHHHHHHHHHHHhhh-----CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-cc
Q 012426 148 ARVRNALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DF 221 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~-----~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 221 (464)
++.....+..+++||.. .+.++|..|+++...++-+.++=-+.. || .++. +.
T Consensus 5 ~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~Er-----------pV-----------~f~~k~~ 62 (330)
T TIGR00669 5 FILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREK-----------AV-----------QVKVKAI 62 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeec-----------ce-----------EeecCCC
Confidence 45555667777787765 599999999999876543322100100 00 0000 01
Q ss_pred cCcccccccchhHHHHHHhh--cc---CceEEEcccccc-CCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHH
Q 012426 222 FEKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 295 (464)
Q Consensus 222 f~~~~yL~~Spql~lqll~~--g~---~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~ 295 (464)
-+..+-.-+|=--|+|+... || +.+|+=..+-|. |+.-+..|.-=--|-|||.....-+.-++++.+.++.+.+
T Consensus 63 ~~~~~evVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~ 142 (330)
T TIGR00669 63 PDAQFEVVHSLAKWKRHTLARHDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYA 142 (330)
T ss_pred CCceeEEehhhHHHHHHHHHhcCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHH
Confidence 12333345566667776443 55 469998888886 5622489987778889998876455555556655555555
Q ss_pred HHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCe
Q 012426 296 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPV 375 (464)
Q Consensus 296 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~ 375 (464)
.+...- ..+ ...+ .+...+..++.-||-+|..+++ | . .=.++-|..++..+ ..|
T Consensus 143 ~ik~te-~~~--~~~y-------~l~~~Lp~~I~FitsqeL~~~Y---------P-~---lt~keRE~~i~ke~---gaV 196 (330)
T TIGR00669 143 AIRATE-AAV--SERF-------GLAPFLPDQIHFVHSEELVSRY---------P-D---LDSKGRERAICKEL---GAV 196 (330)
T ss_pred HHHHHH-HHH--HHhc-------CccccCCCceEEecHHHHHHHC---------C-C---CCHHHHHHHHHHHh---CcE
Confidence 543220 000 0000 0111121222223445543332 1 1 11335566666654 477
Q ss_pred eeeeCCCCC--------cc-ccc---ccCCCCCceeeEEEee------CCccccccCccccccHHHHHHHHHHcC-CCcc
Q 012426 376 IVSDYPKEI--------KA-FYM---RQNDDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK-LNRD 436 (464)
Q Consensus 376 fI~~yP~~~--------~p-fy~---~~~~d~~~~~~fdl~~------~GigEi~~G~~r~~d~~~l~~r~~~~g-~~~~ 436 (464)
||+.-=..+ ++ =|. ...+++-.-.+=|+++ ..+ ||.+-+.|- |.+.+.++++..| .+..
T Consensus 197 Fi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~-ElSSMGIRV-d~~~L~~Qlk~~g~~dr~ 274 (330)
T TIGR00669 197 FLIGIGGKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALRHQLALTGDEDRL 274 (330)
T ss_pred EEEeccCcCCCCCcCCCCCCCcccccccccccccCcCceEEEEchhcCcee-eeecceeEE-CHHHHHHHHHHcCCCccc
Confidence 777532222 21 110 0011111124445554 366 888877776 5677889999988 7888
Q ss_pred chHHHHHHhhhh-------h--h---HhhhhcCCCCCCC
Q 012426 437 SYWWYLDLRHYG-------S--G---LVFILIKVTNFLN 463 (464)
Q Consensus 437 ~~~~yl~~~~~G-------~--g---L~mll~~~~~I~~ 463 (464)
.+.||+++ ..| . | |+|+|+|..+|.+
T Consensus 275 ~l~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~HIgE 312 (330)
T TIGR00669 275 ELEWHQDL-LNGELPQTIGGGIGQSRLAMLLLQLKHIGE 312 (330)
T ss_pred cCHHHHHH-HcCCCCccccccccHHHHHHHHhccccccc
Confidence 99999999 544 2 3 9999999999986
No 73
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.92 E-value=3.9e-05 Score=80.21 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=69.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------CC----CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+.+..+...+++.|.++||.||.||++...+- +. ..++|.+.+.
T Consensus 14 ~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~--------------------- 72 (412)
T PRK00037 14 LPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDK--------------------- 72 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcC---------------------
Confidence 4455788899999999999999999999999976431 11 1334443221
Q ss_pred CccccccccCcccccccc--hhHHHHHHhh---ccCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVS--GQLNAETYAT---ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~S--pql~lqll~~---g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
-++.+-|+.= |++. ++++. .--|+|++|+|||+|... ..|.-||+|+++|.-..+
T Consensus 73 --------~g~~l~LRpd~T~~~a-r~~~~~~~~p~r~~~~g~vfR~e~~~-~gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 73 --------GGRSLTLRPEGTAPVV-RAVIEHKLQPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSD 132 (412)
T ss_pred --------CCCEEEecCCCcHHHH-HHHHhCCCCCeEEEEEcCccccCCCC-CCcccceEEcCeeeeCCC
Confidence 1222233211 2222 33332 235999999999999885 567789999999986654
No 74
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.79 E-value=7.8e-05 Score=80.95 Aligned_cols=126 Identities=15% Similarity=0.123 Sum_probs=82.1
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C-------CCCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E-------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e-------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
.+..-.+++.+|.+.+|+.|.+.||.||.||.|.+..- . -+.++|.+++.
T Consensus 42 ~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr---------------------- 99 (568)
T TIGR00409 42 WLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDR---------------------- 99 (568)
T ss_pred ECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecC----------------------
Confidence 44566889999999999999999999999999998431 1 12356665321
Q ss_pred ccccccccCcccccccchh-----HHHHHHhh--ccC-ceEEEccccccCCC-CCc-cccccchhccceeccCCHHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQ-----LNAETYAT--ALS-NVYTFGPTFRAENS-NTS-RHLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spq-----l~lqll~~--g~~-rVfeI~~~FR~E~~-~t~-rHl~EFtmlE~e~a~~~~~dlm~ 284 (464)
-+..++|+...| ++.+.+.+ .+. |+|+|+++||+|.- ... -=.-||+|.|.|....+..+...
T Consensus 100 -------~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~ 172 (568)
T TIGR00409 100 -------KGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDA 172 (568)
T ss_pred -------CCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHH
Confidence 134455654322 22222222 233 89999999999942 111 02349999999998877666655
Q ss_pred HHHHHH---HHHHHHH
Q 012426 285 CATAYL---QYVVRYI 297 (464)
Q Consensus 285 ~~e~li---~~i~~~~ 297 (464)
..+.++ ..+++.+
T Consensus 173 e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 173 TYQKMYQAYSNIFSRL 188 (568)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 555444 4555544
No 75
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.77 E-value=0.0001 Score=73.84 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=71.5
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---CCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
..-.+++..|.+.+++.+.+.||.||.||.|...+. .|. .++|.++.
T Consensus 27 p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~------------------------- 81 (298)
T cd00771 27 PKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEE------------------------- 81 (298)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEecc-------------------------
Confidence 345788899999999999999999999999987531 121 23443311
Q ss_pred ccccccCcccccccchhHHH-HHHhh------ccC-ceEEEccccccCCCCCcc---ccccchhccceeccCCHHHHHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l-qll~~------g~~-rVfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
-+..++|+...+-.. .+.+. .+. |+|++|+|||+|.+...+ =.-||+|.|++.... -++..+.
T Consensus 82 -----~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~-~e~~~~e 155 (298)
T cd00771 82 -----EDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCT-PDQIKEE 155 (298)
T ss_pred -----CCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeC-CcchHHH
Confidence 013444543333222 33322 232 899999999999773111 124999999998533 2333334
Q ss_pred HHHHHH
Q 012426 286 ATAYLQ 291 (464)
Q Consensus 286 ~e~li~ 291 (464)
+++++.
T Consensus 156 ~~e~l~ 161 (298)
T cd00771 156 IKGVLD 161 (298)
T ss_pred HHHHHH
Confidence 444443
No 76
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.74 E-value=9.2e-05 Score=78.78 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=84.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-C---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD-C---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
..-.+++..|.+.+++-+.+.||.||.||.|.+.. . ++ ..++|.+++...
T Consensus 35 P~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~--------------------- 93 (472)
T TIGR00408 35 PYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGL--------------------- 93 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCC---------------------
Confidence 34578899999999999999999999999998743 1 12 345676654210
Q ss_pred cccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCc--cccccchhccceeccCCHHHHHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
+=.+.+++|+...+-.. .+... .+ -|+|++++|||+|...+. -=.-||+|.|.+..|.+.++..+.
T Consensus 94 ----~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e 169 (472)
T TIGR00408 94 ----SKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQ 169 (472)
T ss_pred ----CccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHH
Confidence 00134556665555444 33222 12 289999999999987421 124599999999989988888877
Q ss_pred HHHHHHH
Q 012426 286 ATAYLQY 292 (464)
Q Consensus 286 ~e~li~~ 292 (464)
++.++..
T Consensus 170 ~~~~l~~ 176 (472)
T TIGR00408 170 VLRALDI 176 (472)
T ss_pred HHHHHHH
Confidence 7777643
No 77
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.74 E-value=0.00017 Score=78.65 Aligned_cols=126 Identities=14% Similarity=0.088 Sum_probs=80.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCC-------CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEG-------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg-------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-++++.+|.+.+|+.|.+.||.||.||.|.+.. ... +.++|.+++.
T Consensus 42 ~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~---------------------- 99 (565)
T PRK09194 42 YLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDR---------------------- 99 (565)
T ss_pred ECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecC----------------------
Confidence 3455688999999999999999999999999999743 111 2346655321
Q ss_pred ccccccccCcccccccchhHHH-HHHhh---c---c-CceEEEccccccCCCCCcc--ccccchhccceeccCCHHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYAT---A---L-SNVYTFGPTFRAENSNTSR--HLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~---g---~-~rVfeI~~~FR~E~~~t~r--Hl~EFtmlE~e~a~~~~~dlm~ 284 (464)
-+++++|+.-.+-.. .++.. . + -|.|+|++|||.|.....= =.-||+|.|.|....+-.+...
T Consensus 100 -------~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~ 172 (565)
T PRK09194 100 -------HGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDE 172 (565)
T ss_pred -------CCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHH
Confidence 134555654333222 33221 1 2 3899999999999431110 2349999999998776555444
Q ss_pred HHHHHH---HHHHHHH
Q 012426 285 CATAYL---QYVVRYI 297 (464)
Q Consensus 285 ~~e~li---~~i~~~~ 297 (464)
..++++ ..+++.+
T Consensus 173 ~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 173 TYDAMYQAYSRIFDRL 188 (565)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 444444 4444443
No 78
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.73 E-value=5.4e-05 Score=74.07 Aligned_cols=101 Identities=24% Similarity=0.196 Sum_probs=66.6
Q ss_pred hhhhhHHHHHHHHHHHHhhhCC--cEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 145 GAVARVRNALAYATHKFFQENG--FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~g--F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
..-.+++..|.+.+|+.|...| |.||.||+|.+. .+|.+. ..+ . +--
T Consensus 29 P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~-~g~---------------~---------d~~ 77 (254)
T cd00774 29 PLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTS-IGP---------------V---------ESG 77 (254)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheee-ecc---------------c---------CCC
Confidence 3457899999999999999885 999999999887 677652 110 0 001
Q ss_pred Cccccccc--ch---hHHHHHHhhc---c-CceEEEccccccCCCCC--ccccccchhccceecc
Q 012426 223 EKPAFLTV--SG---QLNAETYATA---L-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAF 276 (464)
Q Consensus 223 ~~~~yL~~--Sp---ql~lqll~~g---~-~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~ 276 (464)
+..+||+. .| -.+.+.+... + =|+||||+|||+|.+.. --=.-||||.|+|.-.
T Consensus 78 ~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~ 142 (254)
T cd00774 78 GNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFV 142 (254)
T ss_pred CcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeE
Confidence 23344543 21 1223433322 2 38999999999998632 0234599999999843
No 79
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.69 E-value=0.00012 Score=76.60 Aligned_cols=117 Identities=16% Similarity=0.267 Sum_probs=80.6
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.....++..+|++.+++.+.+.||.||.||.|.... .++.+ ++|.++
T Consensus 169 ~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~------------------------- 223 (418)
T TIGR00414 169 KNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE------------------------- 223 (418)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec-------------------------
Confidence 345688999999999999999999999999999854 23322 222221
Q ss_pred cccccccCcccccccchhHHHH-HHhh------cc-CceEEEccccccCCCC------CccccccchhccceeccCCHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNAE-TYAT------AL-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~lq-ll~~------g~-~rVfeI~~~FR~E~~~------t~rHl~EFtmlE~e~a~~~~~d 281 (464)
+...||....+..+- +... .+ -|+|++++|||+|.+. +--=.-||+|.|. ..|.+-++
T Consensus 224 -------~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~ 295 (418)
T TIGR00414 224 -------DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEE 295 (418)
T ss_pred -------CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHH
Confidence 234567776666653 3222 12 3799999999999741 1112349999999 45777777
Q ss_pred HHHHHHHHHHHH
Q 012426 282 DMACATAYLQYV 293 (464)
Q Consensus 282 lm~~~e~li~~i 293 (464)
..+..++++...
T Consensus 296 s~~~~~~~~~~~ 307 (418)
T TIGR00414 296 SAEELEEMTSDA 307 (418)
T ss_pred HHHHHHHHHHHH
Confidence 777777776544
No 80
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.69 E-value=0.00021 Score=70.95 Aligned_cols=112 Identities=17% Similarity=0.293 Sum_probs=73.0
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCC---CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~e---g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
+..-.+.+..+.+.+++.|...||-||.||.+.....- ...++|+..+..
T Consensus 15 lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~--------------------------- 67 (281)
T PRK12293 15 FGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEK--------------------------- 67 (281)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCC---------------------------
Confidence 34457788999999999999999999999999764321 223455443210
Q ss_pred ccCcccccccchhHHH---HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC-HHHHHHHHHHHH
Q 012426 221 FFEKPAFLTVSGQLNA---ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYL 290 (464)
Q Consensus 221 ~f~~~~yL~~Spql~l---qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~dlm~~~e~li 290 (464)
++. |..=|++=. |+++.. --|.|.+|+|||.|. .||+|+.+|.-+.+ ..+++.++-+.+
T Consensus 68 --g~~--l~LRpD~T~~iaR~~a~~~~~~~~p~r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l 136 (281)
T PRK12293 68 --NHQ--ISLRADSTLDVVRIVTKRLGRSTEHKKWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIF 136 (281)
T ss_pred --CCE--EEECCcCCHHHHHHHHHhcccCCCceeEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHH
Confidence 222 222233222 333321 238999999999884 49999999998874 556665555555
Q ss_pred HHH
Q 012426 291 QYV 293 (464)
Q Consensus 291 ~~i 293 (464)
+.+
T Consensus 137 ~~l 139 (281)
T PRK12293 137 EEL 139 (281)
T ss_pred HHc
Confidence 443
No 81
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.68 E-value=0.0001 Score=77.44 Aligned_cols=116 Identities=18% Similarity=0.308 Sum_probs=81.1
Q ss_pred hhhhhHHHHHHHHHHHHhh-hCCcEEEeCceEeecC-CCCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITASD-CEGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~-~~gF~EV~TP~L~~~~-~eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
....++..+|++.+++.+. +.||.||.||.|.... .++.+ ++|.++
T Consensus 167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~------------------------- 221 (425)
T PRK05431 167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE------------------------- 221 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec-------------------------
Confidence 4567899999999999998 9999999999999843 22221 122221
Q ss_pred cccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc------cccccchhccceeccCCHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~------rHl~EFtmlE~e~a~~~~~d 281 (464)
+.+.||....|..+ -++... + =|+|++++|||+|..... -=..||+|.|.+ +|..-++
T Consensus 222 -------~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~ 293 (425)
T PRK05431 222 -------DDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPED 293 (425)
T ss_pred -------CCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHH
Confidence 34567877777666 333322 2 489999999999975210 123499999999 5777777
Q ss_pred HHHHHHHHHHHH
Q 012426 282 DMACATAYLQYV 293 (464)
Q Consensus 282 lm~~~e~li~~i 293 (464)
..+..++++...
T Consensus 294 s~~~~~~~l~~~ 305 (425)
T PRK05431 294 SYAELEELTANA 305 (425)
T ss_pred HHHHHHHHHHHH
Confidence 777777777544
No 82
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.66 E-value=0.00016 Score=78.78 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=74.9
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--CCC-----CCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+|+.+.+.||.||.||+|....- . |.. ++|.+++.
T Consensus 195 ~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~---------------------- 252 (563)
T TIGR00418 195 WLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTEL---------------------- 252 (563)
T ss_pred EeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccC----------------------
Confidence 44567889999999999999999999999999987431 1 211 23332210
Q ss_pred ccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc-----cccccchhccceeccCCHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~a~~~~~d 281 (464)
-++.++|+.-..-.. ++.+.. + -|+|++|+|||+|.+ +. | .-||+|.|+|.-.. .++
T Consensus 253 -------~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-g~~~Gl~R-~reF~q~~~~~~~~-~~~ 322 (563)
T TIGR00418 253 -------DNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQS-GELHGLMR-VRGFTQDDAHIFCT-EDQ 322 (563)
T ss_pred -------CCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCC-cCCcCccc-ccceEEeeeEEEcC-HHH
Confidence 034556655444443 443321 2 389999999999965 32 3 24999999997544 444
Q ss_pred HHHHHHHHH
Q 012426 282 DMACATAYL 290 (464)
Q Consensus 282 lm~~~e~li 290 (464)
.....++++
T Consensus 323 ~~~e~~~~i 331 (563)
T TIGR00418 323 IKEEFKNQF 331 (563)
T ss_pred HHHHHHHHH
Confidence 444434444
No 83
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.66 E-value=0.0002 Score=78.26 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=78.9
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC--CC-----CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+++.+.+.||.||.||+|.... .. |. .++|.+++.
T Consensus 201 ~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~---------------------- 258 (575)
T PRK12305 201 WHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEI---------------------- 258 (575)
T ss_pred EeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhccccccc----------------------
Confidence 4566788999999999999999999999999999853 11 22 234443211
Q ss_pred ccccccccCcccccccch-hHHHHHHhh------ccC-ceEEEccccccCCCCCccc----cccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSG-QLNAETYAT------ALS-NVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Sp-ql~lqll~~------g~~-rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~~~dl 282 (464)
-++.+.|+.-. ..+.++.+. .+. |.|++|+|||+|.+. .+| .-||+|.|++. |.+.+..
T Consensus 259 -------~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~~Gl~R~reF~q~~~~i-f~~~~~~ 329 (575)
T PRK12305 259 -------DEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSG-VLHGLTRVRGFTQDDAHI-FCTPDQI 329 (575)
T ss_pred -------CCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCC-CCcCcccccCeEEcceEE-EeCHHHH
Confidence 02334443221 222233322 232 899999999999873 222 24999999995 6666666
Q ss_pred HHHHHHHHHHHHHH
Q 012426 283 MACATAYLQYVVRY 296 (464)
Q Consensus 283 m~~~e~li~~i~~~ 296 (464)
.+.+.+++..+..-
T Consensus 330 ~~e~~e~i~l~~~~ 343 (575)
T PRK12305 330 EDEILKVLDFVLEL 343 (575)
T ss_pred HHHHHHHHHHHHHH
Confidence 65556666544433
No 84
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.64 E-value=0.00014 Score=72.85 Aligned_cols=117 Identities=18% Similarity=0.290 Sum_probs=79.5
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.....+++.+|.+.+++.+.+.||.||.||.|.+.. .++.+ ++|.++
T Consensus 48 ~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~------------------------- 102 (297)
T cd00770 48 KGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE------------------------- 102 (297)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec-------------------------
Confidence 345679999999999999999999999999999854 23222 233221
Q ss_pred cccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCC------CCccccccchhccceeccCCHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~------~t~rHl~EFtmlE~e~a~~~~~d 281 (464)
+.+++|....+..+ .++..- + =|+|++|+|||+|.. .+---.-||+|.|.+. |..-++
T Consensus 103 -------~~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~ 174 (297)
T cd00770 103 -------GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEE 174 (297)
T ss_pred -------CCCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchH
Confidence 24556766666665 343321 2 389999999999976 1222456999999974 654466
Q ss_pred HHHHHHHHHHHH
Q 012426 282 DMACATAYLQYV 293 (464)
Q Consensus 282 lm~~~e~li~~i 293 (464)
..+..++++...
T Consensus 175 ~~~~~~~~l~~~ 186 (297)
T cd00770 175 SWEELEELISNA 186 (297)
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
No 85
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.60 E-value=0.00022 Score=78.80 Aligned_cols=120 Identities=15% Similarity=0.190 Sum_probs=78.5
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC--CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE--GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e--g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
...-.+++..|.+.+++.+.+.||.||.||+|.... .. |..+-|.- .-
T Consensus 270 ~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~-----------------------------em 320 (639)
T PRK12444 270 LPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKD-----------------------------NM 320 (639)
T ss_pred eeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhh-----------------------------hc
Confidence 344567888899999999999999999999999853 11 22111110 01
Q ss_pred cc----CcccccccchhHHH-HHHhhcc-------CceEEEccccccCCCCC--c-cccccchhccceeccCCHHHHHHH
Q 012426 221 FF----EKPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSNT--S-RHLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 221 ~f----~~~~yL~~Spql~l-qll~~g~-------~rVfeI~~~FR~E~~~t--~-rHl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
|| ++.++|+.-.+-.. ++....+ -|+|++|+|||.|.+.+ . -=.-||+|.|++ .|++-+++...
T Consensus 321 y~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e 399 (639)
T PRK12444 321 YFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDE 399 (639)
T ss_pred CeecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHH
Confidence 11 23455665555554 4443221 38999999999998632 1 012489999999 68887776666
Q ss_pred HHHHHHHH
Q 012426 286 ATAYLQYV 293 (464)
Q Consensus 286 ~e~li~~i 293 (464)
.++++..+
T Consensus 400 ~~~~~~~~ 407 (639)
T PRK12444 400 IKSVMAQI 407 (639)
T ss_pred HHHHHHHH
Confidence 66666443
No 86
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.60 E-value=0.00015 Score=77.34 Aligned_cols=122 Identities=17% Similarity=0.075 Sum_probs=85.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC----CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~----eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
...-.+++..|.+.+++.|.+.||.||.||.|.+.+- .+ ..++|.+++.+.
T Consensus 40 ~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~-------------------- 99 (477)
T PRK08661 40 KPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGG-------------------- 99 (477)
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCC--------------------
Confidence 4556899999999999999999999999999987432 12 335666643210
Q ss_pred ccccccccCcccccccchhHHH-HH----Hhh--cc-CceEEEccccccCCCCCc--cccccchhccceeccCCHHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ET----YAT--AL-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-ql----l~~--g~-~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~~~~dlm~ 284 (464)
.=.+.+++|+...+-.+ .+ +.+ .+ =|+|++++|||+|.. ++ -=.-||+|.|.+.++.+.++..+
T Consensus 100 -----~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~ 173 (477)
T PRK08661 100 -----EKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEE 173 (477)
T ss_pred -----CccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHH
Confidence 00134566765553333 22 221 22 379999999999987 43 23459999999999999888887
Q ss_pred HHHHHHH
Q 012426 285 CATAYLQ 291 (464)
Q Consensus 285 ~~e~li~ 291 (464)
.++.++.
T Consensus 174 e~~~~l~ 180 (477)
T PRK08661 174 ETLEMLE 180 (477)
T ss_pred HHHHHHH
Confidence 7777664
No 87
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=97.58 E-value=0.00025 Score=71.56 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=68.8
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (464)
..-.+.+..+...+++.|.++||.||+||+|..... +...++|.+.+.+
T Consensus 5 p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~------------------------- 59 (314)
T TIGR00443 5 PEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSL------------------------- 59 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCC-------------------------
Confidence 345678899999999999999999999999987432 1122345442211
Q ss_pred ccccCccccccc--chhHHHHHHhh---c---cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 219 QDFFEKPAFLTV--SGQLNAETYAT---A---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 219 ~~~f~~~~yL~~--Spql~lqll~~---g---~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
|+.+-|+. .++ +.+.++. + --|+|++|+|||.|... .-+.-||+|+.+|.-..+
T Consensus 60 ----g~~l~LRpD~T~~-iaR~~~~~~~~~~~p~r~~y~g~VfR~~~~~-~gr~re~~Q~g~Eiig~~ 121 (314)
T TIGR00443 60 ----GRVLGLRPDMTTP-IARAVSTRLRDRPLPLRLCYAGNVFRTNESG-AGRSREFTQAGVELIGAG 121 (314)
T ss_pred ----CCEEeecCcCcHH-HHHHHHHhcccCCCCeEEEEeceEeecCCCc-CCCcccccccceEEeCCC
Confidence 22222221 122 2343332 2 35899999999999974 567889999999986653
No 88
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.54 E-value=0.00034 Score=73.70 Aligned_cols=118 Identities=15% Similarity=0.211 Sum_probs=74.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--C--C-C-----CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G-A-----GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--e--g-~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-...|..+.+.+++.|...||.||.||++..... . | . .++|.+.+.+
T Consensus 14 lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~-------------------- 73 (430)
T CHL00201 14 LPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRS-------------------- 73 (430)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCC--------------------
Confidence 4455778999999999999999999999999987431 1 1 1 3455543211
Q ss_pred CccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCccccccchhccceeccCC-H---HH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KD 281 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~---~d 281 (464)
++.+-|+.=.-... ++++. .. -|.|++|+|||.|.....|- -||+|+++|.-+.+ . -+
T Consensus 74 ---------g~~l~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~~~~aD~E 143 (430)
T CHL00201 74 ---------NRDITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSIDARADTE 143 (430)
T ss_pred ---------CCEEEeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCCChhhHHH
Confidence 22333332111122 33222 12 39999999999998765554 49999999987653 1 24
Q ss_pred HHHHHHHHHH
Q 012426 282 DMACATAYLQ 291 (464)
Q Consensus 282 lm~~~e~li~ 291 (464)
+|.++-+.++
T Consensus 144 vi~l~~~~l~ 153 (430)
T CHL00201 144 VIHLAMQIFN 153 (430)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 89
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.53 E-value=0.00035 Score=72.71 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=75.5
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
...-.+.+..+...+++.|.++||.||.||++..... +...++|.+.+.+
T Consensus 13 lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~----------------------- 69 (391)
T PRK12292 13 LPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQL----------------------- 69 (391)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecC-----------------------
Confidence 3445778999999999999999999999999975321 1123455443220
Q ss_pred ccccccCcccccccchhHHH---HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC-H---HHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNA---ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDM 283 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l---qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~---~dlm 283 (464)
-++. |+.=|++=. |+++.. --|.|++|+|||.|... .-+.-||+|+.+|.-+.+ . -+++
T Consensus 70 -----~g~~--l~LRpD~T~~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~-~gr~ref~Q~g~EiiG~~~~~aDaEvi 141 (391)
T PRK12292 70 -----SGRT--LGLRPDMTAQIARIAATRLANRPGPLRLCYAGNVFRAQERG-LGRSREFLQSGVELIGDAGLEADAEVI 141 (391)
T ss_pred -----CCCE--EEECCCCcHHHHHHHHHhccCCCCCeEEEeeceeeecCCCc-CCCccchhccceEEeCCCCchHHHHHH
Confidence 0122 222232222 333322 23899999999999874 456779999999987754 2 3455
Q ss_pred HHHHHHHHHH
Q 012426 284 ACATAYLQYV 293 (464)
Q Consensus 284 ~~~e~li~~i 293 (464)
.++-+.++.+
T Consensus 142 ~l~~~~l~~l 151 (391)
T PRK12292 142 LLLLEALKAL 151 (391)
T ss_pred HHHHHHHHHc
Confidence 5555554433
No 90
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.52 E-value=0.00045 Score=69.41 Aligned_cols=116 Identities=20% Similarity=0.299 Sum_probs=73.0
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC------CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (464)
...-.+.+..+.+.+++.|..+||.+|+||++.... ++...+.|.+.+.+
T Consensus 6 ~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~------------------------ 61 (311)
T PF13393_consen 6 LPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRS------------------------ 61 (311)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTT------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecC------------------------
Confidence 344578889999999999999999999999998743 12233555543211
Q ss_pred cccccCcccccccchhHHH---HHHhh-----ccCceEEEccccccCCCCCccccccchhccceeccCC-HH---HHHHH
Q 012426 218 SQDFFEKPAFLTVSGQLNA---ETYAT-----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMAC 285 (464)
Q Consensus 218 ~~~~f~~~~yL~~Spql~l---qll~~-----g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~---dlm~~ 285 (464)
|.. |..-|.+=. |+++. -..|+|.+|++||.+... ..+.-||+|+.+|.-..+ .. +++.+
T Consensus 62 -----G~~--l~LR~D~T~~iaR~~a~~~~~~~~~r~~y~g~vfR~~~~~-~g~~re~~Q~g~Eiig~~~~~~daEvi~l 133 (311)
T PF13393_consen 62 -----GRV--LALRPDLTVPIARYVARNLNLPRPKRYYYIGPVFRYERPG-KGRPREFYQCGFEIIGSSSLEADAEVIKL 133 (311)
T ss_dssp -----SSE--EEE-SSSHHHHHHHHHHCCGSSSSEEEEEEEEEEEEETTT-TTBESEEEEEEEEEESSSSHHHHHHHHHH
T ss_pred -----CcE--eccCCCCcHHHHHHHHHhcCcCCCceEEEEcceeeccccC-CCCCceeEEEEEEEECCCCHHHHHHHHHH
Confidence 222 222233322 33333 246899999999999774 456679999999987764 43 55555
Q ss_pred HHHHHH
Q 012426 286 ATAYLQ 291 (464)
Q Consensus 286 ~e~li~ 291 (464)
+-+++.
T Consensus 134 ~~e~l~ 139 (311)
T PF13393_consen 134 ADEILD 139 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 91
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.52 E-value=0.00042 Score=76.66 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=73.7
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+++.|...||.||.||+|....- .| ..++|.+++.
T Consensus 265 ~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~---------------------- 322 (638)
T PRK00413 265 WHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTES---------------------- 322 (638)
T ss_pred EcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecC----------------------
Confidence 45677889999999999999999999999999987431 12 2234544221
Q ss_pred ccccccccCcccccccchh-HHHHHHhh------cc-CceEEEccccccCCCCCccc----cccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQ-LNAETYAT------AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spq-l~lqll~~------g~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~~~dl 282 (464)
-++.+.|+.-.. .+.++.+. .+ -|.|++|+|||+|.+. .+| .-||+|.|++. |..-+..
T Consensus 323 -------~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~~Gl~R~reF~q~~~~~-~g~~~~~ 393 (638)
T PRK00413 323 -------DGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSG-ALHGLMRVRGFTQDDAHI-FCTPEQI 393 (638)
T ss_pred -------CCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCC-CCcCcceeeeeEEeeEEE-EcCHHHH
Confidence 023334432221 11233321 23 2999999999999874 211 24999999997 5544433
Q ss_pred HHHHHHHH
Q 012426 283 MACATAYL 290 (464)
Q Consensus 283 m~~~e~li 290 (464)
.+.+.+++
T Consensus 394 ~~e~~eii 401 (638)
T PRK00413 394 EEEVKKVI 401 (638)
T ss_pred HHHHHHHH
Confidence 33334444
No 92
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.51 E-value=0.00044 Score=73.01 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=79.9
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++.+|.+.+|+.+.+.||.||.||.|.+.. .. | ..++|.+++.
T Consensus 42 ~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~---------------------- 99 (439)
T PRK12325 42 WLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDR---------------------- 99 (439)
T ss_pred ECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecC----------------------
Confidence 3455689999999999999999999999999999752 11 1 2345554321
Q ss_pred ccccccccCcccccccch-hHHHHHH---hhc---c-CceEEEccccccCCCCCccc----cccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSG-QLNAETY---ATA---L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Sp-ql~lqll---~~g---~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~~~dl 282 (464)
-+.+++|.... +.+-.++ +.. + =|+|+++++||+|... +| .-||+|-|+|....+.+++
T Consensus 100 -------~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~--~~GL~R~reF~~~D~h~f~~~~~~a 170 (439)
T PRK12325 100 -------HDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRP--RFGVMRGREFLMKDAYSFDLDEEGA 170 (439)
T ss_pred -------CCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCC--CCCccccceEeEeccEEEeCCHHHH
Confidence 02344555322 3333322 112 3 4899999999999652 33 4699999999987887777
Q ss_pred HHHHHHHHHH
Q 012426 283 MACATAYLQY 292 (464)
Q Consensus 283 m~~~e~li~~ 292 (464)
.+..++++..
T Consensus 171 ~~~~~~~~~~ 180 (439)
T PRK12325 171 RHSYNRMFVA 180 (439)
T ss_pred HHHHHHHHHH
Confidence 6655555543
No 93
>PLN02908 threonyl-tRNA synthetase
Probab=97.47 E-value=0.00038 Score=77.45 Aligned_cols=122 Identities=18% Similarity=0.140 Sum_probs=82.7
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCC--C-----CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEG--A-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg--~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++.+|+..+|+.+.+.||.||.||.|.+.. ..+ . .++|.+..
T Consensus 316 ~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~----------------------- 372 (686)
T PLN02908 316 FLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEI----------------------- 372 (686)
T ss_pred EechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEec-----------------------
Confidence 4566789999999999999999999999999998853 221 1 12333210
Q ss_pred ccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCC---CccccccchhccceeccCCHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~---t~rHl~EFtmlE~e~a~~~~~dlm 283 (464)
-+..++|+.-.+-.. .+... .+ =|+|++|+|||+|.+. +-.=.-||+|.|++. |+.-+++.
T Consensus 373 -------~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~ 444 (686)
T PLN02908 373 -------EKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIK 444 (686)
T ss_pred -------CCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHH
Confidence 023445544443333 33222 12 2899999999999873 212234899999998 87778888
Q ss_pred HHHHHHHHHHHH
Q 012426 284 ACATAYLQYVVR 295 (464)
Q Consensus 284 ~~~e~li~~i~~ 295 (464)
+.+++++..+..
T Consensus 445 ~e~~~~l~~~~~ 456 (686)
T PLN02908 445 DEVKGVLDFLDY 456 (686)
T ss_pred HHHHHHHHHHHH
Confidence 888877765543
No 94
>PLN02530 histidine-tRNA ligase
Probab=97.46 E-value=0.00057 Score=73.11 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=74.5
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.+..-.+.|..|...+++.|...||.||.||+|...+- +...++|...+.
T Consensus 79 ~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~----------------------- 135 (487)
T PLN02530 79 FPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDK----------------------- 135 (487)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECC-----------------------
Confidence 34556788999999999999999999999999987321 111234433211
Q ss_pred cccccccCcccccccchhHHH---HHHhhc-----c-CceEEEccccccCCCCCccccccchhccceeccCC----HHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA---ETYATA-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDD 282 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l---qll~~g-----~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~----~~dl 282 (464)
-++.+-|+ |++=. |+++.- + -|.|++|+|||.|..... +.-||+|+.+|.-+.+ --++
T Consensus 136 ------~g~~l~LR--pD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~g-r~REf~Q~giEiiG~~~~~aDaEv 206 (487)
T PLN02530 136 ------GGRRVALR--PELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRG-RRREHYQWNMDIIGVPGVEAEAEL 206 (487)
T ss_pred ------CCCEEecC--CCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCC-CccceEEcCeeEeCCCCcchhHHH
Confidence 12332232 33322 444331 2 389999999999987433 4679999999987653 2344
Q ss_pred HHHHHHHH
Q 012426 283 MACATAYL 290 (464)
Q Consensus 283 m~~~e~li 290 (464)
+.++.+.+
T Consensus 207 i~l~~~~l 214 (487)
T PLN02530 207 LAAIVTFF 214 (487)
T ss_pred HHHHHHHH
Confidence 44444433
No 95
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=97.39 E-value=0.00064 Score=71.46 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=77.6
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC--CC--C-C----CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD--CE--G-A----GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~--~e--g-~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
.+..-..++..+...+++.|..+||.||.||+|...+ .. + + .++|.+++.+
T Consensus 13 ~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~-------------------- 72 (423)
T PRK12420 13 YLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQG-------------------- 72 (423)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCC--------------------
Confidence 3455678899999999999999999999999998743 11 1 1 2345443211
Q ss_pred CccccccccCcccccccchhHHH---HHHhh--c--cC-ceEEEccccccCCCCCccccccchhccceeccCC----HHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA---ETYAT--A--LS-NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKD 281 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l---qll~~--g--~~-rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~----~~d 281 (464)
|+. |..-|++=. |+++. . .. |.|++|+|||.|... .-+.-||+|+.+|.-..+ --+
T Consensus 73 ---------g~~--l~LRpD~T~~iaR~va~~~~~~~p~r~~y~g~vfR~~~~~-~gr~rE~~Q~g~EiiG~~~~~adaE 140 (423)
T PRK12420 73 ---------KRD--LALRYDLTIPFAKVVAMNPNIRLPFKRYEIGKVFRDGPIK-QGRFREFIQCDVDIVGVESVMAEAE 140 (423)
T ss_pred ---------Cce--ecccccccHHHHHHHHhCcCCCCCeeEEEEcceECCCCCC-CCccceeEECCeeeECCCCCcccHH
Confidence 222 222233322 33332 1 22 899999999999874 456789999999986653 255
Q ss_pred HHHHHHHHHHHH
Q 012426 282 DMACATAYLQYV 293 (464)
Q Consensus 282 lm~~~e~li~~i 293 (464)
++.++-+.++.+
T Consensus 141 vi~la~~~l~~l 152 (423)
T PRK12420 141 LMSMAFELFRRL 152 (423)
T ss_pred HHHHHHHHHHHC
Confidence 666665555443
No 96
>PLN02972 Histidyl-tRNA synthetase
Probab=97.36 E-value=0.0007 Score=74.93 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=77.4
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC------CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
....-..+|..|...+++.|..+||.||+||++.... ++...++|...+..
T Consensus 336 ~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~g----------------------- 392 (763)
T PLN02972 336 FAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQG----------------------- 392 (763)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCC-----------------------
Confidence 5667788999999999999999999999999997532 12222355443211
Q ss_pred ccccccCcccccccchhHHH---HHHhhc---cCceEEEccccccCCCCCccccccchhccceeccC-C----HHHHHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNA---ETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D----LKDDMAC 285 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l---qll~~g---~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~----~~dlm~~ 285 (464)
|+.+-|+ |++=. |+++.. --|.|+||+|||.|... .-+.-||+|+++|..+. + --+++.+
T Consensus 393 ------Gr~LaLR--PDlTvPiAR~vA~n~~~p~KrYyiG~VFR~e~pq-kGR~REF~Q~G~EIIG~~~~~~aDAEVI~L 463 (763)
T PLN02972 393 ------GELCSLR--YDLTVPFARYVAMNGITSFKRYQIAKVYRRDNPS-KGRYREFYQCDFDIAGVYEPMGPDFEIIKV 463 (763)
T ss_pred ------CCEEEeC--CCChHHHHHHHHhCCCCcceEEEeccEEecCCCC-CCCCccceEEeEEEEcCCCcchhhHHHHHH
Confidence 2222222 22222 444321 24788999999999874 44567999999999875 2 2455666
Q ss_pred HHHHHHH
Q 012426 286 ATAYLQY 292 (464)
Q Consensus 286 ~e~li~~ 292 (464)
+-+.++.
T Consensus 464 a~E~L~~ 470 (763)
T PLN02972 464 LTELLDE 470 (763)
T ss_pred HHHHHHh
Confidence 5555544
No 97
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.35 E-value=0.00068 Score=73.19 Aligned_cols=122 Identities=12% Similarity=0.079 Sum_probs=81.5
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-C--CCCC-----CCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-C--EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~--eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.++|..|...+|+.+.+.||.||.||.|.... . .|.- ++|.++ .
T Consensus 163 ~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~-~---------------------- 219 (545)
T PRK14799 163 FHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFN-M---------------------- 219 (545)
T ss_pred EcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceee-c----------------------
Confidence 4566789999999999999999999999999987643 1 1211 223221 0
Q ss_pred ccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc---cccccchhccceeccCCHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS---RHLAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~---rHl~EFtmlE~e~a~~~~~dlm 283 (464)
-+++++|+.-..-.. ++.... + =|.|++|+|||.|.+... .=.-||||.|+.. |++.+++.
T Consensus 220 -------~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~ 291 (545)
T PRK14799 220 -------EGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLR 291 (545)
T ss_pred -------cCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHH
Confidence 023444544443333 333321 2 289999999999988420 2345999999998 88877777
Q ss_pred HHHHHHHHHHHH
Q 012426 284 ACATAYLQYVVR 295 (464)
Q Consensus 284 ~~~e~li~~i~~ 295 (464)
+.+.+++..+..
T Consensus 292 ~E~~~~l~~i~~ 303 (545)
T PRK14799 292 EEIKMLISKTVE 303 (545)
T ss_pred HHHHHHHHHHHH
Confidence 777666655544
No 98
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.33 E-value=0.0011 Score=69.05 Aligned_cols=119 Identities=12% Similarity=0.145 Sum_probs=75.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
...-.+.+..+.+.+++.|..+||.||.||++..... .+ ...+|+..+...
T Consensus 17 lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~---------------------- 74 (392)
T PRK12421 17 LPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLS---------------------- 74 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCC----------------------
Confidence 4455788999999999999999999999999986431 11 123444432100
Q ss_pred ccccccCcccccccchhHHH---HHHhh-----ccCceEEEccccccCCCCCccccccchhccceeccCC-HH---HHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNA---ETYAT-----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMA 284 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l---qll~~-----g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~---dlm~ 284 (464)
|+. |+.=|++=. |+++. .--|.|.+|+|||.+.....| .-||+|+.+|.-+.+ .. +++.
T Consensus 75 ------g~~--l~LRpD~T~~iaR~~a~~~~~~~p~R~~Y~g~VfR~~~~~~gr-~rEf~Q~GvEiiG~~~~~aDaEvi~ 145 (392)
T PRK12421 75 ------GRL--MGVRADITPQVARIDAHLLNREGVARLCYAGSVLHTLPQGLFG-SRTPLQLGAELYGHAGIEADLEIIR 145 (392)
T ss_pred ------CcE--EEECCcCCHHHHHHHHhhcCCCCceEEEEeeeEEEcCCCcCCC-cCccceeceEEeCCCCchhHHHHHH
Confidence 111 222222221 22221 235899999999998764344 469999999987764 33 6666
Q ss_pred HHHHHHHHH
Q 012426 285 CATAYLQYV 293 (464)
Q Consensus 285 ~~e~li~~i 293 (464)
++-+.++.+
T Consensus 146 l~~e~l~~l 154 (392)
T PRK12421 146 LMLGLLRNA 154 (392)
T ss_pred HHHHHHHHc
Confidence 666666554
No 99
>PLN02837 threonine-tRNA ligase
Probab=97.23 E-value=0.0009 Score=73.57 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=79.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCC-------CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGA-------GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~-------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++.+|++.+++...++||.||.||.|.... +++. .++|.+....
T Consensus 242 ~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~--------------------- 300 (614)
T PLN02837 242 WHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIE--------------------- 300 (614)
T ss_pred EechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCC---------------------
Confidence 3466789999999999999999999999999999854 2221 1333321100
Q ss_pred ccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCC---ccccccchhccceeccCCHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT---SRHLAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t---~rHl~EFtmlE~e~a~~~~~dlm 283 (464)
+..+.|+.+.+-.. .+... .+ -|++++++|||+|.+.. --=.-||+|.|.+. |+..++..
T Consensus 301 --------~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~ 371 (614)
T PLN02837 301 --------DELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIK 371 (614)
T ss_pred --------CceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHH
Confidence 11122333332221 22211 12 37999999999998621 11234899999996 98888888
Q ss_pred HHHHHHHHHHH
Q 012426 284 ACATAYLQYVV 294 (464)
Q Consensus 284 ~~~e~li~~i~ 294 (464)
+..++++..+.
T Consensus 372 ~e~~~~l~~~~ 382 (614)
T PLN02837 372 DEIRGVLDLTE 382 (614)
T ss_pred HHHHHHHHHHH
Confidence 88887776543
No 100
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.11 E-value=0.0017 Score=71.10 Aligned_cols=124 Identities=16% Similarity=0.196 Sum_probs=82.7
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeec---CCCCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITAS---DCEGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~---~~eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
...-.+++..|.+.+++.+.+.||.+|.||.+... ...|. .++|.++..
T Consensus 223 ~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~----------------------- 279 (613)
T PRK03991 223 YPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSD----------------------- 279 (613)
T ss_pred EcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCC-----------------------
Confidence 45678999999999999999999999999999443 22222 234443210
Q ss_pred cccccccCcccccccchhHHHH-HHh---h---cc-CceEEEcc-ccccCCCCC---ccccccchhccceeccCCHHHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNAE-TYA---T---AL-SNVYTFGP-TFRAENSNT---SRHLAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~lq-ll~---~---g~-~rVfeI~~-~FR~E~~~t---~rHl~EFtmlE~e~a~~~~~dlm 283 (464)
+.+++|+...+...= +.. . .+ -|+|++|+ |||+|.+.. -.=+-||+|.|.+.-..+.++.+
T Consensus 280 -------~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~ 352 (613)
T PRK03991 280 -------KKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAM 352 (613)
T ss_pred -------CceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHH
Confidence 234455544443331 111 1 12 37999999 999997621 12345899999998666689999
Q ss_pred HHHHHHHHHHHHHH
Q 012426 284 ACATAYLQYVVRYI 297 (464)
Q Consensus 284 ~~~e~li~~i~~~~ 297 (464)
+..++++..+..-+
T Consensus 353 ~e~~~~l~~~~~i~ 366 (613)
T PRK03991 353 EEFEKQYEMILETG 366 (613)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887654433
No 101
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0026 Score=66.45 Aligned_cols=119 Identities=23% Similarity=0.310 Sum_probs=77.3
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------CC----CCCCceeeecCCCcccccCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKD 212 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~ 212 (464)
....-...+..|...+|+.+.+.||.||.||++-...- |. ..+++..++.
T Consensus 13 ~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dk-------------------- 72 (429)
T COG0124 13 FLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDK-------------------- 72 (429)
T ss_pred cChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeC--------------------
Confidence 34456788999999999999999999999999876431 11 0112221111
Q ss_pred CCccccccccCcccccccchhHH--H-HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC----H
Q 012426 213 GLIDWSQDFFEKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----L 279 (464)
Q Consensus 213 ~~~~~~~~~f~~~~yL~~Spql~--l-qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~----~ 279 (464)
-++.+-|+ |++= . |+++.- --|.|.++||||.|.....|-- ||+|+++|....+ -
T Consensus 73 ---------ggr~laLR--pe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~R-qF~Q~g~E~iG~~~~~~D 140 (429)
T COG0124 73 ---------GGRSLALR--PELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYR-QFYQFGVEVIGSDSPDAD 140 (429)
T ss_pred ---------CCCEEEec--ccCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCce-eeEEcCeEEeCCCCcccC
Confidence 02222222 2221 1 443321 2489999999999998767764 9999999998763 3
Q ss_pred HHHHHHHHHHHHHH
Q 012426 280 KDDMACATAYLQYV 293 (464)
Q Consensus 280 ~dlm~~~e~li~~i 293 (464)
-+++.++.++++.+
T Consensus 141 AEvi~l~~~~l~~l 154 (429)
T COG0124 141 AEVIALAVEILEAL 154 (429)
T ss_pred HHHHHHHHHHHHHc
Confidence 56666666666554
No 102
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=97.02 E-value=0.01 Score=46.64 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=54.6
Q ss_pred EEEEEEEeeeec-CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEE
Q 012426 32 IVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 32 V~v~GwV~~iR~-~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (464)
++|.|-|.++|. .++++|+.|.|.++ .+.+++-++. ++..+. .|..|+.|.|+|.+...... +++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~--~i~~~~f~~~--~~~~~~-~l~~g~~v~v~g~v~~~~~~-~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDA--SIRCVMWRSN--ARRLGF-PLEEGMEVLVRGKVSFYEPR-GGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCe--EEEEEEEcch--hhhCCC-CCCCCCEEEEEEEEEEECCC-CEEEEEEEEEE
Confidence 688999999986 44599999999986 5999887652 333322 49999999999999864322 34788887764
No 103
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.95 E-value=0.0072 Score=47.46 Aligned_cols=73 Identities=15% Similarity=0.319 Sum_probs=55.0
Q ss_pred EEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEE
Q 012426 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (464)
Q Consensus 32 V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~v 111 (464)
|+|.|=|.+.+..++-+|+.|+|+.+ .|.|++-+... ...... +..||-|.|.|.+.- +. +.+.+.++++++
T Consensus 1 v~v~GeVs~~~~~~GHvyfsLkD~~a--~i~cv~f~~~~-~~~~~~--l~~Gd~V~v~G~v~~-~~--G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTSGPTIFTLRDETG--TVWAAAFEEAG-VRAYPE--VEVGDIVRVTGEVEP-RD--GQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCCCCEEEEEEcCCE--EEEEEEEchhc-cCCcCC--CCCCCEEEEEEEEec-CC--eEEEEEEeeEEE
Confidence 57889888775477779999999874 59998865432 111234 999999999999875 43 459999999987
Q ss_pred E
Q 012426 112 V 112 (464)
Q Consensus 112 l 112 (464)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
No 104
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=96.88 E-value=0.016 Score=47.55 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=57.4
Q ss_pred EEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccch--hhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeE
Q 012426 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (464)
Q Consensus 32 V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~--~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i 109 (464)
|++.|+|.++...++-.=+.|.|+||. |-+.+....+.. ..... +..|+.|.|.|.+..-+ +...|.+..+
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG~--I~~~~W~~~~~~~~~~~~~--~~~g~~v~v~G~v~~~~---g~~ql~i~~i 74 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTGT--IEVRQWLDDDNDDSSEVEP--IEEGTYVRVFGNLKSFQ---GKKSIMAFSI 74 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCCc--EEEEEeCCCCCcccccccc--cccCCEEEEEEEEcccC---CeeEEEEEEE
Confidence 789999999999876666789999984 998887554321 12345 99999999999997655 2367777777
Q ss_pred EEEec
Q 012426 110 VLVGK 114 (464)
Q Consensus 110 ~vls~ 114 (464)
..+..
T Consensus 75 ~~v~d 79 (95)
T cd04478 75 RPVTD 79 (95)
T ss_pred EEeCC
Confidence 76554
No 105
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=96.88 E-value=0.0024 Score=67.68 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=37.5
Q ss_pred ceEEEccccccCCCCCcccc----ccchhccceeccCCHHHHHHHHHHHHHHHHH
Q 012426 245 NVYTFGPTFRAENSNTSRHL----AEFWMIEPELAFADLKDDMACATAYLQYVVR 295 (464)
Q Consensus 245 rVfeI~~~FR~E~~~t~rHl----~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~ 295 (464)
|+.|+|+|||+|.+ + +|- -||+|.|++ .|++-+++.+.+..++..+..
T Consensus 188 r~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~ 239 (456)
T PRK04173 188 GIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKN 239 (456)
T ss_pred eeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHH
Confidence 79999999999987 4 443 799999997 688877777776666655443
No 106
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.86 E-value=0.0011 Score=69.01 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=44.9
Q ss_pred CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|++|+|||+|...+.+|+++|+|+|.-++.. ++.|++.+++.|++.+
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999643479999999999998886 5999999999999988
No 107
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.85 E-value=0.0043 Score=64.12 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhhCCcEEEeCceEeecCC--C-----CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 012426 152 NALAYATHKFFQENGFIWISSPIITASDC--E-----GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (464)
Q Consensus 152 s~i~~~~r~ff~~~gF~EV~TP~L~~~~~--e-----g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (464)
..+.+.+++.|..+||.||.||++..... . ...++|.+.+.+ ++
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~-----------------------------G~ 58 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDEN-----------------------------GE 58 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCC-----------------------------CC
Confidence 37889999999999999999999987431 1 112345443211 11
Q ss_pred ccccccchhHHH---HHHhh----ccCceEEEccccccCCCCCccccccchhccceeccC-C-H---HHHHHHHHHHHHH
Q 012426 225 PAFLTVSGQLNA---ETYAT----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACATAYLQY 292 (464)
Q Consensus 225 ~~yL~~Spql~l---qll~~----g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~-~---~dlm~~~e~li~~ 292 (464)
.+-| =|++=. |+++. .--|.|.+|+|||.|.. | .-||+|+.+|.-.. + . -+++.++-+.++.
T Consensus 59 ~l~L--RpD~T~piaR~~~~~~~~~p~R~~Y~g~VfR~~~g---r-~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~ 132 (373)
T PRK12295 59 ELCL--RPDFTIPVCRRHIATAGGEPARYAYLGEVFRQRRD---R-ASEFLQAGIESFGRADPAAADAEVLALALEALAA 132 (373)
T ss_pred EEee--CCCCcHHHHHHHHHcCCCCCeEEEEEccEEECCCC---C-CCcceEeeEEeeCCCCCccchHHHHHHHHHHHHH
Confidence 1112 122211 22222 23489999999999922 2 46999999999774 3 2 3677777766655
Q ss_pred H
Q 012426 293 V 293 (464)
Q Consensus 293 i 293 (464)
+
T Consensus 133 l 133 (373)
T PRK12295 133 L 133 (373)
T ss_pred c
Confidence 4
No 108
>PLN02678 seryl-tRNA synthetase
Probab=96.65 E-value=0.0056 Score=64.49 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC
Q 012426 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD 179 (464)
Q Consensus 146 ~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~ 179 (464)
...+++.+|++.+++++.++||.||.||.|....
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~ 205 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKD 205 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHH
Confidence 5688999999999999999999999999998743
No 109
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=96.40 E-value=0.04 Score=45.26 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=51.5
Q ss_pred EEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccch-------------------hhhhcCCCCCCcEEEEEEEEEe
Q 012426 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-------------------DQVKSGLITTGASIWIQGNVVP 94 (464)
Q Consensus 34 v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~-------------------~~~~~~~l~~g~~V~V~G~v~~ 94 (464)
|.|+|.+++......-+.|.|+||. |-|++-.....- +.... +.+|++|.|.|.+..
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG~--Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTGV--VNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKV--LEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCce--EEEEEEcCcCcccccccccccccccccccccccccc--cCCCCEEEEEEEEec
Confidence 6799999998877777889999984 888887543200 22445 999999999999987
Q ss_pred CCCCCceEEEEEeeEE
Q 012426 95 SQGSKQKVELKVNKIV 110 (464)
Q Consensus 95 ~~~~~~~~el~~~~i~ 110 (464)
=++. ..|.++.+.
T Consensus 78 frg~---~ql~i~~~~ 90 (92)
T cd04483 78 YRGE---REINASVVY 90 (92)
T ss_pred cCCe---eEEEEEEEE
Confidence 6532 566666553
No 110
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.0099 Score=63.23 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=86.4
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-------CC-CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-------eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
+.--++++.+|.+.+|+.|++-|..||.-|.|+++.- ++ +.++|.+++.+
T Consensus 43 lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg---------------------- 100 (500)
T COG0442 43 LPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRG---------------------- 100 (500)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccC----------------------
Confidence 4456899999999999999999999999999999431 22 34677776422
Q ss_pred cccccccCcccccccchhHHH-HHHh---hc---c-CceEEEccccccCCCCC--ccccccchhccceeccCCHHHHHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYA---TA---L-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~---~g---~-~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
++++.|+...|--. -++. .+ + =++|||...||+|.-.+ ---.-||+|=|.|..+.|.+++...
T Consensus 101 -------~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~ 173 (500)
T COG0442 101 -------DRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEET 173 (500)
T ss_pred -------CceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHH
Confidence 34555554444333 2322 22 2 47999999999996421 1135699999999999999999988
Q ss_pred HHHHHH
Q 012426 286 ATAYLQ 291 (464)
Q Consensus 286 ~e~li~ 291 (464)
.++++.
T Consensus 174 y~~~~~ 179 (500)
T COG0442 174 YEKMLD 179 (500)
T ss_pred HHHHHH
Confidence 888774
No 111
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=96.23 E-value=0.035 Score=46.22 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=59.3
Q ss_pred CCEEEEEEEEeeeec-CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 29 GLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~-~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
-+.|+|.|=|.+.+. .++-+|++|.|+. ..|+|++-+.. +..+....+..|+-|.|.|.+.--+.. +.+.+.+.
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~--a~i~~~~~~~~--~~~i~~~~l~~G~~V~v~g~~~~y~~~-G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEE--ASISCVIFRSR--ARRIRGFDLKDGDKVLVRGRVSFYEPR-GSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCC--cEEEEEEEHHH--HhhCCCCCCCCCCEEEEEEEEEEECCC-cEEEEEEE
Confidence 378999999999999 5889999999987 46999998643 222220129999999999999765443 34888888
Q ss_pred eEE
Q 012426 108 KIV 110 (464)
Q Consensus 108 ~i~ 110 (464)
+|+
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 764
No 112
>PLN02320 seryl-tRNA synthetase
Probab=96.18 E-value=0.01 Score=63.06 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc---
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--- 222 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--- 222 (464)
..++..++++.++++..++||.||.||.|.... .++.+. + ....+ ...|
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~-~-p~~e~-------------------------~~~y~ie 284 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGF-Q-PRGDN-------------------------TQVYSID 284 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCC-C-ccccc-------------------------CceeEEC
Confidence 444667888889998899999999999999854 344332 1 00000 0000
Q ss_pred Ccccccccchh-----HHH-HHHh-hcc-CceEEEccccccCCCCCcc------ccccchhccceeccCCHHHHHHHHHH
Q 012426 223 EKPAFLTVSGQ-----LNA-ETYA-TAL-SNVYTFGPTFRAENSNTSR------HLAEFWMIEPELAFADLKDDMACATA 288 (464)
Q Consensus 223 ~~~~yL~~Spq-----l~l-qll~-~g~-~rVfeI~~~FR~E~~~t~r------Hl~EFtmlE~e~a~~~~~dlm~~~e~ 288 (464)
+...||.-..| +|. +.+. ..+ =|++++++|||.|.+...+ =.-+|+++|... |..-++..+..++
T Consensus 285 ~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ 363 (502)
T PLN02320 285 GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEE 363 (502)
T ss_pred CCceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHH
Confidence 23345532222 344 3321 223 4899999999999662111 223799999976 6667777777777
Q ss_pred HHHHH
Q 012426 289 YLQYV 293 (464)
Q Consensus 289 li~~i 293 (464)
|+..+
T Consensus 364 ll~~~ 368 (502)
T PLN02320 364 LIQIE 368 (502)
T ss_pred HHHHH
Confidence 77554
No 113
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=96.14 E-value=0.021 Score=59.89 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=27.7
Q ss_pred ceEEEccccccCCCCCccccccchhccceeccC
Q 012426 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (464)
Q Consensus 245 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 277 (464)
++...|.|||.+..| .+|.|-|+|+|.-+.+.
T Consensus 135 ~~i~~G~VYRrD~iD-atH~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 135 GFLISADVYRRDEID-KTHYPVFHQADGAAIRK 166 (460)
T ss_pred eeEeecceeeCCCCc-cccCccceeeEEEEEec
Confidence 388999999999996 89999999999665553
No 114
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=96.12 E-value=0.053 Score=44.41 Aligned_cols=74 Identities=19% Similarity=0.408 Sum_probs=54.7
Q ss_pred EEEEEEEeeeec--CCCeEEEEEEeCcCCcceEEEEeCCccchhh-hhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEee
Q 012426 32 IVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (464)
Q Consensus 32 V~v~GwV~~iR~--~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~ 108 (464)
++|.|.|.+++. .|+-+|+.|.|+++ .|.+++=+....+.. ... |..||-|.|.|.+..-. .|.+++
T Consensus 1 ~~v~GeVs~~~~~~~sGH~yFtlkD~~~--~i~cv~f~~~g~~~~~~~~--l~~Gd~V~v~G~v~~y~------ql~ve~ 70 (91)
T cd04482 1 YRVTGKVVEEPRTIEGGHVFFKISDGTG--EIDCAAYEPTKEFRDVVRL--LIPGDEVTVYGSVRPGT------TLNLEK 70 (91)
T ss_pred CEEEEEEeCCeecCCCCCEEEEEECCCc--EEEEEEECcccccccccCC--CCCCCEEEEEEEEecCC------EEEEEE
Confidence 378999998865 46789999999885 488877544311222 245 99999999999986543 588888
Q ss_pred EEEEecC
Q 012426 109 IVLVGKS 115 (464)
Q Consensus 109 i~vls~~ 115 (464)
+++++..
T Consensus 71 l~~~glg 77 (91)
T cd04482 71 LRVIRLA 77 (91)
T ss_pred EEECCCc
Confidence 8887654
No 115
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.011 Score=61.51 Aligned_cols=114 Identities=18% Similarity=0.308 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc---
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--- 222 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--- 222 (464)
+.++--++++.+=++..++||+|+.+|.|..... -|.+.. .. ++.+.|
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgql--pk--------------------------f~e~~y~v~ 224 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQL--PK--------------------------FEEDLYKVE 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCC--CC--------------------------CcccceEec
Confidence 3445555566666666789999999999998553 222221 00 011222
Q ss_pred CcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCC--------ccccccchhccceeccCCHHHHHHHH
Q 012426 223 EKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT--------SRHLAEFWMIEPELAFADLKDDMACA 286 (464)
Q Consensus 223 ~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t--------~rHl~EFtmlE~e~a~~~~~dlm~~~ 286 (464)
+..+||....+.-+ .++.. .+ -+++-.+||||.|.... +.| +|.++|.-. |..-++-....
T Consensus 225 ~~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvH--QF~KVE~v~-~~~Pe~S~~~~ 301 (429)
T COG0172 225 DPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVH--QFDKVELVV-ITKPEESEEEL 301 (429)
T ss_pred CCCEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeee--eeeeEEEEE-EeCcchhHHHH
Confidence 12467877776666 34322 23 36778899999996521 235 899999843 55455555555
Q ss_pred HHHHH
Q 012426 287 TAYLQ 291 (464)
Q Consensus 287 e~li~ 291 (464)
|+|+.
T Consensus 302 E~m~~ 306 (429)
T COG0172 302 EEMLG 306 (429)
T ss_pred HHHHH
Confidence 55553
No 116
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=96.06 E-value=0.028 Score=59.65 Aligned_cols=143 Identities=11% Similarity=0.030 Sum_probs=82.1
Q ss_pred hhhhhHHHHHHHHHHHHh-hhCCcEEEeCceEeecCC---CCCCC-----CceeeecCCCcccccCCCCCCCCCCC--CC
Q 012426 145 GAVARVRNALAYATHKFF-QENGFIWISSPIITASDC---EGAGE-----QFCVTTLIPSSREAAESPVDAIPKTK--DG 213 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff-~~~gF~EV~TP~L~~~~~---eg~~~-----~F~vt~~~~~~~~~~~~~~~~~~~~~--~~ 213 (464)
....++..++.+.+.+++ .+.||.||.+|.|.+... ++.-+ +|.|++... +.+..+...... ++
T Consensus 220 p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~-----d~d~~~~f~~~~~~~~ 294 (520)
T TIGR00415 220 PKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKR-----DPELFEEFKNELIIKK 294 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCC-----Ccchhhcccccccccc
Confidence 345667777888886555 556999999999998432 23333 333432110 000000000000 00
Q ss_pred Ccc---ccccccCcccccccchhHHH-HHHhh------cc-CceEEEc-cccccCCCC--CccccccchhccceeccCCH
Q 012426 214 LID---WSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFG-PTFRAENSN--TSRHLAEFWMIEPELAFADL 279 (464)
Q Consensus 214 ~~~---~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~-~~FR~E~~~--t~rHl~EFtmlE~e~a~~~~ 279 (464)
.+. .+...-..+++|+.+.+..+ .+++. .+ -++|+++ +|||.|... .-.=.-||+|.|.-. +.+.
T Consensus 295 eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tp 373 (520)
T TIGR00415 295 EIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEP 373 (520)
T ss_pred ccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCH
Confidence 000 00000122566888888777 44432 22 4789955 799999852 222345999999988 8899
Q ss_pred HHHHHHHHHHHHHH
Q 012426 280 KDDMACATAYLQYV 293 (464)
Q Consensus 280 ~dlm~~~e~li~~i 293 (464)
++..+..++++...
T Consensus 374 Eea~e~~e~mle~~ 387 (520)
T TIGR00415 374 EETEEIRDKTLELA 387 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888543
No 117
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=95.71 E-value=0.075 Score=51.97 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=55.4
Q ss_pred CCEEEEEEEEeeeecC----CCeEEEEEEeCcCCcceEEEEeCCccc-h-hhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 29 GLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEG-Y-DQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~----g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~-~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
=+.|+|.|.|.++... .+.+|+.|-|+||...|.|++...... . -.+.. + .|++|.|.|.+. . +..
T Consensus 66 I~~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~--~-~G~~V~VkG~vs---r--~~~ 137 (256)
T PF10451_consen 66 IRWVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPIND--L-IGKVVEVKGTVS---R--NER 137 (256)
T ss_dssp E-EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT----TT-EEEEEEEEE---S--SSE
T ss_pred cEEEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccC--C-CCcEEEEEEEEc---c--CcE
Confidence 4679999999999865 789999999999832588988854210 0 11334 6 999999999998 2 347
Q ss_pred EEEEeeEEEEec
Q 012426 103 ELKVNKIVLVGK 114 (464)
Q Consensus 103 el~~~~i~vls~ 114 (464)
+|.++.+.++..
T Consensus 138 ql~ve~i~~~~~ 149 (256)
T PF10451_consen 138 QLDVERIELVRD 149 (256)
T ss_dssp EEEEEEEEEETS
T ss_pred EEEEEEEEccCC
Confidence 899998887753
No 118
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.58 E-value=0.068 Score=52.83 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC
Q 012426 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD 179 (464)
Q Consensus 146 ~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~ 179 (464)
..+..+..+.+.+++.|..+||-+|.||++-..+
T Consensus 5 ~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d 38 (272)
T PRK12294 5 EQLIALKESETAFLKYFNKADYELVDFSVIEKLD 38 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHH
Confidence 3455677888999999999999999999997643
No 119
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=95.45 E-value=0.019 Score=61.37 Aligned_cols=143 Identities=12% Similarity=0.048 Sum_probs=76.7
Q ss_pred chhhhhHHHHHHHHHHHH-hhhCCcEEEeCceEeecCC---CCCC-----CCceeeecC-CCcccccCC----CCCCCCC
Q 012426 144 FGAVARVRNALAYATHKF-FQENGFIWISSPIITASDC---EGAG-----EQFCVTTLI-PSSREAAES----PVDAIPK 209 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~f-f~~~gF~EV~TP~L~~~~~---eg~~-----~~F~vt~~~-~~~~~~~~~----~~~~~~~ 209 (464)
.....++...+.+.+++. ..+.||.||.||.|.+... .|.- ++|.|++.. ....+.+.. +...++-
T Consensus 219 ~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl 298 (517)
T PRK00960 219 TPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPI 298 (517)
T ss_pred EChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccc
Confidence 345678888888888876 4566999999999998432 2322 344443210 000000000 0000000
Q ss_pred CCCCCccccccccCcccccccchhHHH-HHHhh----ccC---ceEE-EccccccCCC--CCccccccchhccceeccCC
Q 012426 210 TKDGLIDWSQDFFEKPAFLTVSGQLNA-ETYAT----ALS---NVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 210 ~~~~~~~~~~~~f~~~~yL~~Spql~l-qll~~----g~~---rVfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~a~~~ 278 (464)
. +.....-+....|+.+...+. -+... .-+ |+|+ .|+|||+|.. ++-.=.-||+|.|.- .|++
T Consensus 299 ~-----~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~t 372 (517)
T PRK00960 299 E-----KLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGT 372 (517)
T ss_pred c-----ccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeC
Confidence 0 000000011223433333333 22221 112 7899 5599999952 222233499999998 7889
Q ss_pred HHHHHHHHHHHHHH
Q 012426 279 LKDDMACATAYLQY 292 (464)
Q Consensus 279 ~~dlm~~~e~li~~ 292 (464)
-+++.+..++++.+
T Consensus 373 pEqs~ee~e~ll~~ 386 (517)
T PRK00960 373 PEQVEEIRDELLKY 386 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999844
No 120
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=95.36 E-value=0.18 Score=37.88 Aligned_cols=68 Identities=18% Similarity=0.396 Sum_probs=50.1
Q ss_pred EEEEEEeeeecCC---CeEEEEEEeCc-CCcceEEEEeCCccchhhh-hcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 33 VVAGWVRTLRAQS---SVTFIEVNDGS-CLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 33 ~v~GwV~~iR~~g---~~~Fi~LrD~s-g~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
++.|.|.+++... ..+++.|.|++ + .+.+++-.+. +... .. +..|+.|.|.|++.... +...+.+.
T Consensus 1 ~v~g~v~~~~~~~~~~~~~~~~l~D~~~~--~i~~~~~~~~--~~~~~~~--~~~g~~v~v~g~v~~~~---~~~~l~~~ 71 (75)
T cd03524 1 TIVGIVVAVEEIRTEGKVLIFTLTDGTGG--TIRVTLFGEL--AEELENL--LKEGQVVYIKGKVKKFR---GRLQLIVE 71 (75)
T ss_pred CeEEEEEeecccccCCeEEEEEEEcCCCC--EEEEEEEchH--HHHHHhh--ccCCCEEEEEEEEEecC---CeEEEEee
Confidence 3688898887764 78999999999 5 4888887642 2222 34 99999999999997643 33666665
Q ss_pred eE
Q 012426 108 KI 109 (464)
Q Consensus 108 ~i 109 (464)
++
T Consensus 72 ~~ 73 (75)
T cd03524 72 SI 73 (75)
T ss_pred ee
Confidence 44
No 121
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=95.12 E-value=0.29 Score=38.98 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=44.3
Q ss_pred EEEEEEEeeeecC--CCeEEEEEEeCcCCcceEEEEeCCccchh--hhhcCCCCCCcEEEEEEEEEe
Q 012426 32 IVVAGWVRTLRAQ--SSVTFIEVNDGSCLSNMQCVMTSDAEGYD--QVKSGLITTGASIWIQGNVVP 94 (464)
Q Consensus 32 V~v~GwV~~iR~~--g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~--~~~~~~l~~g~~V~V~G~v~~ 94 (464)
|.++|-|.++|.. |+. |+.|.|.+|. +.+++-++ .|+ ..+. .|..+.+|.|+|++..
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~--~Ev~~F~~--~~~~~~~~~-~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGR--ITVLLTKD--KEELFEEAE-DILPDEVIGVSGTVSK 62 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCE--EEEEEeCc--hhhhhhhhh-hccCCCEEEEEEEEec
Confidence 6889999998732 556 9999999984 99998765 344 4332 4899999999999954
No 122
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=95.01 E-value=0.06 Score=57.24 Aligned_cols=79 Identities=15% Similarity=0.308 Sum_probs=56.9
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEE
Q 012426 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (464)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~ 105 (464)
+..|++|+|.|-|..++.-++-+-+.|+|++|. +++-.=.. .+...... +.+||+|.|.|.|....+. +.|.
T Consensus 210 ~~ig~tV~I~GeV~qikqT~GPTVFtltDetg~--i~aAAFe~-aGvRAyP~--IevGdiV~ViG~V~~r~g~---lQiE 281 (715)
T COG1107 210 EMIGKTVRIEGEVTQIKQTSGPTVFTLTDETGA--IWAAAFEE-AGVRAYPE--IEVGDIVEVIGEVTRRDGR---LQIE 281 (715)
T ss_pred hhcCceEEEEEEEEEEEEcCCCEEEEEecCCCc--eehhhhcc-CCcccCCC--CCCCceEEEEEEEeecCCc---EEEe
Confidence 378999999999999999877777789999985 77642111 11111235 9999999999999887643 5555
Q ss_pred EeeEEEE
Q 012426 106 VNKIVLV 112 (464)
Q Consensus 106 ~~~i~vl 112 (464)
+.+++.|
T Consensus 282 ~~~me~L 288 (715)
T COG1107 282 IEAMEKL 288 (715)
T ss_pred ehhhHHh
Confidence 5556554
No 123
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=94.98 E-value=0.18 Score=42.26 Aligned_cols=81 Identities=15% Similarity=0.259 Sum_probs=51.3
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEE
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G 90 (464)
..++++++.. ..++.|++.|.|.+.-..- - ...+|++| .|+|-++.+. |. -.. +++++-|.+.|
T Consensus 22 ~~TV~~a~~~------~Dd~~V~L~G~Iv~~l~~d--~-Y~F~D~TG--~I~VeId~~~--w~-g~~--vt~~~~Vri~G 85 (103)
T PF04076_consen 22 VTTVAQAKNA------KDDTPVTLEGNIVKQLGDD--K-YLFRDATG--EIEVEIDDDV--WR-GQT--VTPDDKVRISG 85 (103)
T ss_dssp ---HHHHTTS-------SSEEEEEEEEEEEEEETT--E-EEEEETTE--EEEEE--GGG--ST-T------TTSEEEEEE
T ss_pred eEeHHHHhhC------cCCCeEEEEEEEEEEecCC--E-EEEECCCC--cEEEEEChhh--cC-Ccc--cCCCCEEEEEE
Confidence 3567777653 5689999999986554332 2 44899998 4999888652 11 123 89999999999
Q ss_pred EEEeCCCCCceEEEEEeeEE
Q 012426 91 NVVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 91 ~v~~~~~~~~~~el~~~~i~ 110 (464)
+|-+.-. ..+|.|..|+
T Consensus 86 eVDk~~~---~~~IdV~~I~ 102 (103)
T PF04076_consen 86 EVDKDWN---KTEIDVDRIE 102 (103)
T ss_dssp EEEEETT---EEEEEEEEEE
T ss_pred EEeCCCC---ceEEEEEEEE
Confidence 9996542 3788887764
No 124
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.089 Score=52.98 Aligned_cols=125 Identities=23% Similarity=0.186 Sum_probs=79.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCC-------CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEG-------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg-------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
+.-.+|.-.++++.++.-|++-|=.+|.-|+|++.. ++. +.++|.+.+.+
T Consensus 48 LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~---------------------- 105 (457)
T KOG2324|consen 48 LPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRK---------------------- 105 (457)
T ss_pred ccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccC----------------------
Confidence 344578889999999999999999999999999843 332 45666653211
Q ss_pred cccccccCcccccccchhHHH-HHHhhcc--------CceEEEccccccCCCC--CccccccchhccceeccCCHHHHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATAL--------SNVYTFGPTFRAENSN--TSRHLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g~--------~rVfeI~~~FR~E~~~--t~rHl~EFtmlE~e~a~~~~~dlm~ 284 (464)
++...|+..-|=-- .+|+.-. =+|||||+=||+|--- +-----||.|=|.|.=..|-++.|+
T Consensus 106 -------gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~q 178 (457)
T KOG2324|consen 106 -------GKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQ 178 (457)
T ss_pred -------CCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHH
Confidence 34444554443333 4555433 2899999999999420 1112249999999973334555554
Q ss_pred HHHHHHHHHHHHHh
Q 012426 285 CATAYLQYVVRYIL 298 (464)
Q Consensus 285 ~~e~li~~i~~~~~ 298 (464)
+-.++..+...+.
T Consensus 179 -Ty~~v~~aY~~iF 191 (457)
T KOG2324|consen 179 -TYQLVDQAYDRIF 191 (457)
T ss_pred -HHHHHHHHHHHHH
Confidence 3344444444444
No 125
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=94.87 E-value=0.22 Score=42.62 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEE
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~ 106 (464)
..+..|++.|-|.+. .|.=.| ..||+|| .|+|.++.+. +....+++.|-|.+.|++-+.-. ..||.|
T Consensus 55 ~Dda~V~l~GnIv~q--i~~D~y-~FrD~sG--eI~VeIdd~~-----w~g~tv~P~dkV~I~GevDk~~~---~~eIdV 121 (128)
T COG3111 55 HDDAWVSLEGNIVRQ--IGDDRY-VFRDASG--EINVDIDDKV-----WNGQTVTPKDKVRIQGEVDKDWN---SVEIDV 121 (128)
T ss_pred ccCCeEEEEeeEEEe--eCCceE-EEEcCCc--cEEEEecccc-----cCCcccCcccEEEEEeEEcCCCc---cceeEh
Confidence 567899999998543 333344 4899998 5999998653 11123999999999999977532 378888
Q ss_pred eeEEEE
Q 012426 107 NKIVLV 112 (464)
Q Consensus 107 ~~i~vl 112 (464)
..|+.+
T Consensus 122 ~~I~k~ 127 (128)
T COG3111 122 KHIEKL 127 (128)
T ss_pred hheEec
Confidence 888765
No 126
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=94.80 E-value=0.17 Score=47.08 Aligned_cols=97 Identities=12% Similarity=0.207 Sum_probs=66.7
Q ss_pred ccceecccccCCCCC--C-----CCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc-hhhhhcCCC
Q 012426 9 RKKLKIVDVKGGPNE--G-----LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLI 80 (464)
Q Consensus 9 ~~~~~i~~l~~~~~~--~-----~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~~~~~~~~l 80 (464)
.+.++|++|+..... + ...+-..|++-|||.++..+-.-+|+.|.||+|. |-|-..+.... .++.+. +
T Consensus 39 LrpvTIKQIl~~~qd~~d~~f~vd~~Ev~~V~fVGvvrni~~~ttn~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d--~ 114 (258)
T COG5235 39 LRPVTIKQILSCDQDETDSTFLVDSAEVTNVQFVGVVRNIKTSTTNSMFVIEDGTGS--IEVRFWPGNSYEEEQCKD--L 114 (258)
T ss_pred eeeeEHHHhhcccccccCCceeecceEEeeEEEEEEEEeeeecccceEEEEecCCce--EEEEecCCCchHHHhccc--c
Confidence 456889999874211 0 0111235889999999999988899999999985 88877665432 233456 7
Q ss_pred CCCcEEEEEEEEEeCCCCCceEEEEEeeEEEE
Q 012426 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (464)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vl 112 (464)
.-|-.|.|.|.++.=.+ +..|.+..|.-+
T Consensus 115 ~~~~yvkV~G~lk~F~G---K~~I~~~~i~~I 143 (258)
T COG5235 115 EEQNYVKVNGSLKTFNG---KRSISASHISAI 143 (258)
T ss_pred ccccEEEEecceeeeCC---eeEEehhheeec
Confidence 78889999999976543 356666554433
No 127
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=94.75 E-value=0.26 Score=42.78 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=56.3
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEE
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~ 91 (464)
.+++++++. ..+..|++.|.|.+.-..- - ...+|++|. |+|-++.+. +....++++|-|.+.|+
T Consensus 46 ~tV~~a~~~------~Ddt~V~L~G~Iv~~l~~d--~-Y~F~D~TG~--I~VeId~~~-----w~G~~v~p~d~V~I~Ge 109 (126)
T TIGR00156 46 MTVDFAKSM------HDGASVTLRGNIISHIGDD--R-YVFRDKSGE--INVVIPAAV-----WNGREVQPKDMVNISGS 109 (126)
T ss_pred EeHHHHhhC------CCCCEEEEEEEEEEEeCCc--e-EEEECCCCC--EEEEECHHH-----cCCCcCCCCCEEEEEEE
Confidence 456666553 5688999999996654432 2 448999984 999887542 22123899999999999
Q ss_pred EEeCCCCCceEEEEEeeEE
Q 012426 92 VVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 92 v~~~~~~~~~~el~~~~i~ 110 (464)
|-+.-. ..||.|.+|+
T Consensus 110 VDk~~~---~~~IdV~~I~ 125 (126)
T TIGR00156 110 LDKKSA---PAEVDVTHIQ 125 (126)
T ss_pred ECCCCC---CeEEEEEEEE
Confidence 985432 2688887765
No 128
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=94.57 E-value=0.25 Score=38.47 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=49.2
Q ss_pred EEEEEeeeec----CC-CeEEEEEEeCcCCcceEEEEeCCccchhhh-hcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 34 VAGWVRTLRA----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 34 v~GwV~~iR~----~g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
+.|.|.+++. .| .++|+.|.|++|. +.+++-.+ .|+.. .. +..|..|.|.|++.... +..++.+.
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~--~~~~~f~~--~~~~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~ 72 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGS--IEVVVFPE--TYEKYRDL--LKEDALLLVEGKVERRD---GGLRLIAE 72 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCe--EEEEECHH--HHHHHHHH--hcCCCEEEEEEEEEecC---CceEEEee
Confidence 5666655432 23 4899999999975 88887643 34333 34 99999999999997743 34788887
Q ss_pred eEEEEe
Q 012426 108 KIVLVG 113 (464)
Q Consensus 108 ~i~vls 113 (464)
++..+.
T Consensus 73 ~i~~~~ 78 (84)
T cd04485 73 RIEDLE 78 (84)
T ss_pred ccccHH
Confidence 665443
No 129
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=94.56 E-value=0.15 Score=45.02 Aligned_cols=82 Identities=16% Similarity=0.249 Sum_probs=47.5
Q ss_pred eecccccCCCCC-----CCCCCCCEEEEEEEEeeeecC-CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcE
Q 012426 12 LKIVDVKGGPNE-----GLDRVGLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS 85 (464)
Q Consensus 12 ~~i~~l~~~~~~-----~~~~~~~~V~v~GwV~~iR~~-g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~ 85 (464)
.+..+|.+.|.+ .....|+.|.|.|.|.+++.. ++-.++...+..+...++|.++.+......... |..||-
T Consensus 45 ~sa~~L~~~y~~N~~~A~~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--l~~G~~ 122 (144)
T PF12869_consen 45 VSAEELYKDYKDNEVAADKKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAK--LKKGQK 122 (144)
T ss_dssp EEHHHHHHHHHH-HHHHHHHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH----TTSE
T ss_pred ecHHHHHHHHHhCHHHHHhhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhc--CCCCCE
Confidence 444555554421 224579999999999999773 555677677755556799999876533333456 999999
Q ss_pred EEEEEEEEeC
Q 012426 86 IWIQGNVVPS 95 (464)
Q Consensus 86 V~V~G~v~~~ 95 (464)
|.|+|++..-
T Consensus 123 Vti~G~~~g~ 132 (144)
T PF12869_consen 123 VTIKGICTGY 132 (144)
T ss_dssp EEEEEE----
T ss_pred EEEEEEEEee
Confidence 9999998654
No 130
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=94.50 E-value=0.26 Score=52.19 Aligned_cols=78 Identities=17% Similarity=0.288 Sum_probs=59.3
Q ss_pred CCCCEEEEEEEEeeeecC----C-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCce
Q 012426 27 RVGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~----g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (464)
..++.|+|.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|++.+. +|..|.+|.|+|++.... +.
T Consensus 278 ~~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~--ie~vvFp~--~y~~~~~-~l~~~~~v~v~G~v~~~~---~~ 349 (449)
T PRK07373 278 KEKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQ--SEAVVFPK--SYERISE-LLQVDARLIIWGKVDRRD---DQ 349 (449)
T ss_pred cCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---Ce
Confidence 357889999999999864 2 4999999999985 99988754 3555443 499999999999997632 34
Q ss_pred EEEEEeeEEEE
Q 012426 102 VELKVNKIVLV 112 (464)
Q Consensus 102 ~el~~~~i~vl 112 (464)
+.+.+.++.-+
T Consensus 350 ~~liv~~i~~l 360 (449)
T PRK07373 350 VQLIVEDAEPI 360 (449)
T ss_pred EEEEEeEeecH
Confidence 67777766533
No 131
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.39 E-value=0.068 Score=58.10 Aligned_cols=117 Identities=17% Similarity=0.264 Sum_probs=78.6
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
...-..+|+.+.+.+|.-..+.||-||.||.|....- .|+-+
T Consensus 216 ~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~----------------------------------- 260 (589)
T COG0441 216 HPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWD----------------------------------- 260 (589)
T ss_pred CCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchh-----------------------------------
Confidence 3445689999999999999999999999999987532 12211
Q ss_pred ccCcccccccch--hHHHH---------HHhhc-------cCceEEEccccccCCCCCccc----cccchhccceeccCC
Q 012426 221 FFEKPAFLTVSG--QLNAE---------TYATA-------LSNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFAD 278 (464)
Q Consensus 221 ~f~~~~yL~~Sp--ql~lq---------ll~~g-------~~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~ 278 (464)
.|....|+..|. ++.++ +...+ --|++++|.|||.|.+ +.-| +-+|||=|.-. |+.
T Consensus 261 ~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~S-Gal~GL~RvR~ftqdDaHi-fc~ 338 (589)
T COG0441 261 NYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKS-GALHGLMRVRGFTQDDAHI-FCT 338 (589)
T ss_pred hccccceeeccCChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCc-chhhccccccceeecccce-ecc
Confidence 223333333332 22222 22111 1489999999999987 3444 46899988866 667
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012426 279 LKDDMACATAYLQYVVRYI 297 (464)
Q Consensus 279 ~~dlm~~~e~li~~i~~~~ 297 (464)
.+.+.+.+.+.+..+..-.
T Consensus 339 ~dQi~~E~~~~~~~i~~v~ 357 (589)
T COG0441 339 PDQIKDEFKGILELILEVY 357 (589)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888887777776664433
No 132
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=94.36 E-value=2 Score=41.49 Aligned_cols=208 Identities=18% Similarity=0.173 Sum_probs=106.5
Q ss_pred cccchhHHHHH-Hh-hcc---CceEEEcccccc-CCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcC
Q 012426 228 LTVSGQLNAET-YA-TAL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301 (464)
Q Consensus 228 L~~Spql~lql-l~-~g~---~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~ 301 (464)
.-.|---|+|. ++ -|| +..|.=.++-|. |++-+..|.-=--|-|||...-+-+..++.+.+.+..+...+...
T Consensus 69 vVhSLAKWKR~tL~r~~f~~~eGlythM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir~t- 147 (330)
T COG2502 69 VVHSLAKWKRHTLARYGFSAGEGLYTHMKALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIRET- 147 (330)
T ss_pred hhHHHHHHHHHHHHhcCCcCCCceeeechhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHHHH-
Confidence 34455567763 43 344 679999999997 554458888777788888877655555555555555555544321
Q ss_pred cccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeee--
Q 012426 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD-- 379 (464)
Q Consensus 302 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~-- 379 (464)
++.....+ .++..+. ..|+|-.+.++.... | . .=.+.-|..++..+ ..+|++.
T Consensus 148 --e~av~~~~-------~~~~~LP---~~ItFihseeL~~ry------P-~---L~~k~RE~ai~Ke~---gAvFligIG 202 (330)
T COG2502 148 --ELAVSAEF-------GLAPFLP---DQITFIHSQELVARY------P-D---LDPKGRERAIAKEL---GAVFLIGIG 202 (330)
T ss_pred --HHHHHHhc-------CCcccCc---cceEEeehHHHHHhC------C-C---CCcchhhHHHHHhh---CcEEEEecc
Confidence 11000000 0111111 234443333333221 1 0 01223455555443 3666654
Q ss_pred ------CCCCCc-ccccc---cCCCCCceeeEEEee------CCccccccCccccccHHHHHHHHHHcCC-CccchHHHH
Q 012426 380 ------YPKEIK-AFYMR---QNDDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELKL-NRDSYWWYL 442 (464)
Q Consensus 380 ------yP~~~~-pfy~~---~~~d~~~~~~fdl~~------~GigEi~~G~~r~~d~~~l~~r~~~~g~-~~~~~~~yl 442 (464)
+|...+ |=|.- +.+++-...+=|+++ .++ |+.+-+.|. |.+.|++++.-.|. |...++|.=
T Consensus 203 g~LsdG~~hd~RaPdYDdWtt~se~~~~gLNGDilvwn~~l~~af-ElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq 280 (330)
T COG2502 203 GKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQ 280 (330)
T ss_pred cccCCCCcCCCCCCCccccCCcccccccccCCcEEEechhccchh-eeecceeEe-cHHHHHHHHhccCchhhhcCHHHH
Confidence 344432 22210 011110112233333 466 887777775 45567777664443 444567766
Q ss_pred HHhhh------hh--h---HhhhhcCCCCCCC
Q 012426 443 DLRHY------GS--G---LVFILIKVTNFLN 463 (464)
Q Consensus 443 ~~~~~------G~--g---L~mll~~~~~I~~ 463 (464)
+++.- |. | |+|+|++...|-+
T Consensus 281 ~llng~lP~TIGGGIGQSRl~M~lL~k~HIGe 312 (330)
T COG2502 281 MLLNGELPQTIGGGIGQSRLCMLLLQKKHIGE 312 (330)
T ss_pred HHHcCCCCccccCcccHHHHHHHHhcccccce
Confidence 65532 22 3 9999999998865
No 133
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=94.01 E-value=1.1 Score=34.95 Aligned_cols=62 Identities=16% Similarity=0.325 Sum_probs=45.7
Q ss_pred CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecC
Q 012426 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 45 g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~ 115 (464)
+.++++.|.|++|. +.+++-.+.. ..... +..|..|.|.|++.... +..++.+.++..+...
T Consensus 18 ~~~~~~~l~D~tg~--i~~~~f~~~~--~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~~i~~l~~~ 79 (83)
T cd04492 18 KPYLALTLQDKTGE--IEAKLWDASE--EDEEK--FKPGDIVHVKGRVEEYR---GRLQLKIQRIRLVTEE 79 (83)
T ss_pred CcEEEEEEEcCCCe--EEEEEcCCCh--hhHhh--CCCCCEEEEEEEEEEeC---CceeEEEEEEEECCcc
Confidence 35899999999985 9998875432 12334 99999999999997632 2478888888766543
No 134
>PRK10053 hypothetical protein; Provisional
Probab=93.92 E-value=0.43 Score=41.72 Aligned_cols=80 Identities=11% Similarity=0.153 Sum_probs=56.0
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEE
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~ 91 (464)
+++++..+- ..+..|++.|.|.+.=.. =- ...+|++|. |+|-++.+. +....++++|-|.+.|+
T Consensus 50 ~tV~~a~~~------~Dd~~V~L~G~Iv~~lg~--d~-Y~F~D~tG~--I~VeID~~~-----w~G~~v~p~~kV~I~Ge 113 (130)
T PRK10053 50 MTVEQAKTM------HDGATVSLRGNLIDHKGD--DR-YVFRDKSGE--INVIIPAAV-----FDGREVQPDQMININGS 113 (130)
T ss_pred EEHHHhhcC------cCCCeEEEEEEEEEEeCC--ce-EEEECCCCc--EEEEeCHHH-----cCCCcCCCCCEEEEEEE
Confidence 356665553 568899999999544322 22 448999984 999888542 22123999999999999
Q ss_pred EEeCCCCCceEEEEEeeEE
Q 012426 92 VVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 92 v~~~~~~~~~~el~~~~i~ 110 (464)
|-+.-. ..||.|..|+
T Consensus 114 vDk~~~---~~~IdV~~i~ 129 (130)
T PRK10053 114 LDKKSA---PPVVRVTHLQ 129 (130)
T ss_pred ECCCCC---CeEEEEEEEe
Confidence 987532 3688887775
No 135
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=93.78 E-value=0.2 Score=54.61 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--CCC---C--CCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC--EGA---G--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--eg~---~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
.....++.+.+|++|...||.|+-|..+++... +.. . +. +.-.|| .+
T Consensus 358 ~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~--i~l~NP----------------------ls-- 411 (552)
T PRK09616 358 LHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDY--VEVLNP----------------------IS-- 411 (552)
T ss_pred CChHHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCe--EEEcCC----------------------Cc--
Confidence 344566788899999999999999999988621 111 0 11 211232 01
Q ss_pred ccCcccccccchhHHH-HHHh---hcc--CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHH
Q 012426 221 FFEKPAFLTVSGQLNA-ETYA---TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 292 (464)
Q Consensus 221 ~f~~~~yL~~Spql~l-qll~---~g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~ 292 (464)
..-.+|++|-=--| +.+. .+. -|+||||+||+++.. +..|..|++++-+-++.. |+.++-..+|.++..
T Consensus 412 --~e~svLRtsLlpgLL~~~~~N~~~~~~~~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 412 --EDYTVVRTSLLPSLLEFLSNNKHREYPQKIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred --cchheEeccchHHHHHHHHhccCCCCCeeEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 11124555532222 3332 222 379999999998764 245778999999888774 789998888888854
No 136
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=93.37 E-value=0.35 Score=56.42 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=60.9
Q ss_pred CCCEEEEEEEEeeeecC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEE
Q 012426 28 VGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el 104 (464)
.++.|+|+|.|..++.. ++++|+.|.|.+|. +.+++-++ .|++.+. +|..|.++.|+|++.... +.+.+
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~--~e~~ifp~--~~~~~~~-~l~~~~~~~v~g~v~~~~---~~~~~ 1023 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGM--VNVVVWPG--LWERQRR-EALGARLLLVRGRVQNAE---GVRHL 1023 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeEEE
Confidence 56789999999988663 34999999999985 99998764 3555442 499999999999998642 34788
Q ss_pred EEeeEEEEec
Q 012426 105 KVNKIVLVGK 114 (464)
Q Consensus 105 ~~~~i~vls~ 114 (464)
.++++.-+..
T Consensus 1024 ~~~~i~~~~~ 1033 (1046)
T PRK05672 1024 VADRLEDLSP 1033 (1046)
T ss_pred EEeeeechHH
Confidence 8888765544
No 137
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=92.90 E-value=0.45 Score=56.02 Aligned_cols=77 Identities=9% Similarity=0.215 Sum_probs=58.9
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
.++.|+|.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|++.+. +|..|.+|.|+|++.... +.+
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~--~e~vvFp~--~y~~~~~-~l~~~~~~~v~g~v~~~~---~~~ 1070 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGS--CEAVVFPK--SYERLSD-HLMTDTRLLVWAKVDRRD---DRV 1070 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 57889999999998764 2 4999999999985 99988754 3555443 499999999999997642 336
Q ss_pred EEEEeeEEEE
Q 012426 103 ELKVNKIVLV 112 (464)
Q Consensus 103 el~~~~i~vl 112 (464)
.+.++++.-+
T Consensus 1071 ~~~~~~i~~l 1080 (1170)
T PRK07374 1071 QLIIDDCREI 1080 (1170)
T ss_pred EEEEeeeecH
Confidence 7777766544
No 138
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=92.58 E-value=0.53 Score=55.41 Aligned_cols=79 Identities=15% Similarity=0.321 Sum_probs=59.8
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
.++.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. +|..|.+|.|+|++..... +.+
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~--~e~~vfp~--~~~~~~~-~l~~~~~~~v~g~v~~~~~--~~~ 1062 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGT--VEVIVFPK--VYEKYRS-LLNEDNIVLIKGRVSLRED--EEP 1062 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecCC--Cce
Confidence 47789999999998763 3 4999999999985 99998764 3555432 4999999999999975432 236
Q ss_pred EEEEeeEEEEe
Q 012426 103 ELKVNKIVLVG 113 (464)
Q Consensus 103 el~~~~i~vls 113 (464)
.+.+.++.-+.
T Consensus 1063 ~~~~~~~~~l~ 1073 (1151)
T PRK06826 1063 KLICEEIEPLV 1073 (1151)
T ss_pred EEEEeeeecHh
Confidence 78887775544
No 139
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=92.38 E-value=0.92 Score=41.92 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=56.5
Q ss_pred CCCCCEEEEEEEEeeeec--CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcC--CCCCCcEEEEEEEEEeCCCCCce
Q 012426 26 DRVGLMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSG--LITTGASIWIQGNVVPSQGSKQK 101 (464)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~--~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~--~l~~g~~V~V~G~v~~~~~~~~~ 101 (464)
-.+.+.|+|.|-|.+.+. .+++.++.|.|++| +|-+++..+....-.++.+ .+..|++|.|+|.+..=+..
T Consensus 48 G~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtG--ti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yrG~--- 122 (204)
T COG4085 48 GRLNEEVTVKGEVTADQNAIGGGIESLVLNDGTG--TITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYRGS--- 122 (204)
T ss_pred ceeeccceeeeEEEeeecccccceEEEEEECCCC--cEEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEeCCC---
Confidence 356788999999999984 47899999999998 5998888765322111111 26699999999999876643
Q ss_pred EEEEEe
Q 012426 102 VELKVN 107 (464)
Q Consensus 102 ~el~~~ 107 (464)
.|+.+.
T Consensus 123 ~eVkvn 128 (204)
T COG4085 123 SEVKVN 128 (204)
T ss_pred ceeecc
Confidence 466654
No 140
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=92.36 E-value=0.61 Score=39.40 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=39.0
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCC
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
..|+.|+|-|+|.+....|+.+-+.-.|+. .++|.++... . +..+.+|.|.|+|....
T Consensus 16 ~~gk~VrivGkv~~~~~~g~~~~l~~~d~~---~V~v~l~~~~-------~--~~~~~~vEviG~V~~~~ 73 (109)
T PF08661_consen 16 FVGKTVRIVGKVESVDPDGGSATLSTSDGG---QVTVSLNPPS-------D--EELSKYVEVIGKVNDDG 73 (109)
T ss_dssp GTTSEEEEEEEEEEE-TTSSEEEEE-TTS----EEEEEESS---------S--S---SEEEEEEEE-TTS
T ss_pred hCCCeEEEEEEEeeEcCCCCEEEEEcCCCC---EEEEEeCCCC-------C--CCCCCEEEEEEEEcCCC
Confidence 689999999999999977766555545653 5888877542 2 66799999999997654
No 141
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=91.98 E-value=0.58 Score=55.12 Aligned_cols=79 Identities=16% Similarity=0.335 Sum_probs=60.2
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
.++.|++.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|++.+. .|..|++|.|+|++.... +.+
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~--iEvviFp~--~ye~~~~-~L~~g~iV~V~GkVe~~~---~~~ 1047 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGR--IEVMLFSE--ALEKYRD-LLEEDRIVVVKGQVSFDD---GGL 1047 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 47889999999998774 3 4999999999985 99998764 3555432 399999999999997632 347
Q ss_pred EEEEeeEEEEec
Q 012426 103 ELKVNKIVLVGK 114 (464)
Q Consensus 103 el~~~~i~vls~ 114 (464)
.+.++++.-+.+
T Consensus 1048 qlii~~I~~L~~ 1059 (1135)
T PRK05673 1048 RLTAREVMDLEE 1059 (1135)
T ss_pred EEEEeecccHHH
Confidence 778877755543
No 142
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=91.81 E-value=1.8 Score=36.14 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=50.0
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEE
Q 012426 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (464)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~ 105 (464)
...|+.|++-|+|.+.+.. . +.+.+..| ..++|.++... . +..+-+|.|.|+|... .+|.
T Consensus 12 ~f~gk~V~ivGkV~~~~~~---~-~~~~~~Dg-~~v~v~l~~~~-------~--~~~~~~vEViG~V~~~------~~I~ 71 (101)
T cd04479 12 QFVGKTVRIVGKVEKVDGD---S-LTLISSDG-VNVTVELNRPL-------D--LPISGYVEVIGKVSPD------LTIR 71 (101)
T ss_pred hhCCCEEEEEEEEEEecCC---e-EEEEcCCC-CEEEEEeCCCC-------C--cccCCEEEEEEEECCC------CeEE
Confidence 3789999999999999865 2 44555544 36999988642 3 7888999999999642 4666
Q ss_pred EeeEEEEec
Q 012426 106 VNKIVLVGK 114 (464)
Q Consensus 106 ~~~i~vls~ 114 (464)
+....-++.
T Consensus 72 ~~~~~~~g~ 80 (101)
T cd04479 72 VLSYIDFGD 80 (101)
T ss_pred EEEEEECCC
Confidence 766555554
No 143
>PRK15491 replication factor A; Provisional
Probab=91.76 E-value=1.2 Score=46.10 Aligned_cols=92 Identities=22% Similarity=0.286 Sum_probs=65.4
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeee-------ecC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCC
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL-------RAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~i-------R~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~ 81 (464)
.+|++|... .+.|+|.|||.++ |+. |++.=+.|-|.|| .|++++-.+... .+..+.|.
T Consensus 58 ~kI~dL~~~--------~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG--~ir~tlW~~~a~--~~~~~~le 125 (374)
T PRK15491 58 TKIADINES--------SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETG--SIRLTLWDDLAD--LIKTGDIE 125 (374)
T ss_pred ccHHHCCCC--------CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCC--eEEEEEECchhh--hhccCCcC
Confidence 456666542 3679999999877 222 4677789999998 499999875421 12213499
Q ss_pred CCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCC
Q 012426 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (464)
Q Consensus 82 ~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~ 118 (464)
.|++|.|.|.+...- +++||.+.+-..+.++...
T Consensus 126 ~G~v~~I~~~~~~~y---~g~Ei~i~~~~~i~~~~~~ 159 (374)
T PRK15491 126 VGKSLNISGYAKEGY---SGIEVNIGRYGGISESDEN 159 (374)
T ss_pred CCCEEEEeeeeccCc---ccEEEEeCCCceeeecccc
Confidence 999999999754433 2389999988888888644
No 144
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=91.75 E-value=2.9 Score=36.62 Aligned_cols=85 Identities=21% Similarity=0.400 Sum_probs=52.0
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEe--eeec---CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEE
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRA---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~--~iR~---~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V 86 (464)
.+..++.... ...++.|+|.|+|. ++.. ...+.|. |.|+. ..+.|+.....++ +...|.-|
T Consensus 37 ~t~se~~~~~----~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~-i~D~~--~~i~V~Y~G~~Pd-------~F~eg~~V 102 (131)
T PF03100_consen 37 LTPSELAAEP----QKVGRKVRVGGLVVEGSVEYDPDGNTLTFT-ITDGG--KEIPVVYTGPLPD-------LFREGQGV 102 (131)
T ss_dssp E-TTTTTTTS----T-TTSEEEEEEEEECTTEEE-TTSSEEEEE-EE-SS---EEEEEEES--CT-------T--TTSEE
T ss_pred cCHHHHhhcc----ccCCceEEEeeEEccCCEEEcCCCCEEEEE-EEECC--cEEEEEECCCCCc-------cccCCCeE
Confidence 4456665541 24799999999998 6644 3567776 78885 4699998865432 37889999
Q ss_pred EEEEEEEeCCCCCceEEEEEeeEEEEecCCCC
Q 012426 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (464)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~ 118 (464)
.|+|+... .+ ..+++ +||.||+..
T Consensus 103 Vv~G~~~~--~g----~F~A~--~lL~Kcpsk 126 (131)
T PF03100_consen 103 VVEGRLGE--DG----VFEAT--ELLAKCPSK 126 (131)
T ss_dssp EEEEEECC--TS----EEEEE--EEEETS---
T ss_pred EEEEEECC--CC----EEEEE--EEEeCCCCC
Confidence 99999822 11 34454 788888644
No 145
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=91.49 E-value=0.86 Score=53.44 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=58.4
Q ss_pred CCCEEEEEEEEeeeecC-----CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 28 VGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~-----g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
.++.|+|+|.|.++|.. +.++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++.... +..
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~--~e~~vFp~--~y~~~~~-~l~~~~~~~v~G~v~~~~---~~~ 1013 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDE--MEAVVFPE--TYIHFSD-KLQEGAIVLVDGTIELRN---HKL 1013 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CcE
Confidence 46789999999998653 25999999999985 99988754 3555432 499999999999997642 336
Q ss_pred EEEEeeEEEE
Q 012426 103 ELKVNKIVLV 112 (464)
Q Consensus 103 el~~~~i~vl 112 (464)
.+.++++.-+
T Consensus 1014 ~~~~~~i~~l 1023 (1107)
T PRK06920 1014 QWIVNGLYPL 1023 (1107)
T ss_pred EEEEeecccH
Confidence 7777766544
No 146
>PRK14699 replication factor A; Provisional
Probab=91.45 E-value=1.4 Score=47.15 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=61.7
Q ss_pred CCEEEEEEEEeeee-------cC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCC
Q 012426 29 GLMIVVAGWVRTLR-------AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (464)
Q Consensus 29 ~~~V~v~GwV~~iR-------~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~ 98 (464)
++.|++.|+|.++- .. |+++=+.|.|.||. |.+++..+.. +.+..+.|..||+|.|.|.++.-.
T Consensus 67 ~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~--ir~tlW~~~a--~~~~~g~l~~GDvv~I~~~~r~~~-- 140 (484)
T PRK14699 67 SGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGK--IKLTLWDNMA--DLIKAGKIKAGQTLQISGYAKQGY-- 140 (484)
T ss_pred CceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCe--EEEEEecCcc--chhhhcCCCCCCEEEEcceeccCC--
Confidence 47899999998883 33 46777789999984 9999987542 113323399999999999753323
Q ss_pred CceEEEEEeeEEEEecCCCCCCCC
Q 012426 99 KQKVELKVNKIVLVGKSDPSYPIQ 122 (464)
Q Consensus 99 ~~~~el~~~~i~vls~~~~~~P~~ 122 (464)
++.||.+.+..++.++....+.+
T Consensus 141 -~g~el~~~~~~~i~~~~~~i~v~ 163 (484)
T PRK14699 141 -SGVEVNIGNNGVLTESEEEIDVA 163 (484)
T ss_pred -CCceEEeCCCceeeccCcccccC
Confidence 33799988877887765445543
No 147
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=90.85 E-value=0.8 Score=42.84 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhCCcEEEeCceEeec
Q 012426 153 ALAYATHKFFQENGFIWISSPIITAS 178 (464)
Q Consensus 153 ~i~~~~r~ff~~~gF~EV~TP~L~~~ 178 (464)
.+.+.+|++|...||.||-|..+++.
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~ 29 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSP 29 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCH
Confidence 45677899999999999999999876
No 148
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=89.30 E-value=1.6 Score=50.69 Aligned_cols=74 Identities=14% Similarity=0.320 Sum_probs=55.2
Q ss_pred CCEEEEEEEEeeeecC------CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 29 GLMIVVAGWVRTLRAQ------SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~------g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
++.+.+.|+|.++|.. +.++|+.|.|.+|. +.+++-++ .|++.+. .|..|.+|.|+|++.... +.+
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~--ie~~vFp~--~y~~~~~-~l~~~~~~~v~G~v~~~~---~~~ 955 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKK--LDVTLFPE--TYRQYKD-ELKEGKFYYLKGKIQERD---GRL 955 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---Cee
Confidence 4668899999876632 24999999999985 99998764 3555432 399999999999997642 346
Q ss_pred EEEEeeEE
Q 012426 103 ELKVNKIV 110 (464)
Q Consensus 103 el~~~~i~ 110 (464)
.+.++++.
T Consensus 956 ~l~~~~i~ 963 (1034)
T PRK07279 956 QMVLQQIQ 963 (1034)
T ss_pred EEEEeeee
Confidence 77777664
No 149
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=88.95 E-value=4.2 Score=35.44 Aligned_cols=84 Identities=21% Similarity=0.171 Sum_probs=56.9
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeec-------C--CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCC
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~-------~--g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~ 81 (464)
..+|+||... .+.|.+-|.|.++-. . +.+.-+.|.|.||. |.+.+..+. +.. +.
T Consensus 4 ~~kI~dL~~g--------~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~--I~~tlW~~~-----a~~--l~ 66 (129)
T PRK06461 4 ITKIKDLKPG--------MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGR--VKLTLWGEQ-----AGS--LK 66 (129)
T ss_pred ceEHHHcCCC--------CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCE--EEEEEeCCc-----ccc--CC
Confidence 3567777642 257888899985421 2 23667889999984 898887642 234 89
Q ss_pred CCcEEEEE-EEEEeCCCCCceEEEEEee---EEEEec
Q 012426 82 TGASIWIQ-GNVVPSQGSKQKVELKVNK---IVLVGK 114 (464)
Q Consensus 82 ~g~~V~V~-G~v~~~~~~~~~~el~~~~---i~vls~ 114 (464)
.||+|.|. |.+..- . +.++|.+.+ |..+.+
T Consensus 67 ~GdvV~I~na~v~~f-~--G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 67 EGEVVEIENAWTTLY-R--GKVQLNVGKYGSISESDD 100 (129)
T ss_pred CCCEEEEECcEEeee-C--CEEEEEECCCEEEEECCc
Confidence 99999999 555443 2 348899884 555554
No 150
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=88.37 E-value=11 Score=29.97 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=46.0
Q ss_pred EEEEEEEeee--ec--CCC-eEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCC-CCcEEEEEEEEEeCCCCCceEEEE
Q 012426 32 IVVAGWVRTL--RA--QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQGNVVPSQGSKQKVELK 105 (464)
Q Consensus 32 V~v~GwV~~i--R~--~g~-~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~-~g~~V~V~G~v~~~~~~~~~~el~ 105 (464)
|+|.|-|-.+ |. .|+ +.-+.|.|.+.. |-|..=.+ ...+.+.. |. .|++|.|.|.+.-..=. +++.+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~S--i~~K~F~~-~~~~~~~~--ik~~G~~v~v~G~v~~D~f~-~e~~~~ 75 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSS--ITVKKFLR-KDEKDKEE--LKSKGDWVRVRGKVQYDTFS-KELVLM 75 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCC--EEEEEecc-CChhHHhh--cccCCCEEEEEEEEEEccCC-CceEEE
Confidence 7889998765 33 244 445889998864 55432221 11223456 89 99999999999765422 346666
Q ss_pred EeeEE
Q 012426 106 VNKIV 110 (464)
Q Consensus 106 ~~~i~ 110 (464)
+..+.
T Consensus 76 i~~i~ 80 (82)
T cd04484 76 INDIE 80 (82)
T ss_pred eeeEE
Confidence 66554
No 151
>PRK07217 replication factor A; Reviewed
Probab=87.95 E-value=7.8 Score=38.86 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=63.7
Q ss_pred CCCEEEEEEEEeee--ecCCCeEE-EEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEE
Q 012426 28 VGLMIVVAGWVRTL--RAQSSVTF-IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (464)
Q Consensus 28 ~~~~V~v~GwV~~i--R~~g~~~F-i~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el 104 (464)
.++.|+|.|+|..+ +.++++.. -.|-|.||. |..++..+.. ... |..|++|.+.+..+..-.+ .++|
T Consensus 81 ~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG~--IkfT~W~~s~----~~~--leeGd~~rI~na~v~ey~G--~~~l 150 (311)
T PRK07217 81 PEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETGT--IKFTKWAKSD----LPE--LEEGKSYLLKNVVTDEYQG--RFSV 150 (311)
T ss_pred CCCcEEEEEEEEEecCCCCCceEEEEEEEcCCce--EEEEEccCCC----CCc--ccCCCEEEEEeEEEeeECC--EEEE
Confidence 46789999999887 44567777 679999974 8888776421 223 9999999999998876654 3899
Q ss_pred EEeeEEEEecCCCCCCC
Q 012426 105 KVNKIVLVGKSDPSYPI 121 (464)
Q Consensus 105 ~~~~i~vls~~~~~~P~ 121 (464)
.+.+...+.+.+.+.++
T Consensus 151 nlg~~t~I~~~de~IeV 167 (311)
T PRK07217 151 KLNRTTSIEELDEDIEV 167 (311)
T ss_pred EeCCceEEEeCCCCccc
Confidence 99988888886655554
No 152
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=87.33 E-value=4.3 Score=40.98 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=54.7
Q ss_pred CCEEEEEEEEeeeec----CC-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEE
Q 012426 29 GLMIVVAGWVRTLRA----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~----~g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~e 103 (464)
|+.|..-.-|.++.. .| ....+.|+|.||. |.+.+...... .... +..|++|.|.|.+..-+. .+.
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~--I~ak~W~~~~~--~~~~--~~~g~vv~v~G~v~~y~g---~~Q 81 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGD--IEAKLWDVSPE--DEAT--YVPETIVHVKGDIINYRG---RKQ 81 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcE--EEEEeCCCChh--hHhh--cCCCCEEEEEEEEEEECC---cce
Confidence 445555555554432 24 3777889999984 99988754321 2345 999999999999987653 367
Q ss_pred EEEeeEEEEecCC
Q 012426 104 LKVNKIVLVGKSD 116 (464)
Q Consensus 104 l~~~~i~vls~~~ 116 (464)
+.+..+..+.+..
T Consensus 82 l~i~~i~~~~~~e 94 (314)
T PRK13480 82 LKVNQIRLATEED 94 (314)
T ss_pred EEEEEeEECCCCC
Confidence 8888898887753
No 153
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=87.00 E-value=6 Score=31.22 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=39.8
Q ss_pred CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE-EEEEeCCCCCceEEEEEeeEE
Q 012426 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 45 g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~-G~v~~~~~~~~~~el~~~~i~ 110 (464)
+++.=+.|.|.+| .|.+++-.... ... +..|++|.+. |++..-+ +.++|.+.+..
T Consensus 22 ~~~~~~~l~D~TG--~i~~~~W~~~~----~~~--~~~G~vv~i~~~~v~~~~---g~~ql~i~~~~ 77 (82)
T cd04491 22 GKVQSGLVGDETG--TIRFTLWDEKA----ADD--LEPGDVVRIENAYVREFN---GRLELSVGKNS 77 (82)
T ss_pred eEEEEEEEECCCC--EEEEEEECchh----ccc--CCCCCEEEEEeEEEEecC---CcEEEEeCCce
Confidence 5677788999997 49998876532 234 9999999999 7776543 34788776543
No 154
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=86.12 E-value=4.2 Score=39.06 Aligned_cols=125 Identities=12% Similarity=0.071 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhh-----CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-cccCcc
Q 012426 152 NALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFFEKP 225 (464)
Q Consensus 152 s~i~~~~r~ff~~-----~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~ 225 (464)
.+.+..++++|.. .+.+.|..|+++...++=+.++=-+.. || .++. +.-+..
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~Er-----------pV-----------sF~~k~~~~~~ 64 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVER-----------PV-----------SFDIKDIPDET 64 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST--------------------------EE--TTSTT--
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEe-----------eE-----------EEEccCCCCce
Confidence 4556777777754 699999999999875542221100000 00 0000 111334
Q ss_pred cccccchhHHHHHHhh--cc---CceEEEccccc-cCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHh
Q 012426 226 AFLTVSGQLNAETYAT--AL---SNVYTFGPTFR-AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 298 (464)
Q Consensus 226 ~yL~~Spql~lqll~~--g~---~rVfeI~~~FR-~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~ 298 (464)
+-.-+|=--|+|+... +| +.+|+=..+.| .|+.-+..|.-=.-|-|||+....-+.-++.+.+.++.+...+.
T Consensus 65 ~EIVhSLAKWKR~aL~~y~f~~geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~aik 143 (244)
T PF03590_consen 65 AEIVHSLAKWKRMALKRYGFPPGEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAIK 143 (244)
T ss_dssp EEE-S--TTHHHHHHHHTT--TT-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHHH
T ss_pred eeeehhHHHHHHHHHHHcCCCCCceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHHH
Confidence 4456677778886543 55 58999999999 87643589999999999999987555556666666666666554
No 155
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=86.00 E-value=10 Score=28.46 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=38.1
Q ss_pred EEEEEeeeec----CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCC
Q 012426 34 VAGWVRTLRA----QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 34 v~GwV~~iR~----~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
+.|.|.+++. .++..-+.+.|++|. +.+++=... .+. .+. +..|+.+.|.|++....
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~--i~~~~F~~~-~~~-~~~--~~~G~~~~v~Gkv~~~~ 62 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGT--LTLVFFNFQ-PYL-KKQ--LPPGTRVRVSGKVKRFR 62 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCE--EEEEEECCC-HHH-Hhc--CCCCCEEEEEEEEeecC
Confidence 5566655432 135677789999874 888775421 111 245 99999999999998754
No 156
>KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair]
Probab=85.70 E-value=5.6 Score=39.08 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=55.9
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc-hhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEee
Q 012426 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (464)
Q Consensus 30 ~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~ 108 (464)
..|++-|||.++-....-++++|-|++|. |=+........ -.+... |..|-.|.|.|.++.-.++ .+|.+.+
T Consensus 69 ~~v~~VGivr~~e~~~t~i~y~I~D~tg~--id~r~W~~~~~~~~e~~~--l~~~~yVkv~G~Lk~f~Gk---~sl~~fk 141 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATNITYEIEDGTGQ--IDVRQWFHDNAESEEMPA--LETGTYVKVYGHLKPFQGK---KSLQVFK 141 (265)
T ss_pred EEEEEEEEEEeceecCcceEEEEecCccc--EEEEEeccccchhhhCcc--cccCcEEEeeecccCCCCc---eeEEEEe
Confidence 46899999999999988889999999985 66655443211 122446 9999999999999765533 5777776
Q ss_pred EEEE
Q 012426 109 IVLV 112 (464)
Q Consensus 109 i~vl 112 (464)
|.-+
T Consensus 142 I~pv 145 (265)
T KOG3108|consen 142 IRPV 145 (265)
T ss_pred eeee
Confidence 6543
No 157
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=85.47 E-value=1.9 Score=44.65 Aligned_cols=99 Identities=19% Similarity=0.188 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---C-C---CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G---AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---e-g---~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (464)
-.+.+..|.+.+++.|..+||..|+||+|...++ + | -.+.|++++..
T Consensus 16 e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~-------------------------- 69 (390)
T COG3705 16 EARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDET-------------------------- 69 (390)
T ss_pred HHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCC--------------------------
Confidence 4567788889999999999999999999998654 1 1 13567664321
Q ss_pred cccCcccccccchhHHH---H----HHhhccCceEEEccccccCCCCCccccccchhccceeccC
Q 012426 220 DFFEKPAFLTVSGQLNA---E----TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (464)
Q Consensus 220 ~~f~~~~yL~~Spql~l---q----ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 277 (464)
++.+-|+ |++=. + .+...-.|+...|++||+.+.. ..-..||+|+=+|.=+.
T Consensus 70 ---g~~l~LR--pD~T~pVaR~~~~~~~~~P~Rl~Y~G~Vfr~~~~~-~g~~~Ef~QaGiEllG~ 128 (390)
T COG3705 70 ---GGRLGLR--PDFTIPVARIHATLLAGTPLRLSYAGKVFRAREGR-HGRRAEFLQAGIELLGD 128 (390)
T ss_pred ---CCeEEec--ccccHHHHHHHHHhcCCCCceeeecchhhhcchhc-cCcccchhhhhhHHhCC
Confidence 2222232 22222 2 2233467999999999998332 33345999999987554
No 158
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=85.11 E-value=4.4 Score=42.55 Aligned_cols=76 Identities=11% Similarity=0.215 Sum_probs=57.9
Q ss_pred CCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCccchhhh-hcCCCCCCcEEEEEEEEEeCCCCCceEEEEE
Q 012426 29 GLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~ 106 (464)
=..|+|.|-|.+++.+. +-.|+.|.|... .|+|++-+.... .+ -. +..|+-|.|.|++.-=+.. +.+.|.+
T Consensus 23 ~~~V~v~GEISn~t~~~sgH~YFtLKD~~A--~i~c~mf~~~~~--~l~f~--p~eG~~V~v~G~is~Y~~r-G~YQi~~ 95 (440)
T COG1570 23 LGQVWVRGEISNFTRPASGHLYFTLKDERA--QIRCVMFKGNNR--RLKFR--PEEGMQVLVRGKISLYEPR-GDYQIVA 95 (440)
T ss_pred CCeEEEEEEecCCccCCCccEEEEEccCCc--eEEEEEEcCccc--ccCCC--ccCCCEEEEEEEEEEEcCC-CceEEEE
Confidence 36799999999998763 389999999985 599998765421 11 13 8899999999999865433 3488888
Q ss_pred eeEEE
Q 012426 107 NKIVL 111 (464)
Q Consensus 107 ~~i~v 111 (464)
++++-
T Consensus 96 ~~~~p 100 (440)
T COG1570 96 ESMEP 100 (440)
T ss_pred ecCCc
Confidence 88764
No 159
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.98 E-value=2.1 Score=44.38 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=69.5
Q ss_pred hhhhHHHHHHHHHHHHhhhCCcEEEeCceEee------cCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 012426 146 AVARVRNALAYATHKFFQENGFIWISSPIITA------SDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (464)
Q Consensus 146 ~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~------~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (464)
+-+.+|..|++.+.+.|..+|...|+||++.- -.+|...-.+.+.+- .|
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQ-------------------GG------ 126 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQ-------------------GG------ 126 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhc-------------------CC------
Confidence 34789999999999999999999999998653 233322111111100 00
Q ss_pred cccCcccccccchhHHHHHHhh-cc--CceEEEccccccCCC-CCccccccchhccceecc-CC----HHHHHHHHHHHH
Q 012426 220 DFFEKPAFLTVSGQLNAETYAT-AL--SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAF-AD----LKDDMACATAYL 290 (464)
Q Consensus 220 ~~f~~~~yL~~Spql~lqll~~-g~--~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~-~~----~~dlm~~~e~li 290 (464)
......+-|+++=- |.++. .. =+-|.|+++||.+.. -|.--.-||+|+|+-.|+ .+ --+++..+-+++
T Consensus 127 El~SLRYDLTVPfA---RylAmNki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L 203 (518)
T KOG1936|consen 127 ELCSLRYDLTVPFA---RYLAMNKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEIL 203 (518)
T ss_pred cEEEeecccccHHH---HHHHHcccccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHH
Confidence 11112233554422 43332 22 245999999998753 233345699999998887 22 244555555554
No 160
>PRK02801 primosomal replication protein N; Provisional
Probab=83.89 E-value=14 Score=30.63 Aligned_cols=48 Identities=25% Similarity=0.415 Sum_probs=33.0
Q ss_pred eEEEEeCCccchhhh-hcCCCCCCcEEEEEEEEEe--CCCCCceEEEEEeeEEEE
Q 012426 61 MQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVP--SQGSKQKVELKVNKIVLV 112 (464)
Q Consensus 61 iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~--~~~~~~~~el~~~~i~vl 112 (464)
|+|++-.+.. +.+ +. |..|+-|.|+|.+.. ++.+...+.|+++.++.+
T Consensus 50 i~~va~G~~A--e~~~~~--l~kGs~v~V~G~L~~~~~~~g~~~~~v~~~~i~~l 100 (101)
T PRK02801 50 MPVIVSGNQF--QAITQS--ITVGSKITVQGFISCHQGRNGLSKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEcHHH--HHHHhh--cCCCCEEEEEEEEEEeECCCCCEEEEEEEEEEEEC
Confidence 6777665321 222 35 999999999999985 344434467888888765
No 161
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=82.99 E-value=2.2 Score=49.74 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEee-cCCC-CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITA-SDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~-~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (464)
.-.+|+.+...+-+.|..+|++|++||-+.. ++|- +..++-.+-++ . ++--..
T Consensus 931 ~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~-------------------s------G~~v~L 985 (1351)
T KOG1035|consen 931 NNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDH-------------------S------GDVVEL 985 (1351)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeecC-------------------C------CCEEEe
Confidence 3467888888999999999999999996654 3331 12222111111 1 111122
Q ss_pred ccccccchhHHHHHHhh---ccCceEEEccccccCCCCCccccccchhccceeccCC----HHHHHHHHHHHHHH
Q 012426 225 PAFLTVSGQLNAETYAT---ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQY 292 (464)
Q Consensus 225 ~~yL~~Spql~lqll~~---g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~----~~dlm~~~e~li~~ 292 (464)
|+-|++- +-+.++. -.-|-|+|++|||.+.. + |..|++.+++-....+ --+++.++-+++..
T Consensus 986 p~DLr~p---far~vs~N~~~~~Kry~i~rVyr~~~~--~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~ 1054 (1351)
T KOG1035|consen 986 PYDLRLP---FARYVSRNSVLSFKRYCISRVYRPAIH--N-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTE 1054 (1351)
T ss_pred eccccch---HHHHhhhchHHHHHHhhhheeeccccc--C-CCccccceeeeEecCCCCccHHHHHHHHHHHHHH
Confidence 3333321 1122221 24577999999999983 4 9999999998766543 24455555555544
No 162
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=82.52 E-value=8.6 Score=32.04 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=47.8
Q ss_pred CEEEEEEEEee---eec------CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEE-EEeCCCC-
Q 012426 30 LMIVVAGWVRT---LRA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN-VVPSQGS- 98 (464)
Q Consensus 30 ~~V~v~GwV~~---iR~------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~-v~~~~~~- 98 (464)
..++|+|||.+ +|. .|++.-++|.|..| ..|++.+-.+.. +... .+|..|+++.+.|- |.+....
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~-~~I~~t~~~~~~--~~f~-~~l~eG~vy~i~~~~V~~a~~~y 85 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDG-GEIRATFFNDAV--DKFY-DLLEVGKVYYISKGSVKVANKKF 85 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCC-CEEEEEEehHHH--HHhh-cccccccEEEEeccEEeeccccC
Confidence 46899999974 332 26788899999954 369999886431 1121 13999999999774 4443221
Q ss_pred ---CceEEEEEe
Q 012426 99 ---KQKVELKVN 107 (464)
Q Consensus 99 ---~~~~el~~~ 107 (464)
...+||...
T Consensus 86 ~~~~~~yeI~f~ 97 (104)
T cd04474 86 NTLKNDYEITFN 97 (104)
T ss_pred CCCCCcEEEEEC
Confidence 234666554
No 163
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=82.43 E-value=11 Score=42.23 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=52.1
Q ss_pred CCCCEEEEEEEEeeeecC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEE
Q 012426 27 RVGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~e 103 (464)
..|+.|+|.|.|.+.+.. +++.-+.+.|++|. +++++=.-...|- .+. +.+|+.+.|.|++.... +.++
T Consensus 57 ~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~--i~l~~F~~n~~~~-~~~--l~~G~~~~v~Gkv~~~~---~~~q 128 (681)
T PRK10917 57 RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGN--LTLRFFNFNQPYL-KKQ--LKVGKRVAVYGKVKRGK---YGLE 128 (681)
T ss_pred CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeE--EEEEEEccCcHHH-Hhh--CCCCCEEEEEEEEEecC---CeEE
Confidence 458899999999887533 35677889999974 8887652111121 244 99999999999998732 2255
Q ss_pred EEEeeEEE
Q 012426 104 LKVNKIVL 111 (464)
Q Consensus 104 l~~~~i~v 111 (464)
+.--++.+
T Consensus 129 m~~P~~~~ 136 (681)
T PRK10917 129 MVHPEYEV 136 (681)
T ss_pred EEcCEEEe
Confidence 54444443
No 164
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=82.12 E-value=8.8 Score=40.54 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=59.9
Q ss_pred CCEEEEEEEEeeeecC-CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~-g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
-..|+|.|=|.+.+.+ ++-+|+.|.|... .|-||+-+... ..+. -.+..|+-|.|.|.+.--+.. +.+.|.+.
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a--~i~~~~~~~~~--~~~~-~~~~~G~~v~v~g~~~~y~~~-g~~ql~v~ 96 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEIA--QIRCVMFKGSA--RRLK-FKPEEGMKVLVRGKVSLYEPR-GDYQLIVE 96 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCCc--EEEEEEEcChh--hcCC-CCCCCCCEEEEEEEEEEECCC-CCEEEEEE
Confidence 5789999999999876 6689999999974 59999987531 1121 128999999999999853322 34999999
Q ss_pred eEEEEe
Q 012426 108 KIVLVG 113 (464)
Q Consensus 108 ~i~vls 113 (464)
+|...+
T Consensus 97 ~i~~~g 102 (438)
T PRK00286 97 EIEPAG 102 (438)
T ss_pred EeeeCC
Confidence 998644
No 165
>PRK07218 replication factor A; Provisional
Probab=81.89 E-value=11 Score=39.60 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=58.2
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeee-----c---CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCC
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----A---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR-----~---~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (464)
..+|+||.. .++.|.|.|+|.++- . -|.+.=+.|-|.||. |.+++..+. . |..
T Consensus 58 ~~kI~Di~~--------~~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~--Ir~tlW~~~-------~--l~~ 118 (423)
T PRK07218 58 SKDIKELST--------DDKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGT--ISYTAWKDF-------G--LSP 118 (423)
T ss_pred CccHhhCCC--------CCceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCe--EEEEEECCC-------C--CCC
Confidence 345666654 247899999998873 1 246777788888874 888887632 3 999
Q ss_pred CcEEEEEEEEEeCCCCCceEEEEEeeEEEEec
Q 012426 83 GASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 83 g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~ 114 (464)
||+|.|.+-..+.-. +.++|.+.+-.-+..
T Consensus 119 Gdvv~I~na~vre~~--g~~el~ig~~t~I~~ 148 (423)
T PRK07218 119 GDTVTIGNAGVREWD--GRPELNIGESTTVSL 148 (423)
T ss_pred CCEEEEeccEeeccC--CceEEeccCcceEEE
Confidence 999999987766554 348888765544443
No 166
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.74 E-value=0.6 Score=48.35 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeec
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITAS 178 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~ 178 (464)
.....+-.++++..-+|+.++||+-+.||-|...
T Consensus 182 g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rk 215 (455)
T KOG2509|consen 182 GAGAFLEQALINYALDFLNAKGYTPLTTPDILRK 215 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccCchhhhH
Confidence 4466777889999999999999999999999874
No 167
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=81.41 E-value=23 Score=32.09 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=54.4
Q ss_pred CCCCEEEEEEEEe--eeecCC---CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCce
Q 012426 27 RVGLMIVVAGWVR--TLRAQS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (464)
Q Consensus 27 ~~~~~V~v~GwV~--~iR~~g---~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (464)
..++.++|.|.|. |+.+.+ .+.| .|.|+.. .|.|....-.++ +..-|.-|.|+|.+....
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~--~v~V~Y~GilPD-------lFrEG~gVVveG~~~~~g----- 119 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEG--SVTVSYEGILPD-------LFREGQGVVVQGTLEKGN----- 119 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCc--EEEEEEeccCCc-------cccCCCeEEEEEEECCCC-----
Confidence 4689999999998 886653 3565 5899874 588887754432 378899999999995421
Q ss_pred EEEEEeeEEEEecCCCCC
Q 012426 102 VELKVNKIVLVGKSDPSY 119 (464)
Q Consensus 102 ~el~~~~i~vls~~~~~~ 119 (464)
.+++ =+||.||+..|
T Consensus 120 -~F~A--~evLAKhdekY 134 (159)
T PRK13150 120 -HVLA--HEVLAKHDENY 134 (159)
T ss_pred -EEEE--eEEEeCCCCCC
Confidence 2344 37899998665
No 168
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=80.98 E-value=7.3 Score=40.64 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=53.6
Q ss_pred CEEEEEEEEeee--ecCCCeEEEEEEeCcCCcceEEEEeCCccchhh-hhcCCCCCCcEEEEEEEEEeCCCCCceEEEEE
Q 012426 30 LMIVVAGWVRTL--RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (464)
Q Consensus 30 ~~V~v~GwV~~i--R~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~ 106 (464)
..++|.|.|... ..-|+..|+.+.|+.| .|-++.-.....|.. ++. |.+||.|.+.|.++... |.+
T Consensus 267 ~~~~v~g~v~~~p~~ieGghv~v~i~d~~G--~I~~~A~eptk~fr~~a~~--L~pGD~i~~~G~~~~~~-------~n~ 335 (421)
T COG1571 267 SKYRVVGRVEAEPRAIEGGHVVVEITDGEG--EIGAVAFEPTKEFRELARK--LIPGDEITVYGSVKPGT-------LNL 335 (421)
T ss_pred cceEEEEEEecccEEeeCCEEEEEecCCCc--eEEEEEecccccchHHHHh--cCCCCEEEEecCccccc-------eeE
Confidence 467889988665 3358999999999987 477776544433433 677 99999999999986532 666
Q ss_pred eeEEEEec
Q 012426 107 NKIVLVGK 114 (464)
Q Consensus 107 ~~i~vls~ 114 (464)
++++++.-
T Consensus 336 ek~~v~~l 343 (421)
T COG1571 336 EKFQVLKL 343 (421)
T ss_pred EEEEEEEe
Confidence 66666543
No 169
>PRK12366 replication factor A; Reviewed
Probab=80.95 E-value=9.3 Score=42.48 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=56.8
Q ss_pred CCCEEEEEEEEeeee---c------CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeC---
Q 012426 28 VGLMIVVAGWVRTLR---A------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS--- 95 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR---~------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~--- 95 (464)
.|..++|.|||.++- . .|++.=+.|.|.+| .|++++-.+.. +.+.. |..|+++.+.+-..+.
T Consensus 290 ~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG--~IR~t~w~~~~--d~~~~--l~~G~vy~is~~~vk~y~~ 363 (637)
T PRK12366 290 DGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTG--RVRVSFWGEKA--KILEN--LKEGDAVKIENCKVRTYYD 363 (637)
T ss_pred CCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCC--eEEEEEeCchh--hhhcc--cCCCCEEEEecCEEeeccc
Confidence 467899999998763 2 27888899999997 49999976532 12234 7899999998866551
Q ss_pred CCCCceEEEEEeeEEEEec
Q 012426 96 QGSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 96 ~~~~~~~el~~~~i~vls~ 114 (464)
..+...+||.+..-..+.+
T Consensus 364 ~~~~~~~El~~~~~s~I~~ 382 (637)
T PRK12366 364 NEGEKRVDLNAGYSSEIIK 382 (637)
T ss_pred cCCCcCEEEEcCCceEEEe
Confidence 1233458888866554433
No 170
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=80.88 E-value=23 Score=32.08 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=53.9
Q ss_pred CCCCEEEEEEEEe--eeecC-C--CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCce
Q 012426 27 RVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (464)
Q Consensus 27 ~~~~~V~v~GwV~--~iR~~-g--~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (464)
..++.++|.|.|. |+.+. + .+.| .|.|+.. .|.|....-.++ +..-|.-|.|+|.+....
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~~--~v~V~Y~GilPD-------lFrEG~gVVveG~~~~~g----- 119 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAGG--SVTVTYEGILPD-------LFREGQGIVAQGVLEEGN----- 119 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCCe--EEEEEEcccCCc-------cccCCCeEEEEEEECCCC-----
Confidence 4689999999998 77665 3 3566 5889864 588887754332 378899999999995421
Q ss_pred EEEEEeeEEEEecCCCCC
Q 012426 102 VELKVNKIVLVGKSDPSY 119 (464)
Q Consensus 102 ~el~~~~i~vls~~~~~~ 119 (464)
.++++ +||.||+..|
T Consensus 120 -~F~A~--~vLAKhdekY 134 (160)
T PRK13165 120 -HIEAK--EVLAKHDENY 134 (160)
T ss_pred -eEEEE--EEEecCCCCC
Confidence 33443 7899998664
No 171
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=80.59 E-value=9.9 Score=40.19 Aligned_cols=76 Identities=13% Similarity=0.303 Sum_probs=57.8
Q ss_pred CEEEEEEEEeeeecC-CCeEEEEEEeCcCCcceEEEEeCCccchhhhh-cCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 30 LMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVK-SGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 30 ~~V~v~GwV~~iR~~-g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~-~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
..|+|.|=|.+.+.+ .+-+|+.|.|... .|.||+-+... ..++ . +..|+-|.|.|.+.--+.. +.+.|.|+
T Consensus 18 ~~v~V~GEisn~~~~~sGH~YFtLkD~~a--~i~~vmf~~~~--~~l~f~--~~~G~~V~v~g~v~~y~~~-G~~ql~v~ 90 (432)
T TIGR00237 18 LQVWIQGEISNFTQPVSGHWYFTLKDENA--QVRCVMFRGNN--NRLKFR--PQNGQQVLVRGGISVYEPR-GDYQIICF 90 (432)
T ss_pred CcEEEEEEecCCeeCCCceEEEEEEcCCc--EEEEEEEcChh--hCCCCC--CCCCCEEEEEEEEEEECCC-CcEEEEEE
Confidence 479999999999875 5689999999874 59998876532 1111 3 8999999999999754332 34899999
Q ss_pred eEEEE
Q 012426 108 KIVLV 112 (464)
Q Consensus 108 ~i~vl 112 (464)
+++-.
T Consensus 91 ~i~~~ 95 (432)
T TIGR00237 91 EMQPA 95 (432)
T ss_pred EeccC
Confidence 88754
No 172
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=80.30 E-value=27 Score=31.24 Aligned_cols=75 Identities=21% Similarity=0.393 Sum_probs=53.1
Q ss_pred CCCCEEEEEEEEe--eeec-C-CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 27 RVGLMIVVAGWVR--TLRA-Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 27 ~~~~~V~v~GwV~--~iR~-~-g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
..++.|+|.|+|. ++.. . +.+.|. |.|+. ..|.|..+...+. +..-|.-|.|+|++... +
T Consensus 49 ~~g~~vrvgG~V~~gSi~~~~~~~~~F~-ltD~~--~~i~V~Y~G~lPd-------~F~eg~~VVv~G~~~~~----g-- 112 (148)
T PRK13254 49 PAGRRFRLGGLVEKGSVQRGDGLTVRFV-VTDGN--ATVPVVYTGILPD-------LFREGQGVVAEGRLQDG----G-- 112 (148)
T ss_pred cCCCeEEEeEEEecCcEEeCCCCEEEEE-EEeCC--eEEEEEECCCCCc-------cccCCCEEEEEEEECCC----C--
Confidence 4689999999995 4543 3 557775 78985 4688887754332 37889999999998432 1
Q ss_pred EEEEeeEEEEecCCCCC
Q 012426 103 ELKVNKIVLVGKSDPSY 119 (464)
Q Consensus 103 el~~~~i~vls~~~~~~ 119 (464)
..+++ +||.||+..|
T Consensus 113 ~F~A~--~vLaKc~skY 127 (148)
T PRK13254 113 VFVAD--EVLAKHDENY 127 (148)
T ss_pred eEEEE--EEEecCCCCC
Confidence 34454 7899998664
No 173
>PRK14699 replication factor A; Provisional
Probab=80.17 E-value=16 Score=39.25 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=57.7
Q ss_pred CCEEEEEEEEeeeec-------CC---CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCC
Q 012426 29 GLMIVVAGWVRTLRA-------QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~-------~g---~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~ 98 (464)
...|+|.|+|.++=. .| ++.=+.|-|.|| +|.+++..+... .+.. |..||+|.+.+-..+....
T Consensus 176 ~~~V~i~gkVl~~~~~R~f~~~dG~~g~v~~~~igDeTG--~ir~tlW~~~a~--~~~~--l~~Gd~v~I~~a~vr~~~~ 249 (484)
T PRK14699 176 MGDLNLTGKVLEISEIRTFQRKDGTSGKVGNLLLGDETG--TLRVTLWDDKTD--FLNQ--IEYGDTVELINAYARENAF 249 (484)
T ss_pred CCceEEEEEEEeccCceEEecCCCCceEEEEEEEEcCCc--eEEEEEECcccc--cccc--cCCCCEEEEecceEeeccc
Confidence 356999999976522 12 354468999998 499998865321 2335 9999999987665443332
Q ss_pred CceEEEEEeeEEEEecCCC
Q 012426 99 KQKVELKVNKIVLVGKSDP 117 (464)
Q Consensus 99 ~~~~el~~~~i~vls~~~~ 117 (464)
.+.+||.+.+..++.++..
T Consensus 250 ~~~~el~~~~~s~i~~~~~ 268 (484)
T PRK14699 250 TQKVELQVGNRSIIRKSEK 268 (484)
T ss_pred CCceEEEecCceEeecccc
Confidence 2569999998888887753
No 174
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=79.65 E-value=12 Score=29.22 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=33.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
.|.|+|+++.++| +|+++-- .+ +...++.+...++ .. +.+|+.|.+.
T Consensus 7 ~v~g~V~si~d~G--~~v~~g~-~g---v~Gfl~~~~~~~~--~~--~~~Gq~v~~~ 53 (74)
T cd05694 7 VLSGCVSSVEDHG--YILDIGI-PG---TTGFLPKKDAGNF--SK--LKVGQLLLCV 53 (74)
T ss_pred EEEEEEEEEeCCE--EEEEeCC-CC---cEEEEEHHHCCcc--cc--cCCCCEEEEE
Confidence 4999999999999 8999831 12 5667775543222 34 8999998876
No 175
>PRK07211 replication factor A; Reviewed
Probab=78.85 E-value=14 Score=39.50 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=52.1
Q ss_pred CEEEEEEEEeeeec-----------CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCC
Q 012426 30 LMIVVAGWVRTLRA-----------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (464)
Q Consensus 30 ~~V~v~GwV~~iR~-----------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~ 98 (464)
+.|+|.|||.++-. -|++.=+.|-|.|| .|++++-.+... ..... |..|+++.|.|.++..
T Consensus 64 ~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG--~Ir~TlW~d~ad-~~~~~--Le~GdV~~I~~~~~~~--- 135 (485)
T PRK07211 64 DEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETG--SVRVAFWDEQAV-AAEEE--LEVGQVLRIKGRPKDG--- 135 (485)
T ss_pred CceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCC--eEEEEEechHhH-hhhcc--cCCCCEEEEeceEecc---
Confidence 56999999977633 36899999999998 499999865321 01234 9999999999987532
Q ss_pred CceEEEEEeeE
Q 012426 99 KQKVELKVNKI 109 (464)
Q Consensus 99 ~~~~el~~~~i 109 (464)
-..+||.+..+
T Consensus 136 ys~~El~i~~v 146 (485)
T PRK07211 136 YNGLEVSVDKV 146 (485)
T ss_pred ccceEEEEeeE
Confidence 23478888854
No 176
>PRK15491 replication factor A; Provisional
Probab=78.13 E-value=18 Score=37.45 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=55.9
Q ss_pred CEEEEEEEEeeeec-------CC---CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEE-EEeCCCC
Q 012426 30 LMIVVAGWVRTLRA-------QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN-VVPSQGS 98 (464)
Q Consensus 30 ~~V~v~GwV~~iR~-------~g---~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~-v~~~~~~ 98 (464)
..|.|.|+|.++-. .| ++.=+.|.|.+| .|.+.+-..... .+.. |..||.|.+.+. ++.+. -
T Consensus 177 ~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG--~Ir~t~W~~~a~--~~~~--l~~Gd~V~i~~~~~r~~~-~ 249 (374)
T PRK15491 177 SDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETG--KIRVTLWDGKTD--LADK--LENGDSVEIINGYARTNN-Y 249 (374)
T ss_pred ccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCC--eEEEEEecchhc--cccc--CCCCCEEEEEeceEEEec-c
Confidence 45999999988743 23 466688999998 499988765321 1235 999999999764 54332 2
Q ss_pred CceEEEEEeeEEEEecCC
Q 012426 99 KQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 99 ~~~~el~~~~i~vls~~~ 116 (464)
.+.+||.+.+-..+.++.
T Consensus 250 ~g~~El~~~~~s~I~~~~ 267 (374)
T PRK15491 250 SQEVEIQIGNHGSLRKTD 267 (374)
T ss_pred CCCEEEEeCCCceEEECC
Confidence 346999987777777775
No 177
>PRK00036 primosomal replication protein N; Reviewed
Probab=76.57 E-value=9.6 Score=32.17 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=38.3
Q ss_pred ceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecC
Q 012426 60 NMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 60 ~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~ 115 (464)
.||+++... ..+.+.. ++.|+.|.|+|.+.++..+...+=|+++.|+.+.+.
T Consensus 48 ~i~ava~G~--~a~~~~~--l~~Gs~v~v~GFLa~~~~~~~~LVLHi~~Ie~i~~~ 99 (107)
T PRK00036 48 TISAVALGD--LALLLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGS 99 (107)
T ss_pred EEEEEEEhh--HHHHhcc--cCCCCEEEEEEEEEECCCCCCcEEEEhHHeEEcccc
Confidence 355655542 1233556 999999999999997666666799999999988655
No 178
>PRK07218 replication factor A; Provisional
Probab=76.31 E-value=28 Score=36.64 Aligned_cols=76 Identities=20% Similarity=0.130 Sum_probs=53.8
Q ss_pred CCEEEEEEEEeee--e-----cC-CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCc
Q 012426 29 GLMIVVAGWVRTL--R-----AQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (464)
Q Consensus 29 ~~~V~v~GwV~~i--R-----~~-g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~ 100 (464)
+..|+|.|+|.++ | +. +.+.=..|.|.|| +|.+++.... .. |..||+|.|.+-.++.-. +
T Consensus 172 ~~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG--~Ir~tlW~~~------~~--l~~Gd~v~I~na~v~e~~--G 239 (423)
T PRK07218 172 DRGVNVEARVLELEHREIDGRDGETTILSGVLADETG--RLPFTDWDPL------PE--IEIGASIRIEDAYVREFR--G 239 (423)
T ss_pred CCceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCc--eEEEEEeccc------cc--CCCCCEEEEeeeEEeccC--C
Confidence 4558999999876 1 11 2344456888887 4888877542 24 899999999998887654 4
Q ss_pred eEEEEEeeEEEEecCC
Q 012426 101 KVELKVNKIVLVGKSD 116 (464)
Q Consensus 101 ~~el~~~~i~vls~~~ 116 (464)
.++|.+.+-.-+...+
T Consensus 240 ~~elnv~~~t~I~~~d 255 (423)
T PRK07218 240 VPSVNVSEFTTVEALD 255 (423)
T ss_pred eEEEEECCceEEEECC
Confidence 4899998666665544
No 179
>PRK07080 hypothetical protein; Validated
Probab=75.05 E-value=3 Score=41.85 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=39.5
Q ss_pred CceEEE-ccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHH
Q 012426 244 SNVYTF-GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 294 (464)
Q Consensus 244 ~rVfeI-~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~ 294 (464)
+++|.+ |.|||+|++...+-+-||+|-|+-.-. +-+++.+.-+..+....
T Consensus 152 g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iG-t~e~v~~~r~~w~e~~~ 202 (317)
T PRK07080 152 GRLVDVASYCFRHEPSLDPARMQLFRMREYVRIG-TPEQIVAFRQSWIERGT 202 (317)
T ss_pred CcEEEeeeeeeccCCCCCcHHHhheeeeEEEEec-CHHHHHHHHHHHHHHHH
Confidence 367766 789999999888888899999997654 77788887777776543
No 180
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=74.89 E-value=2.9 Score=44.72 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHhh--hCCcEEEeCceEeec
Q 012426 147 VARVRNALAYATHKFFQ--ENGFIWISSPIITAS 178 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~--~~gF~EV~TP~L~~~ 178 (464)
-..++..|+...|++|. ..+.+||+||+|.+.
T Consensus 39 G~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~ 72 (539)
T PRK14894 39 GVELKNNIIADWWRTNVYERDDMEGLDAAILMNR 72 (539)
T ss_pred hHHHHHHHHHHHHHHHeeccCCEEEeeccccCCH
Confidence 35678888999988883 567789999999874
No 181
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=74.47 E-value=14 Score=40.25 Aligned_cols=117 Identities=10% Similarity=0.116 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-C-CCC---CCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASD-C-EGA---GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~-eg~---~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
......+.+.+|++|...||.|+-|-.+++.. . +.. .+.+ +.-.|| .+.++
T Consensus 361 ~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~-v~l~NP----------------------is~e~- 416 (551)
T TIGR00471 361 LKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNND-VKVANP----------------------KTLEY- 416 (551)
T ss_pred cChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCc-EEeCCC----------------------Cchhh-
Confidence 44456778889999999999999999998862 1 111 0001 222233 01111
Q ss_pred CcccccccchhHHH-HHHh---hcc--CceEEEccccccCCCCCccccccchhccceecc--CCHHHHHHHHHHHHHH
Q 012426 223 EKPAFLTVSGQLNA-ETYA---TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQY 292 (464)
Q Consensus 223 ~~~~yL~~Spql~l-qll~---~g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~~~~dlm~~~e~li~~ 292 (464)
-+|+.|-=--| +.+. .+. -|+||||++|...+.+ ..+-.+|.++-+-.+. .|+.|+...+|.++..
T Consensus 417 ---s~lR~SLlp~LL~~~~~N~~~~~~~~lFEiG~Vf~~~~~~-~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~ 490 (551)
T TIGR00471 417 ---TIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDKS-ETRSRVVTKLAVGITHSEANFNEIKSIVAALARE 490 (551)
T ss_pred ---hHhHhhhHHHHHHHHHhcccCCCCeeEEEEEEEEEcCCcc-ccccceeeEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 13444432222 3222 222 2799999999654321 1233344566565554 3789998888888854
No 182
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=74.37 E-value=15 Score=29.66 Aligned_cols=54 Identities=11% Similarity=0.227 Sum_probs=41.8
Q ss_pred EEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc-chhhhhcCCCCCCcEEEEEEE
Q 012426 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGN 91 (464)
Q Consensus 32 V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~V~G~ 91 (464)
=.+.|.|++++..+.=+|+.|+|.+|. +++.+.++.. .| -.. |..|+++-..-.
T Consensus 5 p~l~v~Iks~~~~~~D~~v~l~DpTG~--i~~tiH~~v~~~y--~~~--l~~GavLlLk~V 59 (86)
T PF15072_consen 5 PCLVVIIKSIVPSSEDAFVVLKDPTGE--IRGTIHRKVLEEY--GDE--LSPGAVLLLKDV 59 (86)
T ss_pred CEEEEEEEEeeccCCCeEEEEECCCCc--EEEEEeHHHHhhc--CCc--cccCEEEEEeee
Confidence 368999999999877889999999984 9999987642 12 123 888888877654
No 183
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=74.34 E-value=30 Score=29.74 Aligned_cols=36 Identities=22% Similarity=0.443 Sum_probs=28.5
Q ss_pred CCCCcEEEEEEEEEeCC----C-CC--ceEEEEEeeEEEEecC
Q 012426 80 ITTGASIWIQGNVVPSQ----G-SK--QKVELKVNKIVLVGKS 115 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~-~~--~~~el~~~~i~vls~~ 115 (464)
|..|+.|.|+|.+.... . ++ ...||.+++|.+|++.
T Consensus 62 l~KG~~V~V~G~l~~~~~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 62 VKKGSLIGITGSLKFDRWTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred cCCCCEEEEEEEEEecceEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 99999999999998652 1 21 2588999999999754
No 184
>PRK12366 replication factor A; Reviewed
Probab=72.34 E-value=19 Score=40.09 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=58.1
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeee---e----c---CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCC
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R----A---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~i---R----~---~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l 80 (464)
-..|++|... ...|+|.|||.++ | . -|++.=+.|-|.+| .|.+++-.+...+ +.. |
T Consensus 63 ~~~I~dl~p~--------~~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG--~Ir~t~W~~~~~~--~~~--l 128 (637)
T PRK12366 63 DFKISDIEEG--------QINVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTG--TIRLTLWNDNAKL--LKG--L 128 (637)
T ss_pred eeEHHHCcCC--------CcceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCC--EEEEEEEchhhhh--hcc--C
Confidence 3457766652 2569999999765 3 2 25788899999998 4999998754322 345 9
Q ss_pred CCCcEEEEEEEEEeCCCCCceEEEEEee
Q 012426 81 TTGASIWIQGNVVPSQGSKQKVELKVNK 108 (464)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~el~~~~ 108 (464)
..|+++.|.|-..+.-. +.+||.+..
T Consensus 129 e~G~v~~i~~~~v~~~~--~~~el~~~~ 154 (637)
T PRK12366 129 KEGDVIKIENARSRKWN--NDVELNSGS 154 (637)
T ss_pred CCCCEEEEeccEecccC--CceEEEcCC
Confidence 99999999997666533 347887654
No 185
>PRK06386 replication factor A; Reviewed
Probab=72.02 E-value=53 Score=33.82 Aligned_cols=78 Identities=10% Similarity=0.129 Sum_probs=53.6
Q ss_pred CCEEEEEEEEeeeec-------C-CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCc
Q 012426 29 GLMIVVAGWVRTLRA-------Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~-------~-g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~ 100 (464)
...|.|.|+|..+=. . |.+.=+.|-|.|| +|.+++..+ . |..|++|.|.+..++.-. +
T Consensus 117 ~~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTG--rIr~TlW~~--------~--l~eGd~v~i~na~v~e~~--G 182 (358)
T PRK06386 117 TPYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTA--RVRISSFGK--------P--LEDNRFVRIENARVSQYN--G 182 (358)
T ss_pred CCceEEEEEEEEccCceEecCCCccEEEEEEEEcCCC--eEEEEEccc--------c--ccCCCEEEEeeeEEEccC--C
Confidence 355778888865411 1 3455566777776 366665532 4 899999999998876654 4
Q ss_pred eEEEEEeeEEEEecCCCCCC
Q 012426 101 KVELKVNKIVLVGKSDPSYP 120 (464)
Q Consensus 101 ~~el~~~~i~vls~~~~~~P 120 (464)
.++|++.+...+.+.+.+.+
T Consensus 183 ~~el~v~~~t~I~~~~~~ie 202 (358)
T PRK06386 183 YIEISVGNKSVIKEVESDIN 202 (358)
T ss_pred eEEEEeCCeEEEEECCCCcc
Confidence 59999999888888654443
No 186
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=70.86 E-value=24 Score=39.24 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=44.9
Q ss_pred CCCCEEEEEEEEeeeec----CCCeEEEEEEe-CcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCC
Q 012426 27 RVGLMIVVAGWVRTLRA----QSSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~----~g~~~Fi~LrD-~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
..|+.++|.|.|.+... .+++.-+.+.| ++| .+++++=+. .|- .+. +.+|+.|.|.|++....
T Consensus 30 ~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~F~~--~~~-~~~--~~~g~~~~~~Gk~~~~~ 97 (630)
T TIGR00643 30 LPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYK--KLELRFFNR--AFL-KKK--FKVGSKVVVYGKVKSSK 97 (630)
T ss_pred CCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCC--EEEEEEECC--HHH-Hhh--CCCCCEEEEEEEEEeeC
Confidence 45789999999876421 13466678999 876 488877542 121 244 99999999999998653
No 187
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=70.42 E-value=12 Score=35.87 Aligned_cols=102 Identities=23% Similarity=0.301 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 012426 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (464)
Q Consensus 152 s~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~S 231 (464)
++|-+.+-+||.++|...|...-|.+.+. ..=+|.....+ -| +|++|-+.
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slvp~dD--ptllFtnAGM~---------------------------~F-kp~f~G~~ 51 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVVPRDD--PTLLFTNAGMN---------------------------QF-KPIFLGEV 51 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcCCCCC--Cchheeccchh---------------------------hh-hHHhcCCC
Confidence 35667788999999999998776664220 11133110000 01 22222222
Q ss_pred hhHHHHHHhhccCceEEEccccccCCC----CCccccccchhccceeccCCH--HHHHHHHHHHHHH
Q 012426 232 GQLNAETYATALSNVYTFGPTFRAENS----NTSRHLAEFWMIEPELAFADL--KDDMACATAYLQY 292 (464)
Q Consensus 232 pql~lqll~~g~~rVfeI~~~FR~E~~----~t~rHl~EFtmlE~e~a~~~~--~dlm~~~e~li~~ 292 (464)
+ ....|+-..-+|.|.-+. .|.||..=|.|| .-.+|.|| ++.|..+-+++..
T Consensus 52 ~--------p~~~r~~~~QkCiR~~DienVG~t~rHhTfFEML-GNfSFgdYFK~eaI~~awe~LT~ 109 (232)
T cd00673 52 P--------PPANRLVNSQKCIRAGDIDNVGKTGRHHTFFEML-GNFSFGDYFKEEAIAFAWELLTE 109 (232)
T ss_pred C--------CCCCceeeeeeceecCChhhccccccchhhhhhh-cccchhhhhHHHHHHHHHHHHHh
Confidence 2 124678888889997422 268999999998 45567675 6666666666543
No 188
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=70.27 E-value=14 Score=43.06 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=49.2
Q ss_pred CCEEEEEEEEeeeecC---C-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCC
Q 012426 29 GLMIVVAGWVRTLRAQ---S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~---g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
++.|+|.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. +..++++.|+|+..++.
T Consensus 897 ~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~~--~e~~~F~~--~~~~~~~--l~~~~~~~~~~~~~~~~ 962 (973)
T PRK07135 897 NTEYRLAIEVKNVKRLRKANKEYKKVILSDDSVE--ITIFVNDN--DYLLFET--LKKGDIYEFLISKSKNN 962 (973)
T ss_pred CCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCCc--EEEEEcHH--HHHHHHH--hhcCCEEEEEEEEcCCC
Confidence 5678999999887653 3 5999999999974 99988653 3666666 88999999999886653
No 189
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=69.60 E-value=2.2 Score=45.41 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHhhh--CCcEEEeCceEeecC---CCCCCCCc
Q 012426 148 ARVRNALAYATHKFFQE--NGFIWISSPIITASD---CEGAGEQF 187 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~--~gF~EV~TP~L~~~~---~eg~~~~F 187 (464)
..++..|.++.|++|.. .+++||+||+|.+.. ..|+-+.|
T Consensus 40 ~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~F 84 (558)
T COG0423 40 VELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKF 84 (558)
T ss_pred HHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCccccc
Confidence 56788999999999966 589999999999843 24555555
No 190
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=69.37 E-value=73 Score=28.77 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=53.1
Q ss_pred CCCCEEEEEEEEe--eeecC-C--CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCce
Q 012426 27 RVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (464)
Q Consensus 27 ~~~~~V~v~GwV~--~iR~~-g--~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (464)
..++.+++.|.|. |+.+. + .+.| .+.|+.. .+.|....-.++ +.+-|.-|.++|.+. . +
T Consensus 49 ~~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~~--~v~V~Y~GilPD-------lFrEGqgVVaeG~~~--~-g--- 112 (155)
T PRK13159 49 AGYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKNA--ATQVEYTGILPD-------LFRDNQSVIANGRMQ--G-G--- 112 (155)
T ss_pred ccCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCCc--EEEEEEccCCCc-------cccCCCeEEEEEEEc--C-C---
Confidence 4579999999998 88665 3 3566 5789864 588887754332 377899999999985 1 1
Q ss_pred EEEEEeeEEEEecCCCCC
Q 012426 102 VELKVNKIVLVGKSDPSY 119 (464)
Q Consensus 102 ~el~~~~i~vls~~~~~~ 119 (464)
..+++ +||.||+..|
T Consensus 113 -~F~A~--~vLAKHde~Y 127 (155)
T PRK13159 113 -RFVAN--EVLAKHDETY 127 (155)
T ss_pred -EEEEe--EEEecCCCcC
Confidence 34444 7899998664
No 191
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=69.04 E-value=2.1 Score=43.48 Aligned_cols=53 Identities=17% Similarity=0.352 Sum_probs=37.8
Q ss_pred EEEeeCC---ccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhhh---HhhhhcCCCCCCC
Q 012426 401 MDMLVPR---IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSG---LVFILIKVTNFLN 463 (464)
Q Consensus 401 fdl~~~G---igEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~g---L~mll~~~~~I~~ 463 (464)
.|++++| .=||+|++. -+|+.| +..|++++.|.. +.||+| |.||..|.++||+
T Consensus 266 vdv~~~~~~~WlEi~G~Gm--v~P~VL----~~~G~~~~~~~G----fAfGlGlERlAMLkygI~DIR~ 324 (335)
T COG0016 266 VDVYCPGCGGWLEILGCGM--VHPNVL----EAVGIDPEEYSG----FAFGLGLERLAMLKYGIPDIRD 324 (335)
T ss_pred EEEEEcCCCCEEEEecccc--cCHHHH----HhcCCCCCcceE----EEEeecHHHHHHHHhCCcHHHH
Confidence 5677764 227776664 445555 567888776542 378999 9999999999986
No 192
>PRK08402 replication factor A; Reviewed
Probab=68.70 E-value=38 Score=34.89 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=56.1
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeee---ec----C---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCC
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA----Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~i---R~----~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~ 81 (464)
.+|++|... .+.|.+.|+|.++ |. . |++.=+.|.|.||. +.+++..+... +.+.. |.
T Consensus 63 ~kI~dl~~g--------~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~--ir~TlW~~~a~-~~~~~--l~ 129 (355)
T PRK08402 63 MHISDLVPG--------MRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGR--ARVVLWDAKVA-KYYNK--IN 129 (355)
T ss_pred cCHHHccCC--------CceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCe--EEEEEechhhh-hhccc--CC
Confidence 456666542 3689999999886 31 2 23555899999984 88888764311 01235 99
Q ss_pred CCcEEEEEE-EEEeCCCCCceEEEEEeeEEEEe
Q 012426 82 TGASIWIQG-NVVPSQGSKQKVELKVNKIVLVG 113 (464)
Q Consensus 82 ~g~~V~V~G-~v~~~~~~~~~~el~~~~i~vls 113 (464)
.||+|.|.| .|...-.+ .++|.+.+-..+.
T Consensus 130 ~Gdvi~I~~a~V~e~~~G--~~eLsvg~~s~i~ 160 (355)
T PRK08402 130 VGDVIKVIDAQVRESLSG--LPELHINFRARII 160 (355)
T ss_pred CCCEEEEECCEEeecCCC--cEEEEECCCceEE
Confidence 999999985 55443333 3688886554443
No 193
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=68.18 E-value=46 Score=26.24 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=39.3
Q ss_pred EEEEEEeeeecCC-CeEEEEEEeCcCC------cceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEE
Q 012426 33 VVAGWVRTLRAQS-SVTFIEVNDGSCL------SNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (464)
Q Consensus 33 ~v~GwV~~iR~~g-~~~Fi~LrD~sg~------~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~ 105 (464)
+|.|.|....... .-.|. |+|..+- +.|=|...+ ... +.+||.|.|+|++..-.. ..+|.
T Consensus 1 ~v~GvVTa~~~~~~~~Gff-iQd~~~d~~~~ts~gifV~~~~-------~~~--~~~Gd~V~vtG~v~ey~g---~tql~ 67 (78)
T cd04486 1 TVEGVVTAVFSGGGLGGFY-IQDEDGDGDPATSEGIFVYTGS-------GAD--VAVGDLVRVTGTVTEYYG---LTQLT 67 (78)
T ss_pred CeEEEEEEEcCCCCcCEEE-EEcCCCCCCCcccceEEEecCC-------CCC--CCCCCEEEEEEEEEeeCC---eEEEc
Confidence 3678888887752 33455 7775210 112222111 124 999999999999987653 24555
Q ss_pred Eee-EEEEe
Q 012426 106 VNK-IVLVG 113 (464)
Q Consensus 106 ~~~-i~vls 113 (464)
..+ +++++
T Consensus 68 ~~~~~~~~~ 76 (78)
T cd04486 68 AVSAIEVLG 76 (78)
T ss_pred cCCceEEec
Confidence 543 55544
No 194
>COG3689 Predicted membrane protein [Function unknown]
Probab=68.16 E-value=24 Score=34.47 Aligned_cols=87 Identities=13% Similarity=0.184 Sum_probs=56.2
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc----chhhhhcCCCCCCcEEEEEEEEEeCCC---C
Q 012426 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQVKSGLITTGASIWIQGNVVPSQG---S 98 (464)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~----~~~~~~~~~l~~g~~V~V~G~v~~~~~---~ 98 (464)
+..|++|.+.|.|.+=-..++--++..|=| . +=|+.++..- ..+.... ++..++|.|+|++....- +
T Consensus 172 ef~Gk~Ie~tGFVy~~~~~~~N~lflaRFg--i--icC~ADa~vygl~v~~~~~~~--y~ndtWltvkGtl~~e~~~~~~ 245 (271)
T COG3689 172 EFAGKKIEFTGFVYNDESFPKNYLFLARFG--I--ICCAADAGVYGLLVELDNQTD--YKNDTWLTVKGTLSSEYLSDFK 245 (271)
T ss_pred hhcCceEEEEEEEECCCCCCcceeehhhhh--e--eeeeccceeEEEEEEcccccc--CCCCceEEEEeEEEeeecCchh
Confidence 577999999999977444444444444443 2 4444444321 1112234 999999999999986532 1
Q ss_pred CceEEEEEeeEEEEecCCCC
Q 012426 99 KQKVELKVNKIVLVGKSDPS 118 (464)
Q Consensus 99 ~~~~el~~~~i~vls~~~~~ 118 (464)
.+-..|+|++++++.+...+
T Consensus 246 ~~ipvi~v~sv~~I~kP~nP 265 (271)
T COG3689 246 KRIPVIEVDSVEVIPKPANP 265 (271)
T ss_pred hcCcEEEeeeeeecCCCCCC
Confidence 23478899999999886534
No 195
>PRK07211 replication factor A; Reviewed
Probab=67.19 E-value=39 Score=36.25 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=56.3
Q ss_pred CCEEEEEEEEeee---e----cC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEE-EEEeCCC
Q 012426 29 GLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG-NVVPSQG 97 (464)
Q Consensus 29 ~~~V~v~GwV~~i---R----~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G-~v~~~~~ 97 (464)
...|.|.|+|.++ | +. |++.=+.|-|.||. |.+.+..+... .+.. |..|++|.|.| .|..-.
T Consensus 171 ~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG~--IR~TlW~d~Ad--~~~~--le~G~Vv~I~~a~Vre~~- 243 (485)
T PRK07211 171 LSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETGR--VRVTLWDDRAD--LAEE--LDAGESVEIVDGYVRERD- 243 (485)
T ss_pred CCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCCe--EEEEEechhhh--hhcc--CCCCCEEEEEeeEEEecC-
Confidence 4678999999854 2 22 46777899999984 99998865321 1345 99999999974 554432
Q ss_pred CCceEEEEEeeEEEEecCC
Q 012426 98 SKQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 98 ~~~~~el~~~~i~vls~~~ 116 (464)
+++||.+.+-..+.++.
T Consensus 244 --g~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 244 --GSLELHVGDRGAVEEVD 260 (485)
T ss_pred --CcEEEEECCCceEEECC
Confidence 45899998777777764
No 196
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=65.91 E-value=22 Score=39.22 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeec
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITAS 178 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~ 178 (464)
.....++...+|+.|...||.||-|-.|++.
T Consensus 396 ~~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~ 426 (597)
T PLN02265 396 QQPLNQFSDLLRAEVAMAGFTEVLTWILCSH 426 (597)
T ss_pred CCHHHHHHHHHHHHHHHCCceeeeceeeCCh
Confidence 3445777888999999999999999999885
No 197
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.93 E-value=48 Score=36.76 Aligned_cols=91 Identities=14% Similarity=0.260 Sum_probs=61.9
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEeCcCCcceEEEEeCCccchhhh-hcCCCC
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLIT 81 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~-~~~~l~ 81 (464)
+.|++|... ....+|+|||.++ |. .|++.-++|.|.+| .|++.+-.+.. +++ .. |.
T Consensus 181 ~pI~~L~py--------~~~wtIkaRV~~Ks~ir~~~~~~gegkvfsv~L~Degg--~Irat~f~~~~--dkf~~~--l~ 246 (608)
T TIGR00617 181 MPIASLSPY--------QNKWTIKARVTNKSEIRTWSNARGEGKLFNVELLDESG--EIRATAFNEQA--DKFYDI--IQ 246 (608)
T ss_pred EEHHHCCCC--------CCceEEEEEEEeccccceecCCCCCceeeEEEEecCCC--eEEEEECchHH--HHHhhh--cc
Confidence 456666653 2459999999753 33 26788889999665 59998876532 122 34 99
Q ss_pred CCcEEEEE-EEEEeCCC----CCceEEEEEeeEEEEecCC
Q 012426 82 TGASIWIQ-GNVVPSQG----SKQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 82 ~g~~V~V~-G~v~~~~~----~~~~~el~~~~i~vls~~~ 116 (464)
.|+++.+. |.|+.... ....+||...+-+++-+|.
T Consensus 247 eG~VY~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~~~ 286 (608)
T TIGR00617 247 EGKVYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEECE 286 (608)
T ss_pred cCCEEEECceEEEEccccccCCCCCEEEEECCCeEEEECC
Confidence 99999994 56655432 1245899998888887775
No 198
>PLN02734 glycyl-tRNA synthetase
Probab=61.86 E-value=3.4 Score=45.86 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHh-hhCCcEEEeCceEeecC-C--CCCCCCc
Q 012426 147 VARVRNALAYATHKFF-QENGFIWISSPIITASD-C--EGAGEQF 187 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff-~~~gF~EV~TP~L~~~~-~--eg~~~~F 187 (464)
--.+++.|++..|++| .+.+.+||+||+|++.. . .|+-+.|
T Consensus 108 G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F 152 (684)
T PLN02734 108 GCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKF 152 (684)
T ss_pred hHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCcccc
Confidence 3578899999999988 55677899999999853 2 3444445
No 199
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=60.12 E-value=3 Score=45.25 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHh-hhCCcEEEeCceEeec
Q 012426 147 VARVRNALAYATHKFF-QENGFIWISSPIITAS 178 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff-~~~gF~EV~TP~L~~~ 178 (464)
-..++..|.+.+|++| .+.|++||+||+|++.
T Consensus 36 G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~ 68 (551)
T TIGR00389 36 GAVLKNNIKNAWRKFFIKNERVLEIDTPIITPE 68 (551)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEeeccccCCH
Confidence 4688999999999988 4788999999999984
No 200
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=59.36 E-value=54 Score=24.11 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=38.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEeC-cCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDG-SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~-sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
.+.|.|..++..|-.+.++|... ++ +.|.+-++.+. .+ .. +..||.|.+.
T Consensus 6 ~l~a~V~~v~~~G~~vRlEl~~~~~~-~~iEvel~~~~---~~-l~--l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVGPEVRLELKRLDDG-EPIEVELPRER---RQ-LG--LQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecCCeEEEEEEECCCC-CEEEEEeCHhH---Hh-cC--CCCCCEEEEE
Confidence 57889999999999999999776 44 57999888753 11 12 7779999875
No 201
>PRK04036 DNA polymerase II small subunit; Validated
Probab=58.65 E-value=35 Score=36.87 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=45.6
Q ss_pred CCCEEEEEEEEeeeecCCC-eEEEEEEeCcCCcceEEEEeCCccch-hhhhcCCCCCCcEEEEEEEEEe
Q 012426 28 VGLMIVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQGNVVP 94 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~g~-~~Fi~LrD~sg~~~iQvv~~~~~~~~-~~~~~~~l~~g~~V~V~G~v~~ 94 (464)
.++.+.|-|-|..+|.-++ -..+.|-|.+| ++++++.++...+ +.... |-.|.+|.|.|+...
T Consensus 152 ~~~~~~viG~v~~~~~~~~g~~~~~LED~sg--rv~l~~~~~~~~~~~~~~~--lvtg~vv~v~G~~~~ 216 (504)
T PRK04036 152 GGEEVSIIGMVSDIRSTKNGHKIVELEDTTG--TFPVLIMKDREDLAELADE--LLLDEVIGVEGTLSG 216 (504)
T ss_pred CCceEEEEEEEEEeecccCCceEEEEECCCC--eEEEEeecchhhhhhhhhc--ccCceEEEEEEEEcC
Confidence 5688999999999985422 22578999997 4999986543122 21235 899999999998753
No 202
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=58.24 E-value=27 Score=29.41 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=28.5
Q ss_pred CCCCcEEEEEEEEEeCCC----CC--ceEEEEEeeEEEEecC
Q 012426 80 ITTGASIWIQGNVVPSQG----SK--QKVELKVNKIVLVGKS 115 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~~----~~--~~~el~~~~i~vls~~ 115 (464)
|..||.|.|+|.+....= +. ...||.+++|.+|++.
T Consensus 65 l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 65 CTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred cCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 999999999999987631 21 2588999999998764
No 203
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=57.00 E-value=30 Score=27.79 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=32.9
Q ss_pred ceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCC----C--CceEEEEEeeEEEE
Q 012426 60 NMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG----S--KQKVELKVNKIVLV 112 (464)
Q Consensus 60 ~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~----~--~~~~el~~~~i~vl 112 (464)
-++|.+-.+.. -..++. +.+||.|.|+|.+....- + ...+++.+++|.++
T Consensus 45 ~~~v~~~g~~a-~~~~~~--~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~~ 100 (100)
T cd04496 45 WIRVVAFGKLA-ENAAKY--LKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEFL 100 (100)
T ss_pred EEEEEEEhHHH-HHHHHH--hCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEEC
Confidence 47777665421 112456 999999999999976531 1 23578888877653
No 204
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=55.88 E-value=81 Score=23.85 Aligned_cols=50 Identities=8% Similarity=0.172 Sum_probs=34.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc---hhhh-hcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQV-KSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~---~~~~-~~~~l~~g~~V~V~ 89 (464)
.+.|.|.++...| +|++|.+..+ +...+...... +... +. ++.||.|.|.
T Consensus 6 ~~~g~V~~v~~~g--~~v~l~~~~~---~~gll~~s~l~~~~~~~~~~~--~~~Gd~v~vk 59 (76)
T cd04452 6 LVVVTVKSIADMG--AYVSLLEYGN---IEGMILLSELSRRRIRSIRKL--VKVGRKEVVK 59 (76)
T ss_pred EEEEEEEEEEccE--EEEEEcCCCC---eEEEEEhHHcCCcccCCHHHe--eCCCCEEEEE
Confidence 4689999999877 9999987533 56666644311 1112 23 8999998886
No 205
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=55.13 E-value=76 Score=27.57 Aligned_cols=62 Identities=21% Similarity=0.400 Sum_probs=39.0
Q ss_pred CCEEEEEEEEeeeecC-CC-eEEEE-E----EeCc---CCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCC
Q 012426 29 GLMIVVAGWVRTLRAQ-SS-VTFIE-V----NDGS---CLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~-g~-~~Fi~-L----rD~s---g~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ 97 (464)
++.+++.|.|.+.... ++ ..|.. + ..+. ...++++..+++.. .. +.+||.|.++|++...+.
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~--l~~Gd~i~~~g~l~~~~~ 146 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQ-----PR--LQPGDRIRVRGKLKPPSG 146 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEeccccc-----cc--cCCCCEEEEEEEEecCCC
Confidence 7899999999888665 32 22332 1 1111 11356666655432 14 899999999999987543
No 206
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=54.53 E-value=27 Score=28.40 Aligned_cols=36 Identities=14% Similarity=0.445 Sum_probs=23.6
Q ss_pred hhcCCCCCCcEEEEEEEEEeCC----CC--CceEEEEEeeEEEE
Q 012426 75 VKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLV 112 (464)
Q Consensus 75 ~~~~~l~~g~~V~V~G~v~~~~----~~--~~~~el~~~~i~vl 112 (464)
.+. +..||.|.|+|.+.... .+ ...++|.|++|.+|
T Consensus 63 ~~~--l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 63 AEY--LKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp HHH----TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred ceE--EcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 356 99999999999987542 22 23588999998875
No 207
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=53.60 E-value=1.1e+02 Score=27.32 Aligned_cols=35 Identities=17% Similarity=0.507 Sum_probs=25.2
Q ss_pred CCCCcEEEEEEEEEeCC----CCC--ceEEEEEeeE----EEEec
Q 012426 80 ITTGASIWIQGNVVPSQ----GSK--QKVELKVNKI----VLVGK 114 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~~--~~~el~~~~i----~vls~ 114 (464)
|.+||.|.|+|.+.... .++ ...||.+.++ .+|..
T Consensus 72 l~KG~~V~V~GrL~~~~y~dkdG~~r~~~eVvv~~~~~~i~fl~~ 116 (152)
T PRK06642 72 VTKGSKLYIEGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDS 116 (152)
T ss_pred CCCCCEEEEEEEEEeCeeECCCCCEEEEEEEEEEecccceEeccC
Confidence 99999999999998652 121 2477888765 56654
No 208
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=53.48 E-value=1.4e+02 Score=33.42 Aligned_cols=78 Identities=17% Similarity=0.292 Sum_probs=51.4
Q ss_pred CCCCEEEEEEEEeeeecC----CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 27 RVGLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~----g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
..|..|++.|.|.+.-.. ++..=+.+.|+++ .+-+++=.... | ..+. ++.|..|.|+|++...+. ..
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~l~v~~~d~~~--~l~l~fFn~~~-~-l~~~--~~~G~~v~v~Gk~~~~~~---~~ 128 (677)
T COG1200 58 RPGEIVTIEGTVLSHEKFPFGKRKLLKVTLSDGTG--VLTLVFFNFPA-Y-LKKK--LKVGERVIVYGKVKRFKG---GL 128 (677)
T ss_pred CCCceEEEEEEEEeeeccCCCCCceEEEEEecCcE--EEEEEEECccH-H-HHhh--CCCCCEEEEEEEEeeccC---ce
Confidence 568999999999665332 2344466888876 36666543221 2 1234 999999999999988542 35
Q ss_pred EEEEeeEEEEe
Q 012426 103 ELKVNKIVLVG 113 (464)
Q Consensus 103 el~~~~i~vls 113 (464)
++.--++.+.+
T Consensus 129 ~~~hpe~~~~~ 139 (677)
T COG1200 129 QITHPEYIVND 139 (677)
T ss_pred EEEcceEEecC
Confidence 66555565554
No 209
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=51.92 E-value=26 Score=32.47 Aligned_cols=37 Identities=11% Similarity=0.369 Sum_probs=29.2
Q ss_pred CCCCcEEEEEEEEEeCC----CC--CceEEEEEeeEEEEecCC
Q 012426 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~el~~~~i~vls~~~ 116 (464)
|++||-|.|+|.+..+. .+ ...+||.|++|.+|++..
T Consensus 67 l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~~ 109 (182)
T PRK08486 67 LSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSKS 109 (182)
T ss_pred cCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCCC
Confidence 99999999999998652 12 235899999999997653
No 210
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=50.33 E-value=1.2e+02 Score=37.06 Aligned_cols=81 Identities=14% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCCEEEEEEEEeee--ecC--CC-eEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 28 VGLMIVVAGWVRTL--RAQ--SS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 28 ~~~~V~v~GwV~~i--R~~--g~-~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
....|+|.|.|-.+ |.. |+ +.=+.|.|.++.-.+...+..+ ...+.... |..|++|.|+|.+.-.+-. +++
T Consensus 235 ~~~~v~i~G~if~~e~~~~k~~~~~~~~~~td~~~s~~~k~f~~~~-~~~~~~~~--~~~g~~v~~~g~~~~d~~~-~~~ 310 (1437)
T PRK00448 235 EERRVVVEGYVFKVEIKELKSGRHILTFKITDYTSSIIVKKFSRDK-EDLKKFDE--IKKGDWVKVRGSVQNDTFT-RDL 310 (1437)
T ss_pred cCCeEEEEEEEEEEEEEeccCCCEEEEEEEEcCCCCEEEEEEecCc-chhHHHhc--CCCCCEEEEEEEEeccCCC-Cce
Confidence 34689999999776 332 33 4447789988642344444222 12233456 9999999999999876533 347
Q ss_pred EEEEeeEEEE
Q 012426 103 ELKVNKIVLV 112 (464)
Q Consensus 103 el~~~~i~vl 112 (464)
.+.+..+..+
T Consensus 311 ~~~~~~~~~~ 320 (1437)
T PRK00448 311 VMNAQDINEI 320 (1437)
T ss_pred EEEeeeeeec
Confidence 7777776654
No 211
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=50.02 E-value=1e+02 Score=22.86 Aligned_cols=48 Identities=6% Similarity=0.239 Sum_probs=33.5
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc--h--hhhhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y--DQVKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~--~--~~~~~~~l~~g~~V~V~ 89 (464)
.+.|+|.++...| +|+.|-++ ++..++.+... + +.-+. +.+|+.|.|.
T Consensus 3 ~~~g~V~~v~~~G--~~V~l~~~-----~~gli~~s~l~~~~~~~~~~~--~~~G~~i~v~ 54 (70)
T cd05698 3 KTHGTIVKVKPNG--CIVSFYNN-----VKGFLPKSELSEAFIKDPEEH--FRVGQVVKVK 54 (70)
T ss_pred EEEEEEEEEecCc--EEEEECCC-----CEEEEEHHHcChhhcCCHHHc--ccCCCEEEEE
Confidence 4789999998877 89999543 67777754321 1 11234 8999999986
No 212
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=49.97 E-value=33 Score=31.43 Aligned_cols=36 Identities=11% Similarity=0.405 Sum_probs=28.7
Q ss_pred CCCCcEEEEEEEEEeCCC----CC--ceEEEEEeeEEEEecC
Q 012426 80 ITTGASIWIQGNVVPSQG----SK--QKVELKVNKIVLVGKS 115 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~~----~~--~~~el~~~~i~vls~~ 115 (464)
|.+||.|.|+|.+....= ++ ..++|.+++|.+|+..
T Consensus 70 LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 70 LRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred CCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 999999999999986631 21 3589999999998754
No 213
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=49.11 E-value=9.1 Score=40.91 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=32.1
Q ss_pred ccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhhh---HhhhhcCCCCCCC
Q 012426 408 IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSG---LVFILIKVTNFLN 463 (464)
Q Consensus 408 igEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~g---L~mll~~~~~I~~ 463 (464)
| ||+|++. -+|+.| +..|+ ++.+ ..+.||+| |+|+..|.++||+
T Consensus 425 i-Ei~g~Gm--~rpevl----~~~Gi-~~~~----~~~A~GlGleRlaMl~ygi~DIR~ 471 (492)
T PLN02853 425 V-EVGNSGM--FRPEML----LPMGL-PEDV----NVIAWGLSLERPTMILYGIDNIRD 471 (492)
T ss_pred E-EEecCcC--cCHHHH----HhCCC-CCcc----eEEEEEecHHHHHHHHhCCcHHHH
Confidence 5 8887774 455555 45687 3332 35678999 9999999999996
No 214
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=48.88 E-value=2.6e+02 Score=33.46 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=54.2
Q ss_pred CEEEEEEEEeeeec----CC-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEE
Q 012426 30 LMIVVAGWVRTLRA----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (464)
Q Consensus 30 ~~V~v~GwV~~iR~----~g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el 104 (464)
..|+|.|.|-.+-. .| .+.=+.+.|++..-.+|...... +.-+.+.. |..|++|.|+|.+....-. +.+.+
T Consensus 240 ~~v~v~G~IF~~e~~~~ksGr~l~~i~vTD~t~Sl~~k~f~~~~-ed~~~~~~--ik~g~wvk~~g~v~~d~f~-~~l~m 315 (1444)
T COG2176 240 TRVKVEGYIFKIEIKELKSGRTLLNIKVTDYTSSLILKKFLRDE-EDEKKFDG--IKKGMWVKARGNVQLDTFT-RDLTM 315 (1444)
T ss_pred cceEEEEEEEEEeeeecccCcEEEEEEEecCchheeehhhcccc-ccHHHHhh--cccCcEEEEEEEEEecccc-cceEE
Confidence 34999999977644 23 45567789987543556555422 22334567 9999999999999987543 45777
Q ss_pred EEeeEEEEe
Q 012426 105 KVNKIVLVG 113 (464)
Q Consensus 105 ~~~~i~vls 113 (464)
.+..|.-+.
T Consensus 316 ~i~~I~ei~ 324 (1444)
T COG2176 316 IINDINEIE 324 (1444)
T ss_pred Ehhhhhhhh
Confidence 777765544
No 215
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=48.26 E-value=35 Score=31.40 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=29.4
Q ss_pred hhcCCCCCCcEEEEEEEEEeCCC----C--CceEEEEEeeEEEEecC
Q 012426 75 VKSGLITTGASIWIQGNVVPSQG----S--KQKVELKVNKIVLVGKS 115 (464)
Q Consensus 75 ~~~~~l~~g~~V~V~G~v~~~~~----~--~~~~el~~~~i~vls~~ 115 (464)
.+. |.+||.|.|+|.+....= + ...+||.|+.|.+|.+.
T Consensus 62 ~~~--l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 62 ANY--LKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred HHH--cCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 345 999999999999987631 1 12588888999888753
No 216
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=47.84 E-value=19 Score=38.71 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=35.1
Q ss_pred ceEEEccccccCCCCCccccccchhccceec--cCCHHHHHHHHHHHHHHH
Q 012426 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELA--FADLKDDMACATAYLQYV 293 (464)
Q Consensus 245 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a--~~~~~dlm~~~e~li~~i 293 (464)
|+||||+|||.+.....+|+..+.+..+-.+ -.|+.|+...++.|++.+
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~L 260 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQF 260 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHc
Confidence 8999999998863213568877776642121 237999999999998754
No 217
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=47.34 E-value=1.1e+02 Score=25.30 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=41.2
Q ss_pred EEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEe
Q 012426 48 TFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVG 113 (464)
Q Consensus 48 ~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls 113 (464)
-=+.|+||.. .+|.++..... ..+..|.|..|++|.+.-....+-... .--|.+.+++|+.
T Consensus 40 yR~~lSDG~~--~~~amLatqln--~lv~~g~l~~~siirl~~y~~n~v~~~-k~iiiil~leVv~ 100 (101)
T PF04057_consen 40 YRLVLSDGVH--SIQAMLATQLN--HLVESGELQKGSIIRLKQYTCNTVKNG-KKIIIILDLEVVQ 100 (101)
T ss_dssp EEEEEESSSE--EEEEEESGGGH--HHHHTTSSSTT-EEEEEEEEEEESTTS-SEEEEEEEEEEEE
T ss_pred EEEEEEChHH--HHHHHhHHHhH--HHHhcCCcccCCEEEEeEEEEeeccCC-CEEEEEEeeEEEe
Confidence 3377999986 49999886542 224445699999999998776554411 2357777888764
No 218
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=46.93 E-value=36 Score=31.59 Aligned_cols=38 Identities=16% Similarity=0.452 Sum_probs=29.9
Q ss_pred hcCCCCCCcEEEEEEEEEeCCC----C--CceEEEEEeeEEEEecC
Q 012426 76 KSGLITTGASIWIQGNVVPSQG----S--KQKVELKVNKIVLVGKS 115 (464)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~----~--~~~~el~~~~i~vls~~ 115 (464)
+. |++||.|.|+|.+....= + ...+||.|++|.+|+..
T Consensus 68 ~~--LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 68 EY--LKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred HH--hCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 45 999999999999986531 1 23589999999998754
No 219
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.84 E-value=24 Score=26.71 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHhhhCCcEEEe
Q 012426 149 RVRNALAYATHKFFQENGFIWIS 171 (464)
Q Consensus 149 ~~rs~i~~~~r~ff~~~gF~EV~ 171 (464)
+.|.+|++.||+||...|=++|-
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAVL 24 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEEE
Confidence 56899999999999999988774
No 220
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=46.67 E-value=1e+02 Score=22.87 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=33.0
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc--ch-hh-hhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQ-VKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~--~~-~~-~~~~~l~~g~~V~V~ 89 (464)
.+.|+|.++...| +|+.|.++ +...+..... .+ +. -.. ++.||.|.+.
T Consensus 3 ~v~g~V~~v~~~G--v~V~l~~~-----~~G~v~~s~l~~~~~~~~~~~--~~~Gd~v~~~ 54 (68)
T cd05707 3 VVRGFVKNIANNG--VFVTLGRG-----VDARVRVSELSDSYLKDWKKR--FKVGQLVKGK 54 (68)
T ss_pred EEEEEEEEEECcc--EEEEeCCC-----CEEEEEHHHCCchhhcCHhhc--cCCCCEEEEE
Confidence 4789999999888 99999764 4556654321 11 11 233 8999998886
No 221
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=46.47 E-value=36 Score=30.94 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=34.7
Q ss_pred eEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCC----CC--CceEEEEEeeEEEEecC
Q 012426 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (464)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~----~~--~~~~el~~~~i~vls~~ 115 (464)
|.|++-.+... ...+. |.+|+.|.|+|.+.... .+ ....||.|++|.+|.+.
T Consensus 49 i~vv~wgk~Ae-~~~~~--l~KG~~V~VeGrl~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 49 INCVIWRQQAE-NLANW--AKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EEEEEEcHHHH-HHHHH--cCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 55665544211 11345 99999999999998652 12 13488999999988754
No 222
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.53 E-value=6 Score=41.69 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=0.0
Q ss_pred EEccccccCCCCCcc----ccccchhccce
Q 012426 248 TFGPTFRAENSNTSR----HLAEFWMIEPE 273 (464)
Q Consensus 248 eI~~~FR~E~~~t~r----Hl~EFtmlE~e 273 (464)
+||++||||=| +| +--||+|-|+|
T Consensus 214 qiG~~fRNEIS--pRsGLlRvrEF~maEIE 241 (599)
T KOG2298|consen 214 QIGKSFRNEIS--PRSGLLRVREFTMAEIE 241 (599)
T ss_pred HhchHhhhccC--cccCceeEEEeehHHhh
No 223
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.97 E-value=41 Score=39.66 Aligned_cols=36 Identities=11% Similarity=0.318 Sum_probs=29.2
Q ss_pred CCCEEEEEEEEeeeecC-----C-CeEEEEEEeCcCCcceEEEE
Q 012426 28 VGLMIVVAGWVRTLRAQ-----S-SVTFIEVNDGSCLSNMQCVM 65 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~-----g-~~~Fi~LrD~sg~~~iQvv~ 65 (464)
.+..|++.|.|.++|.. | .++|+.|.|.+|. +.+++
T Consensus 980 ~g~~v~v~G~i~~~~~~~~tkkG~~maf~tleD~tg~--ie~vi 1021 (1022)
T TIGR00594 980 NDSQVRTLGGLNSVKKKITTKNGKPMAFLQLEDETGS--IEVVV 1021 (1022)
T ss_pred CCCEEEEEEEEEEEEEecccCCCCEEEEEEEEECCCc--EEEEe
Confidence 46789999999877652 2 4999999999985 88875
No 224
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=44.63 E-value=50 Score=37.85 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=21.1
Q ss_pred HHHHHHhhhCCcEEEeCceEeec
Q 012426 156 YATHKFFQENGFIWISSPIITAS 178 (464)
Q Consensus 156 ~~~r~ff~~~gF~EV~TP~L~~~ 178 (464)
+.+|++|...||.|+-|-.+++.
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~ 520 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSS 520 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCH
Confidence 57899999999999999999876
No 225
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.84 E-value=64 Score=29.25 Aligned_cols=38 Identities=13% Similarity=0.404 Sum_probs=28.8
Q ss_pred hcCCCCCCcEEEEEEEEEeCC----CC--CceEEEEEeeEEEEecC
Q 012426 76 KSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (464)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~----~~--~~~~el~~~~i~vls~~ 115 (464)
+. |.+|+.|.|+|.+.... .+ ...++|.|++|..|...
T Consensus 67 ~~--l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 67 QY--LKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred Hh--CCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 45 99999999999998652 22 23588899998877654
No 226
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=43.41 E-value=2e+02 Score=34.76 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=52.7
Q ss_pred CCCEEEEEEEEeeeec----CCC-eEEEEEEeCcCCcceEEEEeC-CccchhhhhcCCCCCCcEEEEEEEEEeCCCCCce
Q 012426 28 VGLMIVVAGWVRTLRA----QSS-VTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~----~g~-~~Fi~LrD~sg~~~iQvv~~~-~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (464)
....|+|.|.|-.+-. .|+ +.-+.|.|.+.. |.|..=. +....+.+.. |..|++|.|.|.+.-..-. ++
T Consensus 6 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~d~~~s--~~~k~f~~~~~~~~~~~~--~~~g~~~~~~g~~~~d~~~-~~ 80 (1213)
T TIGR01405 6 EENRVKIEGYIFKIEIKELKSGRTLLKIKVTDYTDS--LILKKFLKSEEDPEKFDG--IKIGKWVRARGKIELDNFS-RD 80 (1213)
T ss_pred cCCeEEEEEEEEEEEeEeccCCCEEEEEEEEcCCCC--EEEEEecccccchHHHhh--cCCCcEEEEEEEEeccCCC-Cc
Confidence 3568999999976532 244 445789998864 5543322 2122233556 9999999999999765432 34
Q ss_pred EEEEEeeEEEEe
Q 012426 102 VELKVNKIVLVG 113 (464)
Q Consensus 102 ~el~~~~i~vls 113 (464)
+.+.+..+..+.
T Consensus 81 ~~~~~~~~~~~~ 92 (1213)
T TIGR01405 81 LQMIIKDIEEIP 92 (1213)
T ss_pred eEEEeeeeeecC
Confidence 777777776543
No 227
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=42.68 E-value=49 Score=30.09 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=28.0
Q ss_pred CCCCcEEEEEEEEEeCC----CC--CceEEEEEeeEEEEecC
Q 012426 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~el~~~~i~vls~~ 115 (464)
|.+||.|.|+|.+.... .+ ...++|.|++|.+|+-.
T Consensus 61 L~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 61 LKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred CCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 99999999999998653 12 13588999999988554
No 228
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=42.60 E-value=2.4e+02 Score=25.76 Aligned_cols=35 Identities=14% Similarity=0.394 Sum_probs=24.3
Q ss_pred CCCCcEEEEEEEEEeCC----CCC--ceEEEEEeeE----EEEec
Q 012426 80 ITTGASIWIQGNVVPSQ----GSK--QKVELKVNKI----VLVGK 114 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~~--~~~el~~~~i----~vls~ 114 (464)
|++|+.|.|+|.+..+. .++ ..+||.+++| +.|.+
T Consensus 72 LkKG~~V~VeGrL~~r~w~dkdG~~r~~~eIiv~~~~~~l~~l~~ 116 (166)
T PRK06341 72 LKKGAKVYIEGQLQTRKWTDQSGVERYSTEVVLQGFNSTLTMLDG 116 (166)
T ss_pred cCCCCEEEEEEEEEeCcEECCCCCEEEEEEEEEEecccceEEccc
Confidence 99999999999997653 222 3477777653 55554
No 229
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=42.16 E-value=60 Score=25.10 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=32.0
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc------chhhh-hcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE------GYDQV-KSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~------~~~~~-~~~~l~~g~~V~V~ 89 (464)
.|.|.|.++...| +|++|..+ +...+..... ....+ +. ++.|+.|.+.
T Consensus 6 ~V~g~V~~i~~~G--~fV~l~~~-----v~G~v~~~~ls~~~~~~~~~~~~~--~~~G~~v~~k 60 (74)
T cd05705 6 LLRGYVSSVTKQG--VFFRLSSS-----IVGRVLFQNVTKYFVSDPSLYNKY--LPEGKLLTAK 60 (74)
T ss_pred EEEEEEEEEeCCc--EEEEeCCC-----CEEEEEHHHccCccccChhhHhcc--cCCCCEEEEE
Confidence 5789999998877 99999653 5556653221 11112 34 8999998865
No 230
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=41.90 E-value=1.5e+02 Score=22.27 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=31.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc--ch-hh-hhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQ-VKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~--~~-~~-~~~~~l~~g~~V~V~ 89 (464)
.+.|+|.++...| +|++|.+. .+..++..... .+ .. -.. +++||.|.|.
T Consensus 5 ~v~g~V~~i~~~g--~~v~l~~~----~~~g~i~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 57 (77)
T cd05708 5 KIDGTVRRVEDYG--VFIDIDGT----NVSGLCHKSEISDNRVADASKL--FRVGDKVRAK 57 (77)
T ss_pred EEEEEEEEEEcce--EEEEECCC----CeEEEEEHHHCCCCccCCHhHe--ecCCCEEEEE
Confidence 4799999998877 89998752 14555553321 11 11 134 7999999876
No 231
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=41.01 E-value=11 Score=40.33 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=34.1
Q ss_pred EEEeeCC----ccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhhh---HhhhhcCCCCCCC
Q 012426 401 MDMLVPR----IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSG---LVFILIKVTNFLN 463 (464)
Q Consensus 401 fdl~~~G----igEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~g---L~mll~~~~~I~~ 463 (464)
.|.+++| | ||.|++. -+|+.| +..|++ +.+ ..+.||+| |+|+..|.++||+
T Consensus 429 v~v~~~~~gkWI-EIgg~Gm--~rpevL----~~~Gi~-~~~----~~~A~GlGleRlaMi~ygi~DIR~ 486 (494)
T PTZ00326 429 IFGYHPGLKKWV-EVGNSGI--FRPEML----RPMGFP-EDV----TVIAWGLSLERPTMIKYGIKNIRD 486 (494)
T ss_pred EEEEecCCCcEE-EEeCcCc--cCHHHH----HhcCCC-Ccc----eEEEEEecHHHHHHHHhCCcHHHH
Confidence 4455553 5 7766553 444444 456773 332 35688999 9999999999996
No 232
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=40.64 E-value=52 Score=29.99 Aligned_cols=36 Identities=14% Similarity=0.424 Sum_probs=28.7
Q ss_pred CCCCcEEEEEEEEEeCC----CC--CceEEEEEeeEEEEecC
Q 012426 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~el~~~~i~vls~~ 115 (464)
|..||.|.|+|.+.... .+ ...+||.+++|.+|+..
T Consensus 70 L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 70 LRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred cCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 99999999999997652 12 13589999999998764
No 233
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=40.31 E-value=72 Score=36.54 Aligned_cols=32 Identities=6% Similarity=-0.021 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeec
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITAS 178 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~ 178 (464)
.......+.+.+|++|...||.||-|-.+++.
T Consensus 485 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~ 516 (791)
T PRK00629 485 GLTEAQRLLRRLRRALAALGYQEVITYSFVSP 516 (791)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcEEeccccCCH
Confidence 34445566688999999999999999999875
No 234
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=40.25 E-value=8.4 Score=39.29 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=32.6
Q ss_pred ccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhhh---HhhhhcCCCCCCC
Q 012426 410 ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSG---LVFILIKVTNFLN 463 (464)
Q Consensus 410 Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~g---L~mll~~~~~I~~ 463 (464)
||+|++. -+|..| +..|+|++.|. .+.||+| |+|+..|.++||+
T Consensus 281 EilG~Gm--v~p~vl----~~~gid~~~~~----G~AfG~GleRlaMl~ygi~DiR~ 327 (339)
T PRK00488 281 EILGCGM--VHPNVL----RNVGIDPEEYS----GFAFGMGIERLAMLKYGIDDIRL 327 (339)
T ss_pred EEeccCc--cCHHHH----HHcCCCcccce----EEEEeecHHHHHHHHhCCcHHHH
Confidence 6665553 345555 56799987664 3478999 9999999999985
No 235
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=39.71 E-value=63 Score=36.12 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeec
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITAS 178 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~ 178 (464)
.-..+...+.+|++|...||.||-|-.|++.
T Consensus 350 ~~~~~~~~r~vr~~l~~~G~~Evitysl~s~ 380 (650)
T COG0072 350 LTPLQKFRRKVRRALVGLGFQEVITYSLTSP 380 (650)
T ss_pred CChHHHHHHHHHHHHHhCCcceEeeeccCCH
Confidence 4456677888999999999999999999885
No 236
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=39.26 E-value=16 Score=38.75 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=37.2
Q ss_pred eeEEEeeCCcc--ccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhhh---HhhhhcCCCCCCC
Q 012426 399 AAMDMLVPRIG--ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSG---LVFILIKVTNFLN 463 (464)
Q Consensus 399 ~~fdl~~~Gig--Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~g---L~mll~~~~~I~~ 463 (464)
.-.|+.++| + ||+|++. -+++.| +..|++++.+- .+.+|+| |+|+..|.++||.
T Consensus 279 ~evdi~~~g-~WiEi~gcG~--v~p~vl----~~~g~~~~~~~----g~AfGiGleRlaMl~~gi~DiR~ 337 (460)
T TIGR00469 279 WEIEIWFKD-EWLELCGCGI--IRHDIL----LRAGVHPSETI----GWAFGLGLDRIAMLLFDIPDIRL 337 (460)
T ss_pred eEEEEEECC-eeEEEeeecc--CcHHHH----HHcCCCccceE----EEEEEecHHHHHHHHcCccHHHH
Confidence 346677777 5 8877664 234434 55788876532 2467888 9999999999984
No 237
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=38.95 E-value=76 Score=27.59 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=27.8
Q ss_pred CCCCcEEEEEEEEEeCCC---CC--ceEEEEEeeEEEEec
Q 012426 80 ITTGASIWIQGNVVPSQG---SK--QKVELKVNKIVLVGK 114 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~~---~~--~~~el~~~~i~vls~ 114 (464)
|.+||.|.|+|.+....= ++ ..+||.++++.+|..
T Consensus 65 l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~ 104 (131)
T PRK07274 65 ASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLES 104 (131)
T ss_pred cCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcC
Confidence 999999999999986632 21 247899999998864
No 238
>COG3390 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.17 E-value=1.5e+02 Score=27.54 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=45.0
Q ss_pred CEEEEEEEEeeeecCC---CeEEEEEEeCcCCcceEEEEeCCc-cchhhhhcCCCCCCcEEEEEEEEEeCC
Q 012426 30 LMIVVAGWVRTLRAQS---SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 30 ~~V~v~GwV~~iR~~g---~~~Fi~LrD~sg~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
+.|-|.|-+.+.-.-| .+.=+.+.|++|. +=|+...-. +....++. +..+|.|.|.|++..=.
T Consensus 46 nRifivGtltek~~i~ed~~~~R~rVvDpTGs--F~Vyag~yqPEa~a~l~~--ve~~~~VaViGKi~~y~ 112 (196)
T COG3390 46 NRIFIVGTLTEKEGIGEDREYWRIRVVDPTGS--FYVYAGQYQPEAKAFLED--VEVPDLVAVIGKIRTYR 112 (196)
T ss_pred eEEEEEEEEEeccCcCCcccEEEEEEecCCce--EEEEcCCCChHHHHHHHh--ccCCceEEEecccceee
Confidence 4678889888876655 4777889999984 555433222 23444777 99999999999987543
No 239
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=37.69 E-value=1.1e+02 Score=34.52 Aligned_cols=30 Identities=3% Similarity=0.052 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHhhhCCcEEEeCceEeec
Q 012426 149 RVRNALAYATHKFFQENGFIWISSPIITAS 178 (464)
Q Consensus 149 ~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~ 178 (464)
.....+.+.+|++|...||.|+-|-.+++.
T Consensus 398 ~~~~~~~~~ir~~L~~~Gf~Evitysf~s~ 427 (704)
T CHL00192 398 DIDYNTRDKIRSYLRNLGLTELIHYSLVKQ 427 (704)
T ss_pred CHHHHHHHHHHHHHHhCCCceEecccccCh
Confidence 345566788999999999999999999876
No 240
>PF09104 BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide-binding, domain 3; InterPro: IPR015188 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel. OB3 has a pronounced groove formed by one face of the curved sheet and is demarcated by two loops, one between beta 1 and beta 2 and another between beta 4 and beta 5, which allows for strong ssDNA binding []. ; PDB: 1IYJ_D 1MIU_A.
Probab=37.10 E-value=3e+02 Score=24.49 Aligned_cols=86 Identities=8% Similarity=0.069 Sum_probs=48.9
Q ss_pred CCCEEEEEEEEeeeecCCCe-EEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEE
Q 012426 28 VGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~g~~-~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~ 106 (464)
.=.+|=+-|-|.++.+..++ .-+-|.|... .-+.|.+..+...|.--.- |++|.+|.++----++....+--.+.+
T Consensus 17 p~~EvD~VG~VvsV~~~~~f~~~vYLsD~~~-Nll~Ikfw~~l~~~~~eDi--lk~~~liA~SNLqwR~~s~s~iP~~~A 93 (143)
T PF09104_consen 17 PYGEVDTVGFVVSVSKKQGFQPLVYLSDECH-NLLAIKFWTGLNQYGYEDI--LKPGSLIAASNLQWRPESTSGIPTLFA 93 (143)
T ss_dssp CCCEEEEEEEEEEEE--TTS--EEEEE-TTS--EEEEEESS-------SS-----TT-EEEEEEEEE-S-TTSSS-EEEE
T ss_pred CccccceEEEEEEEEecCCCceeEEeecCCc-cEEEEEeccCccccchhhh--cCcceEEEEeeeEeecccccCCCeeEe
Confidence 34678899999999775444 3366889875 3477777766543321123 899999999976666554444467889
Q ss_pred eeEEEEecCC
Q 012426 107 NKIVLVGKSD 116 (464)
Q Consensus 107 ~~i~vls~~~ 116 (464)
.++.+.+.++
T Consensus 94 ~d~S~FS~nP 103 (143)
T PF09104_consen 94 TDLSVFSANP 103 (143)
T ss_dssp ECCEEEESS-
T ss_pred ccceeeecCc
Confidence 9999999864
No 241
>KOG1894 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.10 E-value=37 Score=34.25 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHhhhCCcEEEeCceEeecCC----CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 012426 149 RVRNALAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (464)
Q Consensus 149 ~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~----eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (464)
..+..--.+.++-|+.++ |++||.|+...+ +.++..|.+ ++..|++.
T Consensus 104 ~~~~~~k~a~~el~r~kd--e~ntp~l~qr~s~s~~~~~~n~qsI---------------------------y~~~~~D~ 154 (412)
T KOG1894|consen 104 EEADRPKYALQELFRLKD--ESNTPVLQQRLSASAFGAIANIQSI---------------------------YNQGFYDQ 154 (412)
T ss_pred chhhhhhHHHHHHHHHhh--ccCChHHhhcccccchhhcccceee---------------------------ccCCccCC
Confidence 333344456677777666 999999986432 345556655 12345665
Q ss_pred ---ccccccchhHHHHHHhhc-------cCceEE---EccccccCCC
Q 012426 225 ---PAFLTVSGQLNAETYATA-------LSNVYT---FGPTFRAENS 258 (464)
Q Consensus 225 ---~~yL~~Spql~lqll~~g-------~~rVfe---I~~~FR~E~~ 258 (464)
++-|.+|+-+++++.--| ...|++ +++.|=||.-
T Consensus 155 ~~~~laL~i~~i~~k~~krv~f~d~a~e~~~v~s~~tl~~l~~ne~d 201 (412)
T KOG1894|consen 155 EDVVLALPISKIFFKDLKRVGFDDNAPEQLEVVSGRTLSNLFYNETD 201 (412)
T ss_pred CCccccccHhhhhhhhhhhhcCCccchhhheeeccccccccccCcch
Confidence 788999999998764333 356666 7778888754
No 242
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=36.70 E-value=1.1e+02 Score=29.40 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=50.8
Q ss_pred CCEEEEEEEEeee---ecC--C-CeEEEEEEeCcC---CcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCC---
Q 012426 29 GLMIVVAGWVRTL---RAQ--S-SVTFIEVNDGSC---LSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ--- 96 (464)
Q Consensus 29 ~~~V~v~GwV~~i---R~~--g-~~~Fi~LrD~sg---~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~--- 96 (464)
-..|.+.|+|.+- |.. | .++-+.|.-... ..-+.|++-.+... .+.. |.+||-|.|.|.+....
T Consensus 109 ~N~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~~td~i~~v~wg~~Ae--~~~~--l~KG~~V~V~GrL~sr~y~~ 184 (219)
T PRK05813 109 PNEIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYNKSDYIPCIAWGRNAR--FCKT--LEVGDNIRVWGRVQSREYQK 184 (219)
T ss_pred ccEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCCCceEEEEEEEhHHhH--HHhh--CCCCCEEEEEEEEEecceEc
Confidence 4568888888543 432 3 344444432110 01266666543221 2445 99999999999998652
Q ss_pred -CC------CceEEEEEeeEEEEecCC
Q 012426 97 -GS------KQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 97 -~~------~~~~el~~~~i~vls~~~ 116 (464)
.+ -..+||.+++++.|++..
T Consensus 185 k~g~~~g~kr~~~eV~v~~i~~l~~~~ 211 (219)
T PRK05813 185 KLSEGEVVTKVAYEVSISKMEKVEKEE 211 (219)
T ss_pred CCCCccceEEEEEEEEEEEEEEcCChh
Confidence 11 125899999999987743
No 243
>PRK08059 general stress protein 13; Validated
Probab=36.56 E-value=1.5e+02 Score=25.30 Aligned_cols=64 Identities=17% Similarity=0.387 Sum_probs=38.3
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc--h-hhh-hcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y-DQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~--~-~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
.+.|.|.++...| +|++|.++ ++.++...... + ... .. +..||.|.|. +.......+.+.+.+.
T Consensus 10 iv~G~V~~i~~~G--~fV~i~~~-----~~Gli~~sel~~~~~~~~~~~--~~vGD~I~vk--I~~id~~~~~i~lslk 77 (123)
T PRK08059 10 VVTGKVTGIQPYG--AFVALDEE-----TQGLVHISEITHGFVKDIHDF--LSVGDEVKVK--VLSVDEEKGKISLSIR 77 (123)
T ss_pred EEEEEEEEEecce--EEEEECCC-----CEEEEEHHHCCcccccCHHHc--CCCCCEEEEE--EEEEECCCCeEEEEEE
Confidence 5789999999887 89998654 45565533211 1 111 23 7999999986 4333222233555543
No 244
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=35.87 E-value=27 Score=37.21 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=30.2
Q ss_pred ccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhhh---HhhhhcCCCCCCC
Q 012426 410 ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSG---LVFILIKVTNFLN 463 (464)
Q Consensus 410 Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~g---L~mll~~~~~I~~ 463 (464)
||++.+ +-.|+.| +..|+++.. +.||+| |+|+..|.++||+
T Consensus 296 EIgG~G--mVhPeVL----~~~GId~PV-------~AFGIGVERlAMi~ygi~DIR~ 339 (533)
T TIGR00470 296 EVATFG--VYSPIAL----AKYNIDVPV-------MNLGLGVERLAMILYGYEDVRA 339 (533)
T ss_pred EEEecc--ccCHHHH----HHcCCCCce-------EEEEecHHHHHHHHhCCcHHHh
Confidence 775444 3456655 557887654 577888 9999999999996
No 245
>PRK06386 replication factor A; Reviewed
Probab=34.36 E-value=2.9e+02 Score=28.56 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=47.7
Q ss_pred CCEEEEEEEEeeee-----cC-C--CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCc
Q 012426 29 GLMIVVAGWVRTLR-----AQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (464)
Q Consensus 29 ~~~V~v~GwV~~iR-----~~-g--~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~ 100 (464)
++.|+|.|+|.++- .. | .+.=..|-|.||. |..++.... .. |..|++|.+.+-..+.-.+
T Consensus 12 ~~~V~v~akVl~~~~r~i~~~~g~~~~~~gllgDeTG~--I~fT~W~~~------~~--l~~Gd~v~i~na~v~~~~G-- 79 (358)
T PRK06386 12 RQNVDLKVKVLSLNKRTIKNDRGETIYYYGIIGDETGT--VPFTAWEFP------DA--VKSGDVIEIKYCYSKEYNG-- 79 (358)
T ss_pred CCcEEEEEEEEEccceEEecCCCCeEEEEEEEECCcce--EEEEecCCc------cc--CCCCCEEEEEeEEEeeECC--
Confidence 56688888887553 11 2 2444568888874 877776431 24 8999999999988776544
Q ss_pred eEEEEEeeEE
Q 012426 101 KVELKVNKIV 110 (464)
Q Consensus 101 ~~el~~~~i~ 110 (464)
.++|.+.+..
T Consensus 80 ~~~Lnv~~~t 89 (358)
T PRK06386 80 KIRIYFDSRS 89 (358)
T ss_pred EEEEEEcCce
Confidence 4788886443
No 246
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=33.85 E-value=83 Score=28.09 Aligned_cols=36 Identities=6% Similarity=0.271 Sum_probs=27.7
Q ss_pred CCCCcEEEEEEEEEeCC----CC--CceEEEEEeeEEEEecC
Q 012426 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~el~~~~i~vls~~ 115 (464)
|.+||.|.|+|.+.... .+ ...++|.+++|.++...
T Consensus 72 l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~r 113 (148)
T PRK08182 72 YQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPYR 113 (148)
T ss_pred cCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCCc
Confidence 99999999999998653 11 13588999999887643
No 247
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=33.63 E-value=2e+02 Score=21.25 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=35.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
.+.|.|.++...|..+-+.++-+.+ ..+.+.++.+. +....|..|+-|.+.
T Consensus 8 ~l~g~I~~i~~~g~~~~v~l~~~~~-~~l~a~i~~~~-----~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGDVNAEVDLLLGGG-TKLTAVITLES-----VAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC-CEEEEEecHHH-----HhhCCCCCCCEEEEE
Confidence 6889999998888777777776543 14777766532 221128899998875
No 248
>PRK07252 hypothetical protein; Provisional
Probab=33.36 E-value=3.1e+02 Score=23.46 Aligned_cols=48 Identities=13% Similarity=0.339 Sum_probs=32.0
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhhh-hcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~~-~~~~l~~g~~V~V~ 89 (464)
.+.|.|.++...| +|++|..+ +...+..... .+... .. +.+||.|.|.
T Consensus 6 iv~G~V~~V~~~G--~fVei~~~-----~~GllhiseLs~~~~~~~~~~--~~vGD~V~Vk 57 (120)
T PRK07252 6 KLKGTITGIKPYG--AFVALENG-----TTGLIHISEIKTGFIDNIHQL--LKVGEEVLVQ 57 (120)
T ss_pred EEEEEEEEEeCcE--EEEEECCC-----CEEEEEHHHcCCccccChhhc--cCCCCEEEEE
Confidence 4799999999887 88888543 4455553321 11122 33 8999999986
No 249
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=33.30 E-value=1.9e+02 Score=22.49 Aligned_cols=51 Identities=22% Similarity=0.368 Sum_probs=34.2
Q ss_pred CCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc---hhh-hhcCCCCCCcEEEEE
Q 012426 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQ-VKSGLITTGASIWIQ 89 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~---~~~-~~~~~l~~g~~V~V~ 89 (464)
.|+ .+.|.|.++...| +|++|-++ ++..++..... +.. -.. ++.||.|.|.
T Consensus 14 ~G~--i~~g~V~~v~~~G--~fv~l~~~-----~~g~v~~~el~~~~~~~~~~~--~~~Gd~v~vk 68 (83)
T cd04461 14 PGM--VVHGYVRNITPYG--VFVEFLGG-----LTGLAPKSYISDEFVTDPSFG--FKKGQSVTAK 68 (83)
T ss_pred CCC--EEEEEEEEEeece--EEEEcCCC-----CEEEEEHHHCCcccccCHHHh--cCCCCEEEEE
Confidence 454 4579999999888 89998643 56777644311 111 234 8999999886
No 250
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=31.62 E-value=2e+02 Score=20.73 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=31.0
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc--h--hhhhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y--DQVKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~--~--~~~~~~~l~~g~~V~V~ 89 (464)
.+.|.|..+...| +|+.|.++ ++..+...... + ..-+. ++.||.|.|.
T Consensus 3 ~~~g~V~~i~~~g--~~v~i~~~-----~~g~l~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 54 (69)
T cd05692 3 VVEGTVTRLKPFG--AFVELGGG-----ISGLVHISQIAHKRVKDVKDV--LKEGDKVKVK 54 (69)
T ss_pred EEEEEEEEEEeee--EEEEECCC-----CEEEEEhHHcCCcccCCHHHc--cCCCCEEEEE
Confidence 4688999988876 88888643 45566543211 1 11134 8999999876
No 251
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=31.61 E-value=99 Score=26.86 Aligned_cols=50 Identities=16% Similarity=0.464 Sum_probs=34.8
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCc-CCcceEEEEeCCccch-hhhhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGS-CLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~s-g~~~iQvv~~~~~~~~-~~~~~~~l~~g~~V~V~ 89 (464)
.+.|.|..|-..| +|+.|-.|+ |+ |- ++.-..+| +.+.. .|..|+-|.|.
T Consensus 8 ~l~GkItgI~~yG--AFV~l~~g~tGL--VH--ISEIa~~fVkdI~d-~L~vG~eV~vK 59 (129)
T COG1098 8 KLKGKITGITPYG--AFVELEGGKTGL--VH--ISEIADGFVKDIHD-HLKVGQEVKVK 59 (129)
T ss_pred eEEEEEEeeEecc--eEEEecCCCcce--EE--ehHhhhhhHHhHHH-HhcCCCEEEEE
Confidence 5789999999999 999999975 33 22 23222334 33432 39999999987
No 252
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=31.29 E-value=37 Score=36.53 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=24.9
Q ss_pred ceEEEccccccCCCC--CccccccchhccceeccCC
Q 012426 245 NVYTFGPTFRAENSN--TSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 245 rVfeI~~~FR~E~~~--t~rHl~EFtmlE~e~a~~~ 278 (464)
.|-|||++||||=+- .---+-||+|.|+|. |.+
T Consensus 189 giaQIGKsfRNEISPr~gl~R~REF~QaEiE~-Fv~ 223 (558)
T COG0423 189 GIAQIGKSFRNEISPRNGLFRTREFEQAEIEF-FVD 223 (558)
T ss_pred EEEeechhhccccCcccceeehhhhhhhheee-EEC
Confidence 489999999999651 122467999999997 543
No 253
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=31.21 E-value=85 Score=28.93 Aligned_cols=37 Identities=19% Similarity=0.505 Sum_probs=28.1
Q ss_pred CCCCcEEEEEEEEEeCC---CC--CceEEEEEe---eEEEEecCC
Q 012426 80 ITTGASIWIQGNVVPSQ---GS--KQKVELKVN---KIVLVGKSD 116 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~---~~--~~~~el~~~---~i~vls~~~ 116 (464)
|.+||.|.|+|.+.... .+ ....||.|+ ++.+|++..
T Consensus 72 L~KG~~V~VeGrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~~ 116 (175)
T PRK13732 72 LRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAP 116 (175)
T ss_pred cCCCCEEEEEEEEEeeeEccCCeEEEEEEEEEeecCeEEEecCCC
Confidence 99999999999987542 12 134788888 888887764
No 254
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=30.48 E-value=2.2e+02 Score=20.77 Aligned_cols=51 Identities=12% Similarity=0.307 Sum_probs=36.9
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
.+.|.|..+...|...++.++-+.+ ..|-+.++... +..+ . |.+||-|.+.
T Consensus 6 ~l~g~V~~ie~~g~~~~v~~~~~~~-~~l~a~it~~~--~~~L-~--L~~G~~V~~~ 56 (64)
T PF03459_consen 6 QLPGTVESIENLGSEVEVTLDLGGG-ETLTARITPES--AEEL-G--LKPGDEVYAS 56 (64)
T ss_dssp EEEEEEEEEEESSSEEEEEEEETTS-EEEEEEEEHHH--HHHC-T---STT-EEEEE
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC-CEEEEEEcHHH--HHHc-C--CCCCCEEEEE
Confidence 6889999999999999999998875 24777776532 1111 2 8999999875
No 255
>PRK05807 hypothetical protein; Provisional
Probab=29.55 E-value=3.8e+02 Score=23.40 Aligned_cols=65 Identities=15% Similarity=0.374 Sum_probs=39.5
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc--ch-hhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~--~~-~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i 109 (464)
.+.|.|..+...| +|+.| ++ .+.++..... .| ..+.. .+.+||.|.|. |..... .+.++|....+
T Consensus 8 vv~G~Vt~i~~~G--afV~L-~~-----~~Glvhiseis~~~v~~~~~-~~kvGd~V~Vk--V~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 8 ILEGTVVNITNFG--AFVEV-EG-----KTGLVHISEVADTYVKDIRE-HLKEQDKVKVK--VISIDD-NGKISLSIKQA 75 (136)
T ss_pred EEEEEEEEEECCe--EEEEE-CC-----EEEEEEhhhcccccccCccc-cCCCCCEEEEE--EEEECC-CCcEEEEEEec
Confidence 6789999998887 99999 43 3556554321 12 11221 38999999876 433322 24466665543
No 256
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=28.95 E-value=1.5e+02 Score=21.61 Aligned_cols=48 Identities=13% Similarity=0.287 Sum_probs=31.2
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc---hhh-hhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQ-VKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~---~~~-~~~~~l~~g~~V~V~ 89 (464)
.+.|.|.++...| +|++|.++ +...+...... +.. -+. ++.||.|.|.
T Consensus 3 ~~~g~V~~v~~~G--~~v~l~~~-----~~g~l~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 54 (68)
T cd04472 3 IYEGKVVKIKDFG--AFVEILPG-----KDGLVHISELSDERVEKVEDV--LKVGDEVKVK 54 (68)
T ss_pred EEEEEEEEEEEeE--EEEEeCCC-----CEEEEEhHHcCCccccCHHHc--cCCCCEEEEE
Confidence 4689999999877 88988754 34555543211 111 123 7999999886
No 257
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=28.95 E-value=28 Score=35.83 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=46.3
Q ss_pred ccchhHHHHH-Hhhc-c-------------CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHH
Q 012426 229 TVSGQLNAET-YATA-L-------------SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQ 291 (464)
Q Consensus 229 ~~Spql~lql-l~~g-~-------------~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~ 291 (464)
.+|+-+-|+. |.+| | =+.|+|.+|||.|.-....||--+++--.-.... +.++--.++|.|++
T Consensus 178 p~s~tlTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~ 257 (536)
T COG2024 178 PESSTLTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLR 257 (536)
T ss_pred CCCCceehhhhcccceeeeHHHHHhccCCCceeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccHHHHHHHHH
Confidence 4577777763 4444 1 3789999999999876788997777666555554 36677778888886
Q ss_pred HH
Q 012426 292 YV 293 (464)
Q Consensus 292 ~i 293 (464)
..
T Consensus 258 qf 259 (536)
T COG2024 258 QF 259 (536)
T ss_pred Hh
Confidence 65
No 258
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=28.22 E-value=1.6e+02 Score=27.76 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=38.5
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeC
Q 012426 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (464)
Q Consensus 30 ~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~ 95 (464)
..-++.|||..+-. +..+|...... +++|+.++... . +.+||.|.|+|.+.+.
T Consensus 38 n~~tiEGrVvEV~~--~~i~iesk~yn--~~v~i~~d~~~-------n--vKVGD~VKaTG~m~rn 90 (213)
T PRK06763 38 NFSTIEGRVVEVDN--GVIVIKSKQYE--EPVSVYIDSLS-------N--VKVGDEVKATGSMMRN 90 (213)
T ss_pred ccceeeeEEEEEeC--CEEEEEeccCC--CceEEEecCCC-------C--cccCcEEEEchHHHHh
Confidence 34589999988874 34555555544 57999987652 3 8999999999986554
No 259
>PF03843 Slp: Outer membrane lipoprotein Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane
Probab=27.85 E-value=2.3e+02 Score=25.64 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=46.8
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEe----CcCC--------cceEEEEeCCccchhhhhcCC
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVND----GSCL--------SNMQCVMTSDAEGYDQVKSGL 79 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD----~sg~--------~~iQvv~~~~~~~~~~~~~~~ 79 (464)
.+.+++.+.. +...|+.|...|.|.++++..+-+.|+|-. .++. .++=+.++ .|=.=..
T Consensus 20 ~~~~~v~~~p---~~~~G~~VrwGG~I~~v~n~~~~T~leV~~~PLd~~grP~~~~~s~GRFla~~~----gFLDP~~-- 90 (160)
T PF03843_consen 20 PSFSQVRANP---DAYQGQQVRWGGVIVNVRNLPDQTELEVVQYPLDSSGRPQTDDPSQGRFLARVP----GFLDPAI-- 90 (160)
T ss_pred CCHHHHHhCh---hhcCCCEEEECCEEEEEEECCCceEEEEEEccCCCCCCcCCCCCCCCEEEEEeC----CCcCHHH--
Confidence 4444454432 246799999999999999987777777654 1111 01111111 1111123
Q ss_pred CCCCcEEEEEEEEEeCCC
Q 012426 80 ITTGASIWIQGNVVPSQG 97 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~~ 97 (464)
...|-.|.|.|++.....
T Consensus 91 y~~Gr~vTV~G~v~g~~~ 108 (160)
T PF03843_consen 91 YAPGRLVTVVGTVTGMET 108 (160)
T ss_pred cCCCCEEEEEEEecceEE
Confidence 778999999999987653
No 260
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=27.58 E-value=1.1e+02 Score=28.17 Aligned_cols=36 Identities=19% Similarity=0.466 Sum_probs=25.6
Q ss_pred CCCCcEEEEEEEEEeCCC----CC--ceEEEEEe---eEEEEecC
Q 012426 80 ITTGASIWIQGNVVPSQG----SK--QKVELKVN---KIVLVGKS 115 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~~----~~--~~~el~~~---~i~vls~~ 115 (464)
|.+||.|.|+|.+....= ++ ..+||.+. ++++|++.
T Consensus 72 L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 72 LRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred cCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccCC
Confidence 999999999999986531 11 24677665 67777653
No 261
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.40 E-value=52 Score=34.86 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD 179 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~ 179 (464)
..--++-++++..+|.=...+||.||-||.|-...
T Consensus 189 P~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~ 223 (560)
T KOG1637|consen 189 PHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKK 223 (560)
T ss_pred cCcchHHHHHHHHHHHHHHhcCCceecCcchhhhh
Confidence 44568889999999999999999999999997643
No 262
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=26.39 E-value=2.9e+02 Score=21.01 Aligned_cols=48 Identities=10% Similarity=0.228 Sum_probs=32.9
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc-----hhh-hhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-----YDQ-VKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~-----~~~-~~~~~l~~g~~V~V~ 89 (464)
.|.|.|.++-+.| +|+.|.++ |...+...... .+. .+. +++|+.|.+.
T Consensus 3 ~V~g~V~~i~~~g--~~V~l~~~-----i~G~i~~~~ls~~~~~~~~~~~~--~~vG~~v~~k 56 (73)
T cd05703 3 EVTGFVNNVSKEF--VWLTISPD-----VKGRIPLLDLSDDVSVLEHPEKK--FPIGQALKAK 56 (73)
T ss_pred EEEEEEEEEeCCE--EEEEeCCC-----cEEEEEHHHcCCccccccCHHHh--CCCCCEEEEE
Confidence 4789999998776 99999663 66677643211 112 345 9999998876
No 263
>cd04477 RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA1N is known to specifically interact with the p53 tumor suppressor, DNA polymerase alpha, and transcription factors. In addition to RPA1N, RPA1 contains three other OB folds: ssDNA-binding domain (DBD)-A, DBD-B, and DBD-C.
Probab=26.06 E-value=73 Score=26.29 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=35.4
Q ss_pred EEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEE
Q 012426 50 IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (464)
Q Consensus 50 i~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vl 112 (464)
+.|+||.. .+|.++...... .+..|.|.+|++|.+.=....+-.+. --|.+.+++|+
T Consensus 40 i~lSDG~~--~~~amLatqln~--~v~~g~l~~~sIirl~~y~~~~i~~k--~viiIldlevl 96 (97)
T cd04477 40 ILLSDGVY--YVQAMLATQLNP--LVESGQLQRGSIIRLKRFICNVIKGK--RILIILDLEVV 96 (97)
T ss_pred EEEEChhH--HHHHHHhhhhhh--HHhcCCccCCcEEEECeEEEEEecCc--EEEEEEeeEEe
Confidence 66999975 489998865422 23445699999999954333322122 24555666665
No 264
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=26.01 E-value=1.6e+02 Score=22.04 Aligned_cols=48 Identities=17% Similarity=0.348 Sum_probs=30.0
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccch-----hhhhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-----DQVKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~-----~~~~~~~l~~g~~V~V~ 89 (464)
.+.|+|.++...| +|+.|.++ +...+......+ +.-+. ++.||.|.|.
T Consensus 6 ~~~g~V~~i~~~G--~fv~l~~~-----~~Gl~~~~~l~~~~~~~~~~~~--~~~Gd~v~v~ 58 (72)
T cd05689 6 RLFGKVTNLTDYG--CFVELEEG-----VEGLVHVSEMDWTNKNIHPSKV--VSLGDEVEVM 58 (72)
T ss_pred EEEEEEEEEEeeE--EEEEcCCC-----CEEEEEEEeccCcccccCcccE--eCCCCEEEEE
Confidence 5899999999988 89999763 334444222111 11123 6778877775
No 265
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=25.96 E-value=2.7e+02 Score=20.51 Aligned_cols=48 Identities=15% Similarity=0.358 Sum_probs=31.6
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc--cc-hhhh-hcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EG-YDQV-KSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~--~~-~~~~-~~~~l~~g~~V~V~ 89 (464)
.+.|.|.++...| +|++|..+ +..++.... .. +... +. ++.||.|.+.
T Consensus 3 ~v~g~V~~v~~~g--~~v~l~~~-----~~g~i~~~~~~~~~~~~~~~~--~~~Gd~v~~~ 54 (73)
T cd05691 3 IVTGKVTEVDAKG--ATVKLGDG-----VEGFLRAAELSRDRVEDATER--FKVGDEVEAK 54 (73)
T ss_pred EEEEEEEEEECCe--EEEEeCCC-----CEEEEEHHHCCCccccCHHHc--cCCCCEEEEE
Confidence 3679999998766 88988653 556665432 11 1122 33 8999998886
No 266
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=25.52 E-value=62 Score=35.38 Aligned_cols=30 Identities=40% Similarity=0.552 Sum_probs=24.0
Q ss_pred ceEEEccccccCCCCCcc----ccccchhccceeccC
Q 012426 245 NVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFA 277 (464)
Q Consensus 245 rVfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~a~~ 277 (464)
.+-|||++||||=+ +| -+-||+|.|+|- |.
T Consensus 185 giaQiGk~fRNEIs--Pr~~l~R~REF~q~EiE~-F~ 218 (551)
T TIGR00389 185 GVAQIGKSFRNEIS--PRNGLFRVREFEQAEIEF-FV 218 (551)
T ss_pred eehhhhHhhhcccC--cccceEEeehhhhchhhe-ec
Confidence 48899999999954 34 357999999997 54
No 267
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=25.21 E-value=1.6e+02 Score=22.06 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=33.4
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchh----hhhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD----QVKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~----~~~~~~l~~g~~V~V~ 89 (464)
.+.|+|.++...| +|++|..+ +.+.++....... .-.. +..|+.|.|.
T Consensus 7 iv~g~V~~v~~~g--~~V~l~~~-----~~g~ip~~~l~~~~~~~~~~~--~~~G~~v~v~ 58 (74)
T PF00575_consen 7 IVEGKVTSVEDFG--VFVDLGNG-----IEGFIPISELSDDRIDDPSEV--YKIGQTVRVK 58 (74)
T ss_dssp EEEEEEEEEETTE--EEEEESTS-----SEEEEEGGGSSSSEESSSHGT--CETTCEEEEE
T ss_pred EEEEEEEEEECCE--EEEEECCc-----EEEEEEeehhcCccccccccc--cCCCCEEEEE
Confidence 4689999999866 89998832 6678876542211 1234 8899998776
No 268
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=24.72 E-value=2.2e+02 Score=21.07 Aligned_cols=48 Identities=10% Similarity=0.217 Sum_probs=31.1
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchh---hh-hcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD---QV-KSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~---~~-~~~~l~~g~~V~V~ 89 (464)
.|.|.|.++...| +|++|..+ ...++........ .. .. +.+||.|.+.
T Consensus 3 iv~g~V~~i~~~~--~~v~l~~~-----~~g~l~~~e~~~~~~~~~~~~--~~~Gd~i~~~ 54 (70)
T cd05687 3 IVKGTVVSVDDDE--VLVDIGYK-----SEGIIPISEFSDDPIENGEDE--VKVGDEVEVY 54 (70)
T ss_pred EEEEEEEEEeCCE--EEEEeCCC-----ceEEEEHHHhCccccCCHhHc--CCCCCEEEEE
Confidence 4689999998754 89998332 5667765431111 11 23 8999998876
No 269
>PF14485 DUF4431: Domain of unknown function (DUF4431)
Probab=24.12 E-value=1.5e+02 Score=21.09 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=23.8
Q ss_pred eEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCC
Q 012426 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (464)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~ 98 (464)
+|++++.+ .++..+. -.|--|.|+|++.-..++
T Consensus 2 vQL~l~~~--~~~~~~~---~~Gk~V~V~G~l~~a~t~ 34 (48)
T PF14485_consen 2 VQLILSEE--DYSYLKS---LLGKRVSVTGKLFHAHTG 34 (48)
T ss_pred eEEEeChh--hhHHHHH---hcCCeEEEEEEEeeccCc
Confidence 89998543 3444443 578899999999987765
No 270
>PRK08582 hypothetical protein; Provisional
Probab=24.03 E-value=2.1e+02 Score=25.13 Aligned_cols=48 Identities=15% Similarity=0.363 Sum_probs=31.5
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc--ch-hhh-hcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQV-KSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~--~~-~~~-~~~~l~~g~~V~V~ 89 (464)
.+.|.|..+...| +||.|-++ +..++..... .+ ..+ .. +.+||.|.|.
T Consensus 8 iv~G~V~~I~~fG--~fV~L~~~-----~~GlVhiSels~~~v~~~~~~--l~vGD~Vkvk 59 (139)
T PRK08582 8 KLQGKVTGITNFG--AFVELPEG-----KTGLVHISEVADNYVKDINDH--LKVGDEVEVK 59 (139)
T ss_pred EEEEEEEEEECCe--EEEEECCC-----CEEEEEeeccCcccccccccc--cCCCCEEEEE
Confidence 3799999999988 99999664 3334432221 11 112 34 8999999876
No 271
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=23.74 E-value=2.9e+02 Score=27.16 Aligned_cols=51 Identities=10% Similarity=0.270 Sum_probs=35.0
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc---hhhhhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~---~~~~~~~~l~~g~~V~V~ 89 (464)
.|.|.|.++...| +|+.|.+-.+ ++.++...... +..+.. .++.||.|.|.
T Consensus 11 iV~G~V~~I~~~G--~fV~L~e~~g---ieGlI~iSEls~~~i~~i~~-~~kvGd~V~vk 64 (262)
T PRK03987 11 LVVGTVKEVKDFG--AFVTLDEYPG---KEGFIHISEVASGWVKNIRD-HVKEGQKVVCK 64 (262)
T ss_pred EEEEEEEEEECCE--EEEEECCCCC---cEEEEEHHHcCcccccCHHH-hCCCCCEEEEE
Confidence 5689999999887 9999987433 67777643211 111221 28999999886
No 272
>cd04493 BRCA2DBD_OB1 BRCA2DBD_OB1: A subfamily of OB folds corresponding to the first OB fold (OB1) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA). BRCA2DBD OB1 binds DNA weakly.
Probab=23.71 E-value=2.5e+02 Score=23.46 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=32.1
Q ss_pred CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEE
Q 012426 44 QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (464)
Q Consensus 44 ~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~ 91 (464)
.+....++|.||. ..|++.++... .+.+++|.|.+|.-+.|.|-
T Consensus 19 ~~~~~~lEltDGW--Ysi~a~lD~~L--~~~l~~gkl~vGqKL~i~GA 62 (100)
T cd04493 19 SPHMPIIELTDGW--YSIRAQLDPPL--TNLVRKGKLRVGQKLRICGA 62 (100)
T ss_pred CCcccEEEEecCe--EEEEEEeCHHH--HHHHHcCCeecccEEEEECc
Confidence 3457789999986 46999888643 23355556999999999873
No 273
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=22.77 E-value=4.6e+02 Score=25.04 Aligned_cols=81 Identities=10% Similarity=0.095 Sum_probs=49.8
Q ss_pred CCCEEEEEEEEeee---ec-CCCeEEEE-------EEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeC-
Q 012426 28 VGLMIVVAGWVRTL---RA-QSSVTFIE-------VNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS- 95 (464)
Q Consensus 28 ~~~~V~v~GwV~~i---R~-~g~~~Fi~-------LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~- 95 (464)
.+..|.+.|+|.+= |. ..+-.|.. +++.+. -|.|++..... .... +..|+.|.|+|.+..=
T Consensus 7 ~~NkV~L~Grl~~d~e~~~~~~G~~~~~f~laV~R~s~~~D--~i~v~v~~rla---e~~~--l~kG~~v~VeGqlrsy~ 79 (219)
T PRK05813 7 ENNKVYLEGKVVSELEFSHEMYGEGFYNFKLEVPRLSDSKD--ILPVTVSERLL---AGMD--LKVGTLVIVEGQLRSYN 79 (219)
T ss_pred hcCEEEEEEEEcCCceEEEEeCCeEEEEEEEEeeccCCCcc--EEEEEEEhhhh---hhhc--ccCCCEEEEEEEEEEec
Confidence 46789999999543 22 12222222 123332 37777765431 1234 9999999999999821
Q ss_pred -C-CCC--ceEEEEEeeEEEEecC
Q 012426 96 -Q-GSK--QKVELKVNKIVLVGKS 115 (464)
Q Consensus 96 -~-~~~--~~~el~~~~i~vls~~ 115 (464)
. .+. .-+++.+.+|+.+.+.
T Consensus 80 ~~~~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 80 KFIDGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred cCCCCcEEEEEEEEEEEEEEccCC
Confidence 1 121 2488899999988875
No 274
>PLN02734 glycyl-tRNA synthetase
Probab=22.53 E-value=78 Score=35.47 Aligned_cols=31 Identities=39% Similarity=0.544 Sum_probs=24.6
Q ss_pred ceEEEccccccCCCCCcc----ccccchhccceeccCC
Q 012426 245 NVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFAD 278 (464)
Q Consensus 245 rVfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~a~~~ 278 (464)
-+-|||++||||=+ +| -+-||+|.|+|- |.+
T Consensus 277 ~~AQIGk~FRNEIs--PR~gl~R~REF~qaEiE~-Fv~ 311 (684)
T PLN02734 277 AAAQIGQAFRNEIS--PRQGLLRVREFTLAEIEH-FVD 311 (684)
T ss_pred eeeeccHhhhcccC--cccceeeechhhhhhhhe-ecC
Confidence 47899999999954 33 357999999997 654
No 275
>smart00350 MCM minichromosome maintenance proteins.
Probab=22.19 E-value=7.7e+02 Score=26.56 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=23.3
Q ss_pred CCCCcEEEEEEEEEeCCC-----C-C----ceEEEEEeeEEEEec
Q 012426 80 ITTGASIWIQGNVVPSQG-----S-K----QKVELKVNKIVLVGK 114 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~~-----~-~----~~~el~~~~i~vls~ 114 (464)
+.+||.|.|+|.+...+. + . ...-|.+.+++.++.
T Consensus 118 ~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~i~~~~~ 162 (509)
T smart00350 118 AKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANHVRKLDY 162 (509)
T ss_pred ccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeEEEEccc
Confidence 899999999999986421 1 1 124556666666543
No 276
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=21.74 E-value=1e+02 Score=32.82 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=49.1
Q ss_pred CCEEEEEEEEeeeecCCCe-EEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCC
Q 012426 29 GLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~g~~-~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
|+.|+|.|-|..+|.-++- .-+++-|-+|. +++++.++...+..+.. +-..-+|.+.|.+..+.
T Consensus 138 g~dv~Iig~v~~~r~t~~gh~ii~~ed~tG~--v~vvl~k~~e~~~~~~d--vl~d~vig~~g~~t~~~ 202 (481)
T COG1311 138 GSDVKIIGEVNDVRETKNGHFIISLEDTTGV--VTVVLGKDREAGRFVVD--VLFDEVIGVSGPVTPRS 202 (481)
T ss_pred CCCcEEEEEEccceeeecccEEEEcccccce--EEEEeccchhhhhhHHh--hcCCccccccCccCCcc
Confidence 4459999999999997433 44678998885 99999986655554446 78888999999986654
No 277
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.55 E-value=3.5e+02 Score=20.13 Aligned_cols=49 Identities=6% Similarity=0.139 Sum_probs=31.7
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc--chhh-hhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GYDQ-VKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~--~~~~-~~~~~l~~g~~V~V~ 89 (464)
.+.|.|..+...| +|+.|..+ ++.++..... .+.. .. ..++.||.|.+.
T Consensus 6 iv~g~V~~v~~~g--i~v~l~~~-----~~g~v~~s~l~~~~~~~~~-~~~~~Gd~v~~~ 57 (73)
T cd05706 6 ILPGRVTKVNDRY--VLVQLGNK-----VTGPSFITDALDDYSEALP-YKFKKNDIVRAC 57 (73)
T ss_pred EEEEEEEEEeCCe--EEEEeCCC-----cEEEEEhhhccCccccccc-cccCCCCEEEEE
Confidence 4689999988766 88888553 6677764331 2211 21 138899998875
No 278
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.12 E-value=2.6e+02 Score=20.67 Aligned_cols=48 Identities=21% Similarity=0.361 Sum_probs=31.6
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhh-hhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQ-VKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~-~~~~~l~~g~~V~V~ 89 (464)
.+.|.|.++...| +|+.|.++ +-.+++.... .+.. -+. +..||.|.|.
T Consensus 3 ~v~g~V~~v~~~G--v~V~l~~~-----v~g~i~~~~l~~~~~~~~~~~--~~~Gd~i~~~ 54 (69)
T cd05697 3 VVKGTIRKLRPSG--IFVKLSDH-----IKGLVPPMHLADVRLKHPEKK--FKPGLKVKCR 54 (69)
T ss_pred EEEEEEEEEeccE--EEEEecCC-----cEEEEEHHHCCCccccCHHHc--CCCCCEEEEE
Confidence 4789999998877 89999654 4456653221 1111 234 8999998875
No 279
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=20.91 E-value=3.3e+02 Score=27.62 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=35.5
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhh---hhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ---VKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~---~~~~~l~~g~~V~V~ 89 (464)
.|.|.|.++-..| +|++|-.-.| ++.++..+...+.. ++. .++.|+-|.|.
T Consensus 20 vV~g~V~~I~d~G--afV~L~EY~g---vEGlIhiSElS~~ri~~i~d-~vkvGd~v~vk 73 (319)
T PTZ00248 20 LVMVKVVRITEMG--AYVSLLEYDD---IEGMILMSELSKRRIRSINK-LIRVGRHEVVV 73 (319)
T ss_pred EEEEEEEEEeCCe--EEEEecCCCC---cEEEEEHHHhcccccCCHHH-hcCCCCEEEEE
Confidence 5789999999998 9999953222 77888755433222 322 38999998876
No 280
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=20.84 E-value=5.6e+02 Score=22.22 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=56.1
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeeec----CC--CeEEEEEEeCcCC--cceEEEEeCCccchhhhhcCCCCCC
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA----QS--SVTFIEVNDGSCL--SNMQCVMTSDAEGYDQVKSGLITTG 83 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~----~g--~~~Fi~LrD~sg~--~~iQvv~~~~~~~~~~~~~~~l~~g 83 (464)
+.|+++.. ..++.|.|.|=|..... .| -.+-+.|.|.++. ..|.|.+=.+.. +.+.. +..|
T Consensus 4 ~~i~~~~~-------~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~--~~LP~--v~~G 72 (138)
T cd04497 4 TPLSSALK-------ESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNE--ESLPI--VKVG 72 (138)
T ss_pred EeHHHHHh-------ccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCCh--hhCCC--CCCC
Confidence 34555554 36788999999987754 23 2566789998762 456666544321 22445 7899
Q ss_pred cEEEEEEEEEeCCCCC-ceEEEE-EeeEEEEecCC
Q 012426 84 ASIWIQGNVVPSQGSK-QKVELK-VNKIVLVGKSD 116 (464)
Q Consensus 84 ~~V~V~G~v~~~~~~~-~~~el~-~~~i~vls~~~ 116 (464)
|+|.+.+.-...-.+. +.+.-. ..++-|.....
T Consensus 73 DVIll~~~kv~~~~g~~~~~~~~~~ss~avf~~~~ 107 (138)
T cd04497 73 DIILLRRVKIQSYNGKPQGISNDRGSSWAVFRGDD 107 (138)
T ss_pred CEEEEEEEEEEEECCceEEEECCCceeEEEEcCCC
Confidence 9999999666554332 111111 33456665544
No 281
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=20.50 E-value=1.8e+02 Score=26.64 Aligned_cols=35 Identities=20% Similarity=0.506 Sum_probs=26.3
Q ss_pred CCCCcEEEEEEEEEeCCC---C--CceEEEEEe---eEEEEec
Q 012426 80 ITTGASIWIQGNVVPSQG---S--KQKVELKVN---KIVLVGK 114 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~~---~--~~~~el~~~---~i~vls~ 114 (464)
|.+|+.|.|+|.+....= + ...+||.|+ .+.+|+.
T Consensus 71 l~KGs~V~VeGrLr~~~y~kdG~~r~~~eVvvd~~g~v~~L~~ 113 (172)
T PRK05733 71 LRKGSQVYIEGKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGG 113 (172)
T ss_pred hCCCCEEEEEEEEEeCcEecCCEEEEEEEEEEeecCeEEECcC
Confidence 999999999999986531 1 124788887 7888864
No 282
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=20.22 E-value=3.9e+02 Score=20.15 Aligned_cols=50 Identities=16% Similarity=0.438 Sum_probs=31.5
Q ss_pred EEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc---hhhhhcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~---~~~~~~~~l~~g~~V~V~ 89 (464)
.+.|.|.++...| +|+.| ++.+ +..++...... ++..+. .++.||.|.|.
T Consensus 6 ~~~g~V~~i~~fG--~fv~l-~~~~---~eGlvh~sel~~~~~~~~~~-~~~~Gd~v~vk 58 (73)
T cd05686 6 IFKGEVASVTEYG--AFVKI-PGCR---KQGLVHKSHMSSCRVDDPSE-VVDVGEKVWVK 58 (73)
T ss_pred EEEEEEEEEEeee--EEEEE-CCCC---eEEEEEchhhCCCcccCHhh-EECCCCEEEEE
Confidence 4689999999888 99999 5431 44555543211 111221 27889998886
No 283
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=20.04 E-value=1.5e+02 Score=27.54 Aligned_cols=32 Identities=19% Similarity=0.443 Sum_probs=21.1
Q ss_pred eEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeC
Q 012426 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (464)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~ 95 (464)
+.|++-.+... ...+. |++||.|.|+|.+...
T Consensus 55 i~V~~Wg~~Ae-~va~~--L~KGd~V~V~GrL~~r 86 (186)
T PRK07772 55 LRCSIWRQAAE-NVAES--LTKGMRVIVTGRLKQR 86 (186)
T ss_pred EEEEEecHHHH-HHHHh--cCCCCEEEEEEEEEcC
Confidence 55655543210 11345 9999999999999865
Done!