RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012426
(464 letters)
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 578 bits (1492), Expect = 0.0
Identities = 134/446 (30%), Positives = 209/446 (46%), Gaps = 58/446 (13%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD- 68
+K+ +VK + G + +AGWV T F+ + D + + +Q V+ +
Sbjct: 3 EKVYCQEVKP------ELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNV 54
Query: 69 --AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKR 125
E +++ K + +S+ ++G V + + E+ V K+ ++ P ++
Sbjct: 55 VGEETFEKAKK--LGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQ 112
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
S E L HL RT A+ +V+ L A ++ ++G+ + PI+ EG
Sbjct: 113 ASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGAT 172
Query: 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245
F + +F+K A+L+ S QL E L
Sbjct: 173 LFKL------------------------------KYFDKYAYLSQSAQLYLEAAIFGLEK 202
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305
V++ P+FRAE S T RHL EFW +E E A+ DL D M + Y+V+ L+ K+++
Sbjct: 203 VWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEI 262
Query: 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 365
+ F + E F ++SY +AI++L E WG DL ++ ER L
Sbjct: 263 EMFRDDLTT------LKNTEPPFPRISYDEAIDILQSKGVNVE----WGDDLGADEERVL 312
Query: 366 TEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPR-IGELIGGSQREERLEY 423
TEE F P V YPK IKAFYM+++ +D R V A DML P GE+IGGSQRE+ +
Sbjct: 313 TEE-FDR-PFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDK 370
Query: 424 LEGRLDELKLNRDSYWWYLDLRHYGS 449
L R+ E ++ Y WYLDLR YGS
Sbjct: 371 LLNRILEEGMDPKDYEWYLDLRRYGS 396
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 571 bits (1474), Expect = 0.0
Identities = 110/453 (24%), Positives = 187/453 (41%), Gaps = 63/453 (13%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
I D G ++ GW +R ++ F+E+ DGS QCV+
Sbjct: 17 PIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFG 67
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ--------KVELKVNKIVLVGKSDP-S 118
+ L T S+ I G + G +E++V + ++G+S
Sbjct: 68 KELCEPEKVKLL-TRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDL 126
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
I K S H+ R+ V ++R+ + + K++ +N F I P I +
Sbjct: 127 ENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKT 186
Query: 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238
CEG F + +F +PA+LT S QL E+
Sbjct: 187 QCEGGSTLFKL------------------------------QYFNEPAYLTQSSQLYLES 216
Query: 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 298
+L + ++RAE S T RHLAE+ +E EL F +D + + V+ ++
Sbjct: 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVM 276
Query: 299 DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLVKWGCDL 357
+ + N ++ + R F +++Y DAI+ + ++G D+
Sbjct: 277 AVHGDKIRKMNPHLK---------LPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDI 327
Query: 358 QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ-NDDGRTVAAMDMLVPRIGELIGGSQ 416
+ ER +T+E GCP+ + +P ++KAFYM + ++D+L+P +GE++GGS
Sbjct: 328 SEKPERQMTDEI--GCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSM 385
Query: 417 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGS 449
R + L G LN D Y+WY R YGS
Sbjct: 386 RIWNYDELMGAYKANGLNPDPYYWYTQQRKYGS 418
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 569 bits (1470), Expect = 0.0
Identities = 105/436 (24%), Positives = 189/436 (43%), Gaps = 52/436 (11%)
Query: 23 EGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+ + + + GW+ +R Q S+ F + DG+ +Q ++ + +
Sbjct: 5 DLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDALT--VN 60
Query: 82 TGASIWIQGNVVPSQGSKQK---VELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAH 136
T ++ I G + K+ EL + ++G + P + + S + + H
Sbjct: 61 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 120
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS 196
L R A+ R+R A A + F G++ ++ P + + EG F +
Sbjct: 121 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL------- 173
Query: 197 REAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAE 256
D+F + +FLT S QL ET L +V+ ++RAE
Sbjct: 174 -----------------------DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAE 210
Query: 257 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 316
S T RHLAE+ +E E F L D M + V +L + + I
Sbjct: 211 KSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADE--EAKKLLEHINPKF 268
Query: 317 IDRLSTVAERDFVQLSYTDAIELLIKA--KKKFEFLVKWGCDLQSEHERYLTEEAFGGCP 374
ER F+++ Y DAI+ L + + +F +G D+ ER++T+ P
Sbjct: 269 -----QPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI--NKP 321
Query: 375 VIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKL 433
++++ +P EIKAFYM+++ D ++D+L+P +GE++GGS R + + L +++
Sbjct: 322 ILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEI 381
Query: 434 NRDSYWWYLDLRHYGS 449
+ Y+WYLD R YG+
Sbjct: 382 DPKPYYWYLDQRLYGT 397
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 482 bits (1242), Expect = e-169
Identities = 110/444 (24%), Positives = 184/444 (41%), Gaps = 57/444 (12%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+ I DV + G ++ AGWV LR FI + D + L Q V+ +
Sbjct: 2 YRSHFIADVTP------EYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKN 53
Query: 69 AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKR 125
+ + + +T + I ++G V + + + +EL +I L+ K+ P+ K +
Sbjct: 54 SSAFGISQE--LTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVK 111
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
+ + L R AV ++++ A + + GFI I +P I AS EG +
Sbjct: 112 ADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQ 171
Query: 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245
F V +F K AFL S QL E A +
Sbjct: 172 LFPV------------------------------IYFGKEAFLAQSPQLYKELMAGVVER 201
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305
V+ P +RAE S+T HLAEF ++ E+AFAD D M L +V+ I + KE++
Sbjct: 202 VFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEEL 261
Query: 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 365
N + + +L YT+AIE+L + +G D+ + R L
Sbjct: 262 KILNYEPPE---------VKIPIKRLKYTEAIEILRSKGYNIK----FGDDIGTPELRIL 308
Query: 366 TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 425
EE + D+P + + FY + + ++ L+ + E++ GS R + E LE
Sbjct: 309 NEE-LKEDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLE 367
Query: 426 GRLDELKLNRDSYWWYLDLRHYGS 449
L + L +S+ ++L YG
Sbjct: 368 EALKKKGLKPESFEFFLKWFDYGM 391
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 478 bits (1232), Expect = e-167
Identities = 112/434 (25%), Positives = 190/434 (43%), Gaps = 56/434 (12%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGA 84
+ G + VAGWV ++ + F+ + D + +Q + K + +
Sbjct: 13 ELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSED 70
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKRVSREFLRTKAHLRPRT 141
+ ++G V + +K E+ KIV++ +++ P+ K + + + R
Sbjct: 71 VVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRR 130
Query: 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAE 201
A+ ++R+++ A FF ENGFI I +P I A+ EG E F +
Sbjct: 131 PEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM------------ 178
Query: 202 SPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNT 260
+FE+ AFL S QL + A+ L VY P FRAE NT
Sbjct: 179 ------------------KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNT 220
Query: 261 SRHLAEFWMIEPELAF-ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319
+RHL E W I+ E+AF D ++ M+ + + + Y+ ++ +++D N +E+
Sbjct: 221 TRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEP---- 276
Query: 320 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVI 376
+ F ++SY A+E+L K+ WG D+ +E ER L + E
Sbjct: 277 -----KLPFPRVSYDKALEILGDLGKEIP----WGEDIDTEGERLLGKYMMENENAPLYF 327
Query: 377 VSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 435
+ YP E K FY M+ ++ A D+ R E+ G QRE R + L ++ E LN
Sbjct: 328 LYQYPSEAKPFYIMKYDNKPEICRAFDLEY-RGVEISSGGQREHRHDILVEQIKEKGLNP 386
Query: 436 DSYWWYLDLRHYGS 449
+S+ +YL YG
Sbjct: 387 ESFEFYLKAFRYGM 400
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 438 bits (1128), Expect = e-152
Identities = 96/447 (21%), Positives = 180/447 (40%), Gaps = 72/447 (16%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
++ + D+K VG + + G++ R + F+ + D S + +Q V
Sbjct: 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLKL 52
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ----KKRV 126
+++ ++G VV + + +E++ ++ ++ + P++ + R
Sbjct: 53 ---------PLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRA 103
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
+ + L ++ R A +V+ AL ++ F I +P + + EG
Sbjct: 104 NPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGL 163
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246
F V D+FEK A+L S QL + V
Sbjct: 164 FGV------------------------------DYFEKRAYLAQSPQLYKQIMVGVFERV 193
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACATAYLQYVVRYILDNCKEDM 305
Y P +R E +TSRHL E+ ++ E+ F AD +D M A L ++ L+ +++
Sbjct: 194 YEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEI 253
Query: 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 365
+D +L++ +A +L K++ G DL E ER L
Sbjct: 254 RLLGATWP---------SFPQDIPRLTHAEAKRIL---KEELG--YPVGQDLSEEAERLL 299
Query: 366 TE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE 422
E E +G + V+ YP+ ++ FY +DG T + D+L + E+ G QR R E
Sbjct: 300 GEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTT-RSFDLLFRGL-EITSGGQRIHRYE 357
Query: 423 YLEGRLDELKLNRDSYWWYLDLRHYGS 449
L L ++ +++ YL++ YG
Sbjct: 358 ELLESLKAKGMDPEAFHGYLEVFKYGM 384
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 400 bits (1031), Expect = e-139
Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 70/319 (21%)
Query: 135 AHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP 194
+ + ++ + FF + GF W+ II+
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPIT--------------- 46
Query: 195 SSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTF 253
+G+ + + LT S L+ + A L ++ P
Sbjct: 47 --------DPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNI 98
Query: 254 RAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTW 311
R E+ + RH EF ++ E+ A ++D M + + R + +
Sbjct: 99 RLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK-- 156
Query: 312 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFG 371
F Y++ +E ++G D ++ E
Sbjct: 157 ---------------RFEVFEYSEVLE-------------EFGSDEKASQEM-------- 180
Query: 372 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDE 430
P + + P+E FY R+ D D+++P GE+ G +RE E + ++ +
Sbjct: 181 EEPFWIINIPRE---FYDREVDG--FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRK 235
Query: 431 LKLNRDSYWWYLDLRHYGS 449
LN DS+ YL++ G
Sbjct: 236 AGLNEDSFRPYLEIAKAGK 254
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 398 bits (1024), Expect = e-135
Identities = 93/473 (19%), Positives = 183/473 (38%), Gaps = 76/473 (16%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q ++ F+ + + L +Q ++ +
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKA 73
Query: 68 DAEGY---DQVKS-GLITTGASIWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPS 118
+ EG + VK G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 74 NKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEA 133
Query: 119 YPIQKKRVSR---------------EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163
PI + SR + + RT T A+ R++ + ++
Sbjct: 134 LPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLA 193
Query: 164 ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223
F + +P + + EG F V +F+
Sbjct: 194 TKKFTEVHTPKLLGAPSEGGSSVFEV------------------------------TYFK 223
Query: 224 KPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD 282
A+L S Q N + A VY GP FRAENSNT RH+ EF ++ E+AF + +
Sbjct: 224 GKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHE 283
Query: 283 -MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLI 341
+ + ++ + +++ ++ + V+L+Y + IE+L
Sbjct: 284 VLDTLSELFVFIFSELPKRFAHEIELVRKQYP---VEEFKLPKDGKMVRLTYKEGIEMLR 340
Query: 342 KAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 398
A K+ DL +E+E++L + + + I+ +P EI+ FY +
Sbjct: 341 AAGKEIG----DFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKY 396
Query: 399 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS--YWWYLDLRHYGS 449
+ R E++ G+QR L+ R+ L+ + Y D YG
Sbjct: 397 SNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGC 449
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 343 bits (882), Expect = e-113
Identities = 75/366 (20%), Positives = 133/366 (36%), Gaps = 47/366 (12%)
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVAR 149
+ K + + + + + +VS++ L RT T A+ R
Sbjct: 186 AKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFR 245
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK 209
+++A +F F+ I +P + EG F V
Sbjct: 246 IQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV-------------------- 285
Query: 210 TKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFW 268
+F++ A+L S QL + V+ GP FRAENSNT RHL EF
Sbjct: 286 ----------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFE 335
Query: 269 MIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERD 327
++ E+ + + + ++ I +++ + R
Sbjct: 336 GLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPF------EDLIYRP 389
Query: 328 FVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEI 384
F++L+Y +AIE+L + + D + E L E + I+ +P I
Sbjct: 390 FLRLTYKEAIEMLRASGETIG----DYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAI 445
Query: 385 KAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 443
+ FY M DD + D+ V E+ G+QR E+L R E ++ + Y++
Sbjct: 446 RPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIE 504
Query: 444 LRHYGS 449
+GS
Sbjct: 505 SFRFGS 510
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 2e-06
Identities = 75/453 (16%), Positives = 132/453 (29%), Gaps = 139/453 (30%)
Query: 49 FIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS--IWI----QGNVVPSQGSKQKV 102
F++ D + +M + S E + S +G W Q +V ++ V
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV-----QKFV 83
Query: 103 E--LKVNKIVLVGK-----SDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVAR------ 149
E L++N L+ PS + R+ L + + N V+R
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLK 139
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK 209
+R AL + + I + G+G+ T + A + + +
Sbjct: 140 LRQAL-----LELRPAKNVLIDGVL-------GSGK----TWV------ALDVCLSYKVQ 177
Query: 210 TK-DGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYT-FGPTFRAENSNTSRHLAEF 267
K D I W L + + ET L + P + + + ++S
Sbjct: 178 CKMDFKIFW----------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN----- 222
Query: 268 WMIEPELAFADLKDDMACATAYLQYVVRY-----ILDNC--KEDMDFFN-------TWIE 313
+L ++ ++ L Y +L N + + FN T
Sbjct: 223 ----IKLRIHSIQAELR----RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 314 KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGG 372
K + D LS +S L + K L+K+ C Q L E
Sbjct: 275 KQVTDFLSAATTT---HISLDHHSMTLTPDEVK-SLLLKYLDCRPQD-----LPREVLTT 325
Query: 373 CPVIVS-------DYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 425
P +S D + N D ++ +I S L LE
Sbjct: 326 NPRRLSIIAESIRDGLATWD-NWKHVNCD------------KLTTIIESS-----LNVLE 367
Query: 426 -----GRLDELKLNRDS----------YWWYLD 443
D L + S W+ +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Score = 46.4 bits (109), Expect = 2e-05
Identities = 71/469 (15%), Positives = 136/469 (28%), Gaps = 147/469 (31%)
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE----FLRTKA-HLRPRTNTF---- 144
PS ++ +E + +++ +D K VSR LR LRP N
Sbjct: 105 PSMMTRMYIE-QRDRL----YNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 145 -GA-----VARVRNALAYATHKFFQENGFIWIS-SPIITASDCEGAGEQFCVTTLIPSSR 197
G+ V L+Y + W++ + ++ + P+
Sbjct: 159 LGSGKTWVALDV--CLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWT 214
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAF---LTVSGQLNAETYATALSNVY------T 248
++ I + + + + L V L NV
Sbjct: 215 SRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLV------------LLNVQNAKAWNA 261
Query: 249 FGP------TFR------AENSNTSRHLA---EFWMIEPE-----LA-FADLKDDM---- 283
F T R ++ T+ H++ + P+ L + D +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 284 ACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA 343
T + I ++ ++ + ++ W + D+L+T+ E L + E
Sbjct: 322 VLTTNPR--RLSIIAESIRDGLATWDNW-KHVNCDKLTTIIESSLNVL---EPAEY---- 371
Query: 344 KKKFEFL------VK---------WGCDLQSEHERYLTEEAFGGCPVIVSDYPKE----I 384
+K F+ L W D+ + + +V PKE I
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIW-FDVIKSDVMVVVNKLHKYS--LVEKQPKESTISI 428
Query: 385 KAFYMRQNDDGRTVAAM-----------------DMLVPR--------IGELIGGSQREE 419
+ Y+ A+ D++ P IG + + E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 420 RLE-----YLEGRLDELKLNRDSYWWY---------LDLRHYGSGLVFI 454
R+ +L+ R E K+ DS W L+ Y +I
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---YI 534
Score = 32.1 bits (72), Expect = 0.51
Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 36/147 (24%)
Query: 327 DF----VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 382
DF Q Y D + + A F K D+Q + L++E
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVD-NFDCK---DVQDMPKSILSKE-------------- 49
Query: 383 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQR--EERLE----YLEGRL-DELK--- 432
EI M ++ T+ L+ + E++ Q+ EE L +L + E +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMV---QKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 433 LNRDSYWWYLDLRHYGSGLVFILIKVT 459
+ Y D R Y VF V+
Sbjct: 107 MMTRMYIEQRD-RLYNDNQVFAKYNVS 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 2e-05
Identities = 60/377 (15%), Positives = 106/377 (28%), Gaps = 118/377 (31%)
Query: 111 LVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-RNALAYATHKFFQENGFIW 169
+P+ P + V + FL + L + G +V L + + + N
Sbjct: 48 FAADDEPTTPAE--LVGK-FLGYVSSLVEPSKV-GQFDQVLNLCLTEFENCYLEGND--- 100
Query: 170 ISSPIITASDCEGAGEQFCVTTLIPS---SREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226
I + + E LI + +R A+ P D K+ L +
Sbjct: 101 IHA-LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD--KKSNSALFRAVGE--GNAQ 155
Query: 227 FLTV-SGQLNAETYATALSNVY-TFGPTFRAENSNTSRHLAEF----------------- 267
+ + GQ N + Y L ++Y T+ ++ L+E
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 268 --WMIEPELAFADLKDDMACA---------TAYLQYVVRYILDNCK-------EDMDFFN 309
W+ P D + YVV K E +
Sbjct: 216 LEWLENPSNTPDK--DYLLSIPISCPLIGVIQLAHYVV-----TAKLLGFTPGELRSYLK 268
Query: 310 --TWIEKGIIDRLSTVA------ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361
T +G++ + VA F AI +L F + G
Sbjct: 269 GATGHSQGLV---TAVAIAETDSWESFFVSVR-KAITVL--------FFI--GVRCY--- 311
Query: 362 ERYLTEEAFGGC---PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQRE 418
EA+ P I+ D +N++G ML I +E
Sbjct: 312 ------EAYPNTSLPPSILEDS---------LENNEG---VPSPMLS------ISNLTQE 347
Query: 419 ERLEYLEGRLDELKLNR 435
+ ++ ++ K N
Sbjct: 348 Q----VQDYVN--KTNS 358
Score = 45.4 bits (107), Expect = 3e-05
Identities = 40/262 (15%), Positives = 75/262 (28%), Gaps = 101/262 (38%)
Query: 223 EKPAFLTV-----SGQLNAETYATALSNVYTFG-----PTFRAENSNTSRHLAEFWMIEP 272
P LT+ G+ E Y+ + G F+ N +++
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST----------- 1715
Query: 273 ELAFADLKDDMACATAYLQ---YVVRYILDNCKEDMDFFNTWIEKGIIDR---------- 319
F K ++ AT + Q ++ F KG+I
Sbjct: 1716 SYTFRSEKGLLS-ATQFTQPALTLMEKAA---------FEDLKSKGLIPADATFAGHSLG 1765
Query: 320 ----LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER-YLTEEAFGGCP 374
L+++A+ V +S +E++ R + A
Sbjct: 1766 EYAALASLAD---V-MSIESLVEVV--------------------FYRGMTMQVAVPRDE 1801
Query: 375 VIVSDYPKEIKAFYMRQNDDGRTVAAMDM-----LVPRIGELIG-----------GSQ-- 416
+ S+Y M + GR A+ +V R+G+ G Q
Sbjct: 1802 LGRSNYG-------MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 417 ---REERLEYLEGRLDELKLNR 435
L+ + L+ +KL +
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQK 1876
Score = 38.5 bits (89), Expect = 0.005
Identities = 46/238 (19%), Positives = 73/238 (30%), Gaps = 86/238 (36%)
Query: 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSG----LITTGAS 85
M+ ++ + + Q V + N S L + V S G V SG L G +
Sbjct: 338 MLSISN-LTQEQVQDYVN--KTN--SHLPAGKQVEISLVNGAKNLVVSGPPQSLY--GLN 390
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKA--H---LRPR 140
+ ++ PS G Q ++I P + +K + S FL + H L P
Sbjct: 391 LTLRKAKAPS-GLDQ------SRI-------P-FSERKLKFSNRFLPVASPFHSHLLVP- 434
Query: 141 TNTFGAVARVRNALAYATHKFFQENGFIWISS----PIITASDCEGAGEQFCVTTLIPSS 196
A + L +N + + P+ D G V S
Sbjct: 435 -----ASDLINKDLV--------KNNVSFNAKDIQIPVYDTFD----GSDLRV-----LS 472
Query: 197 REAAESPVDAI---PKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGP 251
+E VD I P + W E T +++ FGP
Sbjct: 473 GSISERIVDCIIRLP------VKW-----ET-------------TTQFKATHILDFGP 506
Score = 30.4 bits (68), Expect = 1.9
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 38/113 (33%)
Query: 354 GCDL--QSEHERYLTEEA-------FGGCPV-IVSDYPKEI-------KAFYMRQNDDGR 396
G DL S+ + + A +G + IV + P + K +R+N
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY--- 1688
Query: 397 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWY-----LDL 444
M+ I + G + E++ E+ + SY + L
Sbjct: 1689 ----SAMIFETIVD---GKLKTEKI------FKEINEHSTSYTFRSEKGLLSA 1728
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 44.8 bits (107), Expect = 5e-05
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 17/169 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L +Q V + Y + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVR 70
Query: 88 IQGNVVP-SQGSKQ----KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLR--- 138
+G V + + + +VE++++ + ++ ++ P +P+ E LR
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKY 130
Query: 139 ----PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R R+R+ + A F GF+ + +P +T S EGA
Sbjct: 131 RYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 40.5 bits (96), Expect = 9e-04
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-AEGYDQVKSGLITTGASI 86
VG + + GWV R S+ FI++ D + +Q D A+ + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCI 69
Query: 87 WIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLR 138
+ G V + + ++E+ + + ++ ++D P+ V+ E R K +L
Sbjct: 70 QVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVL-PLDSNHVNTEEARLKYRYLD 128
Query: 139 PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R + R + +F ++GF+ I +P++T + EGA
Sbjct: 129 LRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 40.2 bits (95), Expect = 0.001
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 23/152 (15%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 302
VY G FR E +T RH EF M+E A+AD +D M + ++ +L K
Sbjct: 245 VYEIGRVFRNEGIST-RHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQY 303
Query: 303 --EDMDFFNTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 359
+D W ++D + DF Q+S +A EL + + + +G
Sbjct: 304 GEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFG----- 358
Query: 360 EHERYLTEEAFGGC-------PVIVSDYPKEI 384
++ E F P + +P EI
Sbjct: 359 ----HIVNEFFEQKVEDKLIQPTFIYGHPVEI 386
Score = 30.9 bits (71), Expect = 0.86
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 7 EFRKKLKIVDVK----GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
F + K ++ E L+ + + VAG + T R F + D + +Q
Sbjct: 30 RFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVT--GQIQ 87
Query: 63 CVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115
+ D + Y+ K + G + ++G + ++ ++ +KV+ + K+
Sbjct: 88 IYVRQDDVGEQQYELFK--ISDLGDIVGVRGTMFKTK--VGELSIKVSSYEFLTKA 139
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 39.1 bits (92), Expect = 0.002
Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 18/152 (11%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 302
V+ FR E + RH EF M+E A+ D + M ++ L
Sbjct: 275 VFEINRNFRNEGVSP-RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQY 333
Query: 303 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKK-FEFLVKWGCDLQS 359
++D + I + A +D L + K+ + +
Sbjct: 334 QGRELDLAQPFHRLTITQAIQKYAPSYTDGQL-SDDAFLRSELKRLGVDVTQPAFLNAGI 392
Query: 360 EHERYLTEEAFGGC-------PVIVSDYPKEI 384
L F P + DYP E+
Sbjct: 393 GA---LQLALFEETAEAQLWEPTFIIDYPIEV 421
Score = 30.6 bits (70), Expect = 1.2
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 7 EFRKKLKIVDVK----GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+F+ D++ E L+ L + +AG + R +F V DGS +Q
Sbjct: 60 DFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGS--GQIQ 117
Query: 63 CVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115
+T E YD K G + +G + + K ++ +K ++ L+ K+
Sbjct: 118 FFVTPADVGAETYDAFKK--WDLGDIVAARGVLFRTN--KGELSVKCTQLRLLAKA 169
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 37.5 bits (88), Expect = 0.008
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 22/152 (14%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 302
V+ FR E + RH EF M+E +A+AD D + + + + + +L K
Sbjct: 254 VFEINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY 312
Query: 303 --EDMDFFNTWIEKGIIDRLSTVA-ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 359
DF + + + + + E D L DA + L + WG
Sbjct: 313 GEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGL---- 367
Query: 360 EHERYLTEEAFGGC-------PVIVSDYPKEI 384
+ E F P +++YP E+
Sbjct: 368 ---GRIVTEIFDEVAEAHLIQPTFITEYPAEV 396
Score = 27.9 bits (63), Expect = 7.6
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 7 EFRKKLKIVDVK----GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+FR+ + N+ L+ + + + VAG + T R +F+ + D +Q
Sbjct: 38 DFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVG--GRIQ 95
Query: 63 CVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115
+ D+ Y+ G I +G + +Q ++ + ++ L+ K+
Sbjct: 96 LYVARDSLPEGVYNDQFKKW-DLGDIIGARGTLFKTQ--TGELSIHCTELRLLTKA 148
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 36.4 bits (84), Expect = 0.013
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDMACATAYLQYV---VRYILDN 300
++ GP +R E+ HL EF M+ + ++ + T +L ++ + + D+
Sbjct: 158 IFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGIDFKIVGDS 216
Query: 301 C---KEDMDFFNTWIEKG 315
C + +D + +E
Sbjct: 217 CMVFGDTLDVMHGDLELS 234
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 36.4 bits (85), Expect = 0.016
Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 17/142 (11%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-ED 304
V+ +FR E H EF M+E D+ M L ++ +LD E
Sbjct: 112 VFQLCRSFRNEEMGR-YHNPEFTMLEWYRPHYDMYRLMN-EVDDL---LQQVLDCPAAES 166
Query: 305 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQSEH-E 362
+ + ++ ID + T E+ K + D L
Sbjct: 167 LSYQQAFLRYLEID---------PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFT 217
Query: 363 RYLTEEAFGGCPVIVSDYPKEI 384
+ P V +P
Sbjct: 218 FGVEPNIGKEKPTFVYHFPASQ 239
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 36.4 bits (85), Expect = 0.019
Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 24/159 (15%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM---------ACATAYLQYVVRY 296
VY G FR E + H EF E +A+AD D M Y V Y
Sbjct: 247 VYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTY 305
Query: 297 ILDNCKED---MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 353
D + +DF + +++ L + + + E + V
Sbjct: 306 HPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILD---DICVAK 362
Query: 354 GCDLQSEHER-YLTEEAFGGC-------PVIVSDYPKEI 384
+ L ++ G P + D+P+ +
Sbjct: 363 AVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIM 401
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 31.5 bits (71), Expect = 0.73
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 20/85 (23%)
Query: 216 DWSQDFFEKPAFLTVSGQLNAETYATALSNV-------------YTFGP--TFRAENSNT 260
F E VS +L ++ T+ + F FR E
Sbjct: 182 ILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED 241
Query: 261 SRHLAEF-----WMIEPELAFADLK 280
HL + + + D K
Sbjct: 242 KSHLMTYHSASCAIAGEGVDINDGK 266
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 31.5 bits (71), Expect = 0.75
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 20/85 (23%)
Query: 216 DWSQDFFEKPAFLTVSGQLNAETYATALSNV-------------YTFGP--TFRAENSNT 260
F E VS +L ++ T+ + F FR E
Sbjct: 182 ILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED 241
Query: 261 SRHLAEF-----WMIEPELAFADLK 280
HL + + + D K
Sbjct: 242 KSHLMTYHSASCAIAGEGVDINDGK 266
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide
complex, silencing, cell cycle, chromosome partition,
DNA-binding, nucleus; HET: M3L; 2.20A
{Schizosaccharomyces pombe}
Length = 61
Score = 28.0 bits (63), Expect = 1.0
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 341 IKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385
+ E+ +KW G D + E+ G ++ + K K
Sbjct: 18 VNKNGINEYYIKWAGYD--WYDNTWEPEQNLFGAEKVLKKWKKRKK 61
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 30.3 bits (68), Expect = 1.5
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 20/85 (23%)
Query: 216 DWSQDFFEKPAFLTVSGQLNAETYATALSNV-------------YTFGP--TFRAENSNT 260
F E VS +L ++ T+ + F FR E
Sbjct: 182 ILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED 241
Query: 261 SRHLAEF-----WMIEPELAFADLK 280
HL + + + D K
Sbjct: 242 KSHLMTYHSASCAIAGEGVDINDGK 266
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3
tail, choromatin organization modifier, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Length = 78
Score = 27.8 bits (62), Expect = 1.7
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 341 IKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 386
K K E+LV+W G D SE + + E+ C + D+ +
Sbjct: 24 KNKKGKTEYLVRWKGYD--SEDDTWEPEQHLVNCEEYIHDFNRRHTE 68
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest
center for structural genomics, protein struc
initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Length = 535
Score = 29.9 bits (67), Expect = 1.9
Identities = 20/148 (13%), Positives = 41/148 (27%), Gaps = 18/148 (12%)
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+P T D L + + F + +GQ E ++ + S +
Sbjct: 181 VPTTWDELENVLKAFKTQ--DPNGNGQ-ADEIPMNIKKLEGSYFTWYSPMLLLNSTGIVT 237
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
+ K+ D KE + +++ I +G+I
Sbjct: 238 GFNKGVSEYGFYAKNG--------VVKSFLTSDEYKEVIKYYHKLISEGLIP-------A 282
Query: 327 DFVQLSYTDAIELLIKAKKKFEFLVKWG 354
++ I K + V +G
Sbjct: 283 EWATKDDDAYNADQISDGKTAKTGVVFG 310
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural
genomics consortium, S repeat, nucleus, cell cycle;
2.05A {Homo sapiens} PDB: 3r93_A* 3svm_A* 3qo2_A*
Length = 62
Score = 27.3 bits (61), Expect = 2.0
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 344 KKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385
K + V+W G S+ + + E C ++ ++ K+I
Sbjct: 17 GGKVLYKVRWKGYT--SDDDTWEPEIHLEDCKEVLLEFRKKIA 57
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 30.0 bits (67), Expect = 2.0
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 20/85 (23%)
Query: 216 DWSQDFFEKPAFLTVSGQLNAETYATALSNV-------------YTFGP--TFRAENSNT 260
F E VS +L ++ T+ + F FR E
Sbjct: 182 ILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED 241
Query: 261 SRHLAEF-----WMIEPELAFADLK 280
HL + + + D K
Sbjct: 242 KSHLMTYHSASCAIAGEGVDINDGK 266
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 29.5 bits (67), Expect = 2.7
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 23/84 (27%)
Query: 305 MDFFNTWIEKGIID--RLSTVAERDFVQLSYTDAIELLIKAK---KKFEFLVKWGCDLQS 359
+ W+++G+ D RL D + K F + K+ +++
Sbjct: 183 AKY---WLKQGV-DGFRL--------------DGAMHIFPPAQYDKNFTWWEKFRQEIEE 224
Query: 360 EHERYLTEEAFGGCPVIVSDYPKE 383
YL E + + +
Sbjct: 225 VKPVYLVGEVWDISETVAPYFKYG 248
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP:
b.34.13.2
Length = 70
Score = 27.0 bits (60), Expect = 3.2
Identities = 5/45 (11%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 342 KAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385
+ + ++W S + + E GC +++++ + +
Sbjct: 21 RNGAVKLYRIRWLNYS--SRSDTWEPPENLSGCSAVLAEWKRRKR 63
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A
{Sphingomonas SP} PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A*
1y3q_A 1j1n_A* 1kwh_A
Length = 502
Score = 28.7 bits (64), Expect = 5.0
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 291 QYVVRYILDNCKEDMDFFNTWIEKGIID 318
+ + K+ + W ++G+ID
Sbjct: 217 KIKHPFAEVAFKDGIKHVAQWYKEGLID 244
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 28.0 bits (62), Expect = 7.4
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIE------PELAFADLKDDMACATAYLQ 291
FR E S L F M E P+ + M A A +
Sbjct: 171 FDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIAR 222
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 27.8 bits (63), Expect = 7.9
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 356 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA-------AMDMLVPRI 408
+E R + G P SD+ + K F + + +A A++ P +
Sbjct: 320 QEAAEFTRRMK----GEMP---SDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLL 372
Query: 409 GELIGGS 415
E +GGS
Sbjct: 373 PEFLGGS 379
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 27.9 bits (63), Expect = 8.6
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
Query: 356 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA-------AMDMLVPRI 408
+E ER + G P +D+ + A N+ G TVA ++ L +
Sbjct: 360 AEAAEFERRMA----GTLP---ADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVL 412
Query: 409 GELIGGS 415
EL+GGS
Sbjct: 413 PELLGGS 419
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 27.9 bits (62), Expect = 8.7
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 29/93 (31%)
Query: 292 YVVRYILDNCKEDMDFFNTWIEKGIID--RLSTVAERDFVQLSYTDAIELLIKAKKKFEF 349
V Y+ D K W++ GI D R++ V F +
Sbjct: 206 TVDVYLKDAIK-------MWLDLGI-DGIRMNAVKHMPF-------------------GW 238
Query: 350 LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 382
+ + + + + F G + + K
Sbjct: 239 QKSFMAAVNNYKPVFTFGQWFLGVNEVSPENHK 271
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,248,277
Number of extensions: 442860
Number of successful extensions: 1034
Number of sequences better than 10.0: 1
Number of HSP's gapped: 949
Number of HSP's successfully gapped: 59
Length of query: 464
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 367
Effective length of database: 3,993,456
Effective search space: 1465598352
Effective search space used: 1465598352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)