Query 012426
Match_columns 464
No_of_seqs 210 out of 1370
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nem_A Aspartyl-tRNA synthetas 100.0 2.6E-96 9E-101 762.1 34.7 401 10-464 3-426 (438)
2 3m4p_A Ehasnrs, asparaginyl-tR 100.0 3.5E-95 1.2E-99 757.2 31.4 403 10-464 18-444 (456)
3 3i7f_A Aspartyl-tRNA synthetas 100.0 5.4E-92 1.9E-96 741.2 31.4 404 10-464 49-536 (548)
4 2xgt_A Asparaginyl-tRNA synthe 100.0 9.8E-92 3.4E-96 729.7 32.5 399 13-464 2-423 (435)
5 1wyd_A Hypothetical aspartyl-t 100.0 2.4E-91 8.1E-96 724.6 33.6 400 10-464 3-417 (429)
6 3bju_A Lysyl-tRNA synthetase; 100.0 2.4E-90 8.1E-95 731.6 36.0 421 6-464 29-499 (521)
7 4ex5_A Lysine--tRNA ligase; st 100.0 2.1E-90 7.1E-95 728.4 31.1 419 6-464 59-519 (529)
8 1x54_A Asparaginyl-tRNA synthe 100.0 5.4E-90 1.9E-94 715.9 33.1 402 10-464 3-422 (434)
9 1n9w_A Aspartyl-tRNA synthetas 100.0 3.4E-90 1.2E-94 714.5 31.1 389 11-464 2-410 (422)
10 1e1o_A Lysyl-tRNA synthetase, 100.0 6.4E-89 2.2E-93 717.3 35.1 419 6-464 37-494 (504)
11 3a74_A Lysyl-tRNA synthetase; 100.0 1.1E-88 3.7E-93 714.6 34.9 419 6-464 29-484 (493)
12 1eov_A ASPRS, aspartyl-tRNA sy 100.0 3.1E-87 1E-91 703.9 33.2 408 10-464 22-475 (487)
13 1l0w_A Aspartyl-tRNA synthetas 100.0 1.8E-84 6.3E-89 693.8 33.0 406 10-464 3-545 (580)
14 1c0a_A Aspartyl tRNA synthetas 100.0 9.8E-84 3.4E-88 690.1 33.4 407 10-464 2-551 (585)
15 4ah6_A Aspartate--tRNA ligase, 100.0 8.6E-73 3E-77 602.5 29.7 411 2-464 2-562 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 2.6E-65 8.8E-70 515.4 22.1 285 138-464 27-337 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 4.8E-57 1.7E-61 447.4 19.3 257 133-464 1-281 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.8 7.6E-23 2.6E-27 202.1 0.8 171 96-292 21-205 (290)
19 12as_A Asparagine synthetase; 99.7 3.3E-16 1.1E-20 151.8 14.1 264 147-463 4-312 (330)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.2 1.1E-11 3.6E-16 121.9 7.9 100 148-277 70-182 (288)
21 2rhq_A Phenylalanyl-tRNA synth 99.1 6.5E-11 2.2E-15 116.7 7.2 125 147-293 51-183 (294)
22 1b7y_A Phers, protein (phenyla 99.0 5.5E-10 1.9E-14 112.3 9.8 133 149-293 101-244 (350)
23 3pco_A Phenylalanyl-tRNA synth 98.4 4.5E-07 1.6E-11 90.0 7.7 124 148-294 106-235 (327)
24 3l4g_A Phenylalanyl-tRNA synth 98.4 2.7E-07 9.2E-12 96.4 5.7 146 144-293 220-398 (508)
25 2i4l_A Proline-tRNA ligase; al 98.2 4.6E-06 1.6E-10 87.0 9.6 116 143-289 62-197 (458)
26 1evl_A Threonyl-tRNA synthetas 98.1 2.4E-06 8.2E-11 87.6 6.7 117 143-291 25-161 (401)
27 2dq3_A Seryl-tRNA synthetase; 98.1 4.2E-06 1.4E-10 86.3 7.7 120 143-290 167-303 (425)
28 1qe0_A Histidyl-tRNA synthetas 98.1 2.4E-06 8.3E-11 87.9 5.6 105 144-278 12-135 (420)
29 1z7m_A ATP phosphoribosyltrans 98.1 1.8E-05 6E-10 79.5 11.2 103 144-278 32-151 (344)
30 1nyr_A Threonyl-tRNA synthetas 98.0 8.9E-06 3.1E-10 88.4 8.6 118 143-291 266-404 (645)
31 2j3l_A Prolyl-tRNA synthetase; 98.0 1.8E-05 6.2E-10 84.7 10.0 117 143-290 42-178 (572)
32 1wu7_A Histidyl-tRNA synthetas 98.0 2.1E-05 7.1E-10 81.4 10.0 105 144-278 16-133 (434)
33 1hc7_A Prolyl-tRNA synthetase; 97.9 3.5E-05 1.2E-09 80.6 11.1 122 143-289 39-178 (477)
34 3uh0_A Threonyl-tRNA synthetas 97.9 1.4E-05 4.8E-10 83.3 8.0 125 143-295 59-203 (460)
35 1h4v_B Histidyl-tRNA synthetas 97.9 2.4E-05 8.4E-10 80.4 8.9 103 144-278 13-135 (421)
36 1htt_A Histidyl-tRNA synthetas 97.9 2.8E-05 9.4E-10 80.1 9.3 103 144-278 14-135 (423)
37 1nj8_A Proline-tRNA synthetase 97.9 3.4E-05 1.2E-09 80.4 10.1 123 143-290 33-175 (459)
38 3rac_A Histidine-tRNA ligase; 97.9 2.8E-05 9.5E-10 78.9 8.8 103 144-278 33-157 (373)
39 1nj1_A PROR, proline-tRNA synt 97.8 3.7E-05 1.3E-09 80.9 9.4 123 143-291 66-208 (501)
40 3net_A Histidyl-tRNA synthetas 97.8 4E-05 1.4E-09 80.0 8.8 135 144-293 22-175 (465)
41 4e51_A Histidine--tRNA ligase; 97.8 4E-05 1.4E-09 80.1 8.7 107 143-278 41-164 (467)
42 3od1_A ATP phosphoribosyltrans 97.8 8.3E-05 2.8E-09 76.1 10.8 103 144-278 20-137 (400)
43 3lc0_A Histidyl-tRNA synthetas 97.7 8.8E-05 3E-09 77.2 10.1 103 144-278 39-157 (456)
44 1ses_A Seryl-tRNA synthetase; 97.7 7.7E-05 2.6E-09 76.8 9.4 123 143-292 161-301 (421)
45 1wle_A Seryl-tRNA synthetase; 97.7 0.00015 5.1E-09 76.0 11.6 121 144-293 215-358 (501)
46 3lss_A Seryl-tRNA synthetase; 97.7 3.4E-05 1.2E-09 80.2 6.6 117 144-291 204-344 (484)
47 2dq0_A Seryl-tRNA synthetase; 97.7 4.8E-05 1.6E-09 79.0 7.2 122 143-292 188-326 (455)
48 3ial_A Prolyl-tRNA synthetase; 97.7 8.1E-05 2.8E-09 78.4 8.7 125 143-292 50-193 (518)
49 3qne_A Seryl-tRNA synthetase, 97.7 5E-05 1.7E-09 79.0 7.0 118 144-292 181-322 (485)
50 1qf6_A THRRS, threonyl-tRNA sy 97.7 4.8E-05 1.6E-09 82.5 7.2 117 143-291 266-402 (642)
51 4hvc_A Bifunctional glutamate/ 97.6 0.00012 4.1E-09 77.2 9.3 125 143-292 56-199 (519)
52 3a32_A Probable threonyl-tRNA 97.6 0.0001 3.4E-09 77.1 7.7 117 143-290 44-182 (471)
53 3cmq_A Phenylalanyl-tRNA synth 97.6 5.8E-05 2E-09 77.5 5.5 104 150-275 49-163 (415)
54 4g84_A Histidine--tRNA ligase, 97.5 0.00031 1.1E-08 73.0 10.7 104 143-277 23-139 (464)
55 3err_A Fusion protein of micro 97.5 0.00025 8.7E-09 74.9 8.8 117 144-293 271-411 (536)
56 4g85_A Histidine-tRNA ligase, 97.4 0.0004 1.4E-08 73.4 10.2 104 143-277 76-192 (517)
57 2cja_A Seryl-tRNA synthetase; 97.4 0.00011 3.9E-09 77.2 5.9 156 143-299 226-402 (522)
58 2du7_A O-phosphoseryl-tRNA syn 97.4 0.00019 6.6E-09 75.3 7.0 49 244-293 218-269 (549)
59 3vbb_A Seryl-tRNA synthetase, 97.3 0.00036 1.2E-08 73.2 8.2 126 144-291 197-346 (522)
60 2odr_B Phosphoseryl-tRNA synth 97.3 0.00012 4.1E-09 77.6 3.8 49 244-293 225-276 (648)
61 2odr_A Phosphoseryl-tRNA synth 97.3 0.00013 4.3E-09 77.5 3.8 49 244-293 225-276 (665)
62 2odr_D Phosphoseryl-tRNA synth 97.3 3.5E-05 1.2E-09 81.8 -0.7 49 244-293 225-276 (685)
63 2odr_C Phosphoseryl-tRNA synth 97.2 0.00016 5.4E-09 77.1 3.8 49 244-293 225-276 (701)
64 1ati_A Glycyl-tRNA synthetase; 97.2 0.0012 4E-08 69.6 9.8 36 144-179 35-72 (505)
65 2du3_A O-phosphoseryl-tRNA syn 97.0 0.00031 1.1E-08 73.8 3.8 50 244-293 206-257 (534)
66 3mf2_A BLL0957 protein; aminoa 96.9 0.0012 4.1E-08 65.5 6.9 141 145-293 61-217 (346)
67 3kdf_D Replication protein A 3 96.8 0.013 4.5E-07 50.1 11.9 99 10-114 7-111 (132)
68 3kf6_A Protein STN1; OB fold, 96.8 0.012 4E-07 52.2 11.6 79 30-114 48-128 (159)
69 2zt5_A Glycyl-tRNA synthetase; 96.8 0.0016 5.5E-08 71.0 7.0 36 143-178 96-132 (693)
70 4gop_B Putative uncharacterize 96.7 0.014 4.7E-07 50.3 11.3 99 9-114 9-116 (136)
71 1usy_A ATP phosphoribosyltrans 96.7 0.0029 9.9E-08 61.2 7.6 85 158-278 12-101 (275)
72 3dm3_A Replication factor A; p 96.3 0.055 1.9E-06 44.3 12.0 87 11-116 5-101 (105)
73 3ikl_A DNA polymerase subunit 96.2 0.0092 3.2E-07 61.6 8.1 110 145-293 101-227 (459)
74 3e0e_A Replication protein A; 96.1 0.075 2.6E-06 42.8 11.6 76 29-115 11-96 (97)
75 1g5h_A Mitochondrial DNA polym 96.0 0.0069 2.4E-07 62.8 5.8 140 145-295 59-219 (454)
76 2k50_A Replication factor A re 95.9 0.044 1.5E-06 45.4 9.3 81 28-115 15-105 (115)
77 2rhq_B Phenylalanyl-tRNA synth 95.8 0.031 1.1E-06 61.9 10.3 117 147-293 491-632 (795)
78 3l4g_B Phenylalanyl-tRNA synth 95.7 0.035 1.2E-06 59.4 10.0 115 149-292 391-521 (589)
79 3ig2_A Phenylalanyl-tRNA synth 95.6 0.029 9.8E-07 52.0 7.7 114 152-293 7-151 (213)
80 2pi2_A Replication protein A 3 95.5 0.12 4E-06 49.7 12.0 100 9-114 46-151 (270)
81 1nnx_A Protein YGIW; structura 95.4 0.068 2.3E-06 44.1 8.7 84 12-114 26-109 (109)
82 3au7_A TIAS, putative uncharac 95.1 0.17 5.8E-06 51.1 12.0 78 27-115 282-362 (402)
83 3ica_A Phenylalanyl-tRNA synth 94.7 0.098 3.4E-06 48.3 8.5 116 152-293 7-151 (213)
84 3kf8_A Protein STN1; OB fold; 94.0 0.49 1.7E-05 43.7 11.5 83 29-115 85-185 (220)
85 2kbn_A Conserved protein; nucl 93.9 0.79 2.7E-05 37.5 11.6 79 29-118 15-97 (109)
86 2k75_A Uncharacterized protein 93.1 1.1 3.9E-05 36.4 11.2 88 12-122 4-100 (106)
87 4gop_A Putative uncharacterize 92.8 0.37 1.3E-05 40.0 7.8 67 27-107 16-82 (114)
88 1o7i_A SSB, SSO2364, single st 92.8 0.88 3E-05 37.8 10.3 75 30-116 13-97 (119)
89 1b7y_B Phers, protein (phenyla 92.1 0.48 1.6E-05 52.2 10.0 110 147-293 487-620 (785)
90 3kdf_A Replication protein A 1 92.1 0.79 2.7E-05 38.4 9.1 71 27-115 20-90 (121)
91 2pi2_E Replication protein A 1 92.0 0.84 2.9E-05 39.4 9.4 90 1-115 22-111 (142)
92 3fhw_A Primosomal replication 90.0 0.81 2.8E-05 38.0 7.1 57 61-121 49-105 (115)
93 2hpi_A DNA polymerase III alph 89.8 0.35 1.2E-05 55.6 6.1 80 27-115 1040-1124(1220)
94 1ynx_A Replication factor-A pr 87.1 0.92 3.1E-05 37.4 5.5 92 11-116 4-110 (114)
95 1jmc_A Protein (replication pr 83.3 2.1 7.1E-05 39.9 6.7 93 10-116 7-114 (246)
96 3f1z_A Putative nucleic acid-b 82.6 5.9 0.0002 31.2 7.8 68 27-96 47-119 (133)
97 3k8a_A Putative primosomal rep 81.8 2.5 8.7E-05 34.2 5.8 47 61-112 55-101 (103)
98 3mxn_B RECQ-mediated genome in 81.2 11 0.00038 32.3 9.7 74 29-115 58-131 (150)
99 1j6q_A Cytochrome C maturation 80.1 17 0.00058 30.8 10.6 90 12-119 13-110 (136)
100 1sr3_A APO-CCME; OB fold, beta 78.7 17 0.0006 30.8 10.2 76 26-119 25-105 (136)
101 3f2b_A DNA-directed DNA polyme 75.2 18 0.00063 40.8 12.0 81 29-114 17-103 (1041)
102 2k52_A Uncharacterized protein 74.4 15 0.00052 27.7 8.0 51 28-89 5-55 (80)
103 1txy_A Primosomal replication 70.1 11 0.00037 30.2 6.6 50 61-114 50-102 (104)
104 3pco_B Phenylalanyl-tRNA synth 64.4 12 0.00041 41.2 7.5 111 154-293 494-628 (795)
105 1v1q_A Primosomal replication 61.8 32 0.0011 29.0 8.1 51 61-115 67-120 (134)
106 4gop_C Putative uncharacterize 61.4 9.4 0.00032 38.8 5.6 92 12-116 4-109 (444)
107 2khj_A 30S ribosomal protein S 61.2 5.7 0.00019 32.1 3.2 78 1-89 1-85 (109)
108 3en2_A Probable primosomal rep 58.2 22 0.00077 28.4 6.2 46 61-110 50-95 (101)
109 2kct_A Cytochrome C-type bioge 55.7 73 0.0025 25.1 11.0 75 27-117 6-87 (94)
110 2fxq_A Single-strand binding p 54.8 30 0.001 32.5 7.5 81 30-114 129-229 (264)
111 3vdy_A SSB, single-stranded DN 52.2 21 0.00072 29.0 5.3 51 61-115 52-109 (116)
112 2b29_A Replication protein A 7 48.3 69 0.0024 26.4 7.9 61 50-115 47-108 (123)
113 4gs3_A Single-stranded DNA-bin 46.6 1.1E+02 0.0039 24.5 10.3 34 80-113 66-106 (107)
114 2k4k_A GSP13, general stress p 45.1 42 0.0015 27.8 6.2 51 28-89 7-61 (130)
115 1z9f_A Single-strand binding p 45.1 33 0.0011 29.5 5.6 36 80-115 81-122 (153)
116 1wjj_A Hypothetical protein F2 44.3 1.5E+02 0.005 25.2 10.9 85 12-115 17-120 (145)
117 1gm5_A RECG; helicase, replica 43.2 27 0.00091 38.4 5.8 78 27-112 163-246 (780)
118 3tqy_A Single-stranded DNA-bin 42.0 30 0.001 29.9 4.9 51 61-115 58-115 (158)
119 3ull_A DNA binding protein; DN 41.8 23 0.0008 29.5 4.0 38 76-115 84-127 (132)
120 2vw9_A Single-stranded DNA bin 40.3 35 0.0012 28.5 4.9 51 61-115 51-108 (134)
121 2a19_A EIF-2- alpha, eukaryoti 33.9 72 0.0025 28.0 6.1 55 28-89 15-71 (175)
122 2khi_A 30S ribosomal protein S 33.2 59 0.002 26.2 5.1 52 27-89 29-85 (115)
123 3ulp_A Single-strand binding p 32.7 61 0.0021 26.5 5.2 37 76-114 71-119 (124)
124 4dka_C RNA-editing complex pro 32.5 1.9E+02 0.0066 23.1 8.2 67 29-96 3-77 (105)
125 1kl9_A Eukaryotic translation 31.9 65 0.0022 28.5 5.5 54 28-89 15-71 (182)
126 3koj_A Uncharacterized protein 31.2 75 0.0026 25.6 5.3 77 30-110 12-107 (108)
127 1wi5_A RRP5 protein homolog; S 30.6 71 0.0024 25.8 5.2 67 28-106 21-92 (119)
128 1qzg_A Protection of telomeres 30.3 2.9E+02 0.0099 24.5 9.9 78 12-98 30-119 (187)
129 2cqo_A Nucleolar protein of 40 27.9 40 0.0014 27.6 3.1 53 27-89 21-77 (119)
130 1luz_A Protein K3, protein K2; 25.2 2.1E+02 0.007 21.8 6.7 53 27-89 10-66 (88)
131 3pco_A Phenylalanyl-tRNA synth 25.2 20 0.00069 35.0 0.9 55 398-463 254-314 (327)
132 3pgz_A Single-stranded DNA-bin 22.8 76 0.0026 28.4 4.2 81 30-114 27-137 (193)
133 2vl6_A SSO MCM N-TER, minichro 22.6 1.7E+02 0.0058 27.1 6.9 35 80-114 225-267 (268)
134 2eqs_A ATP-dependent RNA helic 22.4 1.6E+02 0.0055 23.0 5.8 55 27-89 11-70 (103)
135 3lgj_A Single-stranded DNA-bin 22.2 1.3E+02 0.0043 26.2 5.5 82 30-115 24-135 (169)
136 1se8_A Single-strand binding p 21.8 1E+02 0.0034 29.5 5.2 81 30-114 130-233 (301)
137 3eiv_A Single-stranded DNA-bin 21.5 1.3E+02 0.0045 26.9 5.5 47 61-111 55-108 (199)
138 3m7n_A Putative uncharacterize 20.8 2.2E+02 0.0077 24.7 6.9 53 33-89 60-121 (179)
No 1
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=2.6e-96 Score=762.13 Aligned_cols=401 Identities=27% Similarity=0.465 Sum_probs=362.4
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (464)
++++|++|.+. ..|++|+|+|||+++|.+||++|++|||++|. ||||++++. ..++.++. |+.||+|
T Consensus 3 rt~~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~V 72 (438)
T 3nem_A 3 RTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPK--LRSEDVV 72 (438)
T ss_dssp CSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGG--CCTTCEE
T ss_pred eEEEHHHcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhc--CCCCCEE
Confidence 78999999874 67999999999999999999999999999985 999999764 23566778 9999999
Q ss_pred EEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccc---cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhh
Q 012426 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163 (464)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~ 163 (464)
.|+|+|+++++..+++||++++++|||+|..++|++.+. ++.++++++||||+|++.++++|++||+|++++|+||.
T Consensus 73 ~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~~ 152 (438)
T 3nem_A 73 AVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFH 152 (438)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999886678999999999999998779988654 78899999999999999999999999999999999999
Q ss_pred hCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHH-Hhhc
Q 012426 164 ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATA 242 (464)
Q Consensus 164 ~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lql-l~~g 242 (464)
++||+||+||+|++++|||+++.|.+ +||++++||+||||||||+ +++|
T Consensus 153 ~~gF~EVeTPiL~~~~~eg~~~~f~~------------------------------~~~~~~~yL~~Spql~~q~l~~~g 202 (438)
T 3nem_A 153 ENGFIEIHTPKIIATATEGGTELFPM------------------------------KYFEEDAFLAQSPQLYKQIMMASG 202 (438)
T ss_dssp HTTCEECCCCSEESSCSSCSSSCCEE------------------------------EETTEEEEECSCSHHHHHHGGGTT
T ss_pred HCCcEEEeCCEEecCCCCCCccceeE------------------------------eeCCccEEEecChHHHHHHHHhcC
Confidence 99999999999999999999999976 4789999999999999985 6799
Q ss_pred cCceEEEccccccCCCCCccccccchhccceeccCC-HHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHh
Q 012426 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLS 321 (464)
Q Consensus 243 ~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 321 (464)
++||||||||||||+++|+||||||||||||++|+| ++|+|+++|+||+++++.+.+++..++.+++...
T Consensus 203 ~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l--------- 273 (438)
T 3nem_A 203 LDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFEL--------- 273 (438)
T ss_dssp CCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCC---------
T ss_pred CCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhccccc---------
Confidence 999999999999999998999999999999999999 9999999999999999999988876666554321
Q ss_pred hhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcc---cCCCeeeeeCCCCCcccccccC-CCCCc
Q 012426 322 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQN-DDGRT 397 (464)
Q Consensus 322 ~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~---~~~p~fI~~yP~~~~pfy~~~~-~d~~~ 397 (464)
..+..||+||||.||++++++.|.+ +.||.+++.++|++|++.+. ..+|+||+|||++++|||++.+ +|+++
T Consensus 274 ~~~~~pf~rity~eai~~l~~~g~~----~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~ 349 (438)
T 3nem_A 274 EEPKLPFPRVSYDKALEILGDLGKE----IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEI 349 (438)
T ss_dssp CCCCSSCCEEEHHHHHHHHHHTTCC----CCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTB
T ss_pred ccCCCCceEEEHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCc
Confidence 1245689999999999999988754 46899999999999876542 1389999999999999987655 46789
Q ss_pred eeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 398 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 398 ~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++|||||++| +||+|||+|+|||++|++||+++|++++.++|||+|++||+ | |+|++||.+|||||
T Consensus 350 ~~rfdL~~~G-~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdv 426 (438)
T 3nem_A 350 CRAFDLEYRG-VEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREV 426 (438)
T ss_dssp BSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGG
T ss_pred eEEEEEEECC-EEEEeCeeecCCHHHHHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHc
Confidence 9999999999 69999999999999999999999999999999999999998 2 99999999999986
No 2
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=3.5e-95 Score=757.25 Aligned_cols=403 Identities=29% Similarity=0.505 Sum_probs=345.6
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCc-cchhhhhcCCCCCCcEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIW 87 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~ 87 (464)
+++.|+++. +..|++|+|+|||+++|.+| +++|++|||++|. ||||++++. .....+.. |+.||+|.
T Consensus 18 ~~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~--l~~g~~V~ 86 (456)
T 3m4p_A 18 IVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFGKELCEPEKVKL--LTRECSLE 86 (456)
T ss_dssp CCEECCSTT-------CCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCE--EEEEEESTTTTCHHHHTT--CCTTCEEE
T ss_pred eEEEhhhhh-------hcCCCEEEEEEEEEEEecCCCceEEEEEEeCCcc--EEEEEecccchhhHHhhc--CCCccEEE
Confidence 457788883 37899999999999999996 6999999999985 999999743 22223456 99999999
Q ss_pred EEEEEEeCCCCC--------ceEEEEEeeEEEEecCCCCCCC-CccccchhhhhhcceecCCCccchhhhhHHHHHHHHH
Q 012426 88 IQGNVVPSQGSK--------QKVELKVNKIVLVGKSDPSYPI-QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (464)
Q Consensus 88 V~G~v~~~~~~~--------~~~el~~~~i~vls~~~~~~P~-~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~ 158 (464)
|+|+|++++.+. +++||++++++||++|..++|- ..+.++.++++++||||+|++.++++|++||+|++++
T Consensus 87 V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~i 166 (456)
T 3m4p_A 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYF 166 (456)
T ss_dssp EEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred EEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHH
Confidence 999999876532 6799999999999999743331 1235678999999999999999999999999999999
Q ss_pred HHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHH
Q 012426 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238 (464)
Q Consensus 159 r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lql 238 (464)
|+||.++||+||+||+|++++|||++++|++ +||++++||+||||||||+
T Consensus 167 R~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~------------------------------~~~~~~~~L~~SpqL~lq~ 216 (456)
T 3m4p_A 167 RKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL------------------------------QYFNEPAYLTQSSQLYLES 216 (456)
T ss_dssp HHHHHHTTCEECCCCSEEC------CCCCEE------------------------------EETTEEEEECSCCHHHHHT
T ss_pred HHHHHhCCCEEEeCCeeecCCCCCccccccc------------------------------cccCCCcccccCHHHHHHH
Confidence 9999999999999999999999999999965 6899999999999999997
Q ss_pred HhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHH
Q 012426 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 318 (464)
Q Consensus 239 l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 318 (464)
+++|++||||||||||||+++|+||||||||||||++|+|++|+|+++|+||+++++.+.+++...+......
T Consensus 217 l~~g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~------- 289 (456)
T 3m4p_A 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPH------- 289 (456)
T ss_dssp THHHHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------
T ss_pred HHhccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCcc-------
Confidence 7778999999999999999999999999999999999999999999999999999999987654333222110
Q ss_pred HHhhhhCCCCCCCCHHHHHHHHHhcCCCcc-cCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccC-CCCC
Q 012426 319 RLSTVAERDFVQLSYTDAIELLIKAKKKFE-FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGR 396 (464)
Q Consensus 319 ~l~~~~~~~~~~it~~ea~~~l~~~~~~~~-~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~ 396 (464)
+ ..+..||+||||.||+++|++.|++.+ .+..||.+++.++|++|.+.+ . +|+||+|||++++|||++.+ +|++
T Consensus 290 -~-~~~~~pf~rity~eAi~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~~-~-~P~fv~~yP~~~~pfy~k~~~~dp~ 365 (456)
T 3m4p_A 290 -L-KLPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI-G-CPIFMIHFPSKMKAFYMSKVPGHPD 365 (456)
T ss_dssp -C-CCCCSSCEEEEHHHHHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCEETTEEE
T ss_pred -c-ccCCCCCeEeeHHHHHHHHHHcCCCccccCcchHHHHHHHHHHHHHHHh-C-ceEEEECCCchhCccccccCCCCCC
Confidence 0 123468999999999999998886543 346799999999999988764 4 89999999999999987654 5678
Q ss_pred ceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 397 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 397 ~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+++|||||++|+|||+|||+|+||+++|.+||++.|++++.++|||++++||+ | |||++||.+||||+
T Consensus 366 ~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdv 444 (456)
T 3m4p_A 366 LTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKV 444 (456)
T ss_dssp EECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred eeEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHe
Confidence 99999999999999999999999999999999999999999999999999998 2 99999999999986
No 3
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=5.4e-92 Score=741.21 Aligned_cols=404 Identities=24% Similarity=0.366 Sum_probs=333.6
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc----cchhhhhcCCCCCCcE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGAS 85 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~----~~~~~~~~~~l~~g~~ 85 (464)
.+++|++|.. ...|++|+|+|||+++|.+||++|++|||++| .||||++.+. ..++.++. |+.||+
T Consensus 49 ~~~~i~~l~~------~~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~~es~ 118 (548)
T 3i7f_A 49 KYTEIEELVP------AMAEKTVTIRARVQAVRGKGNMVFLFLRKGIY--TCQALVMKSETISKEFVQFCQK--ISAESI 118 (548)
T ss_dssp CBCCGGGCSG------GGTTCEEEEEEEEEEEEECSSEEEEEEEETTE--EEEEEEECSSSSCHHHHHHHHT--CCTTEE
T ss_pred ceEEhhhcch------hcCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEECCCccCHHHHHHHhC--CCCCCE
Confidence 4577888875 37899999999999999999999999999997 5999998632 11334667 999999
Q ss_pred EEEEEEEEeCCC-----CCceEEEEEeeEEEEecCCCCCCCCccc-----------------------------------
Q 012426 86 IWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR----------------------------------- 125 (464)
Q Consensus 86 V~V~G~v~~~~~-----~~~~~el~~~~i~vls~~~~~~P~~~~~----------------------------------- 125 (464)
|.|+|+|++++. +.+++||++++|+|||+|..++|++.++
T Consensus 119 V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (548)
T 3i7f_A 119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLT 198 (548)
T ss_dssp EEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-----------------
T ss_pred EEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccccccccccccccccccccccccccccccccccc
Confidence 999999999864 2467999999999999998778987421
Q ss_pred -----------------------cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCC
Q 012426 126 -----------------------VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182 (464)
Q Consensus 126 -----------------------~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg 182 (464)
.+.++++++||||||++.++++|++||++++++|+||.++||+||+||+|++++|||
T Consensus 199 ~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~eg 278 (548)
T 3i7f_A 199 KRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEG 278 (548)
T ss_dssp --------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC------
T ss_pred cccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCC
Confidence 245667799999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCc
Q 012426 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTS 261 (464)
Q Consensus 183 ~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~ 261 (464)
++++|.+ +||+.++||+|||||||| ++++|++||||||||||||+++|+
T Consensus 279 ga~~F~v------------------------------~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~ 328 (548)
T 3i7f_A 279 GSNIFEV------------------------------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTR 328 (548)
T ss_dssp -------------------------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSS
T ss_pred CcceeEE------------------------------ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCC
Confidence 9999975 578999999999999996 788999999999999999999999
Q ss_pred cccccchhccceeccC-CHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHH
Q 012426 262 RHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 340 (464)
Q Consensus 262 rHl~EFtmlE~e~a~~-~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l 340 (464)
|||||||||||||+|. +++++|+++|+||+++++.+.++|..++.++....+.. .+ .-.||++|||.||+++|
T Consensus 329 RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~---~~---~~~pf~rit~~eai~~l 402 (548)
T 3i7f_A 329 RHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFE---DL---IYRPFLRLTYKEAIEML 402 (548)
T ss_dssp SCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCC---CC---CCCSCEEEEHHHHHHHH
T ss_pred CcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCcc---cc---ccCCcceeEHHHHHHHH
Confidence 9999999999999998 69999999999999999999888776665443221110 01 11589999999999999
Q ss_pred HhcCCCcccCCCccccccHHHHHHhhh---hcccCCCeeeeeCCCCCcccccccC-CCCCceeeEEEeeCCccccccCcc
Q 012426 341 IKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQ 416 (464)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~~~~~fdl~~~GigEi~~G~~ 416 (464)
++.|.+ ..|+.|++.++|++|++ +.+...++||+|||.+++|||++.+ +|+++++|||||++| +||+|||+
T Consensus 403 ~~~g~~----~~~~~dl~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G-~Ei~nG~~ 477 (548)
T 3i7f_A 403 RASGET----IGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQ 477 (548)
T ss_dssp HHTTCC----CCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETT-EEEEEEEE
T ss_pred HHcCCC----CCCccccchHHHHHHHHHHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECC-EEEeeCee
Confidence 998865 35788999999998864 2334245678999999999997644 578999999999999 69999999
Q ss_pred ccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 417 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 417 r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|+|||++|++||+++|++++.++|||+|++||| | |||++||.+||||+
T Consensus 478 rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdV 536 (548)
T 3i7f_A 478 RIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKV 536 (548)
T ss_dssp ECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGG
T ss_pred ecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHh
Confidence 999999999999999999999999999999988 2 99999999999986
No 4
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=9.8e-92 Score=729.74 Aligned_cols=399 Identities=28% Similarity=0.534 Sum_probs=343.3
Q ss_pred ecccccCCCCCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCc-cchhhhhcCCCCCCcEEEEEE
Q 012426 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQG 90 (464)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V~G 90 (464)
+|+++.+ ..|++|+|+|||+++|.+| +++|++|||++|. ||||++.+. ..|+.. . |+.||+|.|+|
T Consensus 2 ~i~~~~~-------~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~-~--l~~~~~v~v~G 69 (435)
T 2xgt_A 2 KIRDLVK-------HRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDAL-T--VNTECTVEIYG 69 (435)
T ss_dssp CGGGGGG-------GTTSEEEEEEEEEEEEECTTSEEEEEEECSSCE--EEEEEEGGGGSSHHHH-H--CCTTCEEEEEE
T ss_pred chhhhhh-------cCCCEEEEEEEEEEecccCCCcEEEEEEECCce--EEEEECCcchhHHHHh-c--CCCCCEEEEEE
Confidence 4566643 6789999999999999995 7999999999985 999998543 234433 6 99999999999
Q ss_pred EEEeCC---CCCceEEEEEeeEEEEecCCCC--CCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhC
Q 012426 91 NVVPSQ---GSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (464)
Q Consensus 91 ~v~~~~---~~~~~~el~~~~i~vls~~~~~--~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~ 165 (464)
+|++++ ++.+++||++++++||+++.+. +|++.+.++.++++++||||+|++.++++|++||+|++++|+||.++
T Consensus 70 ~v~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~ 149 (435)
T 2xgt_A 70 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNA 149 (435)
T ss_dssp EEEECC------TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcCCCCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999976 3456799999999999986432 67777778889999999999999999999999999999999999999
Q ss_pred CcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCc
Q 012426 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (464)
Q Consensus 166 gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~r 245 (464)
||+||+||+|+++++||++++|.+ +||++++||+||||||||++++|++|
T Consensus 150 gFlEVeTPiL~~s~~eG~~~~F~~------------------------------~~~g~~~~L~~SpqLylq~l~~g~~r 199 (435)
T 2xgt_A 150 GYVEVAPPTLVQTQVEGGSTLFNL------------------------------DYFGEQSFLTQSSQLYLETCIPTLGD 199 (435)
T ss_dssp TCEECCCCSEESCCSSCTTSCCEE------------------------------EETTEEEEECSCSHHHHHHHHHHHCS
T ss_pred CCEEEECCeEeeccCCCchhceee------------------------------ccCCcccccCCChHHHHHHhhhccCc
Confidence 999999999999999999999965 58899999999999999976678999
Q ss_pred eEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCccc--ccccccccccchHHHHhhh
Q 012426 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED--MDFFNTWIEKGIIDRLSTV 323 (464)
Q Consensus 246 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~--i~~~~~~~~~~~~~~l~~~ 323 (464)
|||||||||||+++|+||+||||||||||+|+|++|+|+++|+||+++++.+.+.+... +...... + ..
T Consensus 200 vfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~--------~-~~ 270 (435)
T 2xgt_A 200 VFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPK--------F-QP 270 (435)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTT--------C-CC
T ss_pred eEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhcccc--------c-cc
Confidence 99999999999999999999999999999999999999999999999999997654211 1111100 0 01
Q ss_pred hCCCCCCCCHHHHHHHHHhcCCCccc--CCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCC-CCCceee
Q 012426 324 AERDFVQLSYTDAIELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAA 400 (464)
Q Consensus 324 ~~~~~~~it~~ea~~~l~~~~~~~~~--~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~-d~~~~~~ 400 (464)
...||+||||.||++++++.+...+. +..||.++..++|++|.+.+ . +|+||+|||.+++|||++.++ |+++++|
T Consensus 271 ~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~-~-~p~fv~d~P~~~~~f~a~~~~~~p~~~~~ 348 (435)
T 2xgt_A 271 PERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI-N-KPILLNRFPSEIKAFYMQRDAQDNTLTES 348 (435)
T ss_dssp CCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCBCSSCTTBBSE
T ss_pred cCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHHHHHHHHhc-C-CcEEEECCChhhCcccCCCCCCCcCeEEE
Confidence 23589999999999999887754322 35789999999999987754 4 799999999999999877554 6789999
Q ss_pred EEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 401 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 401 fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
||||++|+|||+|||+|+||+++|++||++.|++++.++|||+|++||+ | |||+++|.+||||+
T Consensus 349 fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdv 423 (435)
T 2xgt_A 349 VDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDV 423 (435)
T ss_dssp EEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred EEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhE
Confidence 9999999999999999999999999999999999999999999999998 2 99999999999985
No 5
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.4e-91 Score=724.55 Aligned_cols=400 Identities=28% Similarity=0.433 Sum_probs=362.1
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
++++|++|... ..|++|+|+|||+++|.+|+++|++|||++|. ||||++++...|+.++. |+.||+|.|+
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~--l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVTPE------YDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKNSSAFGISQE--LTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChHHHHHHHh--CCCCCEEEEE
Confidence 57889998863 67999999999999999999999999999985 99999876555676777 9999999999
Q ss_pred EEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccc---cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCC
Q 012426 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (464)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~g 166 (464)
|+|.+++++.+++||++++++|||+|..++|++.+. ++.++++++||||+|++.+++++++||+|++++|+||.++|
T Consensus 73 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~g 152 (429)
T 1wyd_A 73 GIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEG 152 (429)
T ss_dssp EEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988788999999999999997679988765 78899999999999999999999999999999999999999
Q ss_pred cEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCce
Q 012426 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246 (464)
Q Consensus 167 F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rV 246 (464)
|+||+||+|+++++||++++|.+ +|+++++||+||||+|+|++++|++||
T Consensus 153 F~eV~TP~l~~~~~e~~~~~f~~------------------------------~~~~~~~~L~~Spql~~~~~~~g~~rv 202 (429)
T 1wyd_A 153 FIEIFTPKIIASATEGGAQLFPV------------------------------IYFGKEAFLAQSPQLYKELMAGVVERV 202 (429)
T ss_dssp CEECCCCSEESSCSSTTCCCCEE------------------------------EETTEEEEECSCCHHHHHHHHHHHSEE
T ss_pred CEEEECCEEEeeCCCCCceeEEE------------------------------ecCCceEEecCCcHHHHHHHHhCcCce
Confidence 99999999999999999999975 478899999999999998888899999
Q ss_pred EEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCC
Q 012426 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326 (464)
Q Consensus 247 feI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~ 326 (464)
|+||||||||++++.||+|||||||+|++|.|++|+|+++|+|++++++.+.++|..++++.+...+ .++.
T Consensus 203 f~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~---------~l~~ 273 (429)
T 1wyd_A 203 FEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPP---------EVKI 273 (429)
T ss_dssp EEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCC---------CCCS
T ss_pred EEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcccccc---------cCCC
Confidence 9999999999999899999999999999999999999999999999999999887766665543211 1246
Q ss_pred CCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccC-CCCCceeeEEEee
Q 012426 327 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLV 405 (464)
Q Consensus 327 ~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~~~~~fdl~~ 405 (464)
||+|+||.||++++++.|.+ ..||.+++.++|++|.+.+.. +|+||+|||..++|||++.+ +|+++++|||||+
T Consensus 274 pf~rity~eA~~~~~~~g~~----~~~~~~l~~~~e~~l~~~~~~-~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~ 348 (429)
T 1wyd_A 274 PIKRLKYTEAIEILRSKGYN----IKFGDDIGTPELRILNEELKE-DLYFIVDWPSDARPFYTKSKSENPELSESFDLIY 348 (429)
T ss_dssp SCEEEEHHHHHHHHHHSSCC----CCTTSCCCHHHHHHHHHHHCC-SEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEE
T ss_pred CccEEEHHHHHHHHHhcCCC----cccCcccCcHHHHHHHHHhcc-CCEEEecCChhhChhhCCcCCCCCCeEEEEEEEE
Confidence 89999999999999887743 468889999999998876543 69999999999999987655 4677999999999
Q ss_pred CCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 406 PRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 406 ~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+|+ ||+|||+|+||+++|++||+++|++++.++|||+|++||+ | |+|+++|.+||||+
T Consensus 349 ~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdv 417 (429)
T 1wyd_A 349 KFL-EIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEI 417 (429)
T ss_dssp TTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGT
T ss_pred CCE-EEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhE
Confidence 998 9999999999999999999999999999999999999998 2 99999999999985
No 6
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=2.4e-90 Score=731.57 Aligned_cols=421 Identities=16% Similarity=0.208 Sum_probs=360.7
Q ss_pred cccccceecccccCCCCC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCcc----chhhh-h
Q 012426 6 GEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV-K 76 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~~----~~~~~-~ 76 (464)
++|.++++++++.+.|++ ++...+++|+|+|||+++|.+| |++|++|||++| .||||++++.. .|+.+ +
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~~ 106 (521)
T 3bju_A 29 HKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV--KLQVMANSRNYKSEEEFIHINN 106 (521)
T ss_dssp SCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTE--EEEEEEEGGGSSCHHHHHHHHH
T ss_pred CcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCE--EEEEEEECCccCCHHHHHHHHh
Confidence 578999999999876553 2344578999999999999999 999999999997 59999986532 35553 5
Q ss_pred cCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcc-ccchhhhhhcceecCC-CccchhhhhHHHHH
Q 012426 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPR-TNTFGAVARVRNAL 154 (464)
Q Consensus 77 ~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~-~~~~~~~r~~r~l~~R-~~~~~~~~~~rs~i 154 (464)
. |+.||+|.|+|+|.+++++ ++||+|++|++|++|..++|.... ..+.+.+.++||||+| ++.++++|++||+|
T Consensus 107 ~--l~~gd~V~V~G~v~~t~~g--e~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i 182 (521)
T 3bju_A 107 K--LRRGDIIGVQGNPGKTKKG--ELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKI 182 (521)
T ss_dssp H--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHHH
T ss_pred c--CCCCCEEEEEEEEEecCCC--CEEEEEeEEEEeecCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHHH
Confidence 7 9999999999999999865 499999999999999866665433 2467778899999999 78999999999999
Q ss_pred HHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhH
Q 012426 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (464)
Q Consensus 155 ~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql 234 (464)
++++|+||.++||+||+||+|+++++++++++|. +++ ++|++++||+|||||
T Consensus 183 ~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~-t~~---------------------------~~~~~~~yL~~SpqL 234 (521)
T 3bju_A 183 ITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFI-TYH---------------------------NELDMNLYMRIAPEL 234 (521)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCE-EEE---------------------------TTTTEEEEECSCSHH
T ss_pred HHHHHHHHHHCCCEEEeCceeeccCCCcccccee-eec---------------------------ccCCcceEeeCCHHH
Confidence 9999999999999999999999988888899994 443 478999999999999
Q ss_pred HHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc----------
Q 012426 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE---------- 303 (464)
Q Consensus 235 ~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~---------- 303 (464)
||| ++++|++||||||||||||++++ ||||||||||||++|+|++|+|+++|+||+++++.+.+++.-
T Consensus 235 ~lk~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~ 313 (521)
T 3bju_A 235 YHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQ 313 (521)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSC
T ss_pred HHHHHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCceEEecccccccc
Confidence 997 67899999999999999999985 999999999999999999999999999999999999876531
Q ss_pred --cccccccccccchHHHHhhhhCCCCC---CCCHHHHHH----HHHhcCCCcccCCCccccccHHHHHHhhhhcccCCC
Q 012426 304 --DMDFFNTWIEKGIIDRLSTVAERDFV---QLSYTDAIE----LLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCP 374 (464)
Q Consensus 304 --~i~~~~~~~~~~~~~~l~~~~~~~~~---~it~~ea~~----~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p 374 (464)
++++..+|.+.++.++++...+.+++ .++.+++.+ +.++.|..+..+.+||..++.++|+++.+.+ . +|
T Consensus 314 ~~~~d~~~pf~rit~~eai~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l-~-~P 391 (521)
T 3bju_A 314 AYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC-I-NP 391 (521)
T ss_dssp CEEEECCSSCEEEEHHHHHHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGC-C-SC
T ss_pred cceeccCCCcccccHHHHHHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhc-C-Cc
Confidence 34455678888888888888887764 355544443 3344566555566788899999999976654 4 79
Q ss_pred eeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc------CCCccc--hHHHHHHhh
Q 012426 375 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYLDLRH 446 (464)
Q Consensus 375 ~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~------g~~~~~--~~~yl~~~~ 446 (464)
+||+|||.+++||||++++|+++++|||||++|. ||+|||+|++||.+|++||+++ |.+++. ++|||+|++
T Consensus 392 ~fI~dyP~~~spla~~~~~dp~~~~rfdL~i~G~-Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~al~ 470 (521)
T 3bju_A 392 TFICDHPQIMSPLAKWHRSKEGLTERFELFVMKK-EICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALE 470 (521)
T ss_dssp EEEECCBGGGCTTBCBCSSSTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHT
T ss_pred EEEECCccccCcccccCCCCCCeeeeEEEEEcce-eeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHHHh
Confidence 9999999999999999888999999999999995 9999999999999999999764 777765 699999999
Q ss_pred hhh--------h---HhhhhcCCCCCCCC
Q 012426 447 YGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 447 ~G~--------g---L~mll~~~~~I~~~ 464 (464)
||| | |||++||.+||||+
T Consensus 471 yG~PP~gG~GlGiDRLvMlltg~~~IRdV 499 (521)
T 3bju_A 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEV 499 (521)
T ss_dssp TTCCSEEEEEEEHHHHHHHHTTCSSGGGS
T ss_pred cCCCCceeEEEcHHHHHHHHhCCCcHHhE
Confidence 998 2 99999999999986
No 7
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=2.1e-90 Score=728.35 Aligned_cols=419 Identities=18% Similarity=0.233 Sum_probs=337.2
Q ss_pred cccccceecccccCCCCCCCC----CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcC
Q 012426 6 GEFRKKLKIVDVKGGPNEGLD----RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSG 78 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~~~----~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~ 78 (464)
++|.++++++++.+.+.+... ..|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.++.
T Consensus 59 ~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~~~~- 135 (529)
T 4ex5_A 59 NDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSG--QIQFFVTPADVGAETYDAFKK- 135 (529)
T ss_dssp CCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEECSSC--EEEEEECHHHHCHHHHHHHHT-
T ss_pred CCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCCeEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhc-
Confidence 578999999999987653111 1278999999999999999999999999997 5999998753 23666788
Q ss_pred CCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccc---hhhhhhcceecCC-CccchhhhhHHHHH
Q 012426 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNAL 154 (464)
Q Consensus 79 ~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~rs~i 154 (464)
|+.||+|.|+|+|.++++++ +||.+++|+|||+|. +|+|.+.++ .+.++++||||+| ++.++++|++||+|
T Consensus 136 -l~~gd~V~V~G~v~~t~~ge--lel~~~~i~vLs~a~--~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i 210 (529)
T 4ex5_A 136 -WDLGDIVAARGVLFRTNKGE--LSVKCTQLRLLAKAL--RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKA 210 (529)
T ss_dssp -CCTTCEEEEEEEEEECTTSC--EEEEEEEEEEEECCS--SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHHH
T ss_pred -CCCCCEEEEEEEEEEcCCCc--EEEEEEEEEEEecCC--CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 99999999999999998754 999999999999997 555555443 4677799999997 78999999999999
Q ss_pred HHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhH
Q 012426 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (464)
Q Consensus 155 ~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql 234 (464)
++++|+||.++||+||+||+|+++++++++++|. |++ ++|+.++||+|||||
T Consensus 211 ~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~-t~~---------------------------n~~~~~~yL~~SpqL 262 (529)
T 4ex5_A 211 IASIRKFMGDADFMEVETPMLHPIPGGAAAKPFV-THH---------------------------NALDMEMFLRIAPEL 262 (529)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCE-EEE---------------------------TTTTEEEEECSCSHH
T ss_pred HHHHHHHHHHCCCEEEeCCeeeccCCCCcccccc-ccc---------------------------ccCCcceecccCHHH
Confidence 9999999999999999999999887777789994 443 468999999999999
Q ss_pred HHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc-----ccccc
Q 012426 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-----DMDFF 308 (464)
Q Consensus 235 ~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~-----~i~~~ 308 (464)
||| ++++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+++.- .+++.
T Consensus 263 ylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~id~~ 341 (529)
T 4ex5_A 263 YLKRLIVGGFERVFEINRNFRNEGVS-PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDLA 341 (529)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCSCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEETT
T ss_pred HHHHHHhcCCCcEEEeehheecCCCC-CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcCceecCceeeccC
Confidence 996 7899999999999999999997 7999999999999999999999999999999999999886531 23333
Q ss_pred ccccccchHHHHhhhhC-CCCCC-CCHHHHHHHHHhcCCCccc----CCCccccccHHHHHHhhhhcccCCCeeeeeCCC
Q 012426 309 NTWIEKGIIDRLSTVAE-RDFVQ-LSYTDAIELLIKAKKKFEF----LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 382 (464)
Q Consensus 309 ~~~~~~~~~~~l~~~~~-~~~~~-it~~ea~~~l~~~~~~~~~----~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~ 382 (464)
.+|.+.++.++++.+.+ .++.. .+.+++.+++++.|++++. ...+|..++..++. ++++.+. +||||+|||.
T Consensus 342 ~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~-~vE~~l~-~P~FI~dyP~ 419 (529)
T 4ex5_A 342 QPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEE-TAEAQLW-EPTFIIDYPI 419 (529)
T ss_dssp SCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHH-HTGGGCC-SCEEEEEEEG
T ss_pred CCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHH-HhccccC-CCEEEECCch
Confidence 34444444444443333 11111 1233344444445555433 22344444444444 4666666 7999999999
Q ss_pred CCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH------cCCCccc--hHHHHHHhhhhh-----
Q 012426 383 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDS--YWWYLDLRHYGS----- 449 (464)
Q Consensus 383 ~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~~~~~G~----- 449 (464)
+++|||+++++|+++++|||||++|+ ||||||+|++||++|++||.+ .|.++.. .+|||+|++|||
T Consensus 420 ~~splak~~~~~p~~~~rFeL~i~G~-EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aleyG~PP~gG 498 (529)
T 4ex5_A 420 EVSPLARESDTVAGITERFELFITGR-EIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGG 498 (529)
T ss_dssp GGCTTBCBCSSSTTEEEEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCCEEE
T ss_pred hhCCCcccCCCCCCceEEEEEEECCE-EEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHcCCCCCcE
Confidence 99999998888999999999999996 999999999999999999864 2434333 289999999998
Q ss_pred ---h---HhhhhcCCCCCCCC
Q 012426 450 ---G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 ---g---L~mll~~~~~I~~~ 464 (464)
| |||++||.+||||+
T Consensus 499 ~GlGiDRLvMlltg~~~IRdV 519 (529)
T 4ex5_A 499 CGIGIDRLVMLLTDSPTIRDV 519 (529)
T ss_dssp EEEEHHHHHHHHHTCSSGGGG
T ss_pred EEEeHHHHHHHHcCCCcHHHe
Confidence 2 99999999999986
No 8
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=5.4e-90 Score=715.90 Aligned_cols=402 Identities=35% Similarity=0.583 Sum_probs=364.3
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (464)
++++|++|... ..|++|+|+|||+++|.+||++|++|||++|. ||||++++. ..|+.++. |+.||+|
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~v 72 (434)
T 1x54_A 3 EKVYCQEVKPE------LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKK--LGRESSV 72 (434)
T ss_dssp CCCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHT--CCTTCEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhc--CCCCCEE
Confidence 57889999863 67999999999999999999999999999985 999997542 33666777 9999999
Q ss_pred EEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCC--CccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhh
Q 012426 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI--QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (464)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~--~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~ 164 (464)
.|+|+|.+++++.+++||++++++|||+| .++|+ +.+.++.++++++||||+|++.+++++++||++++++|+||.+
T Consensus 73 ~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~ 151 (434)
T 1x54_A 73 IVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK 151 (434)
T ss_dssp EEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998878899999999999999 67998 7777889999999999999999999999999999999999999
Q ss_pred CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccC
Q 012426 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALS 244 (464)
Q Consensus 165 ~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~ 244 (464)
+||+||+||+|+++++|+++++|.+ +|+++++||+||||+|+|++++|++
T Consensus 152 ~gF~eVeTP~l~~~~~e~~~~~f~~------------------------------~~~~~~~~Lr~Spel~~~~~~~g~~ 201 (434)
T 1x54_A 152 DGWHEVFPPILVTGAVEGGATLFKL------------------------------KYFDKYAYLSQSAQLYLEAAIFGLE 201 (434)
T ss_dssp TTCEECCCCSEESCCSSCGGGCCEE------------------------------EETTEEEEECSCSHHHHHHHHHHHS
T ss_pred CCCEEEeCcEEEeecCCCCceeEEE------------------------------eecCCcEEeccChHHHHHHHhcCcc
Confidence 9999999999999999999999975 4788999999999999988888999
Q ss_pred ceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhh
Q 012426 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324 (464)
Q Consensus 245 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 324 (464)
|||+||||||||++++.||+|||||||+|++|.|++|+|+++|+|++++++.+.++|..++++.+... +.++ .+
T Consensus 202 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~-----~~~~-~~ 275 (434)
T 1x54_A 202 KVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDL-----TTLK-NT 275 (434)
T ss_dssp EEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCC-----HHHH-TC
T ss_pred ceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCccc-----cccc-cc
Confidence 99999999999999988999999999999999999999999999999999999988888887776532 1222 24
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccC-CCCCceeeEEE
Q 012426 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDM 403 (464)
Q Consensus 325 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~~~~~fdl 403 (464)
+.||+|+||.||++++++.|.+ ..||.+++.++|++|.+.+ . +|+||+|||..++|||++.+ +|+++++||||
T Consensus 276 ~~pf~rity~ea~~~~~~~g~~----~~~~~dl~~~~e~~l~~~~-~-~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl 349 (434)
T 1x54_A 276 EPPFPRISYDEAIDILQSKGVN----VEWGDDLGADEERVLTEEF-D-RPFFVYGYPKHIKAFYMKEDPNDPRKVLASDM 349 (434)
T ss_dssp CSSCCEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHTTC-S-SCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEE
T ss_pred CCCCcEEEHHHHHHHHHhcCCC----cccCCccChHHHHHHHHHh-C-CcEEEEcCChhhCcccCCcCCCCCCeEEEEEE
Confidence 6799999999999999987753 4688899999999988755 3 79999999999999987554 56789999999
Q ss_pred eeC-CccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 404 LVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 404 ~~~-GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|++ |+|||+|||+|+|||++|++||+++|++++.++|||+|++||+ | |+|+++|.+||||+
T Consensus 350 ~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdv 422 (434)
T 1x54_A 350 LAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWA 422 (434)
T ss_dssp EETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGG
T ss_pred EECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhE
Confidence 999 9999999999999999999999999999999999999999988 3 99999999999985
No 9
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=3.4e-90 Score=714.54 Aligned_cols=389 Identities=25% Similarity=0.396 Sum_probs=303.5
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCC-CCcEEEEE
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQ 89 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~-~g~~V~V~ 89 (464)
+++|++|. . ..|++|+|+|||+++|.+||++|++|||++|. ||||+++ +. |+ .||+|.|+
T Consensus 2 ~~~~~~l~-~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~--------~~--l~~~~~~v~v~ 62 (422)
T 1n9w_A 2 RVLVRDLK-A------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGG--------LK--LPLPESALRVR 62 (422)
T ss_dssp BCCGGGGG-G------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEES--------CC--CCCTTCEEEEE
T ss_pred eEEHHHHH-h------cCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEEc--------cc--cCCCCCEEEEE
Confidence 46788887 3 67899999999999999999999999999985 9999985 34 99 99999999
Q ss_pred EEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccc----cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhC
Q 012426 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR----VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (464)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~----~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~ 165 (464)
|+|.+++++.+++||++++++|||+|..++|++.+. ++.++++++||||+|++.+++++++||++++++|+||.++
T Consensus 63 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 63 GLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEEEECTTSTTSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999988788999999999999997779988766 7889999999999999999999999999999999999999
Q ss_pred CcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCc
Q 012426 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (464)
Q Consensus 166 gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~r 245 (464)
||+||+||+|+++++|+++++|.+ +|+++++||+||||+|+|++++|++|
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~------------------------------~~~g~~~~L~~Spel~~~~l~~g~~r 192 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGV------------------------------DYFEKRAYLAQSPQLYKQIMVGVFER 192 (422)
T ss_dssp TCEECCCC----------------------------------------------------------CHHHHHHHHHHHSE
T ss_pred CCEEEECCEEEEeCCCCCceeEEE------------------------------eeCCCcEEeeeCHHHHHHHHhhCCCc
Confidence 999999999999999999999965 47889999999999999876688999
Q ss_pred eEEEccccccCCCCCccccccchhccceeccC-CHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhh
Q 012426 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324 (464)
Q Consensus 246 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 324 (464)
||+||||||||++++.||+|||||||+|++|+ |++|+|+++|+|++++++.+.+++..++++.+...+ ..
T Consensus 193 vf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~---------~~ 263 (422)
T 1n9w_A 193 VYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP---------SF 263 (422)
T ss_dssp EEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCC---------CC
T ss_pred eeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccc---------cc
Confidence 99999999999999889999999999999999 999999999999999999999888777766543211 11
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcc---cCCCeeeeeCCCCCcccccccCCCCCceeeE
Q 012426 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 401 (464)
Q Consensus 325 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~---~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~f 401 (464)
..||+|+||.||++++++.| ...||.+++.++|++|.+.+. ..+|+||+|||..++|||+++++| ++++||
T Consensus 264 ~~pf~rity~eA~~~~~~~~-----~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~~~~f 337 (422)
T 1n9w_A 264 PQDIPRLTHAEAKRILKEEL-----GYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GTTRSF 337 (422)
T ss_dssp SSSCCEEEHHHHHHHHHHTS-----CCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SBBSEE
T ss_pred CCCcceeEHHHHHHHHHhcC-----CcccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CEEEEE
Confidence 15899999999999998776 246888999999998876432 226999999999999999998877 899999
Q ss_pred EEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 402 DMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 402 dl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|||++|+ ||+|||+|+||+++|++||++.|++++.++|||+|++||+ | |||+++|.+||||+
T Consensus 338 DL~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdv 410 (422)
T 1n9w_A 338 DLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYA 410 (422)
T ss_dssp EEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGG
T ss_pred EEEECCE-EEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhE
Confidence 9999998 9999999999999999999999999999999999999998 2 99999999999985
No 10
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=6.4e-89 Score=717.35 Aligned_cols=419 Identities=17% Similarity=0.269 Sum_probs=339.9
Q ss_pred cccccceecccccCCCCCCCC----CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchh-hhhc
Q 012426 6 GEFRKKLKIVDVKGGPNEGLD----RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-QVKS 77 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~~~----~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~-~~~~ 77 (464)
++|.++++|+++.+.+.+... ..|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+ .++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~~ 114 (504)
T 1e1o_A 37 NDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQFKK 114 (504)
T ss_dssp CCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHHTGGG
T ss_pred CCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCCcEEEEEEECCe--eEEEEEECCcCCHHHHHHHHhc
Confidence 578999999999987543110 1278999999999999999999999999997 5999998763 3366 5777
Q ss_pred CCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccc---hhhhhhcceecCC-CccchhhhhHHHH
Q 012426 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNA 153 (464)
Q Consensus 78 ~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~rs~ 153 (464)
|+.||+|.|+|+|.+++++ ++||+|++++||++|..++| .+.++ .+.+.++||||+| ++.++++|++||+
T Consensus 115 --l~~g~~V~V~G~v~~~~~g--e~ei~~~~i~vl~~a~~plP--~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~ 188 (504)
T 1e1o_A 115 --WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALRPLP--DKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSK 188 (504)
T ss_dssp --CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSSCCC--C-------TTHHHHTHHHHHHHCHHHHHHHHHHHH
T ss_pred --CCCCCEEEEEEEEEecCCc--eEEEEEEEEEEecccCCCCC--ccccCCcChhhhhhccchhhhcCHHHHHHHHHHHH
Confidence 9999999999999999875 49999999999999974444 45444 5677799999996 8899999999999
Q ss_pred HHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchh
Q 012426 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (464)
Q Consensus 154 i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spq 233 (464)
|++++|+||.++||+||+||+|+++++++++++|.+ ++ ++|+.++||+||||
T Consensus 189 i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t-~~---------------------------~~~~~~~yL~~Spq 240 (504)
T 1e1o_A 189 ILAAIRQFMVARGFMEVETPMMQVIPGGASARPFIT-HH---------------------------NALDLDMYLRIAPE 240 (504)
T ss_dssp HHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEE-EE---------------------------TTTTEEEEECSCSH
T ss_pred HHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEe-cc---------------------------CCCCceEEeccCHH
Confidence 999999999999999999999998877777899954 33 46899999999999
Q ss_pred HHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc-----cccc
Q 012426 234 LNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-----DMDF 307 (464)
Q Consensus 234 l~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~-----~i~~ 307 (464)
|||| ++++|++||||||||||||+++ .||+|||||||||++|+|++|+|+++|+||+++++.+++++.- .+++
T Consensus 241 Lylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~i~~~~~~i~~ 319 (504)
T 1e1o_A 241 LYLKRLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDF 319 (504)
T ss_dssp HHHHHHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEET
T ss_pred HHHHHHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCceeeeCCEeecc
Confidence 9997 5789999999999999999997 5999999999999999999999999999999999999987631 1233
Q ss_pred cccccccchHHHHhhhhC-CCCCCC-CHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCc
Q 012426 308 FNTWIEKGIIDRLSTVAE-RDFVQL-SYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385 (464)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~-~~~~~i-t~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~ 385 (464)
..+|.+.++.++++.+.+ .++..+ +.+++.+++++.|.+++.+..+|..++..+|.+ +++.+. +|+||+|||..++
T Consensus 320 ~~pf~rity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~-ve~~~~-~p~fV~dyP~~~~ 397 (504)
T 1e1o_A 320 GKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEV-AEAHLI-QPTFITEYPAEVS 397 (504)
T ss_dssp TSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHH-TGGGCC-SCEEEECCBGGGC
T ss_pred CCCceEEeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHH-hhccCC-CeEEEECCCcccC
Confidence 334555555555554444 333333 344444444555554433334555666667766 455555 7999999999999
Q ss_pred ccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc-----CCCccch---HHHHHHhhhhh--------
Q 012426 386 AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGS-------- 449 (464)
Q Consensus 386 pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~-----g~~~~~~---~~yl~~~~~G~-------- 449 (464)
||||++++|+++++|||||++|+ ||+|||+|+||+++|++||++. ..+++.+ +|||+|++||+
T Consensus 398 pf~~~~~~dp~~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~gl 476 (504)
T 1e1o_A 398 PLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGI 476 (504)
T ss_dssp TTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEE
T ss_pred cCcCCCCCCCCceEEEEEEECCe-EEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCceeEEE
Confidence 99999888899999999999998 9999999999999999999763 1244443 99999999998
Q ss_pred h---HhhhhcCCCCCCCC
Q 012426 450 G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 g---L~mll~~~~~I~~~ 464 (464)
| |||++||.+||||+
T Consensus 477 GiDRLvmlltg~~~IRdV 494 (504)
T 1e1o_A 477 GIDRMIMLFTNSHTIRDV 494 (504)
T ss_dssp EHHHHHHHHHTCSSGGGT
T ss_pred cHHHHHHHHhCCCcHHhE
Confidence 2 99999999999986
No 11
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=1.1e-88 Score=714.57 Aligned_cols=419 Identities=19% Similarity=0.276 Sum_probs=358.1
Q ss_pred cccccceecccccCCCCCCCC----CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcC
Q 012426 6 GEFRKKLKIVDVKGGPNEGLD----RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSG 78 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~~~----~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~ 78 (464)
++|.++++|+++.+.+.+... ..|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~- 105 (493)
T 3a74_A 29 KRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTG--QIQIYVRQDDVGEQQYELFKI- 105 (493)
T ss_dssp CCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEEHHHHHHHHHHHHHH-
T ss_pred CCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCCcEEEEEEECCE--eEEEEEECCcCCHHHHHHHhc-
Confidence 478899999999986543110 1278999999999999999999999999997 5999998653 23566778
Q ss_pred CCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccc---hhhhhhcceecCC-CccchhhhhHHHHH
Q 012426 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNAL 154 (464)
Q Consensus 79 ~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~rs~i 154 (464)
|+.||+|.|+|+|.+++++ ++||+|++++||++|.. |+|.+.++ .+.+.++||||+| ++.++++|++||+|
T Consensus 106 -l~~g~~v~V~G~v~~~~~g--e~ei~~~~i~vl~~~~~--plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i 180 (493)
T 3a74_A 106 -SDLGDIVGVRGTMFKTKVG--ELSIKVSSYEFLTKALR--PLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLI 180 (493)
T ss_dssp -CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHHH
T ss_pred -CCCCCEEEEEEEEEeCCCC--cEEEEEEEEEEcccccC--CCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHHH
Confidence 9999999999999999875 49999999999999974 44455444 6677799999996 89999999999999
Q ss_pred HHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhH
Q 012426 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (464)
Q Consensus 155 ~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql 234 (464)
++++|+||.++||+||+||+|+++++++++++|.+ ++ ++|++++||+|||||
T Consensus 181 ~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~-~~---------------------------~~~~~~~yLr~SpqL 232 (493)
T 3a74_A 181 IQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFIT-HH---------------------------NALDMTLYMRIAIEL 232 (493)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEE-EE---------------------------TTTTEEEEECSCSHH
T ss_pred HHHHHHHHHhCCeEEEECCeEEecCCCCcccceEe-cc---------------------------cCCCceeEEecCHHH
Confidence 99999999999999999999998887777899954 32 468999999999999
Q ss_pred HHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc-----cccccc
Q 012426 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFF 308 (464)
Q Consensus 235 ~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~-----~~i~~~ 308 (464)
||| ++++|++||||||||||||+++ .||+|||||||+|++|+|++|+|+++|+||+++++.+.+++. ..+++.
T Consensus 233 ylk~l~v~G~~rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~i~~~~~~i~~~ 311 (493)
T 3a74_A 233 HLKRLIVGGLEKVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLT 311 (493)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEECC
T ss_pred HHHHHhhcccCceEEECccccCCCCC-cccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCceEeeCCEeeccC
Confidence 997 5789999999999999999997 599999999999999999999999999999999999988763 224455
Q ss_pred ccccccchHHHHhhhhCCCC-CCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCccc
Q 012426 309 NTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAF 387 (464)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~-~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pf 387 (464)
.+|.+.++.++++.+.+.++ ..++.+++.+++++.|.+++....||..++..+|.++ ++.+. +|+||+|||..++||
T Consensus 312 ~pf~rity~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v-e~~~~-~p~fv~dyP~~~~pf 389 (493)
T 3a74_A 312 PEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKV-EDKLI-QPTFIYGHPVEISPL 389 (493)
T ss_dssp SSCEEEEHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHT-GGGCC-SCEEEECCBGGGCTT
T ss_pred CCcceeeHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHh-hcccC-CcEEEECCCcccCCc
Confidence 67888889999988877777 6778888988888888765434456777787788764 44455 799999999999999
Q ss_pred ccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc-----CCCccch---HHHHHHhhhhh--------h-
Q 012426 388 YMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGS--------G- 450 (464)
Q Consensus 388 y~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~-----g~~~~~~---~~yl~~~~~G~--------g- 450 (464)
||++++|+++++|||||++|+ ||+|||+|+||+++|++||++. ..+++.+ +|||+|++||+ |
T Consensus 390 ~~~~~~dp~~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGi 468 (493)
T 3a74_A 390 AKKNPDDPRFTDRFELFIVGR-EHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGGLGIGV 468 (493)
T ss_dssp BCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEEEEEEH
T ss_pred cCcCCCCCCeEEEEEEEeCCe-EEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCceeEEEcH
Confidence 999888999999999999998 9999999999999999999753 1244443 99999999998 2
Q ss_pred --HhhhhcCCCCCCCC
Q 012426 451 --LVFILIKVTNFLNC 464 (464)
Q Consensus 451 --L~mll~~~~~I~~~ 464 (464)
|||++||.+||||+
T Consensus 469 DRLvmlltg~~~IRdV 484 (493)
T 3a74_A 469 DRLVMLLTNSPSIRDV 484 (493)
T ss_dssp HHHHHHHHTCSSGGGT
T ss_pred HHHHHHHhCCCcHHhE
Confidence 99999999999986
No 12
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=3.1e-87 Score=703.89 Aligned_cols=408 Identities=22% Similarity=0.378 Sum_probs=348.4
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCe-EEEEEEeCcCCcceEEEEeCCc------cchhhhhcCCCCC
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDA------EGYDQVKSGLITT 82 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~-~Fi~LrD~sg~~~iQvv~~~~~------~~~~~~~~~~l~~ 82 (464)
++++|++|... ...|++|+|+|||+++|.+|++ +|++|||++| .||||++++. ..++.++. |+.
T Consensus 22 ~~~~~~~l~~~-----~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~~~~~~--l~~ 92 (487)
T 1eov_A 22 KRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQAS--LIQGLVKANKEGTISKNMVKWAGS--LNL 92 (487)
T ss_dssp CCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTE--EEEEEEECCSSSSSCHHHHHHHTT--CCT
T ss_pred ceeEHHHhccc-----ccCCCEEEEEEEEEEeeccCCccEEEEEEECCc--cEEEEEeccccccccHHHHHHHhc--CCC
Confidence 45668777652 2679999999999999999997 9999999997 4999998651 12445667 999
Q ss_pred CcEEEEEEEEEeCCC-----CCceEEEEEeeEEEEecCCCCCCCCccc---------------cchhhhhhcceecCCCc
Q 012426 83 GASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR---------------VSREFLRTKAHLRPRTN 142 (464)
Q Consensus 83 g~~V~V~G~v~~~~~-----~~~~~el~~~~i~vls~~~~~~P~~~~~---------------~~~~~~r~~r~l~~R~~ 142 (464)
||+|.|+|+|.+++. +.+++||++++++|||+|..++|++.++ .+.+.++++||||+|++
T Consensus 93 e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~ 172 (487)
T 1eov_A 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTV 172 (487)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSH
T ss_pred CCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCH
Confidence 999999999999984 3467999999999999998778986542 45678889999999999
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
.+++++++||+|++++|+||.++||+||+||+|+++++++++++|.+ +|+
T Consensus 173 ~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~------------------------------~~~ 222 (487)
T 1eov_A 173 TNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------------------------------TYF 222 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE------------------------------EET
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCccccee------------------------------ccC
Confidence 99999999999999999999999999999999999999999999976 367
Q ss_pred CcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccC-CHHHHHHHHHHHHHHHHHHHhhc
Q 012426 223 EKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDN 300 (464)
Q Consensus 223 ~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~~~dlm~~~e~li~~i~~~~~~~ 300 (464)
++++||+||||||+| +|++|++|||+||||||||++++.||+|||||||||++|. +++|+|+++|+||+++++.+.+.
T Consensus 223 ~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~ 302 (487)
T 1eov_A 223 KGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKR 302 (487)
T ss_dssp TEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999997 5689999999999999999999899999999999999997 59999999999999999999887
Q ss_pred CcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhh---hcccCCCeee
Q 012426 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIV 377 (464)
Q Consensus 301 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~~~~p~fI 377 (464)
+..++..+....+.. .+.-....||++++|.||++++++.|.+ ..|+.++..++|+.|++ +.+...|+||
T Consensus 303 ~~~~l~~~~~~~~~~---~~~~~~~~~~~ri~~~ea~~~l~~~g~~----~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v 375 (487)
T 1eov_A 303 FAHEIELVRKQYPVE---EFKLPKDGKMVRLTYKEGIEMLRAAGKE----IGDFEDLSTENEKFLGKLVRDKYDTDFYIL 375 (487)
T ss_dssp CHHHHHHHHHHSCCC---CCCCCTTCCCEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred chhHHHhhhhhcCCc---ceecccCCCeeEEEHHHHHHHHHHhCCC----CCcccchhhHHHHHHHHHHHHHhCCCCEEE
Confidence 765554332211110 0100112378999999999999988754 35677888899988764 2233367899
Q ss_pred eeCCCCCcccc-cccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCcc--chHHHHHHhhhhh-----
Q 012426 378 SDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGS----- 449 (464)
Q Consensus 378 ~~yP~~~~pfy-~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~--~~~~yl~~~~~G~----- 449 (464)
+|||..++||| |++++|+++++|||||++|+ ||+|||+|+||+++|++||++.|++++ .++|||+|++||+
T Consensus 376 ~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~-Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG 454 (487)
T 1eov_A 376 DKFPLEIRPFYTMPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAG 454 (487)
T ss_dssp ECCBGGGSCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEE
T ss_pred ECCccccChhhcCcCCCCCCeEEEEEEEeCCE-EEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeE
Confidence 99999999997 55566788999999999995 999999999999999999999999998 8999999999998
Q ss_pred ---h---HhhhhcCCCCCCCC
Q 012426 450 ---G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 ---g---L~mll~~~~~I~~~ 464 (464)
| |||+++|.+||||+
T Consensus 455 ~glGiDRLvmll~g~~~IRdV 475 (487)
T 1eov_A 455 GGIGLERVVMFYLDLKNIRRA 475 (487)
T ss_dssp EEEEHHHHHHHHTTCSSGGGG
T ss_pred EEEhHHHHHHHHcCCCcHHhe
Confidence 2 99999999999985
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=1.8e-84 Score=693.75 Aligned_cols=406 Identities=19% Similarity=0.288 Sum_probs=313.4
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
++++|++|... ..|++|+|+|||+++|.+|+++|++|||++|. ||||++.+...|+.++. |+.||+|.|+
T Consensus 3 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~--l~~e~~V~V~ 72 (580)
T 1l0w_A 3 RTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVRAK 72 (580)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred cEEEHHHhHHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChhHHHHHhc--CCCCcEEEEE
Confidence 68999999874 67999999999999999999999999999985 99999865434666777 9999999999
Q ss_pred EEEEeCCC-----CCceEEEEEeeEEEEecCCC-CCCCCc------c-ccchhhhhhcceecCCCccchhhhhHHHHHHH
Q 012426 90 GNVVPSQG-----SKQKVELKVNKIVLVGKSDP-SYPIQK------K-RVSREFLRTKAHLRPRTNTFGAVARVRNALAY 156 (464)
Q Consensus 90 G~v~~~~~-----~~~~~el~~~~i~vls~~~~-~~P~~~------~-~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~ 156 (464)
|+|.+++. +.|++||+|++++|||+|.+ ++|+.. + ..+.+.++++||||+|++.++++|++||+|++
T Consensus 73 G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~ 152 (580)
T 1l0w_A 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIK 152 (580)
T ss_dssp EEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 99999842 34669999999999999973 355543 2 23455556999999999999999999999999
Q ss_pred HHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc-ccccchhHH
Q 012426 157 ATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA-FLTVSGQLN 235 (464)
Q Consensus 157 ~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-yL~~Spql~ 235 (464)
++|+||.++||+||+||+|+++++||+.+ |.+ +++ .++... ||+||||||
T Consensus 153 ~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v-~~~---------------------------~~~~~~y~L~qSPQl~ 203 (580)
T 1l0w_A 153 AIWDFLDREGFVQVETPFLTKSTPEGARD-FLV-PYR---------------------------HEPGLFYALPQSPQLF 203 (580)
T ss_dssp HHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEE-ECT---------------------------TSTTEEEECCSCSHHH
T ss_pred HHHHHHHhCCcEEEeCCEEecCCCCCCCC-ccc-ccc---------------------------ccCCceeECccCHHHH
Confidence 99999999999999999999999998655 854 322 122223 599999999
Q ss_pred HH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCccccccccccccc
Q 012426 236 AE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEK 314 (464)
Q Consensus 236 lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~ 314 (464)
|| +|++|++||||||||||||++++.|| ||||||||||+|+|++|+|+++|+||+++++.+.+. ++..+|.+.
T Consensus 204 kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~-----~~~~pf~ri 277 (580)
T 1l0w_A 204 KQMLMVAGLDRYFQIARCFRDEDLRADRQ-PDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGV-----ELPLPFPRL 277 (580)
T ss_dssp HHHHHHTTCSEEEEEEEEECCCCCCSSCC-SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCC-----CCCSSCCEE
T ss_pred HHHHHHhccCCeEEEeceeeCCCCCCCcC-CCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhCC-----ccCCCccEE
Confidence 98 58999999999999999999986555 599999999999999999999999999999998642 111233333
Q ss_pred chHHHHhhhhCCCCC---------------------------------------CCCHHHHHHHHHhcCCCcccCCCccc
Q 012426 315 GIIDRLSTVAERDFV---------------------------------------QLSYTDAIELLIKAKKKFEFLVKWGC 355 (464)
Q Consensus 315 ~~~~~l~~~~~~~~~---------------------------------------~it~~ea~~~l~~~~~~~~~~~~~~~ 355 (464)
++.++++.+ |.+-| +-+.++..+.+++.|.+--..+.|+.
T Consensus 278 ty~eA~~~~-g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~ 356 (580)
T 1l0w_A 278 SYEEAMERY-GSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEE 356 (580)
T ss_dssp EHHHHHHHH-SSSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEET
T ss_pred EHHHHHHHh-cCCCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecC
Confidence 444443322 11000 00112222222222211000011222
Q ss_pred c-ccHHHHHH----------------------------------------------hhhhcccCCCeeeeeCCCC-----
Q 012426 356 D-LQSEHERY----------------------------------------------LTEEAFGGCPVIVSDYPKE----- 383 (464)
Q Consensus 356 ~-l~~~~e~~----------------------------------------------l~e~~~~~~p~fI~~yP~~----- 383 (464)
+ +...++++ |+++ .. +|+||||||..
T Consensus 357 ~~~~~~~~k~l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~-~~-~p~fV~dfP~~~~~~~ 434 (580)
T 1l0w_A 357 GGFSGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE-GF-RFLWVVDFPLLEWDEE 434 (580)
T ss_dssp TEEESTTHHHHGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCC-SC-CEEEEECCBSBCCCTT
T ss_pred ccccchhhhhhhHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhccccc-cc-CeEEEEcCCccccccc
Confidence 2 22222222 2222 23 79999999996
Q ss_pred -------CcccccccCC-------CC-Cc-eeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccc----hHHHHH
Q 012426 384 -------IKAFYMRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLD 443 (464)
Q Consensus 384 -------~~pfy~~~~~-------d~-~~-~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~----~~~yl~ 443 (464)
.+||||++++ || ++ +++|||+++|+ ||+|||+|+||+++|++||++.|++++. ++|||+
T Consensus 435 ~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~ 513 (580)
T 1l0w_A 435 EEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLE 513 (580)
T ss_dssp TSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHH
T ss_pred ccccccccCCccCCCchhhhhhcCCccceeeeEEEEEeCCE-EEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHH
Confidence 8999998876 45 36 89999999998 9999999999999999999999998876 889999
Q ss_pred Hhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 444 LRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 444 ~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|++||+ | |||+++|.+||||+
T Consensus 514 al~yG~PPhgG~glGlDRLvMll~g~~sIRdV 545 (580)
T 1l0w_A 514 ALEYGAPPHGGIAWGLDRLLALMTGSPSIREV 545 (580)
T ss_dssp HTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred HHhcCCCCCceEEEcHHHHHHHHcCCCcHHeE
Confidence 999998 2 99999999999985
No 14
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=9.8e-84 Score=690.14 Aligned_cols=407 Identities=19% Similarity=0.268 Sum_probs=323.0
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc-cchhhhhcCCCCCCcEEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWI 88 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V 88 (464)
++++|.+|... ..|++|+|+|||+++|.+|+++|++|||++|. ||||++.+. ..|+.++. |+.||+|.|
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~--l~~e~~V~V 71 (585)
T 1c0a_A 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCIQV 71 (585)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred ceeEHHHHHHH------hCCCEEEEEEEEEEEecCCCcEEEEEEECCee--EEEEEeCCchHHHHHHhc--CCCCCEEEE
Confidence 57889999874 67999999999999999999999999999985 999998653 23556777 999999999
Q ss_pred EEEEEeCCC-------CCceEEEEEeeEEEEecCCCCCCCCcc-ccchhhhhhcceecCCCccchhhhhHHHHHHHHHHH
Q 012426 89 QGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (464)
Q Consensus 89 ~G~v~~~~~-------~~~~~el~~~~i~vls~~~~~~P~~~~-~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ 160 (464)
+|+|.+++. +.|++||+|++++|||+|. ++|++.. ..+.+.++++||||+|++.++++|++||+|++++|+
T Consensus 72 ~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~-~lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~ 150 (585)
T 1c0a_A 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 (585)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC-SCSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEccCcccccccCCCccEEEEEeEEEEEeccC-CCCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999854 3467999999999999997 3555433 345566669999999999999999999999999999
Q ss_pred HhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH-HH
Q 012426 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TY 239 (464)
Q Consensus 161 ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll 239 (464)
||.++||+||+||+|+++++||+.+ |.| +++. +.+.-+||+|||||||| +|
T Consensus 151 fl~~~gFlEVeTPiL~~s~~eGAr~-F~v-~~~~--------------------------~~~~~y~L~qSPQl~kq~Lm 202 (585)
T 1c0a_A 151 FMDDHGFLDIETPMLTKATPEGARD-YLV-PSRV--------------------------HKGKFYALPQSPQLFKQLLM 202 (585)
T ss_dssp HHHHTTCEECCCCSSBCCCSSSSCC-CEE-ECSS--------------------------STTCEEECCSCSHHHHHHHH
T ss_pred HHHhCCcEEEeCCEEecCCCCCCcc-cee-cccc--------------------------cCCceEeCccCHHHHHHHHH
Confidence 9999999999999999999998765 855 3321 11222369999999998 57
Q ss_pred hhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHH
Q 012426 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319 (464)
Q Consensus 240 ~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 319 (464)
++|++||||||||||||++++.|| ||||||||||+|+|++|+|+++|+||+++++.+.+.+.. .|.+.++.++
T Consensus 203 v~G~~rvfqI~~~FR~E~~~t~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~~~------~f~r~ty~ea 275 (585)
T 1c0a_A 203 MSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLG------DFPVMTFAEA 275 (585)
T ss_dssp HTTCCEEEEEEEEECCCCCBTTBC-SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCC------SCCEEEHHHH
T ss_pred hcCCCceEEEeceeecCCCCCCcC-cccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCcc------ccceeeHHHH
Confidence 999999999999999999986555 599999999999999999999999999999998764311 0222222222
Q ss_pred Hhhhh---------------------------------------------CCCCCCCCHHHHHHHHHhcCCCcccCCCcc
Q 012426 320 LSTVA---------------------------------------------ERDFVQLSYTDAIELLIKAKKKFEFLVKWG 354 (464)
Q Consensus 320 l~~~~---------------------------------------------~~~~~~it~~ea~~~l~~~~~~~~~~~~~~ 354 (464)
++.+- +.+|++.+++++.+++++.|.+--..+.|+
T Consensus 276 ~~~~g~dkpd~r~~~~l~d~~~~~~~~~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~ 355 (585)
T 1c0a_A 276 ERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVN 355 (585)
T ss_dssp HHHHSCSSCCTTSCCCEEECHHHHTTCSCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCCEEEES
T ss_pred HHHhcCCCccccCCceeEEehhhhccCCcceehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCceeEEec
Confidence 22110 113566788889888887653200001222
Q ss_pred c------cccHHHHHH-----------------------------------------------hhhhcccCCCeeeeeCC
Q 012426 355 C------DLQSEHERY-----------------------------------------------LTEEAFGGCPVIVSDYP 381 (464)
Q Consensus 355 ~------~l~~~~e~~-----------------------------------------------l~e~~~~~~p~fI~~yP 381 (464)
+ ++...++++ |+++... +|+||||||
T Consensus 356 ~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~~-~p~fV~dfP 434 (585)
T 1c0a_A 356 ERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKW-APLWVIDFP 434 (585)
T ss_dssp CGGGGGGGEECTTGGGSCHHHHHHHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSCC-CEEEEECCB
T ss_pred ccccccccccchhhhhcCHHHHHHHHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCccccccc-ccEEEEeCC
Confidence 2 121211111 1222122 699999999
Q ss_pred CC-----------CcccccccCC-------CC-Cc-eeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccc----
Q 012426 382 KE-----------IKAFYMRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS---- 437 (464)
Q Consensus 382 ~~-----------~~pfy~~~~~-------d~-~~-~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~---- 437 (464)
.. .+||||++++ || ++ +++|||+++|+ ||+|||+|+||+++|++||++.|++++.
T Consensus 435 ~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~ 513 (585)
T 1c0a_A 435 MFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREK 513 (585)
T ss_dssp SEEECSSSCEEESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccccccccccccccCCccCCCchhhhhhccCCcceeeeEEEEEECCE-EEeeeeeecCCHHHHHHHHHHcCCChHHHHhh
Confidence 96 8999998876 46 36 89999999998 9999999999999999999999999876
Q ss_pred hHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 438 YWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 438 ~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++|||+|++||+ | |||+++|.+||||+
T Consensus 514 ~~~yL~al~yG~PPhgG~glGlDRLvmlltg~~sIRdV 551 (585)
T 1c0a_A 514 FGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDV 551 (585)
T ss_dssp HHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred HHHHHHHHhcCCCCceeEEEcHHHHHHHHcCCCcHHhe
Confidence 899999999998 2 99999999999985
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=8.6e-73 Score=602.46 Aligned_cols=411 Identities=18% Similarity=0.213 Sum_probs=308.6
Q ss_pred CCCCccc-ccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhhhhc
Q 012426 2 GSKVGEF-RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKS 77 (464)
Q Consensus 2 ~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~~~~ 77 (464)
-|....| .++++|.+|... ..|++|+|+|||+++|.+ +|++|||++|. ||||++++.. .++.++.
T Consensus 2 ~~~~~~~~~rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~~ 70 (617)
T 4ah6_A 2 IPEFSSFVVRTNTCGELRSS------HLGQEVTLCGWIQYRRQN---TFLVLRDFDGL--VQVIIPQDESAASVKKILCE 70 (617)
T ss_dssp -CCCSCSSSCSSCGGGCCGG------GTTCEEEEEEEECCCCTT---TEEEEECSSCE--EEEECCCSSSSHHHHHHHHH
T ss_pred CccccccccCceEHHHhHHH------hCCCEEEEEEEeeeecCe---EEEEEEeCCcC--EEEEEeCCcCcHHHHHHHhc
Confidence 3455555 788999999985 689999999999999975 59999999974 9999987642 3556778
Q ss_pred CCCCCCcEEEEEEEEEeCCC-------CCceEEEEEeeEEEEecCCCCCCCCcccc---chhhhhhcceecCCCccchhh
Q 012426 78 GLITTGASIWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPRTNTFGAV 147 (464)
Q Consensus 78 ~~l~~g~~V~V~G~v~~~~~-------~~~~~el~~~~i~vls~~~~~~P~~~~~~---~~~~~r~~r~l~~R~~~~~~~ 147 (464)
|+.||+|.|+|+|++++. ..+++||++++|+|||+|. ++|++.+.+ +.+.++++||||+|++.++++
T Consensus 71 --l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~ 147 (617)
T 4ah6_A 71 --APVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYN 147 (617)
T ss_dssp --CCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHH
T ss_pred --CCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeecchHHHHH
Confidence 999999999999998542 2357999999999999998 788876543 344455999999999999999
Q ss_pred hhHHHHHHHHHHHHhh-hCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc
Q 012426 148 ARVRNALAYATHKFFQ-ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~-~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 226 (464)
|++||++++++|+||. ++||+||+||+|+++++||+. .|.+. ++ .++..+
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~-~F~v~-~~---------------------------~~g~~~ 198 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAK-EFLVP-SR---------------------------EPGKFY 198 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSC-CCEEE-CS---------------------------STTCEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCc-Cceec-cc---------------------------cCCccc
Confidence 9999999999999996 799999999999998888765 58553 21 246778
Q ss_pred ccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 012426 227 FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305 (464)
Q Consensus 227 yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i 305 (464)
||+|||||||| +|++|++||||||||||||+++ .+|+||||||||||+|+|++|+|+++|+|++++++.+..
T Consensus 199 ~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~-t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~~------ 271 (617)
T 4ah6_A 199 SLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSR-PDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKD------ 271 (617)
T ss_dssp ECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSC-SSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSSC------
T ss_pred ccccCHHHHHHHHHhcccCcEEEEEhheecccCC-CCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhcC------
Confidence 99999999997 5789999999999999999997 567999999999999999999999999999998764321
Q ss_pred cccccccccchHHHHhhhhCCC-----------------------------------------------CCCCCHHHHHH
Q 012426 306 DFFNTWIEKGIIDRLSTVAERD-----------------------------------------------FVQLSYTDAIE 338 (464)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~-----------------------------------------------~~~it~~ea~~ 338 (464)
++..+|.+.++.+++..+ |.+ +.|-..++..+
T Consensus 272 ~~~~pf~r~ty~eA~~~y-gsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e 350 (617)
T 4ah6_A 272 PVVVPFPTMTFAEVLATY-GTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRN 350 (617)
T ss_dssp CCCSSCCEEEHHHHHHHT-SSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHH
T ss_pred ccCCCceEeEHHHHHHHH-cCCCCccccCcccccHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHH
Confidence 111223333333333221 110 11111222222
Q ss_pred HHHh-cCCC-----------cccCC------------------Cccccc------cHHHHHHh-------hhhc------
Q 012426 339 LLIK-AKKK-----------FEFLV------------------KWGCDL------QSEHERYL-------TEEA------ 369 (464)
Q Consensus 339 ~l~~-~~~~-----------~~~~~------------------~~~~~l------~~~~e~~l-------~e~~------ 369 (464)
..+. .|.. +..|+ +.|+.+ .......| .+.+
T Consensus 351 ~ak~~~g~ggl~~~~~~d~~~~~~I~Kflsee~~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~ 430 (617)
T 4ah6_A 351 FAADHFNQEILPVFLNANRNWNSPVANFIMESQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVV 430 (617)
T ss_dssp HHHHSSCCCEEEECSSTTTTSSCTTHHHHHHHHHHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHhcCCceEEEEEecCCccccchhhhcCHHHHHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhcccc
Confidence 2222 1110 00000 001100 00000000 1111
Q ss_pred -c---cCCCeeeeeCCCC-------------CcccccccCCC-------C--CceeeEEEeeCCccccccCccccccHHH
Q 012426 370 -F---GGCPVIVSDYPKE-------------IKAFYMRQNDD-------G--RTVAAMDMLVPRIGELIGGSQREERLEY 423 (464)
Q Consensus 370 -~---~~~p~fI~~yP~~-------------~~pfy~~~~~d-------~--~~~~~fdl~~~GigEi~~G~~r~~d~~~ 423 (464)
. .-.++||+|||.. ..||.|+..+| | -.+.+|||+++|+ ||+|||+|+||++.
T Consensus 431 l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g~-El~~gs~ri~~~~~ 509 (617)
T 4ah6_A 431 LRDPTLFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGN-EIGGGSIRIHNAEL 509 (617)
T ss_dssp SCCTTSCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTSTHHHHSTTSSBCCCEEEEETTE-EEEEEECCCCSHHH
T ss_pred ccCCCCeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHHHhhcChhhhhhceEEEEECCE-EEeeeeEEcCCHHH
Confidence 0 1258999999974 36888876543 2 3578999999996 99999999999999
Q ss_pred HHHHHH-HcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 424 LEGRLD-ELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 424 l~~r~~-~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|+++|+ ..|++++.++|||+|++||+ | |||+++|.+||||+
T Consensus 510 q~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~irdv 562 (617)
T 4ah6_A 510 QRYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDV 562 (617)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGGGS
T ss_pred HHHHHHHhhccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchheE
Confidence 999999 78999889999999999998 2 99999999999996
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=2.6e-65 Score=515.38 Aligned_cols=285 Identities=16% Similarity=0.140 Sum_probs=227.5
Q ss_pred cCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCC-CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 138 ~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
..|++ .+++|++||+|++++|+||.++||+||+||+|++++++ +++++|.+....+
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~---------------------- 83 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGP---------------------- 83 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCS----------------------
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCc----------------------
Confidence 44555 88999999999999999999999999999999987765 5789997632110
Q ss_pred ccccccCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 295 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~ 295 (464)
..-.+.++||+|||||||| ++++|++||||||||||||++ +.||+|||||||||++|+|++|+|+++|+||+++++
T Consensus 84 --~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 84 --GHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD 160 (345)
T ss_dssp --TTSCCEEEEECSCSHHHHHHHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC
T ss_pred --ccccCCCEeecCCHHHHHHHHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc
Confidence 0001278999999999998 789999999999999999999 799999999999999999999999999999999986
Q ss_pred HHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCcc-ccccHHHHHHhhh---hcc-
Q 012426 296 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG-CDLQSEHERYLTE---EAF- 370 (464)
Q Consensus 296 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~-~~l~~~~e~~l~e---~~~- 370 (464)
. .+|.+.++.+++++++|.+.+.++++++.+++++.|... +.++ .++..++|+++.+ +.+
T Consensus 161 ~------------~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~---~~~~~~~~~~~~e~~l~~~ve~~lg 225 (345)
T 3a5y_A 161 C------------PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSN---VADTEEDRDTLLQLLFTFGVEPNIG 225 (345)
T ss_dssp C------------CCCEEEEHHHHHHHHTCCCTTCCC---------------------------HHHHHHHHHHTGGGSS
T ss_pred C------------CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcc---cCCCcCCHhHHHHHHHHHHHHHHcC
Confidence 1 257778889999988888888889999999888877541 2344 4566677776653 333
Q ss_pred cCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc-------CCCccch-HHHH
Q 012426 371 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-------KLNRDSY-WWYL 442 (464)
Q Consensus 371 ~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~-------g~~~~~~-~~yl 442 (464)
..+|+||||||..++||++..++++.+++|||||++|+ ||+|||+|+||+++|++||++. |+++..+ +|||
T Consensus 226 ~~~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~G~-Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl 304 (345)
T 3a5y_A 226 KEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGI-ELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLI 304 (345)
T ss_dssp SSSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHH
T ss_pred CCCEEEEECCChhhChhhCCCCCCCCeEEEEEEEECCE-EEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 23799999999999999987777788999999999998 9999999999999999999875 8999888 6999
Q ss_pred HHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 443 DLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 443 ~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+|++||+ | |||+++|.+||||+
T Consensus 305 ~al~yG~PPhgG~glGiDRLvmll~g~~~IRdV 337 (345)
T 3a5y_A 305 EALKVGMPDCSGVALGVDRLVMLALGAETLAEV 337 (345)
T ss_dssp HHHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred HHHhcCCCCCcEEEEcHHHHHHHHcCCCcHheE
Confidence 9999998 3 99999999999985
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=4.8e-57 Score=447.37 Aligned_cols=257 Identities=23% Similarity=0.385 Sum_probs=225.5
Q ss_pred hcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeec--------CCCCCCCCceeeecCCCcccccCCCC
Q 012426 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS--------DCEGAGEQFCVTTLIPSSREAAESPV 204 (464)
Q Consensus 133 ~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~--------~~eg~~~~F~vt~~~~~~~~~~~~~~ 204 (464)
+||++|+|++ +++++++|++|++++|+||.++||+||+||+|+++ .+|+ +++|.+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~--------------- 63 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEV--------------- 63 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEE---------------
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEE---------------
Confidence 4899999999 99999999999999999999999999999999999 8888 888865
Q ss_pred CCCCCCCCCCccccccccCcccccccchhHHHH-HHhhccCceEEEccccccCC--CCCccccccchhccceeccCCHHH
Q 012426 205 DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 205 ~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~--~~t~rHl~EFtmlE~e~a~~~~~d 281 (464)
+|+++++||++|||+|+| ++++|++|||+||||||+|+ ++|.||+|||||||+|++|.|++|
T Consensus 64 ---------------~~~~~~~~L~~Spe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~ 128 (294)
T 1nnh_A 64 ---------------EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMED 128 (294)
T ss_dssp ---------------EETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHH
T ss_pred ---------------EcCCCCEEeccChHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHH
Confidence 477889999999999997 46778999999999999999 887899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHH
Q 012426 282 DMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361 (464)
Q Consensus 282 lm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~ 361 (464)
+|+++|+|++.+++.+.+....+++ .++. |+|++|.||++. ||. ++
T Consensus 129 l~~~~e~l~~~l~~~~~~~~~~~i~----------------~~~~-~~r~~y~ea~~~-------------~g~----~~ 174 (294)
T 1nnh_A 129 IMRLIERLVYGLFRKAEEWTGREFP----------------KTKR-FEVFEYSEVLEE-------------FGS----DE 174 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCC----------------CCSS-CEEEEHHHHHHH-------------TSS----HH
T ss_pred HHHHHHHHHHHHHHHHHhhhccccc----------------cCCC-ceEeEHHHHHHH-------------hCC----hH
Confidence 9999999999999887642111110 1233 899999999852 332 34
Q ss_pred HHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeC-CccccccCccccccHHHHHHHHHHcCCCccchHH
Q 012426 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWW 440 (464)
Q Consensus 362 e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~-GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~ 440 (464)
|+ ++. .. .|+||+||| +|||++. |++++++||||++ |+|||+|||+|++|++.|.++++..|++++.|+|
T Consensus 175 er--~~~-~~-~P~~v~~~P---~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~ 245 (294)
T 1nnh_A 175 KA--SQE-ME-EPFWIINIP---REFYDRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRP 245 (294)
T ss_dssp HH--HHH-CS-SCEEEECCC---CCTTBCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH
T ss_pred hh--hhh-cC-CCEEEEcCC---hHHhCCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHH
Confidence 54 333 33 799999999 9999987 7889999999999 9999999999999999999999999999999999
Q ss_pred HHHHhhhhh---------h---HhhhhcCCCCCCCC
Q 012426 441 YLDLRHYGS---------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 441 yl~~~~~G~---------g---L~mll~~~~~I~~~ 464 (464)
||++++||+ | |+|+++|.+||||+
T Consensus 246 ~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdv 281 (294)
T 1nnh_A 246 YLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEV 281 (294)
T ss_dssp HHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred HHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHE
Confidence 999999987 3 99999999999985
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.85 E-value=7.6e-23 Score=202.15 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=129.0
Q ss_pred CCCCceEEEEEeeEEEEecCCCCCCCCccccchhhhhhcceecCCCccchhhhhH-----HHHHHHHHHHHhhhCCcEEE
Q 012426 96 QGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-----RNALAYATHKFFQENGFIWI 170 (464)
Q Consensus 96 ~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~-----rs~i~~~~r~ff~~~gF~EV 170 (464)
+++.+++||++++++||++|..++|++.+.. ..++++||||+|++.+.++++. ++++.+.+|++|.+.||.||
T Consensus 21 ~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV 98 (290)
T 3qtc_A 21 ASAPALTKSQTDRLEVLLNPKDEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEI 98 (290)
T ss_dssp ---CCCCHHHHHHHHHHCCTTCC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCceEEEEhhhhhhhccCCCCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEEE
Confidence 3445679999999999999987789876544 3377999999999999999999 99999999999999999999
Q ss_pred eCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc--cchhHHHHHH--h---hcc
Q 012426 171 SSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT--VSGQLNAETY--A---TAL 243 (464)
Q Consensus 171 ~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~--~Spql~lqll--~---~g~ 243 (464)
.||+|++..+.. ..+ ++..++ + .....+++...+|+ +|||++..+. . .+.
T Consensus 99 ~Tp~l~~~~~~~--~~~-~~~~~p---------~-----------~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p 155 (290)
T 3qtc_A 99 KSPILIPLEYIE--RMG-IDNDTE---------L-----------SKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDP 155 (290)
T ss_dssp CCCSEEETHHHH--HTT-CCTTSS---------G-----------GGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSS
T ss_pred ECCceeeHHHHH--hcC-CCcCCc---------h-----------hhhheeeCCCeeEcccChHHHHHHHHHhhccCCCC
Confidence 999999875321 111 111111 0 00113567788999 9999997542 2 456
Q ss_pred CceEEEccccccCCCCCccccccchhccceeccCC--HHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDMACATAYLQY 292 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~--~~dlm~~~e~li~~ 292 (464)
.|+||||+|||+|.. +.+|++||||+|+++++.+ +.++..+++++++.
T Consensus 156 ~rlfeiG~vFR~E~~-~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~ 205 (290)
T 3qtc_A 156 IKIFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNH 205 (290)
T ss_dssp EEEEEEEEEECCCSC-SSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCEEecCCC-CCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHH
Confidence 899999999999977 5899999999999999974 77777777776654
No 19
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.68 E-value=3.3e-16 Score=151.77 Aligned_cols=264 Identities=11% Similarity=0.036 Sum_probs=188.6
Q ss_pred hhhHHHHHHHHHHHHhh-----hCCcEEEeCceEeecCCCCCCC----CceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 012426 147 VARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGAGE----QFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~-----~~gF~EV~TP~L~~~~~eg~~~----~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (464)
.++-....+..+++||. +.|+++|..|+++....+-+.+ --.|+ +
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~--------------------------f 57 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQ--------------------------V 57 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCE--------------------------E
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecce--------------------------E
Confidence 45677888999999999 8999999999999865432211 00111 0
Q ss_pred cc-cccCcccccccchhHHHHHH-h-hcc---CceEEEccccccCCC-CCccccccchhccceeccCCHHHHHHHHHHHH
Q 012426 218 SQ-DFFEKPAFLTVSGQLNAETY-A-TAL---SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACATAYL 290 (464)
Q Consensus 218 ~~-~~f~~~~yL~~Spql~lqll-~-~g~---~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li 290 (464)
+. +.-+..+-+.+|--.|||+. . .+| +.+|+-.++-|.++- .+.+|.-+|.|.|||.....-+..|+++++.+
T Consensus 58 ~i~~~~~~~~eivhSLaKWKR~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV 137 (330)
T 12as_A 58 KVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTV 137 (330)
T ss_dssp CCSSSTTCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHH
T ss_pred ecccCCCceEEEeeeHHHHHHHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHH
Confidence 00 11155677899999999964 3 357 999999999998654 56999999999999999988888899999998
Q ss_pred HHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcc
Q 012426 291 QYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF 370 (464)
Q Consensus 291 ~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~ 370 (464)
+.|...+...-. .+ ...+ .+.+.+..++..||.+|+.+.+ ++.-.++-|..+++.+
T Consensus 138 ~~Iy~~ik~tE~-~~--~~~y-------~l~p~Lp~~i~fitsqeL~~~Y-------------P~lt~keRE~~i~ke~- 193 (330)
T 12as_A 138 EAIWAGIKATEA-AV--SEEF-------GLAPFLPDQIHFVHSQELLSRY-------------PDLDAKGRERAIAKDL- 193 (330)
T ss_dssp HHHHHHHHHHHH-HH--HHHS-------CCCCCSCSSCEEEEHHHHHHHS-------------SSSCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHH-HH--HHHh-------ccCcCCCCceEEEeHHHHHHHc-------------CCCChHHHHHHHHHhh-
Confidence 877776653210 00 0000 0111244566678888876653 2222345566666654
Q ss_pred cCCCeeeeeCCCCCcc--cccccCC-CCCce---------eeEEEee-----CCccccccCccccccHHHHHHHHHHcCC
Q 012426 371 GGCPVIVSDYPKEIKA--FYMRQND-DGRTV---------AAMDMLV-----PRIGELIGGSQREERLEYLEGRLDELKL 433 (464)
Q Consensus 371 ~~~p~fI~~yP~~~~p--fy~~~~~-d~~~~---------~~fdl~~-----~GigEi~~G~~r~~d~~~l~~r~~~~g~ 433 (464)
.||||++.|..++- ++....+ -+... .+.||++ .+..||.+++.| .|++.|.++++..|.
T Consensus 194 --gaVFii~IG~~L~~g~~HD~RaPDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~ 270 (330)
T 12as_A 194 --GAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGD 270 (330)
T ss_dssp --SEEEEECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTC
T ss_pred --CCEEEEecCCccCCCCcCcCcCCCCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHHHcCC
Confidence 69999999966432 3322222 12344 8899999 466799999999 999999999999999
Q ss_pred CccchHHHHHHhhhhh---------h---HhhhhcCCCCCCC
Q 012426 434 NRDSYWWYLDLRHYGS---------G---LVFILIKVTNFLN 463 (464)
Q Consensus 434 ~~~~~~~yl~~~~~G~---------g---L~mll~~~~~I~~ 463 (464)
......+|..++..|. | |+|+|++...|.+
T Consensus 271 ~er~~~~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGE 312 (330)
T 12as_A 271 EDRLELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQ 312 (330)
T ss_dssp TTGGGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGG
T ss_pred ChhhccHHHHHHHcCCCCccccccccHHHHHHHHhccchhhe
Confidence 8888889999887765 3 9999999999865
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.23 E-value=1.1e-11 Score=121.94 Aligned_cols=100 Identities=17% Similarity=0.288 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (464)
.....++.+.+|++|...||.||.||.|++... +..+ +.|.+ . +.
T Consensus 70 ~h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~--~---------------------------np 120 (288)
T 3dsq_A 70 RPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQ--V---------------------------FW 120 (288)
T ss_dssp SCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTT--S---------------------------CE
T ss_pred cCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEe--e---------------------------cc
Confidence 344578899999999999999999999998431 1100 11111 0 11
Q ss_pred cCcccccc--cchhHHH--HHHhhccC---ceEEEccccccCCCCCccccccchhccceeccC
Q 012426 222 FEKPAFLT--VSGQLNA--ETYATALS---NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (464)
Q Consensus 222 f~~~~yL~--~Spql~l--qll~~g~~---rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 277 (464)
.+...+|+ .+|.+.. +.....-+ |+|++|+|||+|..+ ..|.+||+|+|++....
T Consensus 121 l~e~~~LRp~l~p~l~~~~r~~~~~~~~PlrlfeiG~vFR~E~~~-~~r~~EF~qle~~i~g~ 182 (288)
T 3dsq_A 121 LDGKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQG-AQHLNEFTMLNLTELGT 182 (288)
T ss_dssp EETTEEECSCSHHHHHHHHHHHTTTSCSCEEEEEEEEEECSCCSS-SCCCSEEEEEEEEEETC
T ss_pred cccchhhhhcChHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCCC-CCcCccEEEEEEEEEcC
Confidence 12345676 3465542 22222233 899999999999985 78999999999998664
No 21
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.11 E-value=6.5e-11 Score=116.72 Aligned_cols=125 Identities=9% Similarity=0.056 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCC-ceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ-FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~-F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (464)
.....+++.+.+|++|...||.||++|.+.+.... .... | .+.++ +++.- +.-|....
T Consensus 51 ~~~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~n-f~~l~~-~~~~p------ar~~~-------------d~~~l~e~ 109 (294)
T 2rhq_A 51 SKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYN-FEALNL-PKSHP------ARDMQ-------------DSFYITDE 109 (294)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHH-TGGGTC-CTTCG------GGCTT-------------TSCBSSSS
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEcCcceeeehhh-HHhhCC-CCCcc------ccccC-------------CcEEEcCc
Confidence 34556788999999999999999999998764211 1111 2 11111 11000 00011233
Q ss_pred cccccchhHHH-HHHhhc----cCceEEEccccccCCCCCccccccchhccceecc--CCHHHHHHHHHHHHHHH
Q 012426 226 AFLTVSGQLNA-ETYATA----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 293 (464)
Q Consensus 226 ~yL~~Spql~l-qll~~g----~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~~~~dlm~~~e~li~~i 293 (464)
.+|++|.--.+ ++++.+ -.|+||||+|||+++.+ .+|+|||+|||+++++ .|+.+++..++.+++.+
T Consensus 110 ~vLRtsl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~d-~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 110 ILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSDD-ATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp EEECSSSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCCB-TTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ceeeccCHHHHHHHHHhcCCCCCccEEEEcCEEecCCCC-CCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 45655555555 788776 67999999999998764 6799999999999999 57999999999888765
No 22
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.03 E-value=5.5e-10 Score=112.25 Aligned_cols=133 Identities=11% Similarity=-0.027 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCC-ceeeecCCCcccccCC---CCC-CCCCCCCCCccccccccC
Q 012426 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ-FCVTTLIPSSREAAES---PVD-AIPKTKDGLIDWSQDFFE 223 (464)
Q Consensus 149 ~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~-F~vt~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~f~ 223 (464)
...+++.+.+|++|...||.||.+|.+.+.... .... | ...|+++..+++.. |.. ..+..+. .-.
T Consensus 101 hp~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~n-fd~L~~-p~~hpar~~~dt~~l~nP~s~~~~~~~~--------~~~ 170 (350)
T 1b7y_A 101 HPITLMERELVEIFRALGYQAVEGPEVESEFFN-FDALNI-PEHHPARDMWDTFWLTGEGFRLEGPLGE--------EVE 170 (350)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHH-TTTTTC-CSSSTTTTSSCCCBEECSSCCCBCTTSC--------BCC
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECcchhcchhH-HHhhCC-CCCCccccccccEEEcCccccccccccc--------ccc
Confidence 445778899999999999999999999774210 0111 1 11122111000000 000 0000000 000
Q ss_pred cc--cccccchhHHHHHHhhcc--CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 224 KP--AFLTVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 224 ~~--~yL~~Spql~lqll~~g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
.. +..++||.+. +++..+- -|+|+||+|||+|+.+ .+|+|||+|||+++++. |+.|++..++.+++.+
T Consensus 171 ~~~vLRt~tsp~ll-r~l~~~~~piriFEiGrVFR~d~~d-~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 171 GRLLLRTHTSPMQV-RYMVAHTPPFRIVVPGRVFRFEQTD-ATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp SCEEECSSSTHHHH-HHHHHCCSSEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred ccceeeccchHHHH-HHHHhcCCCeeEEEeeeEEECCCCC-CCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 11 2345566554 7666543 4799999999999875 68999999999999987 7999999999888664
No 23
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=98.39 E-value=4.5e-07 Score=90.03 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~y 227 (464)
...-+.+...+|++|...||.|+.+|.+.+.... ...+. +. ..|++++. + +.-|.+....
T Consensus 106 ~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~n-Fd~Ln-~p-----~dhpaR~~----------~---dt~~i~e~~v 165 (327)
T 3pco_A 106 LHPVTRTIDRIESFFGELGFTVATGPEIEDDYHN-FDALN-IP-----GHHPARAD----------H---DTFWFDTTRL 165 (327)
T ss_dssp CCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCC-CCTTT-CC-----SSSHHHHH----------T---TCCBSSSSCE
T ss_pred CCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHH-HHhhC-CC-----CCChhhcc----------c---ccEEeCCCce
Confidence 3445677899999999999999999988654322 11111 11 11111100 0 0011122223
Q ss_pred c--ccchhHHHHHHhhccC--ceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHHH
Q 012426 228 L--TVSGQLNAETYATALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVV 294 (464)
Q Consensus 228 L--~~Spql~lqll~~g~~--rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i~ 294 (464)
| ++||.+ ++.+..+-. |+|++|+|||++ . ..+|+|+|+|+|+..... ++.++...++.+++.++
T Consensus 166 LRThtsp~~-lr~l~~~~~pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lf 235 (327)
T 3pco_A 166 LRTQTSGVQ-IRTMKAQQPPIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFF 235 (327)
T ss_dssp ECSCTHHHH-HHHHTTCCSSCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred ecccCCHHH-HHHHHhCCCCeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 4 455654 466665544 899999999998 4 489999999999887754 69999999998887763
No 24
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.36 E-value=2.7e-07 Score=96.40 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=87.1
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeC-ceEeecCCCCCCCCceeeecCCCcccccCC---CC----------CCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISS-PIITASDCEGAGEQFCVTTLIPSSREAAES---PV----------DAIPK 209 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~T-P~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~~----------~~~~~ 209 (464)
....+...+++...+|++|...||.||.| |.+.+.... ...++...+|+++..|++.. |. +++..
T Consensus 220 ~~G~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~N-FDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~ 298 (508)
T 3l4g_A 220 DSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWN-FDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKR 298 (508)
T ss_dssp CCCBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHH-TGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHH-HHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhh
Confidence 34556777889999999999999999875 777764322 22233223333332222111 11 01111
Q ss_pred CC-CCCccccccccCc--------ccccccchhHHH-HHHhh-----c--cCceEEEccccccCCCCCccccccchhccc
Q 012426 210 TK-DGLIDWSQDFFEK--------PAFLTVSGQLNA-ETYAT-----A--LSNVYTFGPTFRAENSNTSRHLAEFWMIEP 272 (464)
Q Consensus 210 ~~-~~~~~~~~~~f~~--------~~yL~~Spql~l-qll~~-----g--~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~ 272 (464)
+| +|. +....|+. ..-|+++-=-.+ ++|.. + =-|+|+||+|||+|..+ .+|+|+|+|+|+
T Consensus 299 ~He~g~--~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~D-atHlpeFhQleg 375 (508)
T 3l4g_A 299 THSQGG--YGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLD-ATHLAEFHQIEG 375 (508)
T ss_dssp HHHTCB--TTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCC-SSSCSEEEEEEE
T ss_pred hhhccc--cCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCC-CCcCCeEEEEEE
Confidence 22 111 00111222 234544432222 44432 2 23799999999999985 799999999999
Q ss_pred eeccC--CHHHHHHHHHHHHHHH
Q 012426 273 ELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 273 e~a~~--~~~dlm~~~e~li~~i 293 (464)
.++.. ++.+++..++.+++.+
T Consensus 376 l~~~~~v~f~dLKg~Le~~l~~l 398 (508)
T 3l4g_A 376 VVADHGLTLGHLMGVLREFFTKL 398 (508)
T ss_dssp EEEEESCCHHHHHHHHHHHHHTT
T ss_pred EEECCCCCHHHHHHHHHHHHHHc
Confidence 88754 7999999888876553
No 25
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.16 E-value=4.6e-06 Score=87.01 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=78.4
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC----CC----CCCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD----CE----GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~----~e----g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++.+|.+.+|+.|.+.||.||.||+|.+.. ++ -..++|.+++.
T Consensus 62 ~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~---------------------- 119 (458)
T 2i4l_A 62 WLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADR---------------------- 119 (458)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECT----------------------
T ss_pred ECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeC----------------------
Confidence 4566789999999999999999999999999999853 11 13455655321
Q ss_pred ccccccccCcccccccch-hHHH---HHHhhcc----CceEEEccccccCCCCCcc----ccccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSG-QLNA---ETYATAL----SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Sp-ql~l---qll~~g~----~rVfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~a~~~~~dl 282 (464)
-++.++|+... +..- +..+... -|+|+|++|||+|.. ++ -..||+|.|+|.-..+..++
T Consensus 120 -------~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~--p~~Gl~R~REF~q~d~~~f~~~~~~a 190 (458)
T 2i4l_A 120 -------HKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQR--PRFGVMRGREFLMKDAYSFDVDEAGA 190 (458)
T ss_dssp -------TCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSS--CBTGGGBCSEEEEEEEEEEESSHHHH
T ss_pred -------CCCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCC--CCCCcccccceEEeEEEEEECCHHHH
Confidence 13455666432 3322 2222222 489999999999943 23 34799999999977666555
Q ss_pred HHHHHHH
Q 012426 283 MACATAY 289 (464)
Q Consensus 283 m~~~e~l 289 (464)
-..+..+
T Consensus 191 d~e~~~~ 197 (458)
T 2i4l_A 191 RKSYNKM 197 (458)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 26
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.13 E-value=2.4e-06 Score=87.56 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=78.7
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+|+.|.+.||.||.||+|.+..- . | ..++|. .+.
T Consensus 25 ~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~-~d~---------------------- 81 (401)
T 1evl_A 25 WHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSS---------------------- 81 (401)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE-EEE----------------------
T ss_pred ECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe-Eec----------------------
Confidence 34556889999999999999999999999999998641 1 1 123443 211
Q ss_pred ccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCcc----ccccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~a~~~~~dl 282 (464)
-+..++|+...+-.. ++++.. + -|+|+||+|||+|.+ +++ -..||+|.|+|. |.+..++
T Consensus 82 -------~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~p~~Gl~R~reF~q~d~~~-f~~~~~~ 152 (401)
T 1evl_A 82 -------ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQI 152 (401)
T ss_dssp -------TTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGH
T ss_pred -------CCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCC-cccccccccCcEEecceEE-eCCHHHH
Confidence 134556765554444 444321 2 489999999999986 233 246999999995 6665555
Q ss_pred HHHHHHHHH
Q 012426 283 MACATAYLQ 291 (464)
Q Consensus 283 m~~~e~li~ 291 (464)
....++++.
T Consensus 153 ~~e~~e~i~ 161 (401)
T 1evl_A 153 RDEVNGCIR 161 (401)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
No 27
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.10 E-value=4.2e-06 Score=86.35 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=74.1
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (464)
......+++..|.+.+++.+.+.||.||.||+|..... + |...-|.- .. +
T Consensus 167 ~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~-em------------------------y-- 219 (425)
T 2dq3_A 167 IAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEE-DL------------------------Y-- 219 (425)
T ss_dssp EETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGG-GS------------------------C--
T ss_pred ECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChh-hh------------------------e--
Confidence 34667889999999999999999999999999998541 1 11111210 00 0
Q ss_pred cccCcccccccchhHHH-HHHhh------c-cCceEEEccccccCCCCCc--c----ccccchhccceeccCCHHHHHHH
Q 012426 220 DFFEKPAFLTVSGQLNA-ETYAT------A-LSNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 220 ~~f~~~~yL~~Spql~l-qll~~------g-~~rVfeI~~~FR~E~~~t~--r----Hl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
.+.+..+||..-.+-.. .+... . --|+|++|+|||+|.+... + -..||+|+|.+. |..-++..+.
T Consensus 220 ~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~ 298 (425)
T 2dq3_A 220 KCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDE 298 (425)
T ss_dssp BCTTTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHH
T ss_pred EecCCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHH
Confidence 01134566765444433 33322 1 2489999999999985211 1 234999999976 4443444444
Q ss_pred HHHHH
Q 012426 286 ATAYL 290 (464)
Q Consensus 286 ~e~li 290 (464)
.++++
T Consensus 299 ~~e~i 303 (425)
T 2dq3_A 299 LEKLV 303 (425)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 28
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.09 E-value=2.4e-06 Score=87.91 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=66.0
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---C--CC-----CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+++..|.+.+|+.|.+.||.||.||+|.+... . +. .++|.+++.
T Consensus 12 ~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~--------------------- 70 (420)
T 1qe0_A 12 LPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK--------------------- 70 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHH---------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcC---------------------
Confidence 3456789999999999999999999999999998431 1 11 244544211
Q ss_pred CccccccccCcccccccchhHHH-HHHhh-------c-cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYAT-------A-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~-------g-~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
-++.++|+.-..... ++++. . --|+|++|+|||+|... .-+.-||+|.|+|.-..+
T Consensus 71 --------~g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~-~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 71 --------GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQ-KGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp --------HHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred --------CCCEEEeCCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCCCc-CCCcccEEEeeEEEECCC
Confidence 123444543222222 33321 1 24899999999999764 456779999999997765
No 29
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.06 E-value=1.8e-05 Score=79.48 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=66.6
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC----------CCCCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~----------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+++..|...+|+.|...||.||.||++..... ....++|...+..
T Consensus 32 lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~-------------------- 91 (344)
T 1z7m_A 32 TLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE-------------------- 91 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT--------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCC--------------------
Confidence 4456788999999999999999999999999988421 1233555543211
Q ss_pred CccccccccCcccccccchhHHH---HHHhhc----cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA---ETYATA----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l---qll~~g----~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+.|+ |++=- ++++.. --|.|+||+|||+|... .-+.-||+|+++|.-..+
T Consensus 92 ---------g~~l~LR--pd~T~~~aR~~~~~~~~~P~rl~y~g~vfR~e~p~-~gR~REF~Q~g~ei~g~~ 151 (344)
T 1z7m_A 92 ---------GQSITLR--YDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRH-KGRSTENYQIGIELFGES 151 (344)
T ss_dssp ---------CCEEEEC--CCSHHHHHHHHHTCCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred ---------CCEEecC--CCCcHHHHHHHHhcCCCCCeEEEEECcEEccCCCC-CCCcceeEEEEEEEEcCC
Confidence 2222232 22222 444332 25899999999999774 457789999999997765
No 30
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.01 E-value=8.9e-06 Score=88.39 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=79.3
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+|+.|.+.||.||.||+|....- + | ..++|.+++.
T Consensus 266 ~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~---------------------- 323 (645)
T 1nyr_A 266 WLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQL---------------------- 323 (645)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEE----------------------
T ss_pred ECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEec----------------------
Confidence 34567899999999999999999999999999998541 1 1 2244433211
Q ss_pred ccccccccC-cccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCccc----cccchhccceeccCCHHH
Q 012426 215 IDWSQDFFE-KPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKD 281 (464)
Q Consensus 215 ~~~~~~~f~-~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~~~d 281 (464)
-+ +.++|+.-..-.. ++++.. + -|+|+||+|||+|.+. .+| .-||||.|+|. |.+-+.
T Consensus 324 -------~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~-~~~GL~R~ReF~Q~d~~~-f~~~~~ 394 (645)
T 1nyr_A 324 -------DETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASG-AVSGLQRVRGMTLNDSHI-FVRPDQ 394 (645)
T ss_dssp -------TTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTT-TCBTTTBCSEEEEEEEEE-EECGGG
T ss_pred -------CCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCc-cccCcceeeeEEEccEEE-EcCHHH
Confidence 13 4455654443333 544432 1 3899999999999983 443 36999999998 666555
Q ss_pred HHHHHHHHHH
Q 012426 282 DMACATAYLQ 291 (464)
Q Consensus 282 lm~~~e~li~ 291 (464)
+.+...+++.
T Consensus 395 ~~d~~~e~i~ 404 (645)
T 1nyr_A 395 IKEEFKRVVN 404 (645)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554455443
No 31
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.98 E-value=1.8e-05 Score=84.74 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=79.3
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++.+|.+.+|+.|.+.||.||.||+|.+..- .| ..++|.+++.
T Consensus 42 ~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~---------------------- 99 (572)
T 2j3l_A 42 YLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDR---------------------- 99 (572)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECT----------------------
T ss_pred eCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecC----------------------
Confidence 45667899999999999999999999999999998641 01 2345554321
Q ss_pred ccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCccc----cccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~~~dl 282 (464)
-++.++|+.-.+-.. +++.. .+ -|+|+||+|||+|.. + +| .-||+|.|+|.-..+-.+.
T Consensus 100 -------~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~ 170 (572)
T 2j3l_A 100 -------NDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASL 170 (572)
T ss_dssp -------TCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHH
T ss_pred -------CCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHH
Confidence 134556644333222 33222 12 389999999999987 2 33 3699999999977766666
Q ss_pred HHHHHHHH
Q 012426 283 MACATAYL 290 (464)
Q Consensus 283 m~~~e~li 290 (464)
...++.++
T Consensus 171 ~~e~~~~~ 178 (572)
T 2j3l_A 171 DQSYRDYE 178 (572)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555433
No 32
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.97 E-value=2.1e-05 Score=81.36 Aligned_cols=105 Identities=13% Similarity=0.163 Sum_probs=70.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--C--C---CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G---AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--e--g---~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
...-.+++..|.+.+|+.|...||.||.||++.+... . | ..++|.+++.+
T Consensus 16 lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~----------------------- 72 (434)
T 1wu7_A 16 YPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKG----------------------- 72 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTT-----------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCC-----------------------
Confidence 4456789999999999999999999999999998531 1 1 23456553211
Q ss_pred ccccccCcccccccchhHHH-HHHhhc----c-CceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 217 WSQDFFEKPAFLTVSGQLNA-ETYATA----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l-qll~~g----~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-|+.=..... ++++.. + -|.|+|+++||+|... .-+.-||+|.++|.-..+
T Consensus 73 ------g~~l~LrPd~t~~~aR~~~~~~~~~lP~rl~~~g~vfR~erp~-~gR~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 73 ------GREVTLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQ-AGRYREHYQFNADIFGSD 133 (434)
T ss_dssp ------SCEEEECSCSHHHHHHHHTTCTTCCSSEEEEECCEEECCCCSC-SSCCSEEEEEEEEEESCC
T ss_pred ------CCEEEeCCCChHHHHHHHHhcCCCCCCeEEEEEcCeecCCCCC-CCCccceEEeeEEEEcCC
Confidence 22323322111111 333322 1 4899999999999764 335679999999997765
No 33
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=97.94 E-value=3.5e-05 Score=80.63 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=81.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++..|.+.+|+.|.+.||.||.||+|.+.. .+ | +.++|.+++...
T Consensus 39 ~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~------------------- 99 (477)
T 1hc7_A 39 VRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGG------------------- 99 (477)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESS-------------------
T ss_pred ECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCC-------------------
Confidence 3456788999999999999999999999999999865 21 1 234555543210
Q ss_pred CccccccccCcccccccchhH-----HHHHHhh--cc-CceEEEccccccCCCCCc-cccccchhccceeccCCHHHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQL-----NAETYAT--AL-SNVYTFGPTFRAENSNTS-RHLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql-----~lqll~~--g~-~rVfeI~~~FR~E~~~t~-rHl~EFtmlE~e~a~~~~~dlm~ 284 (464)
+-.+.+++|+.-.+- |.+-+.. .+ -|+|+||+|||+|..... --.-||+|.|++..+.+..+...
T Consensus 100 ------~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~ 173 (477)
T 1hc7_A 100 ------EELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEE 173 (477)
T ss_dssp ------SEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHH
T ss_pred ------ccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHH
Confidence 001345566654442 3322211 22 489999999999954212 12349999999999998777766
Q ss_pred HHHHH
Q 012426 285 CATAY 289 (464)
Q Consensus 285 ~~e~l 289 (464)
.+..+
T Consensus 174 E~~~~ 178 (477)
T 1hc7_A 174 EVRRM 178 (477)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 34
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.94 E-value=1.4e-05 Score=83.30 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=80.3
Q ss_pred cchhhhhHHHHHHHHHHHHh-hhCCcEEEeCceEeecCC-C--CC-----CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFF-QENGFIWISSPIITASDC-E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff-~~~gF~EV~TP~L~~~~~-e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++..|.+.+|+.+ .+.||.||.||+|..... + |. .++|.+++.+
T Consensus 59 ~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~-------------------- 118 (460)
T 3uh0_A 59 FLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTD-------------------- 118 (460)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC----------------------
T ss_pred ECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCC--------------------
Confidence 44567899999999999999 999999999999988431 1 22 2344332110
Q ss_pred CccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCC---CccccccchhccceeccCCHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~---t~rHl~EFtmlE~e~a~~~~~dl 282 (464)
--+..++|+.-.+-.. .+.... + -|+|++|+|||+|... +-.=.-||+|.|++. |.+-++.
T Consensus 119 -------~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~ 190 (460)
T 3uh0_A 119 -------EEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQV 190 (460)
T ss_dssp -----------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGH
T ss_pred -------CCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHH
Confidence 0134566755444433 444332 1 3799999999999873 211234999999996 6666666
Q ss_pred HHHHHHHHHHHHH
Q 012426 283 MACATAYLQYVVR 295 (464)
Q Consensus 283 m~~~e~li~~i~~ 295 (464)
.+.+++++..+..
T Consensus 191 ~~e~~~~i~~~~~ 203 (460)
T 3uh0_A 191 KSEIFNSLKLIDI 203 (460)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666644433
No 35
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.89 E-value=2.4e-05 Score=80.41 Aligned_cols=103 Identities=21% Similarity=0.359 Sum_probs=69.7
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---C-CC------CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+++..|.+.+|+.|.+.||.||.||++.+... . |. .++|.+++.+
T Consensus 13 lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~-------------------- 72 (421)
T 1h4v_B 13 FGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRG-------------------- 72 (421)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCC--------------------
Confidence 3445788999999999999999999999999998531 1 11 2456553211
Q ss_pred CccccccccCcccccccchhHHH---HHHh-hcc------CceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA---ETYA-TAL------SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l---qll~-~g~------~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-|+ |++-- ++++ ... -|.|+|+++||+|... .-+.-||+|.++|.-..+
T Consensus 73 ---------g~~l~Lr--pd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~-~gR~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 73 ---------GRSLTLR--PEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSE 135 (421)
T ss_pred ---------CCEEeeC--CcchHHHHHHHHhccccccCCCeEEEEecCeecCCCCC-CCCcccEEEccEEEECCC
Confidence 2222232 22222 3333 212 4899999999999764 335679999999987654
No 36
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.89 E-value=2.8e-05 Score=80.07 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=71.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---C-CC------CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+++..|.+.+|+.|...||.||.||++.+... . |. .++|.+++.+
T Consensus 14 lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~-------------------- 73 (423)
T 1htt_A 14 LPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRN-------------------- 73 (423)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTT--------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCC--------------------
Confidence 3456789999999999999999999999999998531 1 22 2577664321
Q ss_pred CccccccccCcccccccchhHHH---HHHh-hc-----cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA---ETYA-TA-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l---qll~-~g-----~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-|+ |++-- ++++ .. --|.|+|+++||+|... .-+.-||+|.++|.-..+
T Consensus 74 ---------g~~l~Lr--pd~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~-~gR~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 74 ---------GDSLTLR--PEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQ-KGRYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp ---------SCEEEEC--SCSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESCC
T ss_pred ---------CCEEEeC--CCchHHHHHHHHhcccccCCCeEEEEEcCEecCCCCC-CCccceeEEeeEEEECCC
Confidence 2222232 22222 3333 21 24899999999999764 446679999999997765
No 37
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.89 E-value=3.4e-05 Score=80.39 Aligned_cols=123 Identities=16% Similarity=0.120 Sum_probs=82.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-C---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-C---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++..|.+.+|+.|.+.||.||.||+|.+.. . .| ..++|.+++...
T Consensus 33 ~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~------------------- 93 (459)
T 1nj8_A 33 YLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGK------------------- 93 (459)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSS-------------------
T ss_pred ECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCc-------------------
Confidence 4556788999999999999999999999999999843 1 12 234565543210
Q ss_pred CccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCcc--ccccch-hccceeccCCHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR--HLAEFW-MIEPELAFADLKDD 282 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~r--Hl~EFt-mlE~e~a~~~~~dl 282 (464)
+-.+.+++|+.-.+-.. ++++.. + -|+|+||+|||+|..+..- -.-||+ |.|++..+.+-.+.
T Consensus 94 ------~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a 167 (459)
T 1nj8_A 94 ------TQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEA 167 (459)
T ss_dssp ------SEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHH
T ss_pred ------ccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHH
Confidence 00134566665444443 544321 2 3899999999999872111 234999 99999988887666
Q ss_pred HHHHHHHH
Q 012426 283 MACATAYL 290 (464)
Q Consensus 283 m~~~e~li 290 (464)
....++++
T Consensus 168 ~~e~~~~i 175 (459)
T 1nj8_A 168 ENQVKEAI 175 (459)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65544444
No 38
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.87 E-value=2.8e-05 Score=78.87 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=65.6
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------CCC-CCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA-GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------eg~-~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
...-.+++..|...+|+.|...||.||.||++..... .-. .++|.+.+.+
T Consensus 33 lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~----------------------- 89 (373)
T 3rac_A 33 YPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGG----------------------- 89 (373)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCS-----------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCC-----------------------
Confidence 4455788999999999999999999999999987531 112 3455442211
Q ss_pred ccccccCcccccccchhHHH---HHHhh------ccCceEEEccccccCCC------CCccccccchhccceeccCC
Q 012426 217 WSQDFFEKPAFLTVSGQLNA---ETYAT------ALSNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l---qll~~------g~~rVfeI~~~FR~E~~------~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-|+ |++=- ++++. .--|.|+||+|||+|.. . .-+.-||+|+++|.-..+
T Consensus 90 ------g~~l~LR--pd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~-~gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 90 ------GDAVALR--PEMTPSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWA-SGKAAESTQVGIERIGEE 157 (373)
T ss_dssp ------SSCEEEC--SSSHHHHHHHHHHHHHTTCCCCEEEEEEEEEECC-------------CEEEEEEEEEECSSC
T ss_pred ------CCEEEEC--CcCHHHHHHHHHhccccCCCCeEEEEEcceEccCCCccccccc-CCccceeEEeeeEEECCC
Confidence 2222222 22211 33322 23689999999999976 3 345779999999986654
No 39
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.84 E-value=3.7e-05 Score=80.94 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=83.4
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCC--------CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEG--------AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg--------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++..|.+.+|+.|.+ ||.||.||+|.+.. ..+ ..++|.+++...
T Consensus 66 ~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~------------------- 125 (501)
T 1nj1_A 66 WMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGL------------------- 125 (501)
T ss_dssp ECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETT-------------------
T ss_pred ECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCC-------------------
Confidence 3456788999999999999999 99999999999854 221 245666543110
Q ss_pred CccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCcc--ccccch-hccceeccCCHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSR--HLAEFW-MIEPELAFADLKDD 282 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~r--Hl~EFt-mlE~e~a~~~~~dl 282 (464)
+-.+.+++|+.-.+-.. ++++. .+ -|+|++|+|||+|..++.= =.-||+ |.|++..+.+-++.
T Consensus 126 ------~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a 199 (501)
T 1nj1_A 126 ------SKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEA 199 (501)
T ss_dssp ------EEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHH
T ss_pred ------cccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHH
Confidence 00124556765554444 44332 12 3899999999999863211 224999 99999989887777
Q ss_pred HHHHHHHHH
Q 012426 283 MACATAYLQ 291 (464)
Q Consensus 283 m~~~e~li~ 291 (464)
...+++++.
T Consensus 200 ~~e~~~~l~ 208 (501)
T 1nj1_A 200 EEQVERAVE 208 (501)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655553
No 40
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.81 E-value=4e-05 Score=80.00 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=73.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-----CCCCCC-CceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-----CEGAGE-QFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-----~eg~~~-~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (464)
...-.+.+..+...+|+.|...||.||.||++.... ++...+ +|.+.+..+.-.+.+ . ..
T Consensus 22 lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~-----~---------~~ 87 (465)
T 3net_A 22 LPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAE-----K---------DK 87 (465)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccc-----c---------cc
Confidence 445678899999999999999999999999995421 233345 777654310000000 0 00
Q ss_pred cccccCcccccccchhHHH-HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC--HH----HHHH
Q 012426 218 SQDFFEKPAFLTVSGQLNA-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LK----DDMA 284 (464)
Q Consensus 218 ~~~~f~~~~yL~~Spql~l-qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~--~~----dlm~ 284 (464)
+.++-++.+-|+.=.-... ++++.. --|.|++|||||.|... .-+.-||+|+++|.-..+ .. +++.
T Consensus 88 ~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~ 166 (465)
T 3net_A 88 SGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGREKLSLLYDAQMPA 166 (465)
T ss_dssp ------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHH
T ss_pred ccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCC-CCCcceeEEeeEEEECCCCccchhhHHHHH
Confidence 0001123333331111111 333321 23999999999999874 456679999999987653 22 3555
Q ss_pred HHHHHHHHH
Q 012426 285 CATAYLQYV 293 (464)
Q Consensus 285 ~~e~li~~i 293 (464)
++-++++.+
T Consensus 167 l~~~~l~~l 175 (465)
T 3net_A 167 IITEIFEAV 175 (465)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555555443
No 41
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.80 E-value=4e-05 Score=80.09 Aligned_cols=107 Identities=14% Similarity=0.204 Sum_probs=69.6
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---C-CC------CCCceeeecCCCcccccCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKD 212 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~ 212 (464)
....-.+++..|...+|+.|.+.||.||.||+|..... . |. .++|.+.+..
T Consensus 41 ~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~------------------- 101 (467)
T 4e51_A 41 ILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDAL------------------- 101 (467)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTT-------------------
T ss_pred eCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCC-------------------
Confidence 34556789999999999999999999999999988532 1 21 2466543211
Q ss_pred CCccccccccCcccccccchhHHH-HHHhh-c-----cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 213 GLIDWSQDFFEKPAFLTVSGQLNA-ETYAT-A-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 213 ~~~~~~~~~f~~~~yL~~Spql~l-qll~~-g-----~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
-++.+.|+.-..... ++++. . --|.|++|+|||+|... .-+.-||+|+++|.-..+
T Consensus 102 ---------~g~~l~LRPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~-~gR~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 102 ---------NGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQ-RGRYRQFHQVGVEALGFA 164 (467)
T ss_dssp ---------TCCEEEECSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETCC
T ss_pred ---------CCCEEEeCcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCC-CCCcCceEEEEEEEEeCC
Confidence 022333432222222 43332 1 24899999999999875 345679999999986553
No 42
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.79 E-value=8.3e-05 Score=76.07 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=68.2
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (464)
...-.+++..|...+|+.|...||.||.||++..... ....++|.+.+.+
T Consensus 20 lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~------------------------ 75 (400)
T 3od1_A 20 LPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQ------------------------ 75 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTT------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCC------------------------
Confidence 4456788999999999999999999999999976542 1123455443211
Q ss_pred cccccCcccccccchhHHH---HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 218 SQDFFEKPAFLTVSGQLNA---ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 218 ~~~~f~~~~yL~~Spql~l---qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-|+ |++=- ++++.. --|.|++|+|||.|... .-+.-||+|+++|.-..+
T Consensus 76 -----g~~l~LR--pd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 76 -----GNTLVLR--PDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp -----SCEEEEC--SCSHHHHHHHHHHHCSSSCSCEEEEEEEEEECCCC----CCCSEEEEEEEEEESCC
T ss_pred -----CCEEEEC--CCCHHHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCC-CCCCCccEEeEEEEECCC
Confidence 2222222 32221 333332 24899999999999874 446779999999987654
No 43
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=97.74 E-value=8.8e-05 Score=77.18 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=67.5
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C-C-C----CCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E-G-A----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e-g-~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
...-.+++..|...+|+.|...||.||.||++..... . + + .++|.+.+.+
T Consensus 39 lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~----------------------- 95 (456)
T 3lc0_A 39 PPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKG----------------------- 95 (456)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSS-----------------------
T ss_pred CHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCC-----------------------
Confidence 4455788999999999999999999999999998642 1 1 1 2355543211
Q ss_pred ccccccCcccccccchhHHH---HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 217 WSQDFFEKPAFLTVSGQLNA---ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l---qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-| -|++=- ++++.. --|.|+||+|||.|... .-+.-||+|+++|.-..+
T Consensus 96 ------g~~l~L--Rpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 96 ------GHRVAL--RPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVGVK 157 (456)
T ss_dssp ------SCEEEE--CSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC------CCEEEEEEEEEESCC
T ss_pred ------CCEEec--CCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCC-CCCccceEEEEEEEEcCC
Confidence 222222 233222 433332 24899999999999874 446789999999987653
No 44
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.73 E-value=7.7e-05 Score=76.77 Aligned_cols=123 Identities=19% Similarity=0.250 Sum_probs=77.6
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (464)
......+++.+|.+.+++.+.+.||.||.||+|..... . |...-|.- .. +
T Consensus 161 ~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~-em------------------------y-- 213 (421)
T 1ses_A 161 LKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRD-QV------------------------W-- 213 (421)
T ss_dssp EETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGG-GS------------------------C--
T ss_pred ECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCch-hc------------------------E--
Confidence 34567889999999999999999999999999998531 1 22222210 00 0
Q ss_pred cccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCc--c----ccccchhccceeccCC-HHHHHH
Q 012426 220 DFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFAD-LKDDMA 284 (464)
Q Consensus 220 ~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~--r----Hl~EFtmlE~e~a~~~-~~dlm~ 284 (464)
.+-+..+||..-.+-.+ .++.. .+ -|+|++|+|||+|.+... + -.-||+|+|++..... .++..+
T Consensus 214 ~~~d~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~ 293 (421)
T 1ses_A 214 AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDR 293 (421)
T ss_dssp BBTTSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHH
T ss_pred EEcCCeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHH
Confidence 00124556766555544 33322 12 389999999999963111 1 2359999999875444 466666
Q ss_pred HHHHHHHH
Q 012426 285 CATAYLQY 292 (464)
Q Consensus 285 ~~e~li~~ 292 (464)
..++++..
T Consensus 294 ~~~e~~~~ 301 (421)
T 1ses_A 294 AFQELLEN 301 (421)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 45
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.73 E-value=0.00015 Score=75.99 Aligned_cols=121 Identities=15% Similarity=0.114 Sum_probs=81.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CC-CCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AG-EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~-~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
.....++..+|.+.+++.+.+.||.||.||.|..... + | .. ++|.++..
T Consensus 215 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~---------------------- 272 (501)
T 1wle_A 215 RGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPS---------------------- 272 (501)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTT----------------------
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecC----------------------
Confidence 4556899999999999999999999999999998542 1 1 12 44543210
Q ss_pred ccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCC---C--CccccccchhccceeccCCH-H
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS---N--TSRHLAEFWMIEPELAFADL-K 280 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~---~--t~rHl~EFtmlE~e~a~~~~-~ 280 (464)
-+.++||.-..+..+ .+...- + =|+|++++|||+|.. + +--=.-||+|.|.+.--.+. +
T Consensus 273 -------~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e 345 (501)
T 1wle_A 273 -------RFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLE 345 (501)
T ss_dssp -------TSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHH
T ss_pred -------CCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHH
Confidence 024567776666555 343321 2 489999999999965 1 11112489999999855443 6
Q ss_pred HHHHHHHHHHHHH
Q 012426 281 DDMACATAYLQYV 293 (464)
Q Consensus 281 dlm~~~e~li~~i 293 (464)
+..+..++++...
T Consensus 346 ~s~~~~e~~l~~~ 358 (501)
T 1wle_A 346 QSSELLEEFLSLQ 358 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777543
No 46
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.72 E-value=3.4e-05 Score=80.25 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=77.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.....+++.++++.+++.+.++||.||.||.|.... .++.+ ++|.++..
T Consensus 204 ~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~----------------------- 260 (484)
T 3lss_A 204 KGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD----------------------- 260 (484)
T ss_dssp EHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS-----------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecC-----------------------
Confidence 355689999999999999999999999999999854 23222 44544210
Q ss_pred cccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc------cccccchhccceeccCCHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~------rHl~EFtmlE~e~a~~~~~d 281 (464)
+..+||....+..+ .+.... + =|+|++++|||+|..... --.-||+|.|.+. |..-++
T Consensus 261 -------~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~ 332 (484)
T 3lss_A 261 -------GDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQ 332 (484)
T ss_dssp -------SSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSST
T ss_pred -------CcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcch
Confidence 34567877766666 333221 1 379999999999973111 1223999999985 543333
Q ss_pred --HHHHHHHHHH
Q 012426 282 --DMACATAYLQ 291 (464)
Q Consensus 282 --lm~~~e~li~ 291 (464)
..+..++++.
T Consensus 333 ~~s~~e~e~~~~ 344 (484)
T 3lss_A 333 EESWRHLEDMIT 344 (484)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 5555555553
No 47
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.69 E-value=4.8e-05 Score=79.03 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=78.5
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC--CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE--GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e--g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (464)
......+++..|.+.+++.+.+.||.||.||+|.... .+ |...-|.- .. +
T Consensus 188 ~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~-em------------------------y-- 240 (455)
T 2dq0_A 188 LLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFED-VI------------------------Y-- 240 (455)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHH-TC------------------------C--
T ss_pred ECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChH-hh------------------------C--
Confidence 3456788899999999999999999999999999854 22 22222210 00 0
Q ss_pred cccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc------cccccchhccceeccCCHHHHHHH
Q 012426 220 DFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 220 ~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~------rHl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
.+-+..+||....+..+ .+.... + -|+|++|+|||+|.+... .-.-||+|.|++ .|.+-++..+.
T Consensus 241 ~~~d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~ 319 (455)
T 2dq0_A 241 KVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEW 319 (455)
T ss_dssp BBTTSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHH
T ss_pred eecCCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHH
Confidence 01134567776665554 433321 2 389999999999986211 023499999998 46655666666
Q ss_pred HHHHHHH
Q 012426 286 ATAYLQY 292 (464)
Q Consensus 286 ~e~li~~ 292 (464)
.++++..
T Consensus 320 ~~e~l~~ 326 (455)
T 2dq0_A 320 HEKIIRN 326 (455)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 48
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.68 E-value=8.1e-05 Score=78.36 Aligned_cols=125 Identities=17% Similarity=0.132 Sum_probs=86.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++..|.+.+|+.|.+.||.||.||+|.+.. .+ | ..++|.+++...
T Consensus 50 ~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~------------------- 110 (518)
T 3ial_A 50 FRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGL------------------- 110 (518)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETT-------------------
T ss_pred ECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCC-------------------
Confidence 3566789999999999999999999999999998854 21 1 235666543210
Q ss_pred CccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCc--cccccchhccceeccCCHHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~~~~dlm 283 (464)
.=.+.+++|+.-.+-.. .++.. .+ -|+|++++|||+|...+. .-.-||+|.|.+...++.++..
T Consensus 111 ------~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~ 184 (518)
T 3ial_A 111 ------QPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAV 184 (518)
T ss_dssp ------EEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHH
T ss_pred ------cccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHH
Confidence 00134566765554433 44332 22 389999999999943221 1335999999999778988888
Q ss_pred HHHHHHHHH
Q 012426 284 ACATAYLQY 292 (464)
Q Consensus 284 ~~~e~li~~ 292 (464)
+.++.++..
T Consensus 185 ~e~~~~l~~ 193 (518)
T 3ial_A 185 SQLSDYWKV 193 (518)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877743
No 49
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.67 E-value=5e-05 Score=78.97 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=78.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCC-------CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEG-------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg-------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.....+++.++++.+++.+.++||.||.||.|.... .++ ..++|.++..
T Consensus 181 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~----------------------- 237 (485)
T 3qne_A 181 RNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG----------------------- 237 (485)
T ss_dssp CTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET-----------------------
T ss_pred ecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC-----------------------
Confidence 356789999999999999999999999999999854 222 1345554310
Q ss_pred cccccccCcccccccchhHHH-HHHhhc-c--------CceEEEccccccCCCC------CccccccchhccceeccCCH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA-L--------SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADL 279 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g-~--------~rVfeI~~~FR~E~~~------t~rHl~EFtmlE~e~a~~~~ 279 (464)
+.+.||.-..+.-+ -++..- + =|+|++++|||+|... +---.-||+|.|.+. |..-
T Consensus 238 -------~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~p 309 (485)
T 3qne_A 238 -------EDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEP 309 (485)
T ss_dssp -------TEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECG
T ss_pred -------CCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCH
Confidence 23456765555555 233221 1 2699999999999742 111233999999996 5655
Q ss_pred HHHHHHHHHHHHH
Q 012426 280 KDDMACATAYLQY 292 (464)
Q Consensus 280 ~dlm~~~e~li~~ 292 (464)
++..+..++|+..
T Consensus 310 e~s~~e~e~ml~~ 322 (485)
T 3qne_A 310 EKSWEEFDRMIGC 322 (485)
T ss_dssp GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666543
No 50
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.67 E-value=4.8e-05 Score=82.53 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=78.1
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+|+.+.+.||.||.||+|.+..- + | ..++|. ++.
T Consensus 266 ~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~-~d~---------------------- 322 (642)
T 1qf6_A 266 WHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSS---------------------- 322 (642)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-EEE----------------------
T ss_pred ECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee-eec----------------------
Confidence 45667899999999999999999999999999998641 1 1 123443 211
Q ss_pred ccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCccc----cccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~~~dl 282 (464)
-++.++|+.-.+-.. ++.... + -|+|+||+|||+|.+ +.+| .-||+|.|++. |.+-+++
T Consensus 323 -------~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~~~~~ 393 (642)
T 1qf6_A 323 -------ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQI 393 (642)
T ss_dssp -------TTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGH
T ss_pred -------CCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcCHHHH
Confidence 023455654443333 444322 2 389999999999987 2332 45999999998 6665555
Q ss_pred HHHHHHHHH
Q 012426 283 MACATAYLQ 291 (464)
Q Consensus 283 m~~~e~li~ 291 (464)
....++++.
T Consensus 394 ~~e~~~~i~ 402 (642)
T 1qf6_A 394 RDEVNGCIR 402 (642)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 51
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.63 E-value=0.00012 Score=77.20 Aligned_cols=125 Identities=16% Similarity=0.100 Sum_probs=82.5
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC---CCC-----CCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE---GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e---g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++..|.+.+++.+.+.||.||.||+|.+.. .+ |.. ++|.+++...
T Consensus 56 ~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~------------------- 116 (519)
T 4hvc_A 56 LRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGK------------------- 116 (519)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETT-------------------
T ss_pred ECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCC-------------------
Confidence 3456688999999999999999999999999998753 12 222 2343432110
Q ss_pred CccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCcc--ccccchhccceeccCCHHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSR--HLAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~r--Hl~EFtmlE~e~a~~~~~dlm 283 (464)
.+ .+.+++|+.-.+-.. .+... .+ -|+|++|+|||+|...+.= =.-||+|.|.+..|++.++..
T Consensus 117 -----~~-l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~ 190 (519)
T 4hvc_A 117 -----TE-LAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAA 190 (519)
T ss_dssp -----EE-EEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHH
T ss_pred -----cc-cccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHH
Confidence 00 023456654443333 43332 22 3899999999999542210 124999999999999988888
Q ss_pred HHHHHHHHH
Q 012426 284 ACATAYLQY 292 (464)
Q Consensus 284 ~~~e~li~~ 292 (464)
+.++.++..
T Consensus 191 ~E~~~~l~~ 199 (519)
T 4hvc_A 191 EEVLQILDL 199 (519)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776643
No 52
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.58 E-value=0.0001 Score=77.09 Aligned_cols=117 Identities=16% Similarity=0.176 Sum_probs=74.1
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---CCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+|+.|.+.||.||.||+|.+... +|+ .++|.+. .
T Consensus 44 ~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d-~---------------------- 100 (471)
T 3a32_A 44 FSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFD-I---------------------- 100 (471)
T ss_dssp BCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEE-E----------------------
T ss_pred ECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEe-c----------------------
Confidence 34556889999999999999999999999999998541 222 2344331 1
Q ss_pred ccccccccCcccccccchhHHH-HHHh-----h----cc-CceEEEccccccCCCC--Cc-cccccchhccceeccCCHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYA-----T----AL-SNVYTFGPTFRAENSN--TS-RHLAEFWMIEPELAFADLK 280 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~-----~----g~-~rVfeI~~~FR~E~~~--t~-rHl~EFtmlE~e~a~~~~~ 280 (464)
-+..++|+.-.+... ++.+ . .+ -|+|+||+|||+|... .. --.-||+|.|+|.-. +-+
T Consensus 101 -------~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~-~~~ 172 (471)
T 3a32_A 101 -------EGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIV-PGG 172 (471)
T ss_dssp -------TTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-EGG
T ss_pred -------CCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEc-ChH
Confidence 134455544333322 3221 1 23 4899999999999763 11 024599999999854 333
Q ss_pred HHHHHHHHHH
Q 012426 281 DDMACATAYL 290 (464)
Q Consensus 281 dlm~~~e~li 290 (464)
...+.+.+++
T Consensus 173 ~~~de~~e~i 182 (471)
T 3a32_A 173 RVIDVVYDVF 182 (471)
T ss_dssp GHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444434444
No 53
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=97.56 E-value=5.8e-05 Score=77.45 Aligned_cols=104 Identities=10% Similarity=0.140 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhhhC--------CcEEEeC-ceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 150 VRNALAYATHKFFQEN--------GFIWISS-PIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 150 ~rs~i~~~~r~ff~~~--------gF~EV~T-P~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
--+.+...+|++|... ||.|+.+ |.+.+... ....++...+| ++++ .+..
T Consensus 49 Pl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~-NFd~L~~p~dH------paR~--------------~~Dt 107 (415)
T 3cmq_A 49 PLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQ-NFDSLLIPADH------PSRK--------------KGDN 107 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHH-HTGGGTCCTTC------GGGC--------------GGGS
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHH-HHHHhCCCCCC------Cccc--------------ccce
Confidence 3466677888888776 9999999 77765322 12222211222 2221 0112
Q ss_pred -ccCcccccccchhHHH-HHHhhccCceEEEccccccCCCCCccccccchhccceec
Q 012426 221 -FFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELA 275 (464)
Q Consensus 221 -~f~~~~yL~~Spql~l-qll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a 275 (464)
|.+...-|+++.=-+. ++|..+..|+|++|.|||.+..| ..|.|+|+|+|.-..
T Consensus 108 fyi~~~~vLRThts~~~~~~l~~~~~k~~~~G~VyR~D~~d-a~h~n~fhQ~egv~l 163 (415)
T 3cmq_A 108 YYLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQID-SQHYPIFHQLEAVRL 163 (415)
T ss_dssp CBSSSSEEECSSGGGGHHHHHHTTCSEEEEEEEEECCCCCB-TTBCSEEEEEEEEEE
T ss_pred EEecCCeEEcCCCcHHHHHHHHHCCCCEEEeeeEEeccchh-hhhhHHhcCCCcEEE
Confidence 2344445644332233 66766778999999999999886 899999999996444
No 54
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.54 E-value=0.00031 Score=73.00 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=65.9
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC------CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
....-.+++..|.+.+|+.|...||.||.||++.... ++...++|...+.+
T Consensus 23 ~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~----------------------- 79 (464)
T 4g84_A 23 YSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQG----------------------- 79 (464)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCS-----------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCC-----------------------
Confidence 3556678999999999999999999999999997642 12223455443211
Q ss_pred ccccccCcccccccchhHH---HHHHhhc---cCceEEEccccccCCCCC-ccccccchhccceeccC
Q 012426 217 WSQDFFEKPAFLTVSGQLN---AETYATA---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAFA 277 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~---lqll~~g---~~rVfeI~~~FR~E~~~t-~rHl~EFtmlE~e~a~~ 277 (464)
|+.+-|+ |++= .|+++.. --|.|+||++||.|.... .-+.-||+|+++|.-..
T Consensus 80 ------g~~l~LR--Pd~T~~~aR~~~~~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 80 ------GELLSLR--YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp ------SCCEEEC--SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESC
T ss_pred ------CCEEEeC--CcCcHHHHHHHHhcCCCCceeEEEecceeccCCccccCccceeeecceeccCC
Confidence 2233333 3321 1433321 247899999999996521 23566999999998653
No 55
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.45 E-value=0.00025 Score=74.92 Aligned_cols=117 Identities=18% Similarity=0.285 Sum_probs=79.5
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--CC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.....+++.++++.+++.+.++||.||.||.|..... + |. .++|.++
T Consensus 271 ~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~------------------------- 325 (536)
T 3err_A 271 KGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA------------------------- 325 (536)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET-------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec-------------------------
Confidence 3557899999999999999999999999999998542 2 21 1233221
Q ss_pred cccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc------cccccchhccceeccCC--H
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFAD--L 279 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~------rHl~EFtmlE~e~a~~~--~ 279 (464)
+..+||....+..+ .+.... + -|+|++++|||+|.+.+. --.-||+|.|.+. |.. .
T Consensus 326 -------~~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~ 397 (536)
T 3err_A 326 -------ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASL 397 (536)
T ss_dssp -------TTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCH
T ss_pred -------CCCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCch
Confidence 24567766666555 333221 2 379999999999973111 2345999999995 543 3
Q ss_pred HHHHHHHHHHHHHH
Q 012426 280 KDDMACATAYLQYV 293 (464)
Q Consensus 280 ~dlm~~~e~li~~i 293 (464)
++..+..++++...
T Consensus 398 e~s~~~~e~~~~~~ 411 (536)
T 3err_A 398 EASDRAFQELLENA 411 (536)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47777777776543
No 56
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.44 E-value=0.0004 Score=73.35 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=65.5
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC------CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
....-.+++..|.+.+|+.|...||.||.||++.... ++....+|...+.+
T Consensus 76 ~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~----------------------- 132 (517)
T 4g85_A 76 YSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQG----------------------- 132 (517)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTT-----------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCC-----------------------
Confidence 4566789999999999999999999999999997642 12223345432211
Q ss_pred ccccccCcccccccchhHH---HHHHhhc---cCceEEEccccccCCCCC-ccccccchhccceeccC
Q 012426 217 WSQDFFEKPAFLTVSGQLN---AETYATA---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAFA 277 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~---lqll~~g---~~rVfeI~~~FR~E~~~t-~rHl~EFtmlE~e~a~~ 277 (464)
|+.+-|+ |++= .|+++.. --|.|+||++||.|.... .=+.-||+|+++|.-..
T Consensus 133 ------g~~l~LR--Pd~T~~~aR~~~~~~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 133 ------GELLSLR--YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp ------SCCEEEC--SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESC
T ss_pred ------CCEEEeC--CcCcHHHHHHHHhCCCCCceeEEEeceEeccCcccccCccceeeeeceeccCC
Confidence 2222232 3321 1433322 247899999999996521 12557999999998653
No 57
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.44 E-value=0.00011 Score=77.20 Aligned_cols=156 Identities=14% Similarity=0.096 Sum_probs=83.6
Q ss_pred cchhhhhHHHHHHHHHHH-HhhhCCcEEEeCceEeecCC-C--CC-----CCCceeeecCCCcccccCCCCCCCC-CCCC
Q 012426 143 TFGAVARVRNALAYATHK-FFQENGFIWISSPIITASDC-E--GA-----GEQFCVTTLIPSSREAAESPVDAIP-KTKD 212 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~-ff~~~gF~EV~TP~L~~~~~-e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~-~~~~ 212 (464)
....-.+++..|.+.+++ ++.+.||.||.||+|.+... + |. .++|.++....+..+...+-+.... ..+.
T Consensus 226 ~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~ 305 (522)
T 2cja_A 226 HGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEV 305 (522)
T ss_dssp ECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSC
T ss_pred ECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccc
Confidence 345668899999999996 68899999999999998431 1 11 2334332100000000000000000 0000
Q ss_pred CCccccccccCcccccccchhHHH-HHHhh------cc-CceEE-EccccccCCC--CCccccccchhccceeccCCHHH
Q 012426 213 GLIDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 213 ~~~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~a~~~~~d 281 (464)
+..+++..--+..+||+...+... .+... .+ -|+|+ +|+|||+|.. .+---.-||+|.|++. |.+-++
T Consensus 306 ~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~ 384 (522)
T 2cja_A 306 PTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEE 384 (522)
T ss_dssp CHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHH
T ss_pred cccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHH
Confidence 000000000134556665444332 22221 12 27999 9999999943 1112345999999998 778888
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012426 282 DMACATAYLQYVVRYILD 299 (464)
Q Consensus 282 lm~~~e~li~~i~~~~~~ 299 (464)
..+..++++......++.
T Consensus 385 s~ee~ee~i~~~~~~~l~ 402 (522)
T 2cja_A 385 VLKCAEELHDRYMHIFND 402 (522)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888444444443
No 58
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.40 E-value=0.00019 Score=75.34 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=42.7
Q ss_pred CceEEEccccccCCC-CCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|++|+|||++.. + ..|.+||+|++.-+++. |+.|+...++.+++.+
T Consensus 218 vrlFEiGrVFr~D~~~d-~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 218 LKLFSIDRCFRREQRED-RSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EEEEEEEEECCCCSSCS-SSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred eEEEEEeeEEecCCccc-CcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 379999999998765 4 56999999999999886 7999999999998865
No 59
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.35 E-value=0.00036 Score=73.16 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=75.1
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.....+++.+|++.+++.+.++||.||.||.|..... . | ..++|.++.... ..
T Consensus 197 ~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~---------------~~---- 257 (522)
T 3vbb_A 197 KGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGS---------------EK---- 257 (522)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC-------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCc---------------cc----
Confidence 4456899999999999999999999999999987432 1 1 234555432100 00
Q ss_pred cccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc------cccccchhccceeccCCHH-
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLK- 280 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~------rHl~EFtmlE~e~a~~~~~- 280 (464)
..+--+..+||....+..+ .+.... + =|+|++++|||+|.+... --.-||+|.|.+. |..-+
T Consensus 258 --~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~ 334 (522)
T 3vbb_A 258 --SDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHD 334 (522)
T ss_dssp --------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSST
T ss_pred --cccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCCh
Confidence 0000123567776655554 222211 1 379999999999975111 1224999999985 44322
Q ss_pred -HHHHHHHHHHH
Q 012426 281 -DDMACATAYLQ 291 (464)
Q Consensus 281 -dlm~~~e~li~ 291 (464)
+..+..++++.
T Consensus 335 e~s~~e~e~ml~ 346 (522)
T 3vbb_A 335 NKSWEMFEEMIT 346 (522)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 25555555553
No 60
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.28 E-value=0.00012 Score=77.58 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=42.8
Q ss_pred CceEEEccccccCCC-CCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|++|+|||++.. + .+|.+||+||+.-++.. |+.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lD-ath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 225 FKLFSIDRCFRREQKED-KSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEEEEEEEEECCCSCCC-SSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCcccc-ccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478999999998765 4 67999999999999885 7999999999998866
No 61
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.27 E-value=0.00013 Score=77.51 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=42.8
Q ss_pred CceEEEccccccCCC-CCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|++|+|||++.. + .+|.+||+||+.-++.. |+.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lD-ath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 225 FKLFSIDRCFRREQKED-KSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEEEEEEEEECCCSCCC-SSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCcccc-ccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478999999998765 4 67999999999999885 7999999999998866
No 62
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.25 E-value=3.5e-05 Score=81.85 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=42.8
Q ss_pred CceEEEccccccCCC-CCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|+||+|||++.. + .+|.+||+||+.-++.. |+.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lD-ath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 225 FKLFSIDRCFRREQKED-KSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEEEEEEEEECCCSCCC-SSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEeccEEecCcccc-ccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478999999998765 4 67999999999999885 7999999999998866
No 63
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.21 E-value=0.00016 Score=77.06 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=42.8
Q ss_pred CceEEEccccccCCC-CCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|++|+|||++.. + .+|.+||+||+.-++.. |+.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lD-ath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 225 FKLFSIDRCFRREQKED-KSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEEECCCSCCC-SSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEccCcccc-ccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478999999998765 4 67999999999999885 7999999999998866
No 64
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.16 E-value=0.0012 Score=69.57 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=32.2
Q ss_pred chhhhhHHHHHHHHHHHHhh--hCCcEEEeCceEeecC
Q 012426 144 FGAVARVRNALAYATHKFFQ--ENGFIWISSPIITASD 179 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~--~~gF~EV~TP~L~~~~ 179 (464)
...-.+++..|.+.+|+.|. +.||.||.||+|.+..
T Consensus 35 ~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 35 GPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred CccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 44568899999999999999 8999999999999865
No 65
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.02 E-value=0.00031 Score=73.77 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=42.6
Q ss_pred CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|+||+|||.+......|.+||+|+++.+.+. ++.|+...++.++..+
T Consensus 206 vrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 206 IKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred eeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3799999999987651267999999999999885 6999999999998765
No 66
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=96.94 E-value=0.0012 Score=65.45 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=85.3
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCC-------CCceeeecCCC-cccccCCCCCCCCCCCCCCc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAG-------EQFCVTTLIPS-SREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~-------~~F~vt~~~~~-~~~~~~~~~~~~~~~~~~~~ 215 (464)
...-+++..|.+.+++ ..+.||.||.||.|.... .++.+ .+|.+...... ..|.. .+. ....+ .
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~--ll~---~~~~~-~ 133 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINA--AVS---RFDAG-G 133 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHH--HHH---HHHTT-S
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhh--hhh---hhccc-c
Confidence 3456788888899999 888999999999999854 33322 34443211000 00000 000 00000 0
Q ss_pred cccccccCcccccccchhHHH-HHHhh-c-c----CceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT-A-L----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 288 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~-g-~----~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~ 288 (464)
++....-+..+||....+..+ .++.. | + -|+-.+++|||.|.+.+--.+-+|+|.|+-. |.+-++..+..++
T Consensus 134 ~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~ 212 (346)
T 3mf2_A 134 DWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRER 212 (346)
T ss_dssp CGGGGEEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHH
T ss_pred ccccccCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHH
Confidence 011111123567777776666 44442 2 1 3566799999999976666777999999865 5688898888888
Q ss_pred HHHHH
Q 012426 289 YLQYV 293 (464)
Q Consensus 289 li~~i 293 (464)
++..+
T Consensus 213 l~~~a 217 (346)
T 3mf2_A 213 WMVRA 217 (346)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
No 67
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=96.84 E-value=0.013 Score=50.12 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=66.7
Q ss_pred cceecccccCCCCCC-----CCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccch-hhhhcCCCCCC
Q 012426 10 KKLKIVDVKGGPNEG-----LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTG 83 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~-----~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~-~~~~~~~l~~g 83 (464)
..++|++|++....+ ....=..|++.|+|.++....+..-+.|.|+|| ..|.+....+...- ..... +..|
T Consensus 7 ~PvtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG-~~I~~~~W~~~~~~~~~~~~--~~~g 83 (132)
T 3kdf_D 7 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPE 83 (132)
T ss_dssp EECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEEC---------CC--CCTT
T ss_pred eeEEHHHHhhCccCCCcEEECCEEEEEEEEEEEEEEEEEcCCeEEEEEECCCC-CEEEEEEEccCCCccccccc--ccCC
Confidence 346788887653110 112235799999999999988877888999998 14999887543211 11344 9999
Q ss_pred cEEEEEEEEEeCCCCCceEEEEEeeEEEEec
Q 012426 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~el~~~~i~vls~ 114 (464)
+.|.|.|.++.-+ +...|.+..+..+..
T Consensus 84 ~yVrV~G~l~~f~---g~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 84 TYVKVAGHLRSFQ---NKKSLVAFKIMPLED 111 (132)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEECSS
T ss_pred CEEEEEEEEEeEC---CEEEEEEEEEEEcCC
Confidence 9999999998754 236788877766544
No 68
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.82 E-value=0.012 Score=52.19 Aligned_cols=79 Identities=15% Similarity=0.264 Sum_probs=62.3
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc-hhh-hhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 30 ~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
+.|+|.|.|.+++...+...+.|.|+||. .|.|++..+... -.. -.. +..|++|.|.|.+..-.. ..+|.++
T Consensus 48 ~~V~IvGiVv~~~~~~~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~--l~~G~~VrV~G~v~~fr~---~rqI~~~ 121 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYEGKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAIS--MSPGNVVCVFGKINSFRS---EVELIAQ 121 (159)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTT--CCTTCEEEEEEEEECSSS---SCEEEEE
T ss_pred EEEEEEEEEEEEEEeCCEEEEEEecCCCC-eEEEEEEccCCCCccccccc--CCCCCEEEEEEEEEeeCC---EEEEEEE
Confidence 67999999999999888888999999983 699998765421 111 224 899999999999976543 3699999
Q ss_pred eEEEEec
Q 012426 108 KIVLVGK 114 (464)
Q Consensus 108 ~i~vls~ 114 (464)
++.++..
T Consensus 122 ~i~~v~d 128 (159)
T 3kf6_A 122 SFEELRD 128 (159)
T ss_dssp EEEEECS
T ss_pred EEEECCC
Confidence 9988874
No 69
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=96.78 E-value=0.0016 Score=70.99 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=31.5
Q ss_pred cchhhhhHHHHHHHHHHHHhh-hCCcEEEeCceEeec
Q 012426 143 TFGAVARVRNALAYATHKFFQ-ENGFIWISSPIITAS 178 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~-~~gF~EV~TP~L~~~ 178 (464)
....-.+++..|.+.+|+.|. ..||.||.||+|++.
T Consensus 96 ~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 96 FGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp ECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred ECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 345668999999999999998 569999999999984
No 70
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.73 E-value=0.014 Score=50.27 Aligned_cols=99 Identities=11% Similarity=0.090 Sum_probs=67.9
Q ss_pred ccceecccccCCCCC-------CCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccch--hhhhcCC
Q 012426 9 RKKLKIVDVKGGPNE-------GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79 (464)
Q Consensus 9 ~~~~~i~~l~~~~~~-------~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~--~~~~~~~ 79 (464)
.+.++|++|++.... -....=..|++.|+|.+++......-+.|.|+||. |.+....+.... .....
T Consensus 9 l~PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG~--I~~~~W~~~~~~~~~~~~~-- 84 (136)
T 4gop_B 9 LRPVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTGQ--IEVRQWLDSSSDDSSKASE-- 84 (136)
T ss_dssp EEECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECSSEEEEEEECSSCE--EEEEEECC--------CCS--
T ss_pred EEeEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecCCeEEEEEECCCCC--EEEEEecccCCcccccccc--
Confidence 345778888764211 01123367999999999999887777889999984 999887543221 12345
Q ss_pred CCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEec
Q 012426 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~ 114 (464)
+..|+.|.|.|.+..-+ +...|.+..+..+..
T Consensus 85 ~~~g~yVrV~G~v~~f~---g~~qi~~~~ir~v~d 116 (136)
T 4gop_B 85 IRNNVYVRVLGTLKSFQ---NRRSISSGHMRPVID 116 (136)
T ss_dssp CCTTCEEEEEEEEEEET---TEEEEEESEEEECSS
T ss_pred cCCCCEEEEEEEEEEeC---CEEEEEEEEEEECCC
Confidence 99999999999997654 336778877765543
No 71
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=96.71 E-value=0.0029 Score=61.23 Aligned_cols=85 Identities=9% Similarity=0.018 Sum_probs=52.6
Q ss_pred HHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc--cchhHH
Q 012426 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT--VSGQLN 235 (464)
Q Consensus 158 ~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~--~Spql~ 235 (464)
+++.|...||.||.||++.....-.. +.| .+.. ++.+-|+ ..|.+.
T Consensus 12 ~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f--~d~~-----------------------------g~~l~LRpd~T~~~a 59 (275)
T 1usy_A 12 FYSKATKKGFSPFFVPALEKAEEPAG-NFF--LDRK-----------------------------GNLFSIREDFTKTVL 59 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECSSCCS-SCE--EETT-----------------------------SCEEEECCCHHHHHH
T ss_pred HHHHHHHCCCEEecCccccchhhhcc-ccc--CCCC-----------------------------CCEEEeCCcChHHHH
Confidence 34999999999999999998653221 244 1111 1111111 011222
Q ss_pred H-HHHh-h-ccCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 236 A-ETYA-T-ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 236 l-qll~-~-g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
. ++.- . .--|.|++|+|||.|.+. . -||+|+++|.-..+
T Consensus 60 ~~~~~~~~~~p~R~~y~g~vfR~e~~~-~---Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 60 NHRKRYSPDSQIKVWYADFVYRYSGSD-L---VAEYQLGLEKVPRN 101 (275)
T ss_dssp HHHTTCTTCCCEEEECCEEEEEEETTE-E---EEEEEEEEEEESCC
T ss_pred HHHhhcCCCCceEEEEeceEEecCCCC-C---CeeeEeCEEEecCC
Confidence 1 1111 1 225899999999999874 3 69999999986654
No 72
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.35 E-value=0.055 Score=44.35 Aligned_cols=87 Identities=13% Similarity=0.221 Sum_probs=65.1
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeec-------C---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCC
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~-------~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l 80 (464)
..+|++|.. +..|.|.|+|.++-. . +++.=+.|.|.+| .|.+++-.+... + . +
T Consensus 5 ~~~I~dL~~---------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG--~IrvtlW~~~a~---~-~--l 67 (105)
T 3dm3_A 5 TYNIGELSP---------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG--SIRVTLWDNLTD---I-D--V 67 (105)
T ss_dssp EECGGGCCS---------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE--EEEEEEEGGGGG---S-C--C
T ss_pred ceEHHHCCC---------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECcccc---c-c--c
Confidence 356666654 268999999987642 2 2355588999997 499987754321 1 4 9
Q ss_pred CCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCC
Q 012426 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~ 116 (464)
.+||+|.+.|.++.... +++||++.+...+.+|.
T Consensus 68 ~~Gdvv~i~g~vk~~~~--g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 68 GRGDYVRVRGYIREGYY--GGLECTANYVEILKKGE 101 (105)
T ss_dssp CTTCEEEEEEEEEECTT--SSEEEEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEEccC--CCEEEEeCCceEEEecc
Confidence 99999999999988754 35999999999999986
No 73
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.21 E-value=0.0092 Score=61.63 Aligned_cols=110 Identities=13% Similarity=-0.033 Sum_probs=61.1
Q ss_pred hhhhhHHHHHHHHHHHHh-hhCC-cEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 145 GAVARVRNALAYATHKFF-QENG-FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff-~~~g-F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
..-..+|+.|++..|.-| .++| +.||.||+...-...|+-+ .|
T Consensus 101 P~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d-----------------------------------~~ 145 (459)
T 3ikl_A 101 PLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDS-----------------------------------AF 145 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCS-----------------------------------CC
T ss_pred CcHHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchh-----------------------------------hh
Confidence 344688999998555544 4355 8889999943322222222 22
Q ss_pred Cccccccc-chhHHHHHH----hh---cc-CceEEEccccccCC--CCCcccc----ccchhccceeccCCHHHHHHHHH
Q 012426 223 EKPAFLTV-SGQLNAETY----AT---AL-SNVYTFGPTFRAEN--SNTSRHL----AEFWMIEPELAFADLKDDMACAT 287 (464)
Q Consensus 223 ~~~~yL~~-Spql~lqll----~~---g~-~rVfeI~~~FR~E~--~~t~rHl----~EFtmlE~e~a~~~~~dlm~~~e 287 (464)
. +||+. .-|-++... -. .+ =++.+||+|||+|. + +.+|- -||+|.|.+. |++-++..+..+
T Consensus 146 ~--~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~-~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~ 221 (459)
T 3ikl_A 146 R--GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLVW-FTPPRTSNQWLD 221 (459)
T ss_dssp T--TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC-----------CCCCEEEEEEEEE-EECGGGHHHHHH
T ss_pred c--ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccc-cCCCCcccccceeeeeEEE-EeChhHHHHHHH
Confidence 2 56664 333333211 11 12 26899999999995 3 34442 5999999984 666555555555
Q ss_pred HHHHHH
Q 012426 288 AYLQYV 293 (464)
Q Consensus 288 ~li~~i 293 (464)
.++..+
T Consensus 222 ~~~~~~ 227 (459)
T 3ikl_A 222 FWLRHR 227 (459)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 74
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.13 E-value=0.075 Score=42.82 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=56.1
Q ss_pred CCEEEEEEEEeeee---c----CC---CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCC
Q 012426 29 GLMIVVAGWVRTLR---A----QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (464)
Q Consensus 29 ~~~V~v~GwV~~iR---~----~g---~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~ 98 (464)
+..|.|.|+|.++- . .| ++.=+.|.|.|| .|.+++-.+... . . +.+||+|.|.|.+..-.
T Consensus 11 g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG--~I~~tlW~~~~~---~-~--i~~Gdvv~i~g~v~~~~-- 80 (97)
T 3e0e_A 11 NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG--SIRGTLWNELAD---F-E--VKKGDIAEVSGYVKQGY-- 80 (97)
T ss_dssp TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE--EEEEEEEGGGGG---C-C--CCTTCEEEEEEEEEEC---
T ss_pred CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECCccc---c-c--cCCCCEEEEEEEEEEcC--
Confidence 36899999998763 2 22 466688999997 499887654221 1 4 99999999999987654
Q ss_pred CceEEEEEeeEEEEecC
Q 012426 99 KQKVELKVNKIVLVGKS 115 (464)
Q Consensus 99 ~~~~el~~~~i~vls~~ 115 (464)
+.+||.+.+...+-+|
T Consensus 81 -~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 81 -SGLEISVDNIGIIEKS 96 (97)
T ss_dssp --CEEEEEEEEEEEECC
T ss_pred -CeEEEEECCCcEEEEC
Confidence 3599999998888776
No 75
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=95.98 E-value=0.0069 Score=62.80 Aligned_cols=140 Identities=10% Similarity=0.015 Sum_probs=74.1
Q ss_pred hhhhhHHHHHHHHHHHH-h-hhCCcEEEeCceEeecC-CCCC--CCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 012426 145 GAVARVRNALAYATHKF-F-QENGFIWISSPIITASD-CEGA--GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~f-f-~~~gF~EV~TP~L~~~~-~eg~--~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (464)
..-.+++..|.+.+++. + .+.|+.||.||+|.+.. .++. +..|...+... +. -.+.. + .+.-...-.
T Consensus 59 P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e-----~~-~~~g~-~-~eem~~~~~ 130 (454)
T 1g5h_A 59 PLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIRE-----IL-QDREP-S-KEQLVAFLE 130 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHH-----HH-CC----C-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHH-----Hh-hccCC-C-HHHHHHHHH
Confidence 44578999999988876 4 58999999999999865 2221 11110100000 00 00000 0 000000000
Q ss_pred cccCccccccc--chhHHH---HHHhh---cc-CceEEEccccc---cCCCCCccc----cccchhccceeccCCHHHHH
Q 012426 220 DFFEKPAFLTV--SGQLNA---ETYAT---AL-SNVYTFGPTFR---AENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 220 ~~f~~~~yL~~--Spql~l---qll~~---g~-~rVfeI~~~FR---~E~~~t~rH----l~EFtmlE~e~a~~~~~dlm 283 (464)
++++.++||+. +|-.+. +.+-. -+ =+++|||+||| ||-+ ++| .-||+|.|++. |++.++..
T Consensus 131 ~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s--~~~Gl~R~REF~q~E~~~-F~~pe~~~ 207 (454)
T 1g5h_A 131 NLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ--TPSSVTRVGEKTEASLVW-FTPTRTSS 207 (454)
T ss_dssp HHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHH
T ss_pred hhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc--CCCCccccCceehhheEE-EeCHhhHH
Confidence 12355677774 322222 22211 23 37999999999 6865 243 46999999995 77887777
Q ss_pred HHHHHHHHHHHH
Q 012426 284 ACATAYLQYVVR 295 (464)
Q Consensus 284 ~~~e~li~~i~~ 295 (464)
+..+.++.....
T Consensus 208 e~~~~~~~~~~~ 219 (454)
T 1g5h_A 208 QWLDFWLRHRLL 219 (454)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666654433
No 76
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.86 E-value=0.044 Score=45.39 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=58.4
Q ss_pred CCCEEEEEEEEeee---e----cC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCC
Q 012426 28 VGLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (464)
Q Consensus 28 ~~~~V~v~GwV~~i---R----~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ 97 (464)
.|+.+.+.|.|.++ | +. +++..+.|.|+|| .|.+.+-.+.. ..... +..|++|.|.|.+.+..-
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG--~I~~t~w~~~~--~~~~~--l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG--ELRAVFWTENI--KLLKK--FREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE--EEEEEEETTGG--GGGGT--CCTTSEEEEEEEEECCCS
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC--eEEEEEeCchh--hhhhc--CCCCCEEEEEeeEEcccc
Confidence 46789999999988 2 22 4689999999997 59998876532 12345 999999999999866422
Q ss_pred CCceEEEEEeeEEEEecC
Q 012426 98 SKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 98 ~~~~~el~~~~i~vls~~ 115 (464)
. +.++|.+.+...+.++
T Consensus 89 ~-g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 89 G-GRKEAHLMPRSTVEVL 105 (115)
T ss_dssp S-SSCEEEECTTCCEEEE
T ss_pred C-CeEEEEECCCceEEEC
Confidence 1 3478888766555554
No 77
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=95.78 E-value=0.031 Score=61.89 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCC----CCC-CceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEG----AGE-QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg----~~~-~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (464)
......++.+.+|+.|...||.|+.|..+++...-. ..+ .+.+ .|| .+.+
T Consensus 491 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L--~NP----------------------is~e- 545 (795)
T 2rhq_B 491 ELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISL--LMP----------------------MSEA- 545 (795)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEEC--SSC----------------------SCTT-
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEE--cCC----------------------Cchh-
Confidence 344567788999999999999999999998864211 111 1222 222 0111
Q ss_pred cCcccccccchhHHH-HHHhh----cc--CceEEEccccccCCCCCccccccchhccceecc-------------CCHHH
Q 012426 222 FEKPAFLTVSGQLNA-ETYAT----AL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKD 281 (464)
Q Consensus 222 f~~~~yL~~Spql~l-qll~~----g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~-------------~~~~d 281 (464)
-..|++|-=--+ +.+.. +. -|+||||+|||.+..+ ..| +||++|.+-++. .|+.|
T Consensus 546 ---~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~-~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~d 620 (795)
T 2rhq_B 546 ---HATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEG-ELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFI 620 (795)
T ss_dssp ---SSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTT-SCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHH
T ss_pred ---hhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCcc-cCc-chhhEEEEEEEeccccccccCCCCCCCHHH
Confidence 123554443333 44432 33 3899999999975432 256 899999876655 58999
Q ss_pred HHHHHHHHHHHH
Q 012426 282 DMACATAYLQYV 293 (464)
Q Consensus 282 lm~~~e~li~~i 293 (464)
+...+|.++..+
T Consensus 621 lKg~le~ll~~l 632 (795)
T 2rhq_B 621 AKGVVDRVAEKL 632 (795)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998876
No 78
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.69 E-value=0.035 Score=59.43 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--C------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 149 RVRNALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 149 ~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--e------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
....++.+.+|+.|...||.|+.|+.+++... + ...+.+.+ .|| .+.+
T Consensus 391 ~~~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L--~NP----------------------is~e 446 (589)
T 3l4g_B 391 FPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHI--SNP----------------------KTAE 446 (589)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBB--SSC----------------------SSGG
T ss_pred CHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEE--cCC----------------------Cchh
Confidence 34566789999999999999999999998531 1 11122222 222 0111
Q ss_pred ccCcccccccchhHHH-HHHhhc-----cCceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHH
Q 012426 221 FFEKPAFLTVSGQLNA-ETYATA-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 292 (464)
Q Consensus 221 ~f~~~~yL~~Spql~l-qll~~g-----~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~ 292 (464)
+ ..|++|-=--+ +.+... =-|+||+|+|||.+.. ..+|.+|+.++.+-++.. ++.++-..++.++..
T Consensus 447 ~----svmRtsLlpgLL~~l~~N~~~~~~vrlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 447 F----QVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp G----SEECSCSHHHHHHHHHHTTTSCSCEEEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred H----hHHHHHHHHHHHHHHHHHhcCCCceEEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 1 23555533333 544322 1379999999998765 367889999999877654 588887777766644
No 79
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=95.55 E-value=0.029 Score=52.02 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcc
Q 012426 152 NALAYATHKFFQENGFIWISSPIITASDC-EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (464)
Q Consensus 152 s~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (464)
.++.+.+|+.|...||.||-|-.+++... +... +. |.-.|| .+.+ -
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~--v~l~NP----------------------ls~e----~ 58 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNL--VMLLNP----------------------LSAD----L 58 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGC--EEBSSG----------------------GGCS----C
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCe--EEEeCC----------------------cchh----H
Confidence 45678999999999999999999998542 1110 11 111222 0111 1
Q ss_pred cccccchhHHH-HHHhh----ccC--ceEEEccccccCCCCCc-----cccccchhccceecc-------------CCHH
Q 012426 226 AFLTVSGQLNA-ETYAT----ALS--NVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAF-------------ADLK 280 (464)
Q Consensus 226 ~yL~~Spql~l-qll~~----g~~--rVfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~a~-------------~~~~ 280 (464)
-.|++|-=--+ +.+.. +.. |+||||+||+.++.+.. .+..|..+|-+-++. .|+.
T Consensus 59 ~vmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~ 138 (213)
T 3ig2_A 59 NCMRQTLLFGGLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVY 138 (213)
T ss_dssp CEECSCSHHHHHHHHHHC------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHH
Confidence 24666543333 54443 343 79999999998753211 234577777776655 3677
Q ss_pred HHHHHHHHHHHHH
Q 012426 281 DDMACATAYLQYV 293 (464)
Q Consensus 281 dlm~~~e~li~~i 293 (464)
|+...+|.++..+
T Consensus 139 dlKg~ve~ll~~l 151 (213)
T 3ig2_A 139 ELKAYVENIFKRL 151 (213)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8887777777554
No 80
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=95.49 E-value=0.12 Score=49.74 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=67.8
Q ss_pred ccceecccccCCCCCC-----CCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccch-hhhhcCCCCC
Q 012426 9 RKKLKIVDVKGGPNEG-----LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITT 82 (464)
Q Consensus 9 ~~~~~i~~l~~~~~~~-----~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~-~~~~~~~l~~ 82 (464)
.+.++|++|++..... ....=..|++.|+|.++...+...-+.|.|+|| ..|.+.+..+...- ..... +..
T Consensus 46 l~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~~~~~~~L~D~TG-~~I~~k~W~~~~~~~~~~~~--~~~ 122 (270)
T 2pi2_A 46 IVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPP 122 (270)
T ss_dssp CEECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCT
T ss_pred eEEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEeccceEEEEEECCCC-CEEEEEEEcCcCcccchhhc--CCC
Confidence 3567889988752110 011124799999999998888777788999997 14888887543211 11234 999
Q ss_pred CcEEEEEEEEEeCCCCCceEEEEEeeEEEEec
Q 012426 83 GASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 83 g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~ 114 (464)
|++|.|.|.+..=+ +...|.+..|..+..
T Consensus 123 G~yVrV~G~v~~f~---g~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 123 ETYVKVAGHLRSFQ---NKKSLVAFKIMPLED 151 (270)
T ss_dssp TCEEEEEEEEEEET---TEEEEEEEEEEECSC
T ss_pred CCEEEEEEEEEecC---CeeEEEEEEEEecCC
Confidence 99999999998754 236778877766554
No 81
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.44 E-value=0.068 Score=44.09 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=59.7
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEE
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~ 91 (464)
++++++... ..+..|++.|.|.+.-..- - ...+|++| .|+|-++.+. +....+++++-|.+.|+
T Consensus 26 ~TV~~a~~~------~Dd~~V~L~G~Iv~~~~~d--~-Y~F~D~TG--~I~VeId~~~-----w~g~~v~p~~~Vri~Ge 89 (109)
T 1nnx_A 26 TTVESAKSL------RDDTWVTLRGNIVERISDD--L-YVFKDASG--TINVDIDHKR-----WNGVTVTPKDTVEIQGE 89 (109)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETT--E-EEEEETTE--EEEEECCGGG-----STTCCCCTTSCEEEEEE
T ss_pred EeHHHHhhC------cCCCeEEEEEEEEEEeCCC--e-EEEECCCc--cEEEEEChhh-----cCCcccCCCCEEEEEEE
Confidence 566666653 5678999999997654332 2 45899997 4999887542 22123999999999999
Q ss_pred EEeCCCCCceEEEEEeeEEEEec
Q 012426 92 VVPSQGSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 92 v~~~~~~~~~~el~~~~i~vls~ 114 (464)
|-+.-. ..||.|..|+++.+
T Consensus 90 vDkd~~---~~eIdV~~i~~~~~ 109 (109)
T 1nnx_A 90 VDKDWN---SVEIDVKQIRKVNP 109 (109)
T ss_dssp EEEETT---EEEEEEEEEEEC--
T ss_pred ECCCCC---ceEEEEEEEEEccC
Confidence 987542 36999999988753
No 82
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=95.07 E-value=0.17 Score=51.14 Aligned_cols=78 Identities=13% Similarity=0.245 Sum_probs=61.8
Q ss_pred CCCCEEEEEEEEeee-ec-CCCeEEEEEEeCcCCcceEEEEeCCccchhh-hhcCCCCCCcEEEEEEEEEeCCCCCceEE
Q 012426 27 RVGLMIVVAGWVRTL-RA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (464)
Q Consensus 27 ~~~~~V~v~GwV~~i-R~-~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~e 103 (464)
.....++|.|.|.+. +. .|+=+|+.|.|+++ .|.|++=+....|.. ++. |.+||.|.|.|.+.. + .
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~--~i~c~ayeptk~fr~~vr~--L~~GD~V~v~G~v~~-----g--t 350 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFG--SVKCAAFEPTKQFRNVIRL--LRKGDVVEVYGSMKK-----D--T 350 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETTTEEEEEEEETTE--EEEEEECGGGTTHHHHHTT--CCTTCEEEEEEEEET-----T--E
T ss_pred ccCceEEEEEEEecCcEeccCceEEEEEEcCCC--EEEEEEEccchHHHHHHhc--CCCCCEEEEEEeecC-----C--E
Confidence 345789999999988 55 48899999999864 588887543334544 567 999999999999765 2 8
Q ss_pred EEEeeEEEEecC
Q 012426 104 LKVNKIVLVGKS 115 (464)
Q Consensus 104 l~~~~i~vls~~ 115 (464)
|.++++++++-+
T Consensus 351 LnvEk~~v~~l~ 362 (402)
T 3au7_A 351 INLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEEECC
T ss_pred EEEEEEEEcccC
Confidence 899999999774
No 83
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=94.66 E-value=0.098 Score=48.34 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCCC-C--ceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 012426 152 NALAYATHKFFQENGFIWISSPIITASDC-EGAGE-Q--FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (464)
Q Consensus 152 s~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~~-~--F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~y 227 (464)
.++.+.+|+.|...||.||-|-.+++... +.... . =.|.-.|| .+ ..--.
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NP----------------------ls----~e~~v 60 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNP----------------------LS----QELNC 60 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSB----------------------SC----SSEEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCC----------------------cc----HHHHH
Confidence 46778999999999999999999998542 11100 0 00111122 01 11124
Q ss_pred cccchhHHH-HHHh----hccC--ceEEEccccccCCCC----C-ccccccchhccceecc-------------CCHHHH
Q 012426 228 LTVSGQLNA-ETYA----TALS--NVYTFGPTFRAENSN----T-SRHLAEFWMIEPELAF-------------ADLKDD 282 (464)
Q Consensus 228 L~~Spql~l-qll~----~g~~--rVfeI~~~FR~E~~~----t-~rHl~EFtmlE~e~a~-------------~~~~dl 282 (464)
|++|-=--| +.+. .+.. |+||||+||+.++.+ . ..+..|..+|-+-+++ .|+.|+
T Consensus 61 mRtsLlpgLL~~~~~N~~r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~ 140 (213)
T 3ica_A 61 MRQTLLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFEL 140 (213)
T ss_dssp ECSSSHHHHHHHHHHHHTTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHH
T ss_pred HHHHhHHHHHHHHHHHHcCCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHH
Confidence 666543333 4443 3554 799999999976531 0 1344677777766544 478999
Q ss_pred HHHHHHHHHHH
Q 012426 283 MACATAYLQYV 293 (464)
Q Consensus 283 m~~~e~li~~i 293 (464)
...+|.++..+
T Consensus 141 Kg~ve~ll~~l 151 (213)
T 3ica_A 141 KAVVEQVLCRV 151 (213)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 98888887654
No 84
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=94.03 E-value=0.49 Score=43.70 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=58.6
Q ss_pred CCEEEEEEEEeeeecCC--------CeEEEEEEeCcCC-cceEEEEeCCccchhh----hhcCCCCCCcEEEEEEEEEeC
Q 012426 29 GLMIVVAGWVRTLRAQS--------SVTFIEVNDGSCL-SNMQCVMTSDAEGYDQ----VKSGLITTGASIWIQGNVVPS 95 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~g--------~~~Fi~LrD~sg~-~~iQvv~~~~~~~~~~----~~~~~l~~g~~V~V~G~v~~~ 95 (464)
=+.|.|.|.|..++..- ...|+.|.|.||. ..|.|.++.. .+.. +.. ...|.+|.|+|.+..-
T Consensus 85 I~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~--~~~~~gl~l~~--~~~G~iV~VkG~i~~~ 160 (220)
T 3kf8_A 85 VNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQE--QFKEVGLTLDK--KNYGKIVELEGEIYNW 160 (220)
T ss_dssp ECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHH--HHHTTTCCTTS--CCTTCEEEEEEEEEEC
T ss_pred cEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHH--HhhccCccccc--cCCCeEEEEEEEEEee
Confidence 36799999999997642 4699999999984 2466655532 1211 112 5689999999999875
Q ss_pred CC-----CCceEEEEEeeEEEEecC
Q 012426 96 QG-----SKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 96 ~~-----~~~~~el~~~~i~vls~~ 115 (464)
.. +.-.-||+++++.+++..
T Consensus 161 r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 161 YDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred ccccccccccceEEEEEEEEEeccC
Confidence 32 111359999999999875
No 85
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=93.93 E-value=0.79 Score=37.53 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=57.5
Q ss_pred CCEEEEEEEEeeeecC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE-EEEEeCCCCCceEEE
Q 012426 29 GLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVEL 104 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~-G~v~~~~~~~~~~el 104 (464)
++.|.+.|+|.++-.. +....+.|.|.||. |-+++..+. .+.. +..|++|.|. |.+..-+ +.++|
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~--I~~t~W~~~----~~~~--~~~G~~V~i~n~~v~~~~---G~~~L 83 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLGDETGI--IKFTIWKNA----ELPL--LEQGESYLLRSVVVGEYN---DRFQV 83 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCC--EEEEEEGGG----CCCC--CCTTCEEEEEEEEEEEET---TEEEE
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCe--EEEEEECcc----cccc--cCCCCEEEEEEEEEEEEC---CEEEE
Confidence 5789999999887442 33445889999984 888887532 1234 9999999999 6766643 44899
Q ss_pred EEeeEEEEecCCCC
Q 012426 105 KVNKIVLVGKSDPS 118 (464)
Q Consensus 105 ~~~~i~vls~~~~~ 118 (464)
.+.+...+.+....
T Consensus 84 ~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 84 QVNKNSSIEKLSEP 97 (109)
T ss_dssp EECSSSEEEECSSC
T ss_pred EECCceEEEECCCc
Confidence 99887777665433
No 86
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=93.11 E-value=1.1 Score=36.36 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=61.3
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeee-----cCCC---eEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCC
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----AQSS---VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR-----~~g~---~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (464)
.+|+||... ...|.+.|.|.++- +.|+ +.=+.|.|.||. |.+.+-.+ . +..|
T Consensus 4 ~kI~dl~pg--------~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~--I~~tlW~~--------~--l~~G 63 (106)
T 2k75_A 4 VKIRDVSLS--------TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTAR--IRISSFGK--------Q--LQDS 63 (106)
T ss_dssp CCSTTCCTT--------CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCE--EEEEEESS--------C--CCTT
T ss_pred EEHHHcCCC--------CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCe--EEEEEEcC--------c--cCCC
Confidence 456666542 34588888886652 2343 667889999974 88877654 2 8999
Q ss_pred cEEEEE-EEEEeCCCCCceEEEEEeeEEEEecCCCCCCCC
Q 012426 84 ASIWIQ-GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (464)
Q Consensus 84 ~~V~V~-G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~ 122 (464)
|+|.|. |.+..-+ +.++|.+.+...+.+.....|+.
T Consensus 64 dvv~i~ng~v~~~~---g~~~L~v~~~~~I~~~~~~~~~~ 100 (106)
T 2k75_A 64 DVVRIDNARVAQFN---GYLSLSVGDSSRIESVNVNIPLE 100 (106)
T ss_dssp EEEEEEEEEEEEET---TEEEEEECTTSEEEECCSCCCCS
T ss_pred CEEEEEeeEEeEEC---CEEEEEECCcEEEEECCCCCccc
Confidence 999999 7775543 45899998877777765445654
No 87
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.80 E-value=0.37 Score=40.02 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=45.4
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEE
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~ 106 (464)
..|++|++-|+|.+++. + . +.|..+.+ +.|+|.++... . +..+.+|.|.|+|.....+-|+..|.+
T Consensus 16 ~~g~~VrivGkV~~~~g-~--~-~~l~s~d~-~~Vtv~l~~~~-------~--~~~~~~vEViG~V~~~~~~~~~~~I~~ 81 (114)
T 4gop_A 16 YVGQTVRIVGKVHKVTG-N--T-LLMQTSDL-GNVEIAMTPDS-------D--VSSSTFVEVTGKVSDAGSSFQANQIRE 81 (114)
T ss_dssp GTTSEEEEEEEEEEEET-T--E-EEEECTTS-CEEEEECCSSC-------C--GGGCSEEEEEEEECTTSSEEEEEEEEE
T ss_pred hCCCeEEEEEEEeeeCC-C--E-EEEEeCCC-CEEEEEeCCCC-------C--cccCcEEEEEEEEcCCCCcccCCeEEE
Confidence 68999999999999996 2 2 44665444 35777766532 2 567899999999975432223355555
Q ss_pred e
Q 012426 107 N 107 (464)
Q Consensus 107 ~ 107 (464)
.
T Consensus 82 ~ 82 (114)
T 4gop_A 82 F 82 (114)
T ss_dssp C
T ss_pred E
Confidence 4
No 88
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=92.76 E-value=0.88 Score=37.76 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=54.0
Q ss_pred CEEEEEEEEeee---e----cCC--CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE-EEEEeCCCCC
Q 012426 30 LMIVVAGWVRTL---R----AQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSK 99 (464)
Q Consensus 30 ~~V~v~GwV~~i---R----~~g--~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~-G~v~~~~~~~ 99 (464)
..|.+.|.|.++ | +.| .+.=+.|.|.||. |.+.+.... ... +..|++|.|. |.+..-+
T Consensus 13 ~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~--I~~tlW~~~-----~~~--~~~G~vv~i~~g~v~~~~--- 80 (119)
T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR--VKLTLWGKH-----AGS--IKEGQVVKIENAWTTAFK--- 80 (119)
T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE--EEEEEEGGG-----TTC--CCTTCEEEEEEEEEEEET---
T ss_pred CcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE--EEEEEECCh-----hhc--CCCCCEEEEEeEEEEEeC---
Confidence 358899999877 4 224 4667789999984 888877542 134 8999999999 8886643
Q ss_pred ceEEEEEeeEEEEecCC
Q 012426 100 QKVELKVNKIVLVGKSD 116 (464)
Q Consensus 100 ~~~el~~~~i~vls~~~ 116 (464)
+.++|.+.+...+.++.
T Consensus 81 g~~qL~i~~~~~i~~~~ 97 (119)
T 1o7i_A 81 GQVQLNAGSKTKIAEAS 97 (119)
T ss_dssp TEEEEEECTTCEEEECC
T ss_pred CEEEEEECCCEEEEEcC
Confidence 44899998755555543
No 89
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=92.14 E-value=0.48 Score=52.24 Aligned_cols=110 Identities=12% Similarity=-0.009 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC----CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~----eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
......++.+.+|+.|...||.|+-|..+++... ....+.+.+ .|| .+.++
T Consensus 487 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L--~NP----------------------is~d~- 541 (785)
T 1b7y_B 487 GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLL--LNP----------------------LAPEK- 541 (785)
T ss_dssp STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEE--SSC----------------------SSTTS-
T ss_pred cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEE--cCC----------------------Cchhh-
Confidence 3444677889999999999999999998887631 101222333 232 01111
Q ss_pred CcccccccchhHHH-HHHh----hc-c--CceEEEccccccCCCCCccccccchhccceecc------------CCHHHH
Q 012426 223 EKPAFLTVSGQLNA-ETYA----TA-L--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF------------ADLKDD 282 (464)
Q Consensus 223 ~~~~yL~~Spql~l-qll~----~g-~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~------------~~~~dl 282 (464)
-.|++|-=--+ +.+. .+ . -|+||+|+||| + .||++|..-++. .|+.|+
T Consensus 542 ---svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dl 609 (785)
T 1b7y_B 542 ---AALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLL 609 (785)
T ss_dssp ---SEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHH
T ss_pred ---hhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHH
Confidence 23555433333 4433 23 3 37899999999 2 588888876655 479999
Q ss_pred HHHHHHHHHHH
Q 012426 283 MACATAYLQYV 293 (464)
Q Consensus 283 m~~~e~li~~i 293 (464)
...+|.++..+
T Consensus 610 Kg~le~ll~~l 620 (785)
T 1b7y_B 610 KGYLEALFARL 620 (785)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998876
No 90
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=92.10 E-value=0.79 Score=38.39 Aligned_cols=71 Identities=8% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEE
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~ 106 (464)
..|++|++-|+|.+++..|+.+-+.-.|+ +.++|.++.... ...+.+|.|.|+|... .+|.+
T Consensus 20 fvgk~VrivGkV~~~~~~g~~~~l~s~Dg---~~Vtv~l~~p~~---------~~l~~~vEViG~V~~~------~tI~~ 81 (121)
T 3kdf_A 20 FIDKPVCFVGRLEKIHPTGKMFILSDGEG---KNGTIELMEPLD---------EEISGIVEVVGRVTAK------ATILC 81 (121)
T ss_dssp GTTCEEEEEEEEEEECTTSSEEEEECTTS---CEEEEECSSCCS---------SCCCSEEEEEEEECTT------SCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEEEEEeCCC---CEEEEEeCCCCC---------cccCcEEEEEEEECCC------CeEEE
Confidence 68999999999999998776554444444 258887765321 2225599999999631 46788
Q ss_pred eeEEEEecC
Q 012426 107 NKIVLVGKS 115 (464)
Q Consensus 107 ~~i~vls~~ 115 (464)
..+.-++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 777777654
No 91
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=92.05 E-value=0.84 Score=39.36 Aligned_cols=90 Identities=10% Similarity=0.103 Sum_probs=56.4
Q ss_pred CCCCCcccccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCC
Q 012426 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (464)
Q Consensus 1 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l 80 (464)
|++.|.....++.-+-|.. ..|++|+|-|+|.++-..|+.+ .|+...+ ..|+|.++... . -
T Consensus 22 ~~~~m~~~~pRVN~s~L~~-------fvGk~VriVGkV~~~~~~G~~~--~l~s~Dg-~~VtV~l~~pL-------~--~ 82 (142)
T 2pi2_E 22 MVDMMDLPRSRINAGMLAQ-------FIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--E 82 (142)
T ss_dssp -CCGGGSCCEEECGGGGGG-------STTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--S
T ss_pred ccccccCCcceECHHHHHh-------hCCCEEEEEEEEeEEcCCCCEE--EEEeCCC-cEEEEEeCCCC-------C--c
Confidence 3445555555555554443 6899999999999994444433 4565554 35777765321 1 2
Q ss_pred CCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecC
Q 012426 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~ 115 (464)
..+-+|.|.|+|... .+|.+..+.-++..
T Consensus 83 ~~~~~VEViG~V~~~------~tI~~~~~~~fGd~ 111 (142)
T 2pi2_E 83 EISGIVEVVGRVTAK------ATILCTSYVQFKED 111 (142)
T ss_dssp CCCSEEEEEEEECTT------SCEEEEEEEECCCS
T ss_pred cCCCEEEEEEEECCC------CcEEEEEEEecCCC
Confidence 457799999999441 35677766666553
No 92
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=90.01 E-value=0.81 Score=37.96 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=40.0
Q ss_pred eEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCC
Q 012426 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (464)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~ 121 (464)
|+||+-.+.. +.++. |..|+-|.|+|.+.........++|+++.|+.|+.....-|+
T Consensus 49 i~vv~~Gk~A--E~~~~--l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~~ 105 (115)
T 3fhw_A 49 ISAVALGDLA--LLLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDPL 105 (115)
T ss_dssp EEEEEETHHH--HHHTT--CCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC---
T ss_pred EEEEEEhHHH--Hhhhc--cCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCCc
Confidence 7787775432 12455 999999999999987433335699999999999876544454
No 93
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=89.81 E-value=0.35 Score=55.59 Aligned_cols=80 Identities=10% Similarity=0.202 Sum_probs=47.3
Q ss_pred CCCCEEEEEEEEeeeecC----C-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCce
Q 012426 27 RVGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~----g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (464)
..|+.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++. |+..+. .|..+.+|.|+|+|.... .
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~--~evvvf~~~--~~~~~~-~l~~~~~~~v~G~v~~~~----~ 1110 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGA--LEVVVFGRA--YEGVSP-KLKEDIPLLVLAEVEKGE----E 1110 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEE--EEEC----------------CTTCEEEEEEEEC--------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCC--EEEEEcHHH--HHHHHH-HhccCCEEEEEEEEEECC----C
Confidence 357889999999988763 2 4999999999974 888876543 444332 489999999999997643 2
Q ss_pred EEEEEeeEEEEecC
Q 012426 102 VELKVNKIVLVGKS 115 (464)
Q Consensus 102 ~el~~~~i~vls~~ 115 (464)
+.|.+.++.-++.+
T Consensus 1111 ~~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1111 LRVLAQAVWTLEEV 1124 (1220)
T ss_dssp -CEEEEEEEEHHHH
T ss_pred cEEEEeeeecHHHH
Confidence 67888888766543
No 94
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=87.10 E-value=0.92 Score=37.38 Aligned_cols=92 Identities=10% Similarity=0.156 Sum_probs=62.2
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEeCcCCcceEEEEeCCccchhhh-hcCCC
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLI 80 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~-~~~~l 80 (464)
-+.|++|... ....+|+|||.++ |. .|++.=++|.|.+| .|++.+-.+.. +.+ .. |
T Consensus 4 ~~~Is~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~--~~f~~~--l 69 (114)
T 1ynx_A 4 IFAIEQLSPY--------QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFA--TKFNEI--L 69 (114)
T ss_dssp BCCGGGCCTT--------TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHH--HHHHHH--S
T ss_pred eEEHHHCCCC--------CCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHH--HHHHhh--c
Confidence 3567777653 2348899999854 21 36788888999998 69999875421 222 34 9
Q ss_pred CCCcEEEEEEE-EEeCCCC----CceEEEEEeeEEEEecCC
Q 012426 81 TTGASIWIQGN-VVPSQGS----KQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 81 ~~g~~V~V~G~-v~~~~~~----~~~~el~~~~i~vls~~~ 116 (464)
..|+++.|.+- |...... ...+||....-+.+.+|.
T Consensus 70 ~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 70 QEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp CSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred ccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 99999999874 4443221 246899888777777764
No 95
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=83.29 E-value=2.1 Score=39.93 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=62.4
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEeCcCCcceEEEEeCCccchhhh-hcCC
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGL 79 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~-~~~~ 79 (464)
.-+.|++|... ....+|+|||.++ |. .|++.-++|.|.+| .|++.+..+.. +.+ ..
T Consensus 7 ~~~~I~~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~--~~~~~~-- 72 (246)
T 1jmc_A 7 KVVPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQV--DKFFPL-- 72 (246)
T ss_dssp CBCCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHH--HHHGGG--
T ss_pred ceEEHHHCCCC--------CCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHH--HHhhhh--
Confidence 34668888663 2357999999875 32 25677788999998 59999885421 222 34
Q ss_pred CCCCcEEEEEEE-EEeCC----CCCceEEEEEeeEEEEecCC
Q 012426 80 ITTGASIWIQGN-VVPSQ----GSKQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 80 l~~g~~V~V~G~-v~~~~----~~~~~~el~~~~i~vls~~~ 116 (464)
|..|+++.+.+- |.... .....+||....-+.+.++.
T Consensus 73 l~~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 73 IEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CCTTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred cccCCEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 999999999874 43331 11346899887666666654
No 96
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=82.59 E-value=5.9 Score=31.21 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=46.0
Q ss_pred CCCCEEEEEEEEeeeecC----CCeEEEE-EEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCC
Q 012426 27 RVGLMIVVAGWVRTLRAQ----SSVTFIE-VNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~----g~~~Fi~-LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
..|+-|.|+|-|..||+. |+.-||. .||....-.-.+.++-..-+...+.. |+.|++..+.|.|..-+
T Consensus 47 ylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsadvea--lsngsvativgqvhqvq 119 (133)
T 3f1z_A 47 YLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEA--LSNGSVATIVGQVHQVQ 119 (133)
T ss_dssp HTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHHHHTT--CCTTSEEEEEEECCCCC
T ss_pred hhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcchhhHh--hcCCceeeEeeeeeeee
Confidence 568999999999999884 5677765 78865321112233322222234667 99999999999987654
No 97
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=81.77 E-value=2.5 Score=34.18 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=35.0
Q ss_pred eEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEE
Q 012426 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (464)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vl 112 (464)
++|++-.+.. + +.. |..|+-|.|+|.+....-+...+.+++++|+.+
T Consensus 55 i~vv~~gk~A--e-~~~--l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQA--E-EWQ--YRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHH--H-HST--TCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHh--h-hhc--cCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 5555544321 2 445 999999999999997765555799999999876
No 98
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=81.23 E-value=11 Score=32.27 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=49.7
Q ss_pred CCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEee
Q 012426 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~ 108 (464)
=..|+++|-|... +.|. +.|+|+||. +-+-.-.+.+. --.. +..|..|.|.|.+..+.. .-.|++.+
T Consensus 58 ~s~VWmQG~VV~~-~~g~---~~LdDgTG~--~~v~g~~~vp~--g~p~--l~~G~YVMV~G~v~~~s~---eP~i~AvK 124 (150)
T 3mxn_B 58 LAAVWMQGRVVMA-DRGE---ARLRDPSGD--FSVRGLERVPR--GRPC--LVPGKYVMVMGVVQACSP---EPCLQAVK 124 (150)
T ss_dssp CSEEEEEEEEEEE-ETTE---EEEEETTEE--EEEECGGGSCC--CSCC--CSTTCEEEEEEEEEECSS---SCEEEEEE
T ss_pred eEEEEEEeEEEEe-CCCe---EEEECCCce--EEEeeccccCC--CCcc--cCCCCEEEEEEEEEecCC---CceEEEEE
Confidence 4679999999996 4453 669999985 33211111110 0113 889999999999987542 36888888
Q ss_pred EEEEecC
Q 012426 109 IVLVGKS 115 (464)
Q Consensus 109 i~vls~~ 115 (464)
+.=||..
T Consensus 125 m~DLS~~ 131 (150)
T 3mxn_B 125 MTDLSDN 131 (150)
T ss_dssp EEECCSC
T ss_pred eeeCCCC
Confidence 8877773
No 99
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=80.10 E-value=17 Score=30.82 Aligned_cols=90 Identities=21% Similarity=0.271 Sum_probs=56.7
Q ss_pred eecccccCCCC--CCCCCCCCEEEEEEEEe--eeecC---CCeEEEEEEe-CcCCcceEEEEeCCccchhhhhcCCCCCC
Q 012426 12 LKIVDVKGGPN--EGLDRVGLMIVVAGWVR--TLRAQ---SSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (464)
Q Consensus 12 ~~i~~l~~~~~--~~~~~~~~~V~v~GwV~--~iR~~---g~~~Fi~LrD-~sg~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (464)
.+..++..... +.....++.|+|.|.|. ++.+. ..+.|. |.| +. ..|.|....-.+. +.+.|
T Consensus 13 ~tpsei~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~--~~v~V~Y~GilPD-------lFrEG 82 (136)
T 1j6q_A 13 YTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFA-VHDSLG--GEILVTYDDLLPD-------LFREG 82 (136)
T ss_dssp ECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEECTTSSCEEEE-EECTTC--CCEEEEECSCCTT-------SCCSS
T ss_pred eCHHHHHcCcccccccCCCCCEEEEeEEEeCCcEEecCCCCEEEEE-EEcCCC--CEEEEEECCCCCc-------cccCC
Confidence 45566654310 00135789999999996 45442 357776 688 54 3688888754432 37889
Q ss_pred cEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCC
Q 012426 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSY 119 (464)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~ 119 (464)
.-|.|+|++... + .++++ +||.||+..|
T Consensus 83 qgVVa~G~l~~~--g----~F~A~--eVLaKhdekY 110 (136)
T 1j6q_A 83 QGIVAQGVLGED--G----KLAAT--EVLAKHDENY 110 (136)
T ss_dssp SEEEEEEEECST--T----SEEEE--EEECCC----
T ss_pred CeEEEEEEECCC--C----eEEEE--EEEecCCCCC
Confidence 999999998542 1 24555 5999998664
No 100
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=78.72 E-value=17 Score=30.76 Aligned_cols=76 Identities=21% Similarity=0.360 Sum_probs=54.5
Q ss_pred CCCCCEEEEEEEEe--eeecC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCc
Q 012426 26 DRVGLMIVVAGWVR--TLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (464)
Q Consensus 26 ~~~~~~V~v~GwV~--~iR~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~ 100 (464)
...++.|+|.|.|. ++... ..+.|. |.|+.. .|.|....-.+. +.+.|.-|.|+|++... +
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~--~v~V~Y~GilPD-------lFrEGqgVVa~G~l~~~----g 90 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTFT-IYDAEG--SVDVSYEGILPD-------LFREGQGVVVQGELEKG----N 90 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEEE-EECSSC--EEEEEEESCCCT-------TCCTTSEEEEEEEECSS----S
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEEE-EEeCCc--EEEEEECCCCCc-------cccCCCeEEEEEEECCC----C
Confidence 35789999999998 45432 247766 788753 688888765432 37889999999998542 1
Q ss_pred eEEEEEeeEEEEecCCCCC
Q 012426 101 KVELKVNKIVLVGKSDPSY 119 (464)
Q Consensus 101 ~~el~~~~i~vls~~~~~~ 119 (464)
.+.++ +||.||+..|
T Consensus 91 --~F~A~--eVLAKhdekY 105 (136)
T 1sr3_A 91 --HILAK--EVLAKHDENY 105 (136)
T ss_dssp --EEEES--SCBCCSCCCC
T ss_pred --eEEEE--EEEecCCCCC
Confidence 35665 4899998664
No 101
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=75.18 E-value=18 Score=40.83 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=54.8
Q ss_pred CCEEEEEEEEeee--ecC--C-CeEEEEEEeCcCCcceEEEE-eCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 29 GLMIVVAGWVRTL--RAQ--S-SVTFIEVNDGSCLSNMQCVM-TSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 29 ~~~V~v~GwV~~i--R~~--g-~~~Fi~LrD~sg~~~iQvv~-~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
...|+|.|.|-.+ |.. | .+.-+.|.|.++. |.|.. .++...-+.+.. |..|++|.|.|.+.-..-. +++
T Consensus 17 ~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~--~~~k~f~~~~~~~~~~~~--~~~g~~~~~~g~~~~d~~~-~~~ 91 (1041)
T 3f2b_A 17 ERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNS--ILVKMFSRDKEDAELMSG--VKKGMWVKVRGSVQNDTFV-RDL 91 (1041)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCE--EEEEEECSSHHHHHHHHT--CCTTCEEEEEEEEEEETTT-TEE
T ss_pred cceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCC--EEEEEeecccchHHHHhc--CCCCCEEEEEEEEEeccCC-cce
Confidence 3579999999755 432 3 4666789999863 66643 333222223556 9999999999999865533 347
Q ss_pred EEEEeeEEEEec
Q 012426 103 ELKVNKIVLVGK 114 (464)
Q Consensus 103 el~~~~i~vls~ 114 (464)
.+.+.+|..+.+
T Consensus 92 ~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 92 VIIANDLNEIAA 103 (1041)
T ss_dssp EEEEEEEEEECC
T ss_pred EEEeeeeEEecc
Confidence 788888876664
No 102
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=74.43 E-value=15 Score=27.66 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=35.2
Q ss_pred CCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
.|+. +.|.|.++...| +|++|.++ +...+..+......++. +..||.|.|.
T Consensus 5 ~G~i--v~G~V~~v~~~G--~fV~l~~~-----~~Gllh~sel~~~~~~~--~~~Gd~V~v~ 55 (80)
T 2k52_A 5 PGKF--YKGVVTRIEKYG--AFINLNEQ-----VRGLLRPRDMISLRLEN--LNVGDEIIVQ 55 (80)
T ss_dssp TTCE--EEEEEEEEETTE--EEEEEETT-----EEEEECGGGCSSCCGGG--CCTTCEEEEE
T ss_pred CCCE--EEEEEEEEeCCE--EEEEECCC-----CEEEEEHHHCCccccee--eCCCCEEEEE
Confidence 4443 889999999877 99999763 55676654321111245 9999999876
No 103
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=70.15 E-value=11 Score=30.23 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=32.2
Q ss_pred eEEEEeCCccchhh-hhcCCCCCCcEEEEEEEEEeCC--CCCceEEEEEeeEEEEec
Q 012426 61 MQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQ--GSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 61 iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~--~~~~~~el~~~~i~vls~ 114 (464)
++|++-.+.. +. .+. |..|+.|.|+|.+.... .|....+|++++++.|+.
T Consensus 50 ~~vv~~g~~A--e~~~~~--l~KG~~V~V~G~L~~~~~~~G~~r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHEN--QAITHS--ITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTT--HHHHTT--CCTTCEEEEEEEEEC--------CCEEEEEEEEEC--
T ss_pred EEEEEEhHHH--HHHHhh--CCCCCEEEEEEEEEeccCCCCCEEEEEEEEEEEECcC
Confidence 6777665431 12 245 99999999999998752 222238999999998864
No 104
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=64.43 E-value=12 Score=41.18 Aligned_cols=111 Identities=11% Similarity=0.087 Sum_probs=65.3
Q ss_pred HHHHHHHHhhhCCcEEEeCceEeecCC----CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc
Q 012426 154 LAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (464)
Q Consensus 154 i~~~~r~ff~~~gF~EV~TP~L~~~~~----eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~ 229 (464)
..+.+|+.|...||.|+-|-.+++... .+..+. +.-.|| .+.++ -.|+
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~--v~l~NP----------------------is~e~----svmR 545 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEA--LLLPSP----------------------ISVEM----SAMR 545 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCC--CBCSSC----------------------SCSTT----CEEC
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCe--EEEcCC----------------------CchhH----HHHH
Confidence 356789999999999999999987431 111121 211233 01111 2466
Q ss_pred cchhHHH-HHHh----hcc--CceEEEccccccCCCCCccccccchhccceecc-------------CCHHHHHHHHHHH
Q 012426 230 VSGQLNA-ETYA----TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMACATAY 289 (464)
Q Consensus 230 ~Spql~l-qll~----~g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~-------------~~~~dlm~~~e~l 289 (464)
+|-=--| +.+. .+. -|+||||+||+.++.. ..+..|..+|=+-+++ .|+.++...+|.+
T Consensus 546 tsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~-~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~l 624 (795)
T 3pco_B 546 LSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQA-PLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV 624 (795)
T ss_dssp SSSHHHHHHHHHHHHTSSCCCCEEEEEEEEEEECTTS-STTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCccEEEeeeEEecCCCc-ccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHH
Confidence 6643333 4433 244 3799999999875531 2334455555443322 3789998888887
Q ss_pred HHHH
Q 012426 290 LQYV 293 (464)
Q Consensus 290 i~~i 293 (464)
+..+
T Consensus 625 l~~l 628 (795)
T 3pco_B 625 LDLT 628 (795)
T ss_dssp TTTS
T ss_pred HHHc
Confidence 7543
No 105
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=61.83 E-value=32 Score=28.97 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=36.1
Q ss_pred eEEEEeCCccchhhh-hcCCCCCCcEEEEEEEEEeCC--CCCceEEEEEeeEEEEecC
Q 012426 61 MQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQ--GSKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 61 iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~--~~~~~~el~~~~i~vls~~ 115 (464)
++||+-.+.. +.+ +. |.+|+-|.|+|.+.... .++..+.+++++|+.|+..
T Consensus 67 i~vv~wGk~A--E~~~~y--l~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 67 MPVIVSGHEN--QAITHS--ITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSV 120 (134)
T ss_dssp EEEEEESTGG--GGGGTT--CCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTSC
T ss_pred EEEEEEhHHH--HHHHHh--cCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcCC
Confidence 6777775532 112 34 99999999999998753 2334578899999998653
No 106
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=61.37 E-value=9.4 Score=38.85 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=61.2
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCC
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (464)
+.|++|... ....+|.|||.++ |. .|++.-++|.|.+| .|++++..+.. +.+. .+|..
T Consensus 4 ~~I~~L~p~--------~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~--~~f~-~~l~e 70 (444)
T 4gop_C 4 YPIEGLSPY--------QNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG--EIKATGFNDAV--DRFY-PLLQE 70 (444)
T ss_dssp CCSTTCCTT--------CCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEETHHH--HHHT-TTCCT
T ss_pred eeHHHCCCC--------CcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC--EEEEEEeHHHH--HHHH-Hheec
Confidence 567777653 1357999999853 42 25778889999987 59999886521 2222 13999
Q ss_pred CcEEEEEEE-EEeCCC----CCceEEEEEeeEEEEecCC
Q 012426 83 GASIWIQGN-VVPSQG----SKQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 83 g~~V~V~G~-v~~~~~----~~~~~el~~~~i~vls~~~ 116 (464)
|+++.+.+- |..... ....+||....-+.+.++.
T Consensus 71 G~vy~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~ 109 (444)
T 4gop_C 71 NHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECT 109 (444)
T ss_dssp TCEEEEESCEEEECCGGGCSCCCSEEEEECTTCEEEECS
T ss_pred CCEEEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEcc
Confidence 999999874 433321 2345899887655555553
No 107
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=61.23 E-value=5.7 Score=32.10 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=35.0
Q ss_pred CCCCCcccccceecccccCCCCC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc--h-hh
Q 012426 1 MGSKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y-DQ 74 (464)
Q Consensus 1 ~~~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~--~-~~ 74 (464)
|||.-+---.+..++++...+-+ ..-..|+. +.|.|.++...| +|++|.++ +..++...... + +.
T Consensus 1 ~~~~~~~~~~~~~iKq~~~~p~~~~~~~~~~G~i--v~G~V~~v~~~G--~fV~l~~~-----~~Gll~~sel~~~~~~~ 71 (109)
T 2khj_A 1 MGSSHHHHHHSSGLVPRGSHMFNNWVALNKKGAI--VTGKVTAVDAKG--ATVELADG-----VEGYLRASEASRDRVED 71 (109)
T ss_dssp --------------------CHHHHTTTCCSSSE--EEEEEEEECSSC--EEEECSTT-----CBCCBCTTCCCSSSSSS
T ss_pred CCccccccccccchhhcccCHHHHHhhcCCCCCE--EEEEEEEEECCe--EEEEECCC-----CEEEEEHHHcCcccccC
Confidence 56665555555666666654321 11244664 789999999887 99999653 33455443211 1 11
Q ss_pred h-hcCCCCCCcEEEEE
Q 012426 75 V-KSGLITTGASIWIQ 89 (464)
Q Consensus 75 ~-~~~~l~~g~~V~V~ 89 (464)
. +. +.+||.|.|.
T Consensus 72 ~~~~--~~vGd~V~v~ 85 (109)
T 2khj_A 72 ATLV--LSVGDEVEAK 85 (109)
T ss_dssp GGGS--CCTTCEEEEE
T ss_pred hhhc--cCCCCEEEEE
Confidence 2 24 8999999876
No 108
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=58.25 E-value=22 Score=28.43 Aligned_cols=46 Identities=9% Similarity=0.192 Sum_probs=30.2
Q ss_pred eEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEE
Q 012426 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (464)
|+||+-.+.. +.+.. +..|+-|.|+|.+.........+-++++.++
T Consensus 50 i~vv~wGk~A--E~~~~--~~kGs~V~VeGrL~trs~~s~~lvlhi~~~~ 95 (101)
T 3en2_A 50 IEALGAGKMA--SVLDR--IAPGTVLECVGFLARKHRSSKALVFHISGLE 95 (101)
T ss_dssp EEEEEETHHH--HHHTT--SCTTCEEEEEEEEEECC----CEEEEEEEEE
T ss_pred EEEEEEhHHH--HHHhh--cCCCCEEEEEEEEEeCcCCCCeeEEEEeccc
Confidence 7777765321 22445 8999999999999976555455777777654
No 109
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=55.71 E-value=73 Score=25.05 Aligned_cols=75 Identities=17% Similarity=0.265 Sum_probs=51.4
Q ss_pred CCCCEEEEEEEEe--eeecC--C-CeEEEEEEeC--cCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCC
Q 012426 27 RVGLMIVVAGWVR--TLRAQ--S-SVTFIEVNDG--SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK 99 (464)
Q Consensus 27 ~~~~~V~v~GwV~--~iR~~--g-~~~Fi~LrD~--sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~ 99 (464)
..++.++|.|-|. ++.+. + .+.|. |.|+ .+ ..|.|....-.+. +.+-|.-|.++|++..- .
T Consensus 6 ~~~~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~~~-~~v~V~Y~GilPD-------lFrEGqgVV~~G~l~~~---~ 73 (94)
T 2kct_A 6 DKLHTVRLFGTVAADGLTMLDGAPGVRFR-LEDKDNTS-KTVWVLYKGAVPD-------TFKPGVEVIIEGGLAPG---E 73 (94)
T ss_dssp CTTCCEEEEEEECSTTCEECTTSSEEEEE-EECSSCTT-CEEEEEEESCCCT-------TCCTTCEEEEEEEECTT---C
T ss_pred CCCCeEEEeeEEeCCeEEecCCCCEEEEE-EEcCCCCC-cEEEEEECCCCCc-------cccCCCeEEEEEEEeCC---C
Confidence 5688999999996 34332 3 57766 7886 12 4689888865432 38889999999999531 1
Q ss_pred ceEEEEEeeEEEEecCCC
Q 012426 100 QKVELKVNKIVLVGKSDP 117 (464)
Q Consensus 100 ~~~el~~~~i~vls~~~~ 117 (464)
+ .+.++ +||.||+.
T Consensus 74 g--~F~A~--evLaKh~e 87 (94)
T 2kct_A 74 D--TFKAR--TLMTKCPL 87 (94)
T ss_dssp S--EEEEE--EEEESSCC
T ss_pred C--EEEEe--EEEEeCCC
Confidence 1 35565 58999863
No 110
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=54.76 E-value=30 Score=32.47 Aligned_cols=81 Identities=9% Similarity=0.173 Sum_probs=48.6
Q ss_pred CEEEEEEEEee---eecC--C-CeEEEEEE-eCc-------CCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeC
Q 012426 30 LMIVVAGWVRT---LRAQ--S-SVTFIEVN-DGS-------CLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (464)
Q Consensus 30 ~~V~v~GwV~~---iR~~--g-~~~Fi~Lr-D~s-------g~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~ 95 (464)
..|.+.|+|.+ +|.. | .++-+.|. +.. ...-++|++-.+.. +.+.. |.+||.|.|+|.+...
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~A--e~~~~--l~KG~~V~V~G~l~~~ 204 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELA--EWASE--LRKGDGLLVIGRLVND 204 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHH--HHHTT--CCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHH--HHhhh--cCCCCEEEEEEEEEee
Confidence 57889999976 4543 3 23333332 211 00126666654321 11225 9999999999999764
Q ss_pred C----CCC--ceEEEEEeeEEEEec
Q 012426 96 Q----GSK--QKVELKVNKIVLVGK 114 (464)
Q Consensus 96 ~----~~~--~~~el~~~~i~vls~ 114 (464)
. .++ ..+||.+++|.+|..
T Consensus 205 ~~~~~dG~~~~~~ev~a~~i~~l~~ 229 (264)
T 2fxq_A 205 SWTSSSGERRFQTRVEALRLERPTR 229 (264)
T ss_dssp EEECTTSCEEEEEEEEEEEEECCCC
T ss_pred EEECCCCCEEEEEEEEEEEEEECcc
Confidence 2 222 247899999988865
No 111
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=52.17 E-value=21 Score=28.98 Aligned_cols=51 Identities=8% Similarity=0.221 Sum_probs=33.2
Q ss_pred eEEEEeCCccchhh-hhcCCCCCCcEEEEEEEEEeCC----CCC--ceEEEEEeeEEEEecC
Q 012426 61 MQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (464)
Q Consensus 61 iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~----~~~--~~~el~~~~i~vls~~ 115 (464)
++|++-.+.. +. .+. |..||.|.|+|.+.... .++ ..+||.+++|++|+..
T Consensus 52 ~~v~~wg~~A--e~~~~~--l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 52 VNCTLWRKTA--ENTALY--CQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEHHHH--HHHHHH--CCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEECHHH--HHHHHh--CCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 5666553311 11 245 99999999999998542 222 3489999999998764
No 112
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=48.29 E-value=69 Score=26.40 Aligned_cols=61 Identities=8% Similarity=0.174 Sum_probs=42.9
Q ss_pred EEEEeCcCCcceEE-EEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecC
Q 012426 50 IEVNDGSCLSNMQC-VMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 50 i~LrD~sg~~~iQv-v~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~ 115 (464)
+.|+||.. .+|. ++..... ..++.+.|..|++|.+.=....+-.. +.--|.+.+++|+.++
T Consensus 47 l~lSDG~~--~~~~~mLatqln--~~v~~g~l~~~sIirl~~y~~~~v~~-~k~vliIl~levl~~~ 108 (123)
T 2b29_A 47 LLMSDGLN--TLSSFMLATQLN--PLVEEEQLSSNCVCQIHRFIVNTLKD-GRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEECSSE--EEEEEEECGGGH--HHHHTTSSCTTCEEEEEEEEEEECSS-SCEEEEEEEEEEEECS
T ss_pred EEEECcch--heeeehhHHHHH--HHHhcCCccCCCEEEEEEEEEEEecC-CcEEEEEEeeEEeecc
Confidence 67999985 5998 8876542 22444569999999998765443320 2257888899999873
No 113
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=46.60 E-value=1.1e+02 Score=24.53 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=24.8
Q ss_pred CCCCcEEEEEEEEEe-CC----CC--CceEEEEEeeEEEEe
Q 012426 80 ITTGASIWIQGNVVP-SQ----GS--KQKVELKVNKIVLVG 113 (464)
Q Consensus 80 l~~g~~V~V~G~v~~-~~----~~--~~~~el~~~~i~vls 113 (464)
+..|+-|.|.|.+.. .. .+ -..+||.|.+|+.|.
T Consensus 66 ~~kG~~v~v~G~lrsy~~~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 66 LEVGTRVKIEGQLRSYNRKSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp CCTTCEEEEEEEEEEEECC--------EEEEEEEEEEEEEC
T ss_pred hcCCCEEEEEEEEEecceEECCCCCEEEEEEEEEEEEEEcc
Confidence 679999999999963 21 11 124899999999875
No 114
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=45.14 E-value=42 Score=27.81 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=35.2
Q ss_pred CCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc--h-hhh-hcCCCCCCcEEEEE
Q 012426 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y-DQV-KSGLITTGASIWIQ 89 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~--~-~~~-~~~~l~~g~~V~V~ 89 (464)
+|+ .+.|.|.++...| +||+|.++ ++.++..+... + ... .. +.+||.|.|.
T Consensus 7 vG~--iv~G~V~~i~~~G--~FV~l~~~-----~~Glihisel~~~~~~~~~~~--~~vGd~V~vk 61 (130)
T 2k4k_A 7 VGS--VYTGKVTGLQAYG--AFVALDEE-----TQGLVHISEVTHGFVKDINEH--LSVGDEVQVK 61 (130)
T ss_dssp TTC--EEEEEEEEEETTE--EEEEEETT-----EEEEEEGGGTSSSCCSCGGGT--CCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeCCe--EEEEECCC-----cEEEEEHHHCCcccccCcccc--CCCCCEEEEE
Confidence 455 4689999998887 99999653 66777654321 1 112 34 9999999876
No 115
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=45.06 E-value=33 Score=29.54 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCCCcEEEEEEEEEeCC----CC--CceEEEEEeeEEEEecC
Q 012426 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~el~~~~i~vls~~ 115 (464)
|.+|+.|.|+|.+.... .| ...++|.|++|.+|...
T Consensus 81 l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 81 LTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp CCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred CCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 99999999999998643 12 23489999999999754
No 116
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=44.25 E-value=1.5e+02 Score=25.20 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=56.3
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeee----------c---------CCCeEEEEEEeCcCCcceEEEEeCCccch
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR----------A---------QSSVTFIEVNDGSCLSNMQCVMTSDAEGY 72 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR----------~---------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~ 72 (464)
.+|+||... .+.|.|.|+|.++- . .++++=+.|-|.||. |-+.+..+
T Consensus 17 ~kI~dL~pg--------~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~--I~ftlW~e---- 82 (145)
T 1wjj_A 17 VKVEQLKPG--------TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC--ILFTARND---- 82 (145)
T ss_dssp CCSTTCCTT--------CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE--EEEEECTT----
T ss_pred eEHHHcCCC--------CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE--EEEEEecC----
Confidence 457777653 24478888886542 1 235777889999984 77766643
Q ss_pred hhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecC
Q 012426 73 DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 73 ~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~ 115 (464)
++.. |..||+|.+.+-..+--. +.++|.+.+..-+.+.
T Consensus 83 -~~~~--l~~Gd~v~i~na~v~~~~--G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 83 -QVDL--MKPGATVILRNSRIDMFK--GTMRLGVDKWGRIEAT 120 (145)
T ss_dssp -HHHH--TCTTCEEEEEEEEEEEET--TEEEEEECTTCCBCCC
T ss_pred -CcCc--CCCCCEEEEeccEEEeEC--CEEEEEECCCEEEEEC
Confidence 2345 899999999886554433 3489998765544443
No 117
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=43.20 E-value=27 Score=38.35 Aligned_cols=78 Identities=12% Similarity=0.190 Sum_probs=48.5
Q ss_pred CCCCEEEEEEEEeeeec--C--CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCC--CcEEEEEEEEEeCCCCCc
Q 012426 27 RVGLMIVVAGWVRTLRA--Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT--GASIWIQGNVVPSQGSKQ 100 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~--~--g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~--g~~V~V~G~v~~~~~~~~ 100 (464)
..|+.|+|.|.|.+... . ++..=+.+.|++|. +++++=.. .| ..+. +.+ |+.+.|.|++...++. +
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~f~~--~~-~~~~--~~~~~g~~~~~~G~~~~~~~~-~ 234 (780)
T 1gm5_A 163 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVH--VPLKWFNQ--DY-LQTY--LKQLTGKEVFVTGTVKSNAYT-G 234 (780)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCC--EEEEECSC--CT-THHH--HHTTCSSCEEEEEEECSCCTT-S
T ss_pred CCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCce--EEEEEECc--HH-HHhh--CccCCCCEEEEEEEEEEccCC-C
Confidence 45789999999987632 2 33444668899874 88876432 12 1133 667 9999999999763101 2
Q ss_pred eEEEEEeeEEEE
Q 012426 101 KVELKVNKIVLV 112 (464)
Q Consensus 101 ~~el~~~~i~vl 112 (464)
.+++.--++.+.
T Consensus 235 ~~~~~~p~~~~~ 246 (780)
T 1gm5_A 235 QYEIHNAEVTPK 246 (780)
T ss_dssp SCCEEEEEEECS
T ss_pred cEEEEcCEEeec
Confidence 245544445443
No 118
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=41.97 E-value=30 Score=29.93 Aligned_cols=51 Identities=12% Similarity=0.266 Sum_probs=33.8
Q ss_pred eEEEEeCCccchhh-hhcCCCCCCcEEEEEEEEEeC----CCCC--ceEEEEEeeEEEEecC
Q 012426 61 MQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPS----QGSK--QKVELKVNKIVLVGKS 115 (464)
Q Consensus 61 iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~----~~~~--~~~el~~~~i~vls~~ 115 (464)
+.|++-.+.. +. .+. |.+|+.|.|+|.+... +.++ ..+||.|++|.+|...
T Consensus 58 i~vv~wg~~A--e~~~~~--l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 58 HRIAFFNRLA--EIVGEY--LRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEETHHH--HHHHHH--CCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEhHHH--HHHHhh--cCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 5666654321 11 345 9999999999999754 2222 2489999999998764
No 119
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=41.79 E-value=23 Score=29.50 Aligned_cols=38 Identities=13% Similarity=0.454 Sum_probs=27.7
Q ss_pred hcCCCCCCcEEEEEEEEEeCC----CC--CceEEEEEeeEEEEecC
Q 012426 76 KSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (464)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~----~~--~~~~el~~~~i~vls~~ 115 (464)
+. |..||.|.|+|.+.... .| ...+||.|++|.+|++.
T Consensus 84 ~~--l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 84 QY--VKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp HH--CCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred hh--CCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 45 99999999999998542 12 13489999999998764
No 120
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=40.32 E-value=35 Score=28.53 Aligned_cols=51 Identities=12% Similarity=0.307 Sum_probs=34.3
Q ss_pred eEEEEeCCccchhh-hhcCCCCCCcEEEEEEEEEeCC----CCC--ceEEEEEeeEEEEecC
Q 012426 61 MQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (464)
Q Consensus 61 iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~----~~~--~~~el~~~~i~vls~~ 115 (464)
+.|++-.+.. +. .+. |.+||.|.|+|.+.... .++ ..+||.|++|..|...
T Consensus 51 ~~v~~wg~~A--e~~~~~--l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 51 IDARLFGRTA--EIANQY--LSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEHHHH--HHHHHH--CCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEcHHH--HHHHHh--CCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 5666553311 11 345 99999999999997642 222 2478999999998753
No 121
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=33.88 E-value=72 Score=27.97 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=33.6
Q ss_pred CCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhc--CCCCCCcEEEEE
Q 012426 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS--GLITTGASIWIQ 89 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~--~~l~~g~~V~V~ 89 (464)
+|+ .+.|.|.++...| +|++|.+..+ +..++..+......++. ..++.||.|.|.
T Consensus 15 ~G~--iv~G~V~~i~~fG--aFV~L~e~~g---veGLvhiSels~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 15 IDD--IVMVNVQQIAEMG--AYVKLLEYDN---IEGMILLSELSRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp TTC--EEEEEEEEEETTE--EEEEETTTTT---CEEEEECC--------CCCCCCCTTSEEEEE
T ss_pred CCC--EEEEEEEEEecce--EEEEEcCCCC---cEEEEEHHHcCCcccCCHHHcCCCCCEEEEE
Confidence 455 4789999999888 9999943333 56677654422211111 138889998876
No 122
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=33.17 E-value=59 Score=26.19 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=35.8
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchh----hh-hcCCCCCCcEEEEE
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD----QV-KSGLITTGASIWIQ 89 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~----~~-~~~~l~~g~~V~V~ 89 (464)
.+|+ .+.|.|.++...| +|++|.++ +..++..+...++ .. +. +..||.|.|.
T Consensus 29 ~~G~--~~~G~V~~v~~~G--~FV~l~~~-----~~Glvhisel~~~~~~~~~~~~--~~vGd~V~vk 85 (115)
T 2khi_A 29 PEGT--KLTGRVTNLTDYG--CFVEIEEG-----VEGLVHVSEMDWTNKNIHPSKV--VNVGDVVEVM 85 (115)
T ss_dssp CSSC--EEEEEEEEEETTE--EEEECSTT-----CEEEEETTSSSCSSTTCSSTTT--CCTTCEEEEE
T ss_pred CCCC--EEEEEEEEEECCE--EEEEECCC-----CEEEEEHHHCCccccccCcccE--ECCCCEEEEE
Confidence 4466 4889999999887 89999542 6677775542221 11 23 8999999876
No 123
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=32.67 E-value=61 Score=26.50 Aligned_cols=37 Identities=19% Similarity=0.480 Sum_probs=26.6
Q ss_pred hcCCCCCCcEEEEEEEEEeC----C--CCC--ceEEEEEe----eEEEEec
Q 012426 76 KSGLITTGASIWIQGNVVPS----Q--GSK--QKVELKVN----KIVLVGK 114 (464)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~----~--~~~--~~~el~~~----~i~vls~ 114 (464)
+. |.+||.|.|+|.+... + .++ ...||.|+ ++++|+.
T Consensus 71 ~~--l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 71 KY--LRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp HH--CCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred hh--cCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 45 9999999999999743 2 222 34888887 8888765
No 124
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=32.49 E-value=1.9e+02 Score=23.09 Aligned_cols=67 Identities=13% Similarity=0.284 Sum_probs=36.3
Q ss_pred CCEEEEEEEEeeeecC-----CCeEEEEEEeCcC-CcceEEEEeCCccch--hhhhcCCCCCCcEEEEEEEEEeCC
Q 012426 29 GLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSC-LSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~-----g~~~Fi~LrD~sg-~~~iQvv~~~~~~~~--~~~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
+..+++-|+|+.+-.. +=+.|...-|+.+ .++=|.++.--...+ ..+|. .|+.|++|.|+|+++..+
T Consensus 3 ~sn~vlvG~V~DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~-~lk~g~~v~V~GrLRm~p 77 (105)
T 4dka_C 3 GSNALMIGRIADVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKD-QVKLGSRVLVQGTLRMNR 77 (105)
T ss_dssp -CEEEEEEEEEEEEEEEETTEEEEEEEEEECC----CCEEEEEEEECC----------CCCTTCEEEEEEEEECCC
T ss_pred ccceEEEEEEEEeeecccccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHH-HHhCCCEEEEEeEEEeee
Confidence 5678999999999762 2244555555432 111222221101123 33553 599999999999998765
No 125
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=31.94 E-value=65 Score=28.51 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=33.4
Q ss_pred CCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchh---hhhcCCCCCCcEEEEE
Q 012426 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD---QVKSGLITTGASIWIQ 89 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~---~~~~~~l~~g~~V~V~ 89 (464)
+|+ .+.|.|.++...| +|++|.+..+ +...+.-+..... ..+. .++.||.|.|.
T Consensus 15 ~G~--iv~G~V~~I~~fG--aFV~L~e~~g---~eGLvhiSels~~~v~~~~~-~~~vGd~V~Vk 71 (182)
T 1kl9_A 15 VED--VVMVNVRSIAEMG--AYVSLLEYNN---IEGMILLSELSRRRIRSINK-LIRIGRNECVV 71 (182)
T ss_dssp TTC--EEEEEEEEECSSE--EEEEETTTTT---EEEEEEGGGC-------------CTTCEEEEE
T ss_pred CCC--EEEEEEEEEeccE--EEEEEccCCC---cEEEEEHHHCCCcccCCHHH-hcCCCCEEEEE
Confidence 455 4789999999988 9999964433 6777765432211 1211 38888888776
No 126
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=31.24 E-value=75 Score=25.57 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=42.8
Q ss_pred CEEEEEEEEee---eecC--C--CeEEEEEEeCc-----CCcceEEEEeCCccchhh-hhcCCCCCCcEEEEEEEEEeCC
Q 012426 30 LMIVVAGWVRT---LRAQ--S--SVTFIEVNDGS-----CLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 30 ~~V~v~GwV~~---iR~~--g--~~~Fi~LrD~s-----g~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
..|.+.|+|.+ +|-. | .++=+.|.-.+ ...-+.|++-.+.. +. .+. |.+||-|.|+|.+....
T Consensus 12 ~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~A--E~~~~y--l~KG~~V~VeGrL~~r~ 87 (108)
T 3koj_A 12 NSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVA--QELQDR--CRLNDEVVLEGRLRINS 87 (108)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHH--HHHHHH--CCTTCEEEEEEEEEEEC
T ss_pred ceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHH--HHHHHh--CCCCCEEEEEEEEEeee
Confidence 56888888864 3432 3 13322222111 01126666664321 11 245 99999999999998643
Q ss_pred ----CC--CceEEEEEeeEE
Q 012426 97 ----GS--KQKVELKVNKIV 110 (464)
Q Consensus 97 ----~~--~~~~el~~~~i~ 110 (464)
.+ ....||.|++|.
T Consensus 88 y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 88 LLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp --------CCEEEEEEEEEE
T ss_pred EECCCCCEEEEEEEEEEEEE
Confidence 11 234778887663
No 127
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=30.65 E-value=71 Score=25.80 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=39.8
Q ss_pred CCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc-cchh---hh-hcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYD---QV-KSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~-~~~~---~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
+|+ .+.|.|.++...| +|++|..+ + +..++..+. ..|. .. +. ++.||.|.|. |..-....+.+
T Consensus 21 ~G~--i~~G~V~~v~~fG--~fV~l~~~-~---~~~l~~~~~~~~~~~~~~~~~~--~~~Gd~V~vk--V~~vd~~~~~i 88 (119)
T 1wi5_A 21 PGM--LLTGTVSSLEDHG--YLVDIGVD-G---TRAFLPLLKAQEYIRQKNKGAK--LKVGQYLNCI--VEKVKGNGGVV 88 (119)
T ss_dssp TTC--EEEEEEEEECSSE--EEEECCCS-S---CEEEEEHHHHHHHHHHHSSSCC--CCTTCEEEEE--EEECCTTSCEE
T ss_pred CCC--EEEEEEEEEeCce--EEEEECCC-C---eEEEEEEecccccccccCccCE--eCCCCEEEEE--EEEEeCCCCEE
Confidence 455 4789999999988 99999622 2 445555443 1221 12 24 9999999876 44433222334
Q ss_pred EEEE
Q 012426 103 ELKV 106 (464)
Q Consensus 103 el~~ 106 (464)
.|..
T Consensus 89 ~Lsl 92 (119)
T 1wi5_A 89 SLSV 92 (119)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 4443
No 128
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=30.31 E-value=2.9e+02 Score=24.47 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=47.5
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeee----c-CCC---eEEEEEEeCcC---CcceEEEEeCCccchhhhhcCCC
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR----A-QSS---VTFIEVNDGSC---LSNMQCVMTSDAEGYDQVKSGLI 80 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR----~-~g~---~~Fi~LrD~sg---~~~iQvv~~~~~~~~~~~~~~~l 80 (464)
+++++++.. ...++.|.|.|-|...+ . .|+ .+-+.|.|.|. ...|.|.+=... .+.+-. +
T Consensus 30 ~~~r~~l~~-----~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~--~e~LP~--V 100 (187)
T 1qzg_A 30 QSIRSSQEL-----QKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQ--GNDLPV--I 100 (187)
T ss_dssp ECHHHHTSC-----CSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESS--SSCSCC--C
T ss_pred EEHHHHHhh-----ccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCC--hhhCCC--C
Confidence 455565543 35688899999996653 2 344 67788999771 123555442221 112333 5
Q ss_pred -CCCcEEEEEEEEEeCCCC
Q 012426 81 -TTGASIWIQGNVVPSQGS 98 (464)
Q Consensus 81 -~~g~~V~V~G~v~~~~~~ 98 (464)
..||+|.+.....+.-.+
T Consensus 101 ~~~GDIIlL~rvkiq~~~g 119 (187)
T 1qzg_A 101 KQVGQPLLLHQITLRSYRD 119 (187)
T ss_dssp CSTTCEEEEEEEEEEEETT
T ss_pred CCCCCEEEEEEEEEEEECC
Confidence 789999999877765443
No 129
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.86 E-value=40 Score=27.56 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=33.9
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc---hhhh-hcCCCCCCcEEEEE
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQV-KSGLITTGASIWIQ 89 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~---~~~~-~~~~l~~g~~V~V~ 89 (464)
.+|+ .+.|.|.++...| +|++| ++.+ +..++...... ++.. +. +..||.|.|.
T Consensus 21 ~vG~--iv~G~V~~I~~fG--aFV~l-~g~~---~~Glvhisel~~~~~~~~~~~--~~~Gd~V~Vk 77 (119)
T 2cqo_A 21 ALYT--IFQGEVAMVTDYG--AFIKI-PGCR---KQGLVHRTHMSSCRVDKPSEI--VDVGDKVWVK 77 (119)
T ss_dssp CTTC--EEEEEEEEEETTE--EEEEC-TTCS---SCEEEEHHHHCSSCCSCHHHH--CCTTCEEEEE
T ss_pred CCCC--EEEEEEEEEeCce--EEEEE-CCCc---EEEEEEHHHCCcccccChhhc--CCCCCEEEEE
Confidence 3455 4789999999887 99999 4421 34555533211 1112 34 8999999876
No 130
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=25.24 E-value=2.1e+02 Score=21.76 Aligned_cols=53 Identities=15% Similarity=0.296 Sum_probs=35.0
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCC-ccc---hhhhhcCCCCCCcEEEEE
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-AEG---YDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~-~~~---~~~~~~~~l~~g~~V~V~ 89 (464)
.+|+ .+.|.|. +...| +|++|.+..+ +...+.-+ ... +...+. .+ .||.|.|.
T Consensus 10 ~vG~--~~~G~V~-v~~fG--~FVel~~~~~---~eGLvhis~el~~~~~~~~~~-~~-~Gd~V~Vk 66 (88)
T 1luz_A 10 NAGD--VIKGRVY-EKDYA--LYIYLFDYPH---FEAILAESVKMHMDRYVEYRD-KL-VGKTVKVK 66 (88)
T ss_dssp CTTC--EEEEEEE-EETTE--EEEEETTCTT---SEEEEGGGSSCCHHHHHHHHH-HH-TTCEEEEE
T ss_pred CCCC--EEEEEEE-EEccE--EEEEECCCCC---eEEEEEeeHHhCcccccCHhH-Ee-CCCEEEEE
Confidence 4555 4789999 99988 9999955222 56777655 422 222322 16 99999987
No 131
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=25.19 E-value=20 Score=35.00 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=36.1
Q ss_pred eeeEEEee-CC--ccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhhh---HhhhhcCCCCCCC
Q 012426 398 VAAMDMLV-PR--IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSG---LVFILIKVTNFLN 463 (464)
Q Consensus 398 ~~~fdl~~-~G--igEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~g---L~mll~~~~~I~~ 463 (464)
....|+++ .| + ||. |+-..| |+.+ +..|++++.|.- +.+|+| |+|+..|.++||+
T Consensus 254 s~eadI~~~~G~w~-EIg-g~G~VH-P~Vl----~~~gid~~~~~g----~AFglgleRlaml~~~i~diR~ 314 (327)
T 3pco_A 254 SAEVDVMGKNGKWL-EVL-GCGMVH-PNVL----RNVGIDPEVYSG----FAFGMGMERLTMLRYGVTDLRS 314 (327)
T ss_dssp EEEEEEECSSSCEE-EEE-EEEEEC-HHHH----HTTTCCTTTCEE----EEEEEEHHHHHHHHHTCSCGGG
T ss_pred cEEEEEEEeCCCeE-EEE-EEEEEC-HHHH----HHcCCCCccceE----EEEEechHHHHHHHcCCcHHHH
Confidence 34567777 34 2 654 444444 5544 457888764432 356887 9999999999986
No 132
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=22.77 E-value=76 Score=28.42 Aligned_cols=81 Identities=11% Similarity=0.246 Sum_probs=45.3
Q ss_pred CEEEEEEEEee---eecC--C-CeEEEEEE-eC------cCC-----cceEEEEeCC-ccchhh-hhcCCCCCCcEEEEE
Q 012426 30 LMIVVAGWVRT---LRAQ--S-SVTFIEVN-DG------SCL-----SNMQCVMTSD-AEGYDQ-VKSGLITTGASIWIQ 89 (464)
Q Consensus 30 ~~V~v~GwV~~---iR~~--g-~~~Fi~Lr-D~------sg~-----~~iQvv~~~~-~~~~~~-~~~~~l~~g~~V~V~ 89 (464)
..|+|.|+|.+ +|.. | .++-+.|. +. +|. .-+.|++-.+ .. +. .+. |.+|+.|.|+
T Consensus 27 NkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lA--e~~~~y--L~KGs~V~Ve 102 (193)
T 3pgz_A 27 NKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLV--KVVEQY--LKKGSKIYIE 102 (193)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHH--HHHHHH--CCTTCEEEEE
T ss_pred CEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHH--HHHHhh--cCCCCEEEEE
Confidence 56899999976 5543 3 23333222 11 110 1255655432 11 11 245 9999999999
Q ss_pred EEEEeCC----CCC--ceEEEEEe----eEEEEec
Q 012426 90 GNVVPSQ----GSK--QKVELKVN----KIVLVGK 114 (464)
Q Consensus 90 G~v~~~~----~~~--~~~el~~~----~i~vls~ 114 (464)
|.+.... .++ ...||.|+ +|++|..
T Consensus 103 GrL~trswedkdG~kr~~tEVva~~~~~~i~fL~s 137 (193)
T 3pgz_A 103 GQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDG 137 (193)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC-
T ss_pred EEEEEEEeECCCCCEEEEEEEEEEeccCceEECcC
Confidence 9997542 222 34778887 5777765
No 133
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=22.65 E-value=1.7e+02 Score=27.14 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=23.0
Q ss_pred CCCCcEEEEEEEEEeCCCC--------CceEEEEEeeEEEEec
Q 012426 80 ITTGASIWIQGNVVPSQGS--------KQKVELKVNKIVLVGK 114 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~~~--------~~~~el~~~~i~vls~ 114 (464)
+.+||-|.|+|.+...+.. ....-|.|.+|+.+++
T Consensus 225 ~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 225 ARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp SCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC--
T ss_pred ccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEecc
Confidence 8999999999998764421 1134566667766653
No 134
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.45 E-value=1.6e+02 Score=22.99 Aligned_cols=55 Identities=9% Similarity=0.175 Sum_probs=35.6
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc-c-h--hh-hhcCCCCCCcEEEEE
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-G-Y--DQ-VKSGLITTGASIWIQ 89 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~-~-~--~~-~~~~~l~~g~~V~V~ 89 (464)
.+|+ .+.|.|.++...| +|++|.+-.. .+..++..+.. . + +. -+. ++.||.|.|.
T Consensus 11 ~vG~--i~~G~V~~v~~fG--~FV~l~~~~~--~~~Glvhisel~~~~~~~~~~~~--~~~Gd~V~Vk 70 (103)
T 2eqs_A 11 TIGD--IYNGKVTSIMQFG--CFVQLEGLRK--RWEGLVHISELRREGRVANVADV--VSKGQRVKVK 70 (103)
T ss_dssp CTTC--EEEEEEEEECSSC--EEEEECSSSS--CCEEEECGGGTSSSSCCCCHHHH--CCTTCEEEEE
T ss_pred CCCC--EEEEEEEEEeccE--EEEEEcCCCC--CeEEEEEHHHCCCCcccCCcccE--eCCCCEEEEE
Confidence 3455 4789999999988 9999976210 25667664432 1 1 11 134 8999999876
No 135
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=22.22 E-value=1.3e+02 Score=26.22 Aligned_cols=82 Identities=10% Similarity=0.226 Sum_probs=46.2
Q ss_pred CEEEEEEEEee---eecC--C-CeEEEEEE-eC------cC-----CcceEEEEeCC-ccchhh-hhcCCCCCCcEEEEE
Q 012426 30 LMIVVAGWVRT---LRAQ--S-SVTFIEVN-DG------SC-----LSNMQCVMTSD-AEGYDQ-VKSGLITTGASIWIQ 89 (464)
Q Consensus 30 ~~V~v~GwV~~---iR~~--g-~~~Fi~Lr-D~------sg-----~~~iQvv~~~~-~~~~~~-~~~~~l~~g~~V~V~ 89 (464)
..|+|.|+|.+ +|.. | .++-+.|. +. +| ..-+.|++-.+ .. +. .+. |.+|+.|.|+
T Consensus 24 NkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lA--e~~~~~--l~KG~~V~Ve 99 (169)
T 3lgj_A 24 NKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFA--KIALQY--LHKGSKVYIE 99 (169)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHH--HHHHHH--CCTTCEEEEE
T ss_pred eEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHH--HHHHHh--CCCCCEEEEE
Confidence 56899999975 5543 3 23322221 11 01 11255665543 11 11 245 9999999999
Q ss_pred EEEEeCC----CC--CceEEEEE----eeEEEEecC
Q 012426 90 GNVVPSQ----GS--KQKVELKV----NKIVLVGKS 115 (464)
Q Consensus 90 G~v~~~~----~~--~~~~el~~----~~i~vls~~ 115 (464)
|.+.... .+ ...+||.| .+|++|+..
T Consensus 100 GrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 100 GKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 9998652 12 13477877 578888653
No 136
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=21.82 E-value=1e+02 Score=29.54 Aligned_cols=81 Identities=15% Similarity=0.312 Sum_probs=47.8
Q ss_pred CEEEEEEEEee---eecC--C-CeEEEEEE------eCcC-----CcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEE
Q 012426 30 LMIVVAGWVRT---LRAQ--S-SVTFIEVN------DGSC-----LSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNV 92 (464)
Q Consensus 30 ~~V~v~GwV~~---iR~~--g-~~~Fi~Lr------D~sg-----~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v 92 (464)
..|.|.|+|.+ +|.. | .++-+.|. |..| ..-+.|++-.+. -+.+.. |.+||.|.|+|.+
T Consensus 130 N~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~--Ae~~~~--l~KG~~V~V~GrL 205 (301)
T 1se8_A 130 NEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDL--AENMKE--LRKGDPVMIMGRL 205 (301)
T ss_dssp EEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHH--HHHHTT--CCTTCEEEEEEEE
T ss_pred eEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHH--HHHHHh--cCCCCEEEEEEEE
Confidence 45789999976 4543 3 23322232 1111 012555555431 122444 9999999999999
Q ss_pred EeCC----CC--CceEEEEEeeEEEEec
Q 012426 93 VPSQ----GS--KQKVELKVNKIVLVGK 114 (464)
Q Consensus 93 ~~~~----~~--~~~~el~~~~i~vls~ 114 (464)
.... .+ ...++|.+++|.+|..
T Consensus 206 ~~~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 206 VNEGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EEEECC------CEEEEEEEEEEEECCC
T ss_pred eeeeEECCCCcEEEEEEEEEEEEEEecc
Confidence 7642 12 1258999999999865
No 137
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=21.49 E-value=1.3e+02 Score=26.95 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=29.9
Q ss_pred eEEEEeCCccchhh-hhcCCCCCCcEEEEEEEEEeCCC------CCceEEEEEeeEEE
Q 012426 61 MQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQG------SKQKVELKVNKIVL 111 (464)
Q Consensus 61 iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~------~~~~~el~~~~i~v 111 (464)
+.|++-.+.. +. .+. |.+||.|.|+|.+....= +...+||.|++|..
T Consensus 55 i~VvawgklA--E~v~~~--L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 55 LTCSVWRQAA--ENVAES--LQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEETHHH--HHHHHH--CCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEEhHHH--HHHHHh--cCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 5666654321 11 346 999999999999986431 12347888877753
No 138
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=20.78 E-value=2.2e+02 Score=24.68 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=34.3
Q ss_pred EEEEEEeeeecCCCeEEEEEEeC---cC--CcceEEEEeCCccc---hhhh-hcCCCCCCcEEEEE
Q 012426 33 VVAGWVRTLRAQSSVTFIEVNDG---SC--LSNMQCVMTSDAEG---YDQV-KSGLITTGASIWIQ 89 (464)
Q Consensus 33 ~v~GwV~~iR~~g~~~Fi~LrD~---sg--~~~iQvv~~~~~~~---~~~~-~~~~l~~g~~V~V~ 89 (464)
.|.|+|.++...+ +|++|..- .. ...++.++...... .+.+ .. +..||.|.+.
T Consensus 60 iV~G~V~~V~~~g--a~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~--~~~GD~V~ak 121 (179)
T 3m7n_A 60 VVLGRVVDLRNSI--ALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEA--VGYLDILKAR 121 (179)
T ss_dssp EEEEEEEEECSSE--EEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGT--CCTTCEEEEE
T ss_pred EEEEEEEEEeCCc--EEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhc--CCCCCEEEEE
Confidence 5679999998755 99999761 10 01377787744311 1223 34 9999999876
Done!