RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012426
(464 letters)
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 161 bits (408), Expect = 1e-46
Identities = 77/318 (24%), Positives = 126/318 (39%), Gaps = 50/318 (15%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
++ R A +V+ AL ++ F I +P + + EG F V
Sbjct: 3 YVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV------ 56
Query: 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRA 255
D+FEK A+L S QL + VY P +R
Sbjct: 57 ------------------------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRM 92
Query: 256 ENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFFNTWIEK 314
E +TSRHL E+ ++ E+ F ++D M A L ++ L+ +++
Sbjct: 93 EEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPS 152
Query: 315 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFG 371
+D +L++ +A +L K E G DL E ER L E E +G
Sbjct: 153 ---------FPQDIPRLTHAEAKRIL-----KEELGYPVGQDLSEEAERLLGEYAKERWG 198
Query: 372 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431
+ V+ YP+ ++ FY +DG T + L+ R E+ G QR R E L L
Sbjct: 199 SDWLFVTRYPRSVRPFYTYPEEDGTTRS--FDLLFRGLEITSGGQRIHRYEELLESLKAK 256
Query: 432 KLNRDSYWWYLDLRHYGS 449
++ +++ YL++ YG
Sbjct: 257 GMDPEAFHGYLEVFKYGM 274
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 146 bits (368), Expect = 6e-41
Identities = 52/321 (16%), Positives = 93/321 (28%), Gaps = 76/321 (23%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIW----ISSPIITASDCEGAGEQFCVTT 191
+ + ++ + FF + GF W I SPI + AGE
Sbjct: 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGE------ 55
Query: 192 LIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL-NAETYATALSNVYTFG 250
G+ + + LT S L A L ++
Sbjct: 56 ---------------------GMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLS 94
Query: 251 PTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFF 308
P R E+ + RH EF ++ E+ A ++D M + + R + +
Sbjct: 95 PNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKT 154
Query: 309 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE 368
+ + FE+ SE +
Sbjct: 155 KRF---------------------------------EVFEY---------SEVLEEFGSD 172
Query: 369 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 428
+ + I + + DG +L GE+ G +RE E + ++
Sbjct: 173 EKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKI 232
Query: 429 DELKLNRDSYWWYLDLRHYGS 449
+ LN DS+ YL++ G
Sbjct: 233 RKAGLNEDSFRPYLEIAKAGK 253
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 137 bits (346), Expect = 3e-37
Identities = 65/318 (20%), Positives = 118/318 (37%), Gaps = 38/318 (11%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
+ RT T A+ R++ + ++ F + +P + + EG F V
Sbjct: 32 VIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------ 85
Query: 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFR 254
+F+ A+L S Q N + A VY GP FR
Sbjct: 86 ------------------------TYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFR 121
Query: 255 AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQY-VVRYILDNCKEDMDFFNTWIE 313
AENSNT RH+ EF ++ E+AF + ++ + L + + +++
Sbjct: 122 AENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYP 181
Query: 314 KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 373
++ + V+L+Y + IE+L A K+ + + + L + +
Sbjct: 182 ---VEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGK-LVRDKYDTD 237
Query: 374 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKL 433
I+ +P EI+ FY + + R E++ G+QR L+ R+ L
Sbjct: 238 FYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGL 297
Query: 434 NRD--SYWWYLDLRHYGS 449
+ + Y D YG
Sbjct: 298 SPEDPGLKDYCDGFSYGC 315
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 130 bits (327), Expect = 1e-34
Identities = 61/338 (18%), Positives = 108/338 (31%), Gaps = 64/338 (18%)
Query: 120 PIQKKRVSREFLRTKA-HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
P+ V+ E R K +L R + R + +F ++GF+ I +P++T +
Sbjct: 3 PLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKA 62
Query: 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238
EGA + S+ K L S QL +
Sbjct: 63 TPEGARDYLV----------------------------PSRVHKGKFYALPQSPQLFKQL 94
Query: 239 YATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 297
+ Y FR E+ R EF I+ E +F A ++++
Sbjct: 95 LMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRHLW--- 150
Query: 298 LDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL 357
L+ D+ F R + + + ++ W D
Sbjct: 151 LEVKGVDLGDFPVMTFAEAERRYGSDKP----------------DLRDESKWAPLWVIDF 194
Query: 358 ---QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG 414
+ + E LT PK++ A ++ + A DM++ E+ GG
Sbjct: 195 PMFEDDGEGGLTAMHH------PFTSPKDMTAAELKAAPENAVANAYDMVING-YEVGGG 247
Query: 415 SQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYG 448
S R + + L +N R+ + + LD YG
Sbjct: 248 SVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYG 285
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 126 bits (316), Expect = 3e-33
Identities = 86/334 (25%), Positives = 138/334 (41%), Gaps = 42/334 (12%)
Query: 117 PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIIT 176
P P K + + + R A+ ++R+++ A FF ENGFI I +P I
Sbjct: 3 PLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKII 62
Query: 177 ASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL-N 235
A+ EG E F +FE+ AFL S QL
Sbjct: 63 ATATEGGTELFP------------------------------MKYFEEDAFLAESPQLYK 92
Query: 236 AETYATALSNVYTFGPTFRAENSNTSRHLAEFWMI-EPELAFADLKDDMACATAYLQYVV 294
A+ L VY P FRAE NT+RHL E W I D ++ M+ + + +
Sbjct: 93 EIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAI 152
Query: 295 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 354
Y+ ++ +++D N +E+ + F ++SY A+E+L K+ +
Sbjct: 153 NYVREHNAKELDILNFELEEPKLP---------FPRVSYDKALEILGDLGKEIPWGEDID 203
Query: 355 CDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG 414
+ + +Y+ E + YP E K FY+ + D+ + L R E+ G
Sbjct: 204 TEGERLLGKYMMEN-ENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSG 262
Query: 415 SQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG 448
QRE R + L ++ E LN +S+ +YL YG
Sbjct: 263 GQREHRHDILVEQIKEKGLNPESFEFYLKAFRYG 296
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 126 bits (317), Expect = 3e-33
Identities = 47/325 (14%), Positives = 91/325 (28%), Gaps = 46/325 (14%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
+ VR+ + A +F GF+ + +P++ + F
Sbjct: 15 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHH-------- 66
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
+ + +L ++ +L +
Sbjct: 67 --------------------NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI 106
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319
+ RH EF M+E +A+AD D + + + + + +L K K
Sbjct: 107 SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKL 166
Query: 320 LSTVA------ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQSEHERYLTEEAFGG 372
A E D L DA + L + WG + +E + E
Sbjct: 167 TMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGLGRIVTEIFDEVAEAHL-I 224
Query: 373 CPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 432
P +++YP E+ R + + + + E+ G E R E
Sbjct: 225 QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG-REIGNGFSELNDAEDQAERFQEQV 283
Query: 433 LNRDS--------YWWYLDLRHYGS 449
+ + Y+ YG
Sbjct: 284 NAKAAGDDEAMFYDEDYVTALEYGL 308
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 119 bits (298), Expect = 2e-30
Identities = 59/344 (17%), Positives = 104/344 (30%), Gaps = 63/344 (18%)
Query: 117 PSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169
P +P+ S E +L R R+R+ + A F GF+
Sbjct: 2 PPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQ 61
Query: 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229
+ +P +T S EGA + + L
Sbjct: 62 VETPFLTKSTPEGARDFLV----------------------------PYRHEPGLFYALP 93
Query: 230 VSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 288
S QL + A L + FR E+ +F ++ E++F +++D +
Sbjct: 94 QSPQLFKQMLMVAGLDRYFQIARCFRDEDLRA-DRQPDFTQLDLEMSFVEVEDVLELNER 152
Query: 289 YLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE 348
+ +V R L + F + Y L + +F
Sbjct: 153 LMAHVFREALGVEL-PLPFPRLSY--------------EEAMERYGSDKPDLRREGFRFL 197
Query: 349 FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 408
++V + E E T S +P++ + + D GR A LV
Sbjct: 198 WVVDFPLLEWDEEEEAWTYM----HHPFTSPHPED---LPLLEKDPGRVRALAYDLVLNG 250
Query: 409 GELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYG 448
E+ GGS R L + + + ++L+ YG
Sbjct: 251 VEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYG 294
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 60.6 bits (147), Expect = 2e-12
Identities = 12/95 (12%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS 85
VG + + G++ R + F+ + D S + + +
Sbjct: 10 AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPES-----------A 58
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+ ++G VV + + +E++ ++ ++ + P
Sbjct: 59 LRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 56.2 bits (135), Expect = 1e-10
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + + + + +
Sbjct: 15 NGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQI-TAPKKKVDPELFKLIPKLRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSD 116
++G V + +K E+ KIV++ +++
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAE 102
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 52.0 bits (124), Expect = 6e-09
Identities = 16/117 (13%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q + + F+ + + L
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANK 75
Query: 68 DAEGYDQ--VKSGLITTGASIWIQGNVVPS-----QGSKQKVELKVNKIVLVGKSDP 117
+ +G + + + ++G V + Q +E+ + KI + ++
Sbjct: 76 EGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 104
Score = 40.8 bits (95), Expect = 3e-05
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L + + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVA----HPASPAYATAERVRPEWVVR 70
Query: 88 IQGNVVPSQGSKQK-----VELKVNKIVLVGKS 115
+G V + VE++++ + ++ ++
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 39.6 bits (92), Expect = 7e-05
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R S+ FI++ D + + + + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRA---DALKLASELRNEFCIQ 70
Query: 88 IQGNVVPSQGSKQ-------KVELKVNKIVLVGKSD 116
+ G V ++E+ + + ++ ++D
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 69
Score = 27.9 bits (62), Expect = 0.44
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 342 KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 392
+ ++LVKW L + + IV P+++K F R+N
Sbjct: 22 DGTSQLQYLVKW-RRLNYDEATWENATD------IVKLAPEQVKHFQNREN 65
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 70
Score = 27.8 bits (62), Expect = 0.51
Identities = 5/45 (11%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 341 IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385
+ + ++W + S + + E GC +++++ + +
Sbjct: 20 DRNGAVKLYRIRW-LNYSSRSDTWEPPENLSGCSAVLAEWKRRKR 63
>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 132
Score = 28.4 bits (62), Expect = 0.85
Identities = 11/90 (12%), Positives = 23/90 (25%)
Query: 139 PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSRE 198
TN G+ + + A+ N +S + + +
Sbjct: 41 SVTNPDGSGIKGKEAVGAFFDTHIAANRLTVTCEETFPSSSPDEIAHILVLHSEFDGGFT 100
Query: 199 AAESPVDAIPKTKDGLIDWSQDFFEKPAFL 228
+ V K GLI + ++
Sbjct: 101 SEVRGVFTYRVNKAGLITNMRGYWNLDMMT 130
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 26.7 bits (59), Expect = 1.2
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 341 IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 383
K K E+LV+W SE + + E+ C + D+ +
Sbjct: 17 KNKKGKTEYLVRW-KGYDSEDDTWEPEQHLVNCEEYIHDFNRR 58
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 27.2 bits (60), Expect = 1.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 318 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 352
DR+ V D S+ A+E + KA F+V+
Sbjct: 59 DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 93
>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity
protein par6 (Par-6B) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 98
Score = 26.8 bits (59), Expect = 1.8
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 318 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 352
D + V + + ++++ VK
Sbjct: 61 DEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK 95
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc
6803 [TaxId: 1148]}
Length = 249
Score = 28.1 bits (62), Expect = 2.0
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 223 EKPAFLT--VSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L 279
E A++ + G + E + L+N+Y A + + PEL D L
Sbjct: 19 ENTAYMKCFLKGIVEREPFRQLLANLYYLYSALEAALRQHRDNEIISAIYFPELNRTDKL 78
Query: 280 KDDMA 284
+D+
Sbjct: 79 AEDLT 83
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 81
Score = 26.4 bits (58), Expect = 2.5
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 334 TDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 373
+ L K+ +EFL+KW D H + T E+ G
Sbjct: 27 EKTVPDLNNCKENYEFLIKW-TDESHLHNTWETYESIGQV 65
>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium
diphtheriae [TaxId: 1717]}
Length = 207
Score = 27.0 bits (59), Expect = 3.8
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 231 SGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMA 284
G+L + + F +++P L A+ L D+
Sbjct: 28 KGRLGVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLD 82
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit
(RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 26.3 bits (58), Expect = 4.4
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 31 MIVVAGWVRTLRAQSSVTFIEVNDGS--CLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
+ + G +R + +++D + + Q V T D + V + + +
Sbjct: 30 QVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTV----VPPETYVKV 85
Query: 89 QGNVVPSQGSKQKVELKVNKI 109
G++ Q K V K+ +
Sbjct: 86 AGHLRSFQNKKSLVAFKIMPL 106
>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp.
[TaxId: 1143]}
Length = 222
Score = 26.6 bits (58), Expect = 6.5
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 231 SGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMA 284
G + +Y + N+Y E + H + PEL L+ D+
Sbjct: 30 KGVVEKNSYRKLVGNLYFVYSAMEEEMAKFKDHPILSHIYFPELNRKQSLEQDLQ 84
>d1j7xa_ c.14.1.2 (A:) Interphotoreceptor retinoid-binding protein
IRBP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 302
Score = 26.5 bits (58), Expect = 7.8
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 397 TVAAMDMLVPRIGEL-IGGSQREERLEYLEGRLDELKLNRDSYWWY--LDLRHYGSGLVF 453
TV + +L IG L + L + + +DLR+ G
Sbjct: 97 TVFKVSILPGNIGYLRFDQFADVSVIAKLAPFIVNTVWEPITITENLIIDLRYNVGGSST 156
Query: 454 ILIKVTNFL 462
+ + ++
Sbjct: 157 AVPLLLSYF 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,770,299
Number of extensions: 83288
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 31
Length of query: 464
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 376
Effective length of database: 1,199,356
Effective search space: 450957856
Effective search space used: 450957856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)