Query 012427
Match_columns 464
No_of_seqs 141 out of 1728
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 02:32:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 3.4E-57 7.3E-62 395.1 27.9 351 28-447 62-412 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 5.6E-57 1.2E-61 420.0 28.8 351 29-446 93-452 (519)
3 PRK04837 ATP-dependent RNA hel 100.0 1.9E-54 4.1E-59 417.7 33.0 353 27-446 8-366 (423)
4 PTZ00110 helicase; Provisional 100.0 4.8E-54 1E-58 422.8 35.4 360 13-445 121-487 (545)
5 COG0513 SrmB Superfamily II DN 100.0 2.4E-53 5.2E-58 413.8 33.3 346 29-442 31-380 (513)
6 PRK11776 ATP-dependent RNA hel 100.0 5E-53 1.1E-57 412.3 33.2 346 29-445 6-352 (460)
7 PRK04537 ATP-dependent RNA hel 100.0 6.2E-53 1.3E-57 416.2 34.0 351 29-445 11-367 (572)
8 PRK10590 ATP-dependent RNA hel 100.0 5.9E-53 1.3E-57 409.7 32.1 348 29-445 3-355 (456)
9 PLN00206 DEAD-box ATP-dependen 100.0 1.3E-52 2.8E-57 411.9 33.4 355 17-445 116-478 (518)
10 KOG0345 ATP-dependent RNA heli 100.0 1.1E-52 2.5E-57 375.2 29.0 345 34-441 12-363 (567)
11 PRK11192 ATP-dependent RNA hel 100.0 2.8E-52 6.2E-57 404.7 33.9 349 29-446 3-356 (434)
12 PRK01297 ATP-dependent RNA hel 100.0 1.3E-51 2.9E-56 403.1 37.2 349 29-443 89-443 (475)
13 KOG0350 DEAD-box ATP-dependent 100.0 1.2E-52 2.7E-57 377.5 27.1 414 10-449 109-547 (620)
14 KOG0328 Predicted ATP-dependen 100.0 4.3E-53 9.4E-58 354.0 22.1 347 34-449 33-380 (400)
15 PRK11634 ATP-dependent RNA hel 100.0 9.5E-52 2.1E-56 409.7 34.5 346 29-444 8-354 (629)
16 KOG0342 ATP-dependent RNA heli 100.0 2.4E-52 5.3E-57 375.6 25.8 352 26-444 81-439 (543)
17 KOG0338 ATP-dependent RNA heli 100.0 3.9E-52 8.5E-57 374.9 25.4 345 35-445 188-536 (691)
18 KOG0333 U5 snRNP-like RNA heli 100.0 1.5E-51 3.3E-56 372.5 26.2 383 15-449 238-631 (673)
19 KOG0343 RNA Helicase [RNA proc 100.0 2.5E-51 5.5E-56 373.0 27.2 358 28-451 70-431 (758)
20 PTZ00424 helicase 45; Provisio 100.0 2E-50 4.4E-55 389.4 33.6 351 28-448 29-380 (401)
21 KOG0340 ATP-dependent RNA heli 100.0 7.3E-51 1.6E-55 351.3 24.9 350 28-445 8-364 (442)
22 KOG0326 ATP-dependent RNA heli 100.0 3E-50 6.5E-55 342.6 16.6 346 34-449 91-436 (459)
23 KOG0335 ATP-dependent RNA heli 100.0 8.5E-49 1.8E-53 358.8 25.5 348 34-444 80-446 (482)
24 KOG0348 ATP-dependent RNA heli 100.0 1.9E-48 4.1E-53 353.1 27.2 375 19-445 128-557 (708)
25 KOG0347 RNA helicase [RNA proc 100.0 6.4E-49 1.4E-53 357.3 18.9 355 29-447 183-575 (731)
26 KOG0346 RNA helicase [RNA proc 100.0 3.4E-48 7.4E-53 343.6 22.5 351 29-446 21-414 (569)
27 TIGR03817 DECH_helic helicase/ 100.0 2.6E-47 5.7E-52 385.5 30.4 348 34-448 20-392 (742)
28 KOG0336 ATP-dependent RNA heli 100.0 8.8E-48 1.9E-52 338.0 20.9 353 27-447 219-577 (629)
29 KOG0332 ATP-dependent RNA heli 100.0 6.5E-47 1.4E-51 328.9 20.2 356 24-448 87-449 (477)
30 KOG0339 ATP-dependent RNA heli 100.0 1.1E-45 2.4E-50 333.0 24.7 357 16-445 217-578 (731)
31 KOG0341 DEAD-box protein abstr 100.0 5.4E-47 1.2E-51 330.9 15.1 368 5-447 152-533 (610)
32 TIGR00614 recQ_fam ATP-depende 100.0 9.2E-45 2E-49 353.3 27.5 326 44-446 5-337 (470)
33 PLN03137 ATP-dependent DNA hel 100.0 9.5E-44 2.1E-48 357.2 31.3 332 35-444 444-789 (1195)
34 PRK11057 ATP-dependent DNA hel 100.0 2.7E-43 5.7E-48 351.7 31.1 330 35-445 9-346 (607)
35 KOG0327 Translation initiation 100.0 3.3E-44 7.1E-49 314.7 20.0 363 22-460 26-388 (397)
36 KOG0334 RNA helicase [RNA proc 100.0 6.9E-44 1.5E-48 349.3 22.3 358 14-444 357-722 (997)
37 PRK02362 ski2-like helicase; P 100.0 4.1E-43 8.9E-48 359.2 28.8 342 29-443 3-398 (737)
38 KOG4284 DEAD box protein [Tran 100.0 5.1E-44 1.1E-48 330.8 19.6 357 18-444 16-381 (980)
39 TIGR01389 recQ ATP-dependent D 100.0 2.7E-42 5.8E-47 345.9 28.6 325 41-444 3-333 (591)
40 KOG0344 ATP-dependent RNA heli 100.0 7.7E-43 1.7E-47 321.8 22.5 375 6-445 115-498 (593)
41 KOG0337 ATP-dependent RNA heli 100.0 3.4E-42 7.4E-47 304.0 20.7 360 22-455 21-381 (529)
42 PRK13767 ATP-dependent helicas 100.0 4.2E-41 9E-46 347.3 31.4 347 34-441 17-397 (876)
43 TIGR00580 mfd transcription-re 100.0 3.6E-40 7.9E-45 336.4 32.5 328 37-443 439-771 (926)
44 PRK00254 ski2-like helicase; P 100.0 1.2E-40 2.5E-45 340.3 28.7 343 30-448 4-394 (720)
45 PRK01172 ski2-like helicase; P 100.0 1.8E-40 3.9E-45 337.7 28.4 355 29-459 3-396 (674)
46 COG1111 MPH1 ERCC4-like helica 100.0 2E-40 4.2E-45 301.3 24.4 367 48-449 13-488 (542)
47 COG1201 Lhr Lhr-like helicases 100.0 5.1E-40 1.1E-44 323.9 25.7 343 34-441 7-361 (814)
48 PRK10917 ATP-dependent DNA hel 100.0 3.7E-39 8.1E-44 325.2 32.1 326 37-441 249-588 (681)
49 TIGR00643 recG ATP-dependent D 100.0 4.4E-39 9.4E-44 322.8 31.6 328 37-440 223-564 (630)
50 COG0514 RecQ Superfamily II DN 100.0 3.2E-39 6.8E-44 307.2 25.7 331 39-446 5-341 (590)
51 PRK10689 transcription-repair 100.0 2E-38 4.3E-43 330.5 32.5 328 36-442 587-919 (1147)
52 COG1202 Superfamily II helicas 100.0 8.9E-38 1.9E-42 286.4 20.9 358 14-443 181-554 (830)
53 PHA02558 uvsW UvsW helicase; P 100.0 6.3E-37 1.4E-41 299.8 27.0 311 49-443 113-453 (501)
54 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.3E-36 2.7E-41 301.7 29.3 330 39-441 4-390 (844)
55 PRK09751 putative ATP-dependen 100.0 4.9E-37 1.1E-41 321.6 27.3 313 74-446 1-387 (1490)
56 TIGR00603 rad25 DNA repair hel 100.0 5.1E-37 1.1E-41 301.5 24.1 328 50-464 255-627 (732)
57 COG1204 Superfamily II helicas 100.0 2.9E-36 6.2E-41 301.7 25.7 356 35-459 16-424 (766)
58 KOG0329 ATP-dependent RNA heli 100.0 2E-36 4.3E-41 250.5 15.2 316 29-448 44-361 (387)
59 COG1205 Distinct helicase fami 100.0 4E-35 8.6E-40 297.7 27.8 353 35-449 55-429 (851)
60 PHA02653 RNA helicase NPH-II; 100.0 8.8E-35 1.9E-39 287.2 22.9 319 49-444 159-516 (675)
61 KOG0354 DEAD-box like helicase 100.0 1.2E-34 2.6E-39 279.1 21.2 363 47-442 59-529 (746)
62 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.6E-34 5.6E-39 290.7 24.3 305 62-446 10-340 (819)
63 PRK13766 Hef nuclease; Provisi 100.0 1.4E-33 3.1E-38 292.7 29.1 326 49-447 14-484 (773)
64 TIGR01587 cas3_core CRISPR-ass 100.0 7.2E-34 1.6E-38 269.6 24.5 315 71-443 1-337 (358)
65 PRK11664 ATP-dependent RNA hel 100.0 4.6E-34 1E-38 289.6 23.2 306 61-446 12-343 (812)
66 PRK09401 reverse gyrase; Revie 100.0 6.6E-33 1.4E-37 290.0 29.5 333 40-429 70-431 (1176)
67 PRK12898 secA preprotein trans 100.0 3.2E-33 6.8E-38 271.7 24.2 356 46-443 100-587 (656)
68 KOG0952 DNA/RNA helicase MER3/ 100.0 1.9E-33 4.1E-38 274.2 21.9 353 46-461 106-509 (1230)
69 TIGR03714 secA2 accessory Sec 100.0 7.6E-33 1.7E-37 272.1 25.6 361 50-445 68-540 (762)
70 PRK14701 reverse gyrase; Provi 100.0 9.2E-33 2E-37 294.8 27.3 344 38-436 67-450 (1638)
71 COG1200 RecG RecG-like helicas 100.0 2.4E-32 5.1E-37 259.5 26.4 327 39-443 252-592 (677)
72 PRK09200 preprotein translocas 100.0 1.3E-32 2.7E-37 273.3 24.1 358 46-444 75-543 (790)
73 COG1061 SSL2 DNA or RNA helica 100.0 1.3E-32 2.8E-37 263.9 22.1 334 49-429 35-376 (442)
74 TIGR00963 secA preprotein tran 100.0 2.4E-31 5.1E-36 260.0 27.2 359 46-446 53-521 (745)
75 KOG0351 ATP-dependent DNA heli 100.0 7.1E-32 1.5E-36 271.9 20.8 335 37-448 251-598 (941)
76 TIGR03158 cas3_cyano CRISPR-as 100.0 2E-30 4.3E-35 243.0 27.6 311 54-427 1-357 (357)
77 TIGR01054 rgy reverse gyrase. 100.0 1.8E-30 3.9E-35 272.2 30.1 317 38-414 66-409 (1171)
78 KOG0352 ATP-dependent DNA heli 100.0 7.3E-31 1.6E-35 232.9 18.4 330 38-446 6-366 (641)
79 COG1197 Mfd Transcription-repa 100.0 1.5E-29 3.2E-34 253.8 29.6 328 37-443 582-914 (1139)
80 PRK04914 ATP-dependent helicas 100.0 4.7E-30 1E-34 261.3 26.5 129 317-448 478-611 (956)
81 KOG0951 RNA helicase BRR2, DEA 100.0 1.4E-30 3E-35 257.6 21.7 363 34-461 295-720 (1674)
82 PRK11448 hsdR type I restricti 100.0 7.3E-30 1.6E-34 265.7 24.6 330 50-446 413-819 (1123)
83 PRK05580 primosome assembly pr 100.0 1.5E-28 3.2E-33 247.3 27.5 321 50-442 144-549 (679)
84 COG4098 comFA Superfamily II D 100.0 7.8E-29 1.7E-33 214.4 21.3 306 49-442 96-416 (441)
85 PRK09694 helicase Cas3; Provis 100.0 5.3E-28 1.1E-32 244.9 28.8 335 49-431 285-664 (878)
86 KOG0349 Putative DEAD-box RNA 100.0 2.3E-28 4.9E-33 217.5 22.0 292 103-449 288-622 (725)
87 PRK11131 ATP-dependent RNA hel 100.0 5.5E-28 1.2E-32 249.6 23.8 300 62-446 82-415 (1294)
88 TIGR00595 priA primosomal prot 100.0 9.9E-28 2.1E-32 232.9 22.4 296 73-439 1-378 (505)
89 KOG0353 ATP-dependent DNA heli 100.0 2.9E-28 6.4E-33 213.5 16.1 340 31-445 75-470 (695)
90 PRK13104 secA preprotein trans 100.0 7.5E-27 1.6E-31 231.7 24.1 355 50-445 82-590 (896)
91 PLN03142 Probable chromatin-re 100.0 8.1E-27 1.8E-31 238.5 25.1 365 50-449 169-606 (1033)
92 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.2E-27 1.1E-31 243.4 22.3 306 60-446 73-408 (1283)
93 PRK12904 preprotein translocas 100.0 1.3E-26 2.9E-31 229.8 22.9 357 46-446 78-577 (830)
94 cd00268 DEADc DEAD-box helicas 99.9 2E-26 4.4E-31 200.7 20.7 201 29-294 1-202 (203)
95 PRK12906 secA preprotein trans 99.9 4.3E-26 9.4E-31 225.2 23.4 357 46-444 77-555 (796)
96 TIGR01407 dinG_rel DnaQ family 99.9 4.5E-25 9.8E-30 229.1 29.7 416 33-457 229-829 (850)
97 COG0556 UvrB Helicase subunit 99.9 2.8E-25 6.1E-30 203.4 23.7 169 266-446 386-561 (663)
98 COG4096 HsdR Type I site-speci 99.9 4.7E-25 1E-29 212.8 23.0 353 49-445 164-548 (875)
99 PRK12899 secA preprotein trans 99.9 1.9E-24 4E-29 214.4 27.1 144 35-210 69-228 (970)
100 KOG0947 Cytoplasmic exosomal R 99.9 5.3E-25 1.1E-29 213.3 20.4 325 35-440 279-721 (1248)
101 TIGR00348 hsdR type I site-spe 99.9 2.1E-24 4.5E-29 217.3 24.9 336 36-443 214-649 (667)
102 KOG1123 RNA polymerase II tran 99.9 2.8E-25 6.1E-30 201.3 16.5 329 49-464 301-673 (776)
103 PRK13107 preprotein translocas 99.9 9.6E-25 2.1E-29 216.1 21.3 354 50-444 82-593 (908)
104 KOG0950 DNA polymerase theta/e 99.9 7.3E-25 1.6E-29 213.6 19.5 348 35-448 207-617 (1008)
105 KOG0385 Chromatin remodeling c 99.9 3.9E-24 8.4E-29 203.2 23.6 365 49-449 166-606 (971)
106 COG4581 Superfamily II RNA hel 99.9 8.7E-24 1.9E-28 212.5 22.0 317 43-439 113-532 (1041)
107 KOG0948 Nuclear exosomal RNA h 99.9 9E-25 1.9E-29 206.8 12.1 316 46-445 126-542 (1041)
108 COG1110 Reverse gyrase [DNA re 99.9 9.9E-23 2.1E-27 199.9 26.3 325 41-413 73-416 (1187)
109 COG4889 Predicted helicase [Ge 99.9 2.3E-24 4.9E-29 207.0 11.9 351 38-430 149-573 (1518)
110 PRK07246 bifunctional ATP-depe 99.9 1E-21 2.3E-26 201.1 28.2 394 47-457 243-798 (820)
111 COG1203 CRISPR-associated heli 99.9 1.7E-22 3.6E-27 205.7 20.7 342 50-442 195-550 (733)
112 PF00270 DEAD: DEAD/DEAH box h 99.9 1.8E-22 3.9E-27 170.6 16.6 147 52-225 1-147 (169)
113 KOG0384 Chromodomain-helicase 99.9 8.8E-23 1.9E-27 203.1 16.3 377 49-448 369-817 (1373)
114 TIGR00631 uvrb excinuclease AB 99.9 6E-21 1.3E-25 190.0 29.1 125 316-444 424-555 (655)
115 KOG0387 Transcription-coupled 99.9 3.6E-21 7.8E-26 184.1 22.1 376 49-449 204-665 (923)
116 KOG0922 DEAH-box RNA helicase 99.9 3.9E-21 8.5E-26 181.6 21.4 308 61-448 58-396 (674)
117 COG1643 HrpA HrpA-like helicas 99.9 8.9E-21 1.9E-25 189.7 23.9 309 62-448 58-393 (845)
118 PRK08074 bifunctional ATP-depe 99.9 1.5E-20 3.2E-25 196.2 26.6 125 331-457 751-908 (928)
119 COG1198 PriA Primosomal protei 99.9 2.7E-21 5.9E-26 190.6 19.7 322 50-442 198-603 (730)
120 TIGR03117 cas_csf4 CRISPR-asso 99.9 1.6E-20 3.4E-25 183.9 24.5 125 331-461 469-634 (636)
121 PRK12900 secA preprotein trans 99.9 1.7E-21 3.7E-26 194.1 17.7 129 313-446 577-715 (1025)
122 KOG0390 DNA repair protein, SN 99.9 2.7E-20 5.8E-25 182.5 23.1 378 49-449 237-714 (776)
123 PRK12326 preprotein translocas 99.9 4.9E-20 1.1E-24 178.7 23.3 356 46-444 75-549 (764)
124 KOG1000 Chromatin remodeling p 99.9 3.3E-20 7.1E-25 168.5 19.4 336 47-461 195-622 (689)
125 KOG0389 SNF2 family DNA-depend 99.9 1.2E-20 2.6E-25 180.3 16.2 372 50-450 399-896 (941)
126 PRK11747 dinG ATP-dependent DN 99.8 6.1E-19 1.3E-23 178.6 27.4 121 331-457 533-689 (697)
127 PRK05298 excinuclease ABC subu 99.8 2E-18 4.4E-23 173.5 29.7 121 318-442 430-557 (652)
128 KOG0926 DEAH-box RNA helicase 99.8 1.5E-19 3.4E-24 172.7 19.7 318 62-445 264-707 (1172)
129 PRK13103 secA preprotein trans 99.8 1.8E-19 3.9E-24 179.1 20.5 357 47-446 80-595 (913)
130 KOG0923 mRNA splicing factor A 99.8 2.2E-19 4.9E-24 168.5 16.8 300 63-442 274-606 (902)
131 COG1199 DinG Rad3-related DNA 99.8 1E-18 2.2E-23 178.7 22.0 78 44-124 9-86 (654)
132 KOG0949 Predicted helicase, DE 99.8 3E-19 6.5E-24 174.2 15.3 148 50-226 511-661 (1330)
133 KOG0920 ATP-dependent RNA heli 99.8 5.6E-18 1.2E-22 169.2 23.1 324 51-448 174-550 (924)
134 TIGR00604 rad3 DNA repair heli 99.8 4.2E-18 9.2E-23 174.0 22.2 79 46-125 6-84 (705)
135 PRK12903 secA preprotein trans 99.8 3E-18 6.4E-23 168.8 18.6 357 46-445 75-542 (925)
136 KOG0924 mRNA splicing factor A 99.8 3E-17 6.4E-22 154.8 21.3 311 50-445 356-700 (1042)
137 CHL00122 secA preprotein trans 99.8 2.6E-17 5.7E-22 163.1 20.6 130 46-209 73-208 (870)
138 cd00079 HELICc Helicase superf 99.8 4E-18 8.6E-23 137.5 11.8 118 318-438 12-131 (131)
139 smart00487 DEXDc DEAD-like hel 99.8 2.3E-17 5E-22 143.5 16.9 187 45-297 3-191 (201)
140 KOG4150 Predicted ATP-dependen 99.8 8E-18 1.7E-22 155.6 12.5 346 39-449 275-647 (1034)
141 PRK12902 secA preprotein trans 99.7 2.4E-16 5.2E-21 156.1 21.9 129 47-209 83-217 (939)
142 KOG0392 SNF2 family DNA-depend 99.7 1.3E-16 2.8E-21 159.3 19.7 368 50-449 975-1461(1549)
143 PF00271 Helicase_C: Helicase 99.7 1.7E-17 3.7E-22 120.0 6.8 77 351-430 2-78 (78)
144 KOG0386 Chromatin remodeling c 99.7 1.6E-16 3.5E-21 156.0 14.3 354 49-439 393-833 (1157)
145 KOG0951 RNA helicase BRR2, DEA 99.7 1.6E-15 3.6E-20 151.9 21.4 332 50-461 1143-1512(1674)
146 KOG0925 mRNA splicing factor A 99.7 4.5E-15 9.8E-20 135.2 21.5 331 28-446 26-391 (699)
147 KOG0391 SNF2 family DNA-depend 99.7 1.8E-15 3.9E-20 150.2 18.8 131 316-449 1258-1394(1958)
148 PF04851 ResIII: Type III rest 99.7 1.2E-16 2.7E-21 136.9 9.5 147 50-213 3-162 (184)
149 KOG0953 Mitochondrial RNA heli 99.7 3.9E-16 8.5E-21 144.3 12.8 269 70-440 192-475 (700)
150 KOG0388 SNF2 family DNA-depend 99.7 6.6E-15 1.4E-19 139.7 19.0 130 316-448 1026-1160(1185)
151 cd00046 DEXDc DEAD-like helica 99.6 1.2E-14 2.6E-19 118.9 16.3 122 70-216 1-122 (144)
152 PRK12901 secA preprotein trans 99.6 1.5E-14 3.2E-19 145.1 18.2 127 314-446 608-745 (1112)
153 KOG1002 Nucleotide excision re 99.6 2.2E-14 4.8E-19 131.0 16.5 129 318-449 620-756 (791)
154 smart00490 HELICc helicase sup 99.6 6.1E-15 1.3E-19 108.0 7.4 81 347-430 2-82 (82)
155 KOG4439 RNA polymerase II tran 99.6 2.4E-13 5.2E-18 129.3 19.4 115 331-448 745-864 (901)
156 smart00488 DEXDc2 DEAD-like he 99.5 1.6E-13 3.4E-18 124.6 10.3 79 46-125 5-85 (289)
157 smart00489 DEXDc3 DEAD-like he 99.5 1.6E-13 3.4E-18 124.6 10.3 79 46-125 5-85 (289)
158 TIGR02562 cas3_yersinia CRISPR 99.5 5.8E-12 1.2E-16 127.5 21.2 339 50-431 408-881 (1110)
159 KOG1015 Transcription regulato 99.5 2.9E-12 6.2E-17 125.6 18.2 129 319-447 1127-1282(1567)
160 PF06862 DUF1253: Protein of u 99.5 3.2E-11 6.9E-16 113.0 24.4 254 171-443 130-416 (442)
161 PRK14873 primosome assembly pr 99.4 4.5E-12 9.7E-17 126.6 18.5 105 73-209 164-269 (665)
162 PF02399 Herpes_ori_bp: Origin 99.4 3.4E-11 7.4E-16 118.8 23.0 134 321-464 270-412 (824)
163 COG0610 Type I site-specific r 99.4 1.2E-11 2.5E-16 129.2 20.7 114 69-209 273-388 (962)
164 COG0553 HepA Superfamily II DN 99.4 7.1E-12 1.5E-16 133.8 16.6 128 318-448 692-828 (866)
165 PF07652 Flavi_DEAD: Flaviviru 99.3 9.7E-12 2.1E-16 96.8 10.5 105 68-209 3-107 (148)
166 PF00176 SNF2_N: SNF2 family N 99.3 1.4E-11 3E-16 114.3 9.1 130 54-209 1-146 (299)
167 COG0653 SecA Preprotein transl 99.3 7.7E-11 1.7E-15 117.1 14.2 352 50-443 80-546 (822)
168 KOG2340 Uncharacterized conser 99.2 5.6E-10 1.2E-14 103.5 17.5 372 49-443 215-669 (698)
169 KOG1133 Helicase of the DEAD s 99.1 6.5E-08 1.4E-12 93.1 23.1 111 331-444 628-782 (821)
170 PF07517 SecA_DEAD: SecA DEAD- 99.0 5.4E-09 1.2E-13 92.3 13.2 131 46-210 74-210 (266)
171 PRK15483 type III restriction- 99.0 2E-08 4.4E-13 102.5 18.4 45 385-429 501-545 (986)
172 KOG1131 RNA polymerase II tran 98.9 7.1E-08 1.5E-12 89.7 17.8 77 46-122 12-88 (755)
173 PF13307 Helicase_C_2: Helicas 98.9 2.7E-09 5.8E-14 88.9 7.0 115 330-448 7-156 (167)
174 KOG0921 Dosage compensation co 98.8 1.1E-08 2.5E-13 100.6 9.3 110 331-441 642-773 (1282)
175 KOG1016 Predicted DNA helicase 98.8 5.9E-07 1.3E-11 87.5 19.2 108 332-439 719-844 (1387)
176 PF13086 AAA_11: AAA domain; P 98.7 3.2E-08 6.8E-13 88.3 8.2 68 51-123 2-75 (236)
177 KOG0952 DNA/RNA helicase MER3/ 98.5 3.8E-08 8.3E-13 98.8 2.1 132 49-209 926-1058(1230)
178 KOG1802 RNA helicase nonsense 98.5 5.3E-07 1.1E-11 86.5 8.3 86 42-138 402-487 (935)
179 KOG1132 Helicase of the DEAD s 98.5 5.5E-07 1.2E-11 89.3 8.4 161 45-209 17-259 (945)
180 KOG1001 Helicase-like transcri 98.5 3.6E-07 7.7E-12 91.4 7.2 129 317-448 521-656 (674)
181 COG3587 Restriction endonuclea 98.3 1.7E-05 3.7E-10 78.8 13.8 46 384-429 482-527 (985)
182 TIGR00596 rad1 DNA repair prot 98.2 5.1E-06 1.1E-10 85.2 9.5 55 169-224 4-58 (814)
183 PF13604 AAA_30: AAA domain; P 98.2 7.6E-06 1.7E-10 70.2 9.1 64 50-120 1-65 (196)
184 KOG1803 DNA helicase [Replicat 98.2 5.5E-06 1.2E-10 79.2 8.7 67 49-122 184-250 (649)
185 smart00492 HELICc3 helicase su 98.2 6.7E-06 1.4E-10 65.9 7.7 73 369-441 31-137 (141)
186 PF13872 AAA_34: P-loop contai 98.2 9.8E-06 2.1E-10 72.1 8.9 134 50-212 37-187 (303)
187 PF02562 PhoH: PhoH-like prote 98.2 1.6E-06 3.4E-11 73.7 3.8 59 49-113 3-61 (205)
188 smart00491 HELICc2 helicase su 98.2 6.9E-06 1.5E-10 66.0 7.0 70 373-442 32-139 (142)
189 TIGR00376 DNA helicase, putati 98.1 1.9E-05 4.1E-10 79.9 11.7 69 49-124 156-224 (637)
190 PF12340 DUF3638: Protein of u 98.1 4.9E-05 1.1E-09 65.2 12.0 123 45-187 19-145 (229)
191 PF09848 DUF2075: Uncharacteri 98.1 1E-05 2.2E-10 76.5 8.0 95 71-211 3-97 (352)
192 PF13245 AAA_19: Part of AAA d 98.1 1.8E-05 3.9E-10 55.9 7.1 53 69-121 10-62 (76)
193 COG3421 Uncharacterized protei 97.7 0.0014 3.1E-08 63.0 15.3 120 73-212 1-127 (812)
194 PF00580 UvrD-helicase: UvrD/R 97.7 9.3E-05 2E-09 69.1 7.6 70 51-126 1-70 (315)
195 KOG0383 Predicted helicase [Ge 97.7 3.7E-06 8E-11 83.3 -2.3 79 316-398 613-696 (696)
196 PRK10536 hypothetical protein; 97.7 7.9E-05 1.7E-09 65.3 5.5 60 47-112 56-115 (262)
197 PRK10875 recD exonuclease V su 97.7 0.00029 6.3E-09 70.7 10.2 69 52-125 154-223 (615)
198 TIGR01448 recD_rel helicase, p 97.6 0.00054 1.2E-08 70.7 11.0 68 44-118 318-385 (720)
199 PRK10919 ATP-dependent DNA hel 97.6 0.00022 4.7E-09 73.2 8.1 70 50-125 2-71 (672)
200 KOG1805 DNA replication helica 97.5 0.001 2.3E-08 67.5 11.9 151 35-209 658-808 (1100)
201 TIGR01447 recD exodeoxyribonuc 97.5 0.00058 1.3E-08 68.4 10.2 67 53-124 148-216 (586)
202 TIGR01075 uvrD DNA helicase II 97.5 0.00035 7.7E-09 72.6 8.7 72 49-126 3-74 (715)
203 PRK11773 uvrD DNA-dependent he 97.5 0.00036 7.8E-09 72.5 8.2 72 49-126 8-79 (721)
204 PRK11054 helD DNA helicase IV; 97.3 0.00093 2E-08 68.2 9.4 83 49-137 195-277 (684)
205 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0033 7.1E-08 65.3 13.0 61 50-117 352-412 (744)
206 PRK12723 flagellar biosynthesi 97.3 0.0022 4.8E-08 60.6 10.7 40 69-108 174-213 (388)
207 PRK13889 conjugal transfer rel 97.3 0.0029 6.3E-08 66.8 12.2 64 46-117 343-406 (988)
208 PRK06526 transposase; Provisio 97.2 0.0014 3.1E-08 58.4 8.4 38 68-109 97-134 (254)
209 TIGR01074 rep ATP-dependent DN 97.2 0.0011 2.4E-08 68.6 8.8 70 51-126 2-71 (664)
210 PF13401 AAA_22: AAA domain; P 97.2 0.0036 7.8E-08 49.8 9.6 21 68-88 3-23 (131)
211 KOG0989 Replication factor C, 97.2 0.00097 2.1E-08 59.1 6.2 37 54-90 40-78 (346)
212 PRK08181 transposase; Validate 97.2 0.0032 6.9E-08 56.6 9.6 74 22-117 75-149 (269)
213 PF05970 PIF1: PIF1-like helic 97.1 0.0011 2.4E-08 62.9 6.8 61 51-115 2-64 (364)
214 PRK04296 thymidine kinase; Pro 97.1 0.001 2.2E-08 56.8 5.9 38 69-110 2-39 (190)
215 COG1484 DnaC DNA replication p 97.1 0.0018 4E-08 57.8 7.8 50 68-122 104-153 (254)
216 PRK13826 Dtr system oriT relax 97.1 0.0072 1.6E-07 64.4 12.8 75 35-117 367-441 (1102)
217 PF13871 Helicase_C_4: Helicas 97.1 0.00087 1.9E-08 59.6 5.1 59 376-434 52-118 (278)
218 TIGR01073 pcrA ATP-dependent D 97.0 0.0017 3.6E-08 67.8 7.3 72 49-126 3-74 (726)
219 COG1419 FlhF Flagellar GTP-bin 96.9 0.0043 9.2E-08 57.9 7.9 77 69-148 203-279 (407)
220 cd00009 AAA The AAA+ (ATPases 96.9 0.0069 1.5E-07 49.0 8.6 38 69-110 19-56 (151)
221 PRK06921 hypothetical protein; 96.5 0.012 2.6E-07 53.0 8.2 38 69-109 117-154 (266)
222 PF03354 Terminase_1: Phage Te 96.5 0.0099 2.1E-07 58.7 8.1 75 53-127 1-80 (477)
223 KOG0298 DEAD box-containing he 96.4 0.0082 1.8E-07 63.0 7.1 120 68-210 373-525 (1394)
224 TIGR03499 FlhF flagellar biosy 96.4 0.014 3E-07 53.2 7.8 38 69-108 194-231 (282)
225 COG1435 Tdk Thymidine kinase [ 96.3 0.011 2.4E-07 49.2 5.9 105 69-224 4-108 (201)
226 PF00308 Bac_DnaA: Bacterial d 96.3 0.055 1.2E-06 47.3 10.6 48 70-120 35-82 (219)
227 PF14617 CMS1: U3-containing 9 96.2 0.012 2.7E-07 51.7 6.4 86 100-207 125-211 (252)
228 cd01124 KaiC KaiC is a circadi 96.1 0.076 1.7E-06 45.1 10.8 48 72-124 2-49 (187)
229 PRK07952 DNA replication prote 96.1 0.026 5.7E-07 49.9 7.8 34 70-107 100-133 (244)
230 PRK12377 putative replication 96.1 0.022 4.7E-07 50.6 7.3 46 69-119 101-146 (248)
231 smart00382 AAA ATPases associa 96.1 0.0064 1.4E-07 48.8 3.7 42 69-114 2-43 (148)
232 PF01695 IstB_IS21: IstB-like 96.1 0.014 3E-07 49.1 5.7 46 66-116 44-89 (178)
233 TIGR02785 addA_Gpos recombinat 96.0 0.05 1.1E-06 60.2 11.4 69 51-126 2-70 (1232)
234 PRK14974 cell division protein 96.0 0.091 2E-06 48.9 11.2 49 70-122 141-192 (336)
235 PF00448 SRP54: SRP54-type pro 96.0 0.041 8.9E-07 47.1 8.2 60 71-138 3-65 (196)
236 PRK14956 DNA polymerase III su 95.9 0.015 3.2E-07 56.3 5.9 18 71-88 42-59 (484)
237 PTZ00112 origin recognition co 95.9 0.064 1.4E-06 55.3 10.5 38 51-88 759-800 (1164)
238 COG4626 Phage terminase-like p 95.9 0.097 2.1E-06 50.9 11.2 79 50-128 61-145 (546)
239 cd01120 RecA-like_NTPases RecA 95.9 0.17 3.7E-06 41.6 11.7 38 72-113 2-39 (165)
240 PF05496 RuvB_N: Holliday junc 95.9 0.015 3.2E-07 50.0 5.0 18 70-87 51-68 (233)
241 PRK14712 conjugal transfer nic 95.9 0.048 1E-06 60.4 10.0 65 50-117 835-900 (1623)
242 PRK14722 flhF flagellar biosyn 95.8 0.04 8.7E-07 51.8 8.1 72 68-142 136-207 (374)
243 PF02456 Adeno_IVa2: Adenoviru 95.8 0.042 9E-07 49.1 7.5 38 72-114 90-130 (369)
244 PRK05642 DNA replication initi 95.8 0.073 1.6E-06 47.1 9.2 36 70-109 46-81 (234)
245 PRK05703 flhF flagellar biosyn 95.7 0.045 9.7E-07 52.9 8.3 38 69-108 221-258 (424)
246 PRK14087 dnaA chromosomal repl 95.7 0.089 1.9E-06 51.4 10.4 49 70-121 142-190 (450)
247 TIGR02881 spore_V_K stage V sp 95.7 0.031 6.6E-07 50.5 6.8 20 69-88 42-61 (261)
248 PRK00149 dnaA chromosomal repl 95.7 0.083 1.8E-06 51.9 10.1 45 70-117 149-193 (450)
249 PRK06893 DNA replication initi 95.6 0.074 1.6E-06 46.9 8.8 36 70-109 40-75 (229)
250 PRK09183 transposase/IS protei 95.6 0.31 6.7E-06 43.8 12.8 73 22-116 72-144 (259)
251 PRK14964 DNA polymerase III su 95.6 0.025 5.4E-07 55.3 5.9 20 69-88 35-54 (491)
252 PRK08727 hypothetical protein; 95.6 0.07 1.5E-06 47.2 8.3 35 70-108 42-76 (233)
253 PRK11889 flhF flagellar biosyn 95.5 0.074 1.6E-06 50.0 8.5 35 70-108 242-276 (436)
254 COG3973 Superfamily I DNA and 95.5 0.059 1.3E-06 52.6 8.0 91 34-126 189-285 (747)
255 PRK13709 conjugal transfer nic 95.5 0.088 1.9E-06 59.2 10.5 65 50-117 967-1032(1747)
256 CHL00181 cbbX CbbX; Provisiona 95.5 0.058 1.3E-06 49.2 7.8 21 69-89 59-79 (287)
257 PRK10917 ATP-dependent DNA hel 95.5 0.072 1.6E-06 55.2 9.3 83 331-413 309-393 (681)
258 PF05621 TniB: Bacterial TniB 95.4 0.078 1.7E-06 47.8 8.1 44 42-85 31-77 (302)
259 PRK14086 dnaA chromosomal repl 95.4 0.19 4.2E-06 50.3 11.5 46 70-118 315-360 (617)
260 TIGR03420 DnaA_homol_Hda DnaA 95.4 0.11 2.3E-06 45.8 9.1 21 68-88 37-57 (226)
261 PRK08084 DNA replication initi 95.4 0.12 2.7E-06 45.7 9.4 37 69-109 45-81 (235)
262 PLN03025 replication factor C 95.4 0.09 1.9E-06 49.1 8.9 19 70-88 35-53 (319)
263 TIGR02760 TraI_TIGR conjugativ 95.3 0.12 2.5E-06 59.7 11.1 65 50-120 429-493 (1960)
264 cd01122 GP4d_helicase GP4d_hel 95.3 0.096 2.1E-06 47.6 8.8 53 66-122 27-79 (271)
265 TIGR00362 DnaA chromosomal rep 95.3 0.13 2.9E-06 49.8 10.1 38 70-109 137-174 (405)
266 PRK11823 DNA repair protein Ra 95.3 0.074 1.6E-06 51.9 8.2 54 66-124 77-130 (446)
267 KOG0738 AAA+-type ATPase [Post 95.3 0.038 8.3E-07 50.9 5.6 47 62-116 237-284 (491)
268 COG1474 CDC6 Cdc6-related prot 95.3 0.094 2E-06 49.6 8.5 27 70-97 43-69 (366)
269 COG1110 Reverse gyrase [DNA re 95.3 0.073 1.6E-06 55.2 8.1 88 323-411 116-211 (1187)
270 COG2805 PilT Tfp pilus assembl 95.2 0.097 2.1E-06 46.8 7.8 27 71-98 127-153 (353)
271 PRK14873 primosome assembly pr 95.2 0.17 3.7E-06 51.8 10.6 94 317-412 171-266 (665)
272 KOG0991 Replication factor C, 95.2 0.082 1.8E-06 45.3 6.9 20 68-87 47-66 (333)
273 COG4962 CpaF Flp pilus assembl 95.2 0.045 9.8E-07 49.9 5.8 61 47-115 154-214 (355)
274 PRK07994 DNA polymerase III su 95.1 0.062 1.4E-06 54.4 7.3 17 72-88 41-57 (647)
275 PHA03333 putative ATPase subun 95.1 0.39 8.4E-06 48.4 12.5 72 52-127 171-242 (752)
276 PHA02533 17 large terminase pr 95.1 0.096 2.1E-06 52.1 8.5 71 50-126 59-129 (534)
277 cd01121 Sms Sms (bacterial rad 95.1 0.099 2.1E-06 49.5 8.3 52 68-124 81-132 (372)
278 PRK13894 conjugal transfer ATP 95.1 0.064 1.4E-06 49.6 6.7 66 41-113 125-190 (319)
279 PRK07003 DNA polymerase III su 95.1 0.13 2.8E-06 52.5 9.2 19 70-88 39-57 (830)
280 PRK08116 hypothetical protein; 95.1 0.094 2E-06 47.4 7.6 43 70-117 115-157 (268)
281 PRK06645 DNA polymerase III su 95.0 0.066 1.4E-06 52.8 7.0 19 70-88 44-62 (507)
282 TIGR00595 priA primosomal prot 95.0 0.17 3.7E-06 50.3 9.8 79 331-412 24-102 (505)
283 PRK09376 rho transcription ter 94.9 0.19 4E-06 47.4 9.2 41 54-96 155-195 (416)
284 PRK14962 DNA polymerase III su 94.9 0.099 2.1E-06 51.3 7.8 19 70-88 37-55 (472)
285 KOG1513 Nuclear helicase MOP-3 94.8 0.02 4.2E-07 57.3 2.8 80 50-133 264-349 (1300)
286 TIGR01547 phage_term_2 phage t 94.8 0.13 2.7E-06 49.8 8.4 59 71-130 3-62 (396)
287 PRK14960 DNA polymerase III su 94.8 0.12 2.7E-06 51.9 8.2 19 70-88 38-56 (702)
288 PRK05580 primosome assembly pr 94.8 0.2 4.4E-06 51.8 10.1 79 331-412 189-267 (679)
289 PRK14088 dnaA chromosomal repl 94.8 0.43 9.4E-06 46.6 11.9 38 70-109 131-168 (440)
290 PRK06835 DNA replication prote 94.7 0.36 7.7E-06 45.0 10.7 46 68-118 182-227 (329)
291 PRK08939 primosomal protein Dn 94.7 0.13 2.8E-06 47.4 7.7 36 69-108 156-191 (306)
292 PF05127 Helicase_RecD: Helica 94.7 0.012 2.6E-07 48.9 0.8 53 73-128 1-53 (177)
293 TIGR00643 recG ATP-dependent D 94.7 0.14 3.1E-06 52.5 8.8 83 331-413 283-367 (630)
294 PRK12726 flagellar biosynthesi 94.7 0.094 2E-06 49.1 6.6 37 68-108 205-241 (407)
295 PF06733 DEAD_2: DEAD_2; Inte 94.7 0.016 3.5E-07 48.6 1.6 48 162-210 109-158 (174)
296 TIGR00767 rho transcription te 94.6 0.19 4.1E-06 47.5 8.4 23 63-85 162-184 (415)
297 PRK00411 cdc6 cell division co 94.6 0.12 2.6E-06 49.9 7.6 19 69-87 55-73 (394)
298 PF13173 AAA_14: AAA domain 94.5 0.39 8.4E-06 37.9 9.1 25 198-224 62-86 (128)
299 PRK14958 DNA polymerase III su 94.5 0.065 1.4E-06 53.1 5.6 19 70-88 39-57 (509)
300 PHA03368 DNA packaging termina 94.5 0.42 9.1E-06 48.0 10.9 108 9-126 192-309 (738)
301 COG1444 Predicted P-loop ATPas 94.5 0.7 1.5E-05 47.3 12.6 78 51-130 212-290 (758)
302 PRK14949 DNA polymerase III su 94.4 0.078 1.7E-06 55.1 5.9 17 72-88 41-57 (944)
303 PRK14723 flhF flagellar biosyn 94.4 0.21 4.6E-06 51.4 9.0 62 69-134 185-247 (767)
304 TIGR02012 tigrfam_recA protein 94.4 0.12 2.7E-06 47.5 6.6 45 66-114 52-96 (321)
305 PRK11331 5-methylcytosine-spec 94.3 0.11 2.4E-06 49.8 6.5 28 60-87 185-212 (459)
306 cd00983 recA RecA is a bacter 94.3 0.11 2.3E-06 48.0 6.1 46 66-115 52-97 (325)
307 TIGR02928 orc1/cdc6 family rep 94.2 0.098 2.1E-06 49.9 6.1 26 69-95 40-65 (365)
308 PRK14955 DNA polymerase III su 94.2 0.16 3.4E-06 49.0 7.4 19 70-88 39-57 (397)
309 TIGR03015 pepcterm_ATPase puta 94.2 0.081 1.8E-06 48.0 5.2 37 51-87 24-61 (269)
310 KOG0701 dsRNA-specific nucleas 94.2 0.027 5.8E-07 61.7 2.2 96 333-430 293-399 (1606)
311 TIGR02782 TrbB_P P-type conjug 94.2 0.2 4.3E-06 46.1 7.7 58 51-113 117-174 (299)
312 PRK13833 conjugal transfer pro 94.2 0.11 2.4E-06 48.0 6.0 59 50-113 128-186 (323)
313 TIGR03877 thermo_KaiC_1 KaiC d 94.2 0.1 2.2E-06 46.3 5.6 52 68-124 20-71 (237)
314 TIGR02760 TraI_TIGR conjugativ 94.1 0.21 4.6E-06 57.6 9.2 64 49-117 1018-1084(1960)
315 PRK14961 DNA polymerase III su 94.1 0.16 3.6E-06 48.2 7.2 18 71-88 40-57 (363)
316 PRK09111 DNA polymerase III su 94.0 0.12 2.6E-06 52.2 6.3 19 70-88 47-65 (598)
317 PRK08691 DNA polymerase III su 94.0 0.15 3.3E-06 51.7 6.9 19 70-88 39-57 (709)
318 PF06745 KaiC: KaiC; InterPro 93.9 0.11 2.4E-06 45.7 5.4 53 68-124 18-70 (226)
319 PRK12422 chromosomal replicati 93.9 0.31 6.7E-06 47.5 8.8 36 70-109 142-177 (445)
320 PF06309 Torsin: Torsin; Inte 93.9 0.52 1.1E-05 36.6 8.1 51 73-124 57-112 (127)
321 PRK06067 flagellar accessory p 93.8 0.3 6.6E-06 43.2 8.0 52 68-124 24-75 (234)
322 PRK09354 recA recombinase A; P 93.8 0.17 3.6E-06 47.1 6.4 43 68-114 59-101 (349)
323 PRK14957 DNA polymerase III su 93.8 0.18 3.9E-06 50.2 7.1 18 71-88 40-57 (546)
324 TIGR00580 mfd transcription-re 93.8 0.4 8.6E-06 51.2 10.0 83 331-413 499-583 (926)
325 COG0593 DnaA ATPase involved i 93.8 0.38 8.2E-06 45.7 8.8 40 69-110 113-152 (408)
326 COG1198 PriA Primosomal protei 93.8 0.29 6.3E-06 50.2 8.6 95 314-411 225-321 (730)
327 PRK14963 DNA polymerase III su 93.8 0.21 4.6E-06 49.4 7.4 19 70-88 37-55 (504)
328 PRK14965 DNA polymerase III su 93.8 0.13 2.8E-06 52.0 6.1 19 70-88 39-57 (576)
329 PHA02544 44 clamp loader, smal 93.7 0.68 1.5E-05 43.1 10.6 26 197-222 100-125 (316)
330 cd01394 radB RadB. The archaea 93.7 0.28 6.1E-06 42.9 7.6 37 68-108 18-54 (218)
331 PRK04195 replication factor C 93.7 0.3 6.6E-06 48.4 8.4 19 69-87 39-57 (482)
332 PRK07764 DNA polymerase III su 93.6 0.18 3.9E-06 52.9 6.9 20 70-89 38-57 (824)
333 PRK13342 recombination factor 93.6 0.24 5.2E-06 48.1 7.4 18 70-87 37-54 (413)
334 PRK06995 flhF flagellar biosyn 93.4 0.28 6.1E-06 47.9 7.5 23 69-91 256-278 (484)
335 COG2804 PulE Type II secretory 93.4 0.13 2.8E-06 49.6 5.0 42 52-97 243-285 (500)
336 PRK05563 DNA polymerase III su 93.4 0.4 8.7E-06 48.3 8.8 19 70-88 39-57 (559)
337 PF13177 DNA_pol3_delta2: DNA 93.4 0.36 7.8E-06 39.9 7.1 19 70-88 20-38 (162)
338 PRK14959 DNA polymerase III su 93.4 0.097 2.1E-06 52.6 4.3 19 70-88 39-57 (624)
339 KOG0744 AAA+-type ATPase [Post 93.3 0.54 1.2E-05 42.6 8.3 129 68-208 176-320 (423)
340 PRK08699 DNA polymerase III su 93.3 1 2.3E-05 41.9 10.8 38 51-88 2-40 (325)
341 PRK05973 replicative DNA helic 93.3 0.3 6.5E-06 42.9 6.8 85 35-124 25-114 (237)
342 PRK14952 DNA polymerase III su 93.3 0.22 4.8E-06 50.1 6.7 17 72-88 38-54 (584)
343 PRK10689 transcription-repair 93.2 0.32 7E-06 53.1 8.2 81 331-411 648-730 (1147)
344 TIGR03878 thermo_KaiC_2 KaiC d 93.2 0.3 6.4E-06 44.0 6.8 37 68-108 35-71 (259)
345 KOG1807 Helicases [Replication 93.2 0.15 3.2E-06 51.2 5.1 70 50-123 378-449 (1025)
346 PRK00771 signal recognition pa 93.1 0.38 8.2E-06 46.6 7.8 35 70-108 96-130 (437)
347 PRK12323 DNA polymerase III su 93.1 0.39 8.5E-06 48.4 8.0 19 70-88 39-57 (700)
348 cd01130 VirB11-like_ATPase Typ 93.1 0.28 6.1E-06 41.6 6.3 33 50-85 9-41 (186)
349 PRK12724 flagellar biosynthesi 93.0 0.44 9.5E-06 45.5 7.9 36 70-108 224-259 (432)
350 COG1200 RecG RecG-like helicas 93.0 0.58 1.3E-05 46.9 8.9 93 316-411 294-392 (677)
351 KOG2028 ATPase related to the 92.9 0.21 4.7E-06 45.8 5.4 17 70-86 163-179 (554)
352 PRK14951 DNA polymerase III su 92.9 0.41 8.8E-06 48.5 8.0 19 70-88 39-57 (618)
353 PRK05896 DNA polymerase III su 92.8 0.11 2.4E-06 51.9 3.8 19 70-88 39-57 (605)
354 PRK14969 DNA polymerase III su 92.8 0.28 6.1E-06 49.0 6.7 18 71-88 40-57 (527)
355 PRK14721 flhF flagellar biosyn 92.8 0.44 9.6E-06 45.7 7.7 67 68-137 190-256 (420)
356 cd01128 rho_factor Transcripti 92.7 0.55 1.2E-05 41.8 7.8 21 65-85 12-32 (249)
357 PRK14954 DNA polymerase III su 92.7 0.25 5.4E-06 50.1 6.2 19 70-88 39-57 (620)
358 PRK14950 DNA polymerase III su 92.7 0.42 9.2E-06 48.6 7.9 19 70-88 39-57 (585)
359 PRK05707 DNA polymerase III su 92.7 1.3 2.8E-05 41.3 10.5 38 51-88 4-41 (328)
360 TIGR02640 gas_vesic_GvpN gas v 92.6 0.094 2E-06 47.3 2.9 35 53-87 5-39 (262)
361 PRK13900 type IV secretion sys 92.5 0.15 3.3E-06 47.6 4.1 41 68-113 159-199 (332)
362 TIGR00064 ftsY signal recognit 92.5 0.83 1.8E-05 41.4 8.7 35 70-108 73-107 (272)
363 cd00984 DnaB_C DnaB helicase C 92.4 0.43 9.3E-06 42.5 6.9 45 62-109 6-50 (242)
364 KOG0344 ATP-dependent RNA heli 92.4 1 2.3E-05 44.0 9.5 104 76-209 364-468 (593)
365 PF05876 Terminase_GpA: Phage 92.3 0.13 2.9E-06 51.6 3.8 74 49-127 15-89 (557)
366 PRK04328 hypothetical protein; 92.3 0.3 6.5E-06 43.7 5.6 52 68-124 22-73 (249)
367 PRK12727 flagellar biosynthesi 92.3 0.53 1.1E-05 46.3 7.5 40 67-108 348-387 (559)
368 PHA02244 ATPase-like protein 92.3 0.12 2.5E-06 48.3 3.0 26 62-87 112-137 (383)
369 COG1074 RecB ATP-dependent exo 92.2 0.28 6.1E-06 53.9 6.3 57 68-124 15-72 (1139)
370 PRK08769 DNA polymerase III su 92.1 1.2 2.5E-05 41.3 9.3 40 48-87 2-44 (319)
371 PRK13851 type IV secretion sys 92.1 0.18 4E-06 47.1 4.2 41 68-113 161-201 (344)
372 COG0467 RAD55 RecA-superfamily 92.1 0.33 7.1E-06 43.8 5.7 55 67-126 21-75 (260)
373 COG0210 UvrD Superfamily I DNA 92.0 0.39 8.4E-06 49.9 6.9 71 50-126 2-72 (655)
374 COG1875 NYN ribonuclease and A 92.0 0.29 6.3E-06 45.1 5.0 66 44-114 222-289 (436)
375 KOG0058 Peptide exporter, ABC 91.9 0.22 4.7E-06 50.1 4.6 165 47-226 472-651 (716)
376 COG1219 ClpX ATP-dependent pro 91.9 0.13 2.8E-06 46.4 2.7 19 69-87 97-115 (408)
377 PF01443 Viral_helicase1: Vira 91.8 0.11 2.4E-06 45.9 2.3 14 72-85 1-14 (234)
378 TIGR00678 holB DNA polymerase 91.7 1.3 2.8E-05 37.7 8.7 19 70-88 15-33 (188)
379 PRK10416 signal recognition pa 91.7 1.8 3.9E-05 40.2 10.1 36 69-108 114-149 (318)
380 TIGR02784 addA_alphas double-s 91.7 0.7 1.5E-05 51.2 8.7 57 69-126 10-66 (1141)
381 PRK08533 flagellar accessory p 91.6 0.44 9.5E-06 42.0 5.8 52 68-124 23-74 (230)
382 PRK10867 signal recognition pa 91.6 2 4.4E-05 41.6 10.6 59 70-135 101-162 (433)
383 PF12846 AAA_10: AAA-like doma 91.5 0.26 5.7E-06 45.4 4.6 41 69-113 1-41 (304)
384 TIGR00959 ffh signal recogniti 91.4 1.9 4.2E-05 41.7 10.3 35 71-108 101-135 (428)
385 TIGR00416 sms DNA repair prote 91.4 0.74 1.6E-05 45.1 7.6 54 66-124 91-144 (454)
386 TIGR02524 dot_icm_DotB Dot/Icm 91.3 0.31 6.7E-06 46.0 4.7 28 68-96 133-160 (358)
387 COG0552 FtsY Signal recognitio 91.2 1.5 3.2E-05 40.2 8.6 58 70-134 140-199 (340)
388 TIGR02397 dnaX_nterm DNA polym 91.1 1.2 2.7E-05 42.2 8.9 18 70-87 37-54 (355)
389 TIGR01425 SRP54_euk signal rec 91.1 1.6 3.5E-05 42.1 9.3 62 70-138 101-164 (429)
390 PRK06964 DNA polymerase III su 91.1 1.2 2.6E-05 41.7 8.4 38 51-88 2-40 (342)
391 TIGR02639 ClpA ATP-dependent C 91.1 0.73 1.6E-05 48.3 7.7 35 53-87 185-221 (731)
392 PF03237 Terminase_6: Terminas 91.1 1.6 3.5E-05 41.5 9.8 42 73-116 1-42 (384)
393 cd01393 recA_like RecA is a b 91.0 0.52 1.1E-05 41.4 5.7 45 66-110 16-62 (226)
394 PRK06305 DNA polymerase III su 90.9 0.68 1.5E-05 45.3 6.8 19 70-88 40-58 (451)
395 PF03796 DnaB_C: DnaB-like hel 90.9 1.1 2.3E-05 40.4 7.8 47 61-110 11-57 (259)
396 PRK06647 DNA polymerase III su 90.9 0.52 1.1E-05 47.4 6.1 19 70-88 39-57 (563)
397 PRK08451 DNA polymerase III su 90.8 0.84 1.8E-05 45.4 7.4 19 70-88 37-55 (535)
398 PRK06731 flhF flagellar biosyn 90.7 1.5 3.3E-05 39.5 8.4 47 69-119 75-124 (270)
399 PF10593 Z1: Z1 domain; Inter 90.7 0.38 8.2E-06 42.5 4.5 82 360-447 111-198 (239)
400 PRK14970 DNA polymerase III su 90.7 0.94 2E-05 43.2 7.5 18 70-87 40-57 (367)
401 COG1132 MdlB ABC-type multidru 90.6 0.42 9.1E-06 48.7 5.4 150 66-223 352-509 (567)
402 TIGR03881 KaiC_arch_4 KaiC dom 90.6 0.58 1.3E-05 41.2 5.6 54 66-124 17-70 (229)
403 PRK07133 DNA polymerase III su 90.5 0.39 8.5E-06 49.2 4.9 19 70-88 41-59 (725)
404 COG0466 Lon ATP-dependent Lon 90.4 1.3 2.7E-05 44.9 8.1 50 174-227 397-447 (782)
405 PRK13341 recombination factor 90.4 0.94 2E-05 47.0 7.7 18 70-87 53-70 (725)
406 cd01126 TraG_VirD4 The TraG/Tr 90.4 0.23 4.9E-06 47.8 3.0 48 71-124 1-48 (384)
407 TIGR03880 KaiC_arch_3 KaiC dom 90.3 0.7 1.5E-05 40.6 5.8 52 68-124 15-66 (224)
408 COG1197 Mfd Transcription-repa 90.2 1.8 3.8E-05 46.4 9.4 80 331-410 642-723 (1139)
409 CHL00095 clpC Clp protease ATP 90.2 0.28 6.1E-06 52.1 3.8 34 54-87 513-557 (821)
410 cd03115 SRP The signal recogni 90.2 2.2 4.7E-05 35.6 8.6 33 72-108 3-35 (173)
411 PRK13897 type IV secretion sys 90.1 0.4 8.7E-06 48.5 4.6 50 69-124 158-207 (606)
412 cd01131 PilT Pilus retraction 90.1 0.46 1E-05 40.8 4.5 36 72-110 4-39 (198)
413 cd00079 HELICc Helicase superf 90.1 5.8 0.00013 30.8 10.7 79 100-207 27-106 (131)
414 KOG0331 ATP-dependent RNA heli 90.1 2.3 4.9E-05 41.8 9.4 93 79-203 322-415 (519)
415 KOG1132 Helicase of the DEAD s 90.0 2.5 5.5E-05 43.7 9.9 82 331-413 560-655 (945)
416 PRK06871 DNA polymerase III su 90.0 2.6 5.7E-05 39.1 9.5 38 51-88 3-43 (325)
417 PRK14971 DNA polymerase III su 90.0 0.93 2E-05 46.2 7.1 18 70-87 40-57 (614)
418 COG2256 MGS1 ATPase related to 89.9 1.4 3E-05 41.4 7.5 19 70-88 49-67 (436)
419 KOG1513 Nuclear helicase MOP-3 89.8 0.34 7.3E-06 49.0 3.7 54 378-431 850-911 (1300)
420 PF00437 T2SE: Type II/IV secr 89.7 0.27 5.9E-06 44.6 2.9 42 68-113 126-167 (270)
421 TIGR02237 recomb_radB DNA repa 89.7 0.5 1.1E-05 41.0 4.4 39 68-110 11-49 (209)
422 PF13555 AAA_29: P-loop contai 89.7 0.5 1.1E-05 31.6 3.3 25 69-95 23-47 (62)
423 PF02534 T4SS-DNA_transf: Type 89.7 0.41 8.9E-06 47.4 4.3 50 70-125 45-94 (469)
424 cd01129 PulE-GspE PulE/GspE Th 89.7 0.82 1.8E-05 41.2 5.8 47 42-94 58-104 (264)
425 COG0470 HolB ATPase involved i 89.6 2.1 4.6E-05 39.9 9.0 20 69-88 23-43 (325)
426 PRK14701 reverse gyrase; Provi 89.6 1.2 2.7E-05 50.4 8.3 64 331-394 121-187 (1638)
427 KOG0739 AAA+-type ATPase [Post 89.6 1.4 3.1E-05 39.5 6.9 47 70-124 167-213 (439)
428 PHA00350 putative assembly pro 89.6 0.91 2E-05 43.2 6.3 25 72-96 4-29 (399)
429 PRK12608 transcription termina 89.6 2.9 6.2E-05 39.5 9.4 33 53-86 118-150 (380)
430 KOG0298 DEAD box-containing he 89.5 0.56 1.2E-05 50.1 5.2 96 331-434 1220-1316(1394)
431 TIGR03819 heli_sec_ATPase heli 89.5 1 2.3E-05 42.2 6.6 64 40-113 154-217 (340)
432 PRK10436 hypothetical protein; 89.3 0.46 1E-05 46.4 4.2 47 43-95 197-243 (462)
433 PHA00012 I assembly protein 89.3 0.67 1.5E-05 42.3 4.8 26 72-97 4-29 (361)
434 PF01078 Mg_chelatase: Magnesi 89.2 0.17 3.7E-06 43.1 1.1 31 55-85 8-38 (206)
435 TIGR00631 uvrb excinuclease AB 88.9 3.6 7.9E-05 42.4 10.4 91 90-209 431-522 (655)
436 PRK14953 DNA polymerase III su 88.9 0.51 1.1E-05 46.6 4.2 17 72-88 41-57 (486)
437 PF01580 FtsK_SpoIIIE: FtsK/Sp 88.6 0.61 1.3E-05 40.3 4.2 27 69-95 38-64 (205)
438 PF13191 AAA_16: AAA ATPase do 88.6 0.75 1.6E-05 38.8 4.7 29 68-97 23-51 (185)
439 TIGR02525 plasmid_TraJ plasmid 88.6 0.74 1.6E-05 43.6 4.9 38 69-108 149-186 (372)
440 PF13481 AAA_25: AAA domain; P 88.5 1.1 2.3E-05 38.3 5.6 58 68-126 31-94 (193)
441 PF01935 DUF87: Domain of unkn 88.5 0.79 1.7E-05 40.4 4.9 42 69-113 23-64 (229)
442 PRK14948 DNA polymerase III su 88.5 1.9 4.2E-05 44.0 8.1 19 70-88 39-57 (620)
443 TIGR02655 circ_KaiC circadian 88.5 0.85 1.8E-05 45.3 5.5 53 67-124 261-313 (484)
444 TIGR01420 pilT_fam pilus retra 88.4 0.7 1.5E-05 43.6 4.7 42 69-113 122-163 (343)
445 PRK07471 DNA polymerase III su 88.4 2.9 6.3E-05 39.7 8.8 19 70-88 42-60 (365)
446 TIGR02655 circ_KaiC circadian 88.4 0.99 2.2E-05 44.8 5.9 56 66-125 18-73 (484)
447 KOG2228 Origin recognition com 88.3 4.1 9E-05 37.4 9.0 29 199-227 139-167 (408)
448 PF03969 AFG1_ATPase: AFG1-lik 88.1 2.3 4.9E-05 40.3 7.8 18 68-85 61-78 (362)
449 PRK08903 DnaA regulatory inact 88.0 1.4 3.1E-05 38.7 6.2 19 69-87 42-60 (227)
450 COG4098 comFA Superfamily II D 88.0 4.4 9.6E-05 37.2 9.0 84 100-211 304-387 (441)
451 PRK11034 clpA ATP-dependent Cl 88.0 1.6 3.4E-05 45.7 7.2 20 68-87 206-225 (758)
452 KOG0330 ATP-dependent RNA heli 88.0 2.7 5.8E-05 39.2 7.8 87 319-409 116-210 (476)
453 PRK09361 radB DNA repair and r 87.8 0.81 1.7E-05 40.2 4.5 39 68-110 22-60 (225)
454 PF00158 Sigma54_activat: Sigm 87.7 1.1 2.4E-05 37.3 4.9 18 68-85 21-38 (168)
455 CHL00095 clpC Clp protease ATP 87.6 1.3 2.8E-05 47.2 6.6 20 69-88 200-219 (821)
456 PF01637 Arch_ATPase: Archaeal 87.6 2.8 6E-05 36.7 7.9 17 69-85 20-36 (234)
457 TIGR01054 rgy reverse gyrase. 87.5 1.3 2.8E-05 48.8 6.6 82 331-412 120-208 (1171)
458 PRK07993 DNA polymerase III su 87.5 3.8 8.2E-05 38.4 8.9 38 51-88 3-43 (334)
459 COG0513 SrmB Superfamily II DN 87.5 2.1 4.5E-05 42.9 7.6 73 335-411 102-182 (513)
460 TIGR02880 cbbX_cfxQ probable R 87.4 0.93 2E-05 41.4 4.7 19 69-87 58-76 (284)
461 PRK13531 regulatory ATPase Rav 87.3 0.39 8.5E-06 46.7 2.3 33 54-86 24-56 (498)
462 KOG0333 U5 snRNP-like RNA heli 87.3 4.9 0.00011 39.1 9.3 75 100-203 516-591 (673)
463 TIGR02788 VirB11 P-type DNA tr 87.3 0.71 1.5E-05 42.8 3.9 19 67-85 142-160 (308)
464 TIGR03754 conj_TOL_TraD conjug 87.2 1.7 3.8E-05 44.0 6.8 52 69-124 180-233 (643)
465 TIGR02538 type_IV_pilB type IV 87.2 0.72 1.6E-05 46.6 4.2 47 43-95 295-341 (564)
466 KOG0060 Long-chain acyl-CoA tr 87.1 0.29 6.4E-06 47.8 1.3 31 195-225 586-616 (659)
467 TIGR03743 SXT_TraD conjugative 87.1 1.5 3.3E-05 44.8 6.5 53 68-124 175-229 (634)
468 TIGR02868 CydC thiol reductant 87.0 1.6 3.5E-05 44.0 6.6 30 195-224 486-515 (529)
469 TIGR00763 lon ATP-dependent pr 86.9 1.3 2.8E-05 46.8 6.1 20 68-87 346-365 (775)
470 PRK13850 type IV secretion sys 86.8 0.85 1.8E-05 46.8 4.5 50 69-124 139-188 (670)
471 PRK06904 replicative DNA helic 86.7 5.3 0.00012 39.4 9.8 61 59-123 211-271 (472)
472 TIGR02688 conserved hypothetic 86.7 1.3 2.8E-05 42.3 5.3 53 35-88 172-228 (449)
473 cd00268 DEADc DEAD-box helicas 86.5 5.4 0.00012 34.1 8.9 79 331-413 68-153 (203)
474 COG1066 Sms Predicted ATP-depe 86.5 3.6 7.8E-05 38.9 7.8 50 69-124 93-142 (456)
475 PRK10865 protein disaggregatio 86.4 1.6 3.4E-05 46.6 6.4 17 71-87 600-616 (857)
476 PRK09519 recA DNA recombinatio 86.4 2.1 4.5E-05 44.5 7.0 45 66-114 57-101 (790)
477 PF07728 AAA_5: AAA domain (dy 86.3 0.52 1.1E-05 37.7 2.2 17 71-87 1-17 (139)
478 PF00004 AAA: ATPase family as 86.2 0.77 1.7E-05 36.1 3.1 16 72-87 1-16 (132)
479 TIGR03346 chaperone_ClpB ATP-d 86.2 2.1 4.6E-05 45.8 7.3 88 55-210 178-279 (852)
480 COG1222 RPT1 ATP-dependent 26S 86.1 3.5 7.5E-05 38.2 7.4 72 29-115 150-223 (406)
481 COG0630 VirB11 Type IV secreto 86.1 1.6 3.5E-05 40.4 5.6 56 50-113 127-182 (312)
482 PF13207 AAA_17: AAA domain; P 86.1 0.61 1.3E-05 36.2 2.5 16 72-87 2-17 (121)
483 KOG1806 DEAD box containing he 85.9 1.3 2.9E-05 46.3 5.2 69 50-124 738-806 (1320)
484 PF12775 AAA_7: P-loop contain 85.9 1.3 2.7E-05 40.2 4.7 18 68-85 32-49 (272)
485 PF04665 Pox_A32: Poxvirus A32 85.8 1.2 2.6E-05 39.2 4.3 37 69-109 13-49 (241)
486 TIGR03345 VI_ClpV1 type VI sec 85.8 2.8 6E-05 44.7 7.8 34 54-87 570-614 (852)
487 PF03668 ATP_bind_2: P-loop AT 85.7 27 0.00059 31.6 14.1 28 340-370 255-282 (284)
488 TIGR00609 recB exodeoxyribonuc 85.7 1.7 3.7E-05 47.8 6.4 54 70-123 10-64 (1087)
489 PF05673 DUF815: Protein of un 85.7 3 6.6E-05 36.6 6.6 66 69-141 52-117 (249)
490 PRK04537 ATP-dependent RNA hel 85.6 7.2 0.00016 39.7 10.4 78 101-207 257-335 (572)
491 TIGR02533 type_II_gspE general 85.5 1.7 3.6E-05 43.1 5.6 46 43-94 221-266 (486)
492 PF07724 AAA_2: AAA domain (Cd 85.3 0.7 1.5E-05 38.5 2.5 18 70-87 4-21 (171)
493 PHA00729 NTP-binding motif con 85.2 2.1 4.6E-05 37.2 5.5 19 70-88 18-36 (226)
494 COG2812 DnaX DNA polymerase II 85.2 1.4 3E-05 43.4 4.8 24 195-218 117-140 (515)
495 KOG0745 Putative ATP-dependent 85.2 0.7 1.5E-05 43.6 2.7 19 69-87 226-244 (564)
496 PRK09302 circadian clock prote 85.1 1.9 4.2E-05 43.2 6.1 50 66-119 28-81 (509)
497 COG0468 RecA RecA/RadA recombi 84.9 1.6 3.5E-05 39.4 4.8 39 71-113 62-100 (279)
498 KOG2170 ATPase of the AAA+ sup 84.8 1.9 4.2E-05 38.8 5.1 28 72-100 113-140 (344)
499 KOG2004 Mitochondrial ATP-depe 84.8 1.9 4.2E-05 43.5 5.6 48 174-225 485-533 (906)
500 PF08423 Rad51: Rad51; InterP 84.7 1.1 2.5E-05 40.1 3.8 40 70-109 39-80 (256)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-57 Score=395.13 Aligned_cols=351 Identities=36% Similarity=0.559 Sum_probs=318.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE
Q 012427 28 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (464)
Q Consensus 28 ~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil 107 (464)
.|.++ +++|.+.++++..|++.|+++|+++++.++. |+++|..+.||||||.+|++|+++.+...+ ..+.+|||
T Consensus 62 sf~dL-gv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p-~~~~~lVL 135 (476)
T KOG0330|consen 62 SFADL-GVHPELLEACQELGWKKPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEP-KLFFALVL 135 (476)
T ss_pred chhhc-CcCHHHHHHHHHhCcCCCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCC-CCceEEEe
Confidence 45566 5999999999999999999999999777765 999999999999999999999999999864 55789999
Q ss_pred cccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhh
Q 012427 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (464)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l 187 (464)
+||++|+.|+.+.+..++...|+.+.++.|+.+...+... +.+.++|+|+||+.|++++
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~---------------------L~kkPhilVaTPGrL~dhl 194 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQ---------------------LSKKPHILVATPGRLWDHL 194 (476)
T ss_pred cCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHH---------------------hhcCCCEEEeCcHHHHHHH
Confidence 9999999999999999999999999999999887665444 4566799999999999999
Q ss_pred hcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCce
Q 012427 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (464)
Q Consensus 188 ~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
.+.+.+.+..++++|+||||+++++.|...+..|+..++. ..
T Consensus 195 ~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~--------------------------------------er 236 (476)
T KOG0330|consen 195 ENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPR--------------------------------------ER 236 (476)
T ss_pred HhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCc--------------------------------------cc
Confidence 9888899999999999999999999999999999998874 33
Q ss_pred eeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHH
Q 012427 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (464)
Q Consensus 268 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (464)
+.+++|||++....++....+.+|..+.... .+..-..+..++...+...|...|+.++....++.+||||++...+..
T Consensus 237 qt~LfsATMt~kv~kL~rasl~~p~~v~~s~-ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~ 315 (476)
T KOG0330|consen 237 QTFLFSATMTKKVRKLQRASLDNPVKVAVSS-KYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRF 315 (476)
T ss_pred eEEEEEeecchhhHHHHhhccCCCeEEeccc-hhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHH
Confidence 8999999999999999888888887776554 344555667778888999999999999999999999999999999999
Q ss_pred HHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhh
Q 012427 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (464)
Q Consensus 348 l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~ 427 (464)
++-.|+..+ +.+..+||.|+...|...++.|++|.++||+||+++++|+|+|.+++||.|+.|.+..+|+||+||.+
T Consensus 316 la~~L~~lg---~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRta 392 (476)
T KOG0330|consen 316 LALLLRNLG---FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTA 392 (476)
T ss_pred HHHHHHhcC---cceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHccccc
Confidence 999999887 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeeCcccccc
Q 012427 428 RAGQLGRCFTLLHKDEKKGA 447 (464)
Q Consensus 428 R~g~~g~~~~~~~~~~~~~~ 447 (464)
|.|+.|.++.+++.-|.+.+
T Consensus 393 RaGrsG~~ItlVtqyDve~~ 412 (476)
T KOG0330|consen 393 RAGRSGKAITLVTQYDVELV 412 (476)
T ss_pred ccCCCcceEEEEehhhhHHH
Confidence 99999999999988555443
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-57 Score=419.99 Aligned_cols=351 Identities=32% Similarity=0.510 Sum_probs=317.7
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhh-----ccCCcc
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLR 103 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~-----~~~~~~ 103 (464)
|++++ |++...++++..||..|+++|...|+.++. |++++..+.||+|||++|++|++..+... ..++++
T Consensus 93 f~~~~-ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~ 167 (519)
T KOG0331|consen 93 FQELG-LSEELMKALKEQGFEKPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPI 167 (519)
T ss_pred hhccc-ccHHHHHHHHhcCCCCCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCe
Confidence 44553 999999999999999999999999777765 99999999999999999999999999862 245788
Q ss_pred EEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH
Q 012427 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183 (464)
Q Consensus 104 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l 183 (464)
+|||+||++|+.|+.+.+.++....++++.|++|+.+...+... +.++.+|+|+||+++
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~---------------------l~~gvdiviaTPGRl 226 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRD---------------------LERGVDVVIATPGRL 226 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHH---------------------HhcCCcEEEeCChHH
Confidence 99999999999999999999999989999999999998877654 456789999999999
Q ss_pred HHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCC
Q 012427 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (464)
Q Consensus 184 ~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
.+++..+. .+++++.++|+||||+|++.+|.+.++.|+..++.+.
T Consensus 227 ~d~le~g~-~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~---------------------------------- 271 (519)
T KOG0331|consen 227 IDLLEEGS-LNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPD---------------------------------- 271 (519)
T ss_pred HHHHHcCC-ccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCc----------------------------------
Confidence 99999865 8899999999999999999999999999999884322
Q ss_pred CCceeeEEeeeeeecCccchhcccccCCeeeecCCc-cccCccccccceeeccCCchHHHHHHHHHhh---CCCeEEEEe
Q 012427 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSL---GEEKCIVFT 339 (464)
Q Consensus 264 ~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~lVf~ 339 (464)
.|.+++|||++.....+...++.++..+..... .......+.++...++...|...+..++... .++|+||||
T Consensus 272 ---rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc 348 (519)
T KOG0331|consen 272 ---RQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFC 348 (519)
T ss_pred ---ccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEe
Confidence 279999999999999999999999988887755 5666778888888888888888888888776 467999999
Q ss_pred cChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchh
Q 012427 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (464)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~ 419 (464)
.++..|++++..++..+ +++..+||+.+..+|+.+++.|++|++.|||||+++++|+|+|++++||+|++|.++.+|
T Consensus 349 ~tkr~~~~l~~~l~~~~---~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdY 425 (519)
T KOG0331|consen 349 ETKRTCDELARNLRRKG---WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDY 425 (519)
T ss_pred cchhhHHHHHHHHHhcC---cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHH
Confidence 99999999999999876 889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCccEEEEeeCccccc
Q 012427 420 IHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 420 ~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
+||+||.||.|+.|.+++|++..+...
T Consensus 426 VHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 426 VHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred HhhcCccccCCCCceEEEEEeHHHHHH
Confidence 999999999999999999998876654
No 3
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-54 Score=417.73 Aligned_cols=353 Identities=27% Similarity=0.441 Sum_probs=295.1
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc------cC
Q 012427 27 CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VR 100 (464)
Q Consensus 27 ~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~------~~ 100 (464)
..|++++ |++.+.+.++++||..|+++|.++++.++. |+|+++++|||+|||++|++++++.+.... ..
T Consensus 8 ~~f~~~~-l~~~l~~~l~~~g~~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~ 82 (423)
T PRK04837 8 QKFSDFA-LHPQVVEALEKKGFHNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVN 82 (423)
T ss_pred CCHhhCC-CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccC
Confidence 4455553 999999999999999999999999888776 999999999999999999999999886532 13
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCc
Q 012427 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~ 180 (464)
++++|||+||++|+.|+.+.+..+....++++..++|+.....+.. .+..+++|+|+||
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---------------------~l~~~~~IlV~TP 141 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---------------------VLESGVDILIGTT 141 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HhcCCCCEEEECH
Confidence 4689999999999999999999999888999999999877654432 2345679999999
Q ss_pred hHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccC
Q 012427 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (464)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
+++.+++.... +.+++++++|+||||++.+.++...+..++..++...
T Consensus 142 ~~l~~~l~~~~-~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~------------------------------- 189 (423)
T PRK04837 142 GRLIDYAKQNH-INLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN------------------------------- 189 (423)
T ss_pred HHHHHHHHcCC-cccccccEEEEecHHHHhhcccHHHHHHHHHhCCCcc-------------------------------
Confidence 99999887643 7789999999999999999998888888877654321
Q ss_pred CCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEec
Q 012427 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (464)
Q Consensus 261 ~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~ 340 (464)
..+.+++|||++..........+.++..+...... .....+...........+...+..++......++||||+
T Consensus 190 -----~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~ 263 (423)
T PRK04837 190 -----QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFAN 263 (423)
T ss_pred -----ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 22568999999877777666667777665543322 222333333444455567777788877777789999999
Q ss_pred ChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhh
Q 012427 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (464)
Q Consensus 341 s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~ 420 (464)
++..|+.+++.|.+.+ +.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.++..|+
T Consensus 264 t~~~~~~l~~~L~~~g---~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yi 340 (423)
T PRK04837 264 TKHRCEEIWGHLAADG---HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYV 340 (423)
T ss_pred CHHHHHHHHHHHHhCC---CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheE
Confidence 9999999999998876 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCccEEEEeeCccccc
Q 012427 421 HRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 421 Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
||+||+||.|+.|.+++|+.+++...
T Consensus 341 qR~GR~gR~G~~G~ai~~~~~~~~~~ 366 (423)
T PRK04837 341 HRIGRTGRAGASGHSISLACEEYALN 366 (423)
T ss_pred eccccccCCCCCeeEEEEeCHHHHHH
Confidence 99999999999999999998775443
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.8e-54 Score=422.84 Aligned_cols=360 Identities=28% Similarity=0.448 Sum_probs=299.2
Q ss_pred cCCCCCccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHH
Q 012427 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ 92 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~ 92 (464)
.....|....+|+++ +|++.+.+.++++||.+|+++|.++++.++. |+++++++|||+|||++|++|++.
T Consensus 121 ~g~~~p~p~~~f~~~------~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~ 190 (545)
T PTZ00110 121 AGENVPKPVVSFEYT------SFPDYILKSLKNAGFTEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIV 190 (545)
T ss_pred cCCCCCcccCCHhhc------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHH
Confidence 344455556666665 4999999999999999999999999888876 999999999999999999999988
Q ss_pred HHHhhc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHh
Q 012427 93 TLSNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 168 (464)
Q Consensus 93 ~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (464)
.+.... ..++.+|||+||++|+.|+.+.+..++...++++.+++|+.+...+.. .
T Consensus 191 ~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~---------------------~ 249 (545)
T PTZ00110 191 HINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIY---------------------A 249 (545)
T ss_pred HHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHH---------------------H
Confidence 876431 235679999999999999999999998888899999999887554432 2
Q ss_pred hhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccch
Q 012427 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248 (464)
Q Consensus 169 ~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (464)
+..+++|+|+||++|.+++.... ..+.++++||+||||++.+.+|...+..++..+..
T Consensus 250 l~~~~~IlVaTPgrL~d~l~~~~-~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~--------------------- 307 (545)
T PTZ00110 250 LRRGVEILIACPGRLIDFLESNV-TNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP--------------------- 307 (545)
T ss_pred HHcCCCEEEECHHHHHHHHHcCC-CChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCC---------------------
Confidence 44667999999999999988643 66889999999999999999999988888876542
Q ss_pred hhhccccccccCCCCCCceeeEEeeeeeecCccchhccccc-CCeeeecCCccccCccccccceeeccCCchHHHHHHHH
Q 012427 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327 (464)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 327 (464)
..+.+++|||++.....+....+. .+..+............+...........+...+..++
T Consensus 308 -----------------~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll 370 (545)
T PTZ00110 308 -----------------DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLL 370 (545)
T ss_pred -----------------CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHH
Confidence 338899999997776666555443 45555444333233344445555556667777777777
Q ss_pred Hhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCC
Q 012427 328 QSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405 (464)
Q Consensus 328 ~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~ 405 (464)
... .+.++||||++++.|+.+++.|+..+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 371 ~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g---~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 371 QRIMRDGDKILIFVETKKGADFLTKELRLDG---WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHhcccCCeEEEEecChHHHHHHHHHHHHcC---CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 765 46799999999999999999998766 7889999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012427 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 406 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
+||+++.|.++.+|+||+||+||.|+.|.+++|++.++..
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYR 487 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHH
Confidence 9999999999999999999999999999999999887654
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-53 Score=413.78 Aligned_cols=346 Identities=32% Similarity=0.531 Sum_probs=309.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhh-ccCCccEEEE
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVV 107 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~-~~~~~~~lil 107 (464)
|+.+ +|++.+.+.++++||..|+++|..+++.++. |+++++.++||+|||.+|++|+++.+... ......+||+
T Consensus 31 F~~l-~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil 105 (513)
T COG0513 31 FASL-GLSPELLQALKDLGFEEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALIL 105 (513)
T ss_pred Hhhc-CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEE
Confidence 4455 3999999999999999999999999888876 89999999999999999999999997742 2121129999
Q ss_pred cccHHHHHHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHh
Q 012427 108 LPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (464)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~ 186 (464)
+||++|+.|+++.+..+.... ++.+..++|+.+...+... +..+++|+|+||++++++
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---------------------l~~~~~ivVaTPGRllD~ 164 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---------------------LKRGVDIVVATPGRLLDL 164 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---------------------HhcCCCEEEECccHHHHH
Confidence 999999999999999999988 7999999999988777533 344689999999999999
Q ss_pred hhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCc
Q 012427 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (464)
Q Consensus 187 l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
+.+. .+.++.+.++|+|||++|++.+|.+.+..++..++..
T Consensus 165 i~~~-~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~-------------------------------------- 205 (513)
T COG0513 165 IKRG-KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPD-------------------------------------- 205 (513)
T ss_pred HHcC-CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcc--------------------------------------
Confidence 9986 5889999999999999999999999999999988642
Q ss_pred eeeEEeeeeeecCccchhcccccCCeeeecCCcc-ccCccccccceeeccCCc-hHHHHHHHHHhhCCCeEEEEecChhh
Q 012427 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-YKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVES 344 (464)
Q Consensus 267 ~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~lVf~~s~~~ 344 (464)
.|.++||||++.....+....+.+|..+...... ......+.+++..+.... |...+..++......++||||++...
T Consensus 206 ~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~ 285 (513)
T COG0513 206 RQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRL 285 (513)
T ss_pred cEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHH
Confidence 3899999999998888888899999877766332 235677777777777665 99999999998888899999999999
Q ss_pred HHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhh
Q 012427 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424 (464)
Q Consensus 345 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~G 424 (464)
++.++..|...+ +.+..+||+|+..+|...++.|++|+.+|||||+++++|+|+|++++||+|+.|.++..|+||+|
T Consensus 286 ~~~l~~~l~~~g---~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiG 362 (513)
T COG0513 286 VEELAESLRKRG---FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIG 362 (513)
T ss_pred HHHHHHHHHHCC---CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccC
Confidence 999999999887 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCccEEEEeeCc
Q 012427 425 RTARAGQLGRCFTLLHKD 442 (464)
Q Consensus 425 R~~R~g~~g~~~~~~~~~ 442 (464)
|+||.|+.|.++.|+...
T Consensus 363 RTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 363 RTGRAGRKGVAISFVTEE 380 (513)
T ss_pred ccccCCCCCeEEEEeCcH
Confidence 999999999999999874
No 6
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5e-53 Score=412.28 Aligned_cols=346 Identities=27% Similarity=0.426 Sum_probs=297.9
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
|+++ +|++.+.+.++++||.+|+++|.++++.++. ++++++++|||+|||++|++++++.+.... ...++||++
T Consensus 6 f~~l-~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-~~~~~lil~ 79 (460)
T PRK11776 6 FSTL-PLPPALLANLNELGYTEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-FRVQALVLC 79 (460)
T ss_pred hhhc-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhcc-CCceEEEEe
Confidence 4444 3999999999999999999999999888775 899999999999999999999999886542 345799999
Q ss_pred ccHHHHHHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhh
Q 012427 109 PTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l 187 (464)
||++|+.|+.+.++.+.... ++.+..++|+.+...+... +..+++|+|+||+++.+++
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---------------------l~~~~~IvV~Tp~rl~~~l 138 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---------------------LEHGAHIIVGTPGRILDHL 138 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---------------------hcCCCCEEEEChHHHHHHH
Confidence 99999999999999987654 6889999999877655433 3456799999999999998
Q ss_pred hcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCce
Q 012427 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (464)
Q Consensus 188 ~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
.+.. +.+++++++|+||||++.+.+|...+..++..++. ..
T Consensus 139 ~~~~-~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~--------------------------------------~~ 179 (460)
T PRK11776 139 RKGT-LDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA--------------------------------------RR 179 (460)
T ss_pred HcCC-ccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc--------------------------------------cc
Confidence 8744 67889999999999999999999888888877653 23
Q ss_pred eeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHH
Q 012427 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (464)
Q Consensus 268 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (464)
+.+++|||++..........+.++..+...... ....+..++.......+...+..++....+.++||||+++..++.
T Consensus 180 q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~ 257 (460)
T PRK11776 180 QTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQE 257 (460)
T ss_pred EEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHH
Confidence 889999999888878777777777766554332 223355555566666688888888888888899999999999999
Q ss_pred HHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhh
Q 012427 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (464)
Q Consensus 348 l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~ 427 (464)
+++.|.+.+ +.+..+||+|+..+|+.+++.|++|+.++||||+++++|+|+|++++||+++.|.+...|+||+||+|
T Consensus 258 l~~~L~~~~---~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtG 334 (460)
T PRK11776 258 VADALNAQG---FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTG 334 (460)
T ss_pred HHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhccccc
Confidence 999999876 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeeCcccc
Q 012427 428 RAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 428 R~g~~g~~~~~~~~~~~~ 445 (464)
|.|+.|.+++|+..++..
T Consensus 335 R~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 335 RAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred CCCCcceEEEEEchhHHH
Confidence 999999999999887543
No 7
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.2e-53 Score=416.18 Aligned_cols=351 Identities=27% Similarity=0.421 Sum_probs=294.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc------cCCc
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCL 102 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~------~~~~ 102 (464)
|+++ +|++.+.+.|+++||..|+++|.++++.+++ ++|+++.+|||+|||++|++++++.+.... ....
T Consensus 11 f~~l-~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ 85 (572)
T PRK04537 11 FSSF-DLHPALLAGLESAGFTRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDP 85 (572)
T ss_pred hhhc-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCc
Confidence 4444 3999999999999999999999999988876 999999999999999999999999886431 1246
Q ss_pred cEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchH
Q 012427 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (464)
Q Consensus 103 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~ 182 (464)
++|||+||++|+.|+++.+..+....++++..++|+.....+... +..+++|+|+||++
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~---------------------l~~~~dIiV~TP~r 144 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL---------------------LQQGVDVIIATPGR 144 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------HhCCCCEEEECHHH
Confidence 899999999999999999999998889999999999876554322 33457999999999
Q ss_pred HHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCC
Q 012427 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (464)
Q Consensus 183 l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
|++.+.....+.+..+++||+||||++.+.+|...+..++..+...
T Consensus 145 L~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~---------------------------------- 190 (572)
T PRK04537 145 LIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER---------------------------------- 190 (572)
T ss_pred HHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc----------------------------------
Confidence 9998877555678889999999999999988888888887765431
Q ss_pred CCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecCh
Q 012427 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 342 (464)
Q Consensus 263 ~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~ 342 (464)
...+.+++|||+...........+..+..+...... .....+.+.........+...+..++....+.++||||+++
T Consensus 191 --~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~ 267 (572)
T PRK04537 191 --GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTK 267 (572)
T ss_pred --cCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCH
Confidence 123889999999877766666666666444332222 22233444455555666777788888777788999999999
Q ss_pred hhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhh
Q 012427 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 422 (464)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~ 422 (464)
..++.+++.|.+.+ +.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|.+..+|+||
T Consensus 268 ~~ae~l~~~L~~~g---~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqR 344 (572)
T PRK04537 268 AFVERVARTLERHG---YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHR 344 (572)
T ss_pred HHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhh
Confidence 99999999998876 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCccEEEEeeCcccc
Q 012427 423 AGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 423 ~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
+||+||.|+.|.+++|+++.+..
T Consensus 345 iGRaGR~G~~G~ai~~~~~~~~~ 367 (572)
T PRK04537 345 IGRTARLGEEGDAISFACERYAM 367 (572)
T ss_pred hcccccCCCCceEEEEecHHHHH
Confidence 99999999999999999876543
No 8
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.9e-53 Score=409.68 Aligned_cols=348 Identities=32% Similarity=0.502 Sum_probs=292.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc-----CCcc
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----RCLR 103 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~-----~~~~ 103 (464)
|+.+ +|++.+.+.+.++||..|+++|.++++.++. ++|+++.+|||+|||++|++++++.+..... ...+
T Consensus 3 f~~l-~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 77 (456)
T PRK10590 3 FDSL-GLSPDILRAVAEQGYREPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVR 77 (456)
T ss_pred HHHc-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCce
Confidence 4445 4999999999999999999999999888776 8999999999999999999999998865321 2347
Q ss_pred EEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH
Q 012427 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183 (464)
Q Consensus 104 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l 183 (464)
+|||+||++|+.|+.+.+..+....++.+..++|+.+...+.. .+..+++|+|+||++|
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---------------------~l~~~~~IiV~TP~rL 136 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---------------------KLRGGVDVLVATPGRL 136 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---------------------HHcCCCcEEEEChHHH
Confidence 9999999999999999999998888899999999887655432 2345679999999999
Q ss_pred HHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCC
Q 012427 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (464)
Q Consensus 184 ~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
.+++.... +.+++++++|+||||++++.++...+..++..+..
T Consensus 137 ~~~~~~~~-~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~------------------------------------ 179 (456)
T PRK10590 137 LDLEHQNA-VKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPA------------------------------------ 179 (456)
T ss_pred HHHHHcCC-cccccceEEEeecHHHHhccccHHHHHHHHHhCCc------------------------------------
Confidence 99887643 67889999999999999998888888877765542
Q ss_pred CCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChh
Q 012427 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 343 (464)
Q Consensus 264 ~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~ 343 (464)
..+.+++|||++..........+.++..+...... .....+..+........+...+..++......++||||+++.
T Consensus 180 --~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~ 256 (456)
T PRK10590 180 --KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKH 256 (456)
T ss_pred --cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHH
Confidence 23789999999877777766666666655443322 223334444555555666777777777666779999999999
Q ss_pred hHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhh
Q 012427 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423 (464)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~ 423 (464)
.++.+++.|.+.+ +.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++.+|+||+
T Consensus 257 ~~~~l~~~L~~~g---~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~ 333 (456)
T PRK10590 257 GANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRI 333 (456)
T ss_pred HHHHHHHHHHHCC---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhc
Confidence 9999999998776 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCccEEEEeeCcccc
Q 012427 424 GRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 424 GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
||+||.|..|.+++|+..++..
T Consensus 334 GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 334 GRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred cccccCCCCeeEEEEecHHHHH
Confidence 9999999999999999877654
No 9
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.3e-52 Score=411.86 Aligned_cols=355 Identities=26% Similarity=0.469 Sum_probs=293.6
Q ss_pred CCccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHh
Q 012427 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (464)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~ 96 (464)
.|....+|+.+ +|++.+.+.++++||..|+++|.++++.++. |+++++.+|||+|||++|++|++..+..
T Consensus 116 ~p~pi~~f~~~------~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~ 185 (518)
T PLN00206 116 VPPPILSFSSC------GLPPKLLLNLETAGYEFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCT 185 (518)
T ss_pred CCchhcCHHhC------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHh
Confidence 33444445544 4999999999999999999999999988875 8999999999999999999999988753
Q ss_pred h------ccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh
Q 012427 97 R------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (464)
Q Consensus 97 ~------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (464)
. ...++++|||+||++|+.|+.+.++.+....++.+..+.|+.....+.. .+.
T Consensus 186 ~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~---------------------~l~ 244 (518)
T PLN00206 186 IRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY---------------------RIQ 244 (518)
T ss_pred hccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHH---------------------Hhc
Confidence 2 1245689999999999999999999998888888888999877655432 244
Q ss_pred cCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhh
Q 012427 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (464)
Q Consensus 171 ~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (464)
.+++|+|+||++|.+++.+. ...+++++++|+||||++.+.+|...+..++..+.
T Consensus 245 ~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~------------------------ 299 (518)
T PLN00206 245 QGVELIVGTPGRLIDLLSKH-DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS------------------------ 299 (518)
T ss_pred CCCCEEEECHHHHHHHHHcC-CccchheeEEEeecHHHHhhcchHHHHHHHHHhCC------------------------
Confidence 56799999999999998875 47788999999999999999999888887776542
Q ss_pred hccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhh
Q 012427 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330 (464)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 330 (464)
..+.+++|||++............++..+...... .....+......+....+...+.+++...
T Consensus 300 ---------------~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~ 363 (518)
T PLN00206 300 ---------------QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSK 363 (518)
T ss_pred ---------------CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhh
Confidence 23789999999888777777777777666554432 22233444445555566666777777654
Q ss_pred C--CCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEE
Q 012427 331 G--EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (464)
Q Consensus 331 ~--~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi 408 (464)
. ..++||||+++..++.+++.|... .++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 364 ~~~~~~~iVFv~s~~~a~~l~~~L~~~--~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI 441 (518)
T PLN00206 364 QHFKPPAVVFVSSRLGADLLANAITVV--TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVI 441 (518)
T ss_pred cccCCCEEEEcCCchhHHHHHHHHhhc--cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEE
Confidence 3 358999999999999999999752 237889999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012427 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 409 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
+++.|.++.+|+||+||+||.|..|.+++|++.++..
T Consensus 442 ~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~ 478 (518)
T PLN00206 442 IFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRN 478 (518)
T ss_pred EeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHH
Confidence 9999999999999999999999999999999877654
No 10
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-52 Score=375.19 Aligned_cols=345 Identities=33% Similarity=0.528 Sum_probs=307.6
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCC----ccEEEEcc
Q 012427 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC----LRALVVLP 109 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~----~~~lil~P 109 (464)
+|.+++++++..+||..++|.|..+++.++. ++++.+.++||||||++|++|+++.+.+...+. --+||++|
T Consensus 12 ~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsP 87 (567)
T KOG0345|consen 12 PLSPWLLEALDESGFEKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISP 87 (567)
T ss_pred CccHHHHHHHHhcCCcccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecC
Confidence 4889999999999999999999999777665 999999999999999999999999995543221 24899999
Q ss_pred cHHHHHHHHHHHHHhccc-cCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhh
Q 012427 110 TRDLALQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (464)
Q Consensus 110 ~~~L~~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~ 188 (464)
|++|+.|+.+.+..+... .++.+.++.|+....+.+..+. .++++|+|+||++|.+.+.
T Consensus 88 TRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fk--------------------ee~~nIlVgTPGRL~di~~ 147 (567)
T KOG0345|consen 88 TRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFK--------------------EEGPNILVGTPGRLLDILQ 147 (567)
T ss_pred cHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHH--------------------HhCCcEEEeCchhHHHHHh
Confidence 999999999999998887 4789999999988777655543 4678999999999999998
Q ss_pred c-CCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCce
Q 012427 189 A-TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (464)
Q Consensus 189 ~-~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
+ ...+++.++.++|+||||++++.+|...+..|+..++..+
T Consensus 148 ~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQR-------------------------------------- 189 (567)
T KOG0345|consen 148 REAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQR-------------------------------------- 189 (567)
T ss_pred chhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccc--------------------------------------
Confidence 7 3445677999999999999999999999999999988544
Q ss_pred eeEEeeeeeecCccchhcccccCCeeeecCCcc-ccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHH
Q 012427 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (464)
Q Consensus 268 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (464)
++=+||||.......+...++.+|+.+...... ...|.....++..++...|...+.+++..+..+++|||+++....+
T Consensus 190 RTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVe 269 (567)
T KOG0345|consen 190 RTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVE 269 (567)
T ss_pred ccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHH
Confidence 667899999999999999999999988776653 3467788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhh
Q 012427 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (464)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~ 426 (464)
.+...|... .....+..+||.|....|..+++.|......+|+||+++++|+|+|+++.||++++|.++..|.||+||+
T Consensus 270 Yf~~~~~~~-l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 270 YFGKLFSRL-LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRT 348 (567)
T ss_pred HHHHHHHHH-hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchh
Confidence 999988876 3346788999999999999999999998889999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeeC
Q 012427 427 ARAGQLGRCFTLLHK 441 (464)
Q Consensus 427 ~R~g~~g~~~~~~~~ 441 (464)
+|.|+.|.+++|+.+
T Consensus 349 aR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 349 ARAGREGNAIVFLNP 363 (567)
T ss_pred hhccCccceEEEecc
Confidence 999999999999987
No 11
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.8e-52 Score=404.66 Aligned_cols=349 Identities=30% Similarity=0.463 Sum_probs=289.9
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc---cCCccEE
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRAL 105 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~---~~~~~~l 105 (464)
|+.+ +|++.+++.++++||..|+++|.++++.++. ++++++.+|||+|||++|++++++.+.... ....++|
T Consensus 3 f~~l-~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~l 77 (434)
T PRK11192 3 FSEL-ELDESLLEALQDKGYTRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRIL 77 (434)
T ss_pred Hhhc-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEE
Confidence 4455 4999999999999999999999999888876 899999999999999999999998886431 2345899
Q ss_pred EEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHH
Q 012427 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 185 (464)
Q Consensus 106 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~ 185 (464)
|++||++|+.|+.+.+..++...++++..++|+......... +..+++|+|+||++|.+
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---------------------l~~~~~IlV~Tp~rl~~ 136 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEV---------------------FSENQDIVVATPGRLLQ 136 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHH---------------------hcCCCCEEEEChHHHHH
Confidence 999999999999999999999889999999998876554322 34567999999999999
Q ss_pred hhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCC
Q 012427 186 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (464)
Q Consensus 186 ~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
.+.... +.+.++++||+||||++++.++...+..+...+..
T Consensus 137 ~~~~~~-~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~-------------------------------------- 177 (434)
T PRK11192 137 YIKEEN-FDCRAVETLILDEADRMLDMGFAQDIETIAAETRW-------------------------------------- 177 (434)
T ss_pred HHHcCC-cCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcc--------------------------------------
Confidence 887644 77889999999999999999988888888765542
Q ss_pred ceeeEEeeeeeec-CccchhcccccCCeeeecCCccccCccccccceeecc-CCchHHHHHHHHHhhCCCeEEEEecChh
Q 012427 266 RLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVE 343 (464)
Q Consensus 266 ~~~~i~~sat~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~lVf~~s~~ 343 (464)
..+.+++|||+.. ....+....+.++..+...... .....+.++..... ...+...+..+++.....++||||++++
T Consensus 178 ~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~ 256 (434)
T PRK11192 178 RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRE 256 (434)
T ss_pred ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChH
Confidence 2278999999964 3445555556666655443322 22233334433333 3557777777777667789999999999
Q ss_pred hHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhh
Q 012427 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423 (464)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~ 423 (464)
.++.+++.|++.+ +.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+
T Consensus 257 ~~~~l~~~L~~~~---~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 333 (434)
T PRK11192 257 RVHELAGWLRKAG---INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRI 333 (434)
T ss_pred HHHHHHHHHHhCC---CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcc
Confidence 9999999999866 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCccEEEEeeCccccc
Q 012427 424 GRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 424 GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
||+||.|..|.++++++..+...
T Consensus 334 GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 334 GRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred cccccCCCCceEEEEecHHHHHH
Confidence 99999999999999997766543
No 12
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-51 Score=403.09 Aligned_cols=349 Identities=30% Similarity=0.445 Sum_probs=291.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc------CCc
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCL 102 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~------~~~ 102 (464)
|..+ +|++.+.+.+.++||..|+++|.++++.+++ |+|+++.+|||+|||++|++++++.+..... ...
T Consensus 89 f~~~-~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 89 FHDF-NLAPELMHAIHDLGFPYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred HhHC-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 4444 4999999999999999999999999888776 9999999999999999999999998876431 146
Q ss_pred cEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchH
Q 012427 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (464)
Q Consensus 103 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~ 182 (464)
++|||+||++|+.|+.+.++.+....++++..++|+.+...+...+ ....++|+|+||++
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~--------------------~~~~~~Iiv~TP~~ 223 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQL--------------------EARFCDILVATPGR 223 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHH--------------------hCCCCCEEEECHHH
Confidence 8999999999999999999999888899999999987765553332 12457999999999
Q ss_pred HHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCC
Q 012427 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (464)
Q Consensus 183 l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
|..++.... ..++++++||+||||++.+.++...+..++..+...
T Consensus 224 Ll~~~~~~~-~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~---------------------------------- 268 (475)
T PRK01297 224 LLDFNQRGE-VHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK---------------------------------- 268 (475)
T ss_pred HHHHHHcCC-cccccCceEEechHHHHHhcccHHHHHHHHHhCCCC----------------------------------
Confidence 998877644 668899999999999999888887787777655321
Q ss_pred CCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecCh
Q 012427 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 342 (464)
Q Consensus 263 ~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~ 342 (464)
...+.+++|||+..........+..++..+...... .....+...........+...+..++......++||||+++
T Consensus 269 --~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~ 345 (475)
T PRK01297 269 --EERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRK 345 (475)
T ss_pred --CCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCH
Confidence 123889999999877777777677777665443332 22223333444445566777788888777778999999999
Q ss_pred hhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhh
Q 012427 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 422 (464)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~ 422 (464)
+.++.+++.|.+.+ +.+..+||+++..+|.++++.|++|+.++||||+++++|+|+|++++||+++.|.++.+|+||
T Consensus 346 ~~~~~l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr 422 (475)
T PRK01297 346 DEVRRIEERLVKDG---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHR 422 (475)
T ss_pred HHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHh
Confidence 99999999998766 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCccEEEEeeCcc
Q 012427 423 AGRTARAGQLGRCFTLLHKDE 443 (464)
Q Consensus 423 ~GR~~R~g~~g~~~~~~~~~~ 443 (464)
+||+||.|++|.+++|++++|
T Consensus 423 ~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 423 IGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred hCccCCCCCCceEEEEecHHH
Confidence 999999999999999998764
No 13
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-52 Score=377.47 Aligned_cols=414 Identities=44% Similarity=0.679 Sum_probs=353.0
Q ss_pred CCcc-CCCCCccccccccCCCCCCCCCCHHHHHH----------HHHCCCCccchhhHHhHHhhhCCCC-----CCCCEE
Q 012427 10 PVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVA----------LQNMGISSLFPVQVAVWQETIGPGL-----FERDLC 73 (464)
Q Consensus 10 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~----------~~~~~~~~l~~~Q~~~~~~i~~~~~-----~~~~~l 73 (464)
-.+| |.+.|....+-.-.+++.++ +.+.+... +.++++.++.|.|..+++.++..+. .++++.
T Consensus 109 ~~lp~wva~p~t~~~nslq~~s~l~-~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIc 187 (620)
T KOG0350|consen 109 VELPGWVAIPETAQNNSLQIFSVLG-KSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDIC 187 (620)
T ss_pred ccCcccccCceecCCCceeeeeccc-hhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceE
Confidence 3456 99999988887777788874 66655544 8899999999999999998865544 468999
Q ss_pred EECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhcccc
Q 012427 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153 (464)
Q Consensus 74 i~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~ 153 (464)
+.+|||+|||++|.+|+++.+.....+.-+++|++|+++|+.|.++.|..++...|+.|+.+.|..++.++...+-..++
T Consensus 188 V~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~ 267 (620)
T KOG0350|consen 188 VNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPP 267 (620)
T ss_pred EecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCC
Confidence 99999999999999999999988877778999999999999999999999999999999999999999998877654332
Q ss_pred ccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccc----
Q 012427 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN---- 229 (464)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~---- 229 (464)
....+|+|+||++|.+.++..+.+++.+++++|+|||+++++..|++|+...+..+....
T Consensus 268 ----------------~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~ 331 (620)
T KOG0350|consen 268 ----------------ECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVAC 331 (620)
T ss_pred ----------------ccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcC
Confidence 124599999999999999988889999999999999999999999999999998877652
Q ss_pred -cccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecC---CccccCcc
Q 012427 230 -ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPE 305 (464)
Q Consensus 230 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 305 (464)
.+-+.....+.+..+.++-... ..+.+....+++|||+..+...+....++.|-..... ...+.++.
T Consensus 332 ~~nii~~~~~~~pt~~~e~~t~~---------~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~ 402 (620)
T KOG0350|consen 332 LDNIIRQRQAPQPTVLSELLTKL---------GKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPS 402 (620)
T ss_pred hhhhhhhcccCCchhhHHHHhhc---------CCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecCh
Confidence 2222222222222222222111 3345667889999999999999999988888544433 46678888
Q ss_pred ccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHh-hcCccceeEeeccCcccHHHHHHHHHHHhcC
Q 012427 306 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384 (464)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 384 (464)
.+.++.+.+....+...+..++......++|+|++|...+.+++..|+ .++.....+..+.|.++...|...++.|..|
T Consensus 403 ~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g 482 (620)
T KOG0350|consen 403 SLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG 482 (620)
T ss_pred hhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999998 6677778888899999999999999999999
Q ss_pred CeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccccchh
Q 012427 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAIG 449 (464)
Q Consensus 385 ~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 449 (464)
+.++|||++++.+|+|+.++++||.|++|.+...|+||+||.+|.|+.|.|+.+.++.+...|.+
T Consensus 483 ~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~k 547 (620)
T KOG0350|consen 483 DINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSK 547 (620)
T ss_pred CceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877764
No 14
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-53 Score=353.99 Aligned_cols=347 Identities=24% Similarity=0.416 Sum_probs=310.7
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
+|++++++.+.+.||+.|+.+|++|+..|++ |+++++++..|+|||.++...+++.+.-+ .+...+||++||++|
T Consensus 33 gl~edlLrgiY~yGfekPS~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~-~r~tQ~lilsPTREL 107 (400)
T KOG0328|consen 33 GLKEDLLRGIYAYGFEKPSAIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDIS-VRETQALILSPTREL 107 (400)
T ss_pred CchHHHHHHHHHhccCCchHHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccc-cceeeEEEecChHHH
Confidence 5999999999999999999999999887776 99999999999999999998888877654 344579999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCc
Q 012427 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (464)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~ 193 (464)
+.|+.+.+..++...++.+....|+.+..+.+.. +.-+.+++.+||+++.+.+.+.. +
T Consensus 108 a~Qi~~vi~alg~~mnvq~hacigg~n~gedikk---------------------ld~G~hvVsGtPGrv~dmikr~~-L 165 (400)
T KOG0328|consen 108 AVQIQKVILALGDYMNVQCHACIGGKNLGEDIKK---------------------LDYGQHVVSGTPGRVLDMIKRRS-L 165 (400)
T ss_pred HHHHHHHHHHhcccccceEEEEecCCccchhhhh---------------------hcccceEeeCCCchHHHHHHhcc-c
Confidence 9999999999999999999999999887766543 33567999999999999988754 7
Q ss_pred CCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEee
Q 012427 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (464)
Q Consensus 194 ~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 273 (464)
.-..+.++|+|||+.+++.+|..++..+++.++. ..|.+++|
T Consensus 166 ~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~--------------------------------------~~Qvv~~S 207 (400)
T KOG0328|consen 166 RTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPP--------------------------------------GAQVVLVS 207 (400)
T ss_pred cccceeEEEeccHHHHHHhhHHHHHHHHHHhCCC--------------------------------------CceEEEEe
Confidence 7778999999999999999999999999998874 44999999
Q ss_pred eeeecCccchhcccccCCeeeecCCccccCccccccceeecc-CCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHH
Q 012427 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (464)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l 352 (464)
||++..+.+..+.++.+|+.+-....+.. .+.+..+++.++ +.+|...|.++.....-..+++||+++.....+.+.+
T Consensus 208 ATlp~eilemt~kfmtdpvrilvkrdelt-lEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm 286 (400)
T KOG0328|consen 208 ATLPHEILEMTEKFMTDPVRILVKRDELT-LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM 286 (400)
T ss_pred ccCcHHHHHHHHHhcCCceeEEEecCCCc-hhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHH
Confidence 99999999999999999988876665433 356777776665 4559999999999888889999999999999999999
Q ss_pred hhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCC
Q 012427 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (464)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~ 432 (464)
++.+ +.+..+||+|+.++|++++..|++|+.++||+|+..++|+|+|.+++||.|++|.+...|+||+||.||.|+.
T Consensus 287 ~~~n---ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRk 363 (400)
T KOG0328|consen 287 REAN---FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK 363 (400)
T ss_pred HhhC---ceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCc
Confidence 9877 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeeCcccccchh
Q 012427 433 GRCFTLLHKDEKKGAIG 449 (464)
Q Consensus 433 g~~~~~~~~~~~~~~~~ 449 (464)
|.++-|+.+++......
T Consensus 364 GvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 364 GVAINFVKSDDLRILRD 380 (400)
T ss_pred ceEEEEecHHHHHHHHH
Confidence 99999998887665543
No 15
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.5e-52 Score=409.70 Aligned_cols=346 Identities=27% Similarity=0.452 Sum_probs=295.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
|+++ +|++.+++++.++||.+|+++|.++++.++. ++++++.+|||+|||.+|.+++++.+... ...+++|||+
T Consensus 8 f~~l-~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~~~~~LIL~ 81 (629)
T PRK11634 8 FADL-GLKAPILEALNDLGYEKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKAPQILVLA 81 (629)
T ss_pred Hhhc-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cCCCeEEEEe
Confidence 4444 4999999999999999999999999888775 89999999999999999999999887654 3456899999
Q ss_pred ccHHHHHHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhh
Q 012427 109 PTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l 187 (464)
||++|+.|+++.+..+.... ++.+..++|+.++..+... +..+++|+|+||+++.+++
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~---------------------l~~~~~IVVgTPgrl~d~l 140 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA---------------------LRQGPQIVVGTPGRLLDHL 140 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---------------------hcCCCCEEEECHHHHHHHH
Confidence 99999999999999887665 7899999999876555332 3456799999999999988
Q ss_pred hcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCce
Q 012427 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (464)
Q Consensus 188 ~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
.+.. +.++++++||+||||+++..+|...+..++..++. ..
T Consensus 141 ~r~~-l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~--------------------------------------~~ 181 (629)
T PRK11634 141 KRGT-LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE--------------------------------------GH 181 (629)
T ss_pred HcCC-cchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC--------------------------------------CC
Confidence 7643 77889999999999999999999888888877653 23
Q ss_pred eeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHH
Q 012427 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (464)
Q Consensus 268 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (464)
+.+++|||++.........++.++..+......... ..+.+.+.......+...+..++......++||||+++..+..
T Consensus 182 q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~-~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~ 260 (629)
T PRK11634 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTR-PDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLE 260 (629)
T ss_pred eEEEEEccCChhHHHHHHHHcCCCeEEEccCccccC-CceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHH
Confidence 789999999888887777777777666544433222 2334444455556677888888887777899999999999999
Q ss_pred HHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhh
Q 012427 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (464)
Q Consensus 348 l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~ 427 (464)
+++.|.+.+ +.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+|
T Consensus 261 l~~~L~~~g---~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtG 337 (629)
T PRK11634 261 VAEALERNG---YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTG 337 (629)
T ss_pred HHHHHHhCC---CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhcccc
Confidence 999999876 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeeCccc
Q 012427 428 RAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 428 R~g~~g~~~~~~~~~~~ 444 (464)
|.|+.|.+++|++..+.
T Consensus 338 RaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 338 RAGRAGRALLFVENRER 354 (629)
T ss_pred CCCCcceEEEEechHHH
Confidence 99999999999987653
No 16
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.4e-52 Score=375.60 Aligned_cols=352 Identities=31% Similarity=0.475 Sum_probs=309.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc---cCCc
Q 012427 26 DCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCL 102 (464)
Q Consensus 26 ~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~---~~~~ 102 (464)
...|+..+ |++.++++++++||.++++.|...++.++ .|+++++.|-||+|||++|++++++.+.+.. ..+-
T Consensus 81 ~~~f~~~~-LS~~t~kAi~~~GF~~MT~VQ~~ti~pll----~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~ 155 (543)
T KOG0342|consen 81 TFRFEEGS-LSPLTLKAIKEMGFETMTPVQQKTIPPLL----EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGT 155 (543)
T ss_pred hhHhhccc-cCHHHHHHHHhcCccchhHHHHhhcCccC----CCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCe
Confidence 44456664 99999999999999999999999855544 5999999999999999999999999998753 2344
Q ss_pred cEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCch
Q 012427 103 RALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (464)
Q Consensus 103 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~ 181 (464)
.++|++||++|+.|++.+++++...+ ++.+..+.|+.....+.. ++.++++|+|+||+
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~---------------------kl~k~~niliATPG 214 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD---------------------KLVKGCNILIATPG 214 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH---------------------HhhccccEEEeCCc
Confidence 69999999999999999999999988 899999999988665543 34567899999999
Q ss_pred HHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCC
Q 012427 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (464)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
+|.+++.+...+...+.+++|+||||++++.+|.+.+.+|+..++..+
T Consensus 215 RLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~r-------------------------------- 262 (543)
T KOG0342|consen 215 RLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQR-------------------------------- 262 (543)
T ss_pred hHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccc--------------------------------
Confidence 999999998888888889999999999999999999999999887443
Q ss_pred CCCCceeeEEeeeeeecCccchhcccccC-CeeeecCC-ccccCccccccceeeccCCchHHHHHHHHHhhCC-CeEEEE
Q 012427 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHH-PLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVF 338 (464)
Q Consensus 262 ~~~~~~~~i~~sat~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~lVf 338 (464)
|..+||||.+.....+....+.. +..+.... ......+.+.+.++.++...++..+..+++++.+ .+++||
T Consensus 263 ------qt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF 336 (543)
T KOG0342|consen 263 ------QTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVF 336 (543)
T ss_pred ------eeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEE
Confidence 88999999999988888776654 66665443 3344566777878888888888999999988876 899999
Q ss_pred ecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcch
Q 012427 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (464)
Q Consensus 339 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~ 418 (464)
|++.......++.|+... ++|..+||+++...|..+..+|...+..||+||++.++|+|+|+++.||++++|.++.+
T Consensus 337 ~sT~~~vk~~~~lL~~~d---lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~ 413 (543)
T KOG0342|consen 337 FSTCMSVKFHAELLNYID---LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQ 413 (543)
T ss_pred echhhHHHHHHHHHhhcC---CchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHH
Confidence 999999999999998655 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCccEEEEeeCccc
Q 012427 419 YIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 419 ~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
|+||+||.+|.|+.|+++.++.+.+.
T Consensus 414 YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 414 YIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred HHHHhccccccCCCceEEEEeChhHH
Confidence 99999999999999999999977643
No 17
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-52 Score=374.91 Aligned_cols=345 Identities=36% Similarity=0.593 Sum_probs=306.3
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc--CCccEEEEcccHH
Q 012427 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRD 112 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~--~~~~~lil~P~~~ 112 (464)
|+--+++++..+||..|+|+|...++-.+- |++++.++.||+|||.+|++|+++++...+. ...+||||+||++
T Consensus 188 LSRPlLka~~~lGy~~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRE 263 (691)
T KOG0338|consen 188 LSRPLLKACSTLGYKKPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRE 263 (691)
T ss_pred cchHHHHHHHhcCCCCCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHH
Confidence 899999999999999999999998775544 9999999999999999999999999987643 3457999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCC
Q 012427 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (464)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~ 192 (464)
|+.|.+...++++.+..+.+++..|+-+...+-.. +.++++|+|+||++|.+++.+...
T Consensus 264 LaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~---------------------LRs~PDIVIATPGRlIDHlrNs~s 322 (691)
T KOG0338|consen 264 LAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAV---------------------LRSRPDIVIATPGRLIDHLRNSPS 322 (691)
T ss_pred HHHHHHHHHHHHHhhccceeeeeecCccHHHHHHH---------------------HhhCCCEEEecchhHHHHhccCCC
Confidence 99999999999999999999999999887665433 456679999999999999999999
Q ss_pred cCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEe
Q 012427 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (464)
Q Consensus 193 ~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (464)
|+++++.++|+|||++|++.+|.+.+.+|+++++..+ |..+|
T Consensus 323 f~ldsiEVLvlDEADRMLeegFademnEii~lcpk~R--------------------------------------QTmLF 364 (691)
T KOG0338|consen 323 FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNR--------------------------------------QTMLF 364 (691)
T ss_pred ccccceeEEEechHHHHHHHHHHHHHHHHHHhccccc--------------------------------------cceee
Confidence 9999999999999999999999999999999988655 88999
Q ss_pred eeeeecCccchhcccccCCeeeecCCccccCccccccceeec--cCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHH
Q 012427 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC--ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (464)
Q Consensus 273 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~ 350 (464)
|||+...+..+....+.+|+.+.........+...+.+.... ....+...+..++...-..+++||+.+.+.|.++.-
T Consensus 365 SATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~I 444 (691)
T KOG0338|consen 365 SATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRI 444 (691)
T ss_pred hhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHH
Confidence 999999999999999999998877766555544444443322 344566777777777667899999999999999999
Q ss_pred HHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCC
Q 012427 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (464)
Q Consensus 351 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 430 (464)
.|.-.| +++.-+||.++.++|-+.++.|+.+++++||||+.+++|+||+++..||.|..|.+...|+||+||..|.|
T Consensus 445 llGLlg---l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAG 521 (691)
T KOG0338|consen 445 LLGLLG---LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAG 521 (691)
T ss_pred HHHHhh---chhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcc
Confidence 886555 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeeCcccc
Q 012427 431 QLGRCFTLLHKDEKK 445 (464)
Q Consensus 431 ~~g~~~~~~~~~~~~ 445 (464)
+.|..++|+..++.+
T Consensus 522 RaGrsVtlvgE~dRk 536 (691)
T KOG0338|consen 522 RAGRSVTLVGESDRK 536 (691)
T ss_pred cCcceEEEeccccHH
Confidence 999999999877443
No 18
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.5e-51 Score=372.47 Aligned_cols=383 Identities=27% Similarity=0.413 Sum_probs=325.2
Q ss_pred CCCCccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHH
Q 012427 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (464)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~ 94 (464)
...|..+.+|+..+ +|.++++.+++.||..|+|+|+.+++-.+ ..+++|..+.||||||.+|+++++..+
T Consensus 238 ~~lpnplrnwEE~~------~P~e~l~~I~~~~y~eptpIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~I 307 (673)
T KOG0333|consen 238 GRLPNPLRNWEESG------FPLELLSVIKKPGYKEPTPIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWI 307 (673)
T ss_pred CCCCccccChhhcC------CCHHHHHHHHhcCCCCCchHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHH
Confidence 34455556666653 99999999999999999999999966444 489999999999999999999999888
Q ss_pred Hhhc--------cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHH
Q 012427 95 SNRA--------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166 (464)
Q Consensus 95 ~~~~--------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (464)
...+ ..++.++|+.||++|++|+.++-.+++..+++++..+.|+....++.
T Consensus 308 sslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~--------------------- 366 (673)
T KOG0333|consen 308 SSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG--------------------- 366 (673)
T ss_pred HcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh---------------------
Confidence 6543 34678999999999999999999999999999999999998876652
Q ss_pred HhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccc---cccccc
Q 012427 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS---TFLPSA 243 (464)
Q Consensus 167 ~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 243 (464)
-.+..+|+|+|+||+.|.+.+.+.. +.++...++|+|||+++++.+|.+.+..++...+........+.. ..+...
T Consensus 367 fqls~gceiviatPgrLid~Lenr~-lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~ 445 (673)
T KOG0333|consen 367 FQLSMGCEIVIATPGRLIDSLENRY-LVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKN 445 (673)
T ss_pred hhhhccceeeecCchHHHHHHHHHH-HHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhh
Confidence 2356789999999999999998754 668889999999999999999999999999988876544322211 111111
Q ss_pred cccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHH
Q 012427 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323 (464)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 323 (464)
+.... ...+.+.||||+++....+...++.+|..+..+... .....+++.......+.+...|
T Consensus 446 ~~~~k----------------~yrqT~mftatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL 508 (673)
T KOG0333|consen 446 FSSSK----------------KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKL 508 (673)
T ss_pred ccccc----------------ceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHH
Confidence 11111 234899999999999999999999999888766544 3334555555666777889999
Q ss_pred HHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCC
Q 012427 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403 (464)
Q Consensus 324 ~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~ 403 (464)
.+++...-..++|||++..+.|+.+++.|.+.+ +++..+||+-+.++|+..+..|++|..+|||||+++++|||+|+
T Consensus 509 ~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g---~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpn 585 (673)
T KOG0333|consen 509 IEILESNFDPPIIIFVNTKKGADALAKILEKAG---YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPN 585 (673)
T ss_pred HHHHHhCCCCCEEEEEechhhHHHHHHHHhhcc---ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCc
Confidence 999999878899999999999999999999887 99999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccccchh
Q 012427 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAIG 449 (464)
Q Consensus 404 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 449 (464)
+++||.|+.+.|+.+|.||+||.||.|+.|.++.|+...+...|+.
T Consensus 586 VSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 586 VSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYD 631 (673)
T ss_pred cceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHH
Confidence 9999999999999999999999999999999999999999887764
No 19
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-51 Score=373.01 Aligned_cols=358 Identities=29% Similarity=0.442 Sum_probs=324.5
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc---cCCccE
Q 012427 28 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRA 104 (464)
Q Consensus 28 ~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~---~~~~~~ 104 (464)
.|.++| |+..+.+.|++.+|..++.+|+.+++..+ .|++++-.+-||+|||++|++|+++.+.+.+ ..+.=+
T Consensus 70 kF~dlp-ls~~t~kgLke~~fv~~teiQ~~~Ip~aL----~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGa 144 (758)
T KOG0343|consen 70 KFADLP-LSQKTLKGLKEAKFVKMTEIQRDTIPMAL----QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGA 144 (758)
T ss_pred hHHhCC-CchHHHHhHhhcCCccHHHHHHhhcchhc----cCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCcee
Confidence 455554 99999999999999999999999966555 4999999999999999999999999997642 344459
Q ss_pred EEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHH
Q 012427 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184 (464)
Q Consensus 105 lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~ 184 (464)
||++||++|+-|+++.+.+.+..++.+++++.|+.+...+...+ ++.+|+||||++|+
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi----------------------~~mNILVCTPGRLL 202 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI----------------------SQMNILVCTPGRLL 202 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh----------------------hcCCeEEechHHHH
Confidence 99999999999999999999999999999999999887764432 45799999999999
Q ss_pred HhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCC
Q 012427 185 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (464)
Q Consensus 185 ~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
..+.....+..+++.++|+|||+++++.+|...+..|+..++..
T Consensus 203 QHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~------------------------------------ 246 (758)
T KOG0343|consen 203 QHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKK------------------------------------ 246 (758)
T ss_pred HHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChh------------------------------------
Confidence 99988888999999999999999999999999999999888743
Q ss_pred CceeeEEeeeeeecCccchhcccccCCeeeecCCc-cccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChh
Q 012427 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 343 (464)
Q Consensus 265 ~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~ 343 (464)
.|.++||||.......+....+.+|..+..-.. ....|..+.++++.++...|+..|...+..+...++|||++|.+
T Consensus 247 --RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscK 324 (758)
T KOG0343|consen 247 --RQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCK 324 (758)
T ss_pred --heeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhh
Confidence 489999999999999999999999988776643 36788999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhh
Q 012427 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423 (464)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~ 423 (464)
++..+++.+.+. .+++.+..+||+|+...|-++...|......+|+||+++++|+|+|.+++||+++.|.++.+|+||+
T Consensus 325 qvkf~~e~F~rl-rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRv 403 (758)
T KOG0343|consen 325 QVKFLYEAFCRL-RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRV 403 (758)
T ss_pred HHHHHHHHHHhc-CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHh
Confidence 999999999886 4668899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCccEEEEeeCcccccchhhc
Q 012427 424 GRTARAGQLGRCFTLLHKDEKKGAIGRS 451 (464)
Q Consensus 424 GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 451 (464)
||..|.+..|.+.+++...+...++.+.
T Consensus 404 GRtAR~~~~G~sll~L~psEeE~~l~~L 431 (758)
T KOG0343|consen 404 GRTARYKERGESLLMLTPSEEEAMLKKL 431 (758)
T ss_pred hhhhcccCCCceEEEEcchhHHHHHHHH
Confidence 9999999999999999999877766443
No 20
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2e-50 Score=389.36 Aligned_cols=351 Identities=24% Similarity=0.411 Sum_probs=284.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE
Q 012427 28 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (464)
Q Consensus 28 ~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil 107 (464)
.|+.+ ++++.+.+.+.++||..|+++|.++++.+++ ++++++.+|||+|||++|+++++..+... ..+.++||+
T Consensus 29 ~~~~l-~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~-~~~~~~lil 102 (401)
T PTZ00424 29 SFDAL-KLNEDLLRGIYSYGFEKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYD-LNACQALIL 102 (401)
T ss_pred CHhhC-CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCC-CCCceEEEE
Confidence 35555 3999999999999999999999999888776 89999999999999999999999877643 245589999
Q ss_pred cccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhh
Q 012427 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (464)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l 187 (464)
+|+++|+.|+.+.+..++...++.+....|+....... ..+..+++|+|+||+++.+.+
T Consensus 103 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~Ivv~Tp~~l~~~l 161 (401)
T PTZ00424 103 APTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDI---------------------NKLKAGVHMVVGTPGRVYDMI 161 (401)
T ss_pred CCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHH---------------------HHHcCCCCEEEECcHHHHHHH
Confidence 99999999999999999877778888888877654332 233456799999999999988
Q ss_pred hcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCce
Q 012427 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (464)
Q Consensus 188 ~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
.+.. +.+++++++|+||||++.+.++...+..++.... +..
T Consensus 162 ~~~~-~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~--------------------------------------~~~ 202 (401)
T PTZ00424 162 DKRH-LRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP--------------------------------------PDV 202 (401)
T ss_pred HhCC-cccccccEEEEecHHHHHhcchHHHHHHHHhhCC--------------------------------------CCc
Confidence 7644 6688999999999999988888777766665443 234
Q ss_pred eeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeecc-CCchHHHHHHHHHhhCCCeEEEEecChhhHH
Q 012427 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (464)
Q Consensus 268 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (464)
+.+++|||++.........++..+..+....... ....+..+..... ...+...+..++......++||||++++.++
T Consensus 203 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~ 281 (401)
T PTZ00424 203 QVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVD 281 (401)
T ss_pred EEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHH
Confidence 8999999997766555555555554443322221 2223333333333 2335555666666666779999999999999
Q ss_pred HHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhh
Q 012427 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (464)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~ 426 (464)
.+++.|++.+ +.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+
T Consensus 282 ~l~~~l~~~~---~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRa 358 (401)
T PTZ00424 282 YLTKKMHERD---FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRS 358 (401)
T ss_pred HHHHHHHHCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeeccccc
Confidence 9999998765 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeeCcccccch
Q 012427 427 ARAGQLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 427 ~R~g~~g~~~~~~~~~~~~~~~ 448 (464)
||.|+.|.|+.++.+++...+.
T Consensus 359 gR~g~~G~~i~l~~~~~~~~~~ 380 (401)
T PTZ00424 359 GRFGRKGVAINFVTPDDIEQLK 380 (401)
T ss_pred ccCCCCceEEEEEcHHHHHHHH
Confidence 9999999999999887665444
No 21
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-51 Score=351.32 Aligned_cols=350 Identities=30% Similarity=0.465 Sum_probs=305.1
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE
Q 012427 28 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (464)
Q Consensus 28 ~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil 107 (464)
+|+.| ||.+|+.+.++++|+..|+|.|..+++.|++ |++++-++-||+|||.+|.+++++.+.... .+.-++|+
T Consensus 8 ~F~~L-Gl~~Wlve~l~~l~i~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP-~giFalvl 81 (442)
T KOG0340|consen 8 PFSIL-GLSPWLVEQLKALGIKKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDP-YGIFALVL 81 (442)
T ss_pred chhhc-CccHHHHHHHHHhcCCCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCC-CcceEEEe
Confidence 45566 7999999999999999999999999888887 999999999999999999999999998875 45569999
Q ss_pred cccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhh
Q 012427 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (464)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l 187 (464)
+||++|+-|+++.|..+....++++..++|+.+.--+. ..+..+++++|+||+++...+
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa---------------------~~L~~rPHvVvatPGRlad~l 140 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQA---------------------AILSDRPHVVVATPGRLADHL 140 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhh---------------------hhcccCCCeEecCcccccccc
Confidence 99999999999999999999999999999998754443 235567899999999999998
Q ss_pred hcCC---CcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCC
Q 012427 188 NATR---GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (464)
Q Consensus 188 ~~~~---~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
.+.. .+.++++.++|+|||+++.+..|.+.++-+..-++..
T Consensus 141 ~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~------------------------------------ 184 (442)
T KOG0340|consen 141 SSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKP------------------------------------ 184 (442)
T ss_pred ccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCc------------------------------------
Confidence 8763 2448889999999999999999988888887665533
Q ss_pred CceeeEEeeeeeecCccchhcccccCCeeee-cCCccccCccccccceeeccCCchHHHHHHHHHhhC---CCeEEEEec
Q 012427 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQSLG---EEKCIVFTS 340 (464)
Q Consensus 265 ~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~lVf~~ 340 (464)
.|.++||||+..............+..+. .........+....-++.++...+..++..+++... .+.+++|++
T Consensus 185 --RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvn 262 (442)
T KOG0340|consen 185 --RQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVN 262 (442)
T ss_pred --cceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEee
Confidence 38899999998888777666655532222 222444666777778888999999999999998764 468999999
Q ss_pred ChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhh
Q 012427 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (464)
Q Consensus 341 s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~ 420 (464)
+..+|+.++..|+..+ +.+..+|+.|+..+|-..+.+|+++..+|||||+.+++|+|+|.++.||.++.|..+.+|+
T Consensus 263 ttr~cQ~l~~~l~~le---~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yi 339 (442)
T KOG0340|consen 263 TTRECQLLSMTLKNLE---VRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYI 339 (442)
T ss_pred hhHHHHHHHHHHhhhc---eeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHH
Confidence 9999999999999877 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCccEEEEeeCcccc
Q 012427 421 HRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 421 Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
||+||..|.|+.|.++.|+...|.+
T Consensus 340 HRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 340 HRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred HhhcchhcccCCcceEEEechhhHH
Confidence 9999999999999999999876654
No 22
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-50 Score=342.63 Aligned_cols=346 Identities=27% Similarity=0.469 Sum_probs=316.4
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
.|..+++..+-+.||..|+|+|.++++.++ .|+++++.+..|+|||-+|.+|+++.+.... ..-.++|++||++|
T Consensus 91 ~Lkr~LLmgIfe~G~ekPSPiQeesIPiaL----tGrdiLaRaKNGTGKT~a~~IP~Lekid~~~-~~IQ~~ilVPtrel 165 (459)
T KOG0326|consen 91 CLKRELLMGIFEKGFEKPSPIQEESIPIAL----TGRDILARAKNGTGKTAAYCIPVLEKIDPKK-NVIQAIILVPTREL 165 (459)
T ss_pred hhhHHHHHHHHHhccCCCCCccccccceee----cchhhhhhccCCCCCccceechhhhhcCccc-cceeEEEEeecchh
Confidence 589999999999999999999999966555 5999999999999999999999999988653 44579999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCc
Q 012427 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (464)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~ 193 (464)
|-|..+.++++.+.+++.+....|+++..+.+-. +....+++|+||++++++..+. .-
T Consensus 166 ALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~R---------------------l~~~VH~~vgTPGRIlDL~~Kg-Va 223 (459)
T KOG0326|consen 166 ALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMR---------------------LNQTVHLVVGTPGRILDLAKKG-VA 223 (459)
T ss_pred hHHHHHHHHHHhcccCeEEEEecCCcccccceee---------------------ecCceEEEEcCChhHHHHHhcc-cc
Confidence 9999999999999999999999999987765432 3455699999999999998874 35
Q ss_pred CCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEee
Q 012427 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (464)
Q Consensus 194 ~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 273 (464)
.+++..++|+|||+.+++..|.+.+++++..++... |.+++|
T Consensus 224 ~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r--------------------------------------QillyS 265 (459)
T KOG0326|consen 224 DLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER--------------------------------------QILLYS 265 (459)
T ss_pred cchhceEEEechhhhhhchhhhhHHHHHHHhCCccc--------------------------------------eeeEEe
Confidence 688999999999999999999999999999887544 899999
Q ss_pred eeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHh
Q 012427 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (464)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~ 353 (464)
||++-....+...++++|..++.-++ .....+..|+..+.+..|...+..++.+..-...+|||+|....+.+++.+.
T Consensus 266 ATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKIT 343 (459)
T KOG0326|consen 266 ATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKIT 343 (459)
T ss_pred cccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHH
Confidence 99999999999999999999987765 4556778899999999999999999999988899999999999999999999
Q ss_pred hcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCc
Q 012427 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (464)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 433 (464)
+.| +.+.++|+.|..+.|..++..|++|.++.||||+.+-+|+|++.++.||.++.|.+..+|.||+||+||.|..|
T Consensus 344 elG---yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 344 ELG---YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred hcc---chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 888 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeCcccccchh
Q 012427 434 RCFTLLHKDEKKGAIG 449 (464)
Q Consensus 434 ~~~~~~~~~~~~~~~~ 449 (464)
.++.++..++....+.
T Consensus 421 lAInLityedrf~L~~ 436 (459)
T KOG0326|consen 421 LAINLITYEDRFNLYR 436 (459)
T ss_pred eEEEEEehhhhhhHHH
Confidence 9999999998887664
No 23
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-49 Score=358.83 Aligned_cols=348 Identities=29% Similarity=0.437 Sum_probs=300.0
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc---------CCccE
Q 012427 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---------RCLRA 104 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~---------~~~~~ 104 (464)
.+++.+...++..+|..|+++|+.+++.+.. |++++++|+||+|||.+|++|++..++.... ..+++
T Consensus 80 ~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~ 155 (482)
T KOG0335|consen 80 ILGEALAGNIKRSGYTKPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRA 155 (482)
T ss_pred chhHHHhhccccccccCCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCce
Confidence 3888999999999999999999999666554 9999999999999999999999999987642 35789
Q ss_pred EEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHH
Q 012427 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184 (464)
Q Consensus 105 lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~ 184 (464)
+|++||++|+.|++.+.+++....++++...+|+.+...+... +.++++|+|+||++|.
T Consensus 156 lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~---------------------~~~gcdIlvaTpGrL~ 214 (482)
T KOG0335|consen 156 LILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRF---------------------IKRGCDILVATPGRLK 214 (482)
T ss_pred EEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhh---------------------hccCccEEEecCchhh
Confidence 9999999999999999999999999999999999877665433 4578899999999999
Q ss_pred HhhhcCCCcCCCCccEEEEehhhHhhh-HhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCC
Q 012427 185 DHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (464)
Q Consensus 185 ~~l~~~~~~~~~~~~~iIvDE~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
+++.... +.+++++++|+|||++|++ .+|.+.+++++........
T Consensus 215 d~~e~g~-i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~--------------------------------- 260 (482)
T KOG0335|consen 215 DLIERGK-ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPK--------------------------------- 260 (482)
T ss_pred hhhhcce-eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCc---------------------------------
Confidence 9999855 8899999999999999999 8999999999976653221
Q ss_pred CCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhC----CC-----e
Q 012427 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG----EE-----K 334 (464)
Q Consensus 264 ~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~-----~ 334 (464)
...|.++||||.+.........++.+..+...........+.+.+-...+.+..+...+.+++.... .+ +
T Consensus 261 -~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~ 339 (482)
T KOG0335|consen 261 -NNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEK 339 (482)
T ss_pred -cceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccce
Confidence 3558999999999998887777777633332223333445566666667778888888888886443 23 8
Q ss_pred EEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCC
Q 012427 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 414 (464)
Q Consensus 335 ~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~ 414 (464)
++|||.+++.|..++..|...+ +++..+||.-+..+|.+.++.|+.|.+.+||||+++++|+|+|+++|||.|+.|.
T Consensus 340 tlvFvEt~~~~d~l~~~l~~~~---~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~ 416 (482)
T KOG0335|consen 340 TLVFVETKRGADELAAFLSSNG---YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPA 416 (482)
T ss_pred EEEEeeccchhhHHHHHHhcCC---CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCc
Confidence 9999999999999999999877 8999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012427 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 415 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
...+|+||+||+||.|+.|.++.|++..+.
T Consensus 417 d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~ 446 (482)
T KOG0335|consen 417 DIDDYVHRIGRTGRVGNGGRATSFFNEKNQ 446 (482)
T ss_pred chhhHHHhccccccCCCCceeEEEeccccc
Confidence 999999999999999999999999984443
No 24
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-48 Score=353.10 Aligned_cols=375 Identities=34% Similarity=0.508 Sum_probs=310.0
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhh
Q 012427 19 VDVSLFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (464)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~ 97 (464)
.....|.-..|..| +|++-+...++. |++..|+..|..+++.+++ |+++++.++||+|||++|++|+++.+..-
T Consensus 128 v~e~~fts~~f~~L-GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m 202 (708)
T KOG0348|consen 128 VSEAPFTSAAFASL-GLHPHLVSHLNTKMKISAPTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAM 202 (708)
T ss_pred ccccccccccchhc-CCCHHHHHHHHHHhccCccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhc
Confidence 34445777778888 799999999975 8999999999999888776 99999999999999999999999998764
Q ss_pred c-----cCCccEEEEcccHHHHHHHHHHHHHhccccC-ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhc
Q 012427 98 A-----VRCLRALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (464)
Q Consensus 98 ~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (464)
. ..++-+||++||++|+.|.++.++++...+- |--+.+.|+..-..+. .++.+
T Consensus 203 ~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEK---------------------ARLRK 261 (708)
T KOG0348|consen 203 EPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEK---------------------ARLRK 261 (708)
T ss_pred CccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHH---------------------HHHhc
Confidence 3 2466799999999999999999999877653 4446666665544332 34668
Q ss_pred CCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhh
Q 012427 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (464)
Q Consensus 172 ~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (464)
+++|+|+||++|.+.+.+...+.++.++++|+||+|++++-+|...+..|+..+.+....
T Consensus 262 GiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~-------------------- 321 (708)
T KOG0348|consen 262 GINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNA-------------------- 321 (708)
T ss_pred CceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccch--------------------
Confidence 899999999999999999888889999999999999999999999999999877441100
Q ss_pred ccccccccCC-CCCCceeeEEeeeeeecCccchhcccccCCeeeecCC------------------------ccccCccc
Q 012427 252 RCGVERGFKD-KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE------------------------TRYKLPER 306 (464)
Q Consensus 252 ~~~~~~~~~~-~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~ 306 (464)
...+ ......+.+++|||+......+....+++|+.+..+. ....+|+.
T Consensus 322 ------e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeq 395 (708)
T KOG0348|consen 322 ------ECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQ 395 (708)
T ss_pred ------hcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHH
Confidence 0011 1112457899999999999999999999888776221 11345566
Q ss_pred cccceeeccCCchHHHHHHHHHhh----CCCeEEEEecChhhHHHHHHHHhhcC-------------------ccceeEe
Q 012427 307 LESYKLICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFG-------------------ELRIKIK 363 (464)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~l~~~~-------------------~~~~~~~ 363 (464)
+...+..++.+.++..|..++.+. ...++|||+++.+..+.=+..|.+.- ..+.++.
T Consensus 396 L~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~ 475 (708)
T KOG0348|consen 396 LLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFY 475 (708)
T ss_pred hhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEE
Confidence 667778888999999888887654 56699999999999887777776421 1345788
Q ss_pred eccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcc
Q 012427 364 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (464)
Q Consensus 364 ~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 443 (464)
.+||.|..++|..++..|...+..||+||+++++|+|+|++++||.|++|.++.+|+||+||..|.|.+|.++.|+.+.+
T Consensus 476 rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~E 555 (708)
T KOG0348|consen 476 RLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSE 555 (708)
T ss_pred EecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccH
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999888
Q ss_pred cc
Q 012427 444 KK 445 (464)
Q Consensus 444 ~~ 445 (464)
.+
T Consensus 556 ae 557 (708)
T KOG0348|consen 556 AE 557 (708)
T ss_pred HH
Confidence 77
No 25
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-49 Score=357.28 Aligned_cols=355 Identities=31% Similarity=0.440 Sum_probs=286.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHHHhhc---------
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRA--------- 98 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~-~~~li~~~tG~GKT~~~~~~~l~~~~~~~--------- 98 (464)
|.++ +||..++++|..+||.+|+++|...++.++. | .+++-.|.||||||++|-+|+++.+...+
T Consensus 183 W~~l-~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~----gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 183 WKNL-FLPMEILRALSNLGFSRPTEIQSLVLPAAIR----GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred HhcC-CCCHHHHHHHHhcCCCCCccchhhcccHhhc----cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 4444 4999999999999999999999998666554 6 89999999999999999999998554432
Q ss_pred -cCCcc--EEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcE
Q 012427 99 -VRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175 (464)
Q Consensus 99 -~~~~~--~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 175 (464)
.++++ .||++||++|+.|+.+-+..++...++++..+.|+-...++.+.+- ..++|
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~---------------------~~p~I 316 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLN---------------------QRPDI 316 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHh---------------------cCCCE
Confidence 23445 9999999999999999999999999999999999999888755433 35699
Q ss_pred EEeCchHHHHhhhcCCCc--CCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhcc
Q 012427 176 LVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253 (464)
Q Consensus 176 iI~T~~~l~~~l~~~~~~--~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (464)
+|+||++||.++.....+ ++.++.++|+||+++|+..++.+.+..++..+.....+
T Consensus 317 VVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~---------------------- 374 (731)
T KOG0347|consen 317 VVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKN---------------------- 374 (731)
T ss_pred EEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcc----------------------
Confidence 999999999999775542 57889999999999999999999999999888732221
Q ss_pred ccccccCCCCCCceeeEEeeeeeecCccchh----------------------cccc-cCCeeeecCCccccCccccccc
Q 012427 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLA----------------------QLDL-HHPLFLTTGETRYKLPERLESY 310 (464)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~----------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~ 310 (464)
...|.++||||+.-....-. ..++ .+|.++......... ..+..-
T Consensus 375 -----------~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta-~~l~Es 442 (731)
T KOG0347|consen 375 -----------RQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATA-STLTES 442 (731)
T ss_pred -----------cccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHH-HHHHHH
Confidence 44589999999873321110 1111 233444443333222 222222
Q ss_pred eeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEE
Q 012427 311 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (464)
Q Consensus 311 ~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi 390 (464)
.+.|+..++...+..++..+ ++++||||++++.+.+++-+|+..+ +....+|+.|...+|..-+++|+.....+||
T Consensus 443 ~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~---i~p~~LHA~M~QKqRLknLEkF~~~~~~VLi 518 (731)
T KOG0347|consen 443 LIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLD---IPPLPLHASMIQKQRLKNLEKFKQSPSGVLI 518 (731)
T ss_pred hhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcC---CCCchhhHHHHHHHHHHhHHHHhcCCCeEEE
Confidence 33446666666655555554 6789999999999999999998766 8899999999999999999999999999999
Q ss_pred EcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccccc
Q 012427 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKGA 447 (464)
Q Consensus 391 ~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 447 (464)
||+++.+|+|||++.|||+|..|.+...|+||.||..|.+..|..++++.+.+..-+
T Consensus 519 aTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~ 575 (731)
T KOG0347|consen 519 ATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPL 575 (731)
T ss_pred eehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHH
Confidence 999999999999999999999999999999999999999999999999998875443
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-48 Score=343.60 Aligned_cols=351 Identities=30% Similarity=0.458 Sum_probs=305.6
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc-----cCCcc
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLR 103 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~-----~~~~~ 103 (464)
|.++ +|++++++++.+.|++.|+.+|..+++-+++ |++++..|-||||||.+|++|+++.+.... ..++.
T Consensus 21 Fe~~-gLD~RllkAi~~lG~ekpTlIQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~s 95 (569)
T KOG0346|consen 21 FEEF-GLDSRLLKAITKLGWEKPTLIQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPS 95 (569)
T ss_pred HHHh-CCCHHHHHHHHHhCcCCcchhhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccce
Confidence 3444 5999999999999999999999999666655 999999999999999999999999997642 34678
Q ss_pred EEEEcccHHHHHHHHHHHHHhccccC--ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCch
Q 012427 104 ALVVLPTRDLALQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (464)
Q Consensus 104 ~lil~P~~~L~~q~~~~~~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~ 181 (464)
++|++||++|++|.+..+.++...++ +++.-+..+.+.. .....+...++|+|+||.
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sds---------------------v~~~~L~d~pdIvV~TP~ 154 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDS---------------------VNSVALMDLPDIVVATPA 154 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchH---------------------HHHHHHccCCCeEEeChH
Confidence 99999999999999999998766554 3333333222211 122345566899999999
Q ss_pred HHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCC
Q 012427 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (464)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
.+.+.+..+....+..+.++|+||||.+.+-+|.+.+..+...++.
T Consensus 155 ~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr---------------------------------- 200 (569)
T KOG0346|consen 155 KLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPR---------------------------------- 200 (569)
T ss_pred HHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCc----------------------------------
Confidence 9999988766567888999999999999999999999999988873
Q ss_pred CCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh-hCCCeEEEEec
Q 012427 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTS 340 (464)
Q Consensus 262 ~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~lVf~~ 340 (464)
..|.+++|||+..++..+...++++|++....+.+...+..+.+|.+.|.+..|...+..+++. ...++.|+|++
T Consensus 201 ----~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVN 276 (569)
T KOG0346|consen 201 ----IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVN 276 (569)
T ss_pred ----hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEe
Confidence 3388999999999999999999999999999999888899999999999999999999888875 47889999999
Q ss_pred ChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc---------------------------
Q 012427 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD--------------------------- 393 (464)
Q Consensus 341 s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~--------------------------- 393 (464)
+++.|.++.-.|.+.| ++.++++|.++...|.-++++|..|-++|+|||+
T Consensus 277 tIdr~YrLkLfLeqFG---iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkks 353 (569)
T KOG0346|consen 277 TIDRCYRLKLFLEQFG---IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKS 353 (569)
T ss_pred chhhhHHHHHHHHHhC---cHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCcccc
Confidence 9999999999999988 9999999999999999999999999999999998
Q ss_pred --------cccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012427 394 --------AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 394 --------~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
-.++|||+.++++|+.++.|.++..|+||+||.+|.++.|.++.|+...+..+
T Consensus 354 kkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g 414 (569)
T KOG0346|consen 354 KKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFG 414 (569)
T ss_pred ccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhh
Confidence 13579999999999999999999999999999999999999999998876553
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.6e-47 Score=385.46 Aligned_cols=348 Identities=20% Similarity=0.259 Sum_probs=261.0
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
.|++.+.+.++++||.+|+++|.++++.+++ |+|+++.+|||||||++|++|+++.+..+ .+.++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHH
Confidence 3899999999999999999999999888775 99999999999999999999999998764 35689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCC--
Q 012427 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-- 191 (464)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~-- 191 (464)
+.|+.+.++.+. ..++++..+.|+.+...+ ..+..+++|+|+||+++...+....
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r----------------------~~i~~~~~IivtTPd~L~~~~L~~~~~ 150 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPTEER----------------------RWAREHARYVLTNPDMLHRGILPSHAR 150 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCHHHH----------------------HHHhcCCCEEEEChHHHHHhhccchhH
Confidence 999999999987 347888888888764332 2334567999999999975332211
Q ss_pred -CcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeE
Q 012427 192 -GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (464)
Q Consensus 192 -~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (464)
...++++++||+||+|.+.. .|+..+..++..+..... ......|++
T Consensus 151 ~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~-------------------------------~~g~~~q~i 198 (742)
T TIGR03817 151 WARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCA-------------------------------RYGASPVFV 198 (742)
T ss_pred HHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHH-------------------------------hcCCCCEEE
Confidence 12267899999999999854 466666555554322110 001234899
Q ss_pred EeeeeeecCccchhcccccCCeeeecCCccccCccccccceeecc-----------------CCchHHHHHHHHHhhCCC
Q 012427 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-----------------SKLKPLYLVALLQSLGEE 333 (464)
Q Consensus 271 ~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~l~~~~~~ 333 (464)
++|||+.+... .....+..+......... . .....+....+ ...+...+..++. .+.
T Consensus 199 ~~SATi~n~~~-~~~~l~g~~~~~i~~~~~-~--~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~ 272 (742)
T TIGR03817 199 LASATTADPAA-AASRLIGAPVVAVTEDGS-P--RGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGA 272 (742)
T ss_pred EEecCCCCHHH-HHHHHcCCCeEEECCCCC-C--cCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCC
Confidence 99999976544 333334444333211111 1 10011111000 0122233444443 367
Q ss_pred eEEEEecChhhHHHHHHHHhhcC-----ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEE
Q 012427 334 KCIVFTSSVESTHRLCTLLNHFG-----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (464)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi 408 (464)
++||||+|++.++.+++.+++.- ..+..+..+||+++.++|.+++++|++|+.++||||++++.|||+|++++||
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI 352 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVV 352 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEE
Confidence 99999999999999999987631 1236788999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccccch
Q 012427 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 409 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 448 (464)
+++.|.+..+|+||+||+||.|+.|.++++..++..+.++
T Consensus 353 ~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~ 392 (742)
T TIGR03817 353 IAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYL 392 (742)
T ss_pred EeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHH
Confidence 9999999999999999999999999999888765555444
No 28
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-48 Score=338.03 Aligned_cols=353 Identities=29% Similarity=0.456 Sum_probs=301.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHh-----hccCC
Q 012427 27 CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRC 101 (464)
Q Consensus 27 ~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~-----~~~~~ 101 (464)
|.|++-.+-.+++.+.+++.||..|+|+|.+||+.++. |.+++..+.||+|||++++++.+..+.. .+..+
T Consensus 219 ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQ----G~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 219 CTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQ----GIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeec----CcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 34444335688999999999999999999999887765 9999999999999999999987655533 23456
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCch
Q 012427 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (464)
Q Consensus 102 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~ 181 (464)
+.+|+++||++|+.|+.-+..++.. .|....+++|+.+-..+. +.+.++.+|+|+||.
T Consensus 295 p~~lvl~ptreLalqie~e~~kysy-ng~ksvc~ygggnR~eqi---------------------e~lkrgveiiiatPg 352 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSY-NGLKSVCVYGGGNRNEQI---------------------EDLKRGVEIIIATPG 352 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhh-cCcceEEEecCCCchhHH---------------------HHHhcCceEEeeCCc
Confidence 7899999999999998777777644 378888888887755554 446678899999999
Q ss_pred HHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCC
Q 012427 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (464)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
+|.++...+ .+++..+.++|+|||++|++.+|..+++.++-..+
T Consensus 353 rlndL~~~n-~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR----------------------------------- 396 (629)
T KOG0336|consen 353 RLNDLQMDN-VINLASITYLVLDEADRMLDMGFEPQIRKILLDIR----------------------------------- 396 (629)
T ss_pred hHhhhhhcC-eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC-----------------------------------
Confidence 999987764 47899999999999999999999999999987665
Q ss_pred CCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhh-CCCeEEEEec
Q 012427 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTS 340 (464)
Q Consensus 262 ~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lVf~~ 340 (464)
|..+.++.|||.++....+...++++|.++-.+.-....-..+.+......+.++...+..+++.. +..|+||||.
T Consensus 397 ---PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~ 473 (629)
T KOG0336|consen 397 ---PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVS 473 (629)
T ss_pred ---CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 444899999999999999999999999988877766666666777776667777887777777765 4569999999
Q ss_pred ChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhh
Q 012427 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (464)
Q Consensus 341 s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~ 420 (464)
+...|..+..-|.-.+ +....+||+-...+|+..++.|++|+++|||+|+.+++|+|+|+++||+.|++|.++..|+
T Consensus 474 ~K~~AD~LSSd~~l~g---i~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYV 550 (629)
T KOG0336|consen 474 RKVMADHLSSDFCLKG---ISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYV 550 (629)
T ss_pred chhhhhhccchhhhcc---cchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHH
Confidence 9888888877665444 8888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCccEEEEeeCcccccc
Q 012427 421 HRAGRTARAGQLGRCFTLLHKDEKKGA 447 (464)
Q Consensus 421 Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 447 (464)
||+||.||.|+.|..+.|+..++-.++
T Consensus 551 HRvGrtGRaGr~G~sis~lt~~D~~~a 577 (629)
T KOG0336|consen 551 HRVGRTGRAGRTGTSISFLTRNDWSMA 577 (629)
T ss_pred HHhcccccCCCCcceEEEEehhhHHHH
Confidence 999999999999999999988876554
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-47 Score=328.88 Aligned_cols=356 Identities=24% Similarity=0.341 Sum_probs=300.2
Q ss_pred cccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCcc
Q 012427 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR 103 (464)
Q Consensus 24 ~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~ 103 (464)
|...+|++|. |.|++.+.+..|+|+.|+.+|..+++-++.. -.+|.|.++..|+|||.+|.+.++.++... ...+.
T Consensus 87 yS~ksFeeL~-LkPellkgly~M~F~kPskIQe~aLPlll~~--Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-~~~PQ 162 (477)
T KOG0332|consen 87 YSAKSFEELR-LKPELLKGLYAMKFQKPSKIQETALPLLLAE--PPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-VVVPQ 162 (477)
T ss_pred cccccHHhhC-CCHHHHhHHHHhccCCcchHHHhhcchhhcC--CchhhhhhhcCCCchhHHHHHHHHHhcCcc-ccCCC
Confidence 3334455664 9999999999999999999999997766541 248999999999999999999999988765 35667
Q ss_pred EEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH
Q 012427 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183 (464)
Q Consensus 104 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l 183 (464)
++.|+|+++|+.|..+.+.+++++.++.......+.....-. .=..+|+|+||+.+
T Consensus 163 ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~------------------------~i~eqIviGTPGtv 218 (477)
T KOG0332|consen 163 CICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN------------------------KLTEQIVIGTPGTV 218 (477)
T ss_pred ceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC------------------------cchhheeeCCCccH
Confidence 899999999999999999999998877777766665321110 01138999999999
Q ss_pred HHhhhcCCCcCCCCccEEEEehhhHhhhH-hhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCC
Q 012427 184 MDHINATRGFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (464)
Q Consensus 184 ~~~l~~~~~~~~~~~~~iIvDE~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
.++..+.+...++.+.++|+|||+.+++. +|++.-..++..++.
T Consensus 219 ~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~----------------------------------- 263 (477)
T KOG0332|consen 219 LDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR----------------------------------- 263 (477)
T ss_pred HHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC-----------------------------------
Confidence 99998866678899999999999998764 577776666666552
Q ss_pred CCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecCh
Q 012427 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 342 (464)
Q Consensus 263 ~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~ 342 (464)
..|.+++|||.......+....+.++..+....++..+....+.|........|...+.++.....-+..+|||.++
T Consensus 264 ---~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk 340 (477)
T KOG0332|consen 264 ---NQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTK 340 (477)
T ss_pred ---cceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeeh
Confidence 33889999999999999999899988888777776666554444555555778999999988888888999999999
Q ss_pred hhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC------CCc
Q 012427 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYI 416 (464)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~------~s~ 416 (464)
..|..+++.+.+.| +.+..+||+|...+|..++++|+.|..++||+|+.+.+|+|++.++.||.|++| .+.
T Consensus 341 ~ta~~l~~~m~~~G---h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~ 417 (477)
T KOG0332|consen 341 ATAMWLYEEMRAEG---HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDY 417 (477)
T ss_pred hhHHHHHHHHHhcC---ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCH
Confidence 99999999999888 899999999999999999999999999999999999999999999999999998 457
Q ss_pred chhhhhhhhhhcCCCCccEEEEeeCcccccch
Q 012427 417 KTYIHRAGRTARAGQLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 417 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 448 (464)
..|+||+||+||.|+.|.++.++++.+....+
T Consensus 418 etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~m 449 (477)
T KOG0332|consen 418 ETYLHRIGRTGRFGKKGLAINLVDDKDSMNIM 449 (477)
T ss_pred HHHHHHhcccccccccceEEEeecccCcHHHH
Confidence 79999999999999999999999888776654
No 30
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-45 Score=333.00 Aligned_cols=357 Identities=28% Similarity=0.432 Sum_probs=314.6
Q ss_pred CCCccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 012427 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
+.|....+|+++ ++++.|..++.+..|..|+++|..+++..+ .+++++-.+.||+|||-+++++++..++
T Consensus 217 s~~rpvtsfeh~------gfDkqLm~airk~Ey~kptpiq~qalptal----sgrdvigIAktgSgktaAfi~pm~~him 286 (731)
T KOG0339|consen 217 SPPRPVTSFEHF------GFDKQLMTAIRKSEYEKPTPIQCQALPTAL----SGRDVIGIAKTGSGKTAAFIWPMIVHIM 286 (731)
T ss_pred CCCCCcchhhhc------CchHHHHHHHhhhhcccCCccccccccccc----ccccchheeeccCcchhHHHHHHHHHhc
Confidence 344455666665 589999999999999999999999855544 5999999999999999999999998886
Q ss_pred hhc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhc
Q 012427 96 NRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (464)
Q Consensus 96 ~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (464)
... ..++-.+|++||++|+.|+..+++++++..|+++.++||+.+.-++... +..
T Consensus 287 dq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~---------------------Lk~ 345 (731)
T KOG0339|consen 287 DQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKE---------------------LKE 345 (731)
T ss_pred chhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHh---------------------hhc
Confidence 542 3567899999999999999999999999999999999999887666443 557
Q ss_pred CCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhh
Q 012427 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (464)
Q Consensus 172 ~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (464)
++.|||+||++|.+.+... ..++.+.+++|+||+++|.+.+|..+++.|.+..+
T Consensus 346 g~EivVaTPgRlid~VkmK-atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir------------------------- 399 (731)
T KOG0339|consen 346 GAEIVVATPGRLIDMVKMK-ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR------------------------- 399 (731)
T ss_pred CCeEEEechHHHHHHHHhh-cccceeeeEEEEechhhhhccccHHHHHHHHhhcC-------------------------
Confidence 8999999999999988874 47889999999999999999999999999998876
Q ss_pred ccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh-h
Q 012427 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-L 330 (464)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~ 330 (464)
+..|.++||||+...+..+....+.+|+.+..+.-.....+..+...+......|+..+..-|.. .
T Consensus 400 -------------pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~ 466 (731)
T KOG0339|consen 400 -------------PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFS 466 (731)
T ss_pred -------------CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhc
Confidence 44499999999999999999999999998877765555556666677777777888887776655 4
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEe
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~ 410 (464)
..+++|+|+.-...+++++..|+-.+ +.+..+||+|...+|.+++..|+.+...||++|+...+|+|+|++..||.|
T Consensus 467 S~gkvlifVTKk~~~e~i~a~Lklk~---~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvny 543 (731)
T KOG0339|consen 467 SEGKVLIFVTKKADAEEIAANLKLKG---FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNY 543 (731)
T ss_pred cCCcEEEEEeccCCHHHHHHHhcccc---ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecc
Confidence 67899999999999999999998777 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012427 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 411 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
+...++..+.||+||.||.|.+|.+++++...+..
T Consensus 544 D~ardIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 544 DFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred cccchhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 99999999999999999999999999999888766
No 31
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=5.4e-47 Score=330.92 Aligned_cols=368 Identities=27% Similarity=0.449 Sum_probs=310.9
Q ss_pred hccCCCCcc-CCCCCccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhH
Q 012427 5 KKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83 (464)
Q Consensus 5 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT 83 (464)
.||..-.+. ....|+...+|..+. +|.-+++.+++-|+.+|+|+|.+-++-++. |++.|-.+-||||||
T Consensus 152 vRk~~~I~veGd~ipPPIksF~eMK------FP~~~L~~lk~KGI~~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKT 221 (610)
T KOG0341|consen 152 VRKQLHILVEGDDIPPPIKSFKEMK------FPKPLLRGLKKKGIVHPTPIQVQGLPVVLS----GRDMIGIAFTGSGKT 221 (610)
T ss_pred HHHhheEEeeCCCCCCchhhhhhcc------CCHHHHHHHHhcCCCCCCceeecCcceEee----cCceeeEEeecCCce
Confidence 445544444 566777888888886 899999999999999999999998666654 999999999999999
Q ss_pred HHhHHHHHHHHHhhc-------cCCccEEEEcccHHHHHHHHHHHHHhcccc------CceEEEeecCCchhHHHHHhhc
Q 012427 84 LSYALPIVQTLSNRA-------VRCLRALVVLPTRDLALQVKDVFAAIAPAV------GLSVGLAVGQSSIADEISELIK 150 (464)
Q Consensus 84 ~~~~~~~l~~~~~~~-------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~v~~~~g~~~~~~~~~~~~~ 150 (464)
++|.+|++-+.+... ..++-.||+||+++|+.|..+-+..++..+ .++..+..|+.+...+..
T Consensus 222 lvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~---- 297 (610)
T KOG0341|consen 222 LVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLD---- 297 (610)
T ss_pred EEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHH----
Confidence 999999776665431 356789999999999999999888876554 256666777777665543
Q ss_pred cccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhcccccc
Q 012427 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~ 230 (464)
.+..+.+|+|+||++|.+.+.+.. ++++-.+++.+|||+++++.+|.+.++.++..+...+
T Consensus 298 -----------------~v~~GvHivVATPGRL~DmL~KK~-~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QR- 358 (610)
T KOG0341|consen 298 -----------------VVRRGVHIVVATPGRLMDMLAKKI-MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQR- 358 (610)
T ss_pred -----------------HHhcCeeEEEcCcchHHHHHHHhh-ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhh-
Confidence 356778999999999999998744 7788889999999999999999999999998876544
Q ss_pred ccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccc
Q 012427 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310 (464)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (464)
|.++||||++..+..+....+.+|+.++.+.-....-..++.
T Consensus 359 -------------------------------------QTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQe- 400 (610)
T KOG0341|consen 359 -------------------------------------QTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQE- 400 (610)
T ss_pred -------------------------------------heeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHH-
Confidence 889999999999999999999999999887755443333322
Q ss_pred eeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEE
Q 012427 311 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (464)
Q Consensus 311 ~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi 390 (464)
..++....|...+.+.+++. ..++||||....+...+.+||--.| ..++.+||+...++|...++.|+.|+.++||
T Consensus 401 vEyVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKG---VEavaIHGGKDQedR~~ai~afr~gkKDVLV 476 (610)
T KOG0341|consen 401 VEYVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKG---VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLV 476 (610)
T ss_pred HHHHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHcc---ceeEEeecCcchhHHHHHHHHHhcCCCceEE
Confidence 22345667888888888876 5689999999999999999998777 8899999999999999999999999999999
Q ss_pred EcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccccc
Q 012427 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKGA 447 (464)
Q Consensus 391 ~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 447 (464)
+|+.++.|+|+|++.|||.|+.|..+..|+||+||.||.|+.|.+.+|++++.....
T Consensus 477 ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esv 533 (610)
T KOG0341|consen 477 ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESV 533 (610)
T ss_pred EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHH
Confidence 999999999999999999999999999999999999999999999999987755443
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.2e-45 Score=353.33 Aligned_cols=326 Identities=23% Similarity=0.348 Sum_probs=241.6
Q ss_pred HHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 012427 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 44 ~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
+.+||..|+++|.++++.++. ++++++.+|||+|||++|++|++.. +..+||++|+++|+.|+.+.+..
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~~-------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALCS-------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHHc-------CCcEEEEecHHHHHHHHHHHHHH
Confidence 348999999999999888876 8999999999999999999998741 33799999999999999888876
Q ss_pred hccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-hcCCcEEEeCchHHHHhhhcCCCc-CCCCccEE
Q 012427 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGF-TLEHLCYL 201 (464)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiI~T~~~l~~~l~~~~~~-~~~~~~~i 201 (464)
. ++++..+.++....... .++..+ ....+|+++||+.+.........+ ...+++++
T Consensus 74 ~----gi~~~~l~~~~~~~~~~------------------~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~i 131 (470)
T TIGR00614 74 S----GIPATFLNSSQSKEQQK------------------NVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLI 131 (470)
T ss_pred c----CCcEEEEeCCCCHHHHH------------------HHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEE
Confidence 4 78888887776544331 111222 234799999999875422111112 35678999
Q ss_pred EEehhhHhhhHh--hhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecC
Q 012427 202 VVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (464)
Q Consensus 202 IvDE~H~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 279 (464)
|+||||++.+++ |......+...... .+..+.+++|||+.+.
T Consensus 132 ViDEaH~i~~~g~~fr~~~~~l~~l~~~------------------------------------~~~~~~l~lTAT~~~~ 175 (470)
T TIGR00614 132 AVDEAHCISQWGHDFRPDYKALGSLKQK------------------------------------FPNVPIMALTATASPS 175 (470)
T ss_pred EEeCCcccCccccccHHHHHHHHHHHHH------------------------------------cCCCceEEEecCCCHH
Confidence 999999987654 33333332211110 0334789999998765
Q ss_pred ccchh--cccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHH-hhCCCeEEEEecChhhHHHHHHHHhhcC
Q 012427 280 PNKLA--QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFG 356 (464)
Q Consensus 280 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~lVf~~s~~~~~~l~~~l~~~~ 356 (464)
..... ...+..+..+......... .+............+...+. ...+.++||||+++++++.+++.|++.+
T Consensus 176 ~~~di~~~l~l~~~~~~~~s~~r~nl-----~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g 250 (470)
T TIGR00614 176 VREDILRQLNLKNPQIFCTSFDRPNL-----YYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG 250 (470)
T ss_pred HHHHHHHHcCCCCCcEEeCCCCCCCc-----EEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC
Confidence 43322 2334445444332221111 11111122233444555555 4456677999999999999999999876
Q ss_pred ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEE
Q 012427 357 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436 (464)
Q Consensus 357 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 436 (464)
+.+..+||+|+..+|..+++.|.+|+.+|||||+++++|+|+|++++||+++.|.|+..|+|++||+||.|+.|.|+
T Consensus 251 ---~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~ 327 (470)
T TIGR00614 251 ---IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECH 327 (470)
T ss_pred ---CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCccccc
Q 012427 437 TLLHKDEKKG 446 (464)
Q Consensus 437 ~~~~~~~~~~ 446 (464)
+|++..+...
T Consensus 328 ~~~~~~d~~~ 337 (470)
T TIGR00614 328 LFYAPADINR 337 (470)
T ss_pred EEechhHHHH
Confidence 9998876553
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=9.5e-44 Score=357.19 Aligned_cols=332 Identities=20% Similarity=0.275 Sum_probs=246.2
Q ss_pred CCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 35 l~~~i~~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
....+...++. |||..||+.|.+++..++. |+++++.+|||+|||++|++|++.. ...+|||+|+++|
T Consensus 444 w~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSL 512 (1195)
T PLN03137 444 WTKKLEVNNKKVFGNHSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSL 512 (1195)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHH
Confidence 56667777766 8999999999999888775 9999999999999999999999852 2379999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh---cCCcEEEeCchHHHH---hh
Q 012427 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ---SAVDILVATPGRLMD---HI 187 (464)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~IiI~T~~~l~~---~l 187 (464)
+.++...+... ++++..+.++.....+...+ ..+. ..++|+++||+++.. ++
T Consensus 513 mqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~il------------------r~l~s~~g~~~ILyvTPERL~~~d~ll 570 (1195)
T PLN03137 513 IQDQIMNLLQA----NIPAASLSAGMEWAEQLEIL------------------QELSSEYSKYKLLYVTPEKVAKSDSLL 570 (1195)
T ss_pred HHHHHHHHHhC----CCeEEEEECCCCHHHHHHHH------------------HHHHhcCCCCCEEEEChHHhhcchHHH
Confidence 98766666553 78899999988766553222 2221 457999999999853 22
Q ss_pred hcCCCc-CCCCccEEEEehhhHhhhHh--hhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCC
Q 012427 188 NATRGF-TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (464)
Q Consensus 188 ~~~~~~-~~~~~~~iIvDE~H~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
.....+ ....+.+|||||||++..++ |.+....+-.+... .
T Consensus 571 ~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~------------------------------------f 614 (1195)
T PLN03137 571 RHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK------------------------------------F 614 (1195)
T ss_pred HHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh------------------------------------C
Confidence 221111 13458899999999998765 44433332111100 1
Q ss_pred CceeeEEeeeeeecCccchhc--ccccCCeeeecCCccccCccccccceeeccCC-chHHHHHHHHHh-hCCCeEEEEec
Q 012427 265 PRLVKMVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESK-LKPLYLVALLQS-LGEEKCIVFTS 340 (464)
Q Consensus 265 ~~~~~i~~sat~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~-~~~~~~lVf~~ 340 (464)
+..+.+++|||.......... ..+..+..+........ ..+...+.. .....+..++.. ..+.++||||.
T Consensus 615 p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpN------L~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 615 PNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPN------LWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccc------eEEEEeccchhHHHHHHHHHHhcccCCCceeEeC
Confidence 233678899998776555332 23334433332221111 111122222 123345555543 34568999999
Q ss_pred ChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhh
Q 012427 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (464)
Q Consensus 341 s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~ 420 (464)
++..++.++..|+..+ +.+..+||+|+.++|..+++.|..|+.+|||||.++++|||+|++++||+++.|.|+..|+
T Consensus 689 SRke~E~LAe~L~~~G---ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYy 765 (1195)
T PLN03137 689 SRMDCEKVAERLQEFG---HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYH 765 (1195)
T ss_pred chhHHHHHHHHHHHCC---CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHH
Confidence 9999999999999877 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCccEEEEeeCccc
Q 012427 421 HRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 421 Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
|++||+||.|+.|.|++|++..+.
T Consensus 766 QriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 766 QECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred hhhcccCCCCCCceEEEEecHHHH
Confidence 999999999999999999976654
No 34
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.7e-43 Score=351.67 Aligned_cols=330 Identities=23% Similarity=0.320 Sum_probs=247.5
Q ss_pred CCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 35 l~~~i~~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
+++.....+++ +||..|+++|.++++.+++ ++++++.+|||+|||++|+++++.. ...+||++|+++|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~sL 77 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLISL 77 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHHH
Confidence 45555666665 7999999999999888876 8999999999999999999998842 2379999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-hcCCcEEEeCchHHHH--hhhcC
Q 012427 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMD--HINAT 190 (464)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiI~T~~~l~~--~l~~~ 190 (464)
+.|+.+.++.. |+.+..+.+.......... ...+ ....+++++||+++.. ++..
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~------------------~~~~~~g~~~il~~tPe~l~~~~~~~~- 134 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNSTQTREQQLEV------------------MAGCRTGQIKLLYIAPERLMMDNFLEH- 134 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcCCCCHHHHHHH------------------HHHHhCCCCcEEEEChHHhcChHHHHH-
Confidence 99999988875 6777777776654433211 1112 2346899999999863 2222
Q ss_pred CCcCCCCccEEEEehhhHhhhHh--hhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCcee
Q 012427 191 RGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (464)
Q Consensus 191 ~~~~~~~~~~iIvDE~H~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
+...++++||+||||++..++ |......+...... .+..+
T Consensus 135 --l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~------------------------------------~p~~~ 176 (607)
T PRK11057 135 --LAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR------------------------------------FPTLP 176 (607)
T ss_pred --HhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh------------------------------------CCCCc
Confidence 234468999999999987644 33322222111100 12347
Q ss_pred eEEeeeeeecCccchh--cccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHH
Q 012427 269 KMVLSATLTQDPNKLA--QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (464)
.+++|||++....... ...+.++............ .+.......+...+...+....++++||||+++++++
T Consensus 177 ~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl------~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e 250 (607)
T PRK11057 177 FMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI------RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVE 250 (607)
T ss_pred EEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcc------eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 8999999876544322 2234445443322211111 1112223344555666677777889999999999999
Q ss_pred HHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhh
Q 012427 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (464)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~ 426 (464)
.+++.|++.+ +.+..+|++|+..+|..+++.|..|+.+|||||+++++|+|+|++++||+++.|.|...|+|++||+
T Consensus 251 ~la~~L~~~g---~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRa 327 (607)
T PRK11057 251 DTAARLQSRG---ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA 327 (607)
T ss_pred HHHHHHHhCC---CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhc
Confidence 9999999876 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeeCcccc
Q 012427 427 ARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 427 ~R~g~~g~~~~~~~~~~~~ 445 (464)
||.|..|.|++|++..+..
T Consensus 328 GR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 328 GRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred cCCCCCceEEEEeCHHHHH
Confidence 9999999999999887643
No 35
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-44 Score=314.68 Aligned_cols=363 Identities=25% Similarity=0.417 Sum_probs=315.8
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCC
Q 012427 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (464)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~ 101 (464)
.+|+++ +|++.+++.+..+||..|+.+|++|+..++ .|.++.+.+.+|+|||.++.+++++.+.... +.
T Consensus 26 dsfddm------~L~e~LLrgiy~yGFekPSaIQqraI~p~i----~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~-ke 94 (397)
T KOG0327|consen 26 DSFDDM------NLKESLLRGIYAYGFEKPSAIQQRAILPCI----KGHDVIAQAQSGTGKTAAFLISILQQIDMSV-KE 94 (397)
T ss_pred hhhhhc------CCCHHHHhHHHhhccCCchHHHhccccccc----cCCceeEeeeccccchhhhHHHHHhhcCcch-HH
Confidence 456665 399999999999999999999999965555 4999999999999999999999998875442 33
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCch
Q 012427 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (464)
Q Consensus 102 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~ 181 (464)
..+|+++|+++|+.|..+....++...+.++....|+.........+ ....++|+++||+
T Consensus 95 ~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i--------------------~~~~~hivvGTpg 154 (397)
T KOG0327|consen 95 TQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQAL--------------------LKDKPHIVVGTPG 154 (397)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhh--------------------hccCceeecCCch
Confidence 46999999999999999999999988899999888887765432222 2244799999999
Q ss_pred HHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCC
Q 012427 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (464)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
.+.+.+... .+....+.+.|+||++.++..++.+.+..++..++.
T Consensus 155 rV~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~---------------------------------- 199 (397)
T KOG0327|consen 155 RVFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS---------------------------------- 199 (397)
T ss_pred hHHHhhccc-cccccceeEEeecchHhhhccchHHHHHHHHHHcCc----------------------------------
Confidence 999999876 477788999999999999999999999999998874
Q ss_pred CCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecC
Q 012427 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341 (464)
Q Consensus 262 ~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s 341 (464)
..|.+++|||.+.........++.+|..+........ .+.+.+++.......|...+..+.+ .....++||++
T Consensus 200 ----~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt 272 (397)
T KOG0327|consen 200 ----DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNT 272 (397)
T ss_pred ----chhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHHHHH--hhhcceEEecc
Confidence 3489999999999999999999999998887776644 5667777777777779888888888 56788999999
Q ss_pred hhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhh
Q 012427 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421 (464)
Q Consensus 342 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q 421 (464)
.+.+..+...|..++ ..+..+|++|...+|..+++.|+.|..++||+|+.+++|+|+..++.||+|+.|.....|++
T Consensus 273 ~r~v~~l~~~L~~~~---~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yih 349 (397)
T KOG0327|consen 273 RRKVDNLTDKLRAHG---FTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIH 349 (397)
T ss_pred hhhHHHHHHHHhhCC---ceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhh
Confidence 999999999997766 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCccEEEEeeCcccccchhhcccccccccc
Q 012427 422 RAGRTARAGQLGRCFTLLHKDEKKGAIGRSLFHQSRVLG 460 (464)
Q Consensus 422 ~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (464)
|+||+||.|++|.++.++...+....-+-+-+...+++.
T Consensus 350 R~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e 388 (397)
T KOG0327|consen 350 RIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEE 388 (397)
T ss_pred hcccccccCCCceeeeeehHhhHHHHHhHHHhcCCccee
Confidence 999999999999999999998888776666555555554
No 36
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-44 Score=349.33 Aligned_cols=358 Identities=30% Similarity=0.485 Sum_probs=310.6
Q ss_pred CCCCCccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHH
Q 012427 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (464)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~ 93 (464)
-..+|....+|.++ ++...++..++++||..++++|..||++|.. |+++|.++-||+|||++|++|++..
T Consensus 357 g~~~pkpv~sW~q~------gl~~~il~tlkkl~y~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirh 426 (997)
T KOG0334|consen 357 GKECPKPVTSWTQC------GLSSKILETLKKLGYEKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRH 426 (997)
T ss_pred cCCCCcccchHhhC------CchHHHHHHHHHhcCCCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhh
Confidence 45677788888888 4999999999999999999999999777765 9999999999999999999999977
Q ss_pred HHhhc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh
Q 012427 94 LSNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (464)
Q Consensus 94 ~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (464)
+.... ..++.++|++||++|+.|+.+++++++..+++.+++++|+......+.. +
T Consensus 427 i~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiae---------------------l 485 (997)
T KOG0334|consen 427 IKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAE---------------------L 485 (997)
T ss_pred hhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHH---------------------H
Confidence 75432 3578999999999999999999999999999999999999987776544 5
Q ss_pred hcCCcEEEeCchHHHHhhhc--CCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccc
Q 012427 170 QSAVDILVATPGRLMDHINA--TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247 (464)
Q Consensus 170 ~~~~~IiI~T~~~l~~~l~~--~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (464)
.+++.|+|+||++..+.+-. +...++....++|+|||+++.+.+|.+.+..|+..++.
T Consensus 486 kRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrp-------------------- 545 (997)
T KOG0334|consen 486 KRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRP-------------------- 545 (997)
T ss_pred hcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcch--------------------
Confidence 56789999999999987644 33345666779999999999999999999888887753
Q ss_pred hhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeecc-CCchHHHHHHH
Q 012427 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVAL 326 (464)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 326 (464)
-.|.+++|||++..+..+....++.|+.+...... .....+......+. ...|+..|.++
T Consensus 546 ------------------drQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eL 606 (997)
T KOG0334|consen 546 ------------------DRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLEL 606 (997)
T ss_pred ------------------hhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHH
Confidence 33889999999999888888888888887766443 44445555555555 88899999998
Q ss_pred HHhh-CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCC
Q 012427 327 LQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405 (464)
Q Consensus 327 l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~ 405 (464)
+... ..+++||||.+.+.|..+.+.|.+.+ +.+..+||+.+..+|...++.|+++.+++||+|+.+++|+|++++.
T Consensus 607 l~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag---~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~ 683 (997)
T KOG0334|consen 607 LGERYEDGKTIIFVDKQEKADALLRDLQKAG---YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELI 683 (997)
T ss_pred HHHHhhcCCEEEEEcCchHHHHHHHHHHhcC---cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccce
Confidence 8764 46799999999999999999999777 8888899999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012427 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 406 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
.||+|+.|....+|+||.||+||.|+.|.+++|+..++.
T Consensus 684 Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~ 722 (997)
T KOG0334|consen 684 LVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQL 722 (997)
T ss_pred EEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHh
Confidence 999999999999999999999999999999999988433
No 37
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.1e-43 Score=359.23 Aligned_cols=342 Identities=24% Similarity=0.317 Sum_probs=249.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
|++++ ||+.+.+.+++.||.+|+++|.+++...+ ..++|+++++|||+|||+++.++++..+.. +.+++|++
T Consensus 3 ~~~l~-lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~---~~g~nvlv~APTGSGKTlia~lail~~l~~----~~kal~i~ 74 (737)
T PRK02362 3 IAELP-LPEGVIEFYEAEGIEELYPPQAEAVEAGL---LDGKNLLAAIPTASGKTLIAELAMLKAIAR----GGKALYIV 74 (737)
T ss_pred hhhcC-CCHHHHHHHHhCCCCcCCHHHHHHHHHHH---hCCCcEEEECCCcchHHHHHHHHHHHHHhc----CCcEEEEe
Confidence 45554 99999999999999999999999987633 258999999999999999999999988863 34899999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhh
Q 012427 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~ 188 (464)
|+++|+.|.++.++.+.. .|+++..++|+...... ....++|+|+||+++..++.
T Consensus 75 P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~------------------------~l~~~~IiV~Tpek~~~llr 129 (737)
T PRK02362 75 PLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE------------------------WLGDNDIIVATSEKVDSLLR 129 (737)
T ss_pred ChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc------------------------ccCCCCEEEECHHHHHHHHh
Confidence 999999999999998654 48899999987653221 12346999999999988877
Q ss_pred cCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCcee
Q 012427 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (464)
Q Consensus 189 ~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
+.. ..+++++++|+||+|.+.+.+++..++.++..+.... +..|
T Consensus 130 ~~~-~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~-----------------------------------~~~q 173 (737)
T PRK02362 130 NGA-PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN-----------------------------------PDLQ 173 (737)
T ss_pred cCh-hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC-----------------------------------CCCc
Confidence 543 4578899999999999988788888777766543211 2348
Q ss_pred eEEeeeeeecCccchhccccc------CCeeeecC---CccccCccccccceeeccC-CchHHHHHHHHHhhCCCeEEEE
Q 012427 269 KMVLSATLTQDPNKLAQLDLH------HPLFLTTG---ETRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVF 338 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~lVf 338 (464)
++++|||+++...-..+.... .|+..... ........ ......... ......+.+.+ ..++++|||
T Consensus 174 ii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF 249 (737)
T PRK02362 174 VVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQREVEVPSKDDTLNLVLDTL--EEGGQCLVF 249 (737)
T ss_pred EEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc--ccccCCCccchHHHHHHHHHH--HcCCCeEEE
Confidence 999999986432222111110 11100000 00000000 000000011 11112222222 256799999
Q ss_pred ecChhhHHHHHHHHhhcCc---------------------------------cceeEeeccCcccHHHHHHHHHHHhcCC
Q 012427 339 TSSVESTHRLCTLLNHFGE---------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGK 385 (464)
Q Consensus 339 ~~s~~~~~~l~~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 385 (464)
|+++..|+.+++.|..... ....+..+|++|+..+|..+++.|++|.
T Consensus 250 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~ 329 (737)
T PRK02362 250 VSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRL 329 (737)
T ss_pred EeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCC
Confidence 9999999999888865311 0136788999999999999999999999
Q ss_pred eeEEEEcccccccCCCCCCCeEEE----ec-----CCCCcchhhhhhhhhhcCCCC--ccEEEEeeCcc
Q 012427 386 IQVLVSSDAMTRGMDVEGVNNVVN----YD-----KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDE 443 (464)
Q Consensus 386 ~~iLi~t~~~~~Gidip~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~ 443 (464)
.++||||+++++|+|+|..++||. |+ .|.+..+|.||+|||||.|.+ |.+++++...+
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 999999999999999999888875 44 477889999999999999866 88888886643
No 38
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.1e-44 Score=330.82 Aligned_cols=357 Identities=25% Similarity=0.411 Sum_probs=306.7
Q ss_pred CccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhh
Q 012427 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (464)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~ 97 (464)
..|+.+-..-.|+.|. |-..++..|+..+|..|+++|..|++.++. +.++|+++..|+|||++|...+++.+...
T Consensus 16 s~DV~~~~~~~fe~l~-l~r~vl~glrrn~f~~ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~ 90 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLA-LWREVLLGLRRNAFALPTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSR 90 (980)
T ss_pred ccccccCCCCCHHHHH-HHHHHHHHHHhhcccCCCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcc
Confidence 3444444444455554 788899999999999999999999777765 89999999999999999999999888765
Q ss_pred ccCCccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEE
Q 012427 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (464)
Q Consensus 98 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 176 (464)
. .....+||+||++++.|+.+.+..++..+ |.+|..+.|+++.......+ +.++|+
T Consensus 91 ~-~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl----------------------k~~rIv 147 (980)
T KOG4284|consen 91 S-SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL----------------------KQTRIV 147 (980)
T ss_pred c-CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh----------------------hhceEE
Confidence 3 45579999999999999999999999865 89999999999876553332 446899
Q ss_pred EeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhh-HhhhhhHHHHHHhccccccccccccccccccccccchhhhcccc
Q 012427 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (464)
Q Consensus 177 I~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
|+||+++..++... .++++.++++|+|||+.+.+ .+|.+.+.-|+..++..+
T Consensus 148 IGtPGRi~qL~el~-~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r-------------------------- 200 (980)
T KOG4284|consen 148 IGTPGRIAQLVELG-AMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR-------------------------- 200 (980)
T ss_pred ecCchHHHHHHHhc-CCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh--------------------------
Confidence 99999999998874 48999999999999999988 788999999988776443
Q ss_pred ccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCC-------chHHHHHHHHH
Q 012427 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-------LKPLYLVALLQ 328 (464)
Q Consensus 256 ~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~ 328 (464)
|.+.+|||.+.+.......++.+|.++........+...-+.+...+... .|+..|-.++.
T Consensus 201 ------------Qv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~ 268 (980)
T KOG4284|consen 201 ------------QVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFK 268 (980)
T ss_pred ------------eeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999998888777666654444444444432 36667777777
Q ss_pred hhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEE
Q 012427 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (464)
Q Consensus 329 ~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi 408 (464)
..+....||||+....|+.++.+|...| +.+..+.|.|+..+|..+++.++...++|||+|+..++|||-+.++.||
T Consensus 269 ~ipy~QAlVF~~~~sra~~~a~~L~ssG---~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVV 345 (980)
T KOG4284|consen 269 SIPYVQALVFCDQISRAEPIATHLKSSG---LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVV 345 (980)
T ss_pred hCchHHHHhhhhhhhhhhHHHHHhhccC---CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEE
Confidence 7788899999999999999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012427 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 409 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
..+.|-+...|.||+|||||.|-.|.+++|+++...
T Consensus 346 NiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 346 NIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred ecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999987766
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.7e-42 Score=345.91 Aligned_cols=325 Identities=21% Similarity=0.320 Sum_probs=245.0
Q ss_pred HHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHH
Q 012427 41 VALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (464)
Q Consensus 41 ~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~ 119 (464)
..+++ |||.+|+++|.++++.++. |+++++.+|||+|||++|+++++. ....++|++|+++|+.|+.+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal~-------~~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPALL-------LKGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHHH-------cCCcEEEEcCCHHHHHHHHH
Confidence 34554 8999999999999888876 899999999999999999998873 12368999999999999999
Q ss_pred HHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-hcCCcEEEeCchHHHHhhhcCCCcCCCCc
Q 012427 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHL 198 (464)
Q Consensus 120 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiI~T~~~l~~~l~~~~~~~~~~~ 198 (464)
.++.+ |+++..+.++.+..... .++..+ ....+|+++||+++....... .+...++
T Consensus 72 ~l~~~----gi~~~~~~s~~~~~~~~------------------~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l 128 (591)
T TIGR01389 72 QLRAA----GVAAAYLNSTLSAKEQQ------------------DIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPI 128 (591)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHH------------------HHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCC
Confidence 88875 78888888877655432 112222 345799999999985422211 1335678
Q ss_pred cEEEEehhhHhhhHh--hhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeee
Q 012427 199 CYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (464)
Q Consensus 199 ~~iIvDE~H~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~ 276 (464)
++||+||||++..++ |.+....+...... .+..+.+++|||.
T Consensus 129 ~~iViDEaH~i~~~g~~frp~y~~l~~l~~~------------------------------------~~~~~vi~lTAT~ 172 (591)
T TIGR01389 129 ALVAVDEAHCVSQWGHDFRPEYQRLGSLAER------------------------------------FPQVPRIALTATA 172 (591)
T ss_pred CEEEEeCCcccccccCccHHHHHHHHHHHHh------------------------------------CCCCCEEEEEeCC
Confidence 999999999987543 33333333222111 0222578999998
Q ss_pred ecCccchhcc--cccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhh
Q 012427 277 TQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (464)
Q Consensus 277 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~ 354 (464)
+......... .+.++..+..... .....+.......+...+.+.+....+.++||||+++..++.+++.|..
T Consensus 173 ~~~~~~~i~~~l~~~~~~~~~~~~~------r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~ 246 (591)
T TIGR01389 173 DAETRQDIRELLRLADANEFITSFD------RPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLES 246 (591)
T ss_pred CHHHHHHHHHHcCCCCCCeEecCCC------CCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHh
Confidence 7665443322 2333333321111 1111222223445566777777777778999999999999999999987
Q ss_pred cCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCcc
Q 012427 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (464)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~ 434 (464)
.+ +.+..+|++|+..+|..+++.|..|+.+|||||+++++|+|+|++++||+++.|.|...|+|++||+||.|+.+.
T Consensus 247 ~g---~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~ 323 (591)
T TIGR01389 247 QG---ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAE 323 (591)
T ss_pred CC---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCce
Confidence 76 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCccc
Q 012427 435 CFTLLHKDEK 444 (464)
Q Consensus 435 ~~~~~~~~~~ 444 (464)
|+++++..+.
T Consensus 324 ~il~~~~~d~ 333 (591)
T TIGR01389 324 AILLYSPADI 333 (591)
T ss_pred EEEecCHHHH
Confidence 9998877654
No 40
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-43 Score=321.80 Aligned_cols=375 Identities=29% Similarity=0.373 Sum_probs=304.5
Q ss_pred ccCCCCccCCCC-CccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHH
Q 012427 6 KKSMPVLPWMRS-PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84 (464)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~ 84 (464)
|++-+.-.|... |....+|.++.-+-. .++.+++.+.+.+|..|++.|.++++.++. +.++++++|||+|||+
T Consensus 115 Rk~~k~~v~G~~~~~~l~~f~~lt~~~~--~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtl 188 (593)
T KOG0344|consen 115 RKSNKINVDGFHLPPPLLSFSDLTYDYS--MNKRLLENLQELGFDEPTPIQKQAIPVFLE----KRDVLACAPTGSGKTL 188 (593)
T ss_pred hhcceeeccCCCCCCccccccccchhhh--hcHHHHHhHhhCCCCCCCcccchhhhhhhc----ccceEEeccCCCcchh
Confidence 344444444444 667777776554443 789999999999999999999999777765 8999999999999999
Q ss_pred HhHHHHHHHHHhhc----cCCccEEEEcccHHHHHHHHHHHHHhc--cccCceEEEeecCCchhHHHHHhhccccccccc
Q 012427 85 SYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVKDVFAAIA--PAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158 (464)
Q Consensus 85 ~~~~~~l~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~--~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~ 158 (464)
+|.+|++..+.... ..+.+++|+.|+++|+.|++.++.++. ...+.++...............
T Consensus 189 af~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~----------- 257 (593)
T KOG0344|consen 189 AFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAF----------- 257 (593)
T ss_pred hhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccch-----------
Confidence 99999999998765 567789999999999999999999998 4444444444333221111100
Q ss_pred cCCchhHHHhhhcCCcEEEeCchHHHHhhhcCC-CcCCCCccEEEEehhhHhhhH-hhhhhHHHHHHhcccccccccccc
Q 012427 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDA 236 (464)
Q Consensus 159 ~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~-~~~~~~~~~iIvDE~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 236 (464)
.....++++|+||.++..++.... ...++++..+|+||++.+.+. .|..++..++..+.+
T Consensus 258 ---------~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s--------- 319 (593)
T KOG0344|consen 258 ---------LSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS--------- 319 (593)
T ss_pred ---------hHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC---------
Confidence 011235899999999888877642 256889999999999999998 888888888887765
Q ss_pred ccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccC
Q 012427 237 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 316 (464)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (464)
+....-+||||.+....++......+...+..+.........-+........
T Consensus 320 ----------------------------~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse 371 (593)
T KOG0344|consen 320 ----------------------------PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSE 371 (593)
T ss_pred ----------------------------cchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecc
Confidence 3335667899999999999988888888777777655543333445555667
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccccc
Q 012427 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (464)
Q Consensus 317 ~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~ 396 (464)
..|..++..++...-..++|||+.+.+.|..+...|.. ..++.+..+||+.+..+|++.+++|+.|+..+||||+.++
T Consensus 372 ~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~--~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~ 449 (593)
T KOG0344|consen 372 KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI--YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLA 449 (593)
T ss_pred hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh--ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhh
Confidence 78999999999888888999999999999999999953 3348899999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012427 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 397 ~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
+|+|+.++++||+||.|.+..+|+||+||.||.|+.|.+++||.+++..
T Consensus 450 RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~ 498 (593)
T KOG0344|consen 450 RGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMP 498 (593)
T ss_pred ccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccch
Confidence 9999999999999999999999999999999999999999999886543
No 41
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-42 Score=304.02 Aligned_cols=360 Identities=30% Similarity=0.441 Sum_probs=318.5
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCC
Q 012427 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (464)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~ 101 (464)
..|+.+ +|+..+.+++.+-||+.|+|+|++.++.+++ ++++...+-||+|||.++++++++.+......+
T Consensus 21 g~fqsm------gL~~~v~raI~kkg~~~ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g 90 (529)
T KOG0337|consen 21 GGFQSM------GLDYKVLRAIHKKGFNTPTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTG 90 (529)
T ss_pred CCcccc------CCCHHHHHHHHHhhcCCCCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccc
Confidence 456555 6999999999999999999999999666655 999999999999999999999999998876667
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCch
Q 012427 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (464)
Q Consensus 102 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~ 181 (464)
.++++++||++|+.|..+..+.++...+.++.+++|++...++ +..+..+++||++||+
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeq---------------------f~~l~~npDii~ATpg 149 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQ---------------------FILLNENPDIIIATPG 149 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHH---------------------HHHhccCCCEEEecCc
Confidence 7999999999999999999999999999999999999887655 3445678899999999
Q ss_pred HHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCC
Q 012427 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (464)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
++..+.-.-. +.++.+.+||+||++++...+|.+.+.+++..++...
T Consensus 150 r~~h~~vem~-l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~-------------------------------- 196 (529)
T KOG0337|consen 150 RLLHLGVEMT-LTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESR-------------------------------- 196 (529)
T ss_pred eeeeeehhee-ccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcc--------------------------------
Confidence 9977655433 6688999999999999999999999999998887544
Q ss_pred CCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhC-CCeEEEEec
Q 012427 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG-EEKCIVFTS 340 (464)
Q Consensus 262 ~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~lVf~~ 340 (464)
|.++||||++...-.+...++.+|..+.... +..+.+..+..+..+....|..+|..++.... ...++||+.
T Consensus 197 ------QTllfSatlp~~lv~fakaGl~~p~lVRldv-etkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~ 269 (529)
T KOG0337|consen 197 ------QTLLFSATLPRDLVDFAKAGLVPPVLVRLDV-ETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVA 269 (529)
T ss_pred ------eEEEEeccCchhhHHHHHccCCCCceEEeeh-hhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEec
Confidence 8999999999998899999999998887443 44667778888888899999999999888764 357999999
Q ss_pred ChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhh
Q 012427 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (464)
Q Consensus 341 s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~ 420 (464)
+..+++.+...|+..+ +.+..+.|.|+.+-|..-+..|+.++..+||.|+.+.+|+|+|..+.||.|+.|.+...|.
T Consensus 270 tk~hve~~~~ll~~~g---~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFv 346 (529)
T KOG0337|consen 270 TKHHVEYVRGLLRDFG---GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFV 346 (529)
T ss_pred ccchHHHHHHHHHhcC---CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEE
Confidence 9999999999999887 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCccEEEEeeCcccccchhhccccc
Q 012427 421 HRAGRTARAGQLGRCFTLLHKDEKKGAIGRSLFHQ 455 (464)
Q Consensus 421 Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (464)
||+||+.|.|+.|.++.++..++...+.+=.++..
T Consensus 347 hRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflg 381 (529)
T KOG0337|consen 347 HRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLG 381 (529)
T ss_pred EEecchhhccccceEEEEEecccchhhhhhhhhcC
Confidence 99999999999999999999998887765444333
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.2e-41 Score=347.25 Aligned_cols=347 Identities=20% Similarity=0.223 Sum_probs=242.6
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc-----cCCccEEEEc
Q 012427 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVL 108 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~-----~~~~~~lil~ 108 (464)
.|++.+.+.+++ +|..|+++|.++++.+.+ |+|+++++|||+|||+++++++++.+.... ..+.++||++
T Consensus 17 ~l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIs 91 (876)
T PRK13767 17 LLRPYVREWFKE-KFGTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVS 91 (876)
T ss_pred hcCHHHHHHHHH-ccCCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEc
Confidence 378999998887 788999999999988765 899999999999999999999998887532 2345799999
Q ss_pred ccHHHHHHHHHHHHH-------hc----ccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEE
Q 012427 109 PTRDLALQVKDVFAA-------IA----PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (464)
Q Consensus 109 P~~~L~~q~~~~~~~-------~~----~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 176 (464)
|+++|+.|+.+.+.. ++ ... ++++...+|+.+...+... +.+.++|+
T Consensus 92 PtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~---------------------l~~~p~Il 150 (876)
T PRK13767 92 PLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKM---------------------LKKPPHIL 150 (876)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHH---------------------HhCCCCEE
Confidence 999999998876553 22 222 6788999998876554322 23457999
Q ss_pred EeCchHHHHhhhcCCC-cCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhcccc
Q 012427 177 VATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (464)
Q Consensus 177 I~T~~~l~~~l~~~~~-~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
|+||++|..++..... ..+.++++||+||+|.+.+...+..+...+..+....
T Consensus 151 VtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-------------------------- 204 (876)
T PRK13767 151 ITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA-------------------------- 204 (876)
T ss_pred EecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc--------------------------
Confidence 9999999877755321 1467899999999999987666655544443332111
Q ss_pred ccccCCCCCCceeeEEeeeeeecCccchhcccc------cCCe-eeecCCcccc---CccccccceeeccCCchHHHHHH
Q 012427 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL------HHPL-FLTTGETRYK---LPERLESYKLICESKLKPLYLVA 325 (464)
Q Consensus 256 ~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~------~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~ 325 (464)
....+.+++|||+.+.......... ..+. ++........ ......... ..........+..
T Consensus 205 --------~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~-~~~~~~~~~~l~~ 275 (876)
T PRK13767 205 --------GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLI-HTPAEEISEALYE 275 (876)
T ss_pred --------CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCcccc-ccccchhHHHHHH
Confidence 0233789999998652211111111 1111 1111100000 000000000 0111111112222
Q ss_pred HHHh--hCCCeEEEEecChhhHHHHHHHHhhcCc---cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCC
Q 012427 326 LLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400 (464)
Q Consensus 326 ~l~~--~~~~~~lVf~~s~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gid 400 (464)
.+.. ..++++||||+++..|+.++..|++... .+..+..+||+++.++|..+++.|++|+.++||||+.++.|||
T Consensus 276 ~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GID 355 (876)
T PRK13767 276 TLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGID 355 (876)
T ss_pred HHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCC
Confidence 2222 1357899999999999999999987321 2357889999999999999999999999999999999999999
Q ss_pred CCCCCeEEEecCCCCcchhhhhhhhhhcCC-CCccEEEEeeC
Q 012427 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTLLHK 441 (464)
Q Consensus 401 ip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g-~~g~~~~~~~~ 441 (464)
+|++++||+++.|.++.+|+||+||+||.+ ..+.+.++...
T Consensus 356 ip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 356 IGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred CCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999999999873 44555555533
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.6e-40 Score=336.38 Aligned_cols=328 Identities=19% Similarity=0.213 Sum_probs=243.5
Q ss_pred HHHHHHHHHCCCCccchhhHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 37 ~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~--~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
+...+....++| +|++.|.++++.+...+.++ ++.++++|||+|||.+++.+++..+..+ .+++|++||++|+
T Consensus 439 ~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g----~qvlvLvPT~~LA 513 (926)
T TIGR00580 439 EWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG----KQVAVLVPTTLLA 513 (926)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC----CeEEEEeCcHHHH
Confidence 334444566899 59999999999998766554 6899999999999999999998887653 4799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhc-CCcEEEeCchHHHHhhhcCCCc
Q 012427 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF 193 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiI~T~~~l~~~l~~~~~~ 193 (464)
.|+++.+++++...++++..++|..+..+. ......+.. .++|+|+||..+ . ..+
T Consensus 514 ~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~------------------~~~~~~l~~g~~dIVIGTp~ll----~--~~v 569 (926)
T TIGR00580 514 QQHFETFKERFANFPVTIELLSRFRSAKEQ------------------NEILKELASGKIDILIGTHKLL----Q--KDV 569 (926)
T ss_pred HHHHHHHHHHhccCCcEEEEEeccccHHHH------------------HHHHHHHHcCCceEEEchHHHh----h--CCC
Confidence 999999999888888999999887664433 122233434 489999999533 2 235
Q ss_pred CCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEee
Q 012427 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (464)
Q Consensus 194 ~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 273 (464)
.+.+++++|+||+|++... ....+..+. ...+++++|
T Consensus 570 ~f~~L~llVIDEahrfgv~-----~~~~L~~~~--------------------------------------~~~~vL~~S 606 (926)
T TIGR00580 570 KFKDLGLLIIDEEQRFGVK-----QKEKLKELR--------------------------------------TSVDVLTLS 606 (926)
T ss_pred CcccCCEEEeecccccchh-----HHHHHHhcC--------------------------------------CCCCEEEEe
Confidence 6788999999999986322 122222221 234789999
Q ss_pred eeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHH-hhCCCeEEEEecChhhHHHHHHHH
Q 012427 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLL 352 (464)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~lVf~~s~~~~~~l~~~l 352 (464)
||+.+...........++..+...... ...+..+... ... ......+.. ...+++++|||++++.++.+++.|
T Consensus 607 ATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~--~~~-~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L 680 (926)
T TIGR00580 607 ATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVME--YDP-ELVREAIRRELLRGGQVFYVHNRIESIEKLATQL 680 (926)
T ss_pred cCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEe--cCH-HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHH
Confidence 998665544444455555544332211 1112222221 111 111111222 235789999999999999999999
Q ss_pred hhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCC-CcchhhhhhhhhhcCCC
Q 012427 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQ 431 (464)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~ 431 (464)
++.. .++++..+||+|+..+|.+++++|.+|+.+|||||+++++|+|+|++++||+++.+. +..+|.|++||+||.|+
T Consensus 681 ~~~~-p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~ 759 (926)
T TIGR00580 681 RELV-PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKK 759 (926)
T ss_pred HHhC-CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCC
Confidence 8751 247899999999999999999999999999999999999999999999999998864 56789999999999999
Q ss_pred CccEEEEeeCcc
Q 012427 432 LGRCFTLLHKDE 443 (464)
Q Consensus 432 ~g~~~~~~~~~~ 443 (464)
.|.|++++....
T Consensus 760 ~g~aill~~~~~ 771 (926)
T TIGR00580 760 KAYAYLLYPHQK 771 (926)
T ss_pred CeEEEEEECCcc
Confidence 999999986643
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-40 Score=340.32 Aligned_cols=343 Identities=22% Similarity=0.277 Sum_probs=245.8
Q ss_pred CCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 30 ~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
++++ +++.+.+.+++.||..|+++|.+++...+ ..++|+++++|||+|||+++.++++..+... +.++++++|
T Consensus 4 ~~l~-l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~---~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P 76 (720)
T PRK00254 4 DELR-VDERIKRVLKERGIEELYPPQAEALKSGV---LEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVP 76 (720)
T ss_pred HHcC-CCHHHHHHHHhCCCCCCCHHHHHHHHHHH---hCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeC
Confidence 3443 89999999999999999999999987632 2589999999999999999999999887653 348999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhc
Q 012427 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (464)
Q Consensus 110 ~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~ 189 (464)
+++|+.|+++.+..+. ..++++..++|+.+.... ....++|+|+||+++..++.+
T Consensus 77 ~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~------------------------~~~~~~IiV~Tpe~~~~ll~~ 131 (720)
T PRK00254 77 LKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE------------------------WLGKYDIIIATAEKFDSLLRH 131 (720)
T ss_pred hHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh------------------------hhccCCEEEEcHHHHHHHHhC
Confidence 9999999999998764 458999999998653221 124569999999999887765
Q ss_pred CCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceee
Q 012427 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (464)
Q Consensus 190 ~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
.. ..++++++||+||+|.+.+.+++..++.++..+.. ..|+
T Consensus 132 ~~-~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~--------------------------------------~~qi 172 (720)
T PRK00254 132 GS-SWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLG--------------------------------------RAQI 172 (720)
T ss_pred Cc-hhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCc--------------------------------------CCcE
Confidence 43 45788999999999999877777777777765432 2389
Q ss_pred EEeeeeeecCccchhcccccCCeeeecCCccccCccc-cccceeeccCC--c-----hHHHHHHHHHhhCCCeEEEEecC
Q 012427 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER-LESYKLICESK--L-----KPLYLVALLQSLGEEKCIVFTSS 341 (464)
Q Consensus 270 i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~-----~~~~l~~~l~~~~~~~~lVf~~s 341 (464)
+++|||+++. ..... ++...... ........... ........... . ....+.+.+. .++++||||++
T Consensus 173 I~lSATl~n~-~~la~-wl~~~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~s 247 (720)
T PRK00254 173 LGLSATVGNA-EELAE-WLNAELVV-SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNT 247 (720)
T ss_pred EEEEccCCCH-HHHHH-HhCCcccc-CCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcC
Confidence 9999999653 22222 11111111 11110000000 00001111111 0 1112223332 36789999999
Q ss_pred hhhHHHHHHHHhhcC------------------------------ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEE
Q 012427 342 VESTHRLCTLLNHFG------------------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391 (464)
Q Consensus 342 ~~~~~~l~~~l~~~~------------------------------~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~ 391 (464)
+..|+.++..|.... .....+..+|++|+.++|..+.+.|++|..++|||
T Consensus 248 r~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLva 327 (720)
T PRK00254 248 RRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITA 327 (720)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 999988876664210 01235889999999999999999999999999999
Q ss_pred cccccccCCCCCCCeEEE-------ecCC-CCcchhhhhhhhhhcCC--CCccEEEEeeCcccccch
Q 012427 392 SDAMTRGMDVEGVNNVVN-------YDKP-AYIKTYIHRAGRTARAG--QLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 392 t~~~~~Gidip~~~~vi~-------~~~~-~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~ 448 (464)
|+++++|+|+|..++||. ++.+ .++.+|.||+|||||.| ..|.+++++..++...++
T Consensus 328 T~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~ 394 (720)
T PRK00254 328 TPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLM 394 (720)
T ss_pred CcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHH
Confidence 999999999999888874 2222 24568999999999975 568889888765433333
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-40 Score=337.69 Aligned_cols=355 Identities=20% Similarity=0.238 Sum_probs=246.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+++++ |++.+.+.+.+.+|. |+++|.+++..+. .++++++++|||+|||+++.+++++.+..+ .++++++
T Consensus 3 ~~~~~-l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~~----~k~v~i~ 72 (674)
T PRK01172 3 ISDLG-YDDEFLNLFTGNDFE-LYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLAG----LKSIYIV 72 (674)
T ss_pred HhhcC-CCHHHHHHHhhCCCC-CCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHhC----CcEEEEe
Confidence 44554 999999999999996 9999999988764 489999999999999999999998877643 4799999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhh
Q 012427 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~ 188 (464)
|+++|+.|.++.+.++. ..|.++....|+...... ..+.++|+|+||+++..++.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~------------------------~~~~~dIiv~Tpek~~~l~~ 127 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD------------------------FIKRYDVVILTSEKADSLIH 127 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh------------------------hhccCCEEEECHHHHHHHHh
Confidence 99999999999998764 357888888887643221 12356999999999988877
Q ss_pred cCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCcee
Q 012427 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (464)
Q Consensus 189 ~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
+.. ..+.+++++|+||+|++.+..++..++.++....... +..+
T Consensus 128 ~~~-~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~-----------------------------------~~~r 171 (674)
T PRK01172 128 HDP-YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN-----------------------------------PDAR 171 (674)
T ss_pred CCh-hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC-----------------------------------cCCc
Confidence 643 4578899999999999887777777776665433211 2348
Q ss_pred eEEeeeeeecCccchhcccccCCeeeecCCccccCcccc---ccceeeccCCchHHHHHHHHHh--hCCCeEEEEecChh
Q 012427 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL---ESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE 343 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~s~~ 343 (464)
++++|||+++. ..... ++....+ ............+ ..... .........+..++.. ..++++||||++++
T Consensus 172 iI~lSATl~n~-~~la~-wl~~~~~-~~~~r~vpl~~~i~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~ 247 (674)
T PRK01172 172 ILALSATVSNA-NELAQ-WLNASLI-KSNFRPVPLKLGILYRKRLIL-DGYERSQVDINSLIKETVNDGGQVLVFVSSRK 247 (674)
T ss_pred EEEEeCccCCH-HHHHH-HhCCCcc-CCCCCCCCeEEEEEecCeeee-cccccccccHHHHHHHHHhCCCcEEEEeccHH
Confidence 89999998643 22222 1111110 0000000000000 00000 0011111112223332 24679999999999
Q ss_pred hHHHHHHHHhhcCc----------------------cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCC
Q 012427 344 STHRLCTLLNHFGE----------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401 (464)
Q Consensus 344 ~~~~l~~~l~~~~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidi 401 (464)
.++.+++.|.+... ....+..+|++|+.++|..+.+.|++|..+|||||+++++|+|+
T Consensus 248 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvni 327 (674)
T PRK01172 248 NAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNL 327 (674)
T ss_pred HHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCC
Confidence 99999998875311 01247789999999999999999999999999999999999999
Q ss_pred CCCCeEEEecC---------CCCcchhhhhhhhhhcCCC--CccEEEEeeCcccccchhhcc-ccccccc
Q 012427 402 EGVNNVVNYDK---------PAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEKKGAIGRSL-FHQSRVL 459 (464)
Q Consensus 402 p~~~~vi~~~~---------~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 459 (464)
|.. .||+.+. +.++.+|.||+|||||.|. .|.+++++...+....+.+.+ ....+++
T Consensus 328 pa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~ 396 (674)
T PRK01172 328 PAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVI 396 (674)
T ss_pred cce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCcee
Confidence 975 5555443 3467789999999999985 556777765544334443333 3333443
No 46
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-40 Score=301.31 Aligned_cols=367 Identities=21% Similarity=0.272 Sum_probs=236.3
Q ss_pred CCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 012427 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (464)
Q Consensus 48 ~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (464)
..++|.||.......+ .+|.+++.|||.|||+++++.+...+... ++ ++|+++||+.|+.|+++.+.++...
T Consensus 13 ~ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWF--GG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhc--CC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 3578999988877665 46999999999999999999999888875 33 8999999999999999999999776
Q ss_pred cCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhh
Q 012427 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
....+..+.|......+ ...+...+|+|+||+.+.+-+..+. .++.++.++|+||||
T Consensus 85 p~~~i~~ltGev~p~~R----------------------~~~w~~~kVfvaTPQvveNDl~~Gr-id~~dv~~lifDEAH 141 (542)
T COG1111 85 PEDEIAALTGEVRPEER----------------------EELWAKKKVFVATPQVVENDLKAGR-IDLDDVSLLIFDEAH 141 (542)
T ss_pred ChhheeeecCCCChHHH----------------------HHHHhhCCEEEeccHHHHhHHhcCc-cChHHceEEEechhh
Confidence 56678888888776655 2334556999999999999888755 889999999999999
Q ss_pred HhhhHhhhhhHHHHH----------Hhccccccccccccccccccccccc---------hhhhccc-----------c--
Q 012427 208 RLLREAYQAWLPTVL----------QLTRSDNENRFSDASTFLPSAFGSL---------KTIRRCG-----------V-- 255 (464)
Q Consensus 208 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-----------~-- 255 (464)
+.......-.+.+.+ ++++++.... ..-......++.- ..+..|. .
T Consensus 142 RAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~--ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~ 219 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDL--EKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPE 219 (542)
T ss_pred hccCcchHHHHHHHHHHhccCceEEEEecCCCCCH--HHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcH
Confidence 986554443333322 2222221110 0000000000000 0000000 0
Q ss_pred ---------------------ccccCCCCCC-------ce--eeEEeeeeeecCccch----------------hc-ccc
Q 012427 256 ---------------------ERGFKDKPYP-------RL--VKMVLSATLTQDPNKL----------------AQ-LDL 288 (464)
Q Consensus 256 ---------------------~~~~~~~~~~-------~~--~~i~~sat~~~~~~~~----------------~~-~~~ 288 (464)
..++.....+ .. ....++.......... .+ .++
T Consensus 220 e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi 299 (542)
T COG1111 220 EIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGI 299 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 0000000000 00 0000010000000000 00 000
Q ss_pred cCCeee--ecCCcccc-Cc--------c-----c---cccceeeccCCchHHHHHHHHHh----hCCCeEEEEecChhhH
Q 012427 289 HHPLFL--TTGETRYK-LP--------E-----R---LESYKLICESKLKPLYLVALLQS----LGEEKCIVFTSSVEST 345 (464)
Q Consensus 289 ~~~~~~--~~~~~~~~-~~--------~-----~---~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~lVf~~s~~~~ 345 (464)
.....+ ........ .. + . ..........++|...+.+++.. ..+.++|||++.++.|
T Consensus 300 ~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTa 379 (542)
T COG1111 300 RPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTA 379 (542)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHH
Confidence 000000 00000000 00 0 0 00001122345666666666643 3567999999999999
Q ss_pred HHHHHHHhhcCccceeEee-------ccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcch
Q 012427 346 HRLCTLLNHFGELRIKIKE-------YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (464)
Q Consensus 346 ~~l~~~l~~~~~~~~~~~~-------~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~ 418 (464)
+.+.++|.+.+.... +.. ...||++.++.+++++|+.|++++||||++.++|+|+|+++.||+|++.+|...
T Consensus 380 e~i~~~L~~~~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR 458 (542)
T COG1111 380 EEIVNFLKKIGIKAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIR 458 (542)
T ss_pred HHHHHHHHhcCCcce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHH
Confidence 999999998763221 111 235899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCccEEEEeeCcccccchh
Q 012427 419 YIHRAGRTARAGQLGRCFTLLHKDEKKGAIG 449 (464)
Q Consensus 419 ~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 449 (464)
++||.||+||. +.|.+++++..++.++.|.
T Consensus 459 ~IQR~GRTGR~-r~Grv~vLvt~gtrdeayy 488 (542)
T COG1111 459 SIQRKGRTGRK-RKGRVVVLVTEGTRDEAYY 488 (542)
T ss_pred HHHhhCccccC-CCCeEEEEEecCchHHHHH
Confidence 99999999998 8999999999998888775
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.1e-40 Score=323.93 Aligned_cols=343 Identities=21% Similarity=0.297 Sum_probs=262.5
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc----cCCccEEEEcc
Q 012427 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLP 109 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~----~~~~~~lil~P 109 (464)
-|++.+++.++.. |.+|++.|..|++.+.. |+|+++.+|||+|||.++++|++..+.... ..+-.+|+++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsP 81 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISP 81 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCc
Confidence 4899999999987 99999999999888876 999999999999999999999999998873 23467999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhc
Q 012427 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (464)
Q Consensus 110 ~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~ 189 (464)
-++|..++.+.+..++..+|+++...+|+++...+..... +.++|+|+||++|.-++..
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~---------------------~PPdILiTTPEsL~lll~~ 140 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLK---------------------NPPHILITTPESLAILLNS 140 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccC---------------------CCCcEEEeChhHHHHHhcC
Confidence 9999999999999999999999999999998776654433 4469999999999887766
Q ss_pred CCC-cCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCcee
Q 012427 190 TRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (464)
Q Consensus 190 ~~~-~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
... -.+.++.++||||.|.+.....+.++.-.+..+.... +.+|
T Consensus 141 ~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~-----------------------------------~~~q 185 (814)
T COG1201 141 PKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELA-----------------------------------GDFQ 185 (814)
T ss_pred HHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC-----------------------------------cccE
Confidence 321 2488999999999999988777766655554443211 1459
Q ss_pred eEEeeeeeecCccchhcccccC-C-eeeecCCccccCcccc---cccee-eccCCchHHHHHHHHHhhCCCeEEEEecCh
Q 012427 269 KMVLSATLTQDPNKLAQLDLHH-P-LFLTTGETRYKLPERL---ESYKL-ICESKLKPLYLVALLQSLGEEKCIVFTSSV 342 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~ 342 (464)
.|++|||..+.........-.. + .++.........-..+ ..... -.........+.++++++ ..+|||+|++
T Consensus 186 RIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR 263 (814)
T COG1201 186 RIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTNTR 263 (814)
T ss_pred EEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEeCh
Confidence 9999999964333222222221 1 2332222111000000 00000 001112233344444443 4899999999
Q ss_pred hhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhh
Q 012427 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 422 (464)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~ 422 (464)
..++.++..|++... ..+...||.++.+.|.++.++|++|+++.+|||+.++-|||+.+++.||+++.|.++..++||
T Consensus 264 ~~aE~l~~~L~~~~~--~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQR 341 (814)
T COG1201 264 SGAERLAFRLKKLGP--DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQR 341 (814)
T ss_pred HHHHHHHHHHHHhcC--CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHh
Confidence 999999999998653 678889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcC-CCCccEEEEeeC
Q 012427 423 AGRTARA-GQLGRCFTLLHK 441 (464)
Q Consensus 423 ~GR~~R~-g~~g~~~~~~~~ 441 (464)
+||+|+. +...+++++..+
T Consensus 342 iGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 342 IGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccccccccCCcccEEEEecC
Confidence 9999965 455667766655
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.7e-39 Score=325.20 Aligned_cols=326 Identities=18% Similarity=0.222 Sum_probs=236.1
Q ss_pred HHHHHHHHHCCCCccchhhHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 37 ~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~--~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
..+.+....++| +|++.|.++++.+...+..+ .+.++++|||+|||.+++++++..+.. +.+++|++||++|+
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA 323 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILA 323 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHH
Confidence 444555677899 69999999999998765443 579999999999999999999887764 44799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhc-CCcEEEeCchHHHHhhhcCCCc
Q 012427 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF 193 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiI~T~~~l~~~l~~~~~~ 193 (464)
.|+++.+++++...++++..++|+.+...+. ..+..+.. .++|+|+||..+.+ ..
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~------------------~~~~~l~~g~~~IvVgT~~ll~~------~v 379 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERR------------------EILEAIASGEADIVIGTHALIQD------DV 379 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHH------------------HHHHHHhCCCCCEEEchHHHhcc------cc
Confidence 9999999999988899999999998765542 22233444 48999999987633 24
Q ss_pred CCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEee
Q 012427 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (464)
Q Consensus 194 ~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 273 (464)
.+.+++++|+||+|++...... .+.... ...+.+++|
T Consensus 380 ~~~~l~lvVIDE~Hrfg~~qr~-----~l~~~~--------------------------------------~~~~iL~~S 416 (681)
T PRK10917 380 EFHNLGLVIIDEQHRFGVEQRL-----ALREKG--------------------------------------ENPHVLVMT 416 (681)
T ss_pred hhcccceEEEechhhhhHHHHH-----HHHhcC--------------------------------------CCCCEEEEe
Confidence 4678999999999987432211 111110 123789999
Q ss_pred eeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHH-h-hCCCeEEEEecChh--------
Q 012427 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-S-LGEEKCIVFTSSVE-------- 343 (464)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~~~~~lVf~~s~~-------- 343 (464)
||+.+...........+...+.... .....+..... ... +...+.+.+. . ..+.+++|||+.++
T Consensus 417 ATp~prtl~~~~~g~~~~s~i~~~p---~~r~~i~~~~~--~~~-~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~ 490 (681)
T PRK10917 417 ATPIPRTLAMTAYGDLDVSVIDELP---PGRKPITTVVI--PDS-RRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQ 490 (681)
T ss_pred CCCCHHHHHHHHcCCCceEEEecCC---CCCCCcEEEEe--Ccc-cHHHHHHHHHHHHHcCCcEEEEEcccccccchhHH
Confidence 9985543333222222222221111 00111221111 122 2222222332 2 35679999999654
Q ss_pred hHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCC-Ccchhhhh
Q 012427 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHR 422 (464)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~-s~~~~~Q~ 422 (464)
.++.+++.|.+.. .++.+..+||+|+..+|++++++|++|+.+|||||+++++|+|+|++++||+++.+. ....+.|+
T Consensus 491 ~~~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~ 569 (681)
T PRK10917 491 SAEETYEELQEAF-PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQL 569 (681)
T ss_pred HHHHHHHHHHHHC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHH
Confidence 4566777777642 226899999999999999999999999999999999999999999999999999886 46789999
Q ss_pred hhhhhcCCCCccEEEEeeC
Q 012427 423 AGRTARAGQLGRCFTLLHK 441 (464)
Q Consensus 423 ~GR~~R~g~~g~~~~~~~~ 441 (464)
+||+||.|..|.|++++..
T Consensus 570 ~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 570 RGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred hhcccCCCCceEEEEEECC
Confidence 9999999999999999953
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=4.4e-39 Score=322.79 Aligned_cols=328 Identities=17% Similarity=0.228 Sum_probs=235.7
Q ss_pred HHHHHHHHHCCCCccchhhHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 37 ~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~--~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
..+.+.++.++| +|++.|.+++..+...+... .+.++++|||+|||.+++++++..+.. +.+++|++||++|+
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA 297 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILA 297 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHH
Confidence 445667788999 79999999999998765433 478999999999999999999887764 34899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeCchHHHHhhhcCCCc
Q 012427 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGF 193 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T~~~l~~~l~~~~~~ 193 (464)
.|+++.+++++...|+++..++|+.+...+. ..+..+. ..++|+|+||..+.+ .+
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~------------------~~~~~i~~g~~~IiVgT~~ll~~------~~ 353 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRK------------------ELLETIASGQIHLVVGTHALIQE------KV 353 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHH------------------HHHHHHhCCCCCEEEecHHHHhc------cc
Confidence 9999999999988899999999998765542 2223333 347999999987643 24
Q ss_pred CCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEee
Q 012427 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (464)
Q Consensus 194 ~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 273 (464)
.+.+++++|+||+|++...... .+....... ...+.+++|
T Consensus 354 ~~~~l~lvVIDEaH~fg~~qr~----~l~~~~~~~------------------------------------~~~~~l~~S 393 (630)
T TIGR00643 354 EFKRLALVIIDEQHRFGVEQRK----KLREKGQGG------------------------------------FTPHVLVMS 393 (630)
T ss_pred cccccceEEEechhhccHHHHH----HHHHhcccC------------------------------------CCCCEEEEe
Confidence 5678999999999987432211 111111000 123789999
Q ss_pred eeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCCeEEEEecCh--------h
Q 012427 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV--------E 343 (464)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~s~--------~ 343 (464)
||+.+...........+...+.... .....+..... ....+ ..+...+.. ..+.+++|||+.+ .
T Consensus 394 ATp~prtl~l~~~~~l~~~~i~~~p---~~r~~i~~~~~--~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~ 467 (630)
T TIGR00643 394 ATPIPRTLALTVYGDLDTSIIDELP---PGRKPITTVLI--KHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLK 467 (630)
T ss_pred CCCCcHHHHHHhcCCcceeeeccCC---CCCCceEEEEe--CcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHH
Confidence 9975543322211111111111000 00011111111 12222 233333332 2467899999876 3
Q ss_pred hHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCC-Ccchhhhh
Q 012427 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHR 422 (464)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~-s~~~~~Q~ 422 (464)
.++.+++.|.+.- .++.+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.+. +...+.|+
T Consensus 468 ~a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~ 546 (630)
T TIGR00643 468 AAEALYERLKKAF-PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQL 546 (630)
T ss_pred HHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHH
Confidence 4667777776532 347899999999999999999999999999999999999999999999999999886 57789999
Q ss_pred hhhhhcCCCCccEEEEee
Q 012427 423 AGRTARAGQLGRCFTLLH 440 (464)
Q Consensus 423 ~GR~~R~g~~g~~~~~~~ 440 (464)
+||+||.|+.|.|++++.
T Consensus 547 ~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 547 RGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred hhhcccCCCCcEEEEEEC
Confidence 999999999999999984
No 50
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.2e-39 Score=307.18 Aligned_cols=331 Identities=22% Similarity=0.316 Sum_probs=251.3
Q ss_pred HHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 012427 39 LKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 39 i~~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~ 117 (464)
+...|+. +||..+|+.|.+++..++. ++++++.+|||.|||++|.+|++-. ...+|||+|..+|++.+
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPAll~-------~G~TLVVSPLiSLM~DQ 73 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPALLL-------EGLTLVVSPLISLMKDQ 73 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHHHhc-------CCCEEEECchHHHHHHH
Confidence 3455665 7999999999999888776 8999999999999999999998843 22699999999999999
Q ss_pred HHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcC-CcEEEeCchHHHHhhhcCCCcCCC
Q 012427 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLE 196 (464)
Q Consensus 118 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IiI~T~~~l~~~l~~~~~~~~~ 196 (464)
.+.++.. |+.+..+.+..+.... ..++..+..+ .+++..+|+++..-..... +...
T Consensus 74 V~~l~~~----Gi~A~~lnS~l~~~e~------------------~~v~~~l~~g~~klLyisPErl~~~~f~~~-L~~~ 130 (590)
T COG0514 74 VDQLEAA----GIRAAYLNSTLSREER------------------QQVLNQLKSGQLKLLYISPERLMSPRFLEL-LKRL 130 (590)
T ss_pred HHHHHHc----CceeehhhcccCHHHH------------------HHHHHHHhcCceeEEEECchhhcChHHHHH-HHhC
Confidence 9998887 7888888887655444 3333444444 7999999999854211100 2234
Q ss_pred CccEEEEehhhHhhhHh--hhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeee
Q 012427 197 HLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (464)
Q Consensus 197 ~~~~iIvDE~H~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 274 (464)
.+.+++|||||++..++ |++...++-..... .+....+.+||
T Consensus 131 ~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~------------------------------------~~~~p~~AlTA 174 (590)
T COG0514 131 PISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG------------------------------------LPNPPVLALTA 174 (590)
T ss_pred CCceEEechHHHHhhcCCccCHhHHHHHHHHhh------------------------------------CCCCCEEEEeC
Confidence 68899999999998886 66666555544322 13446788988
Q ss_pred eeecCccchh--cccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHH
Q 012427 275 TLTQDPNKLA--QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (464)
Q Consensus 275 t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l 352 (464)
|..+.....+ .+.+..+..+......+.+...+.... ....+...+.+ ......+.+||||.|+..++.+++.|
T Consensus 175 TA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~---~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L 250 (590)
T COG0514 175 TATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKG---EPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWL 250 (590)
T ss_pred CCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcc---cHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHH
Confidence 8876655543 344555544444443333322211111 11222222222 12445667999999999999999999
Q ss_pred hhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCC
Q 012427 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (464)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~ 432 (464)
.+.+ +.+..||++|+.++|..+.++|..++.+|+|||.+++.|||-|++..|||++.|.|+..|.|-+|||||+|..
T Consensus 251 ~~~g---~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~ 327 (590)
T COG0514 251 RKNG---ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLP 327 (590)
T ss_pred HHCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCc
Confidence 9876 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeeCccccc
Q 012427 433 GRCFTLLHKDEKKG 446 (464)
Q Consensus 433 g~~~~~~~~~~~~~ 446 (464)
..|+++++..|...
T Consensus 328 a~aill~~~~D~~~ 341 (590)
T COG0514 328 AEAILLYSPEDIRW 341 (590)
T ss_pred ceEEEeeccccHHH
Confidence 99999999887653
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2e-38 Score=330.52 Aligned_cols=328 Identities=18% Similarity=0.193 Sum_probs=243.9
Q ss_pred CHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 36 ~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~--~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
.++..+....++| .|++.|.++++.+...+..+ ++++++++||+|||.+++.++...+.. +.+++||+||++|
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~----g~qvlvLvPT~eL 661 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN----HKQVAVLVPTTLL 661 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc----CCeEEEEeCcHHH
Confidence 4566777788999 79999999999988754433 789999999999999988877766543 4589999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeCchHHHHhhhcCCC
Q 012427 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG 192 (464)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T~~~l~~~l~~~~~ 192 (464)
+.|+++.+.+.+...++++..++|..+...+.. .+..+. .+++|+|+||+.+. ..
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~------------------il~~l~~g~~dIVVgTp~lL~------~~ 717 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQ------------------ILAEAAEGKIDILIGTHKLLQ------SD 717 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHH------------------HHHHHHhCCCCEEEECHHHHh------CC
Confidence 999999999877766888888888877655422 222333 35899999997542 12
Q ss_pred cCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEe
Q 012427 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (464)
Q Consensus 193 ~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (464)
+.+.+++++|+||+|++... ....+..+. ...+++++
T Consensus 718 v~~~~L~lLVIDEahrfG~~-----~~e~lk~l~--------------------------------------~~~qvLl~ 754 (1147)
T PRK10689 718 VKWKDLGLLIVDEEHRFGVR-----HKERIKAMR--------------------------------------ADVDILTL 754 (1147)
T ss_pred CCHhhCCEEEEechhhcchh-----HHHHHHhcC--------------------------------------CCCcEEEE
Confidence 45678999999999997221 122222221 23488999
Q ss_pred eeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh-hCCCeEEEEecChhhHHHHHHH
Q 012427 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTL 351 (464)
Q Consensus 273 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~lVf~~s~~~~~~l~~~ 351 (464)
|||+.+........++.++..+...... ...+..+...... ......++.. ..+++++|||++++.++.+++.
T Consensus 755 SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~---~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~ 828 (1147)
T PRK10689 755 TATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDS---LVVREAILREILRGGQVYYLYNDVENIQKAAER 828 (1147)
T ss_pred cCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCc---HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHH
Confidence 9998776666555566676655432221 1122222221111 1111222222 2467899999999999999999
Q ss_pred HhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC-CCcchhhhhhhhhhcCC
Q 012427 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAG 430 (464)
Q Consensus 352 l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g 430 (464)
|++.. .+..+..+||+|+..+|.+++.+|++|+.+|||||+++++|+|+|++++||+.+.+ .+..+|.|++||+||.|
T Consensus 829 L~~~~-p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g 907 (1147)
T PRK10689 829 LAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 (1147)
T ss_pred HHHhC-CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCC
Confidence 98752 23688899999999999999999999999999999999999999999999977554 45678999999999999
Q ss_pred CCccEEEEeeCc
Q 012427 431 QLGRCFTLLHKD 442 (464)
Q Consensus 431 ~~g~~~~~~~~~ 442 (464)
+.|.|++++...
T Consensus 908 ~~g~a~ll~~~~ 919 (1147)
T PRK10689 908 HQAYAWLLTPHP 919 (1147)
T ss_pred CceEEEEEeCCC
Confidence 999999887543
No 52
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8.9e-38 Score=286.37 Aligned_cols=358 Identities=24% Similarity=0.277 Sum_probs=270.8
Q ss_pred CCCCCccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHH
Q 012427 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (464)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~ 93 (464)
|-.......-.+..+++.|+ +|+.+++.++..|+.++.|.|..++. +-+..|.|.++.++|+||||++.-++-+..
T Consensus 181 yD~v~a~~~~~~r~~vdeLd-ipe~fk~~lk~~G~~eLlPVQ~laVe---~GLLeG~nllVVSaTasGKTLIgElAGi~~ 256 (830)
T COG1202 181 YDEVTAETDEVERVPVDELD-IPEKFKRMLKREGIEELLPVQVLAVE---AGLLEGENLLVVSATASGKTLIGELAGIPR 256 (830)
T ss_pred ceeeeccccccccccccccC-CcHHHHHHHHhcCcceecchhhhhhh---hccccCCceEEEeccCCCcchHHHhhCcHH
Confidence 33333344445668899996 99999999999999999999998854 345679999999999999999999998888
Q ss_pred HHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCC
Q 012427 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (464)
Q Consensus 94 ~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (464)
++.+ +.+.|+++|..+|+.|-++.|+.-...+|+.+.+-.|-.-+.....- +.......+
T Consensus 257 ~l~~---g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~p-----------------v~~~t~~dA 316 (830)
T COG1202 257 LLSG---GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP-----------------VVVDTSPDA 316 (830)
T ss_pred HHhC---CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCc-----------------cccCCCCCC
Confidence 8864 44899999999999999999998878889988888887654332110 111223457
Q ss_pred cEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhcc
Q 012427 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253 (464)
Q Consensus 174 ~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (464)
+|||+||+-+-.+++.+ ..+.++++||+||+|.+-+...+..+.-+++.+..-.
T Consensus 317 DIIVGTYEGiD~lLRtg--~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~------------------------ 370 (830)
T COG1202 317 DIIVGTYEGIDYLLRTG--KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF------------------------ 370 (830)
T ss_pred cEEEeechhHHHHHHcC--CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC------------------------
Confidence 99999999998888775 5578999999999998877676666666665544321
Q ss_pred ccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeecc-CCchHHHHHHHHHhh--
Q 012427 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSL-- 330 (464)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~-- 330 (464)
+..|.|.+|||..+. .......-.+.+.++.. |..++.....+. ...|...+..+.+..
T Consensus 371 -----------~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~R------PVplErHlvf~~~e~eK~~ii~~L~k~E~~ 432 (830)
T COG1202 371 -----------PGAQFIYLSATVGNP-EELAKKLGAKLVLYDER------PVPLERHLVFARNESEKWDIIARLVKREFS 432 (830)
T ss_pred -----------CCCeEEEEEeecCCh-HHHHHHhCCeeEeecCC------CCChhHeeeeecCchHHHHHHHHHHHHHHh
Confidence 445999999999544 44443333333333322 222333333333 555666555554322
Q ss_pred ------CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCC
Q 012427 331 ------GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404 (464)
Q Consensus 331 ------~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~ 404 (464)
-.+++|||+.|+..|..++.+|...| +++..||++++-.+|+.+...|.++++..+|+|.+++.|+|+|.
T Consensus 433 ~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG---~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPA- 508 (830)
T COG1202 433 TESSKGYRGQTIVFTYSRRRCHELADALTGKG---LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPA- 508 (830)
T ss_pred hhhccCcCCceEEEecchhhHHHHHHHhhcCC---cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCch-
Confidence 24589999999999999999999877 99999999999999999999999999999999999999999995
Q ss_pred CeEEEec-----CCCCcchhhhhhhhhhcCC--CCccEEEEeeCcc
Q 012427 405 NNVVNYD-----KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDE 443 (464)
Q Consensus 405 ~~vi~~~-----~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~ 443 (464)
+.||+-. ..-|+..|.||.|||||.+ ..|++++++....
T Consensus 509 SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 509 SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 5555433 2357899999999999987 5677777765443
No 53
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=6.3e-37 Score=299.80 Aligned_cols=311 Identities=18% Similarity=0.172 Sum_probs=213.1
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
..|+++|.+++..++. +.++++++|||+|||+++...+...+.. ...++|||+||++|+.||.+.+++++...
T Consensus 113 ~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~---~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLEN---YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred CCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 4899999999887765 7789999999999999865433222222 23379999999999999999999986543
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012427 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
...+..+.++.... .+.+|+|+||+++.+... ..++++++||+||||+
T Consensus 186 ~~~~~~i~~g~~~~----------------------------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~ 233 (501)
T PHA02558 186 REAMHKIYSGTAKD----------------------------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHL 233 (501)
T ss_pred ccceeEEecCcccC----------------------------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhc
Confidence 34454455543211 235899999999876432 2357899999999999
Q ss_pred hhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhc-cc
Q 012427 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LD 287 (464)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~-~~ 287 (464)
+.+..+.. ++..+.. ..+.+++|||+......... ..
T Consensus 234 ~~~~~~~~----il~~~~~--------------------------------------~~~~lGLTATp~~~~~~~~~~~~ 271 (501)
T PHA02558 234 FTGKSLTS----IITKLDN--------------------------------------CKFKFGLTGSLRDGKANILQYVG 271 (501)
T ss_pred ccchhHHH----HHHhhhc--------------------------------------cceEEEEeccCCCccccHHHHHH
Confidence 97655433 3322221 12678999998543221110 11
Q ss_pred ccCCeeeecCCcc---------------------ccCc----cccc-cceeeccCCchHHHHHHHHHhh--CCCeEEEEe
Q 012427 288 LHHPLFLTTGETR---------------------YKLP----ERLE-SYKLICESKLKPLYLVALLQSL--GEEKCIVFT 339 (464)
Q Consensus 288 ~~~~~~~~~~~~~---------------------~~~~----~~~~-~~~~~~~~~~~~~~l~~~l~~~--~~~~~lVf~ 339 (464)
...+........+ .... .... .+........+...+..+.... .+.+++|||
T Consensus 272 ~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~ 351 (501)
T PHA02558 272 LFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMF 351 (501)
T ss_pred hhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1111111111000 0000 0000 0001111222333333333322 467899999
Q ss_pred cChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEc-ccccccCCCCCCCeEEEecCCCCcch
Q 012427 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKT 418 (464)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t-~~~~~Gidip~~~~vi~~~~~~s~~~ 418 (464)
.++++++.+++.|++.+ ..+..+||+|+..+|..+++.|+.++..+||+| +++++|+|+|++++||++.++.|...
T Consensus 352 ~~~~h~~~L~~~L~~~g---~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~ 428 (501)
T PHA02558 352 KYVEHGKPLYEMLKKVY---DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKII 428 (501)
T ss_pred EEHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhh
Confidence 99999999999999876 789999999999999999999999998999998 89999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCccEEEEeeCcc
Q 012427 419 YIHRAGRTARAGQLGRCFTLLHKDE 443 (464)
Q Consensus 419 ~~Q~~GR~~R~g~~g~~~~~~~~~~ 443 (464)
|+|++||++|.+..+..+.++|--|
T Consensus 429 ~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 429 VLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred hhhhhhccccCCCCCceEEEEEeec
Confidence 9999999999987665555554333
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.3e-36 Score=301.71 Aligned_cols=330 Identities=20% Similarity=0.225 Sum_probs=228.5
Q ss_pred HHHHHHH-CCCCccchhhHHhHHhhhCCCCCCC-CEEEECCCCchhHHHhHHHHHHHHHhhccCCcc-EEEEcccHHHHH
Q 012427 39 LKVALQN-MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-ALVVLPTRDLAL 115 (464)
Q Consensus 39 i~~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~-~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~-~lil~P~~~L~~ 115 (464)
+-..+++ .||. |++||.++++.++. |+ ++++.+|||+|||.++.++++.. ..+ ...++ +++++|+++|+.
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~----G~~~v~~~apTGSGKTaa~aafll~~-~~~-~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVA----GQPPESCSTPTGLGKTSIIAAWLLAV-EIG-AKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHc----CCCcceEecCCCCcccHHHHHhhccc-ccc-ccccceEEEeCchHHHHH
Confidence 3344444 5886 99999999888775 76 68889999999998665444422 222 22334 445779999999
Q ss_pred HHHHHHHHhcccc-----------------------CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcC
Q 012427 116 QVKDVFAAIAPAV-----------------------GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (464)
Q Consensus 116 q~~~~~~~~~~~~-----------------------~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (464)
|+++.+.+++..+ ++++..++|+.+...+. ..+..+
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---------------------~~l~~~ 135 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---------------------MLDPHR 135 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---------------------HhcCCC
Confidence 9999999988755 37888899998765553 345567
Q ss_pred CcEEEeCchHHHH-hhhcCCCc----------CCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccc
Q 012427 173 VDILVATPGRLMD-HINATRGF----------TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241 (464)
Q Consensus 173 ~~IiI~T~~~l~~-~l~~~~~~----------~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (464)
++|||+|++.+.+ .+.++++. .+.+..++|+|||| ++.+|...+..|+..+.....
T Consensus 136 p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~----------- 202 (844)
T TIGR02621 136 PAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD----------- 202 (844)
T ss_pred CcEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc-----------
Confidence 8999999766643 22111111 15778999999999 578888888888875421100
Q ss_pred cccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHH
Q 012427 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 321 (464)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (464)
..+.|.++||||++..........+.++..+....... ....+.++. ......+..
T Consensus 203 ----------------------~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l-~a~ki~q~v-~v~~e~Kl~ 258 (844)
T TIGR02621 203 ----------------------FLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL-AAKKIVKLV-PPSDEKFLS 258 (844)
T ss_pred ----------------------cccceEEEEecCCCccHHHHHHHHccCCceeecccccc-cccceEEEE-ecChHHHHH
Confidence 01248999999997765555444444444443322221 112222222 222223333
Q ss_pred HHHHHH---HhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHH-----HHHHHHhc----CC----
Q 012427 322 YLVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS-----KTLKAFRE----GK---- 385 (464)
Q Consensus 322 ~l~~~l---~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----~~---- 385 (464)
.+...+ ....++++||||++++.|+.+++.|++.+ + ..+||+|+..+|. .++++|+. ++
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~ 333 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK---F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARP 333 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC---C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccc
Confidence 322222 12356789999999999999999998765 3 7899999999999 77889986 43
Q ss_pred ---eeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccE-EEEeeC
Q 012427 386 ---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC-FTLLHK 441 (464)
Q Consensus 386 ---~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~-~~~~~~ 441 (464)
..|||||+++++|+|++. ++||....| ..+|+||+||+||.|+.|.+ +++++.
T Consensus 334 ~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 334 QQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 689999999999999986 788876655 68999999999999986444 555533
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=4.9e-37 Score=321.63 Aligned_cols=313 Identities=21% Similarity=0.282 Sum_probs=216.1
Q ss_pred EECCCCchhHHHhHHHHHHHHHhhc---------cCCccEEEEcccHHHHHHHHHHHHHhc------------cccCceE
Q 012427 74 INSPTGSGKTLSYALPIVQTLSNRA---------VRCLRALVVLPTRDLALQVKDVFAAIA------------PAVGLSV 132 (464)
Q Consensus 74 i~~~tG~GKT~~~~~~~l~~~~~~~---------~~~~~~lil~P~~~L~~q~~~~~~~~~------------~~~~~~v 132 (464)
+++|||||||+++++++++.+.... ..+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 4799999999999999999887532 135689999999999999999887421 1236899
Q ss_pred EEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhH
Q 012427 133 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (464)
Q Consensus 133 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~ 212 (464)
...+|+.+..++... +.+.++|+|+||++|..++.+.....++++++|||||+|.+.+.
T Consensus 81 ~vrtGDt~~~eR~rl---------------------l~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~ 139 (1490)
T PRK09751 81 GIRTGDTPAQERSKL---------------------TRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGS 139 (1490)
T ss_pred EEEECCCCHHHHHHH---------------------hcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhccc
Confidence 999999887665332 23457999999999998876533346889999999999999876
Q ss_pred hhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhc-ccccCC
Q 012427 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDLHHP 291 (464)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~-~~~~~~ 291 (464)
.++..+...+..+.... ..+.|.|++|||+.+. ..... .....+
T Consensus 140 kRG~~Lel~LeRL~~l~----------------------------------~~~~QrIgLSATI~n~-eevA~~L~g~~p 184 (1490)
T PRK09751 140 KRGAHLALSLERLDALL----------------------------------HTSAQRIGLSATVRSA-SDVAAFLGGDRP 184 (1490)
T ss_pred ccccHHHHHHHHHHHhC----------------------------------CCCCeEEEEEeeCCCH-HHHHHHhcCCCC
Confidence 55555444443332110 0234899999999763 33332 222223
Q ss_pred eeeecCCccccCccccccceeeccC--------------------Cc-hHHHHHHHHHh-hCCCeEEEEecChhhHHHHH
Q 012427 292 LFLTTGETRYKLPERLESYKLICES--------------------KL-KPLYLVALLQS-LGEEKCIVFTSSVESTHRLC 349 (464)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~-~~~~l~~~l~~-~~~~~~lVf~~s~~~~~~l~ 349 (464)
..+........ ..+... ..... .. .......++.. ..+.++||||+|+..|+.++
T Consensus 185 v~Iv~~~~~r~--~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La 261 (1490)
T PRK09751 185 VTVVNPPAMRH--PQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLT 261 (1490)
T ss_pred EEEECCCCCcc--cceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHH
Confidence 32211111000 011100 00000 00 00111122222 24678999999999999999
Q ss_pred HHHhhcCc------------------------------cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccC
Q 012427 350 TLLNHFGE------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399 (464)
Q Consensus 350 ~~l~~~~~------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gi 399 (464)
..|++... ....+..+||+|+.++|..+.+.|++|++++||||+.++.||
T Consensus 262 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGI 341 (1490)
T PRK09751 262 ARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGI 341 (1490)
T ss_pred HHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccC
Confidence 99976421 012356899999999999999999999999999999999999
Q ss_pred CCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012427 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 400 dip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
|++++++||+++.|.++.+|+||+||+||. ..|.+..++...+..+
T Consensus 342 DIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~d 387 (1490)
T PRK09751 342 DMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRD 387 (1490)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHH
Confidence 999999999999999999999999999997 3444333343334333
No 56
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.1e-37 Score=301.48 Aligned_cols=328 Identities=19% Similarity=0.189 Sum_probs=224.5
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.||+||.+++..++..- ..++.++++|||+|||++.+.++.. + ..++|||||+..|+.||.+++.+++....
T Consensus 255 ~LRpYQ~eAl~~~~~~g-r~r~GIIvLPtGaGKTlvai~aa~~-l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVTAACT-V------KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcC-CCCCcEEEeCCCCChHHHHHHHHHH-h------CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 59999999988876411 1257899999999999998765543 2 23699999999999999999999875445
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcC-------CCcCCCCccEEE
Q 012427 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-------RGFTLEHLCYLV 202 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~-------~~~~~~~~~~iI 202 (464)
..+..+.|+.... ......|+|+||+++.+...+. ..+.-..+++||
T Consensus 327 ~~I~~~tg~~k~~--------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII 380 (732)
T TIGR00603 327 SQICRFTSDAKER--------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLIL 380 (732)
T ss_pred ceEEEEecCcccc--------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEE
Confidence 5666666654211 1123589999999886432221 112234689999
Q ss_pred EehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccc
Q 012427 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (464)
Q Consensus 203 vDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 282 (464)
+||||++.+..+...+..+ .. ...+++|||+......
T Consensus 381 ~DEvH~lpA~~fr~il~~l----~a---------------------------------------~~RLGLTATP~ReD~~ 417 (732)
T TIGR00603 381 LDEVHVVPAAMFRRVLTIV----QA---------------------------------------HCKLGLTATLVREDDK 417 (732)
T ss_pred EEccccccHHHHHHHHHhc----Cc---------------------------------------CcEEEEeecCcccCCc
Confidence 9999999776655433322 11 1457888888644332
Q ss_pred hhcc-cccCCeeeecCCccccCcccc--------------------------ccceeeccCCchHHHHHHHHHhh--CCC
Q 012427 283 LAQL-DLHHPLFLTTGETRYKLPERL--------------------------ESYKLICESKLKPLYLVALLQSL--GEE 333 (464)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~l~~~l~~~--~~~ 333 (464)
.... ++..|.++...-.+......+ ...........|...+..+++.+ .+.
T Consensus 418 ~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~ 497 (732)
T TIGR00603 418 ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGD 497 (732)
T ss_pred hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCC
Confidence 2111 122233322211100000000 00011112234455555566544 678
Q ss_pred eEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcC-CeeEEEEcccccccCCCCCCCeEEEecC
Q 012427 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYDK 412 (464)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~iLi~t~~~~~Gidip~~~~vi~~~~ 412 (464)
++||||.+...+..+++.|. +..+||+++..+|..++++|+.+ ..++||+|+++++|+|+|++++||+++.
T Consensus 498 kiLVF~~~~~~l~~~a~~L~--------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~ 569 (732)
T TIGR00603 498 KIIVFSDNVFALKEYAIKLG--------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISS 569 (732)
T ss_pred eEEEEeCCHHHHHHHHHHcC--------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCC
Confidence 99999999999999988773 24589999999999999999875 7899999999999999999999999998
Q ss_pred C-CCcchhhhhhhhhhcCCCCccE-------EEEeeCcccccchhhccccccccccccCC
Q 012427 413 P-AYIKTYIHRAGRTARAGQLGRC-------FTLLHKDEKKGAIGRSLFHQSRVLGVGWS 464 (464)
Q Consensus 413 ~-~s~~~~~Q~~GR~~R~g~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (464)
+ .|...|+||+||++|.++.|.+ +.+++.++.++.+. --.++.+..+||+
T Consensus 570 ~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s--~~Rq~fl~~qGY~ 627 (732)
T TIGR00603 570 HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYS--TKRQRFLVDQGYS 627 (732)
T ss_pred CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHH--HHHHHHHHHCCCe
Confidence 7 5999999999999999876664 88888888888773 3344455666663
No 57
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.9e-36 Score=301.70 Aligned_cols=356 Identities=25% Similarity=0.287 Sum_probs=256.3
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
+++.+.+.++..++.++.+.|+.++...+. .++|+++++|||+|||++++++++..+.++ +.++++++|+++|+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa 89 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALA 89 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHH
Confidence 788999999999999999999998655544 479999999999999999999999998875 44899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcC
Q 012427 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~ 194 (464)
.+.++++. .+...|++|...+|+....++ -..+++|+|+||+++-.++++... .
T Consensus 90 ~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~------------------------~l~~~~ViVtT~EK~Dsl~R~~~~-~ 143 (766)
T COG1204 90 EEKYEEFS-RLEELGIRVGISTGDYDLDDE------------------------RLARYDVIVTTPEKLDSLTRKRPS-W 143 (766)
T ss_pred HHHHHHhh-hHHhcCCEEEEecCCcccchh------------------------hhccCCEEEEchHHhhHhhhcCcc-h
Confidence 99999999 445569999999999875553 235679999999999888887654 6
Q ss_pred CCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeee
Q 012427 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 274 (464)
+.+++++|+||+|.+.+...++.++.+....+... +..+++.+||
T Consensus 144 ~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~-----------------------------------~~~rivgLSA 188 (766)
T COG1204 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN-----------------------------------ELIRIVGLSA 188 (766)
T ss_pred hhcccEEEEeeeeecCCcccCceehhHHHHHHhhC-----------------------------------cceEEEEEee
Confidence 78899999999998777667777777777654322 2358999999
Q ss_pred eeecCccchhcccccCC-eeeecCCccccCccccccceeec-----cCCchHHHHHHHHHhh-CCCeEEEEecChhhHHH
Q 012427 275 TLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKLIC-----ESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHR 347 (464)
Q Consensus 275 t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~-~~~~~lVf~~s~~~~~~ 347 (464)
|+++...-..+..-... ..+.+.......+.....+.... +.......+..++... .++.+||||+|+..+..
T Consensus 189 TlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~ 268 (766)
T COG1204 189 TLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEK 268 (766)
T ss_pred ecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHH
Confidence 99665544444333322 11111111112222211111111 1112233333333333 56799999999999999
Q ss_pred HHHHHhhc---------------C---c----------------cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc
Q 012427 348 LCTLLNHF---------------G---E----------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (464)
Q Consensus 348 l~~~l~~~---------------~---~----------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~ 393 (464)
.++.+... + . ....+...|++++.++|..+.+.|+.|.++||+||+
T Consensus 269 ~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~Tp 348 (766)
T COG1204 269 TAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTP 348 (766)
T ss_pred HHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEech
Confidence 99998830 0 0 112477899999999999999999999999999999
Q ss_pred cccccCCCCCCCeEEE-----ec-----CCCCcchhhhhhhhhhcCCC--CccEEEEeeCcccccchhhccccccccc
Q 012427 394 AMTRGMDVEGVNNVVN-----YD-----KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEKKGAIGRSLFHQSRVL 459 (464)
Q Consensus 394 ~~~~Gidip~~~~vi~-----~~-----~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (464)
++..|+|+|. +.||+ ++ .+-++.+++|++|||||.|- .|.++++....+....+ ...+.++..+
T Consensus 349 TLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~-~~~~~~~~~e 424 (766)
T COG1204 349 TLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYL-AELYIQSEPE 424 (766)
T ss_pred HHhhhcCCcc-eEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHH-HHHhhccCcc
Confidence 9999999995 55555 33 23456789999999999984 44555555344444433 3444444433
No 58
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-36 Score=250.47 Aligned_cols=316 Identities=25% Similarity=0.399 Sum_probs=263.5
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
|.++ -|+|++++++-+.||..|+..|.++++..+- |.++++++.+|.|||.++.++.++.+.... +.-.++++|
T Consensus 44 frdf-llkpellraivdcgfehpsevqhecipqail----gmdvlcqaksgmgktavfvl~tlqqiepv~-g~vsvlvmc 117 (387)
T KOG0329|consen 44 FRDF-LLKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIEPVD-GQVSVLVMC 117 (387)
T ss_pred hhhh-hcCHHHHHHHHhccCCCchHhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcCCCC-CeEEEEEEe
Confidence 3343 3999999999999999999999999776654 999999999999999999999999887643 345699999
Q ss_pred ccHHHHHHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhh
Q 012427 109 PTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l 187 (464)
+|++|+-|+.++..++.+.+ ++++..++|+..+.+....+ .+-++|+|+||++++.+.
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~l---------------------k~~PhivVgTPGrilALv 176 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELL---------------------KNCPHIVVGTPGRILALV 176 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHH---------------------hCCCeEEEcCcHHHHHHH
Confidence 99999999999999887776 58999999998876653332 234699999999999988
Q ss_pred hcCCCcCCCCccEEEEehhhHhhhH-hhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCc
Q 012427 188 NATRGFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (464)
Q Consensus 188 ~~~~~~~~~~~~~iIvDE~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
+.. .+++.++...|+|||+.++.+ ..++.+.++.++++...
T Consensus 177 r~k-~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~K------------------------------------- 218 (387)
T KOG0329|consen 177 RNR-SLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEK------------------------------------- 218 (387)
T ss_pred Hhc-cCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccc-------------------------------------
Confidence 764 488999999999999988765 45677888888876543
Q ss_pred eeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHH
Q 012427 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (464)
Q Consensus 267 ~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (464)
|...+|||++..+......++.+|..+-...+....-...++++....+.+|-..+.+++....-+.++||+.|+....
T Consensus 219 -QvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~ 297 (387)
T KOG0329|consen 219 -QVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLS 297 (387)
T ss_pred -eeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhh
Confidence 7889999999999999999999987766666555555667777777777777777777777777779999998875410
Q ss_pred HHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhh
Q 012427 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (464)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~ 426 (464)
| ..+ +++|+.+++|+|+..++.++.|+.|.+..+|.||+|||
T Consensus 298 ----------------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rA 339 (387)
T KOG0329|consen 298 ----------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 339 (387)
T ss_pred ----------------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhh
Confidence 2 123 78999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeeCcccccch
Q 012427 427 ARAGQLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 427 ~R~g~~g~~~~~~~~~~~~~~~ 448 (464)
||.|..|.++.|++..+....+
T Consensus 340 grfGtkglaitfvs~e~da~iL 361 (387)
T KOG0329|consen 340 GRFGTKGLAITFVSDENDAKIL 361 (387)
T ss_pred hccccccceeehhcchhhHHHh
Confidence 9999999999999888776655
No 59
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4e-35 Score=297.70 Aligned_cols=353 Identities=24% Similarity=0.316 Sum_probs=260.3
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
.+..+..++.+.|...|++||.+|++.+.+ |+|+++..|||||||.+|++|+++.+.+.+ ..++|+|.||++|+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~--~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDP--SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCc--CccEEEEechhhhH
Confidence 466678889999999999999999888776 999999999999999999999999999874 34899999999999
Q ss_pred HHHHHHHHHhccccC--ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCC
Q 012427 115 LQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~ 192 (464)
..+.+.++++....+ +.+..+.|+.+...+.. -..+.++|+++||++|...+.+...
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~---------------------~~~~pp~IllTNpdMLh~~llr~~~ 187 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRA---------------------IIRNPPDILLTNPDMLHYLLLRNHD 187 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHH---------------------HHhCCCCEEEeCHHHHHHHhccCcc
Confidence 999999999988887 78888888877555422 2345679999999999885544332
Q ss_pred ---cCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceee
Q 012427 193 ---FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (464)
Q Consensus 193 ---~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
+.++++++||+||+|.. ...++..+..+++.+.... .......+.
T Consensus 188 ~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~-------------------------------~~~~~~~q~ 235 (851)
T COG1205 188 AWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRL-------------------------------RRYGSPLQI 235 (851)
T ss_pred hHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHH-------------------------------hccCCCceE
Confidence 23677999999999943 4455555444444332111 011134589
Q ss_pred EEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeecc---------CCchHHHHHHHHHhh--CCCeEEEE
Q 012427 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE---------SKLKPLYLVALLQSL--GEEKCIVF 338 (464)
Q Consensus 270 i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~l~~~--~~~~~lVf 338 (464)
+..|||+........+. ........... ...+.....+....+ .......+..+.... .+-++|+|
T Consensus 236 i~~SAT~~np~e~~~~l-~~~~f~~~v~~--~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F 312 (851)
T COG1205 236 ICTSATLANPGEFAEEL-FGRDFEVPVDE--DGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVF 312 (851)
T ss_pred EEEeccccChHHHHHHh-cCCcceeeccC--CCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEE
Confidence 99999995554444333 33322221111 122222233332222 112222222332222 46799999
Q ss_pred ecChhhHHHHH----HHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC
Q 012427 339 TSSVESTHRLC----TLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (464)
Q Consensus 339 ~~s~~~~~~l~----~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~ 413 (464)
+.++..++.+. +.+...+ .....+..+++++..++|..+...|++|+..++++|++++-|+|+.+++.||..+.|
T Consensus 313 ~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P 392 (851)
T COG1205 313 FRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYP 392 (851)
T ss_pred EehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCC
Confidence 99999999996 3333333 334578899999999999999999999999999999999999999999999999999
Q ss_pred C-CcchhhhhhhhhhcCCCCccEEEEeeCcccccchh
Q 012427 414 A-YIKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAIG 449 (464)
Q Consensus 414 ~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 449 (464)
. +..+++|+.||+||.++.+..+.+...+..+.+|.
T Consensus 393 ~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~ 429 (851)
T COG1205 393 GVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYL 429 (851)
T ss_pred CchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhh
Confidence 9 89999999999999998888887777666666553
No 60
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=8.8e-35 Score=287.21 Aligned_cols=319 Identities=14% Similarity=0.101 Sum_probs=219.6
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHh---------HHHHHHHHHh--hccCCccEEEEcccHHHHHHH
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY---------ALPIVQTLSN--RAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~---------~~~~l~~~~~--~~~~~~~~lil~P~~~L~~q~ 117 (464)
..+++.|.++.+.+++.+..+++++++|+||+|||.+. +++.+..+.. ......++++++||++|+.|+
T Consensus 159 ~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi 238 (675)
T PHA02653 159 IPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLH 238 (675)
T ss_pred ccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHH
Confidence 36888888888888888888999999999999999873 2233333321 112344799999999999999
Q ss_pred HHHHHHhccc---cCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcC
Q 012427 118 KDVFAAIAPA---VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (464)
Q Consensus 118 ~~~~~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~ 194 (464)
...+.+.... .+.++...+|+...... ....+..+++|+|+.... ..
T Consensus 239 ~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~----------------------~t~~k~~~Ilv~T~~L~l--------~~ 288 (675)
T PHA02653 239 SITLLKSLGFDEIDGSPISLKYGSIPDELI----------------------NTNPKPYGLVFSTHKLTL--------NK 288 (675)
T ss_pred HHHHHHHhCccccCCceEEEEECCcchHHh----------------------hcccCCCCEEEEeCcccc--------cc
Confidence 9998775443 35778888888752100 011124589999965211 23
Q ss_pred CCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeee
Q 012427 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 274 (464)
++++++||+||||.+...+ +.+..++..... ...+.++|||
T Consensus 289 L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~-------------------------------------~~rq~ILmSA 329 (675)
T PHA02653 289 LFDYGTVIIDEVHEHDQIG--DIIIAVARKHID-------------------------------------KIRSLFLMTA 329 (675)
T ss_pred cccCCEEEccccccCccch--hHHHHHHHHhhh-------------------------------------hcCEEEEEcc
Confidence 6779999999999874433 223222221110 1127899999
Q ss_pred eeecCccchhcccccCCeeeecCCccccCccccccceeecc----------CCchHHHHHHHHHh--hCCCeEEEEecCh
Q 012427 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE----------SKLKPLYLVALLQS--LGEEKCIVFTSSV 342 (464)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~l~~--~~~~~~lVf~~s~ 342 (464)
|++.....+ ..++.++..+..... ....++.++.... ...+...+..+... ..++.+|||++++
T Consensus 330 Tl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~ 405 (675)
T PHA02653 330 TLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASV 405 (675)
T ss_pred CCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcH
Confidence 997666555 345555555543321 1122233222111 11121222222222 2356899999999
Q ss_pred hhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHH-hcCCeeEEEEcccccccCCCCCCCeEEEec---CCC----
Q 012427 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF-REGKIQVLVSSDAMTRGMDVEGVNNVVNYD---KPA---- 414 (464)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~iLi~t~~~~~Gidip~~~~vi~~~---~~~---- 414 (464)
.+++.+++.|++.. .++.+..+||+|+.. ++.+++| ++|+.+|||||+++++|+|+|++++||.++ .|.
T Consensus 406 ~ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g 482 (675)
T PHA02653 406 SQCEEYKKYLEKRL-PIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGG 482 (675)
T ss_pred HHHHHHHHHHHhhc-CCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccC
Confidence 99999999998752 237899999999874 4667777 689999999999999999999999999998 443
Q ss_pred -----CcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012427 415 -----YIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 415 -----s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
|..++.||+||+||. +.|.|+.+++.++.
T Consensus 483 ~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 483 KEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred cccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 777899999999999 79999999988764
No 61
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=279.09 Aligned_cols=363 Identities=22% Similarity=0.226 Sum_probs=219.3
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 47 ~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
..-.+|+||.+..+..+ ++|+++++|||+|||++++..++..+...+ ..+++|++|++.|+.|+...+..++.
T Consensus 59 ~~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p--~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRP--KGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred CcccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCC--cceEEEeeCCchHHHHHHHHHhhccC
Confidence 34589999988744332 899999999999999999999999998764 36899999999999998877777655
Q ss_pred ccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehh
Q 012427 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (464)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~ 206 (464)
. ..+....|+........ .+....+|+|+||+.+.+.+.......++.|.++|||||
T Consensus 132 ~--~~~T~~l~~~~~~~~r~---------------------~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~ 188 (746)
T KOG0354|consen 132 P--YSVTGQLGDTVPRSNRG---------------------EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDEC 188 (746)
T ss_pred c--ccceeeccCccCCCchh---------------------hhhcccceEEeChHhhhhhcccccccccceEEEEEEccc
Confidence 3 45555555543222211 234566999999999999888765445788999999999
Q ss_pred hHhhhHhhhhhHH-----------HHHHhccccccccc------cccccccccccccchhhhccccccccCC--------
Q 012427 207 DRLLREAYQAWLP-----------TVLQLTRSDNENRF------SDASTFLPSAFGSLKTIRRCGVERGFKD-------- 261 (464)
Q Consensus 207 H~~~~~~~~~~~~-----------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 261 (464)
|+......+..+. +++++++++...-. ......+...... .....+...+....
T Consensus 189 Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~s-si~~~y~~lr~~~~i~v~~~~~ 267 (746)
T KOG0354|consen 189 HRTSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTES-SIKSNYEELREHVQIPVDLSLC 267 (746)
T ss_pred ccccccccHHHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhh-hhhhhHHHHhccCcccCcHHHh
Confidence 9876554443333 23333333321100 0000000000000 00000000000000
Q ss_pred ----------------------CCC-------Ccee-eEEeeeeeecC---ccc--hhccc---------ccCCee----
Q 012427 262 ----------------------KPY-------PRLV-KMVLSATLTQD---PNK--LAQLD---------LHHPLF---- 293 (464)
Q Consensus 262 ----------------------~~~-------~~~~-~i~~sat~~~~---~~~--~~~~~---------~~~~~~---- 293 (464)
... ...+ .+...-...++ ... +.... ..+-+.
T Consensus 268 ~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~ 347 (746)
T KOG0354|consen 268 ERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDA 347 (746)
T ss_pred hhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHH
Confidence 000 0000 00000000000 000 00000 000000
Q ss_pred --e-ecCCccccC---------ccc----------cccceeec-cCCchHHHHHHHHHh----hCCCeEEEEecChhhHH
Q 012427 294 --L-TTGETRYKL---------PER----------LESYKLIC-ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTH 346 (464)
Q Consensus 294 --~-~~~~~~~~~---------~~~----------~~~~~~~~-~~~~~~~~l~~~l~~----~~~~~~lVf~~s~~~~~ 346 (464)
. .....+... ... +.++.... ...+++..+...+.. .+..++|||+.+++.|.
T Consensus 348 l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~ 427 (746)
T KOG0354|consen 348 LDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESAL 427 (746)
T ss_pred HhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHH
Confidence 0 000000000 000 00001111 134555555555543 35568999999999999
Q ss_pred HHHHHHhhcCccceeEeecc--------CcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcch
Q 012427 347 RLCTLLNHFGELRIKIKEYS--------GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (464)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~--------~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~ 418 (464)
.+.+.|.+....+++...+- .+|+..++.++++.|+.|+.++||||++++||+|+++|+.||.|+...|+..
T Consensus 428 ~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIr 507 (746)
T KOG0354|consen 428 ALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIR 507 (746)
T ss_pred HHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHH
Confidence 99999985333334443333 3899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCccEEEEeeCc
Q 012427 419 YIHRAGRTARAGQLGRCFTLLHKD 442 (464)
Q Consensus 419 ~~Q~~GR~~R~g~~g~~~~~~~~~ 442 (464)
.+||.|| ||. ++|.|++++.+.
T Consensus 508 mIQrrGR-gRa-~ns~~vll~t~~ 529 (746)
T KOG0354|consen 508 MVQRRGR-GRA-RNSKCVLLTTGS 529 (746)
T ss_pred HHHHhcc-ccc-cCCeEEEEEcch
Confidence 9999999 998 789999888743
No 62
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.6e-34 Score=290.69 Aligned_cols=305 Identities=19% Similarity=0.242 Sum_probs=218.5
Q ss_pred hhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH-hccccCceEEEeecCCc
Q 012427 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSS 140 (464)
Q Consensus 62 i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~v~~~~g~~~ 140 (464)
+++.+.++++++++++||||||.++.+++++... .+.+++++.|++.++.|+++.+.+ +....|..|+...+...
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~ 85 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN 85 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc
Confidence 4444556899999999999999999999887653 234799999999999999998864 44444566665554432
Q ss_pred hhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH-hhhHhhhh-hH
Q 012427 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQA-WL 218 (464)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~-~~~~~~~~-~~ 218 (464)
. ...+.+|+|+|++.|.+.+... ..++++++||+||+|. .++..+.- .+
T Consensus 86 ~---------------------------~s~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~Dl~L~ll 136 (819)
T TIGR01970 86 K---------------------------VSRRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDADLGLALA 136 (819)
T ss_pred c---------------------------cCCCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccchHHHHH
Confidence 1 2234589999999999988752 5688999999999994 55443321 22
Q ss_pred HHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCC
Q 012427 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~ 298 (464)
..+...++ +..++++||||+.... + ..++.++..+....
T Consensus 137 ~~i~~~lr--------------------------------------~dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~g 175 (819)
T TIGR01970 137 LDVQSSLR--------------------------------------EDLKILAMSATLDGER--L-SSLLPDAPVVESEG 175 (819)
T ss_pred HHHHHhcC--------------------------------------CCceEEEEeCCCCHHH--H-HHHcCCCcEEEecC
Confidence 23332222 2348999999986432 2 22333333332222
Q ss_pred ccccCccccccceeeccCCchH-----HHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHH
Q 012427 299 TRYKLPERLESYKLICESKLKP-----LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (464)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 373 (464)
..+ .++.++.......+. ..+..++.. ..+++|||+++..+++.+++.|++....++.+..+||+|+..+
T Consensus 176 r~~----pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~e 250 (819)
T TIGR01970 176 RSF----PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAA 250 (819)
T ss_pred cce----eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHH
Confidence 111 233333333222221 122233322 4678999999999999999999863223588999999999999
Q ss_pred HHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCC------------------cchhhhhhhhhhcCCCCccE
Q 012427 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY------------------IKTYIHRAGRTARAGQLGRC 435 (464)
Q Consensus 374 r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s------------------~~~~~Q~~GR~~R~g~~g~~ 435 (464)
|.++++.|.+|+.+|||||+++++|+|+|++++||.++.+.. ..++.||.||+||. +.|.|
T Consensus 251 q~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~c 329 (819)
T TIGR01970 251 QDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVC 329 (819)
T ss_pred HHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEE
Confidence 999999999999999999999999999999999999997642 33589999999999 79999
Q ss_pred EEEeeCccccc
Q 012427 436 FTLLHKDEKKG 446 (464)
Q Consensus 436 ~~~~~~~~~~~ 446 (464)
+.+++.++...
T Consensus 330 yrL~t~~~~~~ 340 (819)
T TIGR01970 330 YRLWSEEQHQR 340 (819)
T ss_pred EEeCCHHHHHh
Confidence 99998876543
No 63
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.4e-33 Score=292.73 Aligned_cols=326 Identities=23% Similarity=0.313 Sum_probs=227.4
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
-++|+||..+...++. +++++++|||+|||+++++++...+.. .+.++|||+|+++|+.|+.+.+++++...
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~~---~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 85 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLHK---KGGKVLILAPTKPLVEQHAEFFRKFLNIP 85 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 4789999998776654 489999999999999998888877642 34589999999999999999999886544
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012427 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
+.++..+.|+.+.... ..+..+.+|+|+||+.+.+.+.... +.+.++++||+||||+
T Consensus 86 ~~~v~~~~g~~~~~~r----------------------~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~~~liVvDEaH~ 142 (773)
T PRK13766 86 EEKIVVFTGEVSPEKR----------------------AELWEKAKVIVATPQVIENDLIAGR-ISLEDVSLLIFDEAHR 142 (773)
T ss_pred CceEEEEeCCCCHHHH----------------------HHHHhCCCEEEECHHHHHHHHHcCC-CChhhCcEEEEECCcc
Confidence 4578888887664433 2233456999999999988765533 6678899999999999
Q ss_pred hhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhc---
Q 012427 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ--- 285 (464)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~--- 285 (464)
+........+...+.... .....+++|||+.........
T Consensus 143 ~~~~~~~~~i~~~~~~~~--------------------------------------~~~~il~lTaTP~~~~~~i~~~~~ 184 (773)
T PRK13766 143 AVGNYAYVYIAERYHEDA--------------------------------------KNPLVLGLTASPGSDEEKIKEVCE 184 (773)
T ss_pred ccccccHHHHHHHHHhcC--------------------------------------CCCEEEEEEcCCCCCHHHHHHHHH
Confidence 865433332222221111 111355566665322111000
Q ss_pred -cc-----------------ccCC----------------------------------eee-ecC----Ccc--------
Q 012427 286 -LD-----------------LHHP----------------------------------LFL-TTG----ETR-------- 300 (464)
Q Consensus 286 -~~-----------------~~~~----------------------------------~~~-~~~----~~~-------- 300 (464)
.+ +..+ ... ... ...
T Consensus 185 ~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (773)
T PRK13766 185 NLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKL 264 (773)
T ss_pred hCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHH
Confidence 00 0000 000 000 000
Q ss_pred --ccCcc---------------------------------------------------------------ccccceeecc
Q 012427 301 --YKLPE---------------------------------------------------------------RLESYKLICE 315 (464)
Q Consensus 301 --~~~~~---------------------------------------------------------------~~~~~~~~~~ 315 (464)
...+. .+........
T Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 344 (773)
T PRK13766 265 QQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDI 344 (773)
T ss_pred HHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhccc
Confidence 00000 0000000112
Q ss_pred CCchHHHHHHHHHh----hCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCc--------ccHHHHHHHHHHHhc
Q 012427 316 SKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL--------QRQSVRSKTLKAFRE 383 (464)
Q Consensus 316 ~~~~~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~ 383 (464)
...|...+.++++. ..+.++||||++...|..+++.|...+ +.+..+||. |+..+|.+++++|+.
T Consensus 345 ~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~ 421 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG---IKAVRFVGQASKDGDKGMSQKEQIEILDKFRA 421 (773)
T ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCC---CceEEEEccccccccCCCCHHHHHHHHHHHHc
Confidence 33455566666654 467799999999999999999997665 666677765 899999999999999
Q ss_pred CCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccccc
Q 012427 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKGA 447 (464)
Q Consensus 384 ~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 447 (464)
|+.++||+|+++++|+|+|++++||+|+++++...|+||+||+||.| .|.+++++..++.++.
T Consensus 422 g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ee~ 484 (773)
T PRK13766 422 GEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTRDEA 484 (773)
T ss_pred CCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCChHHH
Confidence 99999999999999999999999999999999999999999999986 5888888887776653
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.2e-34 Score=269.61 Aligned_cols=315 Identities=18% Similarity=0.178 Sum_probs=203.1
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhc
Q 012427 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 150 (464)
++++.+|||+|||.+++++++..+... ...++++++|+++|+.|+++.+..++. ..++.+++....... .....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~--~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~-~~~~~ 74 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ--KADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRI-KEMGD 74 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHH-hccCC
Confidence 478999999999999999999886543 345899999999999999999999754 245555554332110 00000
Q ss_pred cccccccccCCchhHHHhh------hcCCcEEEeCchHHHHhhhcC-CC--cCC--CCccEEEEehhhHhhhHhhhhhHH
Q 012427 151 RPKLEAGICYDPEDVLQEL------QSAVDILVATPGRLMDHINAT-RG--FTL--EHLCYLVVDETDRLLREAYQAWLP 219 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~------~~~~~IiI~T~~~l~~~l~~~-~~--~~~--~~~~~iIvDE~H~~~~~~~~~~~~ 219 (464)
. ......+... .-..+|+|+||+.+...+... .. +.+ -..+++|+||+|.+...++.. +.
T Consensus 75 ~--------~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 75 S--------EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred c--------hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 0 0000111111 123579999999998876652 11 111 123789999999987765443 33
Q ss_pred HHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCc
Q 012427 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 299 (464)
.++..+.. ...+.+++|||++.............+........
T Consensus 146 ~~l~~l~~-------------------------------------~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~ 188 (358)
T TIGR01587 146 AVLEVLKD-------------------------------------NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK 188 (358)
T ss_pred HHHHHHHH-------------------------------------cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc
Confidence 33333221 12378999999975443333222111111000000
Q ss_pred cccCccccccce-e-eccCCchHHHHHHHHHhh-CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHH
Q 012427 300 RYKLPERLESYK-L-ICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376 (464)
Q Consensus 300 ~~~~~~~~~~~~-~-~~~~~~~~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~ 376 (464)
.......+.. . ......+...+..+++.. .++++||||++++.++.+++.|++.+ .+..+..+||+++..+|.+
T Consensus 189 --~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~-~~~~~~~~h~~~~~~~r~~ 265 (358)
T TIGR01587 189 --EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENA-PEEEIMLLHSRFTEKDRAK 265 (358)
T ss_pred --cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhc-CCCeEEEEECCCCHHHHHH
Confidence 0000011111 1 112234455555555543 56799999999999999999998764 2236889999999999876
Q ss_pred ----HHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCc----cEEEEeeCcc
Q 012427 377 ----TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG----RCFTLLHKDE 443 (464)
Q Consensus 377 ----~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g----~~~~~~~~~~ 443 (464)
+++.|++++..+||||+++++|+|++ ++.+|.+..| ..+|+||+||+||.|+.+ .+++|....+
T Consensus 266 ~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 266 KEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 48899999999999999999999996 7788877655 789999999999987543 5565555443
No 65
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.6e-34 Score=289.64 Aligned_cols=306 Identities=21% Similarity=0.240 Sum_probs=217.9
Q ss_pred hhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH-hccccCceEEEeecCC
Q 012427 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQS 139 (464)
Q Consensus 61 ~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~v~~~~g~~ 139 (464)
.+++.+.+++++++.++||||||.++.+++++.... ..+++++.|++.++.|+++.+.+ +....|..++...++.
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~ 87 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc
Confidence 344455568999999999999999999888875322 23799999999999999999864 4444566777766654
Q ss_pred chhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh-hhHhh-hhh
Q 012427 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAY-QAW 217 (464)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~-~~~~~-~~~ 217 (464)
+. .....+|+|+|++.|.+.+.. ...++++++||+||+|.. ++..+ -..
T Consensus 88 ~~---------------------------~~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~l 138 (812)
T PRK11664 88 SK---------------------------VGPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALAL 138 (812)
T ss_pred cc---------------------------cCCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHH
Confidence 31 122347999999999998775 256889999999999962 22211 112
Q ss_pred HHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecC
Q 012427 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (464)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 297 (464)
+..+...++ +..+.++||||+... .+ ..++.++..+...
T Consensus 139 l~~i~~~lr--------------------------------------~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~ 177 (812)
T PRK11664 139 LLDVQQGLR--------------------------------------DDLKLLIMSATLDND--RL-QQLLPDAPVIVSE 177 (812)
T ss_pred HHHHHHhCC--------------------------------------ccceEEEEecCCCHH--HH-HHhcCCCCEEEec
Confidence 222222221 334899999999643 22 2233333333222
Q ss_pred CccccCccccccceeeccCCchHH-----HHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHH
Q 012427 298 ETRYKLPERLESYKLICESKLKPL-----YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 372 (464)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 372 (464)
... ..++.++.......+.. .+..++.. ..+.+|||+++..+++.+++.|++....++.+..+||+|+..
T Consensus 178 gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~ 252 (812)
T PRK11664 178 GRS----FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLA 252 (812)
T ss_pred Ccc----ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHH
Confidence 211 12333333233222222 22333322 468899999999999999999987322347899999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCC------------------CcchhhhhhhhhhcCCCCcc
Q 012427 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------------YIKTYIHRAGRTARAGQLGR 434 (464)
Q Consensus 373 ~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~------------------s~~~~~Q~~GR~~R~g~~g~ 434 (464)
+|..+++.|.+|+.+|||||+++++|+|+|++++||.++.+. |..++.||.||+||. ..|.
T Consensus 253 eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~ 331 (812)
T PRK11664 253 EQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGI 331 (812)
T ss_pred HHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcE
Confidence 999999999999999999999999999999999999988664 234799999999998 6999
Q ss_pred EEEEeeCccccc
Q 012427 435 CFTLLHKDEKKG 446 (464)
Q Consensus 435 ~~~~~~~~~~~~ 446 (464)
|+.++++.+...
T Consensus 332 cyrL~t~~~~~~ 343 (812)
T PRK11664 332 CLHLYSKEQAER 343 (812)
T ss_pred EEEecCHHHHhh
Confidence 999998876544
No 66
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.6e-33 Score=290.01 Aligned_cols=333 Identities=21% Similarity=0.287 Sum_probs=226.6
Q ss_pred HHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH
Q 012427 40 KVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (464)
Q Consensus 40 ~~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~ 118 (464)
.+.+++ +|+ .|+++|..+++.++. |+++++.+|||+|||.. .+++...+.. .+.+++||+||++|+.|++
T Consensus 70 ~~~f~~~~G~-~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f-~l~~~~~l~~---~g~~alIL~PTreLa~Qi~ 140 (1176)
T PRK09401 70 EKFFKKKTGS-KPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTF-GLVMSLYLAK---KGKKSYIIFPTRLLVEQVV 140 (1176)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHH-HHHHHHHHHh---cCCeEEEEeccHHHHHHHH
Confidence 334544 577 899999999887775 99999999999999964 4444444432 3568999999999999999
Q ss_pred HHHHHhccccCceEEEeecCCchh-HHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeCchHHHHhhhcCCCcCCC
Q 012427 119 DVFAAIAPAVGLSVGLAVGQSSIA-DEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLE 196 (464)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T~~~l~~~l~~~~~~~~~ 196 (464)
+.++.++...++.+..+.|+.... .+. .+....+. ..++|+|+||+.|.+.+.. +...
T Consensus 141 ~~l~~l~~~~~~~~~~~~g~~~~~~~ek-----------------~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~ 200 (1176)
T PRK09401 141 EKLEKFGEKVGCGVKILYYHSSLKKKEK-----------------EEFLERLKEGDFDILVTTSQFLSKNFDE---LPKK 200 (1176)
T ss_pred HHHHHHhhhcCceEEEEEccCCcchhHH-----------------HHHHHHHhcCCCCEEEECHHHHHHHHHh---cccc
Confidence 999999988888888887775431 111 11222333 3489999999999987763 4556
Q ss_pred CccEEEEehhhHhhh-----------Hhhh-hhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCC
Q 012427 197 HLCYLVVDETDRLLR-----------EAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (464)
Q Consensus 197 ~~~~iIvDE~H~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
.++++|+||||+++. .+|. +.+..++..++..... ......+..... .+.....
T Consensus 201 ~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~---------~~~~~~i~~l~~-----~i~~~~~ 266 (1176)
T PRK09401 201 KFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY---------EEIYEKIRELEE-----KIAELKD 266 (1176)
T ss_pred ccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc---------chhhhHHHHHHH-----hhhhccc
Confidence 799999999999986 3443 4566666655431110 000000000000 0000000
Q ss_pred CceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhh
Q 012427 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344 (464)
Q Consensus 265 ~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~ 344 (464)
...+.+++|||..+..... ..+..+..+..+.... ....+.+.+.... .+...+..++... +.++||||++...
T Consensus 267 ~~~q~ilfSAT~~~~~~~~--~l~~~ll~~~v~~~~~-~~rnI~~~yi~~~--~k~~~L~~ll~~l-~~~~LIFv~t~~~ 340 (1176)
T PRK09401 267 KKGVLVVSSATGRPRGNRV--KLFRELLGFEVGSPVF-YLRNIVDSYIVDE--DSVEKLVELVKRL-GDGGLIFVPSDKG 340 (1176)
T ss_pred CCceEEEEeCCCCccchHH--HHhhccceEEecCccc-ccCCceEEEEEcc--cHHHHHHHHHHhc-CCCEEEEEecccC
Confidence 1448899999986532211 1112222233322221 2233444443333 4566677777655 4589999999777
Q ss_pred ---HHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEE----cccccccCCCCC-CCeEEEecCCC--
Q 012427 345 ---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA-- 414 (464)
Q Consensus 345 ---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~----t~~~~~Gidip~-~~~vi~~~~~~-- 414 (464)
++.+++.|+..+ +++..+||+| .+.+++|++|+.+|||| |+.+++|+|+|+ +++||+++.|.
T Consensus 341 ~~~ae~l~~~L~~~g---i~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~ 412 (1176)
T PRK09401 341 KEYAEELAEYLEDLG---INAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFK 412 (1176)
T ss_pred hHHHHHHHHHHHHCC---CcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEE
Confidence 999999999877 9999999999 23359999999999999 689999999999 89999999997
Q ss_pred ----CcchhhhhhhhhhcC
Q 012427 415 ----YIKTYIHRAGRTARA 429 (464)
Q Consensus 415 ----s~~~~~Q~~GR~~R~ 429 (464)
....+.+++||..+.
T Consensus 413 ~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 413 FSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EeccccccCHHHHHHHHhh
Confidence 456789999998643
No 67
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.2e-33 Score=271.71 Aligned_cols=356 Identities=21% Similarity=0.246 Sum_probs=241.2
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
.|. .|++.|..++..++. |+ ++.+.||+|||+++++|++..... +..++|++||..||.|.++++.++.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~----G~--Iae~~TGeGKTla~~lp~~~~al~----G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLS----GR--LAEMQTGEGKTLTATLPAGTAALA----GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hCC-CCChHHHHHHHHHhC----CC--eeeeeCCCCcHHHHHHHHHHHhhc----CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 464 799999999887765 66 999999999999999999987664 3479999999999999999999999
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HHhhhcC--------------
Q 012427 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-------------- 190 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~~l~~~-------------- 190 (464)
..+|+++++++|+.+...+ ....+++|+++|...| .+.|...
T Consensus 169 ~~lGlsv~~i~gg~~~~~r-----------------------~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~ 225 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDER-----------------------RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLAL 225 (656)
T ss_pred hhcCCEEEEEeCCCCHHHH-----------------------HHHcCCCEEEECCCchhhhhccccccccccccchhhhh
Confidence 9999999999998754322 2335679999998766 2333221
Q ss_pred ----------CCcCCCCccEEEEehhhHhhh------------------HhhhhhHHHHHHhcccccccccc--------
Q 012427 191 ----------RGFTLEHLCYLVVDETDRLLR------------------EAYQAWLPTVLQLTRSDNENRFS-------- 234 (464)
Q Consensus 191 ----------~~~~~~~~~~iIvDE~H~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~-------- 234 (464)
.......+.+.||||+|.++= ..+..+...+...+........+
T Consensus 226 ~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~l 305 (656)
T PRK12898 226 ESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIEL 305 (656)
T ss_pred hhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEE
Confidence 112245688999999997521 11222333333322221000000
Q ss_pred ---------cccccccccc--------------ccchhhhc-----------------cccc---ccc-----------C
Q 012427 235 ---------DASTFLPSAF--------------GSLKTIRR-----------------CGVE---RGF-----------K 260 (464)
Q Consensus 235 ---------~~~~~~~~~~--------------~~~~~~~~-----------------~~~~---~~~-----------~ 260 (464)
.....++..+ .+...+.+ +|.. +.+ +
T Consensus 306 t~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE 385 (656)
T PRK12898 306 TEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKE 385 (656)
T ss_pred cHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhc
Confidence 0000000000 00000000 0000 000 0
Q ss_pred CCC-----------------CCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHH
Q 012427 261 DKP-----------------YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323 (464)
Q Consensus 261 ~~~-----------------~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 323 (464)
... ....+..+||+|......++...+..+++.++..... ... .....+.+....|...+
T Consensus 386 ~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~-~~~~~v~~t~~~K~~aL 462 (656)
T PRK12898 386 GCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRR-HLPDEVFLTAAAKWAAV 462 (656)
T ss_pred CCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cce-ecCCEEEeCHHHHHHHH
Confidence 000 0011346889998766666666666666666554432 111 22334455666788888
Q ss_pred HHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCC
Q 012427 324 VALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401 (464)
Q Consensus 324 ~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidi 401 (464)
...+... .++++||||++++.++.+++.|.+.+ +++..+||++... +..+..+..+...|+|||+++++|+||
T Consensus 463 ~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g---i~~~~Lhg~~~~r--E~~ii~~ag~~g~VlVATdmAgRGtDI 537 (656)
T PRK12898 463 AARVRELHAQGRPVLVGTRSVAASERLSALLREAG---LPHQVLNAKQDAE--EAAIVARAGQRGRITVATNMAGRGTDI 537 (656)
T ss_pred HHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CCEEEeeCCcHHH--HHHHHHHcCCCCcEEEEccchhcccCc
Confidence 8888664 36789999999999999999999877 8999999997654 444555555556799999999999999
Q ss_pred C---CCC-----eEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcc
Q 012427 402 E---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (464)
Q Consensus 402 p---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 443 (464)
+ ++. +||.++.|.|...|.|++||+||.|+.|.++.|++.+|
T Consensus 538 ~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 538 KLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred CCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9 565 99999999999999999999999999999999998654
No 68
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=274.23 Aligned_cols=353 Identities=21% Similarity=0.239 Sum_probs=251.8
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhh------ccCCccEEEEcccHHHHHHHHH
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQVKD 119 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~------~~~~~~~lil~P~~~L~~q~~~ 119 (464)
++|.+++.+|.++++.+++ .+.|+|++||||+|||.++++.++..+... ..++.|+++++|+++||.++.+
T Consensus 106 f~f~~fN~iQS~vFp~aY~---SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYK---SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhc---CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 5788999999999998886 779999999999999999999999998862 1356789999999999999999
Q ss_pred HHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCC---CcCCC
Q 012427 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR---GFTLE 196 (464)
Q Consensus 120 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~---~~~~~ 196 (464)
.+.+-+...|+.|..+.|+......- -..++|+|+||+++ +.+++.. .-.++
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te------------------------i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~ 237 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTE------------------------IADTQIIVTTPEKW-DVVTRKSVGDSALFS 237 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHH------------------------HHhcCEEEecccce-eeeeeeeccchhhhh
Confidence 98887777899999999998765431 23469999999996 3333322 12367
Q ss_pred CccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeee
Q 012427 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (464)
Q Consensus 197 ~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~ 276 (464)
.++++|+||+| ++.+..++.++.+...+..... ..-...+++.+|||+
T Consensus 238 ~V~LviIDEVH-lLhd~RGpvlEtiVaRtlr~ve-------------------------------ssqs~IRivgLSATl 285 (1230)
T KOG0952|consen 238 LVRLVIIDEVH-LLHDDRGPVLETIVARTLRLVE-------------------------------SSQSMIRIVGLSATL 285 (1230)
T ss_pred heeeEEeeeeh-hhcCcccchHHHHHHHHHHHHH-------------------------------hhhhheEEEEeeccC
Confidence 78999999999 5567778888888776542110 001344899999999
Q ss_pred ecCccchhcccccCCeeeecCCccccCccccccceeeccCC--------chHHHHHHHHHhh-CCCeEEEEecChhhHHH
Q 012427 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK--------LKPLYLVALLQSL-GEEKCIVFTSSVESTHR 347 (464)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~-~~~~~lVf~~s~~~~~~ 347 (464)
++..+-...+..+.+..+-. ......|..+.....-.+.. .......++++.. .+..++|||.++..+.+
T Consensus 286 PN~eDvA~fL~vn~~~glfs-Fd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~ 364 (1230)
T KOG0952|consen 286 PNYEDVARFLRVNPYAGLFS-FDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIR 364 (1230)
T ss_pred CCHHHHHHHhcCCCccceee-ecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHH
Confidence 77666555555442211111 11111222222222111111 1111223333332 46789999999999999
Q ss_pred HHHHHhhcCc--------------------cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeE
Q 012427 348 LCTLLNHFGE--------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (464)
Q Consensus 348 l~~~l~~~~~--------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~v 407 (464)
.++.|.+.+. ........|+||...+|.-+.+.|..|..++|+||..+.+|+|+|. .+|
T Consensus 365 tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA-~aV 443 (1230)
T KOG0952|consen 365 TAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA-YAV 443 (1230)
T ss_pred HHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcc-eEE
Confidence 9998876311 0124677899999999999999999999999999999999999995 567
Q ss_pred EEecCC-----------CCcchhhhhhhhhhcCC--CCccEEEEeeCcccccchhhccccccccccc
Q 012427 408 VNYDKP-----------AYIKTYIHRAGRTARAG--QLGRCFTLLHKDEKKGAIGRSLFHQSRVLGV 461 (464)
Q Consensus 408 i~~~~~-----------~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (464)
|+-+.+ -..-+.+|.+|||||.. ..|.+++ +...+.-..|...+.++.++||+
T Consensus 444 iIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giI-iTt~dkl~~Y~sLl~~~~piES~ 509 (1230)
T KOG0952|consen 444 IIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGII-ITTRDKLDHYESLLTGQNPIESQ 509 (1230)
T ss_pred EecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEE-EecccHHHHHHHHHcCCChhHHH
Confidence 765543 12446799999999975 4566664 44555566666888888888875
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=7.6e-33 Score=272.14 Aligned_cols=361 Identities=17% Similarity=0.184 Sum_probs=227.2
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.++|+|.+++..+.. ++..++.++||+|||+++++|++.....+ ..++|+||++.|+.|+++++..+...+|
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~l~aL~g----~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLYLNALTG----KGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHHHHhhcC----CceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 356666666554432 34479999999999999999987666543 3699999999999999999999999999
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HHhhhc-----CCCcCCCCccEEEE
Q 012427 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINA-----TRGFTLEHLCYLVV 203 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~~l~~-----~~~~~~~~~~~iIv 203 (464)
+.++..+++....... .+. .....+++|+++||+.| .+.+.. .....+..+.++|+
T Consensus 140 Lsv~~~~~~s~~~~~~-----------------~~~-rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IV 201 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYD-----------------ANE-KRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIV 201 (762)
T ss_pred CcEEEEECCCCccccC-----------------HHH-HHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEE
Confidence 9998877753211100 000 11224689999999999 444422 12244678999999
Q ss_pred ehhhHhhhH----------------hhhhhHHHHHHhcccccccc---------cccc-----ccc--ccccc-------
Q 012427 204 DETDRLLRE----------------AYQAWLPTVLQLTRSDNENR---------FSDA-----STF--LPSAF------- 244 (464)
Q Consensus 204 DE~H~~~~~----------------~~~~~~~~~~~~~~~~~~~~---------~~~~-----~~~--~~~~~------- 244 (464)
||||.++-+ ........+...+....... +.+. ... +...+
T Consensus 202 DEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~ 281 (762)
T TIGR03714 202 DEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFEL 281 (762)
T ss_pred ecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHH
Confidence 999987422 12222223333222210000 0000 000 00000
Q ss_pred --------ccchhhhcc-------c---cccccCC---------------------CC-----------------CCcee
Q 012427 245 --------GSLKTIRRC-------G---VERGFKD---------------------KP-----------------YPRLV 268 (464)
Q Consensus 245 --------~~~~~~~~~-------~---~~~~~~~---------------------~~-----------------~~~~~ 268 (464)
.+...+.+. + +...+.. .. ....+
T Consensus 282 ~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~k 361 (762)
T TIGR03714 282 VRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNK 361 (762)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCch
Confidence 000000000 0 0000000 00 00123
Q ss_pred eEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCCeEEEEecChhhHH
Q 012427 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTH 346 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~s~~~~~ 346 (464)
..+||+|......++...+-.+.+.++... +..... ....+......|...+...+.. ..+.++||||+|++.++
T Consensus 362 l~GmTGTa~~~~~Ef~~iY~l~v~~IPt~k--p~~r~d-~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se 438 (762)
T TIGR03714 362 LSGMTGTGKVAEKEFIETYSLSVVKIPTNK--PIIRID-YPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSE 438 (762)
T ss_pred hcccCCCChhHHHHHHHHhCCCEEEcCCCC--Ceeeee-CCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHH
Confidence 456777754433333332222222222211 111111 1123344556678888777765 46789999999999999
Q ss_pred HHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCC---------CCCeEEEecCCCCcc
Q 012427 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---------GVNNVVNYDKPAYIK 417 (464)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip---------~~~~vi~~~~~~s~~ 417 (464)
.+++.|.+.+ +++..+|+++...++..+.++++.| .|+|||+++++|+|+| ++++|+.++.|....
T Consensus 439 ~ls~~L~~~g---i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri 513 (762)
T TIGR03714 439 IYSELLLREG---IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRV 513 (762)
T ss_pred HHHHHHHHCC---CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHH
Confidence 9999999877 8899999999988887777766665 7999999999999999 888999999987765
Q ss_pred hhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012427 418 TYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 418 ~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
. .|++||+||.|++|.++.|++.++.-
T Consensus 514 d-~qr~GRtGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 514 D-LQLRGRSGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred H-HHhhhcccCCCCceeEEEEEccchhh
Confidence 5 99999999999999999999876543
No 70
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=9.2e-33 Score=294.76 Aligned_cols=344 Identities=18% Similarity=0.224 Sum_probs=230.1
Q ss_pred HHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 012427 38 RLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (464)
Q Consensus 38 ~i~~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q 116 (464)
++.+.+++ +|| +|+++|..++..++. |+++++.+|||+|||+.++++++.... ++.+++||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~~----~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLAL----KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHHh----cCCeEEEEECHHHHHHH
Confidence 35555666 899 699999999888876 999999999999999965554443322 34589999999999999
Q ss_pred HHHHHHHhcccc--CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhc-CCcEEEeCchHHHHhhhcCCCc
Q 012427 117 VKDVFAAIAPAV--GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF 193 (464)
Q Consensus 117 ~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiI~T~~~l~~~l~~~~~~ 193 (464)
+.+.++.++... ++.+..++|+.+...+. ..+..+.. .++|+|+||+.+.+.+... .
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~------------------~~~~~l~~g~~dILV~TPgrL~~~~~~l--~ 197 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKE------------------EFLERIENGDFDILVTTAQFLARNFPEM--K 197 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHH------------------HHHHHHhcCCCCEEEECCchhHHhHHHH--h
Confidence 999999988765 46777888887655442 22333444 3899999999988765542 1
Q ss_pred CCCCccEEEEehhhHhhhH-----------hhhhhHHH-HHHhccccccccccccccccccccccchhhhccccccccCC
Q 012427 194 TLEHLCYLVVDETDRLLRE-----------AYQAWLPT-VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (464)
Q Consensus 194 ~~~~~~~iIvDE~H~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
..+++++|+||||+++.+ +|.+.+.. ++..+........... ...+..... ....
T Consensus 198 -~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~-------~~~~~~l~~-----~~~~ 264 (1638)
T PRK14701 198 -HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDA-------MEKREILNK-----EIEK 264 (1638)
T ss_pred -hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchh-------hhhhhhhhh-----hhhh
Confidence 257899999999999762 44444432 2222110000000000 000000000 0000
Q ss_pred CCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecC
Q 012427 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341 (464)
Q Consensus 262 ~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s 341 (464)
.+...-..+++|||........ ..+..+..+..+...... ..+.+.+.......+ ..+..++... +..+||||++
T Consensus 265 ~~~~~~~ll~~SAT~~~r~~~~--~l~~~~l~f~v~~~~~~l-r~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t 339 (1638)
T PRK14701 265 IGNKIGCLIVASATGKAKGDRV--KLYRELLGFEVGSGRSAL-RNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPI 339 (1638)
T ss_pred cCCCccEEEEEecCCCchhHHH--HHhhcCeEEEecCCCCCC-CCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEec
Confidence 0111113577899986531111 123444445444433222 333444433333323 4566667665 5689999999
Q ss_pred hhh---HHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEc----ccccccCCCCC-CCeEEEecCC
Q 012427 342 VES---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDKP 413 (464)
Q Consensus 342 ~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t----~~~~~Gidip~-~~~vi~~~~~ 413 (464)
.+. |+.+++.|.+.+ +++..+|++ |...+++|++|+.+||||| +.+++|+|+|+ ++.||+++.|
T Consensus 340 ~~~~e~ae~la~~L~~~G---i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~P 411 (1638)
T PRK14701 340 DEGAEKAEEIEKYLLEDG---FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVP 411 (1638)
T ss_pred cccchHHHHHHHHHHHCC---CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCC
Confidence 775 589999999876 999999995 7899999999999999999 47899999998 9999999999
Q ss_pred C---Ccchhhhhh-------------hhhhcCCCCccEE
Q 012427 414 A---YIKTYIHRA-------------GRTARAGQLGRCF 436 (464)
Q Consensus 414 ~---s~~~~~Q~~-------------GR~~R~g~~g~~~ 436 (464)
. |...|.|.. ||++|.|....++
T Consensus 412 k~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 412 KFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred CCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhH
Confidence 8 777666655 9999998776665
No 71
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.4e-32 Score=259.47 Aligned_cols=327 Identities=19% Similarity=0.235 Sum_probs=244.4
Q ss_pred HHHHHHHCCCCccchhhHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 012427 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (464)
Q Consensus 39 i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~--~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q 116 (464)
+.+.+...+| +|+..|++++.+|..-+.+. .+=+++|+.|||||++++++++..+..+ ..+..++||.-||+|
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G----~Q~ALMAPTEILA~Q 326 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG----YQAALMAPTEILAEQ 326 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC----CeeEEeccHHHHHHH
Confidence 4455577899 79999999999999877776 4569999999999999999999888864 379999999999999
Q ss_pred HHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcC-CcEEEeCchHHHHhhhcCCCcCC
Q 012427 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTL 195 (464)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IiI~T~~~l~~~l~~~~~~~~ 195 (464)
.++.+.++++..|++|..+.|..+-..+ ..+...+.++ .+|+|+|..-+.+ ...+
T Consensus 327 H~~~~~~~l~~~~i~V~lLtG~~kgk~r------------------~~~l~~l~~G~~~ivVGTHALiQd------~V~F 382 (677)
T COG1200 327 HYESLRKWLEPLGIRVALLTGSLKGKAR------------------KEILEQLASGEIDIVVGTHALIQD------KVEF 382 (677)
T ss_pred HHHHHHHHhhhcCCeEEEeecccchhHH------------------HHHHHHHhCCCCCEEEEcchhhhc------ceee
Confidence 9999999999999999999998876555 3333445555 8999999655533 2557
Q ss_pred CCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeee
Q 012427 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (464)
Q Consensus 196 ~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat 275 (464)
.++.++|+||-|++.-.. +..+...+.. ....+.||||
T Consensus 383 ~~LgLVIiDEQHRFGV~Q-----R~~L~~KG~~-------------------------------------~Ph~LvMTAT 420 (677)
T COG1200 383 HNLGLVIIDEQHRFGVHQ-----RLALREKGEQ-------------------------------------NPHVLVMTAT 420 (677)
T ss_pred cceeEEEEeccccccHHH-----HHHHHHhCCC-------------------------------------CCcEEEEeCC
Confidence 789999999999984222 2222222110 2367899999
Q ss_pred eecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCCeEEEEecChhhH--------
Q 012427 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVEST-------- 345 (464)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~s~~~~-------- 345 (464)
|-+...........+..++..- +.-...+..+ +-...+...+.+.+.. ..+.++-+.|+-+++.
T Consensus 421 PIPRTLAlt~fgDldvS~IdEl---P~GRkpI~T~---~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a 494 (677)
T COG1200 421 PIPRTLALTAFGDLDVSIIDEL---PPGRKPITTV---VIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAA 494 (677)
T ss_pred CchHHHHHHHhccccchhhccC---CCCCCceEEE---EeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhH
Confidence 9777666655443333222211 1111222222 2233334444444432 2577899999877654
Q ss_pred HHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC-CCcchhhhhhh
Q 012427 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAG 424 (464)
Q Consensus 346 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~-~s~~~~~Q~~G 424 (464)
..+++.|+.. ...+++..+||.|+..++++++++|++|+.+|||||...+.|||+|+++++|+.+.. .-..++-|..|
T Consensus 495 ~~~~~~L~~~-~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRG 573 (677)
T COG1200 495 EELYEELKSF-LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRG 573 (677)
T ss_pred HHHHHHHHHH-cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhcc
Confidence 4566666632 345779999999999999999999999999999999999999999999999998764 45778999999
Q ss_pred hhhcCCCCccEEEEeeCcc
Q 012427 425 RTARAGQLGRCFTLLHKDE 443 (464)
Q Consensus 425 R~~R~g~~g~~~~~~~~~~ 443 (464)
|+||.+..+.|+.++....
T Consensus 574 RVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 574 RVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred ccCCCCcceEEEEEeCCCC
Confidence 9999999999998887665
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.3e-32 Score=273.31 Aligned_cols=358 Identities=18% Similarity=0.209 Sum_probs=233.6
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
+|. .|++.|..+...+. .|+ ++.+.||+|||+++++|++..... +..++|++||..||.|.++++..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~----~G~--Iaem~TGeGKTL~a~lp~~l~al~----G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLH----EGN--IAEMQTGEGKTLTATMPLYLNALE----GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHc----CCc--eeeecCCCcchHHHHHHHHHHHHc----CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 465 78888877654332 244 999999999999999998866664 3479999999999999999999999
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HHhhhcC-----CCcCCCCcc
Q 012427 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~~l~~~-----~~~~~~~~~ 199 (464)
..+|++++++.|+.+...+.. ...+++|+++||..+ .+.+... ....+..+.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~----------------------~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~ 201 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKK----------------------AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLN 201 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHH----------------------HhcCCCEEEECCccccchhHHhccccchhhhcccccc
Confidence 999999999999987432211 123479999999888 3433321 113467889
Q ss_pred EEEEehhhHhhhH----------------hhhhhHHHHHHhcccccc---------------------------cccccc
Q 012427 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNE---------------------------NRFSDA 236 (464)
Q Consensus 200 ~iIvDE~H~~~~~----------------~~~~~~~~~~~~~~~~~~---------------------------~~~~~~ 236 (464)
++|+||+|.++=+ .+......+...+..... +.++..
T Consensus 202 ~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~ 281 (790)
T PRK09200 202 YAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLE 281 (790)
T ss_pred eEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChh
Confidence 9999999976311 122233333332221100 000000
Q ss_pred cccc----ccccccchhhhcc-------c---cccccCC---------------------CC-----------------C
Q 012427 237 STFL----PSAFGSLKTIRRC-------G---VERGFKD---------------------KP-----------------Y 264 (464)
Q Consensus 237 ~~~~----~~~~~~~~~~~~~-------~---~~~~~~~---------------------~~-----------------~ 264 (464)
...+ ...+.+...+.+. + +...+.. .. .
T Consensus 282 ~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr 361 (790)
T PRK09200 282 HQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFR 361 (790)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHH
Confidence 0000 0000000000000 0 0000000 00 0
Q ss_pred CceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCCeEEEEecCh
Q 012427 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV 342 (464)
Q Consensus 265 ~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~s~ 342 (464)
...+..++|+|......++...+-.+.+.+++. .+....... ..+......|...+...+.. ..+.++||||+|+
T Consensus 362 ~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~--kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~ 438 (790)
T PRK09200 362 MFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTN--RPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSI 438 (790)
T ss_pred HhHHHhccCCCChHHHHHHHHHhCCcEEECCCC--CCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 011346788886443333333332222222221 112211111 12334555677778777765 3678999999999
Q ss_pred hhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCC---CCCC-----eEEEecCCC
Q 012427 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV---EGVN-----NVVNYDKPA 414 (464)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidi---p~~~-----~vi~~~~~~ 414 (464)
+.++.++..|.+.+ +++..+||++...++..+...+..| +|+|||+++++|+|+ |++. +||.++.|.
T Consensus 439 ~~se~l~~~L~~~g---i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~ 513 (790)
T PRK09200 439 EQSETFSKLLDEAG---IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME 513 (790)
T ss_pred HHHHHHHHHHHHCC---CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCC
Confidence 99999999999877 8999999999888877777776655 799999999999999 6888 999999999
Q ss_pred CcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012427 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 415 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
|...|.|++||+||.|+.|.++.|++.++.
T Consensus 514 s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 514 SRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred CHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 999999999999999999999999976544
No 73
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-32 Score=263.91 Aligned_cols=334 Identities=21% Similarity=0.244 Sum_probs=210.8
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
..||+||.+++.++.+....++.+++++|||+|||.+++.++... ..++|||+|+.+|+.||++.+.......
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-------KRSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-------cCCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 369999999999988766668889999999999999877655542 2249999999999999998887775432
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012427 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
..++.+.|+..... . ..|.|+|++++.+.. ....+....+++||+|||||
T Consensus 108 -~~~g~~~~~~~~~~---------------------------~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh 157 (442)
T COG1061 108 -DEIGIYGGGEKELE---------------------------P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHH 157 (442)
T ss_pred -cccceecCceeccC---------------------------C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEcccc
Confidence 23444444432110 0 269999999997742 11123344799999999999
Q ss_pred hhhHhhhhhHHHHHHhc------cccccccccc-cccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCcc
Q 012427 209 LLREAYQAWLPTVLQLT------RSDNENRFSD-ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (464)
Q Consensus 209 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 281 (464)
+.+..+......+.... +++. +.+. .-..+....+ ..............+...+...+...-+......
T Consensus 158 ~~a~~~~~~~~~~~~~~~~LGLTATp~--R~D~~~~~~l~~~~g--~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~ 233 (442)
T COG1061 158 LPAPSYRRILELLSAAYPRLGLTATPE--REDGGRIGDLFDLIG--PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEE 233 (442)
T ss_pred CCcHHHHHHHHhhhcccceeeeccCce--eecCCchhHHHHhcC--CeEeecCHHHHHhCCCccceEEEEEEeccchHHH
Confidence 99887776655544332 2222 1110 1111111111 0000111111122222233333332222111111
Q ss_pred chhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhh-CCCeEEEEecChhhHHHHHHHHhhcCccce
Q 012427 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRI 360 (464)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~ 360 (464)
................... ................+...+..++..+ .+.+++||+.+..++..++..+...+ .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~---~ 308 (442)
T COG1061 234 REYAKESARFRELLRARGT--LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG---I 308 (442)
T ss_pred HHhhhhhhhhhhhhhhhhh--hhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---c
Confidence 1000000000000000000 0000000111222334555555555554 47799999999999999999998765 4
Q ss_pred eEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcC
Q 012427 361 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (464)
Q Consensus 361 ~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 429 (464)
+..+.+..+..+|.+++++|+.|+.++|+++.++.+|+|+|+++++|+.+++.|...|+||+||+.|.
T Consensus 309 -~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 309 -VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred -eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 78899999999999999999999999999999999999999999999999999999999999999993
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.4e-31 Score=259.96 Aligned_cols=359 Identities=18% Similarity=0.183 Sum_probs=233.6
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
+|. .|++.|.-....+ .+..++.++||+|||+++++|++-....+ ..++|+|||..||.|.++++.++.
T Consensus 53 lg~-~p~~vQlig~~~l------~~G~Iaem~TGeGKTLva~lpa~l~aL~G----~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL------HKGKIAEMKTGEGKTLTATLPAYLNALTG----KGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhh------cCCceeeecCCCccHHHHHHHHHHHHHhC----CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 464 6788886664332 23349999999999999999986444433 269999999999999999999999
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HHhhhcCC-----CcCCCCcc
Q 012427 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~~l~~~~-----~~~~~~~~ 199 (464)
..+|++++++.|+.+...+.. .-.++|+++||..| .+++...- .+.+..+.
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~-----------------------~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~ 178 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERRE-----------------------AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFH 178 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHH-----------------------hcCCCEEEECCCchhhHHHhcccccchhhhhccccc
Confidence 999999999999877544321 22469999999999 77776542 24578899
Q ss_pred EEEEehhhHhhhHh----------------hhhhHHHHHHhcccccccc---------cccc-----ccc--cccccc--
Q 012427 200 YLVVDETDRLLREA----------------YQAWLPTVLQLTRSDNENR---------FSDA-----STF--LPSAFG-- 245 (464)
Q Consensus 200 ~iIvDE~H~~~~~~----------------~~~~~~~~~~~~~~~~~~~---------~~~~-----~~~--~~~~~~-- 245 (464)
++|+||+|.++-+. .......+...+....... +.+. ... +...+.
T Consensus 179 ~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~ 258 (745)
T TIGR00963 179 FAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLE 258 (745)
T ss_pred eeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChh
Confidence 99999999875321 1111112222211100000 0000 000 000000
Q ss_pred -------------cchhhhcc-------c---cccccCC---------------------CCC-----------------
Q 012427 246 -------------SLKTIRRC-------G---VERGFKD---------------------KPY----------------- 264 (464)
Q Consensus 246 -------------~~~~~~~~-------~---~~~~~~~---------------------~~~----------------- 264 (464)
+...+.+. + +...+.. ...
T Consensus 259 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr 338 (745)
T TIGR00963 259 NSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFR 338 (745)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHh
Confidence 00000000 0 0000000 000
Q ss_pred CceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHH--hhCCCeEEEEecCh
Q 012427 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSV 342 (464)
Q Consensus 265 ~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~lVf~~s~ 342 (464)
...+..+||+|......++...+-.+.+.++.... ....... ..+......|...+.+.+. ...+.++||||+|+
T Consensus 339 ~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp--~~R~d~~-d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si 415 (745)
T TIGR00963 339 LYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRP--VIRKDLS-DLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSV 415 (745)
T ss_pred hCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCC--eeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 01134567777654333333333333333322221 1111111 1223334456666666553 33688999999999
Q ss_pred hhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCC-------CCeEEEecCCCC
Q 012427 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG-------VNNVVNYDKPAY 415 (464)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~-------~~~vi~~~~~~s 415 (464)
+.++.+++.|.+.+ ++...+|++ ..+|+..+..|..+...|+|||+++++|+||+. .-+||.+..|.|
T Consensus 416 ~~se~ls~~L~~~g---i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s 490 (745)
T TIGR00963 416 EKSELLSNLLKERG---IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHES 490 (745)
T ss_pred HHHHHHHHHHHHcC---CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCc
Confidence 99999999999887 888899998 667889999999999999999999999999997 449999999999
Q ss_pred cchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012427 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 416 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
.+.+.|++||+||.|.+|.+..|++.+|.-.
T Consensus 491 ~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 491 RRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred HHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 9999999999999999999999998775433
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=7.1e-32 Score=271.92 Aligned_cols=335 Identities=21% Similarity=0.293 Sum_probs=247.6
Q ss_pred HHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 012427 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (464)
Q Consensus 37 ~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q 116 (464)
+........+|...+|+-|.+++..++. |+++++.+|||.||+++|.+|++- .+.-++||.|.++|++.
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA~l-------~~gitvVISPL~SLm~D 319 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPALL-------LGGVTVVISPLISLMQD 319 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHc----CCceEEEeecCCceeeEeeccccc-------cCCceEEeccHHHHHHH
Confidence 3344444568999999999999776654 999999999999999999998873 23379999999999987
Q ss_pred HHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcC---CcEEEeCchHHHHhhhcCC-C
Q 012427 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA---VDILVATPGRLMDHINATR-G 192 (464)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~IiI~T~~~l~~~l~~~~-~ 192 (464)
+...+... +++...+.+......+. .+++.+..+ .+|+..||+++...-.... .
T Consensus 320 Qv~~L~~~----~I~a~~L~s~q~~~~~~------------------~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~ 377 (941)
T KOG0351|consen 320 QVTHLSKK----GIPACFLSSIQTAAERL------------------AILQKLANGNPIIKILYVTPEKVVASEGLLESL 377 (941)
T ss_pred HHHhhhhc----CcceeeccccccHHHHH------------------HHHHHHhCCCCeEEEEEeCHHHhhcccchhhHH
Confidence 77766443 78999999988776552 233344333 6899999999865322111 1
Q ss_pred cCCCC---ccEEEEehhhHhhhHh--hhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCce
Q 012427 193 FTLEH---LCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (464)
Q Consensus 193 ~~~~~---~~~iIvDE~H~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
..+.. +.++|+||||+...++ |++...++..+... .+.+
T Consensus 378 ~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~------------------------------------~~~v 421 (941)
T KOG0351|consen 378 ADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR------------------------------------FPGV 421 (941)
T ss_pred HhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh------------------------------------CCCC
Confidence 22333 7899999999986654 22222222211111 1234
Q ss_pred eeEEeeeeeecCccc--hhcccccCCeeeecCCccccCccccccceeeccC--CchHHHHHHHHHhhCCCeEEEEecChh
Q 012427 268 VKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICES--KLKPLYLVALLQSLGEEKCIVFTSSVE 343 (464)
Q Consensus 268 ~~i~~sat~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~lVf~~s~~ 343 (464)
.++.+|||....... ...+.+.++.++........+ .|.+.... ......+.........+.+||||.++.
T Consensus 422 P~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL-----~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~ 496 (941)
T KOG0351|consen 422 PFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNL-----KYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRK 496 (941)
T ss_pred CeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCc-----eEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcc
Confidence 678889988665544 344566666655444332222 11122122 222223333334456789999999999
Q ss_pred hHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhh
Q 012427 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423 (464)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~ 423 (464)
+|+.++..|+..+ .....||++|+..+|..+.+.|-.++.+|++||-+++.|+|-|+++.||+|+.|.|...|.|-+
T Consensus 497 ~ce~vs~~L~~~~---~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~ 573 (941)
T KOG0351|consen 497 ECEQVSAVLRSLG---KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEA 573 (941)
T ss_pred hHHHHHHHHHHhc---hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhc
Confidence 9999999999887 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCccEEEEeeCcccccch
Q 012427 424 GRTARAGQLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 424 GR~~R~g~~g~~~~~~~~~~~~~~~ 448 (464)
|||||.|....|++|++..+..+..
T Consensus 574 GRAGRDG~~s~C~l~y~~~D~~~l~ 598 (941)
T KOG0351|consen 574 GRAGRDGLPSSCVLLYGYADISELR 598 (941)
T ss_pred cccCcCCCcceeEEecchhHHHHHH
Confidence 9999999999999999888665543
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.98 E-value=2e-30 Score=242.96 Aligned_cols=311 Identities=18% Similarity=0.193 Sum_probs=191.7
Q ss_pred hhHHhHHhhhCCCCCCC--CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc---
Q 012427 54 VQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV--- 128 (464)
Q Consensus 54 ~Q~~~~~~i~~~~~~~~--~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~--- 128 (464)
+|.++++.+.+ +. ++++.+|||+|||.+++++++. ...++++++|+++|+.|+.+.++.+....
T Consensus 1 hQ~~~~~~~~~----~~~~~~~i~apTGsGKT~~~~~~~l~-------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQS----KDADIIFNTAPTGAGKTLAWLTPLLH-------GENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHc----CCCCEEEEECCCCCCHHHHHHHHHHH-------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 58999888876 43 4789999999999999988874 12368999999999999999999887432
Q ss_pred -CceEEEeecCCchhHHHHHhhc-cccccccccCCchhHHHhh-hcCCcEEEeCchHHHHhhhcCC---C----cCCCCc
Q 012427 129 -GLSVGLAVGQSSIADEISELIK-RPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATR---G----FTLEHL 198 (464)
Q Consensus 129 -~~~v~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~IiI~T~~~l~~~l~~~~---~----~~~~~~ 198 (464)
+..+..+.|..... ...+.. ......+-.. ........ ...+.|+++||+.+..++.... . ..+.++
T Consensus 70 ~~~~v~~~~g~~~~d--~~~~~~~~~~~~~g~~~-~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 70 RDVNLLHVSKATLKD--IKEYANDKVGSSKGEKL-YNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCceEEEecCCchHH--HHHhhhhhcccCccchh-hhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 46666666653221 111100 0000000000 00011112 3468899999999977654321 1 124789
Q ss_pred cEEEEehhhHhhhHhhhhhH-----HHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEee
Q 012427 199 CYLVVDETDRLLREAYQAWL-----PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (464)
Q Consensus 199 ~~iIvDE~H~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 273 (464)
++||+||+|.+........+ ..++.... ...+++++|
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~--------------------------------------~~~~~i~lS 188 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE--------------------------------------CRRKFVFLS 188 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhh--------------------------------------cCCcEEEEe
Confidence 99999999987432211111 11111111 123889999
Q ss_pred eeeecCccchhccc--ccCCeeeecCC--cc-------ccCc--------cccccceeeccCCchHHHHHHHH-------
Q 012427 274 ATLTQDPNKLAQLD--LHHPLFLTTGE--TR-------YKLP--------ERLESYKLICESKLKPLYLVALL------- 327 (464)
Q Consensus 274 at~~~~~~~~~~~~--~~~~~~~~~~~--~~-------~~~~--------~~~~~~~~~~~~~~~~~~l~~~l------- 327 (464)
||+++......... ...+.....+. .. ...+ ..++..... ....+...+..++
T Consensus 189 AT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~ 267 (357)
T TIGR03158 189 ATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERF 267 (357)
T ss_pred cCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHH
Confidence 99976544433221 23332221111 00 0000 122222222 2223333332222
Q ss_pred HhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeE
Q 012427 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (464)
Q Consensus 328 ~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~v 407 (464)
+...++++||||+++..++.+++.|++.+ .++.+..+||.++..+|.+. ++.+|||||+++++|+|+|.. +|
T Consensus 268 ~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~v 339 (357)
T TIGR03158 268 RQLPGERGAIILDSLDEVNRLSDLLQQQG-LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WL 339 (357)
T ss_pred hccCCCeEEEEECCHHHHHHHHHHHhhhC-CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eE
Confidence 22356799999999999999999998743 23577889999999887644 367999999999999999976 55
Q ss_pred EEecCCCCcchhhhhhhhhh
Q 012427 408 VNYDKPAYIKTYIHRAGRTA 427 (464)
Q Consensus 408 i~~~~~~s~~~~~Q~~GR~~ 427 (464)
| ++ |.+...|+||+||+|
T Consensus 340 i-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 I-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred E-EC-CCCHHHHhhhcccCC
Confidence 5 44 788999999999986
No 77
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.98 E-value=1.8e-30 Score=272.18 Aligned_cols=317 Identities=20% Similarity=0.286 Sum_probs=207.3
Q ss_pred HHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 012427 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 38 ~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~ 117 (464)
++.+.+++.....|+++|..+++.++. |+++++.+|||+|||. +.+++...+.. .+.+++||+||++|+.|+
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~-f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi 137 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTT-FGLAMSLFLAK---KGKRCYIILPTTLLVIQV 137 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeCHHHHHHHH
Confidence 344555553334799999999887775 9999999999999997 45555554443 256899999999999999
Q ss_pred HHHHHHhccccCceE---EEeecCCchhHHHHHhhccccccccccCCchhHHHhhhc-CCcEEEeCchHHHHhhhcCCCc
Q 012427 118 KDVFAAIAPAVGLSV---GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF 193 (464)
Q Consensus 118 ~~~~~~~~~~~~~~v---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiI~T~~~l~~~l~~~~~~ 193 (464)
.+.++.++...++.+ ..++|+.+...+. ..+..+.+ +++|+|+||+.|.+.+....
T Consensus 138 ~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~------------------~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-- 197 (1171)
T TIGR01054 138 AEKISSLAEKAGVGTVNIGAYHSRLPTKEKK------------------EFMERIENGDFDILITTTMFLSKNYDELG-- 197 (1171)
T ss_pred HHHHHHHHHhcCCceeeeeeecCCCCHHHHH------------------HHHHHHhcCCCCEEEECHHHHHHHHHHhc--
Confidence 999999988766554 3467877655431 12233333 48999999999988766522
Q ss_pred CCCCccEEEEehhhHhhhH-----------hhhh-hHHHHHHhccccccccccccccccccccccchhhhccccccccCC
Q 012427 194 TLEHLCYLVVDETDRLLRE-----------AYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (464)
Q Consensus 194 ~~~~~~~iIvDE~H~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
. +++++|+||||++++. +|.+ .+..++........ ......+..... ....
T Consensus 198 -~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~----------~~~~~~~~~~~~-----~~~~ 260 (1171)
T TIGR01054 198 -P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLK----------LYRALHAKKRLE-----LLEA 260 (1171)
T ss_pred -C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccc----------cchHHHHHHHHH-----HHHh
Confidence 2 7899999999999873 3333 23443332211000 000000000000 0000
Q ss_pred CCCCce--eeEEeeeee-ecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEE
Q 012427 262 KPYPRL--VKMVLSATL-TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338 (464)
Q Consensus 262 ~~~~~~--~~i~~sat~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf 338 (464)
.+ ... +.+++|||. +..... ..+.+...+..+.... ....+.+.+..... +...+..++... +.++|||
T Consensus 261 ~~-~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~-~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVF 332 (1171)
T TIGR01054 261 IP-GKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGSD-TLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVY 332 (1171)
T ss_pred hh-hccCcEEEEEeCCCCccccHH---HHcccccceEecCccc-cccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEE
Confidence 00 111 356789994 333221 1122233333333222 22333333332222 234566666654 4689999
Q ss_pred ecCh---hhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEc----ccccccCCCCC-CCeEEEe
Q 012427 339 TSSV---ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNY 410 (464)
Q Consensus 339 ~~s~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t----~~~~~Gidip~-~~~vi~~ 410 (464)
|++. +.|+.+++.|++.+ +++..+||+++. ..++.|++|+.++|||| +.+++|+|+|+ +++||++
T Consensus 333 v~t~~~~~~a~~l~~~L~~~g---~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~ 405 (1171)
T TIGR01054 333 VSIDYGKEKAEEIAEFLENHG---VKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFL 405 (1171)
T ss_pred EeccccHHHHHHHHHHHHhCC---ceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEE
Confidence 9999 99999999999876 899999999963 68999999999999995 89999999999 8999999
Q ss_pred cCCC
Q 012427 411 DKPA 414 (464)
Q Consensus 411 ~~~~ 414 (464)
+.|.
T Consensus 406 ~~P~ 409 (1171)
T TIGR01054 406 GVPK 409 (1171)
T ss_pred CCCC
Confidence 9884
No 78
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=7.3e-31 Score=232.87 Aligned_cols=330 Identities=19% Similarity=0.256 Sum_probs=229.2
Q ss_pred HHHHHHHH-CCCCcc-chhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 012427 38 RLKVALQN-MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (464)
Q Consensus 38 ~i~~~~~~-~~~~~l-~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~ 115 (464)
.+.+.|++ ||+..+ ++.|..+...+.+ .++++.+++|||+||+++|.+|++-. +..+||++|.++|.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPaL~~-------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPALVH-------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchHHHh-------CCeEEEehHHHHHHH
Confidence 46677776 677654 5789998777765 56999999999999999999998842 237899999999999
Q ss_pred HHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh---hcCCcEEEeCchHHH-----Hhh
Q 012427 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL---QSAVDILVATPGRLM-----DHI 187 (464)
Q Consensus 116 q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IiI~T~~~l~-----~~l 187 (464)
.+.+-+.++ .+++.-+.+..+..++ ..+...+ ..+..++..||+... .+|
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER------------------~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lL 133 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVER------------------SRIMGDLAKEKPTIKMLYITPEGAATDGFQKLL 133 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHH------------------HHHHHHHHhcCCceeEEEEchhhhhhhhHHHHH
Confidence 888887776 4555555554444333 2222222 233578999998642 333
Q ss_pred hcCCCcCCCCccEEEEehhhHhhhHhhh--hhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCC
Q 012427 188 NATRGFTLEHLCYLVVDETDRLLREAYQ--AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (464)
Q Consensus 188 ~~~~~~~~~~~~~iIvDE~H~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
... .+-..+.+++|||||+...++.. +..- -++.+++. .+
T Consensus 134 n~L--~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL-~LG~LRS~-----------------------------------~~ 175 (641)
T KOG0352|consen 134 NGL--ANRDVLRYIVVDEAHCVSQWGHDFRPDYL-TLGSLRSV-----------------------------------CP 175 (641)
T ss_pred HHH--hhhceeeeEEechhhhHhhhccccCcchh-hhhhHHhh-----------------------------------CC
Confidence 321 12335789999999998655421 1100 01111110 12
Q ss_pred ceeeEEeeeeeecCccc--hhcccccCCeeeecCCccccCccccccceeecc----CCchHHHHHHHHHh----------
Q 012427 266 RLVKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICE----SKLKPLYLVALLQS---------- 329 (464)
Q Consensus 266 ~~~~i~~sat~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~---------- 329 (464)
.+.-+.+|||......+ ...+.++.|+-+-... .-..+++.... -......|.+.-..
T Consensus 176 ~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP------~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~ 249 (641)
T KOG0352|consen 176 GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP------TFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQ 249 (641)
T ss_pred CCceEEeecccChhHHHHHHHHHhhcCcHHhccCc------chhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhc
Confidence 33457778887665544 3345566665432221 11111111000 01111112222111
Q ss_pred h---CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCe
Q 012427 330 L---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 406 (464)
Q Consensus 330 ~---~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~ 406 (464)
. -.+..||||.+++.|+.++-.|...| +....||+|+...+|.++.+.+-+++..||++|..++.|+|-|+++.
T Consensus 250 ~~K~~~GCGIVYCRTR~~cEq~AI~l~~~G---i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRF 326 (641)
T KOG0352|consen 250 NKKTFTGCGIVYCRTRNECEQVAIMLEIAG---IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRF 326 (641)
T ss_pred CCCCcCcceEEEeccHHHHHHHHHHhhhcC---cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeE
Confidence 1 13468999999999999999998777 88999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012427 407 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 407 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
||+++.+.|+.-|.|-.||+||.|+...|-.+++.+|...
T Consensus 327 ViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 327 VIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred EEecCchhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 9999999999999999999999999999999998887664
No 79
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=1.5e-29 Score=253.79 Aligned_cols=328 Identities=17% Similarity=0.184 Sum_probs=254.8
Q ss_pred HHHHHHHHHCCCCccchhhHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 37 ~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~--~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
++..+.-..|+| .-++-|..|+.++.+-+.++ .|=++||..|-|||-+++=++...+..+ ..|.+||||.-|+
T Consensus 582 ~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G----KQVAvLVPTTlLA 656 (1139)
T COG1197 582 EWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG----KQVAVLVPTTLLA 656 (1139)
T ss_pred HHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC----CeEEEEcccHHhH
Confidence 344444456888 68999999999999888777 5679999999999999998888887765 4899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcC-CcEEEeCchHHHHhhhcCCCc
Q 012427 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGF 193 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IiI~T~~~l~~~l~~~~~~ 193 (464)
+|.+++|++-+...+++|..+..-.+.... ..+.+.+..| .||+|+|.. ++.. .+
T Consensus 657 ~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~------------------~~il~~la~G~vDIvIGTHr----LL~k--dv 712 (1139)
T COG1197 657 QQHYETFKERFAGFPVRIEVLSRFRSAKEQ------------------KEILKGLAEGKVDIVIGTHR----LLSK--DV 712 (1139)
T ss_pred HHHHHHHHHHhcCCCeeEEEecccCCHHHH------------------HHHHHHHhcCCccEEEechH----hhCC--Cc
Confidence 999999999888889999999888776655 3334455555 899999943 3332 36
Q ss_pred CCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEee
Q 012427 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (464)
Q Consensus 194 ~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 273 (464)
.+.+++++||||-|++.-. ..+.++++. ..+-++.+|
T Consensus 713 ~FkdLGLlIIDEEqRFGVk-~KEkLK~Lr------------------------------------------~~VDvLTLS 749 (1139)
T COG1197 713 KFKDLGLLIIDEEQRFGVK-HKEKLKELR------------------------------------------ANVDVLTLS 749 (1139)
T ss_pred EEecCCeEEEechhhcCcc-HHHHHHHHh------------------------------------------ccCcEEEee
Confidence 6789999999999998322 123333333 233578899
Q ss_pred eeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh-hCCCeEEEEecChhhHHHHHHHH
Q 012427 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLL 352 (464)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~lVf~~s~~~~~~l~~~l 352 (464)
|||-+......-.++++..++..... ....++. .+.+......-..+++. .++|++-...+.++..+.+++.|
T Consensus 750 ATPIPRTL~Msm~GiRdlSvI~TPP~---~R~pV~T---~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L 823 (1139)
T COG1197 750 ATPIPRTLNMSLSGIRDLSVIATPPE---DRLPVKT---FVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERL 823 (1139)
T ss_pred CCCCcchHHHHHhcchhhhhccCCCC---CCcceEE---EEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHH
Confidence 99988888888888887666543332 1111222 22233333333333433 46889989999999999999999
Q ss_pred hhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC-CCcchhhhhhhhhhcCCC
Q 012427 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAGQ 431 (464)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~ 431 (464)
++. -+..++.+.||.|+..+-++++..|.+|+.+||+||.+.+.|+|+|+++.+|+.+.. .-..++.|..||+||.++
T Consensus 824 ~~L-VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~ 902 (1139)
T COG1197 824 REL-VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNK 902 (1139)
T ss_pred HHh-CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccc
Confidence 986 345789999999999999999999999999999999999999999999999988765 457899999999999999
Q ss_pred CccEEEEeeCcc
Q 012427 432 LGRCFTLLHKDE 443 (464)
Q Consensus 432 ~g~~~~~~~~~~ 443 (464)
.+.|+.++.++.
T Consensus 903 ~AYAYfl~p~~k 914 (1139)
T COG1197 903 QAYAYFLYPPQK 914 (1139)
T ss_pred eEEEEEeecCcc
Confidence 999998887543
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=4.7e-30 Score=261.31 Aligned_cols=129 Identities=20% Similarity=0.248 Sum_probs=112.5
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhh-cCccceeEeeccCcccHHHHHHHHHHHhcC--CeeEEEEcc
Q 012427 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLVSSD 393 (464)
Q Consensus 317 ~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~iLi~t~ 393 (464)
..|...+..+++...+.|+||||++...+..+.+.|++ .| +.+..+||+|+..+|++.++.|+.+ ..+|||||+
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~G---i~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREG---IRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccC---eeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech
Confidence 45777888888888889999999999999999999954 34 8899999999999999999999974 589999999
Q ss_pred cccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEe--eCcccccch
Q 012427 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL--HKDEKKGAI 448 (464)
Q Consensus 394 ~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~--~~~~~~~~~ 448 (464)
++++|+|++.+++||+|+.|+++..|.||+||++|.|+.+.+.++. ..+...+.+
T Consensus 555 vgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i 611 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERL 611 (956)
T ss_pred hhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHH
Confidence 9999999999999999999999999999999999999988765444 333333333
No 81
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.4e-30 Score=257.62 Aligned_cols=363 Identities=19% Similarity=0.199 Sum_probs=257.9
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc-------CCccEEE
Q 012427 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-------RCLRALV 106 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~-------~~~~~li 106 (464)
.+|.+=+.++.. .+.++.+|...+.+.+. ...+++++||||+|||-++++.+++.+..+.. ...++.+
T Consensus 295 elP~Wnq~aF~g--~~sLNrIQS~v~daAl~---~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVY 369 (1674)
T KOG0951|consen 295 ELPKWNQPAFFG--KQSLNRIQSKVYDAALR---GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVY 369 (1674)
T ss_pred CCcchhhhhccc--chhhhHHHHHHHHHHhc---CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEE
Confidence 577777777664 55699999999777664 45899999999999999999999999976532 3347999
Q ss_pred EcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHh
Q 012427 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (464)
Q Consensus 107 l~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~ 186 (464)
++|.++|++.|...|.+.....|+.|....|+.....+ --.+.+|+|+||++.--.
T Consensus 370 IAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~------------------------qieeTqVIV~TPEK~DiI 425 (1674)
T KOG0951|consen 370 IAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE------------------------QIEETQVIVTTPEKWDII 425 (1674)
T ss_pred EeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhh------------------------hhhcceeEEeccchhhhh
Confidence 99999999999999999988899999999999765443 123458999999996333
Q ss_pred hhcCCCc-CCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCC
Q 012427 187 INATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (464)
Q Consensus 187 l~~~~~~-~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
-++.+.. ..+-++++|+||.| ++.+..++.++.+...+....... -.
T Consensus 426 TRk~gdraY~qlvrLlIIDEIH-LLhDdRGpvLESIVaRt~r~ses~-------------------------------~e 473 (1674)
T KOG0951|consen 426 TRKSGDRAYEQLVRLLIIDEIH-LLHDDRGPVLESIVARTFRRSEST-------------------------------EE 473 (1674)
T ss_pred hcccCchhHHHHHHHHhhhhhh-hcccccchHHHHHHHHHHHHhhhc-------------------------------cc
Confidence 2222211 13347899999999 556667777777766554321100 02
Q ss_pred ceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCC--ch------HHHHHHHHHhhCCCeEEE
Q 012427 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK--LK------PLYLVALLQSLGEEKCIV 337 (464)
Q Consensus 266 ~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~l~~~l~~~~~~~~lV 337 (464)
..+.+++|||+++..+...-.....+-++-.+.+ ..|..+.+.++-...+ .+ .....++++....+++||
T Consensus 474 ~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~s--yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLV 551 (1674)
T KOG0951|consen 474 GSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSS--YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLV 551 (1674)
T ss_pred CceeeeecccCCchhhhHHHhccCcccccccCcc--cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 3378999999977655443222222211111111 2233333333322222 11 234555666767789999
Q ss_pred EecChhhHHHHHHHHhhc----------------------------------CccceeEeeccCcccHHHHHHHHHHHhc
Q 012427 338 FTSSVESTHRLCTLLNHF----------------------------------GELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (464)
Q Consensus 338 f~~s~~~~~~l~~~l~~~----------------------------------~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 383 (464)
|+.|++++.+.|+.++.. ..+++.+++.|+||+..+|..+.+.|..
T Consensus 552 FVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~ 631 (1674)
T KOG0951|consen 552 FVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFAD 631 (1674)
T ss_pred EEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhc
Confidence 999999998888887731 1145778999999999999999999999
Q ss_pred CCeeEEEEcccccccCCCCCCCeEEEec-----C------CCCcchhhhhhhhhhcCCCCc--cEEEEeeCcccccchhh
Q 012427 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYD-----K------PAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEKKGAIGR 450 (464)
Q Consensus 384 ~~~~iLi~t~~~~~Gidip~~~~vi~~~-----~------~~s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~~~~~~ 450 (464)
|+.+++++|..+++|+|+|. +.||+=+ + +.++.+..||.|||||.+.++ .++ ++++...-.++..
T Consensus 632 g~iqvlvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegi-iit~~se~qyyls 709 (1674)
T KOG0951|consen 632 GHIQVLVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGI-IITDHSELQYYLS 709 (1674)
T ss_pred CceeEEEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCcee-eccCchHhhhhHH
Confidence 99999999999999999995 5566533 2 356788999999999987444 444 4555555666778
Q ss_pred ccccccccccc
Q 012427 451 SLFHQSRVLGV 461 (464)
Q Consensus 451 ~~~~~~~~~~~ 461 (464)
.+.++.|++|+
T Consensus 710 ~mn~qLpiesq 720 (1674)
T KOG0951|consen 710 LMNQQLPIESQ 720 (1674)
T ss_pred hhhhcCCChHH
Confidence 88888888875
No 82
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=7.3e-30 Score=265.74 Aligned_cols=330 Identities=19% Similarity=0.202 Sum_probs=199.5
Q ss_pred ccchhhHHhHHhhhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~-~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
.+|+||.+|+..+.+++..+ ++++++++||+|||++++. ++..+.... ...++|||+|+.+|+.|+.+.|..+....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~-~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAK-RFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcC-ccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 58999999999888766555 6799999999999998554 444444332 34589999999999999999999874321
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcC----CCcCCCCccEEEEe
Q 012427 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVVD 204 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~----~~~~~~~~~~iIvD 204 (464)
+..+...++.....+. .......|+|+|++++.+.+... ..+.+..+++||+|
T Consensus 491 ~~~~~~i~~i~~L~~~-----------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiD 547 (1123)
T PRK11448 491 DQTFASIYDIKGLEDK-----------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVD 547 (1123)
T ss_pred ccchhhhhchhhhhhh-----------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEE
Confidence 2111111111100000 01234689999999998765321 11456789999999
Q ss_pred hhhHhhhH---------hh------hhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceee
Q 012427 205 ETDRLLRE---------AY------QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (464)
Q Consensus 205 E~H~~~~~---------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
|||+.... .+ ......++..+. ...
T Consensus 548 EaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd----------------------------------------A~~ 587 (1123)
T PRK11448 548 EAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD----------------------------------------AVK 587 (1123)
T ss_pred CCCCCCccccccccchhccchhhhHHHHHHHHHhhcC----------------------------------------ccE
Confidence 99986420 00 111222222211 134
Q ss_pred EEeeeeeecCccchh-------------c-cccc---CCeeeecCCccc----cCcccccccee--------eccC----
Q 012427 270 MVLSATLTQDPNKLA-------------Q-LDLH---HPLFLTTGETRY----KLPERLESYKL--------ICES---- 316 (464)
Q Consensus 270 i~~sat~~~~~~~~~-------------~-~~~~---~~~~~~~~~~~~----~~~~~~~~~~~--------~~~~---- 316 (464)
+++||||.......- . -.+. .|..+....... ...+....+.. ..+.
T Consensus 588 IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~ 667 (1123)
T PRK11448 588 IGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDF 667 (1123)
T ss_pred EEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhh
Confidence 666666643211100 0 0011 011111100000 00000000000 0000
Q ss_pred -----------CchHHH----HHHHHHhhCCCeEEEEecChhhHHHHHHHHhhc-----C-ccceeEeeccCcccHHHHH
Q 012427 317 -----------KLKPLY----LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-----G-ELRIKIKEYSGLQRQSVRS 375 (464)
Q Consensus 317 -----------~~~~~~----l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~-----~-~~~~~~~~~~~~~~~~~r~ 375 (464)
...... +...+....++|+||||.++++|+.+++.|.+. + ..+..+..++|+++ ++.
T Consensus 668 ~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~ 745 (1123)
T PRK11448 668 EVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPD 745 (1123)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chH
Confidence 000001 111222223579999999999999999988763 1 11234556888875 467
Q ss_pred HHHHHHhcCCe-eEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCC--CccEEEEeeCccccc
Q 012427 376 KTLKAFREGKI-QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEKKG 446 (464)
Q Consensus 376 ~~~~~f~~~~~-~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~ 446 (464)
+++++|++++. .|+|+++++.+|+|+|.+++||+++++.|...|+|++||+.|... .+....++|--+...
T Consensus 746 ~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~vg~~~ 819 (1123)
T PRK11448 746 QLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAVDIYE 819 (1123)
T ss_pred HHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehHHHHH
Confidence 89999999876 699999999999999999999999999999999999999999754 356666666444443
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.5e-28 Score=247.30 Aligned_cols=321 Identities=21% Similarity=0.231 Sum_probs=207.5
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.|++.|.+++..+.+.+ ..+++++.++||+|||.+|+.++...+.. +.++||++|+++|+.|+.+.+++.+ +
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~----g~~vLvLvPt~~L~~Q~~~~l~~~f---g 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ----GKQALVLVPEIALTPQMLARFRARF---G 215 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---C
Confidence 69999999999887644 45789999999999999998877766654 3479999999999999999998754 5
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012427 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
..+..++|+.+..++. +.|..+. ...+|+|+|+..+. ..+.++++||+||+|.
T Consensus 216 ~~v~~~~s~~s~~~r~------------------~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 216 APVAVLHSGLSDGERL------------------DEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHD 269 (679)
T ss_pred CCEEEEECCCCHHHHH------------------HHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCc
Confidence 7889999987665542 2333333 34799999987652 3467899999999997
Q ss_pred hhhHhhh---hhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhc
Q 012427 209 LLREAYQ---AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (464)
Q Consensus 209 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 285 (464)
..-.... ...+.+...... ....+.+++|||+.........
T Consensus 270 ~s~~~~~~p~y~~r~va~~ra~------------------------------------~~~~~~il~SATps~~s~~~~~ 313 (679)
T PRK05580 270 SSYKQQEGPRYHARDLAVVRAK------------------------------------LENIPVVLGSATPSLESLANAQ 313 (679)
T ss_pred cccccCcCCCCcHHHHHHHHhh------------------------------------ccCCCEEEEcCCCCHHHHHHHh
Confidence 5321110 011111110000 0233789999998644333322
Q ss_pred ccccCCeeeecCCccccCccccccceeec--c--C-CchHHHHHHHHHh-h-CCCeEEEEecChh---------------
Q 012427 286 LDLHHPLFLTTGETRYKLPERLESYKLIC--E--S-KLKPLYLVALLQS-L-GEEKCIVFTSSVE--------------- 343 (464)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~-~~~~~~l~~~l~~-~-~~~~~lVf~~s~~--------------- 343 (464)
.+................+. +....... . . ..-...+.+.+++ . .++++|+|++.+.
T Consensus 314 ~g~~~~~~l~~r~~~~~~p~-v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~ 392 (679)
T PRK05580 314 QGRYRLLRLTKRAGGARLPE-VEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE 392 (679)
T ss_pred ccceeEEEeccccccCCCCe-EEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC
Confidence 11111111111111011111 00000000 0 0 0011223333332 2 3557888876521
Q ss_pred ---------------------------------------------hHHHHHHHHhhcCccceeEeeccCccc--HHHHHH
Q 012427 344 ---------------------------------------------STHRLCTLLNHFGELRIKIKEYSGLQR--QSVRSK 376 (464)
Q Consensus 344 ---------------------------------------------~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~~r~~ 376 (464)
-++.+++.|++. .++.++..+|+++. ..+++.
T Consensus 393 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~-fp~~~v~~~~~d~~~~~~~~~~ 471 (679)
T PRK05580 393 CPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL-FPEARILRIDRDTTRRKGALEQ 471 (679)
T ss_pred CCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh-CCCCcEEEEeccccccchhHHH
Confidence 345666666553 23467889999986 457889
Q ss_pred HHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCC------------cchhhhhhhhhhcCCCCccEEEEeeCc
Q 012427 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY------------IKTYIHRAGRTARAGQLGRCFTLLHKD 442 (464)
Q Consensus 377 ~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 442 (464)
+++.|++|+.+|||+|++++.|+|+|++++|++++.+.. ...|.|++||+||.++.|.+++.....
T Consensus 472 ~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 472 LLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred HHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 999999999999999999999999999999988765522 246899999999998999988665433
No 84
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=7.8e-29 Score=214.42 Aligned_cols=306 Identities=21% Similarity=0.207 Sum_probs=218.2
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
.+|+++|+.+-..++..+.+.++.+++|.||+|||-+..-++-..+.. +.++.+.+|+.+.+.+++..++..+.
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~----G~~vciASPRvDVclEl~~Rlk~aF~-- 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ----GGRVCIASPRVDVCLELYPRLKQAFS-- 169 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc----CCeEEEecCcccchHHHHHHHHHhhc--
Confidence 379999999988888888889999999999999999855544444443 44899999999999999999998766
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012427 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
+..+.+++|+++...+ ..++|+|.+.|+++... |+++|+||+|.
T Consensus 170 ~~~I~~Lyg~S~~~fr----------------------------~plvVaTtHQLlrFk~a--------FD~liIDEVDA 213 (441)
T COG4098 170 NCDIDLLYGDSDSYFR----------------------------APLVVATTHQLLRFKQA--------FDLLIIDEVDA 213 (441)
T ss_pred cCCeeeEecCCchhcc----------------------------ccEEEEehHHHHHHHhh--------ccEEEEecccc
Confidence 4678888998764332 48999999998886553 78999999997
Q ss_pred hh---hHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhc
Q 012427 209 LL---REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (464)
Q Consensus 209 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 285 (464)
+. +......++..... .-..|.+|||++........
T Consensus 214 FP~~~d~~L~~Av~~ark~-----------------------------------------~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 214 FPFSDDQSLQYAVKKARKK-----------------------------------------EGATIYLTATPTKKLERKIL 252 (441)
T ss_pred ccccCCHHHHHHHHHhhcc-----------------------------------------cCceEEEecCChHHHHHHhh
Confidence 63 22222223322221 12578999999766655544
Q ss_pred ccccCCeeeecCCccccCccccccceeeccCCchH------HHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCc
Q 012427 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKP------LYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGE 357 (464)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~ 357 (464)
..-...+.++.......++. ..+........++ ..+...+++. .+.++++|+++++..+.+++.|++. .
T Consensus 253 ~g~~~~~klp~RfH~~pLpv--Pkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~-~ 329 (441)
T COG4098 253 KGNLRILKLPARFHGKPLPV--PKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKK-L 329 (441)
T ss_pred hCCeeEeecchhhcCCCCCC--CceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhh-C
Confidence 44333344444433333322 2222222221111 1344455443 4679999999999999999999552 2
Q ss_pred cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC--CCcchhhhhhhhhhcCC--CCc
Q 012427 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AYIKTYIHRAGRTARAG--QLG 433 (464)
Q Consensus 358 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~--~s~~~~~Q~~GR~~R~g--~~g 433 (464)
....+..+|+... .|.+.+++|++|+.++||+|.++++|+.+|++++.|+-.-. .+...++|..||+||.- ..|
T Consensus 330 ~~~~i~~Vhs~d~--~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtG 407 (441)
T COG4098 330 PKETIASVHSEDQ--HRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTG 407 (441)
T ss_pred CccceeeeeccCc--cHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCC
Confidence 2245567888754 48999999999999999999999999999999987776544 56778999999999974 466
Q ss_pred cEEEEeeCc
Q 012427 434 RCFTLLHKD 442 (464)
Q Consensus 434 ~~~~~~~~~ 442 (464)
.+..|-..-
T Consensus 408 dv~FFH~G~ 416 (441)
T COG4098 408 DVLFFHYGK 416 (441)
T ss_pred cEEEEeccc
Confidence 666555443
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=5.3e-28 Score=244.92 Aligned_cols=335 Identities=19% Similarity=0.184 Sum_probs=205.3
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
..|+++|..+... ...+..+++.+|||+|||.+++.++...+..+ ...+++|..||.+.+.|+++.+.++....
T Consensus 285 ~~p~p~Q~~~~~~----~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~--~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 285 YQPRQLQTLVDAL----PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG--LADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCChHHHHHHHhh----ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 4899999876321 12356799999999999999887666544433 23479999999999999999988754432
Q ss_pred --CceEEEeecCCchhHHHHHhhccccccccccCCch-hHHHhhh---c---CCcEEEeCchHHHHhhhcCCCcCCCCc-
Q 012427 129 --GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE-DVLQELQ---S---AVDILVATPGRLMDHINATRGFTLEHL- 198 (464)
Q Consensus 129 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~---~~~IiI~T~~~l~~~l~~~~~~~~~~~- 198 (464)
...+.+.+|..........+.... .......+.. ...+++. + -.+|+|+|.+.++......+...+..+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRA-ATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhccc-ccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 357888898876544332222110 0000000000 1112222 1 169999999988754443321222222
Q ss_pred ---cEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeee
Q 012427 199 ---CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (464)
Q Consensus 199 ---~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat 275 (464)
++||+||+|.+ +......+..++..... ....+|++|||
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~-------------------------------------~g~~vIllSAT 479 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ-------------------------------------AGGSVILLSAT 479 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHh-------------------------------------cCCcEEEEeCC
Confidence 48999999976 33334445555543322 11268999999
Q ss_pred eecCccchh-ccccc---------CCeeeecCC---ccccCcc------ccccceee---ccC-CchHHHHHHHHHh-hC
Q 012427 276 LTQDPNKLA-QLDLH---------HPLFLTTGE---TRYKLPE------RLESYKLI---CES-KLKPLYLVALLQS-LG 331 (464)
Q Consensus 276 ~~~~~~~~~-~~~~~---------~~~~~~~~~---~~~~~~~------~~~~~~~~---~~~-~~~~~~l~~~l~~-~~ 331 (464)
++....... ..+-. -|.+..... ....... ........ ... ......+..+++. ..
T Consensus 480 LP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~ 559 (878)
T PRK09694 480 LPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANA 559 (878)
T ss_pred CCHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 976543321 11100 011000000 0000000 00001110 011 1122333334333 35
Q ss_pred CCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHH----HHHHHHH-hcCC---eeEEEEcccccccCCCCC
Q 012427 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR----SKTLKAF-REGK---IQVLVSSDAMTRGMDVEG 403 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r----~~~~~~f-~~~~---~~iLi~t~~~~~Gidip~ 403 (464)
+++++|||++++.|+.+++.|++.......+..+|+.++..+| +++++.| ++++ ..|||+|++++.|+|+ +
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d 638 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-D 638 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-C
Confidence 6789999999999999999999754334678999999999888 4567788 5555 4799999999999999 5
Q ss_pred CCeEEEecCCCCcchhhhhhhhhhcCCC
Q 012427 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (464)
Q Consensus 404 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~ 431 (464)
++.+|....| +..++||+||++|.++
T Consensus 639 ~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 639 FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 7888887666 6799999999999875
No 86
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.96 E-value=2.3e-28 Score=217.48 Aligned_cols=292 Identities=25% Similarity=0.361 Sum_probs=220.7
Q ss_pred cEEEEcccHHHHHHHHHHHHHhcccc---CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeC
Q 012427 103 RALVVLPTRDLALQVKDVFAAIAPAV---GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (464)
Q Consensus 103 ~~lil~P~~~L~~q~~~~~~~~~~~~---~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T 179 (464)
.++|+-|+++|++|....++++-... .++..++.|+.....+. ..+..+.+|+|+|
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~---------------------~ql~~g~~ivvGt 346 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQC---------------------KQLKDGTHIVVGT 346 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHH---------------------HHhhcCceeeecC
Confidence 58999999999999999777765543 23333555554433332 3345678999999
Q ss_pred chHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhcccccccc
Q 012427 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
|.++...+..+. +.+...+++++||++.++.+++.+.+.++...++....+
T Consensus 347 pgRl~~~is~g~-~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsd---------------------------- 397 (725)
T KOG0349|consen 347 PGRLLQPISKGL-VTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSD---------------------------- 397 (725)
T ss_pred chhhhhhhhccc-eeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcC----------------------------
Confidence 999999888754 678889999999999999999999998888776654322
Q ss_pred CCCCCCceeeEEeeeeeecC-ccchhcccccCCeeeecCCccccCccccccceeecc-----------------------
Q 012427 260 KDKPYPRLVKMVLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE----------------------- 315 (464)
Q Consensus 260 ~~~~~~~~~~i~~sat~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 315 (464)
..+++.++.|||+... .....+..++-|..+.....+ ..++.+++....+.
T Consensus 398 ----g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kd 472 (725)
T KOG0349|consen 398 ----GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKD 472 (725)
T ss_pred ----CcccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccceeecCCccCccHHHHhhhhccCCccccc
Confidence 2445778888887542 233334444545444433322 33333333221110
Q ss_pred -------CCchHH---------HHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHH
Q 012427 316 -------SKLKPL---------YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379 (464)
Q Consensus 316 -------~~~~~~---------~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~ 379 (464)
..+... .-...++.+...++|+||.+..+|..+.+++.+.+...+.++.+||+..+.+|++-++
T Consensus 473 n~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle 552 (725)
T KOG0349|consen 473 NLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLE 552 (725)
T ss_pred ccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHH
Confidence 111111 1222234456679999999999999999999999888899999999999999999999
Q ss_pred HHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccccchh
Q 012427 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAIG 449 (464)
Q Consensus 380 ~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 449 (464)
+|+..+.++||||+.+.+|+|+.++-.+|...+|-....|+||+||+||..+-|.++.++.....+.||-
T Consensus 553 ~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh 622 (725)
T KOG0349|consen 553 SFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYH 622 (725)
T ss_pred hhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeeh
Confidence 9999999999999999999999999999999999999999999999999999999999998888888773
No 87
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=5.5e-28 Score=249.64 Aligned_cols=300 Identities=18% Similarity=0.249 Sum_probs=194.0
Q ss_pred hhCCCCCCCCEEEECCCCchhHHHhHHH-HHHHHHhhccCCccEEEEccc----HHHHHHHHHHHHHhccccCceEEEee
Q 012427 62 TIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCLRALVVLPT----RDLALQVKDVFAAIAPAVGLSVGLAV 136 (464)
Q Consensus 62 i~~~~~~~~~~li~~~tG~GKT~~~~~~-~l~~~~~~~~~~~~~lil~P~----~~L~~q~~~~~~~~~~~~~~~v~~~~ 136 (464)
|+..+..++.++++|+||||||.. +| ++...-.+ ....+++.-|. ++++.++++++..- .|-.++.-.
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g--~~g~I~~TQPRRlAArsLA~RVA~El~~~---lG~~VGY~v 154 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRG--VKGLIGHTQPRRLAARTVANRIAEELETE---LGGCVGYKV 154 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCC--CCCceeeCCCcHHHHHHHHHHHHHHHhhh---hcceeceee
Confidence 444455678889999999999995 44 22211111 11123333464 56666666666542 122222211
Q ss_pred cCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH-hhhHhhh
Q 012427 137 GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ 215 (464)
Q Consensus 137 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~-~~~~~~~ 215 (464)
... + ....+.+|+|+|++.|++.+... ..++++++||+||||. .++..+.
T Consensus 155 rf~---~------------------------~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfL 205 (1294)
T PRK11131 155 RFN---D------------------------QVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFI 205 (1294)
T ss_pred cCc---c------------------------ccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchH
Confidence 111 0 12345699999999999988753 3478999999999994 5554443
Q ss_pred h-hHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeee
Q 012427 216 A-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294 (464)
Q Consensus 216 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 294 (464)
- .+..++... +..+++++|||+.. ..+...+...+.+
T Consensus 206 Lg~Lk~lL~~r---------------------------------------pdlKvILmSATid~--e~fs~~F~~apvI- 243 (1294)
T PRK11131 206 LGYLKELLPRR---------------------------------------PDLKVIITSATIDP--ERFSRHFNNAPII- 243 (1294)
T ss_pred HHHHHHhhhcC---------------------------------------CCceEEEeeCCCCH--HHHHHHcCCCCEE-
Confidence 2 222222110 23489999999953 3444444444433
Q ss_pred ecCCccccCccccccceeeccCCc---hHHH---HHHHH---HhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeec
Q 012427 295 TTGETRYKLPERLESYKLICESKL---KPLY---LVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---l~~~l---~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~ 365 (464)
........ ++.++....... +... +...+ .....+.+|||+++..+++.+++.|++.+.....+..+
T Consensus 244 ~V~Gr~~p----Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpL 319 (1294)
T PRK11131 244 EVSGRTYP----VEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPL 319 (1294)
T ss_pred EEcCcccc----ceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeec
Confidence 22221111 222222221111 1222 22222 12346789999999999999999999876444568899
Q ss_pred cCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecC------------------CCCcchhhhhhhhhh
Q 012427 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTA 427 (464)
Q Consensus 366 ~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~------------------~~s~~~~~Q~~GR~~ 427 (464)
||+++..+|..+++. .|..+|||||+++++|+|+|++++||.++. +.|..+|.||.||+|
T Consensus 320 hg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAG 397 (1294)
T PRK11131 320 YARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCG 397 (1294)
T ss_pred ccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccC
Confidence 999999999998885 477899999999999999999999999863 245578999999999
Q ss_pred cCCCCccEEEEeeCccccc
Q 012427 428 RAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 428 R~g~~g~~~~~~~~~~~~~ 446 (464)
|. ..|.|+.+++.++...
T Consensus 398 R~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 398 RV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred CC-CCcEEEEeCCHHHHHh
Confidence 99 7999999998876543
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=9.9e-28 Score=232.89 Aligned_cols=296 Identities=20% Similarity=0.217 Sum_probs=186.5
Q ss_pred EEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccc
Q 012427 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (464)
Q Consensus 73 li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 152 (464)
++.||||+|||.+++.++.+.+.. +.++||++|+++|+.|+++.+++.+ +.++..++++.+..++.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~----g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~------- 66 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL----GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL------- 66 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH-------
Confidence 478999999999987766555543 3479999999999999999998764 56788888887655442
Q ss_pred cccccccCCchhHHHhhhc-CCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHh---hhhhHHHHHHhcccc
Q 012427 153 KLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSD 228 (464)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~-~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~---~~~~~~~~~~~~~~~ 228 (464)
+.|..+.. ..+|+|+|+..+. ..+.++++|||||+|...-.. .....+.+......
T Consensus 67 -----------~~~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~- 126 (505)
T TIGR00595 67 -----------QAWRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK- 126 (505)
T ss_pred -----------HHHHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-
Confidence 33344444 4799999987652 246789999999999764221 11111111110000
Q ss_pred ccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccc
Q 012427 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308 (464)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (464)
....+++++|||+...........................+. +.
T Consensus 127 -----------------------------------~~~~~vil~SATPsles~~~~~~g~~~~~~l~~r~~~~~~p~-v~ 170 (505)
T TIGR00595 127 -----------------------------------KFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPPE-VK 170 (505)
T ss_pred -----------------------------------hcCCCEEEEeCCCCHHHHHHHhcCCeEEeechhhhcCCCCCe-EE
Confidence 023378899999753332222111100000100000001110 00
Q ss_pred cceeeccC--CchHHHHHHHHH-hh-CCCeEEEEecChhh----------------------------------------
Q 012427 309 SYKLICES--KLKPLYLVALLQ-SL-GEEKCIVFTSSVES---------------------------------------- 344 (464)
Q Consensus 309 ~~~~~~~~--~~~~~~l~~~l~-~~-~~~~~lVf~~s~~~---------------------------------------- 344 (464)
........ ..-...+.+.++ .. .++++|||++++..
T Consensus 171 vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~ 250 (505)
T TIGR00595 171 LIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQE 250 (505)
T ss_pred EEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcC
Confidence 00000000 011112333333 22 45689999766543
Q ss_pred --------------------HHHHHHHHhhcCccceeEeeccCcccHHHH--HHHHHHHhcCCeeEEEEcccccccCCCC
Q 012427 345 --------------------THRLCTLLNHFGELRIKIKEYSGLQRQSVR--SKTLKAFREGKIQVLVSSDAMTRGMDVE 402 (464)
Q Consensus 345 --------------------~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r--~~~~~~f~~~~~~iLi~t~~~~~Gidip 402 (464)
.+++.+.|++. .++.++..+|++++...+ +.+++.|++|+.+|||+|++++.|+|+|
T Consensus 251 ~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~-fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~ 329 (505)
T TIGR00595 251 PIPKTCPQCGSEDLVYKGYGTEQVEEELAKL-FPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFP 329 (505)
T ss_pred CCCCCCCCCCCCeeEeecccHHHHHHHHHhh-CCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCC
Confidence 36677777664 234788999999987655 8899999999999999999999999999
Q ss_pred CCCeEEEecCCC------------CcchhhhhhhhhhcCCCCccEEEEe
Q 012427 403 GVNNVVNYDKPA------------YIKTYIHRAGRTARAGQLGRCFTLL 439 (464)
Q Consensus 403 ~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~g~~g~~~~~~ 439 (464)
++++|++++... ....|.|++||+||.++.|.+++..
T Consensus 330 ~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 330 NVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred cccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 999988776542 1356899999999998899888554
No 89
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=2.9e-28 Score=213.47 Aligned_cols=340 Identities=20% Similarity=0.283 Sum_probs=237.8
Q ss_pred CCCCCCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 31 HLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 31 ~~~~l~~~i~~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
++| ++.+....+++ |....+||.|..++..... +.++++..|||.||+++|.+|++- .+.-+|+++|
T Consensus 75 ~fp-ws~e~~~ilk~~f~lekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpal~-------adg~alvi~p 142 (695)
T KOG0353|consen 75 DFP-WSDEAKDILKEQFHLEKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPALC-------ADGFALVICP 142 (695)
T ss_pred CCC-CchHHHHHHHHHhhHHhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhHHh-------cCCceEeech
Confidence 344 67777777765 6678999999999766654 999999999999999999999884 3447999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHh---
Q 012427 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH--- 186 (464)
Q Consensus 110 ~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~--- 186 (464)
.+.|++.+.-.++.+ |+....+....+....... .+..........++..||+++...
T Consensus 143 lislmedqil~lkql----gi~as~lnansske~~k~v---------------~~~i~nkdse~kliyvtpekiaksk~~ 203 (695)
T KOG0353|consen 143 LISLMEDQILQLKQL----GIDASMLNANSSKEEAKRV---------------EAAITNKDSEFKLIYVTPEKIAKSKKF 203 (695)
T ss_pred hHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHH---------------HHHHcCCCceeEEEEecHHHHHHHHHH
Confidence 999999888888877 5655555554433222100 111222234468999999987542
Q ss_pred hhcC-CCcCCCCccEEEEehhhHhhhHhhh--hhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCC
Q 012427 187 INAT-RGFTLEHLCYLVVDETDRLLREAYQ--AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (464)
Q Consensus 187 l~~~-~~~~~~~~~~iIvDE~H~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
+.+. +.+....+.+|-+||+|+-..++.. .... ++..+. .-
T Consensus 204 mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~-~l~ilk-----------------------------------rq 247 (695)
T KOG0353|consen 204 MNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYK-ALGILK-----------------------------------RQ 247 (695)
T ss_pred HHHHHHHhhcceeEEEeecceeehhhhCcccCcchH-HHHHHH-----------------------------------Hh
Confidence 1111 1234566889999999987554421 1111 111110 01
Q ss_pred CCceeeEEeeeeeecCccchhcc--cccCCeeeecCCccccCccccccceeeccCCchHHHH---HHHHH-hhCCCeEEE
Q 012427 264 YPRLVKMVLSATLTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL---VALLQ-SLGEEKCIV 337 (464)
Q Consensus 264 ~~~~~~i~~sat~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~l~-~~~~~~~lV 337 (464)
.+....+.+|||.......-... .+...+.+..+...+.+ .|.+...+......+ ..++. ...++..||
T Consensus 248 f~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl-----~yev~qkp~n~dd~~edi~k~i~~~f~gqsgii 322 (695)
T KOG0353|consen 248 FKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNL-----KYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGII 322 (695)
T ss_pred CCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCc-----eeEeeeCCCChHHHHHHHHHHhccccCCCcceE
Confidence 14446788998887665443332 22222333333322222 222223333333333 33332 346788999
Q ss_pred EecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcc
Q 012427 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (464)
Q Consensus 338 f~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~ 417 (464)
||-|+.+|+.++..|+.+| +....+|..|.+++|..+-..+..|+.+++|+|-.++.|+|-|+++.||+.+.|.|+.
T Consensus 323 yc~sq~d~ekva~alkn~g---i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksie 399 (695)
T KOG0353|consen 323 YCFSQKDCEKVAKALKNHG---IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIE 399 (695)
T ss_pred EEeccccHHHHHHHHHhcC---ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHH
Confidence 9999999999999999887 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh-------------------------------------------hhhhhhcCCCCccEEEEeeCcccc
Q 012427 418 TYIH-------------------------------------------RAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 418 ~~~Q-------------------------------------------~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
.|.| ..||+||.+.+..|+.++.-.+..
T Consensus 400 nyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 400 NYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIF 470 (695)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHH
Confidence 9999 679999999999999998655443
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=7.5e-27 Score=231.72 Aligned_cols=355 Identities=18% Similarity=0.214 Sum_probs=231.9
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.+++.|.-. .+.-.+.-++.++||+|||+++.+|++..+..+ ..++|+|||..||.|.++++..+...+|
T Consensus 82 ~~ydvQliG------g~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G----~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 82 RHFDVQLIG------GMVLHEGNIAEMRTGEGKTLVATLPAYLNAISG----RGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CcchHHHhh------hhhhccCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 566667322 222345559999999999999999999777653 2599999999999999999999999999
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HHhhhcCCCcCC-----CCccEEEE
Q 012427 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL-----EHLCYLVV 203 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~~l~~~~~~~~-----~~~~~iIv 203 (464)
+.+++++|+.+...+... -.++|+++||..| .+++...-.+.+ ..+.++|+
T Consensus 152 Ltv~~i~gg~~~~~r~~~-----------------------y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~Iv 208 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEA-----------------------YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIV 208 (896)
T ss_pred ceEEEEeCCCCHHHHHHH-----------------------hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEe
Confidence 999999998765544221 2479999999999 888776533333 57899999
Q ss_pred ehhhHhhhH----------------hhhhhHHHHHHhccccc--------------cc-cccccc-----cc------c-
Q 012427 204 DETDRLLRE----------------AYQAWLPTVLQLTRSDN--------------EN-RFSDAS-----TF------L- 240 (464)
Q Consensus 204 DE~H~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~-~~~~~~-----~~------~- 240 (464)
||||.++=+ .....+..+...+.... .. .+.+.+ .. +
T Consensus 209 DEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~ 288 (896)
T PRK13104 209 DEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLD 288 (896)
T ss_pred ccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccC
Confidence 999987321 12222233333222110 00 000000 00 0
Q ss_pred --ccccc---------------cchhhhccc----------cccccCC---------------------CCCC-------
Q 012427 241 --PSAFG---------------SLKTIRRCG----------VERGFKD---------------------KPYP------- 265 (464)
Q Consensus 241 --~~~~~---------------~~~~~~~~~----------~~~~~~~---------------------~~~~------- 265 (464)
...+. +...+.+.. +...+.. ....
T Consensus 289 ~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~A 368 (896)
T PRK13104 289 PGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLA 368 (896)
T ss_pred CcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeee
Confidence 00000 000000000 0000000 0000
Q ss_pred ----------ceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCC
Q 012427 266 ----------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEE 333 (464)
Q Consensus 266 ----------~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~ 333 (464)
..+.-+||+|......++...+-.+.+.++.... ....... ..+......|..++.+.+.. ..++
T Consensus 369 sIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp--~~R~d~~-d~v~~t~~~k~~av~~~i~~~~~~g~ 445 (896)
T PRK13104 369 SITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRS--MIRKDEA-DLVYLTQADKFQAIIEDVRECGVRKQ 445 (896)
T ss_pred eehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCC--cceecCC-CeEEcCHHHHHHHHHHHHHHHHhCCC
Confidence 1123466666644444444433333333332211 1111111 12333455566666666643 3688
Q ss_pred eEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCC-C---------
Q 012427 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE-G--------- 403 (464)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip-~--------- 403 (464)
++||||+|++.++.++++|.+.+ ++...+|+++...++..+.+.|+.| .|+|||+++++|+||. +
T Consensus 446 PVLVgt~Sie~sE~ls~~L~~~g---i~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~ 520 (896)
T PRK13104 446 PVLVGTVSIEASEFLSQLLKKEN---IKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLAN 520 (896)
T ss_pred CEEEEeCcHHHHHHHHHHHHHcC---CCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhc
Confidence 99999999999999999999887 8999999999999999999999999 4999999999999996 1
Q ss_pred --------------------------CC--eEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012427 404 --------------------------VN--NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 404 --------------------------~~--~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
+. +||....+.|.+.=-|..||+||.|.+|.+-+|++=+|.-
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 521 LPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred cccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 01 6888888899998999999999999999999888766543
No 91
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=8.1e-27 Score=238.54 Aligned_cols=365 Identities=19% Similarity=0.185 Sum_probs=221.3
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.|++||.+.+..++.....+.++|+...+|.|||++++..+ ..+........++|||||. .+..||.+++.++++ .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--V 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--C
Confidence 79999999998887666678899999999999999865443 3333322233469999997 566789999999986 4
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh
Q 012427 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~ 209 (464)
+++..++|............ ......+|+|+||+.+.+...... --.+++||+||||++
T Consensus 245 l~v~~~~G~~~eR~~~~~~~------------------~~~~~~dVvITSYe~l~~e~~~L~---k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREEL------------------LVAGKFDVCVTSFEMAIKEKTALK---RFSWRYIIIDEAHRI 303 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHH------------------hcccCCCcceecHHHHHHHHHHhc---cCCCCEEEEcCcccc
Confidence 67777777654322211100 012347999999999876543322 235889999999998
Q ss_pred hhHhhhhhHHHHHHhcc---------cccccccccc----ccccccccccchhhhcc----------------------c
Q 012427 210 LREAYQAWLPTVLQLTR---------SDNENRFSDA----STFLPSAFGSLKTIRRC----------------------G 254 (464)
Q Consensus 210 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~~~----------------------~ 254 (464)
-+.... +...+..+. ++.++...+. ....|..++....+... .
T Consensus 304 KN~~Sk--lskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf 381 (1033)
T PLN03142 304 KNENSL--LSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPF 381 (1033)
T ss_pred CCHHHH--HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHH
Confidence 654321 222222222 2222211111 11112222211110000 0
Q ss_pred ccc----ccCCCCCCceeeEEeeeeeecCccchhcc---------------------------cccCCeeeecCCccccC
Q 012427 255 VER----GFKDKPYPRLVKMVLSATLTQDPNKLAQL---------------------------DLHHPLFLTTGETRYKL 303 (464)
Q Consensus 255 ~~~----~~~~~~~~~~~~i~~sat~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~ 303 (464)
..+ ... ...|+.....+...+.+.-...... ...+|..+...... .
T Consensus 382 ~LRR~KsdV~-~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~--~ 458 (1033)
T PLN03142 382 LLRRLKSDVE-KGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPG--P 458 (1033)
T ss_pred HhhhhHHHHh-hhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhccccc--C
Confidence 000 000 0011111111111111000000000 00011111000000 0
Q ss_pred ccccccceeeccCCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHH
Q 012427 304 PERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (464)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 381 (464)
+ ............|...+..++... .+.++|||+.....+..+.++|...+ +.+..++|+++..+|..+++.|
T Consensus 459 ~--~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g---~~y~rIdGsts~~eRq~~Id~F 533 (1033)
T PLN03142 459 P--YTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRG---YQYCRIDGNTGGEDRDASIDAF 533 (1033)
T ss_pred c--ccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHh
Confidence 0 000001123446777777777654 56799999999999999999998766 8889999999999999999999
Q ss_pred hcC---CeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccE--EEEeeCcccccchh
Q 012427 382 REG---KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKDEKKGAIG 449 (464)
Q Consensus 382 ~~~---~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~~~~~~ 449 (464)
... ..-+|++|.+.+.|+|++.+++||+++++|++....|++||++|.|+...| +.++..+..++.+.
T Consensus 534 n~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIl 606 (1033)
T PLN03142 534 NKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVI 606 (1033)
T ss_pred ccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHH
Confidence 753 245789999999999999999999999999999999999999999987655 45667766666554
No 92
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=5.2e-27 Score=243.41 Aligned_cols=306 Identities=17% Similarity=0.208 Sum_probs=200.8
Q ss_pred HhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCC
Q 012427 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS 139 (464)
Q Consensus 60 ~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~ 139 (464)
+.+++.+..++.++++|+||||||...-..+++ .+.....++++.-|++--+...++.+.+.. |.+++...|..
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle---~~~~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~VGY~ 146 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLE---LGRGSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHH---cCCCCCceEecCCccHHHHHHHHHHHHHHh---CCCcceEEeeE
Confidence 344555556788999999999999964322222 111112244555588877777776665542 34444444432
Q ss_pred c-hhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH-hhhHhhhh-
Q 012427 140 S-IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQA- 216 (464)
Q Consensus 140 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~-~~~~~~~~- 216 (464)
. .... ...+..|.++|++.|.+.+... ..++++++||+||+|. .++..+.-
T Consensus 147 vR~~~~------------------------~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~ 200 (1283)
T TIGR01967 147 VRFHDQ------------------------VSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLG 200 (1283)
T ss_pred EcCCcc------------------------cCCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHH
Confidence 1 1111 2244589999999999887653 3478899999999994 55544432
Q ss_pred hHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeec
Q 012427 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (464)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 296 (464)
.+..++... +..+.+++|||+. ...+...+...+++...
T Consensus 201 lLk~il~~r---------------------------------------pdLKlIlmSATld--~~~fa~~F~~apvI~V~ 239 (1283)
T TIGR01967 201 YLKQLLPRR---------------------------------------PDLKIIITSATID--PERFSRHFNNAPIIEVS 239 (1283)
T ss_pred HHHHHHhhC---------------------------------------CCCeEEEEeCCcC--HHHHHHHhcCCCEEEEC
Confidence 234443221 2348899999994 33444444444443222
Q ss_pred CCccccCccccccceeeccC------CchHHHHHHHHH---hhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccC
Q 012427 297 GETRYKLPERLESYKLICES------KLKPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367 (464)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~---~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~ 367 (464)
+ ..+.. ...+..... ......+...+. ....+.+|||+++..+++.+++.|.+.+..+..+..+||
T Consensus 240 G-r~~PV----ev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg 314 (1283)
T TIGR01967 240 G-RTYPV----EVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYA 314 (1283)
T ss_pred C-Ccccc----eeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccC
Confidence 2 21111 111111111 112222322232 224678999999999999999999876544577899999
Q ss_pred cccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC------------------CCcchhhhhhhhhhcC
Q 012427 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------------------AYIKTYIHRAGRTARA 429 (464)
Q Consensus 368 ~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~ 429 (464)
+++.++|..+++.+ +..+||+||++++.|+|+|++++||.++.+ .|..++.||.||+||.
T Consensus 315 ~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~ 392 (1283)
T TIGR01967 315 RLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 392 (1283)
T ss_pred CCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCC
Confidence 99999999886643 346999999999999999999999998843 3556899999999999
Q ss_pred CCCccEEEEeeCccccc
Q 012427 430 GQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 430 g~~g~~~~~~~~~~~~~ 446 (464)
+ .|.|+.+++.++...
T Consensus 393 ~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 393 A-PGICIRLYSEEDFNS 408 (1283)
T ss_pred C-CceEEEecCHHHHHh
Confidence 6 999999998876544
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.3e-26 Score=229.77 Aligned_cols=357 Identities=18% Similarity=0.169 Sum_probs=233.3
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
+|. .|++.|.-.--.+ .+.-+..+.||+|||+++.+|++-..+.+ ..+-|+|||..||.|.++++..+.
T Consensus 78 lg~-~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~l~aL~G----~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAYLNALTG----KGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHHHHHHcC----CCEEEEecCHHHHHHHHHHHHHHH
Confidence 454 7888885442221 33349999999999999999986444433 258899999999999999999999
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HHhhhcCCC-----cCCCCcc
Q 012427 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~~l~~~~~-----~~~~~~~ 199 (464)
..+|++++++.|+.+...+... -.++|+++|+..| .+.++..-. .....+.
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~-----------------------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~ 203 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREA-----------------------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLN 203 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHh-----------------------cCCCeEEECCcchhhhhhhcccccchhhhcccccc
Confidence 9999999999998776554222 2379999999999 777765432 2367789
Q ss_pred EEEEehhhHhhhH----------------hhhhhHHHHHHhcccccc---------------------------ccccc-
Q 012427 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNE---------------------------NRFSD- 235 (464)
Q Consensus 200 ~iIvDE~H~~~~~----------------~~~~~~~~~~~~~~~~~~---------------------------~~~~~- 235 (464)
++|+||||.++=+ .....+..+...+..... +.++.
T Consensus 204 ~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~ 283 (830)
T PRK12904 204 YAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPE 283 (830)
T ss_pred eEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChh
Confidence 9999999986311 122223333332211100 00000
Q ss_pred ----------------------------------------------cccccccccccchhhhccccccccC-------CC
Q 012427 236 ----------------------------------------------ASTFLPSAFGSLKTIRRCGVERGFK-------DK 262 (464)
Q Consensus 236 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 262 (464)
|+.-+..++.+.+.+.-........ ..
T Consensus 284 ~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr 363 (830)
T PRK12904 284 NIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFR 363 (830)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHH
Confidence 0000000000000000000000000 00
Q ss_pred CCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCCeEEEEec
Q 012427 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTS 340 (464)
Q Consensus 263 ~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~ 340 (464)
.+ .+..+||+|......++...+-.+.+.+++.. +...... ...+......|...+...+.. ..++++||||.
T Consensus 364 ~Y--~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnk--p~~r~d~-~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~ 438 (830)
T PRK12904 364 MY--EKLAGMTGTADTEAEEFREIYNLDVVVIPTNR--PMIRIDH-PDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTV 438 (830)
T ss_pred hc--chhcccCCCcHHHHHHHHHHhCCCEEEcCCCC--CeeeeeC-CCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11 13456777775433333333333333333211 1111111 112333555677788887755 56789999999
Q ss_pred ChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCC----------------
Q 012427 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV---------------- 404 (464)
Q Consensus 341 s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~---------------- 404 (464)
|++.++.+++.|.+.+ ++...+|+. ..+|++.+..|..+...|+|||+++++|+||+=-
T Consensus 439 Si~~se~Ls~~L~~~g---i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~ 513 (830)
T PRK12904 439 SIEKSELLSKLLKKAG---IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETE 513 (830)
T ss_pred cHHHHHHHHHHHHHCC---CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhh
Confidence 9999999999999877 888999996 6688999999999999999999999999999732
Q ss_pred --------------------C--eEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012427 405 --------------------N--NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 405 --------------------~--~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
. |||....+.|.+.--|..||+||.|.+|.+-.|++=+|.-.
T Consensus 514 ~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 514 EQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred HHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 1 68888889999999999999999999999999987765443
No 94
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.95 E-value=2e-26 Score=200.74 Aligned_cols=201 Identities=31% Similarity=0.514 Sum_probs=164.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc-cCCccEEEE
Q 012427 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVV 107 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~-~~~~~~lil 107 (464)
|++++ +++.+.+.+.++|+..|+++|.++++.+.+ ++++++.+|||+|||++++++++..+.... ..+++++|+
T Consensus 1 ~~~~~-~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii 75 (203)
T cd00268 1 FEELG-LSPELLRGIYALGFEKPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALIL 75 (203)
T ss_pred CCcCC-CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 34554 999999999999999999999999988876 899999999999999999999999888752 245689999
Q ss_pred cccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhh
Q 012427 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (464)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l 187 (464)
+|+++|+.|+.+.+..+....++.+..++|+.+..+.... ...+++|+|+||+.+.+.+
T Consensus 76 ~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~iiv~T~~~l~~~l 134 (203)
T cd00268 76 APTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---------------------LKRGPHIVVATPGRLLDLL 134 (203)
T ss_pred cCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEEChHHHHHHH
Confidence 9999999999999999987778899999998765443221 2346799999999999988
Q ss_pred hcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCce
Q 012427 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (464)
Q Consensus 188 ~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
.+.. ..+.+++++|+||+|++.+.++...+..+...+.. ..
T Consensus 135 ~~~~-~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~--------------------------------------~~ 175 (203)
T cd00268 135 ERGK-LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK--------------------------------------DR 175 (203)
T ss_pred HcCC-CChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc--------------------------------------cc
Confidence 8655 67788999999999999877777777777665532 33
Q ss_pred eeEEeeeeeecCccchhcccccCCeee
Q 012427 268 VKMVLSATLTQDPNKLAQLDLHHPLFL 294 (464)
Q Consensus 268 ~~i~~sat~~~~~~~~~~~~~~~~~~~ 294 (464)
+.+++|||+++...........+++.+
T Consensus 176 ~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 176 QTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred EEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 889999999877766666666665543
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=4.3e-26 Score=225.23 Aligned_cols=357 Identities=19% Similarity=0.215 Sum_probs=227.0
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
.|. .|++.|.-.--.+ .+.-++.+.||+|||+++.++++...+.+ ..+-++||+..||.|.++++.++.
T Consensus 77 ~g~-~~~dvQlig~l~l------~~G~iaEm~TGEGKTLvA~l~a~l~al~G----~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVL------HEGNIAEMKTGEGKTLTATLPVYLNALTG----KGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHHHHH------hcCCcccccCCCCCcHHHHHHHHHHHHcC----CCeEEEeccHHHHHhhHHHHHHHH
Confidence 454 7888885542222 23339999999999999998888777764 369999999999999999999999
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHH-HhhhcC-----CCcCCCCcc
Q 012427 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-DHINAT-----RGFTLEHLC 199 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~-~~l~~~-----~~~~~~~~~ 199 (464)
..+|++++++.++.+...+... -.++|+.+|...|. +.|+.. .......+.
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~-----------------------y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~ 202 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAA-----------------------YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLN 202 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHH-----------------------hcCCCeecCCccccccchhhccccchhhhhccCcc
Confidence 9999999999988665544222 34699999987663 223221 112245688
Q ss_pred EEEEehhhHhhhH----------------hhhhhHHHHHHhccccc----------------------------------
Q 012427 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN---------------------------------- 229 (464)
Q Consensus 200 ~iIvDE~H~~~~~----------------~~~~~~~~~~~~~~~~~---------------------------------- 229 (464)
+.||||+|.++=+ .....+..+...+....
T Consensus 203 ~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~ 282 (796)
T PRK12906 203 YAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEK 282 (796)
T ss_pred eeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHH
Confidence 9999999975211 11222222222221110
Q ss_pred ----cccccccccccccc----cccchhhhcc-------c---cccccCC---------------------CCC------
Q 012427 230 ----ENRFSDASTFLPSA----FGSLKTIRRC-------G---VERGFKD---------------------KPY------ 264 (464)
Q Consensus 230 ----~~~~~~~~~~~~~~----~~~~~~~~~~-------~---~~~~~~~---------------------~~~------ 264 (464)
.+.++.....+..+ +.+...+.+. + +...+.. ...
T Consensus 283 ~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t 362 (796)
T PRK12906 283 LFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQT 362 (796)
T ss_pred HcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCcee
Confidence 00000000000000 0000000000 0 0000000 000
Q ss_pred -----------CceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhh--C
Q 012427 265 -----------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--G 331 (464)
Q Consensus 265 -----------~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~ 331 (464)
...+..++|+|......++...+-.+.+.++... +....... -........|...+.+.+... .
T Consensus 363 ~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnk--p~~r~d~~-d~i~~t~~~K~~al~~~i~~~~~~ 439 (796)
T PRK12906 363 LATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNR--PVIRKDSP-DLLYPTLDSKFNAVVKEIKERHAK 439 (796)
T ss_pred eeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCC--CeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhC
Confidence 0113456777764433333332222222222211 11111111 122334456777777777543 7
Q ss_pred CCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCC---CCC---
Q 012427 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---GVN--- 405 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip---~~~--- 405 (464)
+.++||||+|++.++.+++.|.+.+ ++...+|+++...++..+.++++.|. |+|||+++++|.||+ ++.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~g---i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEAG---IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCC---CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhC
Confidence 8899999999999999999999887 88899999998877777777777765 999999999999995 788
Q ss_pred --eEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012427 406 --NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 406 --~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
+||.+..|.|.+.+.|++||+||.|.+|.+..|++-+|.
T Consensus 515 GLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred CcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 999999999999999999999999999999999987744
No 96
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.94 E-value=4.5e-25 Score=229.10 Aligned_cols=416 Identities=18% Similarity=0.177 Sum_probs=239.0
Q ss_pred CCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 012427 33 PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (464)
Q Consensus 33 ~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~ 112 (464)
+.+++.+.+.+...|| ++|+.|.+++..+.+.+..++++++.||||+|||++|++|++..... +.+++|.|||++
T Consensus 229 ~~~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~----~~~vvi~t~t~~ 303 (850)
T TIGR01407 229 NTLSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT----EKPVVISTNTKV 303 (850)
T ss_pred ccccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC----CCeEEEEeCcHH
Confidence 4567788888888898 48999999999998888889999999999999999999999876652 337999999999
Q ss_pred HHHHHHH-HHHHhccccC--ceEEEeecCCchhHH--HHHhhccc--------------------------c--------
Q 012427 113 LALQVKD-VFAAIAPAVG--LSVGLAVGQSSIADE--ISELIKRP--------------------------K-------- 153 (464)
Q Consensus 113 L~~q~~~-~~~~~~~~~~--~~v~~~~g~~~~~~~--~~~~~~~~--------------------------~-------- 153 (464)
|++|+.. .+..+....+ +++..+.|..++... ........ .
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 9999865 5665554444 888888888765210 00000000 0
Q ss_pred -----cccc---------ccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHh------
Q 012427 154 -----LEAG---------ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA------ 213 (464)
Q Consensus 154 -----~~~~---------~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~------ 213 (464)
..+. ...+.-.........++|+|+++..|...+.....+ +.+...+||||||++.+..
T Consensus 384 ~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~i-lp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 384 MFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPEL-FPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccccc-CCCCCEEEEECcchHHHHHHHHhcc
Confidence 0000 001122333445677899999999988766443322 3456899999999985321
Q ss_pred ------hhhhHHHHHH------------hccc---cccccc-------------------------------cccc----
Q 012427 214 ------YQAWLPTVLQ------------LTRS---DNENRF-------------------------------SDAS---- 237 (464)
Q Consensus 214 ------~~~~~~~~~~------------~~~~---~~~~~~-------------------------------~~~~---- 237 (464)
+...+.++.. .... .....+ ....
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 1111111100 0000 000000 0000
Q ss_pred ----------ccc----ccccccchh-------hhcccccc--ccCCCC-CCceeeEEeeeeeecC--ccch-hcccccC
Q 012427 238 ----------TFL----PSAFGSLKT-------IRRCGVER--GFKDKP-YPRLVKMVLSATLTQD--PNKL-AQLDLHH 290 (464)
Q Consensus 238 ----------~~~----~~~~~~~~~-------~~~~~~~~--~~~~~~-~~~~~~i~~sat~~~~--~~~~-~~~~~~~ 290 (464)
.++ ..+...... +....... ...... ......|++|||+... .... ...++.+
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 000 000000000 00000000 000001 1224678999999743 2222 2233332
Q ss_pred CeeeecCCccccCccccccceeec-c-----CCc-hHHHHHHHH---HhhCCCeEEEEecChhhHHHHHHHHhhcCc-cc
Q 012427 291 PLFLTTGETRYKLPERLESYKLIC-E-----SKL-KPLYLVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LR 359 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~-~~~~l~~~l---~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~ 359 (464)
........+.+...+....+.... + ... -...+...+ ....++++|||++|.+..+.++..|..... .+
T Consensus 623 ~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~ 702 (850)
T TIGR01407 623 VHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEG 702 (850)
T ss_pred cccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccC
Confidence 211111111111111111111110 0 001 111222222 223567999999999999999999975211 12
Q ss_pred eeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCC--CeEEEecCCCC----------------------
Q 012427 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV--NNVVNYDKPAY---------------------- 415 (464)
Q Consensus 360 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~--~~vi~~~~~~s---------------------- 415 (464)
+.+.. .+.. ..|..++++|+.++..||++|+.+++|||+|+. .+||+.+.|..
T Consensus 703 ~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f 779 (850)
T TIGR01407 703 YEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPF 779 (850)
T ss_pred ceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCch
Confidence 33322 2222 468899999999999999999999999999974 47888886621
Q ss_pred --------cchhhhhhhhhhcCCCCccEEEEeeCcccccchhhccccccc
Q 012427 416 --------IKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAIGRSLFHQSR 457 (464)
Q Consensus 416 --------~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 457 (464)
...+.|.+||..|...+.-+++++|.+-....|++.+....+
T Consensus 780 ~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 780 YDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred HHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 234579999999998777777788877777777666555544
No 97
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.8e-25 Score=203.37 Aligned_cols=169 Identities=20% Similarity=0.210 Sum_probs=130.7
Q ss_pred ceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCCeEEEEecChh
Q 012427 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE 343 (464)
Q Consensus 266 ~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~s~~ 343 (464)
..|.+..|||+...........+...++.+.+.-++.. ...+...+..-+...++. ..+.++||.+-+.+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~i--------evRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPEI--------EVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCCCCce--------eeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 34889999999765555444333333333332221111 122334444444444443 35789999999999
Q ss_pred hHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC-----CCcch
Q 012427 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-----AYIKT 418 (464)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~-----~s~~~ 418 (464)
+|+.+.++|.+.| +++.++|++...-+|.++++.++.|++++||+.+.+.+|+|+|.|+.|.+++.. .|-.+
T Consensus 458 mAEdLT~Yl~e~g---ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~S 534 (663)
T COG0556 458 MAEDLTEYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 534 (663)
T ss_pred HHHHHHHHHHhcC---ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccch
Confidence 9999999999988 999999999999999999999999999999999999999999999999998754 78889
Q ss_pred hhhhhhhhhcCCCCccEEEEeeCccccc
Q 012427 419 YIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 419 ~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
++|.+|||.|+ -+|.++++.+.-+..+
T Consensus 535 LIQtIGRAARN-~~GkvIlYAD~iT~sM 561 (663)
T COG0556 535 LIQTIGRAARN-VNGKVILYADKITDSM 561 (663)
T ss_pred HHHHHHHHhhc-cCCeEEEEchhhhHHH
Confidence 99999999998 6999998887765544
No 98
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.94 E-value=4.7e-25 Score=212.79 Aligned_cols=353 Identities=18% Similarity=0.172 Sum_probs=213.5
Q ss_pred CccchhhHHhHHhhhCCCCCCC-CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~-~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (464)
..+|.||..|+..+.+++..|+ .+++++.||+|||.+++. ++..+.+.+ ...++|+|+-++.|++|.+.++..+.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~-~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSG-WVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcc-hhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 4799999999999999998884 599999999999999654 555666553 4558999999999999999999998775
Q ss_pred cCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcC----CCcCCCCccEEEE
Q 012427 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVV 203 (464)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~----~~~~~~~~~~iIv 203 (464)
+-.+..+.+... ...++|.++|++++...+... ..+....|++||+
T Consensus 242 -~~~~n~i~~~~~-----------------------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvI 291 (875)
T COG4096 242 -GTKMNKIEDKKG-----------------------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVI 291 (875)
T ss_pred -ccceeeeecccC-----------------------------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEe
Confidence 333333333221 123589999999998877654 2244666999999
Q ss_pred ehhhHhhhHhhhhhHHHHHH----hccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecC
Q 012427 204 DETDRLLREAYQAWLPTVLQ----LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (464)
Q Consensus 204 DE~H~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 279 (464)
||||+-+...+...+..+-. +++.+....-.....++. -.....|.+..+..++...+...+-.--.....
T Consensus 292 DEaHRgi~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-----g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~ 366 (875)
T COG4096 292 DEAHRGIYSEWSSILDYFDAATQGLTATPKETIDRSTYGFFN-----GEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLD 366 (875)
T ss_pred chhhhhHHhhhHHHHHHHHHHHHhhccCcccccccccccccC-----CCcceeecHHHHhhccccCCCCceEEeeecccc
Confidence 99999887776655443332 222222211112222221 122233334444444433222222221111100
Q ss_pred ---ccchh-cccccCCeeeecCCccccCccccccceeeccCCchHHH----HHHHHHh--hC--CCeEEEEecChhhHHH
Q 012427 280 ---PNKLA-QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY----LVALLQS--LG--EEKCIVFTSSVESTHR 347 (464)
Q Consensus 280 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~--~~--~~~~lVf~~s~~~~~~ 347 (464)
..... +.......+.. +....+... +.....-...... +.+.+.. .. .+|+||||.+..+|+.
T Consensus 367 G~~~~~~serek~~g~~i~~----dd~~~~~~d-~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~ 441 (875)
T COG4096 367 GWKPDAGSEREKLQGEAIDE----DDQNFEARD-FDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAER 441 (875)
T ss_pred CcCcCccchhhhhhccccCc----ccccccccc-cchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHH
Confidence 00000 00000000000 000111110 0000111111222 2333333 11 4699999999999999
Q ss_pred HHHHHhhcCc-c-ceeEeeccCcccHHHHHHHHHHHhcCC--eeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhh
Q 012427 348 LCTLLNHFGE-L-RIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423 (464)
Q Consensus 348 l~~~l~~~~~-~-~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~ 423 (464)
+.+.|..... . +--+..+.++-. +-...++.|..++ -+|.|+++++..|+|+|.|.++|++..-.|...|+||+
T Consensus 442 i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMv 519 (875)
T COG4096 442 IREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMV 519 (875)
T ss_pred HHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHh
Confidence 9999976421 1 123444555543 3346677776533 47999999999999999999999999999999999999
Q ss_pred hhhhcC-------CCCccEEEEeeCcccc
Q 012427 424 GRTARA-------GQLGRCFTLLHKDEKK 445 (464)
Q Consensus 424 GR~~R~-------g~~g~~~~~~~~~~~~ 445 (464)
||+-|. ++++..+.+++--+..
T Consensus 520 GRGTRl~~~~~~~~~dK~~F~ifDf~~~~ 548 (875)
T COG4096 520 GRGTRLCPDLGGPEQDKEFFTIFDFVDNT 548 (875)
T ss_pred cCccccCccccCccccceeEEEEEhhhhh
Confidence 999995 2445666666554444
No 99
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.9e-24 Score=214.37 Aligned_cols=144 Identities=18% Similarity=0.265 Sum_probs=118.9
Q ss_pred CCHHHHHHHH-----HCCCCcc---chhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEE
Q 012427 35 LDPRLKVALQ-----NMGISSL---FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 106 (464)
Q Consensus 35 l~~~i~~~~~-----~~~~~~l---~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~li 106 (464)
+..++.+.+. .+||..| +|+|.+++..+.. ++++++.++||+|||++|++|++..+..+. .++|
T Consensus 69 l~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l----~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~----~v~I 140 (970)
T PRK12899 69 VVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAM----HKGFITEMQTGEGKTLTAVMPLYLNALTGK----PVHL 140 (970)
T ss_pred CCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhc----CCCeEEEeCCCCChHHHHHHHHHHHHhhcC----CeEE
Confidence 6667777766 5789888 9999998666554 889999999999999999999998776532 4899
Q ss_pred EcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HH
Q 012427 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MD 185 (464)
Q Consensus 107 l~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~ 185 (464)
|+||+.||.|.++++..+...+|+++.+++|+.+...+... -+++|+|+||++| .+
T Consensus 141 VTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~-----------------------y~~DIVygTPgRLgfD 197 (970)
T PRK12899 141 VTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI-----------------------YQCDVVYGTASEFGFD 197 (970)
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH-----------------------cCCCEEEECCChhHHH
Confidence 99999999999999999999999999999999887665322 1479999999999 88
Q ss_pred hhhcCCCcCC-------CCccEEEEehhhHhh
Q 012427 186 HINATRGFTL-------EHLCYLVVDETDRLL 210 (464)
Q Consensus 186 ~l~~~~~~~~-------~~~~~iIvDE~H~~~ 210 (464)
++.... +.+ ..+.++|+||||.++
T Consensus 198 yLrd~~-~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 198 YLRDNS-IATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HhhCCC-CCcCHHHhhcccccEEEEechhhhh
Confidence 887642 333 356899999999874
No 100
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=5.3e-25 Score=213.33 Aligned_cols=325 Identities=17% Similarity=0.145 Sum_probs=219.2
Q ss_pred CCHHHHHHHH----HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012427 35 LDPRLKVALQ----NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 35 l~~~i~~~~~----~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
+..+....+. .++| +|-.+|++|+-++. +|.++++.|+|.+|||+++-.++.-.-. ...|+++-+|-
T Consensus 279 ~~~df~~lVpe~a~~~pF-elD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAialaq~----h~TR~iYTSPI 349 (1248)
T KOG0947|consen 279 LVEDFYQLVPEMALIYPF-ELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIALAQK----HMTRTIYTSPI 349 (1248)
T ss_pred chHHHHHhchhHHhhCCC-CccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHHHHh----hccceEecchh
Confidence 3444444443 3577 78999999966654 5999999999999999986654432222 34489999999
Q ss_pred HHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcC
Q 012427 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190 (464)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~ 190 (464)
++|..|-++.|+.-+.. ++++.|+..+ ...+..+|+|.+.|-+.+.++
T Consensus 350 KALSNQKfRDFk~tF~D----vgLlTGDvqi----------------------------nPeAsCLIMTTEILRsMLYrg 397 (1248)
T KOG0947|consen 350 KALSNQKFRDFKETFGD----VGLLTGDVQI----------------------------NPEASCLIMTTEILRSMLYRG 397 (1248)
T ss_pred hhhccchHHHHHHhccc----cceeecceee----------------------------CCCcceEeehHHHHHHHHhcc
Confidence 99999988888876654 3377887653 344689999999999988876
Q ss_pred CCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeE
Q 012427 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (464)
Q Consensus 191 ~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (464)
..+ ++++..||+||+|.+-+...+-..++++-+++ +.+++|
T Consensus 398 adl-iRDvE~VIFDEVHYiND~eRGvVWEEViIMlP--------------------------------------~HV~~I 438 (1248)
T KOG0947|consen 398 ADL-IRDVEFVIFDEVHYINDVERGVVWEEVIIMLP--------------------------------------RHVNFI 438 (1248)
T ss_pred cch-hhccceEEEeeeeecccccccccceeeeeecc--------------------------------------ccceEE
Confidence 534 67899999999998866665555555555554 344778
Q ss_pred EeeeeeecCccchhccc-ccCCeeeecCC--------------------------------ccccCc-------------
Q 012427 271 VLSATLTQDPNKLAQLD-LHHPLFLTTGE--------------------------------TRYKLP------------- 304 (464)
Q Consensus 271 ~~sat~~~~~~~~~~~~-~~~~~~~~~~~--------------------------------~~~~~~------------- 304 (464)
++|||.++..+...|.+ .+...++-... ......
T Consensus 439 lLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~ 518 (1248)
T KOG0947|consen 439 LLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKS 518 (1248)
T ss_pred EEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccc
Confidence 88888876644433322 11111000000 000000
Q ss_pred -----ccc---------ccceee--cc--CCc---hHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCc------
Q 012427 305 -----ERL---------ESYKLI--CE--SKL---KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE------ 357 (464)
Q Consensus 305 -----~~~---------~~~~~~--~~--~~~---~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~------ 357 (464)
... ...... .. ... ....++..++...--+++|||=|++.|++.+++|...+.
T Consensus 519 ~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EK 598 (1248)
T KOG0947|consen 519 DARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEK 598 (1248)
T ss_pred cccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhH
Confidence 000 000000 00 001 133344445554555899999999999999999986321
Q ss_pred ------------------------------cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeE
Q 012427 358 ------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (464)
Q Consensus 358 ------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~v 407 (464)
..-.+++.|||+-+--++-+...|..|=+++|+||..++.|+|.|. .+|
T Consensus 599 seV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA-Rtv 677 (1248)
T KOG0947|consen 599 SEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA-RTV 677 (1248)
T ss_pred HHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc-eeE
Confidence 1124778999999999999999999999999999999999999995 666
Q ss_pred EEecCC---------CCcchhhhhhhhhhcCCCC--ccEEEEee
Q 012427 408 VNYDKP---------AYIKTYIHRAGRTARAGQL--GRCFTLLH 440 (464)
Q Consensus 408 i~~~~~---------~s~~~~~Q~~GR~~R~g~~--g~~~~~~~ 440 (464)
|+.+.. -.+..|.|+.|||||.|-+ |.++++..
T Consensus 678 VF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 678 VFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred EeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 665543 3478999999999999954 45554443
No 101
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.93 E-value=2.1e-24 Score=217.29 Aligned_cols=336 Identities=16% Similarity=0.133 Sum_probs=194.9
Q ss_pred CHHHHHHHHHCCC----------CccchhhHHhHHhhhCCCCC------CCCEEEECCCCchhHHHhHHHHHHHHHhhcc
Q 012427 36 DPRLKVALQNMGI----------SSLFPVQVAVWQETIGPGLF------ERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (464)
Q Consensus 36 ~~~i~~~~~~~~~----------~~l~~~Q~~~~~~i~~~~~~------~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~ 99 (464)
++.++..+..+=+ ..++.+|.+++..+++++.. .+..+++++||||||++.+..+...+.. .
T Consensus 214 ~~~ll~~i~~~~~~~~~~~~~~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~--~ 291 (667)
T TIGR00348 214 KERLLDFIRNFIIFDKDTGLVTKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL--L 291 (667)
T ss_pred HHHHHHHHHheEEEECCCCceeeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh--c
Confidence 5566666654211 24889999999988877654 3579999999999999977655444322 3
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEe
Q 012427 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~ 178 (464)
+.+++|||||+.+|..|+.+.|..+.... ..+..+. . .+...+. ....|+|+
T Consensus 292 ~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~------~~~~~s~-~--------------------~L~~~l~~~~~~iivt 344 (667)
T TIGR00348 292 KNPKVFFVVDRRELDYQLMKEFQSLQKDC------AERIESI-A--------------------ELKRLLEKDDGGIIIT 344 (667)
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhhCCCC------CcccCCH-H--------------------HHHHHHhCCCCCEEEE
Confidence 56689999999999999999999885311 0111111 1 1111122 23589999
Q ss_pred CchHHHHhhhcC-CCcCCCCc-cEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccc
Q 012427 179 TPGRLMDHINAT-RGFTLEHL-CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (464)
Q Consensus 179 T~~~l~~~l~~~-~~~~~~~~-~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
|.+++.+.+... ..+..... .+||+||||+.....+...+...+
T Consensus 345 TiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~~~~---------------------------------- 390 (667)
T TIGR00348 345 TIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLKKAL---------------------------------- 390 (667)
T ss_pred EhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHHhhC----------------------------------
Confidence 999998643321 11211112 389999999886655554443322
Q ss_pred cccCCCCCCceeeEEeeeeeecCccchh---------------------cccccCCeeeecCCccccC-----ccccccc
Q 012427 257 RGFKDKPYPRLVKMVLSATLTQDPNKLA---------------------QLDLHHPLFLTTGETRYKL-----PERLESY 310 (464)
Q Consensus 257 ~~~~~~~~~~~~~i~~sat~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 310 (464)
+....+++||||........ +.+..-++.+......... ......+
T Consensus 391 --------p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~ 462 (667)
T TIGR00348 391 --------KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEI 462 (667)
T ss_pred --------CCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHH
Confidence 22256777777743211100 0000011111110000000 0000000
Q ss_pred eeeccC-----------------------CchHHHHH-HHHHh----h--CCCeEEEEecChhhHHHHHHHHhhcCcc--
Q 012427 311 KLICES-----------------------KLKPLYLV-ALLQS----L--GEEKCIVFTSSVESTHRLCTLLNHFGEL-- 358 (464)
Q Consensus 311 ~~~~~~-----------------------~~~~~~l~-~~l~~----~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~-- 358 (464)
....+. ......+. .+++. . .+++++|+|.++.+|..+.+.|.+....
T Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~ 542 (667)
T TIGR00348 463 FELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF 542 (667)
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc
Confidence 000000 00001111 11111 1 2479999999999999999998764321
Q ss_pred ceeEeeccCcccHH---------------------HHHHHHHHHhc-CCeeEEEEcccccccCCCCCCCeEEEecCCCCc
Q 012427 359 RIKIKEYSGLQRQS---------------------VRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416 (464)
Q Consensus 359 ~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~ 416 (464)
+.....+++..+.. ....++++|+. ++.+|||+++++.+|+|.|.++++++..+..+.
T Consensus 543 ~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h 622 (667)
T TIGR00348 543 EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH 622 (667)
T ss_pred CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc
Confidence 12344455543322 23478888975 678999999999999999999999888887765
Q ss_pred chhhhhhhhhhc-CCCCccEEEEeeCcc
Q 012427 417 KTYIHRAGRTAR-AGQLGRCFTLLHKDE 443 (464)
Q Consensus 417 ~~~~Q~~GR~~R-~g~~g~~~~~~~~~~ 443 (464)
.++|++||+.| .+..+....++|-.+
T Consensus 623 -~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 623 -GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred -HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 58999999999 343333333443333
No 102
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.8e-25 Score=201.31 Aligned_cols=329 Identities=20% Similarity=0.198 Sum_probs=226.2
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
..+||||...+..++.+- +.++.++..|+|+|||++.+.++.. -..++|+|+.+..-++||...+..|....
T Consensus 301 t~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~t-------ikK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAACT-------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeeee-------ecccEEEEecCccCHHHHHHHHHhhcccC
Confidence 369999999988887521 1267999999999999998876663 23369999999999999999999998766
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCC-------cCCCCccEE
Q 012427 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-------FTLEHLCYL 201 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~-------~~~~~~~~i 201 (464)
+-.++.+..+.+ +....++.|+|+||.++...-.+... +.-..++++
T Consensus 373 d~~i~rFTsd~K--------------------------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGll 426 (776)
T KOG1123|consen 373 DDQICRFTSDAK--------------------------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLL 426 (776)
T ss_pred ccceEEeecccc--------------------------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeE
Confidence 666666666543 22346789999999877543322211 124568999
Q ss_pred EEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCcc
Q 012427 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (464)
Q Consensus 202 IvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 281 (464)
++||+|.+.+..|+..+.-+.... .+.+|||+....+
T Consensus 427 llDEVHvvPA~MFRRVlsiv~aHc-------------------------------------------KLGLTATLvREDd 463 (776)
T KOG1123|consen 427 LLDEVHVVPAKMFRRVLSIVQAHC-------------------------------------------KLGLTATLVREDD 463 (776)
T ss_pred EeehhccchHHHHHHHHHHHHHHh-------------------------------------------hccceeEEeeccc
Confidence 999999998888887766555432 3556777654433
Q ss_pred chhcc-cccCCeeeecCC--------------------------ccccCccccccceeeccCCchHHHHHHHHH--hhCC
Q 012427 282 KLAQL-DLHHPLFLTTGE--------------------------TRYKLPERLESYKLICESKLKPLYLVALLQ--SLGE 332 (464)
Q Consensus 282 ~~~~~-~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~ 332 (464)
....+ ++-.|.++...= .+...........+......|...-.-+++ ..++
T Consensus 464 KI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~Rg 543 (776)
T KOG1123|consen 464 KITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRG 543 (776)
T ss_pred cccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcC
Confidence 33322 222222221110 000000011112222223333333333333 2378
Q ss_pred CeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcC-CeeEEEEcccccccCCCCCCCeEEEec
Q 012427 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (464)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~iLi~t~~~~~Gidip~~~~vi~~~ 411 (464)
.|+|||..++-...+++-.|.+ -.+.|..+..+|-.++++|+.+ .++-++.+.+....+|+|.++++|+.+
T Consensus 544 DKiIVFsDnvfALk~YAikl~K--------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 544 DKIIVFSDNVFALKEYAIKLGK--------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred CeEEEEeccHHHHHHHHHHcCC--------ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEc
Confidence 8999999999888888777754 2367999999999999999954 578888899999999999999999876
Q ss_pred C-CCCcchhhhhhhhhhcCCC------CccEEEEeeCcccccchhhccccccccccccCC
Q 012427 412 K-PAYIKTYIHRAGRTARAGQ------LGRCFTLLHKDEKKGAIGRSLFHQSRVLGVGWS 464 (464)
Q Consensus 412 ~-~~s~~~~~Q~~GR~~R~g~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (464)
. ..|.++-.||.||..|..+ +...+.+++.++.+++| +-..++.++.+||+
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y--StKRQ~FLidQGYs 673 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY--STKRQQFLIDQGYS 673 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh--hhhhhhhhhhcCce
Confidence 5 4678899999999999632 23456677777777777 66778888888885
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=9.6e-25 Score=216.13 Aligned_cols=354 Identities=17% Similarity=0.208 Sum_probs=229.0
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.+++.|.- ..+.-.+.-++.++||.|||+++.+|++...+.+ ..|.||||+..||.|.++++..+...+|
T Consensus 82 ~~ydVQli------Ggl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g----~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLL------GGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTG----KGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHh------cchHhcCCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 67777742 2222345569999999999999999988777654 2599999999999999999999999999
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HHhhhcCCCcC-----CCCccEEEE
Q 012427 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFT-----LEHLCYLVV 203 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~~l~~~~~~~-----~~~~~~iIv 203 (464)
++|++..++.+..... ..-.++|+++|+..| .++|...-... ...+.++||
T Consensus 152 lsv~~i~~~~~~~~r~-----------------------~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIv 208 (908)
T PRK13107 152 LTVGINVAGLGQQEKK-----------------------AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALI 208 (908)
T ss_pred CeEEEecCCCCHHHHH-----------------------hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeee
Confidence 9999999887653331 112579999999999 77776542222 367889999
Q ss_pred ehhhHhhhH----------------hhhhhHHHHHHhccccc---------cccc-----------ccc-----cccc--
Q 012427 204 DETDRLLRE----------------AYQAWLPTVLQLTRSDN---------ENRF-----------SDA-----STFL-- 240 (464)
Q Consensus 204 DE~H~~~~~----------------~~~~~~~~~~~~~~~~~---------~~~~-----------~~~-----~~~~-- 240 (464)
||+|.++-+ .....+..+...+.... ...+ .+. ...+
T Consensus 209 DEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~ 288 (908)
T PRK13107 209 DEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIE 288 (908)
T ss_pred cchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHh
Confidence 999986422 11122222222111000 0000 000 0000
Q ss_pred -------cccc---------------ccchhhhcc-------c---cccccCC---------------------CCCC--
Q 012427 241 -------PSAF---------------GSLKTIRRC-------G---VERGFKD---------------------KPYP-- 265 (464)
Q Consensus 241 -------~~~~---------------~~~~~~~~~-------~---~~~~~~~---------------------~~~~-- 265 (464)
...+ .+...+.+. + +...+.. ....
T Consensus 289 ~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e 368 (908)
T PRK13107 289 RGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNE 368 (908)
T ss_pred CCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCC
Confidence 0000 000000000 0 0000000 0000
Q ss_pred ---------------ceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh-
Q 012427 266 ---------------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS- 329 (464)
Q Consensus 266 ---------------~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 329 (464)
..+..+||+|......++...+-.+.+.++.... ........ .+......|..++.+.+..
T Consensus 369 ~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp--~~R~d~~d-~iy~t~~~K~~Aii~ei~~~ 445 (908)
T PRK13107 369 NQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRP--MVRKDMAD-LVYLTADEKYQAIIKDIKDC 445 (908)
T ss_pred ceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCC--ccceeCCC-cEEeCHHHHHHHHHHHHHHH
Confidence 1123567777654444444433333333332221 11111111 1233445666666665553
Q ss_pred -hCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCC-C----
Q 012427 330 -LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE-G---- 403 (464)
Q Consensus 330 -~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip-~---- 403 (464)
..+.++||||.|++.++.++++|.+.+ +....+|+++...++..+.+.|+.|. |+|||+++++|.||. +
T Consensus 446 ~~~GrpVLV~t~sv~~se~ls~~L~~~g---i~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~ 520 (908)
T PRK13107 446 RERGQPVLVGTVSIEQSELLARLMVKEK---IPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWN 520 (908)
T ss_pred HHcCCCEEEEeCcHHHHHHHHHHHHHCC---CCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchH
Confidence 368899999999999999999999877 88899999999999999999999987 999999999999996 1
Q ss_pred ---------------------------C-----CeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012427 404 ---------------------------V-----NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 404 ---------------------------~-----~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
+ =+||....+.|.+.=-|..||+||.|.+|.+-.|++=+|.
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 521 MEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 0 1688888899999999999999999999999999876665
No 104
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=7.3e-25 Score=213.60 Aligned_cols=348 Identities=22% Similarity=0.251 Sum_probs=239.7
Q ss_pred CCHHHHHHH-HHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 35 LDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 35 l~~~i~~~~-~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
+++...... +..|...++.||.+.+. .+++..++|.+..+||+.|||+++-+.++..+.-. ...++.+.|-...
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsi 281 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSI 281 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeeh
Confidence 555555554 55788999999999865 55666789999999999999999888777766643 3369999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCC-
Q 012427 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG- 192 (464)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~- 192 (464)
+..-...+..+....|+++..+.|..+.... .+.-.+.|+|.++-..+.++.-.
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~-------------------------~k~~sv~i~tiEkanslin~lie~ 336 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEKR-------------------------RKRESVAIATIEKANSLINSLIEQ 336 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCCc-------------------------ccceeeeeeehHhhHhHHHHHHhc
Confidence 9998999999988889999999877654433 23348999999987665544211
Q ss_pred cCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEe
Q 012427 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (464)
Q Consensus 193 ~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (464)
-.+..+++|||||.|.+.+.+.+..++.++..+.-.+.. ..++.|++
T Consensus 337 g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~---------------------------------~~~~iIGM 383 (1008)
T KOG0950|consen 337 GRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE---------------------------------TSVQIIGM 383 (1008)
T ss_pred CCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc---------------------------------cceeEeee
Confidence 235678999999999999999999999888866533221 11489999
Q ss_pred eeeeecCccchhcccccCCeeeecCCccccCcccccccee------------------eccCCchHHHHHHHHHh-h-CC
Q 012427 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL------------------ICESKLKPLYLVALLQS-L-GE 332 (464)
Q Consensus 273 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~l~~~l~~-~-~~ 332 (464)
|||+++...-..+.. ...+....+...+.+.+.--.. ......+.+.+..+..+ . .+
T Consensus 384 SATi~N~~lL~~~L~---A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~ 460 (1008)
T KOG0950|consen 384 SATIPNNSLLQDWLD---AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEG 460 (1008)
T ss_pred ecccCChHHHHHHhh---hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcC
Confidence 999965532222211 1111111111111111100000 00000111111111111 1 23
Q ss_pred CeEEEEecChhhHHHHHHHHhhc-----------C------------------------ccceeEeeccCcccHHHHHHH
Q 012427 333 EKCIVFTSSVESTHRLCTLLNHF-----------G------------------------ELRIKIKEYSGLQRQSVRSKT 377 (464)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~l~~~-----------~------------------------~~~~~~~~~~~~~~~~~r~~~ 377 (464)
.++||||+++..|+.++..+... + -.+..++++|+|++.++|+.+
T Consensus 461 ~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~i 540 (1008)
T KOG0950|consen 461 SSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREII 540 (1008)
T ss_pred CeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHH
Confidence 46999999999999888665430 0 023568889999999999999
Q ss_pred HHHHhcCCeeEEEEcccccccCCCCCCCeEEEec----CCCCcchhhhhhhhhhcCC--CCccEEEEeeCcccccch
Q 012427 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD----KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 378 ~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~----~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~ 448 (464)
...|+.|...+++||+.+..|+++|.-..++-.- ...+.-.|.||+|||||.| -.|.++.++...+...+.
T Consensus 541 E~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~ 617 (1008)
T KOG0950|consen 541 EAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVR 617 (1008)
T ss_pred HHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHH
Confidence 9999999999999999999999999765555332 2234558999999999997 467788888777766655
No 105
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.93 E-value=3.9e-24 Score=203.21 Aligned_cols=365 Identities=18% Similarity=0.216 Sum_probs=234.5
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHh-hccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (464)
..+++||.+-+..++....+|-++|+...+|-|||+..+. .+..+.. .+..+ .-||++|...|. .|..++++|++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs-~l~yl~~~~~~~G-PfLVi~P~StL~-NW~~Ef~rf~P- 241 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTIS-LLGYLKGRKGIPG-PFLVIAPKSTLD-NWMNEFKRFTP- 241 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHH-HHHHHHHhcCCCC-CeEEEeeHhhHH-HHHHHHHHhCC-
Confidence 3799999999998888888899999999999999998554 4444443 33344 589999998876 48999999998
Q ss_pred cCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhh
Q 012427 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
++++.+++|+..-......-. ......+|+|+||+..++--.- +.--+++++||||||
T Consensus 242 -~l~~~~~~Gdk~eR~~~~r~~------------------~~~~~fdV~iTsYEi~i~dk~~---lk~~~W~ylvIDEaH 299 (971)
T KOG0385|consen 242 -SLNVVVYHGDKEERAALRRDI------------------MLPGRFDVCITSYEIAIKDKSF---LKKFNWRYLVIDEAH 299 (971)
T ss_pred -CcceEEEeCCHHHHHHHHHHh------------------hccCCCceEeehHHHHHhhHHH---HhcCCceEEEechhh
Confidence 589999999874332221111 1123579999999998764222 122358999999999
Q ss_pred HhhhHhhhhhHHHHHHhcc---------cccccccccc----ccccccccccchhhh----ccc----------------
Q 012427 208 RLLREAYQAWLPTVLQLTR---------SDNENRFSDA----STFLPSAFGSLKTIR----RCG---------------- 254 (464)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~---------------- 254 (464)
++-+.... +..++..+. ++-++.+... ...+|..+.....+. .+.
T Consensus 300 RiKN~~s~--L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~ 377 (971)
T KOG0385|consen 300 RIKNEKSK--LSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLR 377 (971)
T ss_pred hhcchhhH--HHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhh
Confidence 98654321 222222222 2222211111 112222222211100 000
Q ss_pred --cc----cccCCCCCCceee--EEeeeeeecC----------c-----------------cchhcccccCCeeeecCCc
Q 012427 255 --VE----RGFKDKPYPRLVK--MVLSATLTQD----------P-----------------NKLAQLDLHHPLFLTTGET 299 (464)
Q Consensus 255 --~~----~~~~~~~~~~~~~--i~~sat~~~~----------~-----------------~~~~~~~~~~~~~~~~~~~ 299 (464)
.. ...... .++... +..+-+..+. . .-.......+|..+...+.
T Consensus 378 pFlLRR~K~dVe~s-LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~eP 456 (971)
T KOG0385|consen 378 PFLLRRIKSDVEKS-LPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEP 456 (971)
T ss_pred HHHHHHHHHhHhhc-CCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCC
Confidence 00 011111 111111 1111111000 0 0001122233443333111
Q ss_pred cccCccccccceeeccCCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHH
Q 012427 300 RYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377 (464)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~ 377 (464)
. .........+....|...|..++... .+.++|+|.+-.....-+..+....+ +....+.|.++.++|.+.
T Consensus 457 g----~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~---y~ycRiDGSt~~eeR~~a 529 (971)
T KOG0385|consen 457 G----PPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRG---YEYCRLDGSTSHEEREDA 529 (971)
T ss_pred C----CCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcC---ceeEeecCCCCcHHHHHH
Confidence 0 12222233445677888888888765 57799999998888888888876655 899999999999999999
Q ss_pred HHHHhcCC---eeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccE--EEEeeCcccccchh
Q 012427 378 LKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKDEKKGAIG 449 (464)
Q Consensus 378 ~~~f~~~~---~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~~~~~~ 449 (464)
++.|.... .-+|++|.+.+-|||+..++.||+|+..|++..=.|.+-||+|.|+...+ +.+++.+..++-+.
T Consensus 530 I~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~Iv 606 (971)
T KOG0385|consen 530 IEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIV 606 (971)
T ss_pred HHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHH
Confidence 99998644 45789999999999999999999999999999999999999999988866 45577777777664
No 106
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=8.7e-24 Score=212.47 Aligned_cols=317 Identities=20% Similarity=0.190 Sum_probs=221.7
Q ss_pred HHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 012427 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (464)
Q Consensus 43 ~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (464)
...+|| .|-++|++++..+- ++.++++++|||+|||+++-.++...+..++ ++++.+|.++|..|.+..+.
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~q----rviYTsPIKALsNQKyrdl~ 183 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDGQ----RVIYTSPIKALSNQKYRDLL 183 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcCC----ceEeccchhhhhhhHHHHHH
Confidence 455788 79999999966554 5999999999999999998887777766543 79999999999999988887
Q ss_pred HhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEE
Q 012427 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (464)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iI 202 (464)
.......--++.+.|+..+ ...+.++|+|.+.|.+.+.++. ..+.++..||
T Consensus 184 ~~fgdv~~~vGL~TGDv~I----------------------------N~~A~clvMTTEILRnMlyrg~-~~~~~i~~Vi 234 (1041)
T COG4581 184 AKFGDVADMVGLMTGDVSI----------------------------NPDAPCLVMTTEILRNMLYRGS-ESLRDIEWVV 234 (1041)
T ss_pred HHhhhhhhhccceecceee----------------------------CCCCceEEeeHHHHHHHhccCc-ccccccceEE
Confidence 6544322235667777553 3456899999999999888764 6688999999
Q ss_pred EehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccc
Q 012427 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (464)
Q Consensus 203 vDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 282 (464)
+||+|.+.+...+-..++.+-+++. .++.+++|||+++..+.
T Consensus 235 FDEvHyi~D~eRG~VWEE~Ii~lP~--------------------------------------~v~~v~LSATv~N~~EF 276 (1041)
T COG4581 235 FDEVHYIGDRERGVVWEEVIILLPD--------------------------------------HVRFVFLSATVPNAEEF 276 (1041)
T ss_pred EEeeeeccccccchhHHHHHHhcCC--------------------------------------CCcEEEEeCCCCCHHHH
Confidence 9999988777666666666666653 34789999999766555
Q ss_pred hhcccc--cCCeeeecCCccccCccccccc-------eeec---------------------------------------
Q 012427 283 LAQLDL--HHPLFLTTGETRYKLPERLESY-------KLIC--------------------------------------- 314 (464)
Q Consensus 283 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~--------------------------------------- 314 (464)
..+... ..+..+......+ ....++ +...
T Consensus 277 ~~Wi~~~~~~~~~vv~t~~Rp---vPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~ 353 (1041)
T COG4581 277 AEWIQRVHSQPIHVVSTEHRP---VPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARR 353 (1041)
T ss_pred HHHHHhccCCCeEEEeecCCC---CCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcccccccccc
Confidence 444321 1122111111000 000000 0000
Q ss_pred --------cCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcC-------------------------cc---
Q 012427 315 --------ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-------------------------EL--- 358 (464)
Q Consensus 315 --------~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~-------------------------~~--- 358 (464)
....+...+...+.....-++++|+=|+..|+..+..+.... ..
T Consensus 354 ~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp 433 (1041)
T COG4581 354 TKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELP 433 (1041)
T ss_pred ccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCc
Confidence 000111224444444556689999999999988887776310 00
Q ss_pred ----------ceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecC---------CCCcchh
Q 012427 359 ----------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---------PAYIKTY 419 (464)
Q Consensus 359 ----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~---------~~s~~~~ 419 (464)
.-.+.+.|++|-+..|..+.+.|..|-.+++++|.+++.|+|.|. ..|++.+. .-+...|
T Consensus 434 ~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtvv~~~l~K~dG~~~r~L~~gEy 512 (1041)
T COG4581 434 LQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTVVFTSLSKFDGNGHRWLSPGEY 512 (1041)
T ss_pred ccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cceeeeeeEEecCCceeecChhHH
Confidence 012557899999999999999999999999999999999999995 55555442 2457899
Q ss_pred hhhhhhhhcCCCCccEEEEe
Q 012427 420 IHRAGRTARAGQLGRCFTLL 439 (464)
Q Consensus 420 ~Q~~GR~~R~g~~g~~~~~~ 439 (464)
.|+.|||||.|-+-.+.+++
T Consensus 513 ~QmsGRAGRRGlD~~G~vI~ 532 (1041)
T COG4581 513 TQMSGRAGRRGLDVLGTVIV 532 (1041)
T ss_pred HHhhhhhccccccccceEEE
Confidence 99999999999665554444
No 107
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=9e-25 Score=206.76 Aligned_cols=316 Identities=19% Similarity=0.230 Sum_probs=217.2
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
+.| +|-++|..++.. +-+++++++.|.|.+|||.++-.++...+...+ |+++-+|-++|..|-++++..-+
T Consensus 126 YPF-~LDpFQ~~aI~C----idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ----RVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 126 YPF-TLDPFQSTAIKC----IDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ----RVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred CCc-ccCchHhhhhhh----hcCCceEEEEeecCCCcchHHHHHHHHHHHhcC----eEEeeChhhhhcchhHHHHHHHh
Confidence 455 688999998554 346899999999999999998888888877654 89999999999999988887654
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEeh
Q 012427 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE 205 (464)
. .|++..|+-.+ ...+.-+|+|.+.|-+.+.++. --+..+..||+||
T Consensus 197 ~----DVGLMTGDVTI----------------------------nP~ASCLVMTTEILRsMLYRGS-EvmrEVaWVIFDE 243 (1041)
T KOG0948|consen 197 K----DVGLMTGDVTI----------------------------NPDASCLVMTTEILRSMLYRGS-EVMREVAWVIFDE 243 (1041)
T ss_pred c----ccceeecceee----------------------------CCCCceeeeHHHHHHHHHhccc-hHhheeeeEEeee
Confidence 4 35667777653 3345789999999999888766 3467899999999
Q ss_pred hhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhc
Q 012427 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (464)
Q Consensus 206 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 285 (464)
+|.|-+...+=..++-+-+++ .+.+.+++|||+++......|
T Consensus 244 IHYMRDkERGVVWEETIIllP--------------------------------------~~vr~VFLSATiPNA~qFAeW 285 (1041)
T KOG0948|consen 244 IHYMRDKERGVVWEETIILLP--------------------------------------DNVRFVFLSATIPNARQFAEW 285 (1041)
T ss_pred ehhccccccceeeeeeEEecc--------------------------------------ccceEEEEeccCCCHHHHHHH
Confidence 998855443322222222221 455889999999877665554
Q ss_pred cc-cc-CCeeeecCCccccCccccccc---------eeeccCC-------------------------------------
Q 012427 286 LD-LH-HPLFLTTGETRYKLPERLESY---------KLICESK------------------------------------- 317 (464)
Q Consensus 286 ~~-~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~------------------------------------- 317 (464)
.. ++ .|-++--.+ ..|..+++| +..+..+
T Consensus 286 I~~ihkQPcHVVYTd---yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~ 362 (1041)
T KOG0948|consen 286 ICHIHKQPCHVVYTD---YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTG 362 (1041)
T ss_pred HHHHhcCCceEEeec---CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcC
Confidence 32 22 121111110 000111111 1111111
Q ss_pred ------chHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCc----------------------------------
Q 012427 318 ------LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE---------------------------------- 357 (464)
Q Consensus 318 ------~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~---------------------------------- 357 (464)
.....++..+-.....++|||+=|+++|+.++-.+.+...
T Consensus 363 ~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iL 442 (1041)
T KOG0948|consen 363 GKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENIL 442 (1041)
T ss_pred CCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHH
Confidence 1222333444444567899999999999999988875210
Q ss_pred --cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC---------CCcchhhhhhhhh
Q 012427 358 --LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGRT 426 (464)
Q Consensus 358 --~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~---------~s~~~~~Q~~GR~ 426 (464)
+.-.+.+.|+|+-+--++-+.=.|.+|=+++|+||..++.|+|.|. ..|++.... -|-..|+|+.|||
T Consensus 443 PLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA-kTVvFT~~rKfDG~~fRwissGEYIQMSGRA 521 (1041)
T KOG0948|consen 443 PLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA-KTVVFTAVRKFDGKKFRWISSGEYIQMSGRA 521 (1041)
T ss_pred HHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc-eeEEEeeccccCCcceeeecccceEEecccc
Confidence 1124778999999888877777899999999999999999999995 455554422 2456899999999
Q ss_pred hcCCC--CccEEEEeeCcccc
Q 012427 427 ARAGQ--LGRCFTLLHKDEKK 445 (464)
Q Consensus 427 ~R~g~--~g~~~~~~~~~~~~ 445 (464)
||.|. .|.|+++++.....
T Consensus 522 GRRG~DdrGivIlmiDekm~~ 542 (1041)
T KOG0948|consen 522 GRRGIDDRGIVILMIDEKMEP 542 (1041)
T ss_pred cccCCCCCceEEEEecCcCCH
Confidence 99994 66777777665443
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=9.9e-23 Score=199.93 Aligned_cols=325 Identities=22% Similarity=0.268 Sum_probs=198.7
Q ss_pred HHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHH
Q 012427 41 VALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (464)
Q Consensus 41 ~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~ 119 (464)
+.+++ .|| .|+..|+-= .+++.+|+++.+.||||+|||.-.++..+..... +.++++++||..|+.|..+
T Consensus 73 ~fF~k~~G~-~~ws~QR~W----akR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k----gkr~yii~PT~~Lv~Q~~~ 143 (1187)
T COG1110 73 EFFKKATGF-RPWSAQRVW----AKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK----GKRVYIIVPTTTLVRQVYE 143 (1187)
T ss_pred HHHHHhhCC-CchHHHHHH----HHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc----CCeEEEEecCHHHHHHHHH
Confidence 33444 465 899999654 4455569999999999999998666544444332 4589999999999999999
Q ss_pred HHHHhccccC-ceEEE-eecCCchhHHHHHhhccccccccccCCchhHHHhhhcC-CcEEEeCchHHHHhhhcCCCcCCC
Q 012427 120 VFAAIAPAVG-LSVGL-AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLE 196 (464)
Q Consensus 120 ~~~~~~~~~~-~~v~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IiI~T~~~l~~~l~~~~~~~~~ 196 (464)
.+.++....+ ..+.. +|+.-+.... ....+.+.++ .+|+|+|.+-|......... -
T Consensus 144 kl~~~~e~~~~~~~~~~yh~~l~~~ek------------------ee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~ 202 (1187)
T COG1110 144 RLKKFAEDAGSLDVLVVYHSALPTKEK------------------EEALERIESGDFDILITTSQFLSKRFEELSK---L 202 (1187)
T ss_pred HHHHHHhhcCCcceeeeeccccchHHH------------------HHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---c
Confidence 9999987655 33333 5565444332 3444555554 89999999888776655332 3
Q ss_pred CccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccc-cccccc------cccchhhhccccccccCCCCCCceee
Q 012427 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS-TFLPSA------FGSLKTIRRCGVERGFKDKPYPRLVK 269 (464)
Q Consensus 197 ~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
+|++|++|++|.++..+ ..+..++.++.-....--..+. ..+... .+......+- ........-...-+.
T Consensus 203 kFdfifVDDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~-~e~~~~~~r~k~g~L 279 (1187)
T COG1110 203 KFDFIFVDDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELRE-VEREREKKRRKLGIL 279 (1187)
T ss_pred CCCEEEEccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHHHhccCCceE
Confidence 58999999999887654 4444444444322100000000 000000 0000000000 000000111123367
Q ss_pred EEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecC---hhhHH
Q 012427 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS---VESTH 346 (464)
Q Consensus 270 i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s---~~~~~ 346 (464)
++.|||..+.-....-. ..-.-+..+.....+ .++...+.. . .-...+.++++.. +..+|||++. ++.++
T Consensus 280 vvsSATg~~rg~R~~Lf--ReLlgFevG~~~~~L-RNIvD~y~~--~-~~~e~~~elvk~l-G~GgLIfV~~d~G~e~ae 352 (1187)
T COG1110 280 VVSSATGKPRGSRLKLF--RELLGFEVGSGGEGL-RNIVDIYVE--S-ESLEKVVELVKKL-GDGGLIFVPIDYGREKAE 352 (1187)
T ss_pred EEeeccCCCCCchHHHH--HHHhCCccCccchhh-hheeeeecc--C-ccHHHHHHHHHHh-CCCeEEEEEcHHhHHHHH
Confidence 88899975543221110 011111122211111 111111111 1 4455566666665 4478999999 99999
Q ss_pred HHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEc----ccccccCCCCC-CCeEEEecCC
Q 012427 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDKP 413 (464)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t----~~~~~Gidip~-~~~vi~~~~~ 413 (464)
+++++|+.+| +++..+|++ +.+.++.|..|+.++||++ ..+.+|+|+|. +..+|+++.|
T Consensus 353 el~e~Lr~~G---i~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 353 ELAEYLRSHG---INAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHHHHHhcC---ceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9999999888 999999885 3678999999999999987 46889999996 7889998876
No 109
>COG4889 Predicted helicase [General function prediction only]
Probab=99.91 E-value=2.3e-24 Score=207.04 Aligned_cols=351 Identities=17% Similarity=0.192 Sum_probs=206.2
Q ss_pred HHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 012427 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 38 ~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~ 117 (464)
+++..+.-..-..||++|+.|+.+..+.+..+...-+.+.+|+|||++.+- +.+.+.. .++|+|+|++.|..|.
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~-----~~iL~LvPSIsLLsQT 222 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA-----ARILFLVPSISLLSQT 222 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh-----hheEeecchHHHHHHH
Confidence 333444333446899999999999999888888888999999999999664 4555443 3899999999999887
Q ss_pred HHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-----hcCCcEEEeCchHHHHhhhcCCC
Q 012427 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-----QSAVDILVATPGRLMDHINATRG 192 (464)
Q Consensus 118 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~IiI~T~~~l~~~l~~~~~ 192 (464)
.+++..-.. +++....++++.+.......+. -....-..++....+.... ..+.-|+++||+++...-... .
T Consensus 223 lrew~~~~~-l~~~a~aVcSD~kvsrs~eDik-~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ-e 299 (1518)
T COG4889 223 LREWTAQKE-LDFRASAVCSDDKVSRSAEDIK-ASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ-E 299 (1518)
T ss_pred HHHHhhccC-ccceeEEEecCccccccccccc-cccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH-H
Confidence 766654422 3677778888776554322111 1111112222333333222 344679999999997755432 2
Q ss_pred cCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEe
Q 012427 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (464)
Q Consensus 193 ~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (464)
.-+..+++||+||||+.........=...+. +-......+..+.+.+
T Consensus 300 ~G~~~fDliicDEAHRTtGa~~a~dd~saFt---------------------------------~vHs~~niKa~kRlYm 346 (1518)
T COG4889 300 AGLDEFDLIICDEAHRTTGATLAGDDKSAFT---------------------------------RVHSDQNIKAAKRLYM 346 (1518)
T ss_pred cCCCCccEEEecchhccccceecccCcccce---------------------------------eecCcchhHHHHhhhc
Confidence 4577899999999998632211100000000 0000111122233344
Q ss_pred eeeeecCcc--------------------------------chhccccc-CCeeeecCCccccCccccccceeeccCCc-
Q 012427 273 SATLTQDPN--------------------------------KLAQLDLH-HPLFLTTGETRYKLPERLESYKLICESKL- 318 (464)
Q Consensus 273 sat~~~~~~--------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 318 (464)
|||+.-..+ +..+..+. +..+....-.+..+...............
T Consensus 347 TATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~ 426 (1518)
T COG4889 347 TATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLA 426 (1518)
T ss_pred ccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccc
Confidence 444421100 00011110 11111000011111111111111111111
Q ss_pred -----hHHHHHHHHHhh---------------CCCeEEEEecChhhHHHHHHHHhh-----------c-CccceeEeecc
Q 012427 319 -----KPLYLVALLQSL---------------GEEKCIVFTSSVESTHRLCTLLNH-----------F-GELRIKIKEYS 366 (464)
Q Consensus 319 -----~~~~l~~~l~~~---------------~~~~~lVf~~s~~~~~~l~~~l~~-----------~-~~~~~~~~~~~ 366 (464)
+..-...-+.+. +.++.+-||.+++....+++.+.. . ..+.+.+.++.
T Consensus 427 ~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvD 506 (1518)
T COG4889 427 LDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVD 506 (1518)
T ss_pred hhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeeccc
Confidence 111111111111 123678999998888777766543 1 23456777899
Q ss_pred CcccHHHHHHHHHH---HhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCC
Q 012427 367 GLQRQSVRSKTLKA---FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (464)
Q Consensus 367 ~~~~~~~r~~~~~~---f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 430 (464)
|.|+..+|...+.. |...+++||-...++++|+|+|.++.||++++..|..+.+|.+||++|..
T Consensus 507 GtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 507 GTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred ccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 99999999665553 35678999999999999999999999999999999999999999999974
No 110
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.90 E-value=1e-21 Score=201.08 Aligned_cols=394 Identities=16% Similarity=0.143 Sum_probs=223.5
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH-HHHHHHhc
Q 012427 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV-KDVFAAIA 125 (464)
Q Consensus 47 ~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~-~~~~~~~~ 125 (464)
|| +.|+.|.+++..+.+++..+..++++++||+|||++|++|++... .+.+++|+|||++|++|+ .+.+..+.
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 56 799999999999999898899999999999999999999988643 234799999999999999 57777777
Q ss_pred cccCceEEEeecCCchhHH--HHHhhcccc--------------------------c-------------cccc---cCC
Q 012427 126 PAVGLSVGLAVGQSSIADE--ISELIKRPK--------------------------L-------------EAGI---CYD 161 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~--~~~~~~~~~--------------------------~-------------~~~~---~~~ 161 (464)
...++++..+.|+.++-.. ......... . .+.. ..+
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 7778888888887765311 111110000 0 0000 001
Q ss_pred ---chhHH---HhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHh--hhh-------hHHHHHH---
Q 012427 162 ---PEDVL---QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQA-------WLPTVLQ--- 223 (464)
Q Consensus 162 ---~~~~~---~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~--~~~-------~~~~~~~--- 223 (464)
..+.+ +.-...++|+|++...|...+.... .+...+.+||||||++.+.. +.. ....+..
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 01222 2224668999999998887664433 24578999999999985321 000 0000000
Q ss_pred -----------------------hccccc-c-------cc------------ccccccccc-----cccccch----h--
Q 012427 224 -----------------------LTRSDN-E-------NR------------FSDASTFLP-----SAFGSLK----T-- 249 (464)
Q Consensus 224 -----------------------~~~~~~-~-------~~------------~~~~~~~~~-----~~~~~~~----~-- 249 (464)
.+.... . .. .......+. .++.... .
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 000000 0 00 000000000 0000000 0
Q ss_pred -hhcccccc-ccCCCCCCceeeEEeeeeee--cCccchhcccccCCeeeecCCccccCcccccccee-eccC-----Cch
Q 012427 250 -IRRCGVER-GFKDKPYPRLVKMVLSATLT--QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL-ICES-----KLK 319 (464)
Q Consensus 250 -~~~~~~~~-~~~~~~~~~~~~i~~sat~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~ 319 (464)
+......- .+..........|++|||+. +........++......... +...+....+.. ..+. ...
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~---~~~~~~~~~~i~~~~p~~~~~~~~~ 631 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIE---KDKKQDQLVVVDQDMPLVTETSDEV 631 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCC---CChHHccEEEeCCCCCCCCCCChHH
Confidence 00000000 00000112246789999996 33332222333221111110 000010000100 0010 111
Q ss_pred H-HHHHHHHHh--hCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccccc
Q 012427 320 P-LYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (464)
Q Consensus 320 ~-~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~ 396 (464)
. ..+...+.. ..+++++|+++|.+..+.+++.|.... ..+ ...|... .+..++++|++++..||++|..++
T Consensus 632 ~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~---~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFw 705 (820)
T PRK07246 632 YAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQ---VSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFW 705 (820)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcC---CcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhh
Confidence 1 112222211 357899999999999999999997542 333 3444322 245689999998889999999999
Q ss_pred ccCCCCC--CCeEEEecCCCC------------------------------cchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012427 397 RGMDVEG--VNNVVNYDKPAY------------------------------IKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 397 ~Gidip~--~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
||||+|+ ...+|+...|.. ...+.|.+||..|...+.-+++++|++-.
T Consensus 706 EGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~ 785 (820)
T PRK07246 706 EGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRIL 785 (820)
T ss_pred CCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCccc
Confidence 9999974 556788886621 23457999999999766667778888777
Q ss_pred ccchhhccccccc
Q 012427 445 KGAIGRSLFHQSR 457 (464)
Q Consensus 445 ~~~~~~~~~~~~~ 457 (464)
..-|++.+.+..|
T Consensus 786 ~k~Yg~~~l~sLP 798 (820)
T PRK07246 786 TKSYGKQILASLA 798 (820)
T ss_pred ccHHHHHHHHhCC
Confidence 6667666655554
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=1.7e-22 Score=205.71 Aligned_cols=342 Identities=16% Similarity=0.142 Sum_probs=205.3
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
..++.|..++..+......+..+++.+|||+|||.+.+.++...+........+++++.|++.+.+++++.+++.....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 45899999988877655444489999999999999999888877776322566899999999999999999998766543
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHH-hhhcCCcEEEeCchHHHHhhhcCCCcC-CC--CccEEEEeh
Q 012427 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ-ELQSAVDILVATPGRLMDHINATRGFT-LE--HLCYLVVDE 205 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~IiI~T~~~l~~~l~~~~~~~-~~--~~~~iIvDE 205 (464)
+.....++.....-.... .. .... .....+ ....-..+.++|+............+. +. ..+++|+||
T Consensus 275 ~~~~~~h~~~~~~~~~~~-----~~--~~~~-~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEP-----DQ--DILL-TLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred cccccccccccchhhhcc-----cc--ccce-eEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 322223443322111000 00 0000 000000 011113455555555544322222222 11 247999999
Q ss_pred hhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhc
Q 012427 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (464)
Q Consensus 206 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 285 (464)
+|.+.....-..+...+..+.. ....++++|||++........
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~~-------------------------------------~g~~ill~SATlP~~~~~~l~ 389 (733)
T COG1203 347 VHLYADETMLAALLALLEALAE-------------------------------------AGVPVLLMSATLPPFLKEKLK 389 (733)
T ss_pred HHhhcccchHHHHHHHHHHHHh-------------------------------------CCCCEEEEecCCCHHHHHHHH
Confidence 9977555222222222222221 222789999999887666554
Q ss_pred ccccCCeeeecCCc-cccCccccccce--eeccCCchHHHHHHHH-HhhCCCeEEEEecChhhHHHHHHHHhhcCcccee
Q 012427 286 LDLHHPLFLTTGET-RYKLPERLESYK--LICESKLKPLYLVALL-QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361 (464)
Q Consensus 286 ~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~l~~~l-~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~ 361 (464)
.............. .....+...... ................ ....+.+++|.|+++..|.++++.|+..+ ..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~---~~ 466 (733)
T COG1203 390 KALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKG---PK 466 (733)
T ss_pred HHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcC---CC
Confidence 43333222211110 000011100000 0000110001111111 12246799999999999999999999876 37
Q ss_pred EeeccCcccHHHHHHHHHHHh----cCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCC--CCccE
Q 012427 362 IKEYSGLQRQSVRSKTLKAFR----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QLGRC 435 (464)
Q Consensus 362 ~~~~~~~~~~~~r~~~~~~f~----~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g--~~g~~ 435 (464)
+..+|+.+...+|.+.++.+. .++..|+|+|++.+.|+|+- .+.+|---. .+.+++||+||++|.| ..|.+
T Consensus 467 v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~ 543 (733)
T COG1203 467 VLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELA--PIDSLIQRAGRVNRHGKKENGKI 543 (733)
T ss_pred EEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCC--CHHHHHHHHHHHhhcccccCCce
Confidence 999999999999998887654 46789999999999999994 566654433 3789999999999999 45666
Q ss_pred EEEeeCc
Q 012427 436 FTLLHKD 442 (464)
Q Consensus 436 ~~~~~~~ 442 (464)
+++...+
T Consensus 544 ~v~~~~~ 550 (733)
T COG1203 544 YVYNDEE 550 (733)
T ss_pred eEeeccc
Confidence 6555443
No 112
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.90 E-value=1.8e-22 Score=170.64 Aligned_cols=147 Identities=33% Similarity=0.532 Sum_probs=121.2
Q ss_pred chhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCce
Q 012427 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131 (464)
Q Consensus 52 ~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 131 (464)
+++|.+++..+.. ++++++.+|||+|||+++.++++..+.+. +..++++++|+++|+.|..+.+..++...+.+
T Consensus 1 t~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeecccccccccccccccccccccc
Confidence 5799999998885 89999999999999999999999888775 33489999999999999999999998877789
Q ss_pred EEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhh
Q 012427 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (464)
Q Consensus 132 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~ 211 (464)
+..++++........ ..+..+++|+|+||+++.+.+.... ..+.++++||+||+|++..
T Consensus 75 ~~~~~~~~~~~~~~~--------------------~~~~~~~~ilv~T~~~l~~~~~~~~-~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 75 VVLLHGGQSISEDQR--------------------EVLSNQADILVTTPEQLLDLISNGK-INISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp EEEESTTSCHHHHHH--------------------HHHHTTSSEEEEEHHHHHHHHHTTS-STGTTESEEEEETHHHHHH
T ss_pred ccccccccccccccc--------------------ccccccccccccCcchhhccccccc-cccccceeeccCccccccc
Confidence 999999876442211 1234568999999999999988744 3667799999999999988
Q ss_pred HhhhhhHHHHHHhc
Q 012427 212 EAYQAWLPTVLQLT 225 (464)
Q Consensus 212 ~~~~~~~~~~~~~~ 225 (464)
..+...+..+...+
T Consensus 134 ~~~~~~~~~i~~~~ 147 (169)
T PF00270_consen 134 ETFRAMLKSILRRL 147 (169)
T ss_dssp TTHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHh
Confidence 77777777777665
No 113
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.89 E-value=8.8e-23 Score=203.13 Aligned_cols=377 Identities=18% Similarity=0.198 Sum_probs=245.5
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
.+||.||.+-+..++..+-+++++|+...+|.|||+....-+-..+......+ ..||++|...+.. |.++|..+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~g-pflvvvplst~~~-W~~ef~~w~--- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHG-PFLVVVPLSTITA-WEREFETWT--- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccC-CeEEEeehhhhHH-HHHHHHHHh---
Confidence 68999999999988888888999999999999999885543333333332334 5899999877654 788888876
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012427 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
++++.+++|.......++.+........ -.-..+++++|++.++.--.... --.+.++++||||+
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~~~~------------~~lkf~~lltTye~~LkDk~~L~---~i~w~~~~vDeahr 508 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHSSNT------------KKLKFNALLTTYEIVLKDKAELS---KIPWRYLLVDEAHR 508 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheecCCc------------cccccceeehhhHHHhccHhhhc---cCCcceeeecHHhh
Confidence 6899999999888777766543221100 00125899999999865333222 22478999999999
Q ss_pred hhhHhh----------------------hhhHHHHHHhccccccccccccccccccc-------cccchh----hhcccc
Q 012427 209 LLREAY----------------------QAWLPTVLQLTRSDNENRFSDASTFLPSA-------FGSLKT----IRRCGV 255 (464)
Q Consensus 209 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~~~~~~ 255 (464)
+-+..- +..++++..++.-..+..|+.+..+.... +..+-. ...-.+
T Consensus 509 LkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~ 588 (1373)
T KOG0384|consen 509 LKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred cCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHH
Confidence 864321 22234444444444455555555444443 000000 000001
Q ss_pred ccccCCCCCCceeeEE---eeeee--------ecC-----------------ccchhcccccCCeeeecCCccccCccc-
Q 012427 256 ERGFKDKPYPRLVKMV---LSATL--------TQD-----------------PNKLAQLDLHHPLFLTTGETRYKLPER- 306 (464)
Q Consensus 256 ~~~~~~~~~~~~~~i~---~sat~--------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (464)
..+....+.++.-.|+ +|+-- ..+ +......+.++|..+...+........
T Consensus 589 kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~ 668 (1373)
T KOG0384|consen 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD 668 (1373)
T ss_pred HhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhh
Confidence 1122222222211111 11100 000 000111223344444433321111110
Q ss_pred ---cccceeeccCCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHH
Q 012427 307 ---LESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (464)
Q Consensus 307 ---~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 381 (464)
-..+........|+..|..+|... .+.++|||.+=+.+..-|++||...+ ++...+.|.+..+.|+..++.|
T Consensus 669 ~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~---ypfQRLDGsvrgelRq~AIDhF 745 (1373)
T KOG0384|consen 669 KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG---YPFQRLDGSVRGELRQQAIDHF 745 (1373)
T ss_pred cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC---CcceeccCCcchHHHHHHHHhc
Confidence 012223344566777788888765 45699999999999999999999877 8999999999999999999999
Q ss_pred hc---CCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccE--EEEeeCcccccch
Q 012427 382 RE---GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKDEKKGAI 448 (464)
Q Consensus 382 ~~---~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~~~~~ 448 (464)
.. ..+-+|++|.+.+-|||+..++.||||+..|+|..=+|+..||+|.|+...+ +-+++.+..++.+
T Consensus 746 nap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEi 817 (1373)
T KOG0384|consen 746 NAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEI 817 (1373)
T ss_pred cCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHH
Confidence 84 4577999999999999999999999999999999999999999999988755 6677777766644
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=6e-21 Score=190.02 Aligned_cols=125 Identities=22% Similarity=0.281 Sum_probs=110.1
Q ss_pred CCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc
Q 012427 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (464)
Q Consensus 316 ~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~ 393 (464)
...+...+...+... .+.++||||++...++.+++.|.+.+ +.+..+|++++..+|.++++.|+.|+.+|||||+
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g---i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG---IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc---cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 344555555555543 56789999999999999999999877 8899999999999999999999999999999999
Q ss_pred cccccCCCCCCCeEEEec-----CCCCcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012427 394 AMTRGMDVEGVNNVVNYD-----KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 394 ~~~~Gidip~~~~vi~~~-----~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
.+++|+|+|++++||+++ .|.+..+|+|++||+||. ..|.+++|++..+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITD 555 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCH
Confidence 999999999999999988 688999999999999998 68999999886553
No 115
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=3.6e-21 Score=184.06 Aligned_cols=376 Identities=19% Similarity=0.180 Sum_probs=234.8
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
..|.+||+..++.+++....+...|+-..+|-|||...+. .+..+..+..-..++|||||. .+..||.+++..|++
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiis-FLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p-- 279 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIIS-FLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWP-- 279 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHH-HHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCc--
Confidence 4688999999999888777788899999999999977432 333333331222479999998 578899999999988
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012427 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
..+|.++++.......-.. +..-.....+.........|+|+||+.+.-. ...+.--.++++|+||.|+
T Consensus 280 ~~rv~ilh~t~s~~r~~~~--------~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---~d~l~~~~W~y~ILDEGH~ 348 (923)
T KOG0387|consen 280 PFRVFILHGTGSGARYDAS--------HSSHKKDKLLIRKVATDGGILITTYDGFRIQ---GDDLLGILWDYVILDEGHR 348 (923)
T ss_pred ceEEEEEecCCcccccccc--------hhhhhhhhhheeeecccCcEEEEehhhhccc---CcccccccccEEEecCccc
Confidence 4788888887653110000 0000000111122334468999999886332 1123334589999999999
Q ss_pred hhhHhhhhhHHHHHHh---------ccccccccccccc----cccccccccchhhhcccc--------------------
Q 012427 209 LLREAYQAWLPTVLQL---------TRSDNENRFSDAS----TFLPSAFGSLKTIRRCGV-------------------- 255 (464)
Q Consensus 209 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------------------- 255 (464)
+-+.+.. +...+.. ..++.++.+.... -.+|+.++....+.....
T Consensus 349 IrNpns~--islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ay 426 (923)
T KOG0387|consen 349 IRNPNSK--ISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAY 426 (923)
T ss_pred ccCCccH--HHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHH
Confidence 8554432 2122221 2222233222221 222333322211111000
Q ss_pred ------------------cccc--CCCCCCceeeEEeeeeeecCccchhccccc--------------------------
Q 012427 256 ------------------ERGF--KDKPYPRLVKMVLSATLTQDPNKLAQLDLH-------------------------- 289 (464)
Q Consensus 256 ------------------~~~~--~~~~~~~~~~i~~sat~~~~~~~~~~~~~~-------------------------- 289 (464)
.... ...+.+...++++.-|..+.. .+..++.
T Consensus 427 kca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~--~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICn 504 (923)
T KOG0387|consen 427 KCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRR--LYQRFLNSSEVNKILNGKRNCLSGIDILRKICN 504 (923)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHH--HHHHHhhhHHHHHHHcCCccceechHHHHhhcC
Confidence 0000 123444455555555543221 1111111
Q ss_pred CCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhh-cCccceeEeecc
Q 012427 290 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYS 366 (464)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~-~~~~~~~~~~~~ 366 (464)
+|-.+....+. ...-..+........|...+..++... .+.++|+|..++.+..-+...|.. .+ +.++.+.
T Consensus 505 HPdll~~~~~~---~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~---ysylRmD 578 (923)
T KOG0387|consen 505 HPDLLDRRDED---EKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKG---YSYLRMD 578 (923)
T ss_pred CcccccCcccc---cccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCC---ceEEEec
Confidence 11111111000 000011112334556777777777654 567999999999999999999984 44 8999999
Q ss_pred CcccHHHHHHHHHHHhcCCe--eEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccE--EEEeeCc
Q 012427 367 GLQRQSVRSKTLKAFREGKI--QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKD 442 (464)
Q Consensus 367 ~~~~~~~r~~~~~~f~~~~~--~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~ 442 (464)
|..+...|..++++|.+++. -+|++|.+.+-|+|+.+++-||+|++.|+|+.=.|..-||.|.|+...+ +-+++..
T Consensus 579 GtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred CCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 99999999999999998763 3688999999999999999999999999999999999999999977655 5567777
Q ss_pred ccccchh
Q 012427 443 EKKGAIG 449 (464)
Q Consensus 443 ~~~~~~~ 449 (464)
+.++.++
T Consensus 659 TIEEkiY 665 (923)
T KOG0387|consen 659 TIEEKIY 665 (923)
T ss_pred cHHHHHH
Confidence 7777654
No 116
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.88 E-value=3.9e-21 Score=181.62 Aligned_cols=308 Identities=21% Similarity=0.295 Sum_probs=202.0
Q ss_pred hhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc-cCCccEEEEcccHHHHHHHHHHHHH-hccccCceEEEeecC
Q 012427 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQ 138 (464)
Q Consensus 61 ~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~v~~~~g~ 138 (464)
.++..+.+++.+++.|+||||||...- +.+...+ ....++-+.=|++--|...++.... .....|-.|+.-..-
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQip----QyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF 133 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQIP----QYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF 133 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCccccHh----HHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe
Confidence 344455568999999999999998733 3333322 1222455555888777766666543 333334444433332
Q ss_pred CchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh--hhHhhhh
Q 012427 139 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL--LREAYQA 216 (464)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~--~~~~~~~ 216 (464)
.+. ......|.+.|-+.|++-+... -.++++++||+||||.= ..+-.-.
T Consensus 134 ed~---------------------------ts~~TrikymTDG~LLRE~l~D--p~LskYsvIIlDEAHERsl~TDiLlG 184 (674)
T KOG0922|consen 134 EDS---------------------------TSKDTRIKYMTDGMLLREILKD--PLLSKYSVIILDEAHERSLHTDILLG 184 (674)
T ss_pred ccc---------------------------CCCceeEEEecchHHHHHHhcC--CccccccEEEEechhhhhhHHHHHHH
Confidence 221 1122489999999998866542 34789999999999952 1122222
Q ss_pred hHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeec
Q 012427 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (464)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 296 (464)
.++.++... +.++.|++|||+ +...+.+.+..-+++...
T Consensus 185 lLKki~~~R---------------------------------------~~LklIimSATl--da~kfS~yF~~a~i~~i~ 223 (674)
T KOG0922|consen 185 LLKKILKKR---------------------------------------PDLKLIIMSATL--DAEKFSEYFNNAPILTIP 223 (674)
T ss_pred HHHHHHhcC---------------------------------------CCceEEEEeeee--cHHHHHHHhcCCceEeec
Confidence 233333221 345899999998 455555555554444433
Q ss_pred CCccccCccccccceee-ccCCchHHHHHHHHH---hhCCCeEEEEecChhhHHHHHHHHhhcCc-----cceeEeeccC
Q 012427 297 GETRYKLPERLESYKLI-CESKLKPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGE-----LRIKIKEYSG 367 (464)
Q Consensus 297 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~---~~~~~~~lVf~~s~~~~~~l~~~l~~~~~-----~~~~~~~~~~ 367 (464)
+.. + .++.++.. ...+.-...+...++ ..+.+-+|||.+.+++.+..++.|.+... .+..+..+||
T Consensus 224 GR~-f----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~ 298 (674)
T KOG0922|consen 224 GRT-F----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYG 298 (674)
T ss_pred CCC-C----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecc
Confidence 332 1 11222222 122223333333333 34677899999999999999999987521 1114578999
Q ss_pred cccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecC------------------CCCcchhhhhhhhhhcC
Q 012427 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARA 429 (464)
Q Consensus 368 ~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~ 429 (464)
.++.+++..+.+.-..|..+++++|++++..+.|+++..||.-+. |-|..+-.||.|||||.
T Consensus 299 aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt 378 (674)
T KOG0922|consen 299 ALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT 378 (674)
T ss_pred cCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC
Confidence 999999998888877889999999999999999999999886543 34666789999999998
Q ss_pred CCCccEEEEeeCcccccch
Q 012427 430 GQLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 430 g~~g~~~~~~~~~~~~~~~ 448 (464)
| .|+|+-+++.++.+.+-
T Consensus 379 ~-pGkcyRLYte~~~~~~~ 396 (674)
T KOG0922|consen 379 G-PGKCYRLYTESAYDKMP 396 (674)
T ss_pred C-CceEEEeeeHHHHhhcc
Confidence 4 99999999998875554
No 117
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.88 E-value=8.9e-21 Score=189.74 Aligned_cols=309 Identities=20% Similarity=0.220 Sum_probs=203.0
Q ss_pred hhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh-ccccCceEEEeecCCc
Q 012427 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI-APAVGLSVGLAVGQSS 140 (464)
Q Consensus 62 i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~~~~~~~v~~~~g~~~ 140 (464)
+.+.+..++.+++.++||+|||...-..+++.-. ..+.++.+.=|++--|...++.+.+- ....|-.|+...-..+
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~ 134 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFES 134 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeec
Confidence 3444445888999999999999985555555443 12335555568886666666666543 3333434444333222
Q ss_pred hhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhh-hHhh-hhhH
Q 012427 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL-REAY-QAWL 218 (464)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~-~~~~-~~~~ 218 (464)
. ......|-++|.+.|.+.+... ..++.+++||+||+|+=. +..+ -..+
T Consensus 135 ~---------------------------~s~~Trik~mTdGiLlrei~~D--~~Ls~ys~vIiDEaHERSl~tDilLgll 185 (845)
T COG1643 135 K---------------------------VSPRTRIKVMTDGILLREIQND--PLLSGYSVVIIDEAHERSLNTDILLGLL 185 (845)
T ss_pred c---------------------------CCCCceeEEeccHHHHHHHhhC--cccccCCEEEEcchhhhhHHHHHHHHHH
Confidence 1 2233479999999999988753 347899999999999631 1111 1222
Q ss_pred HHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCC
Q 012427 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~ 298 (464)
..+....+ +.+++|++|||+ +...+...+-.-|++...+.
T Consensus 186 k~~~~~rr--------------------------------------~DLKiIimSATl--d~~rfs~~f~~apvi~i~GR 225 (845)
T COG1643 186 KDLLARRR--------------------------------------DDLKLIIMSATL--DAERFSAYFGNAPVIEIEGR 225 (845)
T ss_pred HHHHhhcC--------------------------------------CCceEEEEeccc--CHHHHHHHcCCCCEEEecCC
Confidence 23222221 235899999998 44555554443444333322
Q ss_pred ccccCcccccccee-eccCCc-hHHHHHHHHH---hhCCCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHH
Q 012427 299 TRYKLPERLESYKL-ICESKL-KPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQS 372 (464)
Q Consensus 299 ~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~l~---~~~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~ 372 (464)
. ..++.++. ....+. -...+...+. ....+.+|||.+...+.+..++.|.+.. .....+..+||.++.+
T Consensus 226 ~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~ 300 (845)
T COG1643 226 T-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAE 300 (845)
T ss_pred c-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHH
Confidence 2 12222221 111222 2233333333 2357789999999999999999998722 2458899999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC------------------CCcchhhhhhhhhhcCCCCcc
Q 012427 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------------------AYIKTYIHRAGRTARAGQLGR 434 (464)
Q Consensus 373 ~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~g~ 434 (464)
++..+++--..+..+|+++|++++.++.||++..||.-+.. -|..+..||.||+||- ..|.
T Consensus 301 eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGi 379 (845)
T COG1643 301 EQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGI 379 (845)
T ss_pred HHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCce
Confidence 99888776666666799999999999999999999976532 4555778999999998 5999
Q ss_pred EEEEeeCcccccch
Q 012427 435 CFTLLHKDEKKGAI 448 (464)
Q Consensus 435 ~~~~~~~~~~~~~~ 448 (464)
|+-+++.++...+.
T Consensus 380 cyRLyse~~~~~~~ 393 (845)
T COG1643 380 CYRLYSEEDFLAFP 393 (845)
T ss_pred EEEecCHHHHHhcc
Confidence 99999987666443
No 118
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.88 E-value=1.5e-20 Score=196.21 Aligned_cols=125 Identities=15% Similarity=0.183 Sum_probs=96.1
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCc-cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCC--CCeE
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG--VNNV 407 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~--~~~v 407 (464)
.++++||+++|.+..+.+++.|+.... .++.+. .+ +++...|..++++|+.++..||++|..++||||+|+ +++|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll-~Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLL-AQ-GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEE-ec-CCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEE
Confidence 567999999999999999999976431 112222 22 343345789999999988899999999999999997 6789
Q ss_pred EEecCCCC------------------------------cchhhhhhhhhhcCCCCccEEEEeeCcccccchhhccccccc
Q 012427 408 VNYDKPAY------------------------------IKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAIGRSLFHQSR 457 (464)
Q Consensus 408 i~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 457 (464)
|+.+.|.. +..+.|.+||..|...+.-+++++|.+-...-|++.+.+..|
T Consensus 829 iI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 829 VIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 99887631 223479999999998777678788888777778777777655
No 119
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.7e-21 Score=190.57 Aligned_cols=322 Identities=20% Similarity=0.193 Sum_probs=201.3
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.+++-|..++..+..........++.+.||+|||-+|+-++.+.+..+ ..+|+|+|-+.|..|+.+.|+..+ |
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G----kqvLvLVPEI~Ltpq~~~rf~~rF---g 270 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG----KQVLVLVPEIALTPQLLARFKARF---G 270 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC----CEEEEEeccccchHHHHHHHHHHh---C
Confidence 688899999998887652337799999999999999998777777754 379999999999999999988765 5
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhc-CCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012427 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
.++..++++-+...+ .+.|..+.. ...|+|+|-..+ ...+.++++||+||-|.
T Consensus 271 ~~v~vlHS~Ls~~er------------------~~~W~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEHD 324 (730)
T COG1198 271 AKVAVLHSGLSPGER------------------YRVWRRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEHD 324 (730)
T ss_pred CChhhhcccCChHHH------------------HHHHHHHhcCCceEEEEechhh--------cCchhhccEEEEecccc
Confidence 788899998876666 455555654 489999994332 24588999999999995
Q ss_pred hhhH---hhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhc
Q 012427 209 LLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (464)
Q Consensus 209 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 285 (464)
-.-. +.....+.+.-... ...+..+|+-|||+.-.......
T Consensus 325 ~sYKq~~~prYhARdvA~~Ra------------------------------------~~~~~pvvLgSATPSLES~~~~~ 368 (730)
T COG1198 325 SSYKQEDGPRYHARDVAVLRA------------------------------------KKENAPVVLGSATPSLESYANAE 368 (730)
T ss_pred ccccCCcCCCcCHHHHHHHHH------------------------------------HHhCCCEEEecCCCCHHHHHhhh
Confidence 3111 11111111111000 00223678888887533322222
Q ss_pred ccccCCeeeecCCccccCccccccceeeccCCch----HHHHHHHHHh--hCCCeEEEEecChhhH--------------
Q 012427 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLK----PLYLVALLQS--LGEEKCIVFTSSVEST-------------- 345 (464)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~--~~~~~~lVf~~s~~~~-------------- 345 (464)
.+................ ..+............ -..+.+.++. ..++++|+|.+.+-.+
T Consensus 369 ~g~y~~~~L~~R~~~a~~-p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~C 447 (730)
T COG1198 369 SGKYKLLRLTNRAGRARL-PRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAEC 447 (730)
T ss_pred cCceEEEEccccccccCC-CcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccC
Confidence 221121222222221111 111111111111111 0223333322 2455666666655333
Q ss_pred ----------------------------------------------HHHHHHHhhcCccceeEeeccCcccHHH--HHHH
Q 012427 346 ----------------------------------------------HRLCTLLNHFGELRIKIKEYSGLQRQSV--RSKT 377 (464)
Q Consensus 346 ----------------------------------------------~~l~~~l~~~~~~~~~~~~~~~~~~~~~--r~~~ 377 (464)
+++++.|++. .++.++..+.++.+... -+..
T Consensus 448 p~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~-FP~~rv~r~d~Dtt~~k~~~~~~ 526 (730)
T COG1198 448 PNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL-FPGARIIRIDSDTTRRKGALEDL 526 (730)
T ss_pred CCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH-CCCCcEEEEccccccchhhHHHH
Confidence 2333333222 23356777777666533 4577
Q ss_pred HHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCC------------cchhhhhhhhhhcCCCCccEEEEeeCc
Q 012427 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY------------IKTYIHRAGRTARAGQLGRCFTLLHKD 442 (464)
Q Consensus 378 ~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 442 (464)
++.|..|+.+|||+|+++..|.|+|+++.|.+.+.... ...+.|..|||||.++.|.+++=...-
T Consensus 527 l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P 603 (730)
T COG1198 527 LDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNP 603 (730)
T ss_pred HHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCC
Confidence 99999999999999999999999999999888775422 335789999999998899887655443
No 120
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.88 E-value=1.6e-20 Score=183.88 Aligned_cols=125 Identities=12% Similarity=0.080 Sum_probs=94.5
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcC----CeeEEEEcccccccCCC-----
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG----KIQVLVSSDAMTRGMDV----- 401 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~----~~~iLi~t~~~~~Gidi----- 401 (464)
.+++++|.+.|....+.+++.|...- .+ ...++|..+ .+.+++++|+.. +..||++|..+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l--~~-~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~ 543 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGI--PA-EIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPV 543 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhc--CC-CEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccC
Confidence 57789999999999999999997632 22 344556543 256788999874 68999999999999999
Q ss_pred ---CC--CCeEEEecCCCC-------------------------cchhhhhhhhhhcCCCC--ccEEEEeeCcccccchh
Q 012427 402 ---EG--VNNVVNYDKPAY-------------------------IKTYIHRAGRTARAGQL--GRCFTLLHKDEKKGAIG 449 (464)
Q Consensus 402 ---p~--~~~vi~~~~~~s-------------------------~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~~~~~ 449 (464)
|+ +++|||..+|.. ...+.|-+||..|...+ .-+++++|++ ....|+
T Consensus 544 ~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R-~~~~yg 622 (636)
T TIGR03117 544 SPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR-IHWPYM 622 (636)
T ss_pred CCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC-CCchhH
Confidence 44 889999887732 22457999999999766 5566677777 777888
Q ss_pred hccccccccccc
Q 012427 450 RSLFHQSRVLGV 461 (464)
Q Consensus 450 ~~~~~~~~~~~~ 461 (464)
+.+.+..+.+=.
T Consensus 623 ~~~~~~~~~~~~ 634 (636)
T TIGR03117 623 ESWQESVKTILD 634 (636)
T ss_pred HHHHHHHHHHhc
Confidence 877776665433
No 121
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.7e-21 Score=194.05 Aligned_cols=129 Identities=20% Similarity=0.224 Sum_probs=111.3
Q ss_pred eccCCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEE
Q 012427 313 ICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (464)
Q Consensus 313 ~~~~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi 390 (464)
......|...+...+... .+.++||||+|++.++.+++.|.+.+ ++...+|+ ...+|++.+-.|..+...|+|
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g---I~h~vLna--kq~~REa~Iia~AG~~g~VtI 651 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR---IAHNVLNA--KQHDREAEIVAEAGQKGAVTI 651 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC---CCceeecC--CHHHhHHHHHHhcCCCCeEEE
Confidence 445556888888888554 68899999999999999999999887 78888997 466888999999999999999
Q ss_pred EcccccccCCCC---CCC-----eEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012427 391 SSDAMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 391 ~t~~~~~Gidip---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
||+++++|+||+ ++. +||.+..|.|.+.+.|++||+||.|.+|.+.+|++.+|.-.
T Consensus 652 ATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 652 ATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred eccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 999999999999 443 45788889999999999999999999999999998876543
No 122
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.87 E-value=2.7e-20 Score=182.46 Aligned_cols=378 Identities=20% Similarity=0.123 Sum_probs=220.4
Q ss_pred CccchhhHHhHHhhhCCCCCC------CCEEEECCCCchhHHHhHHHHHHHHHhhccC---CccEEEEcccHHHHHHHHH
Q 012427 49 SSLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLRALVVLPTRDLALQVKD 119 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~------~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~---~~~~lil~P~~~L~~q~~~ 119 (464)
..++|+|++.+.-+++.+... ..+|+.-.+|+|||+.....++..+...+.. -.+.|||+|. .|+..|.+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 479999999988877665433 4589999999999999777677666665320 0579999998 68889999
Q ss_pred HHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCcc
Q 012427 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (464)
Q Consensus 120 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~ 199 (464)
+|.+|.....+....+++..+......... -..........|++.+++.+.+.... +....++
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~si--------------l~~~~~~~~~~vli~sye~~~~~~~~---il~~~~g 378 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSI--------------LFLGYKQFTTPVLIISYETASDYCRK---ILLIRPG 378 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHH--------------HHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCC
Confidence 999998865688888888776311000000 00011122347889999998766554 4456799
Q ss_pred EEEEehhhHhhhHhhhhhHHHHHHhc---------ccccccccc----ccccccccccccchhhhcccc---c-------
Q 012427 200 YLVVDETDRLLREAYQAWLPTVLQLT---------RSDNENRFS----DASTFLPSAFGSLKTIRRCGV---E------- 256 (464)
Q Consensus 200 ~iIvDE~H~~~~~~~~~~~~~~~~~~---------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~------- 256 (464)
++|+||.|++-+.... +...+..+ +++.++.+. ......|++++.......... .
T Consensus 379 lLVcDEGHrlkN~~s~--~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~ 456 (776)
T KOG0390|consen 379 LLVCDEGHRLKNSDSL--TLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADA 456 (776)
T ss_pred eEEECCCCCccchhhH--HHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCc
Confidence 9999999987443221 11222211 112222222 122333444444322211100 0
Q ss_pred --------------------------cccCCC--CCCceeeEEeeeeeecCccc--hhc-------------------cc
Q 012427 257 --------------------------RGFKDK--PYPRLVKMVLSATLTQDPNK--LAQ-------------------LD 287 (464)
Q Consensus 257 --------------------------~~~~~~--~~~~~~~i~~sat~~~~~~~--~~~-------------------~~ 287 (464)
...... |.....++++..|..+.... +.. ..
T Consensus 457 s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~ 536 (776)
T KOG0390|consen 457 SEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKL 536 (776)
T ss_pred chhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHH
Confidence 011112 22233344444443321000 000 01
Q ss_pred ccCCeeeecCC-----ccccCcc------ccccceeeccCCchHHHHHHHHHhhCCCeEEE---EecChhhHHHHHHHHh
Q 012427 288 LHHPLFLTTGE-----TRYKLPE------RLESYKLICESKLKPLYLVALLQSLGEEKCIV---FTSSVESTHRLCTLLN 353 (464)
Q Consensus 288 ~~~~~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lV---f~~s~~~~~~l~~~l~ 353 (464)
..+|..+.... .....+. ..+..........+...+..++... ..++++ ++....+...+.+.+-
T Consensus 537 cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~-~ek~~~~~v~Isny~~tldl~e~~~ 615 (776)
T KOG0390|consen 537 CNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI-REKLLVKSVLISNYTQTLDLFEQLC 615 (776)
T ss_pred hcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH-hhhcceEEEEeccHHHHHHHHHHHH
Confidence 11222221000 0011111 1111111222344555666665332 233333 3344444444444443
Q ss_pred hcCccceeEeeccCcccHHHHHHHHHHHhcCC---eeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCC
Q 012427 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (464)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 430 (464)
.+. ++.+..++|.|+..+|+.+++.|.+-. .-+|.++.+.++|+++-+++.+|+++++|++..-.|+++||.|.|
T Consensus 616 ~~~--g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdG 693 (776)
T KOG0390|consen 616 RWR--GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDG 693 (776)
T ss_pred hhc--CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCC
Confidence 322 489999999999999999999998543 346777889999999999999999999999999999999999999
Q ss_pred CCccEE--EEeeCcccccchh
Q 012427 431 QLGRCF--TLLHKDEKKGAIG 449 (464)
Q Consensus 431 ~~g~~~--~~~~~~~~~~~~~ 449 (464)
+...|+ .+++....++.+.
T Consensus 694 QKk~v~iYrLlatGtiEEk~~ 714 (776)
T KOG0390|consen 694 QKKPVYIYRLLATGTIEEKIY 714 (776)
T ss_pred CcceEEEEEeecCCCchHHHH
Confidence 877664 4566666665443
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=4.9e-20 Score=178.70 Aligned_cols=356 Identities=18% Similarity=0.196 Sum_probs=217.5
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
+|. .|++.|.-....++. |. ++.+.||.|||+++.+++....+.+ ..+.+++|+..||.|.++++..+.
T Consensus 75 lg~-r~ydvQlig~l~Ll~----G~--VaEM~TGEGKTLvA~l~a~l~AL~G----~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLA----GD--VIEMATGEGKTLAGAIAAAGYALQG----RRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHhC----CC--cccccCCCCHHHHHHHHHHHHHHcC----CCeEEEcCCHHHHHHHHHHHHHHH
Confidence 454 788888766544432 43 8899999999999998888776654 369999999999999999999999
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHH-Hhhhc-----CCCcCCCCcc
Q 012427 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-DHINA-----TRGFTLEHLC 199 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~-~~l~~-----~~~~~~~~~~ 199 (464)
..+|+.++++.++.+...+... -.++|+.+|...|. +.|+. ........+.
T Consensus 144 ~~LGLsvg~i~~~~~~~err~a-----------------------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~ 200 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAA-----------------------YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPD 200 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHH-----------------------HcCCCEEcCCcccccccchhhhccChHhhcCCccc
Confidence 9999999999988765443222 24699999986652 22221 1112346688
Q ss_pred EEEEehhhHhhhH---------------hhhhhHHHHHHhccccccc---------------------------cccccc
Q 012427 200 YLVVDETDRLLRE---------------AYQAWLPTVLQLTRSDNEN---------------------------RFSDAS 237 (464)
Q Consensus 200 ~iIvDE~H~~~~~---------------~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~ 237 (464)
+.||||+|.++-+ .....+..+...+...... .++...
T Consensus 201 faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~ 280 (764)
T PRK12326 201 VAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEH 280 (764)
T ss_pred eeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcch
Confidence 9999999976311 1222233333322221000 000000
Q ss_pred --ccccc---ccccchhhhcc-------c---cccccCC---------------------CC-----------------C
Q 012427 238 --TFLPS---AFGSLKTIRRC-------G---VERGFKD---------------------KP-----------------Y 264 (464)
Q Consensus 238 --~~~~~---~~~~~~~~~~~-------~---~~~~~~~---------------------~~-----------------~ 264 (464)
..+.. .+.+...+.+. + +...+.. .. .
T Consensus 281 ~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr 360 (764)
T PRK12326 281 VGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIG 360 (764)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHH
Confidence 00000 00000000000 0 0000000 00 0
Q ss_pred CceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCCeEEEEecCh
Q 012427 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV 342 (464)
Q Consensus 265 ~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~s~ 342 (464)
...+..+||+|......++...+-.+.+.++.... ....... ..+......|...+.+.+.. ..++++||.+.|+
T Consensus 361 ~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp--~~R~d~~-d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI 437 (764)
T PRK12326 361 RYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKP--NIREDEA-DRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDV 437 (764)
T ss_pred hcchheeecCCChhHHHHHHHHhCCcEEECCCCCC--ceeecCC-CceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCH
Confidence 01134678888755444444433333333322211 1111111 12233344566666665543 3688999999999
Q ss_pred hhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCC-eeEEEEcccccccCCCCCC-------------C--e
Q 012427 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEGV-------------N--N 406 (464)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~iLi~t~~~~~Gidip~~-------------~--~ 406 (464)
+..+.+.+.|.+.+ ++...+++.-...| .+++.. .|. -.|.|||+|+++|.||.=- . |
T Consensus 438 ~~SE~ls~~L~~~g---I~h~vLNAk~~~~E-A~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLh 511 (764)
T PRK12326 438 AESEELAERLRAAG---VPAVVLNAKNDAEE-ARIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLH 511 (764)
T ss_pred HHHHHHHHHHHhCC---CcceeeccCchHhH-HHHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcE
Confidence 99999999999877 77777877644333 334442 343 3689999999999999611 1 7
Q ss_pred EEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012427 407 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 407 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
||....+.|.+.--|..||+||.|.+|.+-.|++=+|.
T Consensus 512 VIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 512 VIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred EEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 88888999999999999999999999999988876554
No 124
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.86 E-value=3.3e-20 Score=168.48 Aligned_cols=336 Identities=14% Similarity=0.128 Sum_probs=218.5
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 47 ~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
-++.|-|+|++-+...++ +|..+++...+|-|||+.++..+..+.. .+..||+||.. +-..|++++..|++
T Consensus 195 Lvs~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyra-----EwplliVcPAs-vrftWa~al~r~lp 265 (689)
T KOG1000|consen 195 LVSRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRA-----EWPLLIVCPAS-VRFTWAKALNRFLP 265 (689)
T ss_pred HHHhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhh-----cCcEEEEecHH-HhHHHHHHHHHhcc
Confidence 345788999998766555 7899999999999999997754443322 33699999985 55679999999987
Q ss_pred ccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehh
Q 012427 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (464)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~ 206 (464)
... ++.++.+..+.... +.....|.|.+|+.+..+-.. +.-.++.++|+||+
T Consensus 266 s~~-pi~vv~~~~D~~~~------------------------~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEs 317 (689)
T KOG1000|consen 266 SIH-PIFVVDKSSDPLPD------------------------VCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDES 317 (689)
T ss_pred ccc-ceEEEecccCCccc------------------------cccCCeEEEEEHHHHHHHHHH---HhcccceEEEEech
Confidence 653 35555555543221 233457999999998765543 33345899999999
Q ss_pred hHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccc----
Q 012427 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK---- 282 (464)
Q Consensus 207 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~---- 282 (464)
|++-+..-.. .+.+...+.. ..+.|++|+|+.-..-.
T Consensus 318 H~Lk~sktkr-~Ka~~dllk~--------------------------------------akhvILLSGTPavSRP~elyt 358 (689)
T KOG1000|consen 318 HMLKDSKTKR-TKAATDLLKV--------------------------------------AKHVILLSGTPAVSRPSELYT 358 (689)
T ss_pred hhhhccchhh-hhhhhhHHHH--------------------------------------hhheEEecCCcccCCchhhhh
Confidence 9874432221 2223222211 11456667766422100
Q ss_pred ------------hhc--ccccC----CeeeecCC-----------------------ccccCccccccceee--------
Q 012427 283 ------------LAQ--LDLHH----PLFLTTGE-----------------------TRYKLPERLESYKLI-------- 313 (464)
Q Consensus 283 ------------~~~--~~~~~----~~~~~~~~-----------------------~~~~~~~~~~~~~~~-------- 313 (464)
+.+ ...++ ...+.... -...+|...+.....
T Consensus 359 qi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~ 438 (689)
T KOG1000|consen 359 QIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDAR 438 (689)
T ss_pred hhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchH
Confidence 000 00000 00000000 000000000000000
Q ss_pred -----------------------------ccCCchHHHHHHHHHh------hCCCeEEEEecChhhHHHHHHHHhhcCcc
Q 012427 314 -----------------------------CESKLKPLYLVALLQS------LGEEKCIVFTSSVESTHRLCTLLNHFGEL 358 (464)
Q Consensus 314 -----------------------------~~~~~~~~~l~~~l~~------~~~~~~lVf~~s~~~~~~l~~~l~~~~~~ 358 (464)
..-..|...+.+.+.. .++.|.+||+.+....+.+...+.+.+
T Consensus 439 ~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~-- 516 (689)
T KOG1000|consen 439 MDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRK-- 516 (689)
T ss_pred HHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcC--
Confidence 0011122233333333 145699999999999999999998877
Q ss_pred ceeEeeccCcccHHHHHHHHHHHhcCC-eeE-EEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccE-
Q 012427 359 RIKIKEYSGLQRQSVRSKTLKAFREGK-IQV-LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC- 435 (464)
Q Consensus 359 ~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~i-Li~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~- 435 (464)
+....+.|..+..+|..+.+.|..++ ..| +++..+++.|+++...+.|++..+++++..++|.=-|++|.|+...+
T Consensus 517 -vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~ 595 (689)
T KOG1000|consen 517 -VGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVF 595 (689)
T ss_pred -CCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceee
Confidence 78888999999999999999999554 444 66778889999999999999999999999999999999999987755
Q ss_pred -EEEeeCcccccchhhccccccccccc
Q 012427 436 -FTLLHKDEKKGAIGRSLFHQSRVLGV 461 (464)
Q Consensus 436 -~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (464)
+.++.+.+.+++.-..+.....+++.
T Consensus 596 v~ylvAKgT~Ddy~Wp~l~~KL~vl~s 622 (689)
T KOG1000|consen 596 VQYLVAKGTADDYMWPMLQQKLDVLGS 622 (689)
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHhh
Confidence 55667888888776777777766653
No 125
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.85 E-value=1.2e-20 Score=180.28 Aligned_cols=372 Identities=20% Similarity=0.212 Sum_probs=225.6
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
+|.+||.--+..+.-....+-++|+...+|-|||...+ +-+..+.+.+..+ .-|||||+..|- .|.+++.+||+ .
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g~~g-pHLVVvPsSTle-NWlrEf~kwCP--s 473 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIGNPG-PHLVVVPSSTLE-NWLREFAKWCP--S 473 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcCCCC-CcEEEecchhHH-HHHHHHHHhCC--c
Confidence 48889987766554333456778999999999998743 4555555544444 589999998764 58999999998 4
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh
Q 012427 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~ 209 (464)
+.|..++|...-..+++...+. -....+|+++||......-.....+.-.+++++|+||+|.+
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~-----------------~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmL 536 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKK-----------------NKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHML 536 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhc-----------------cCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhh
Confidence 7899999988655554443321 12347999999987642111111123456889999999987
Q ss_pred hhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccc-----------------------------------
Q 012427 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG----------------------------------- 254 (464)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 254 (464)
-+....++ .+++... ...+...+++++...+.++-.+....
T Consensus 537 KN~~SeRy-~~LM~I~---An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qer 612 (941)
T KOG0389|consen 537 KNRTSERY-KHLMSIN---ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQER 612 (941)
T ss_pred hccchHHH-HHhcccc---ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHH
Confidence 55443322 1111111 11111112222222221110000000
Q ss_pred -----------ccc----ccCCCCCCceeeEE---eeeeeecCccchhccc-------------------------ccCC
Q 012427 255 -----------VER----GFKDKPYPRLVKMV---LSATLTQDPNKLAQLD-------------------------LHHP 291 (464)
Q Consensus 255 -----------~~~----~~~~~~~~~~~~i~---~sat~~~~~~~~~~~~-------------------------~~~~ 291 (464)
+.+ .......++.+.|- |+..-...-....+.. -.+|
T Consensus 613 IsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHP 692 (941)
T KOG0389|consen 613 ISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHP 692 (941)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcCh
Confidence 000 01111122222222 2211100000000000 0011
Q ss_pred eeeecCCccc---------------------cCcccc------------ccce------e---eccCCchHHHHHHHHHh
Q 012427 292 LFLTTGETRY---------------------KLPERL------------ESYK------L---ICESKLKPLYLVALLQS 329 (464)
Q Consensus 292 ~~~~~~~~~~---------------------~~~~~~------------~~~~------~---~~~~~~~~~~l~~~l~~ 329 (464)
..+..-.... .+.+.+ ..+. + ..-...|...|..+|..
T Consensus 693 LL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~ 772 (941)
T KOG0389|consen 693 LLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPK 772 (941)
T ss_pred hHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHH
Confidence 1110000000 000000 0000 0 01133566677777766
Q ss_pred h--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCC--eeEEEEcccccccCCCCCCC
Q 012427 330 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVN 405 (464)
Q Consensus 330 ~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~iLi~t~~~~~Gidip~~~ 405 (464)
. .+.++|+|........-+..+|...+ +....+.|.....+|+.+++.|..++ .-+|++|.+.+.|||+..++
T Consensus 773 ~k~~G~RVLiFSQFTqmLDILE~~L~~l~---~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An 849 (941)
T KOG0389|consen 773 IKKKGDRVLIFSQFTQMLDILEVVLDTLG---YKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCAN 849 (941)
T ss_pred HhhcCCEEEEeeHHHHHHHHHHHHHHhcC---ceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccc
Confidence 5 46799999999999999999998777 99999999999999999999999765 34689999999999999999
Q ss_pred eEEEecCCCCcchhhhhhhhhhcCCCCccE--EEEeeCcccccchhh
Q 012427 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKDEKKGAIGR 450 (464)
Q Consensus 406 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~~~~~~~ 450 (464)
+||+++...++-.=.|.--|++|.|+...+ +.++++++.++-+.+
T Consensus 850 ~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~ 896 (941)
T KOG0389|consen 850 TVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILR 896 (941)
T ss_pred eEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHH
Confidence 999999999999999999999999987755 667888888887653
No 126
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.85 E-value=6.1e-19 Score=178.57 Aligned_cols=121 Identities=21% Similarity=0.273 Sum_probs=90.2
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhc----CCeeEEEEcccccccCCCCC--C
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE----GKIQVLVSSDAMTRGMDVEG--V 404 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~iLi~t~~~~~Gidip~--~ 404 (464)
.++++||+++|.+..+.+++.|.... +.. ...++.. .+..+++.|++ ++..||++|..+++|||+|+ +
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~--~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l 606 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDL--RLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYL 606 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhc--CCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCce
Confidence 45568999999999999999987532 122 3335532 46678877764 66789999999999999997 7
Q ss_pred CeEEEecCCCC------------------------------cchhhhhhhhhhcCCCCccEEEEeeCcccccchhhcccc
Q 012427 405 NNVVNYDKPAY------------------------------IKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAIGRSLFH 454 (464)
Q Consensus 405 ~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 454 (464)
++||+.+.|.. ...+.|.+||..|...+.-+++++|++-...-|++.+.+
T Consensus 607 ~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~ 686 (697)
T PRK11747 607 TQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLD 686 (697)
T ss_pred EEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHH
Confidence 89999987731 123469999999987676677788887777777777666
Q ss_pred ccc
Q 012427 455 QSR 457 (464)
Q Consensus 455 ~~~ 457 (464)
..|
T Consensus 687 sLP 689 (697)
T PRK11747 687 ALP 689 (697)
T ss_pred hCC
Confidence 655
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=2e-18 Score=173.45 Aligned_cols=121 Identities=22% Similarity=0.283 Sum_probs=107.1
Q ss_pred chHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccc
Q 012427 318 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (464)
Q Consensus 318 ~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~ 395 (464)
.+...+...+... .+.+++|||++...++.+++.|.+.+ +.+..+|++++..+|..+++.|+.|+.+++|||+.+
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g---i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L 506 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLL 506 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc---eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHH
Confidence 4455555555443 46789999999999999999999877 899999999999999999999999999999999999
Q ss_pred cccCCCCCCCeEEEecC-----CCCcchhhhhhhhhhcCCCCccEEEEeeCc
Q 012427 396 TRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (464)
Q Consensus 396 ~~Gidip~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 442 (464)
++|+|+|++++||+++. |.+..+|+||+||+||. ..|.++.|++..
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 99999999999999875 67899999999999997 789999999853
No 128
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.5e-19 Score=172.75 Aligned_cols=318 Identities=17% Similarity=0.217 Sum_probs=199.1
Q ss_pred hhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc------cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEe
Q 012427 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135 (464)
Q Consensus 62 i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 135 (464)
|.+++..+--+|++|.||+|||...- +++...+ ....-+-|--|++.-+.-+++....-+..++-+|...
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvP----QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVP----QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccch----HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 45555567779999999999998733 2332221 1122344555888877777666543333345444333
Q ss_pred ecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh--hhHh
Q 012427 136 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL--LREA 213 (464)
Q Consensus 136 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~--~~~~ 213 (464)
...... +.....|-++|-+.|++-+.. .|.+.+++.||+||||.- ..+-
T Consensus 340 IRfd~t---------------------------i~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDI 390 (1172)
T KOG0926|consen 340 IRFDGT---------------------------IGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDI 390 (1172)
T ss_pred EEeccc---------------------------cCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHH
Confidence 322211 123348999999999987775 367889999999999952 1111
Q ss_pred hhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCc-cchhcccccCCe
Q 012427 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-NKLAQLDLHHPL 292 (464)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~-~~~~~~~~~~~~ 292 (464)
.-..+.++..+-.... -.+.-..+++.|+||||+.-.. ..-..++-..|.
T Consensus 391 LiGmLSRiV~LR~k~~-----------------------------ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP 441 (1172)
T KOG0926|consen 391 LIGMLSRIVPLRQKYY-----------------------------KEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP 441 (1172)
T ss_pred HHHHHHHHHHHHHHHh-----------------------------hhhcccCceeEEEEeeeEEecccccCceecCCCCc
Confidence 2222333332221100 0112235779999999985432 222333322333
Q ss_pred eeecCCccccCccccccceeeccCCc---hHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhc-----C--------
Q 012427 293 FLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-----G-------- 356 (464)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~-----~-------- 356 (464)
++......+..... +....+.+. ...-...+-++.+.|.+|||+..+.+...+++.|++. +
T Consensus 442 likVdARQfPVsIH---F~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~ 518 (1172)
T KOG0926|consen 442 LIKVDARQFPVSIH---FNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNV 518 (1172)
T ss_pred eeeeecccCceEEE---eccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhh
Confidence 44444443333221 112222222 2222344445668899999999999999999999861 0
Q ss_pred --------------------------------------------------------------------------------
Q 012427 357 -------------------------------------------------------------------------------- 356 (464)
Q Consensus 357 -------------------------------------------------------------------------------- 356 (464)
T Consensus 519 k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~ 598 (1172)
T KOG0926|consen 519 KAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKG 598 (1172)
T ss_pred hhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccC
Confidence
Q ss_pred ---ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC--------C----------C
Q 012427 357 ---ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--------A----------Y 415 (464)
Q Consensus 357 ---~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~--------~----------s 415 (464)
..+..|..+++-++.+.+.++++.--.|..-.+|+|+.++..+.||++..||..+.. . |
T Consensus 599 ~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiS 678 (1172)
T KOG0926|consen 599 KFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWIS 678 (1172)
T ss_pred CCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeee
Confidence 013457788888888888888888778888899999999999999999999975532 2 2
Q ss_pred cchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012427 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 416 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
..+--||+|||||.| .|+|+.+++..-..
T Consensus 679 kASadQRAGRAGRtg-pGHcYRLYSSAVf~ 707 (1172)
T KOG0926|consen 679 KASADQRAGRAGRTG-PGHCYRLYSSAVFS 707 (1172)
T ss_pred ccccchhccccCCCC-CCceeehhhhHHhh
Confidence 334469999999996 99999999765433
No 129
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.8e-19 Score=179.12 Aligned_cols=357 Identities=17% Similarity=0.196 Sum_probs=214.9
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 47 ~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
| -.+++.|.-. .+.-.+.-++.+.||.|||+++.++++-..+.+ ..+.+++|+..||.|.++++..+..
T Consensus 80 G-m~~ydVQliG------g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G----~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 80 G-MRHFDVQLIG------GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSG----KGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred C-CCcchhHHHh------hhHhccCccccccCCCCChHHHHHHHHHHHHcC----CCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 5 3677777432 222245569999999999999999888766654 3699999999999999999999999
Q ss_pred ccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HHhhhcC-----CCcCCCCccE
Q 012427 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLCY 200 (464)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~~l~~~-----~~~~~~~~~~ 200 (464)
.+|++++++.++.+...+... -.++|+++|...+ .+.|... .......+.+
T Consensus 149 ~lGl~v~~i~~~~~~~err~~-----------------------Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~ 205 (913)
T PRK13103 149 FLGLSVGIVTPFQPPEEKRAA-----------------------YAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNF 205 (913)
T ss_pred ccCCEEEEECCCCCHHHHHHH-----------------------hcCCEEEEcccccccchhhccceechhhhcccccce
Confidence 999999999888765554222 2269999998775 2222211 1122477899
Q ss_pred EEEehhhHhhhH----------------hhhhhHHHHHHhcccc---------ccccc-----------cccc-----cc
Q 012427 201 LVVDETDRLLRE----------------AYQAWLPTVLQLTRSD---------NENRF-----------SDAS-----TF 239 (464)
Q Consensus 201 iIvDE~H~~~~~----------------~~~~~~~~~~~~~~~~---------~~~~~-----------~~~~-----~~ 239 (464)
+||||+|.++=+ .....+..+...+... ....+ .+.+ ..
T Consensus 206 aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~ 285 (913)
T PRK13103 206 AVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEM 285 (913)
T ss_pred eEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHH
Confidence 999999976311 1122222222222100 00000 0000 00
Q ss_pred c---------ccc---------------cccchhhhccc----------cccccCC---------------------CCC
Q 012427 240 L---------PSA---------------FGSLKTIRRCG----------VERGFKD---------------------KPY 264 (464)
Q Consensus 240 ~---------~~~---------------~~~~~~~~~~~----------~~~~~~~---------------------~~~ 264 (464)
+ ... +.+...+.+.. +...+.. ...
T Consensus 286 ~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I 365 (913)
T PRK13103 286 LTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNI 365 (913)
T ss_pred hhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCc
Confidence 0 000 00000000000 0000000 000
Q ss_pred C-----------------ceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHH
Q 012427 265 P-----------------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327 (464)
Q Consensus 265 ~-----------------~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 327 (464)
. ..+.-+||+|......++...+-.+.+.++.... ........ .+......|..++.+.+
T Consensus 366 ~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP--~~R~D~~d-~vy~t~~eK~~Ai~~ei 442 (913)
T PRK13103 366 QAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKP--LARKDFND-LVYLTAEEKYAAIITDI 442 (913)
T ss_pred CCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCC--cccccCCC-eEEcCHHHHHHHHHHHH
Confidence 0 1124567777644444333333333333332221 11111111 23344556777766666
Q ss_pred Hhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCC-eeEEEEcccccccCCCC-C
Q 012427 328 QSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVE-G 403 (464)
Q Consensus 328 ~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~iLi~t~~~~~Gidip-~ 403 (464)
... .++++||-+.|++..+.+.+.|++.+ ++..++++.....| .+++. ..|. -.|.|||+|+++|.||. +
T Consensus 443 ~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~g---i~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRGTDIkLg 516 (913)
T PRK13103 443 KECMALGRPVLVGTATIETSEHMSNLLKKEG---IEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRGTDILLG 516 (913)
T ss_pred HHHHhCCCCEEEEeCCHHHHHHHHHHHHHcC---CcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCCCCEecC
Confidence 543 68899999999999999999999876 55556666544333 23333 2343 46899999999999994 1
Q ss_pred -------------------------------C---C--eEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012427 404 -------------------------------V---N--NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 404 -------------------------------~---~--~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
+ . +||....+.|.+.=-|..||+||.|.+|.+-.|++-+|.-.
T Consensus 517 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 517 GNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred CchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 1 1 78888899999999999999999999999999987765443
No 130
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=2.2e-19 Score=168.45 Aligned_cols=300 Identities=19% Similarity=0.243 Sum_probs=194.9
Q ss_pred hCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc--cCCccEEEEcccHHHHHHHHHH-HHHhccccCceEEEeecCC
Q 012427 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDV-FAAIAPAVGLSVGLAVGQS 139 (464)
Q Consensus 63 ~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~--~~~~~~lil~P~~~L~~q~~~~-~~~~~~~~~~~v~~~~g~~ 139 (464)
+.++..++-+++.|.||||||...- +++...+ .++.++-+-=|++.-|...+.. .+++...+|-.|+.-....
T Consensus 274 l~av~e~QVLiI~GeTGSGKTTQiP----QyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFE 349 (902)
T KOG0923|consen 274 LKAVKEHQVLIIVGETGSGKTTQIP----QYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFE 349 (902)
T ss_pred HHHHHhCcEEEEEcCCCCCcccccc----HHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEec
Confidence 4445568999999999999998733 3333332 1233355555888776655444 3445444444443322211
Q ss_pred chhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh--hhHhhhhh
Q 012427 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL--LREAYQAW 217 (464)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~--~~~~~~~~ 217 (464)
+. ......+=++|-++|++-+.. ...+.++++|||||||.- ..+-....
T Consensus 350 dc---------------------------TSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL~TDILfgL 400 (902)
T KOG0923|consen 350 DC---------------------------TSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTLHTDILFGL 400 (902)
T ss_pred cc---------------------------cCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhhhhhHHHHH
Confidence 10 112225668999999885554 366889999999999952 11111222
Q ss_pred HHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecC
Q 012427 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (464)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 297 (464)
++.|.. + .+.++.++.|||+ +...+...+-.-|++..++
T Consensus 401 vKDIar--------------------------~-------------RpdLKllIsSAT~--DAekFS~fFDdapIF~iPG 439 (902)
T KOG0923|consen 401 VKDIAR--------------------------F-------------RPDLKLLISSATM--DAEKFSAFFDDAPIFRIPG 439 (902)
T ss_pred HHHHHh--------------------------h-------------CCcceEEeecccc--CHHHHHHhccCCcEEeccC
Confidence 222222 1 1556889999998 5666666555555555444
Q ss_pred CccccCccccccceeeccCC-chHHHHHHHHHh---hCCCeEEEEecChhhHHHHHHHHhhc----C--ccceeEeeccC
Q 012427 298 ETRYKLPERLESYKLICESK-LKPLYLVALLQS---LGEEKCIVFTSSVESTHRLCTLLNHF----G--ELRIKIKEYSG 367 (464)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~---~~~~~~lVf~~s~~~~~~l~~~l~~~----~--~~~~~~~~~~~ 367 (464)
.. ..+..++...++. .-..++..+++- .+.+-+|||....+..+...+.|++. | ...+-+.++|+
T Consensus 440 RR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYa 514 (902)
T KOG0923|consen 440 RR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYA 514 (902)
T ss_pred cc-----cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccc
Confidence 33 2333344333332 222333333332 25678999999999888777777652 1 23466889999
Q ss_pred cccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecC------------------CCCcchhhhhhhhhhcC
Q 012427 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARA 429 (464)
Q Consensus 368 ~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~ 429 (464)
.++.+.+..+++---.|-.++++||++++..+.|+++..||.-+. |.|..+-.||.|||||-
T Consensus 515 NLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRt 594 (902)
T KOG0923|consen 515 NLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRT 594 (902)
T ss_pred cCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCC
Confidence 999998888877666788899999999999999999999986553 34566778999999999
Q ss_pred CCCccEEEEeeCc
Q 012427 430 GQLGRCFTLLHKD 442 (464)
Q Consensus 430 g~~g~~~~~~~~~ 442 (464)
| +|+|+-+++..
T Consensus 595 g-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 595 G-PGKCFRLYTAW 606 (902)
T ss_pred C-CCceEEeechh
Confidence 6 99999999743
No 131
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.82 E-value=1e-18 Score=178.71 Aligned_cols=78 Identities=23% Similarity=0.220 Sum_probs=67.8
Q ss_pred HHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 012427 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 44 ~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
..+...++|+.|.+++..+...+.++..+++.+|||+|||++++.+++......+ .+++|.++|..+.+|..+....
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~---~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG---KKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC---CcEEEECCCHHHHHHHHHhhcc
Confidence 4455669999999999999888888888999999999999999999998877653 4799999999999999888766
Q ss_pred h
Q 012427 124 I 124 (464)
Q Consensus 124 ~ 124 (464)
+
T Consensus 86 ~ 86 (654)
T COG1199 86 I 86 (654)
T ss_pred h
Confidence 4
No 132
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.81 E-value=3e-19 Score=174.18 Aligned_cols=148 Identities=20% Similarity=0.126 Sum_probs=98.4
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc-
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV- 128 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 128 (464)
.|-.||.+.+..+= .+.++++.+||.+|||++...++-..++.. ...-+++++|+++|+.|....+.......
T Consensus 511 ~Pd~WQ~elLDsvD----r~eSavIVAPTSaGKTfisfY~iEKVLRes--D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVD----RNESAVIVAPTSAGKTFISFYAIEKVLRES--DSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhh----cccceEEEeeccCCceeccHHHHHHHHhhc--CCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 57889999866543 478999999999999998777555555554 23358999999999999887776543211
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcC--CCcCCCCccEEEEehh
Q 012427 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT--RGFTLEHLCYLVVDET 206 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~--~~~~~~~~~~iIvDE~ 206 (464)
-.....+.|.-. +.+.. ..-+|+|+|+-|+.+...+... .......+++||+||+
T Consensus 585 ~~rg~sl~g~lt-----qEYsi------------------np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEV 641 (1330)
T KOG0949|consen 585 FLRGVSLLGDLT-----QEYSI------------------NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEV 641 (1330)
T ss_pred cccchhhHhhhh-----HHhcC------------------CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechh
Confidence 112222222211 11110 0125899999999999887662 2345788999999999
Q ss_pred hHhhhHhhhhhHHHHHHhcc
Q 012427 207 DRLLREAYQAWLPTVLQLTR 226 (464)
Q Consensus 207 H~~~~~~~~~~~~~~~~~~~ 226 (464)
|.+.+..-+-..++++-+.+
T Consensus 642 H~iG~~ed~l~~Eqll~li~ 661 (1330)
T KOG0949|consen 642 HLIGNEEDGLLWEQLLLLIP 661 (1330)
T ss_pred hhccccccchHHHHHHHhcC
Confidence 98866554444444444433
No 133
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.81 E-value=5.6e-18 Score=169.17 Aligned_cols=324 Identities=19% Similarity=0.220 Sum_probs=207.7
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH-hccccC
Q 012427 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVG 129 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~ 129 (464)
.+..+...++.+ .+++.+++.|.||+|||....-.+++....++ +..++++-=|++=-|.-.++.... -+...|
T Consensus 174 a~~~r~~Il~~i----~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAI----EENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHH----HhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 444555554444 45899999999999999998777888776665 444555555876555555555432 233345
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh
Q 012427 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~ 209 (464)
-.|+.-.+..... .....+.+||.+.|++.+.. .-.+.++..||+||+|.=
T Consensus 249 ~~VGYqvrl~~~~---------------------------s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER 299 (924)
T KOG0920|consen 249 EEVGYQVRLESKR---------------------------SRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHER 299 (924)
T ss_pred CeeeEEEeeeccc---------------------------CCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEc
Confidence 4444444333211 12247999999999998886 245778999999999952
Q ss_pred hhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhccccc
Q 012427 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (464)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~ 289 (464)
.- ..+.+--++..+... .+.++.|+||||+. ...+..-+..
T Consensus 300 ~i--~~DflLi~lk~lL~~-----------------------------------~p~LkvILMSAT~d--ae~fs~YF~~ 340 (924)
T KOG0920|consen 300 SI--NTDFLLILLKDLLPR-----------------------------------NPDLKVILMSATLD--AELFSDYFGG 340 (924)
T ss_pred cC--CcccHHHHHHHHhhh-----------------------------------CCCceEEEeeeecc--hHHHHHHhCC
Confidence 10 011111111111110 15668999999984 3333322223
Q ss_pred CCeeeecCCccccCc--------------cccccc------------eeeccCCchHHHHHHHHHhh----CCCeEEEEe
Q 012427 290 HPLFLTTGETRYKLP--------------ERLESY------------KLICESKLKPLYLVALLQSL----GEEKCIVFT 339 (464)
Q Consensus 290 ~~~~~~~~~~~~~~~--------------~~~~~~------------~~~~~~~~~~~~l~~~l~~~----~~~~~lVf~ 339 (464)
-+.+...+..-+... .....+ ......+.+...+..+++.. ..+.+|||.
T Consensus 341 ~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFL 420 (924)
T KOG0920|consen 341 CPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFL 420 (924)
T ss_pred CceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEc
Confidence 333322221100000 000000 00111223444444444432 467899999
Q ss_pred cChhhHHHHHHHHhhcCc----cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC--
Q 012427 340 SSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-- 413 (464)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~-- 413 (464)
+...++..+.+.|..... ..+.+..+|+.|+.++++.+....-.|..+||++|++++.+|.|+++-.||..+..
T Consensus 421 PG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke 500 (924)
T KOG0920|consen 421 PGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKE 500 (924)
T ss_pred CCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeee
Confidence 999999999999975321 23678899999999999999999989999999999999999999999888875532
Q ss_pred ----------------CCcchhhhhhhhhhcCCCCccEEEEeeCcccccch
Q 012427 414 ----------------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 414 ----------------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 448 (464)
.|...-.||.|||||. +.|.|+.+++....+.+.
T Consensus 501 ~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~~ 550 (924)
T KOG0920|consen 501 KSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLM 550 (924)
T ss_pred eeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhcc
Confidence 2344568999999998 899999999877665544
No 134
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=4.2e-18 Score=174.02 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=69.7
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
|+|..+|+.|.+.+..+...+..++++++.+|||+|||++.+.+++......+ ...++++.+.|..-..|..+++++..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHHHHHhhh
Confidence 57888899999999999999999999999999999999999999998766432 33589999999999999999999853
No 135
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=3e-18 Score=168.78 Aligned_cols=357 Identities=16% Similarity=0.172 Sum_probs=210.0
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
.|. +|++.|.-.--. + .+.-++.+.||-|||+++.+|+.-..+.+ ..|-|+|.+..||..-++++..+.
T Consensus 75 lG~-r~ydVQliGglv-L-----h~G~IAEMkTGEGKTLvAtLpayLnAL~G----kgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGII-L-----DLGSVAEMKTGEGKTITSIAPVYLNALTG----KGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHH-H-----hcCCeeeecCCCCccHHHHHHHHHHHhcC----CceEEEecchhhhhhhHHHHHHHH
Confidence 354 677778544221 1 33458999999999999988876555543 369999999999999999999999
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHH-HhhhcC-----CCcCCCCcc
Q 012427 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-DHINAT-----RGFTLEHLC 199 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~-~~l~~~-----~~~~~~~~~ 199 (464)
..+|+.|++...+.+...+.. .-.++|+.+|..-|. +.|+.. .......+.
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~-----------------------aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~ 200 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKRE-----------------------AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLN 200 (925)
T ss_pred HHhCCceeeeCCCCChHHHHH-----------------------hccCCCeeecCcccchhhhhhcccccHHHhcCcccc
Confidence 999999999887655444322 224799999987652 333321 112256688
Q ss_pred EEEEehhhHhhhH----------------hhhhhHHHHHHhcccc-------c-------------------cccccccc
Q 012427 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSD-------N-------------------ENRFSDAS 237 (464)
Q Consensus 200 ~iIvDE~H~~~~~----------------~~~~~~~~~~~~~~~~-------~-------------------~~~~~~~~ 237 (464)
+.||||+|.++=+ .+...+..+...+... . .+.++...
T Consensus 201 faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n 280 (925)
T PRK12903 201 FCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIEN 280 (925)
T ss_pred eeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhh
Confidence 9999999975211 1222222333222110 0 00000000
Q ss_pred ccccccc----ccchhhhcc-------c---cccccCC---------------------CCC-----------------C
Q 012427 238 TFLPSAF----GSLKTIRRC-------G---VERGFKD---------------------KPY-----------------P 265 (464)
Q Consensus 238 ~~~~~~~----~~~~~~~~~-------~---~~~~~~~---------------------~~~-----------------~ 265 (464)
..+..+. .+...+.+. + +...+.. ... .
T Consensus 281 ~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~ 360 (925)
T PRK12903 281 SELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRL 360 (925)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHh
Confidence 0000000 000000000 0 0000000 000 0
Q ss_pred ceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCCeEEEEecChh
Q 012427 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE 343 (464)
Q Consensus 266 ~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~s~~ 343 (464)
..+..+||+|......++...+-.+.+.++... +........ .+......|..++.+.+.. ..++++||.|.|++
T Consensus 361 Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnk--P~~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 361 FKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNK--PVIRKDEPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred cchhhccCCCCHHHHHHHHHHhCCCEEECCCCC--CeeeeeCCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 113456777754333333332222222232211 111111111 2233445566666665543 36789999999999
Q ss_pred hHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCC-eeEEEEcccccccCCCCCCC--------eEEEecCCC
Q 012427 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEGVN--------NVVNYDKPA 414 (464)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~iLi~t~~~~~Gidip~~~--------~vi~~~~~~ 414 (464)
.++.+.+.|.+.+ ++..++++.-...+ .+++. ..|. -.|.|||+|+++|.||.--. |||....+.
T Consensus 438 ~SE~ls~~L~~~g---i~h~vLNAk~~e~E-A~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerhe 511 (925)
T PRK12903 438 DSETLHELLLEAN---IPHTVLNAKQNARE-AEIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAE 511 (925)
T ss_pred HHHHHHHHHHHCC---CCceeecccchhhH-HHHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCc
Confidence 9999999999876 66667777643333 23333 3443 47899999999999996211 788899999
Q ss_pred CcchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012427 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 415 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
|.+.--|..||+||.|.+|.+-.|++=+|.-
T Consensus 512 SrRIDnQLrGRaGRQGDpGss~f~lSLeD~L 542 (925)
T PRK12903 512 SRRIDNQLRGRSGRQGDVGESRFFISLDDQL 542 (925)
T ss_pred hHHHHHHHhcccccCCCCCcceEEEecchHH
Confidence 9988899999999999999999888766543
No 136
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=3e-17 Score=154.81 Aligned_cols=311 Identities=20% Similarity=0.261 Sum_probs=194.7
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE-cccHHHHHHHHHHHHH-hccc
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDLALQVKDVFAA-IAPA 127 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil-~P~~~L~~q~~~~~~~-~~~~ 127 (464)
.....+.+++..|.+ ++-+++.+.||+|||.. +-+++...+....-.|-. -|++.-|...++.... +...
T Consensus 356 Pvf~~R~~ll~~ir~----n~vvvivgETGSGKTTQ----l~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRE----NQVVVIVGETGSGKTTQ----LAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred chHHHHHHHHHHHhh----CcEEEEEecCCCCchhh----hHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 344556566555443 78899999999999997 344444443222223333 3888877776666543 3333
Q ss_pred cCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhh
Q 012427 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
+|-.|+......+. ......|-++|-+.|++-.... -.+.++++||+||||
T Consensus 428 lG~~VGYsIRFEdv---------------------------T~~~T~IkymTDGiLLrEsL~d--~~L~kYSviImDEAH 478 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDV---------------------------TSEDTKIKYMTDGILLRESLKD--RDLDKYSVIIMDEAH 478 (1042)
T ss_pred cccccceEEEeeec---------------------------CCCceeEEEeccchHHHHHhhh--hhhhheeEEEechhh
Confidence 34333332222111 1112357789999887643321 346789999999999
Q ss_pred HhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhccc
Q 012427 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 287 (464)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~ 287 (464)
.-.- .-+.+..++......+ ..++.|++|||+ +...+...+
T Consensus 479 ERsl--NtDilfGllk~~larR-----------------------------------rdlKliVtSATm--~a~kf~nfF 519 (1042)
T KOG0924|consen 479 ERSL--NTDILFGLLKKVLARR-----------------------------------RDLKLIVTSATM--DAQKFSNFF 519 (1042)
T ss_pred hccc--chHHHHHHHHHHHHhh-----------------------------------ccceEEEeeccc--cHHHHHHHh
Confidence 5310 0111222222111111 234789999998 555555555
Q ss_pred ccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhh-------CCCeEEEEecChhhHHHHHHHHhhc-----
Q 012427 288 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-------GEEKCIVFTSSVESTHRLCTLLNHF----- 355 (464)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~lVf~~s~~~~~~l~~~l~~~----- 355 (464)
-.-|.+...+.. ..++.++. ......++...+.+. ..+.+|||....+..+..+..+++.
T Consensus 520 gn~p~f~IpGRT-----yPV~~~~~---k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~ 591 (1042)
T KOG0924|consen 520 GNCPQFTIPGRT-----YPVEIMYT---KTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLD 591 (1042)
T ss_pred CCCceeeecCCc-----cceEEEec---cCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhh
Confidence 444444433332 11222222 222333333333322 4578999999998887777666542
Q ss_pred --CccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecC------------------CCC
Q 012427 356 --GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAY 415 (464)
Q Consensus 356 --~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~------------------~~s 415 (464)
+..++.+..+++.++..-+.+++.....|..+++|||++++..+.+|++.+||..+. |-|
T Consensus 592 ~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS 671 (1042)
T KOG0924|consen 592 SAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPIS 671 (1042)
T ss_pred cCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEech
Confidence 123688999999999988878877777888899999999999999999999997553 345
Q ss_pred cchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012427 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 416 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
...-.||.|||||.| +|.|+-++..+...
T Consensus 672 ~AnA~QRaGRAGRt~-pG~cYRlYTe~ay~ 700 (1042)
T KOG0924|consen 672 QANADQRAGRAGRTG-PGTCYRLYTEDAYK 700 (1042)
T ss_pred hccchhhccccCCCC-CcceeeehhhhHHH
Confidence 556789999999995 99999999875433
No 137
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.77 E-value=2.6e-17 Score=163.12 Aligned_cols=130 Identities=24% Similarity=0.264 Sum_probs=95.3
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
.|. .|++.|.-. .+.-.+.-++.+.||.|||+++.+|+.-..+. +..|.|+|++..||.+-++++..+.
T Consensus 73 lG~-r~ydvQlig------~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~----G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIG------GLVLNDGKIAEMKTGEGKTLVATLPAYLNALT----GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhh------hHhhcCCccccccCCCCchHHHHHHHHHHHhc----CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 464 688888543 22235667999999999999999887644443 3369999999999999999999999
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHH-HhhhcC-----CCcCCCCcc
Q 012427 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-DHINAT-----RGFTLEHLC 199 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~-~~l~~~-----~~~~~~~~~ 199 (464)
..+|+.|++..++.+...+... -.++|+.+|...+. +.|+.. .......+.
T Consensus 142 ~~LGLsvg~i~~~~~~~err~a-----------------------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~ 198 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKN-----------------------YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFN 198 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHh-----------------------cCCCCEecCCccccccchhhccCcChHHhhccccc
Confidence 9999999999888776554322 23689999986542 222211 112356688
Q ss_pred EEEEehhhHh
Q 012427 200 YLVVDETDRL 209 (464)
Q Consensus 200 ~iIvDE~H~~ 209 (464)
+.||||+|.+
T Consensus 199 faIVDEvDSi 208 (870)
T CHL00122 199 YCIIDEVDSI 208 (870)
T ss_pred eeeeecchhh
Confidence 9999999975
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.77 E-value=4e-18 Score=137.48 Aligned_cols=118 Identities=39% Similarity=0.570 Sum_probs=107.5
Q ss_pred chHHHHHHHHHhhC--CCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccc
Q 012427 318 LKPLYLVALLQSLG--EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (464)
Q Consensus 318 ~~~~~l~~~l~~~~--~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~ 395 (464)
.+...+...+.... ++++||||++...++.+++.|.+.+ ..+..+|++++..+|..+++.|..+...+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPG---IKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 56777777777653 7899999999999999999998744 789999999999999999999999999999999999
Q ss_pred cccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEE
Q 012427 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (464)
Q Consensus 396 ~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 438 (464)
++|+|+|++++||+++.+++...+.|++||++|.|+.|.++++
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887653
No 139
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.76 E-value=2.3e-17 Score=143.45 Aligned_cols=187 Identities=34% Similarity=0.543 Sum_probs=134.7
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 012427 45 NMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 45 ~~~~~~l~~~Q~~~~~~i~~~~~~~-~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
.+++..++++|.+++..+.. . +++++.+|||+|||.++..+++..+.... ..++++++|+..++.|+.+.+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC--CCcEEEEeCCHHHHHHHHHHHHH
Confidence 35678999999999888775 4 89999999999999998888888777642 34799999999999999999998
Q ss_pred hccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCC-cEEEeCchHHHHhhhcCCCcCCCCccEEE
Q 012427 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV-DILVATPGRLMDHINATRGFTLEHLCYLV 202 (464)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~IiI~T~~~l~~~l~~~~~~~~~~~~~iI 202 (464)
.............++..... .+.....+. +++++|++.+.+.+.... .....++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iI 134 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKRE---------------------QLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVI 134 (201)
T ss_pred HhccCCeEEEEEeCCcchHH---------------------HHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEE
Confidence 87654423333333332211 122233444 999999999999887754 4566788999
Q ss_pred EehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccc
Q 012427 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (464)
Q Consensus 203 vDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 282 (464)
+||+|++....+......++.... ...+.+++|||+......
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLP--------------------------------------KNVQLLLLSATPPEEIEN 176 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCC--------------------------------------ccceEEEEecCCchhHHH
Confidence 999999875445555555555442 223789999999877777
Q ss_pred hhcccccCCeeeecC
Q 012427 283 LAQLDLHHPLFLTTG 297 (464)
Q Consensus 283 ~~~~~~~~~~~~~~~ 297 (464)
...........+...
T Consensus 177 ~~~~~~~~~~~~~~~ 191 (201)
T smart00487 177 LLELFLNDPVFIDVG 191 (201)
T ss_pred HHHHhcCCCEEEeCC
Confidence 666555555544443
No 140
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=8e-18 Score=155.57 Aligned_cols=346 Identities=13% Similarity=0.063 Sum_probs=216.6
Q ss_pred HHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH
Q 012427 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (464)
Q Consensus 39 i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~ 118 (464)
+...++++--.....+|.+++.... .|++.++.-.|.+||++++.+++....... .....++..|++++++...
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~----~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~--~~s~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFAS----EGRADGGNEARQAGKGTCPTSGSRKFQTLC--HATNSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhh----hcccccccchhhcCCccCcccchhhhhhcC--cccceecchhHHHHhhccC
Confidence 4445566766788999999865544 599999999999999999999888777654 2336888899999987655
Q ss_pred HHHHHhccccC----ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCC---
Q 012427 119 DVFAAIAPAVG----LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR--- 191 (464)
Q Consensus 119 ~~~~~~~~~~~----~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~--- 191 (464)
+.+.-...... --|....|.+. .........+.+++++.|+..........
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE----------------------~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~ 406 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSE----------------------TTKSALKRIGLNTLYSHQAEAISAALAKSLCY 406 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCc----------------------hhHHHHHhcCcceeecCHHHHHHHHhhhcccc
Confidence 44432222111 11122222221 22234455778999999998766443221
Q ss_pred CcCCCCccEEEEehhhHhhhH---hhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCcee
Q 012427 192 GFTLEHLCYLVVDETDRLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (464)
Q Consensus 192 ~~~~~~~~~iIvDE~H~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
...+-...++++||+|..... .....++.+.++...-. ....++
T Consensus 407 ~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~---------------------------------~~~~~~ 453 (1034)
T KOG4150|consen 407 NVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFE---------------------------------ASINMG 453 (1034)
T ss_pred ccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHH---------------------------------hhcCcc
Confidence 122334568999999954211 11222233332221100 001224
Q ss_pred eEEeeeeeecCccchhccc-ccCCeeeecCCccccCccccccceeec---------cCCchHHHHHHHHHhh--CCCeEE
Q 012427 269 KMVLSATLTQDPNKLAQLD-LHHPLFLTTGETRYKLPERLESYKLIC---------ESKLKPLYLVALLQSL--GEEKCI 336 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~l~~~--~~~~~l 336 (464)
++-.++|+........+.+ +.....+....+. ....++.+-. ....+......++.+. .+-++|
T Consensus 454 ~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP----s~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~I 529 (1034)
T KOG4150|consen 454 VYDGDTPYKDRTRLRSELANLSELELVTIDGSP----SSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCI 529 (1034)
T ss_pred eEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC----CccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEE
Confidence 5555565544333333322 2222222222211 1111111100 1111222222333222 356899
Q ss_pred EEecChhhHHHHHHHHhhc----C-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEec
Q 012427 337 VFTSSVESTHRLCTLLNHF----G-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (464)
Q Consensus 337 Vf~~s~~~~~~l~~~l~~~----~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~ 411 (464)
.||++++.|+.+....++. + ++--.+..|.||...++|..+....-.|++.-+|+|++++-|||+.+++.|++.+
T Consensus 530 AFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~G 609 (1034)
T KOG4150|consen 530 AFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLG 609 (1034)
T ss_pred EeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEcc
Confidence 9999999998877665542 1 1112344578999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhcCCCCccEEEEeeCcccccchh
Q 012427 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAIG 449 (464)
Q Consensus 412 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 449 (464)
.|.|...+.|+.|||||.+++..++++......+.+|.
T Consensus 610 FP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 610 FPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred CchhHHHHHHHhccccccCCCceEEEEEeccchhhHhh
Confidence 99999999999999999999999998888888877774
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=2.4e-16 Score=156.09 Aligned_cols=129 Identities=27% Similarity=0.286 Sum_probs=96.6
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 47 ~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
|. .+++.|.-. .+.-.+.-++.+.||.|||+++.+|+.-..+.+ ..|.|+|++..||..-++++..+..
T Consensus 83 G~-r~ydVQliG------gl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~G----kgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 83 GM-RHFDVQLIG------GMVLHEGQIAEMKTGEGKTLVATLPSYLNALTG----KGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred CC-CcchhHHHh------hhhhcCCceeeecCCCChhHHHHHHHHHHhhcC----CCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 53 677777432 222355669999999999999998887666654 3699999999999999999999999
Q ss_pred ccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-----HHhhhc-CCCcCCCCccE
Q 012427 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-----MDHINA-TRGFTLEHLCY 200 (464)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-----~~~l~~-~~~~~~~~~~~ 200 (464)
.+|+.|++..++.+...+. ..-.++|+.+|+..| .+.+.. ........+.+
T Consensus 152 ~LGLtvg~i~~~~~~~err-----------------------~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~f 208 (939)
T PRK12902 152 FLGLSVGLIQQDMSPEERK-----------------------KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNY 208 (939)
T ss_pred HhCCeEEEECCCCChHHHH-----------------------HhcCCCeEEecCCcccccchhhhhcccccccccCccce
Confidence 9999999998776554442 223579999998766 333322 12234577899
Q ss_pred EEEehhhHh
Q 012427 201 LVVDETDRL 209 (464)
Q Consensus 201 iIvDE~H~~ 209 (464)
.||||+|.+
T Consensus 209 aIVDEvDSI 217 (939)
T PRK12902 209 CVIDEVDSI 217 (939)
T ss_pred EEEecccce
Confidence 999999975
No 142
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.74 E-value=1.3e-16 Score=159.29 Aligned_cols=368 Identities=17% Similarity=0.160 Sum_probs=213.5
Q ss_pred ccchhhHHhHHhh--hCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhh-c----cCCccEEEEcccHHHHHHHHHHHH
Q 012427 50 SLFPVQVAVWQET--IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-A----VRCLRALVVLPTRDLALQVKDVFA 122 (464)
Q Consensus 50 ~l~~~Q~~~~~~i--~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~-~----~~~~~~lil~P~~~L~~q~~~~~~ 122 (464)
.+|.||.+-+..+ ++.. +=+.|++..+|-|||+..+-.+....... + ......||+||+ .|+.-|..++.
T Consensus 975 ~LRkYQqEGVnWLaFLnky--~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKY--KLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHh--cccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 5899999886643 3311 35789999999999998764433333322 1 122348999998 57777999999
Q ss_pred HhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEE
Q 012427 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (464)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iI 202 (464)
++++. +++..+.|........+. ..++.+|+|++|+.+.+-... +.-.++.+.|
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~---------------------q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcV 1105 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRD---------------------QYKNANIIVTSYDVVRNDVDY---LIKIDWNYCV 1105 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHh---------------------hccccceEEeeHHHHHHHHHH---HHhcccceEE
Confidence 99887 566666665543333222 224569999999998754332 1123578999
Q ss_pred EehhhHhhhHhhh--hhHHHHHH---h--ccccccccccc----cccccccccccchhhhc-ccc--cc-----------
Q 012427 203 VDETDRLLREAYQ--AWLPTVLQ---L--TRSDNENRFSD----ASTFLPSAFGSLKTIRR-CGV--ER----------- 257 (464)
Q Consensus 203 vDE~H~~~~~~~~--~~~~~~~~---~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~--~~----------- 257 (464)
+||.|-+-+.... ..++++.+ + .+++.++...+ ..-.+|++++.-..+.- ++- ..
T Consensus 1106 LDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~ 1185 (1549)
T KOG0392|consen 1106 LDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQ 1185 (1549)
T ss_pred ecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHH
Confidence 9999977443221 22333322 1 12222222111 12334555544222111 000 00
Q ss_pred -------------------------ccCCCCCCceeeEEeeeeeecCccchhccc-------------------------
Q 012427 258 -------------------------GFKDKPYPRLVKMVLSATLTQDPNKLAQLD------------------------- 287 (464)
Q Consensus 258 -------------------------~~~~~~~~~~~~i~~sat~~~~~~~~~~~~------------------------- 287 (464)
-..+-|-+..|-..+.-++ .-.++...+
T Consensus 1186 EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~--lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~H 1263 (1549)
T KOG0392|consen 1186 EAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSP--LQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTH 1263 (1549)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCH--HHHHHHHHHHHHhccccccccccchhccCcchHH
Confidence 0000000000000000000 000000000
Q ss_pred -----------ccCCeeeecCCccccCccccccce------eeccCCchHHHHHHHHHhh----------------CCCe
Q 012427 288 -----------LHHPLFLTTGETRYKLPERLESYK------LICESKLKPLYLVALLQSL----------------GEEK 334 (464)
Q Consensus 288 -----------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~l~~~----------------~~~~ 334 (464)
-.+|..+... ..+.......+.. .......|..++..++... .+.+
T Consensus 1264 vFqaLqYlrKLcnHpaLvlt~-~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHR 1342 (1549)
T KOG0392|consen 1264 VFQALQYLRKLCNHPALVLTP-VHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHR 1342 (1549)
T ss_pred HHHHHHHHHHhcCCcceeeCC-CcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccce
Confidence 0011111000 0000000000000 0112345666666666543 2348
Q ss_pred EEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcC-CeeEE-EEcccccccCCCCCCCeEEEecC
Q 012427 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVL-VSSDAMTRGMDVEGVNNVVNYDK 412 (464)
Q Consensus 335 ~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~iL-i~t~~~~~Gidip~~~~vi~~~~ 412 (464)
+||||+-...+.-+.+-|-+.-...+-...+.|..++.+|.++.++|.++ ..++| ++|...+-|+|+.+++.||++.-
T Consensus 1343 iLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEH 1422 (1549)
T KOG0392|consen 1343 ILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEH 1422 (1549)
T ss_pred eEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEec
Confidence 99999999999988887766433334445789999999999999999998 57765 56678899999999999999999
Q ss_pred CCCcchhhhhhhhhhcCCCCccE--EEEeeCcccccchh
Q 012427 413 PAYIKTYIHRAGRTARAGQLGRC--FTLLHKDEKKGAIG 449 (464)
Q Consensus 413 ~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~~~~~~ 449 (464)
.|++..=+|.+-||+|.|++..+ +.++...+.++.+.
T Consensus 1423 DWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVM 1461 (1549)
T KOG0392|consen 1423 DWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVM 1461 (1549)
T ss_pred CCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHh
Confidence 99999999999999999987754 66777777776653
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.71 E-value=1.7e-17 Score=120.00 Aligned_cols=77 Identities=36% Similarity=0.627 Sum_probs=72.9
Q ss_pred HHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCC
Q 012427 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (464)
Q Consensus 351 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 430 (464)
+|++.+ +.+..+||+++..+|..+++.|.+++.++||+|+++++|+|+|.+++||++++|+|+..|.|++||++|.|
T Consensus 2 ~L~~~~---~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKG---IKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTT---SSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCC---CcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 455555 89999999999999999999999999999999999999999999999999999999999999999999986
No 144
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.70 E-value=1.6e-16 Score=156.03 Aligned_cols=354 Identities=19% Similarity=0.201 Sum_probs=214.4
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
.++.+||.+.++.+.....++-+.|+...+|.|||...+..+. .+...+.....-||+||+..|.. |..+|..|++.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLit-YLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPS- 469 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLIT-YLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPS- 469 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHH-HHHHHcccCCCeEEeccccccCC-chhhccccccc-
Confidence 5899999999999988888888999999999999998655444 44443333446899999999876 88888888663
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHH---hhhcCCCcCCCCccEEEEeh
Q 012427 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD---HINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~---~l~~~~~~~~~~~~~iIvDE 205 (464)
+....+.|...-...... +-.....+|+++||+.+.+ +|.+ -++.++||||
T Consensus 470 -v~~i~YkGtp~~R~~l~~-------------------qir~gKFnVLlTtyEyiikdk~lLsK------I~W~yMIIDE 523 (1157)
T KOG0386|consen 470 -VQKIQYKGTPQQRSGLTK-------------------QQRHGKFNVLLTTYEYIIKDKALLSK------ISWKYMIIDE 523 (1157)
T ss_pred -eeeeeeeCCHHHHhhHHH-------------------HHhcccceeeeeeHHHhcCCHHHHhc------cCCcceeecc
Confidence 444444443322111110 1122457999999998865 2222 1377999999
Q ss_pred hhHhhhHh----------hhhhHHHHHHhcccccccccccc----ccccccccccchhhhc--------ccc--------
Q 012427 206 TDRLLREA----------YQAWLPTVLQLTRSDNENRFSDA----STFLPSAFGSLKTIRR--------CGV-------- 255 (464)
Q Consensus 206 ~H~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~-------- 255 (464)
.|+|-+.. +....+.+ +++++.++..+.. +-.+|.++++...+.. +|.
T Consensus 524 GHRmKNa~~KLt~~L~t~y~~q~RLL--LTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEE 601 (1157)
T KOG0386|consen 524 GHRMKNAICKLTDTLNTHYRAQRRLL--LTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEE 601 (1157)
T ss_pred cccccchhhHHHHHhhccccchhhhh--hcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchH
Confidence 99984321 11111111 2333333333322 2333444433322111 110
Q ss_pred ----------------cc----ccCCCCCCcee---eEEeeeeeecCccc--------------------------hhcc
Q 012427 256 ----------------ER----GFKDKPYPRLV---KMVLSATLTQDPNK--------------------------LAQL 286 (464)
Q Consensus 256 ----------------~~----~~~~~~~~~~~---~i~~sat~~~~~~~--------------------------~~~~ 286 (464)
.+ ..+...-.+.. ..-+||--...... ....
T Consensus 602 tlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRK 681 (1157)
T KOG0386|consen 602 TLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRK 681 (1157)
T ss_pred HHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHH
Confidence 00 00000000000 00011000000000 0000
Q ss_pred cccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEee
Q 012427 287 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 364 (464)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~ 364 (464)
.-++|..+............. ........|++.+..++.+. .+.++|.||.-.....-+..+|.-.+ ++...
T Consensus 682 iCNHP~lf~~ve~~~~~~~~~---~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~---~kYlR 755 (1157)
T KOG0386|consen 682 LCNHPYLFANVENSYTLHYDI---KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIRE---YKYLR 755 (1157)
T ss_pred hcCCchhhhhhccccccccCh---hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhh---hheee
Confidence 001111110000000000000 12234556777777777654 57899999998888888888887655 88999
Q ss_pred ccCcccHHHHHHHHHHHhcCC---eeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEe
Q 012427 365 YSGLQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439 (464)
Q Consensus 365 ~~~~~~~~~r~~~~~~f~~~~---~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 439 (464)
+.|.....+|.+.++.|..-+ .-+|..|.+.+-|+|+.-++.||+++..|++....|+--|++|.|+...+-++.
T Consensus 756 LDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 756 LDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred ecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 999999999999999998644 457899999999999999999999999999999999999999999877765544
No 145
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=1.6e-15 Score=151.94 Aligned_cols=332 Identities=17% Similarity=0.202 Sum_probs=209.9
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHH-HHHHhcccc
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD-VFAAIAPAV 128 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~-~~~~~~~~~ 128 (464)
..++.|..++..+++ .+.++++.+|+|+|||.++-++++. +....++++++|.-+++..++. +-+++....
T Consensus 1143 ~~n~iqtqVf~~~y~---~nd~v~vga~~gsgkt~~ae~a~l~-----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYN---TNDNVLVGAPNGSGKTACAELALLR-----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred ccCCceEEEEeeeec---ccceEEEecCCCCchhHHHHHHhcC-----CccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 348889998877776 6688999999999999998887775 2234589999999999885544 445566667
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012427 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
|..+..+.|....... +....+|+|+||+++-.+ . ..+..++.|+||.|.
T Consensus 1215 G~~~~~l~ge~s~~lk------------------------l~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~ 1264 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLDLK------------------------LLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHL 1264 (1674)
T ss_pred CceEEecCCccccchH------------------------HhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhh
Confidence 8999999998876654 234459999999998655 2 356788999999997
Q ss_pred hhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccc
Q 012427 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288 (464)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~ 288 (464)
+. ...+...+-+.. ++. +......+.+.+.+|..+.+...- .+.
T Consensus 1265 ig-g~~g~v~evi~S-~r~-------------------------------ia~q~~k~ir~v~ls~~lana~d~---ig~ 1308 (1674)
T KOG0951|consen 1265 IG-GVYGAVYEVICS-MRY-------------------------------IASQLEKKIRVVALSSSLANARDL---IGA 1308 (1674)
T ss_pred hc-ccCCceEEEEee-HHH-------------------------------HHHHHHhheeEEEeehhhccchhh---ccc
Confidence 64 222111100000 000 000011344677777766443333 333
Q ss_pred cCCeeeecCCccccCccccccceeeccCCc--hHH----HHHHHHHh-hCCCeEEEEecChhhHHHHHHHHhhcCc----
Q 012427 289 HHPLFLTTGETRYKLPERLESYKLICESKL--KPL----YLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGE---- 357 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~l~~~l~~-~~~~~~lVf~~s~~~~~~l~~~l~~~~~---- 357 (464)
...-+++........|-.++.......... ... ...++.+. ..+++++||++++++|..++.-|-.+..
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~ 1388 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP 1388 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH
Confidence 333344433333333333332222111111 111 11111122 1456899999999999877655432110
Q ss_pred ---------------cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecC----------
Q 012427 358 ---------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---------- 412 (464)
Q Consensus 358 ---------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~---------- 412 (464)
...+..+-|-+++..+..-+...|+.|...++|.... -.|+-.. .+.||..+.
T Consensus 1389 ~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~ 1466 (1674)
T KOG0951|consen 1389 DYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSY 1466 (1674)
T ss_pred HHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc-ceEEEEecceeeccccccc
Confidence 1122233388999999888999999999999988876 6677664 345555442
Q ss_pred -CCCcchhhhhhhhhhcCCCCccEEEEeeCcccccchhhccccccccccc
Q 012427 413 -PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAIGRSLFHQSRVLGV 461 (464)
Q Consensus 413 -~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (464)
+-+...+.|++|+|.| .|+|+++. ....+++|+..+++..|++|-
T Consensus 1467 ~~y~i~~ll~m~G~a~~---~~k~vi~~-~~~~k~yykkfl~e~lPves~ 1512 (1674)
T KOG0951|consen 1467 EDYPIAELLQMVGLASG---AGKCVIMC-HTPKKEYYKKFLYEPLPVESH 1512 (1674)
T ss_pred ccCchhHHHHHhhhhcC---CccEEEEe-cCchHHHHHHhccCcCchHHH
Confidence 3446678999999999 45777555 666778888889999998873
No 146
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=4.5e-15 Score=135.17 Aligned_cols=331 Identities=20% Similarity=0.260 Sum_probs=192.5
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE
Q 012427 28 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (464)
Q Consensus 28 ~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil 107 (464)
||..+| .++...+.+++..--..+.++.+- ++.+.+++-+++.|.||+|||...--+.++...... .-+..-
T Consensus 26 pf~~~p-~s~rY~~ilk~R~~LPvw~~k~~F----~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~---~~v~CT 97 (699)
T KOG0925|consen 26 PFNGKP-YSQRYYDILKKRRELPVWEQKEEF----LKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL---TGVACT 97 (699)
T ss_pred CCCCCc-CcHHHHHHHHHHhcCchHHhHHHH----HHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc---cceeec
Confidence 444444 778888888875433445444443 334446889999999999999987666666655442 123333
Q ss_pred cccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhh
Q 012427 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (464)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l 187 (464)
-|.+.-+.+.+..... .+++..+.-.|..-..+. +.++..+ .-.+|-++|++-.
T Consensus 98 Qprrvaamsva~RVad---EMDv~lG~EVGysIrfEd--------------C~~~~T~---------Lky~tDgmLlrEa 151 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVAD---EMDVTLGEEVGYSIRFED--------------CTSPNTL---------LKYCTDGMLLREA 151 (699)
T ss_pred CchHHHHHHHHHHHHH---Hhccccchhccccccccc--------------cCChhHH---------HHHhcchHHHHHH
Confidence 4777777666655443 223333222222211110 0001111 1135555555533
Q ss_pred hcCCCcCCCCccEEEEehhhHh--hhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCC
Q 012427 188 NATRGFTLEHLCYLVVDETDRL--LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (464)
Q Consensus 188 ~~~~~~~~~~~~~iIvDE~H~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
... -.++.+++||+||||.- ..+.....++...... +
T Consensus 152 ms~--p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r---------------------------------------p 190 (699)
T KOG0925|consen 152 MSD--PLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR---------------------------------------P 190 (699)
T ss_pred hhC--cccccccEEEechhhhhhHHHHHHHHHHHHHHhhC---------------------------------------C
Confidence 332 33678999999999952 2222333333333211 4
Q ss_pred ceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHH-HHHHHHHh---hCCCeEEEEecC
Q 012427 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL-YLVALLQS---LGEEKCIVFTSS 341 (464)
Q Consensus 266 ~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~~~lVf~~s 341 (464)
.++.|++|+|. ...++..-+...|++...+. ..++.++.......-.+ ++..+++- ..++-+|||...
T Consensus 191 dLk~vvmSatl--~a~Kfq~yf~n~Pll~vpg~------~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtg 262 (699)
T KOG0925|consen 191 DLKLVVMSATL--DAEKFQRYFGNAPLLAVPGT------HPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTG 262 (699)
T ss_pred CceEEEeeccc--chHHHHHHhCCCCeeecCCC------CceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 55899999997 34444444444444443331 22222333323222222 22233332 246789999999
Q ss_pred hhhHHHHHHHHhhcC------ccceeEeeccCcccHHHHHHHHHHHhc-----CCeeEEEEcccccccCCCCCCCeEEEe
Q 012427 342 VESTHRLCTLLNHFG------ELRIKIKEYSGLQRQSVRSKTLKAFRE-----GKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (464)
Q Consensus 342 ~~~~~~l~~~l~~~~------~~~~~~~~~~~~~~~~~r~~~~~~f~~-----~~~~iLi~t~~~~~Gidip~~~~vi~~ 410 (464)
.++.+..|+.+.... ..+.++..+|. .++..+++-... -..+++|+|++++..+.++++.+||.-
T Consensus 263 eeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP----~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDp 338 (699)
T KOG0925|consen 263 EEEIEDACRKISREVDNLGPQVGPLKVVPLYP----AQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDP 338 (699)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCceEEecCc----hhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecC
Confidence 999999999887421 23467777873 222333222211 136799999999999999998888865
Q ss_pred cC------------------CCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012427 411 DK------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 411 ~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
+. |-|..+-.||.||+||. +.|+|+.++.+.-...
T Consensus 339 Gf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 339 GFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAFEK 391 (699)
T ss_pred chhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhhhh
Confidence 43 45666778999999998 7999999997664443
No 147
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.68 E-value=1.8e-15 Score=150.18 Aligned_cols=131 Identities=21% Similarity=0.254 Sum_probs=112.8
Q ss_pred CCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCC--eeEEEE
Q 012427 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVS 391 (464)
Q Consensus 316 ~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~iLi~ 391 (464)
+..|+..|..+|++. .+.++|||+.=..+...+...|..++ +....+.|....++|.+++++|..+. ..+|++
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHg---ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILS 1334 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHG---YLYVRLDGNTSVEQRQALMERFNADRRIFCFILS 1334 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcc---eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEe
Confidence 445677777777765 57799999999999999999998877 88899999999999999999999875 457889
Q ss_pred cccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCC--ccEEEEeeCcccccchh
Q 012427 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEKKGAIG 449 (464)
Q Consensus 392 t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~~~~~ 449 (464)
|...+.|||+.+++.||+|+..|++..=.|.--|.+|.|+. =..+.+++....++-+.
T Consensus 1335 TrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniL 1394 (1958)
T KOG0391|consen 1335 TRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENIL 1394 (1958)
T ss_pred ccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHH
Confidence 99999999999999999999999999999999999999854 45677788887776554
No 148
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.68 E-value=1.2e-16 Score=136.94 Aligned_cols=147 Identities=22% Similarity=0.211 Sum_probs=91.9
Q ss_pred ccchhhHHhHHhhhCCCCC---CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 50 SLFPVQVAVWQETIGPGLF---ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~---~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
+|+++|.+++..+.+.+.. ..++++.+|||+|||.+++..+.+... +++|++|+..|+.|+.+.+..+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 6899999999998865544 488999999999999997754444333 699999999999999999976654
Q ss_pred ccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCC----------CcCCC
Q 012427 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR----------GFTLE 196 (464)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~----------~~~~~ 196 (464)
... .............. ....................+++++|++++........ .....
T Consensus 76 ~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 76 EKY-NFFEKSIKPAYDSK---------EFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp TSE-EEEE--GGGCCE-S---------EEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred hhh-hhcccccccccccc---------cccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 321 11110000000000 00000000111122234557899999999987654311 12345
Q ss_pred CccEEEEehhhHhhhHh
Q 012427 197 HLCYLVVDETDRLLREA 213 (464)
Q Consensus 197 ~~~~iIvDE~H~~~~~~ 213 (464)
.+++||+||||++....
T Consensus 146 ~~~~vI~DEaH~~~~~~ 162 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDS 162 (184)
T ss_dssp SESEEEEETGGCTHHHH
T ss_pred cCCEEEEehhhhcCCHH
Confidence 67899999999987766
No 149
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.68 E-value=3.9e-16 Score=144.30 Aligned_cols=269 Identities=21% Similarity=0.257 Sum_probs=173.3
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhh
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 149 (464)
+-++-+|||.||||.- +++++...+ +.++--|.+-||.+.++.+... |++|..+.|........
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~ak----sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~---- 255 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKSAK----SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLD---- 255 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhhhc----cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCC----
Confidence 3466699999999987 666666543 5799999999999999888876 88999888875432220
Q ss_pred ccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhh-hhHHHHHHhcccc
Q 012427 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ-AWLPTVLQLTRSD 228 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~-~~~~~~~~~~~~~ 228 (464)
-...++.+-+|.++.. . -..+++.|+||.++|.+.+.+ .|.+.+++..+..
T Consensus 256 -------------------~~~~a~hvScTVEM~s--------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE 307 (700)
T KOG0953|consen 256 -------------------NGNPAQHVSCTVEMVS--------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE 307 (700)
T ss_pred -------------------CCCcccceEEEEEEee--------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhh
Confidence 0122567777766541 1 234789999999988776654 5566666554421
Q ss_pred ccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccc
Q 012427 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308 (464)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (464)
|-+.+.+. ...+... +....++. -.+.
T Consensus 308 -----------------------------------------iHLCGeps--vldlV~~-----i~k~TGd~-----vev~ 334 (700)
T KOG0953|consen 308 -----------------------------------------IHLCGEPS--VLDLVRK-----ILKMTGDD-----VEVR 334 (700)
T ss_pred -----------------------------------------hhccCCch--HHHHHHH-----HHhhcCCe-----eEEE
Confidence 11111110 0000000 00000000 0011
Q ss_pred cceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhc--CCe
Q 012427 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKI 386 (464)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~ 386 (464)
.|....+-. -.+.+..-+.....+-++|-+ |++....+...+.+.+ +.++++++|.++++.|.+....|.+ +++
T Consensus 335 ~YeRl~pL~-v~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g--~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~ 410 (700)
T KOG0953|consen 335 EYERLSPLV-VEETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAG--NHKCAVIYGSLPPETRLAQAALFNDPSNEC 410 (700)
T ss_pred eecccCcce-ehhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhc--CcceEEEecCCCCchhHHHHHHhCCCCCcc
Confidence 111111111 111233334444555555544 5677888888888766 2568999999999999999999986 889
Q ss_pred eEEEEcccccccCCCCCCCeEEEecCC---------CCcchhhhhhhhhhcCC---CCccEEEEee
Q 012427 387 QVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGRTARAG---QLGRCFTLLH 440 (464)
Q Consensus 387 ~iLi~t~~~~~Gidip~~~~vi~~~~~---------~s~~~~~Q~~GR~~R~g---~~g~~~~~~~ 440 (464)
+|||||++.+.|+|+ +++-||+++.. ....+..|..|||||.| ..|.+.++..
T Consensus 411 dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 411 DVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred ceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 999999999999999 68899998754 34667899999999986 4666666653
No 150
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.66 E-value=6.6e-15 Score=139.65 Aligned_cols=130 Identities=17% Similarity=0.239 Sum_probs=110.1
Q ss_pred CCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCC-eeEEEEc
Q 012427 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSS 392 (464)
Q Consensus 316 ~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~iLi~t 392 (464)
...|+..+.+++.+. .+.++|+|+.-.++...+.+||...+ +....+.|.....+|.++++.|...+ +-+|++|
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~---Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLST 1102 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRG---YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLST 1102 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhc---cceEEecCcchhhHHHHHHhhccCCceEEEEEec
Confidence 456777788888765 46699999999999999999998776 88899999999999999999999765 4568999
Q ss_pred ccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCcc--EEEEeeCcccccch
Q 012427 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR--CFTLLHKDEKKGAI 448 (464)
Q Consensus 393 ~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~--~~~~~~~~~~~~~~ 448 (464)
.+.+-|||+..++.||+|+..|++..=.|.+.||+|-|+... ++.++...+.++.+
T Consensus 1103 RAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~ 1160 (1185)
T KOG0388|consen 1103 RAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKV 1160 (1185)
T ss_pred ccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHH
Confidence 999999999999999999999999999999999999997654 45556666555544
No 151
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.64 E-value=1.2e-14 Score=118.87 Aligned_cols=122 Identities=39% Similarity=0.647 Sum_probs=92.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhh
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 149 (464)
+++++.+|||+|||.+++..+....... ...+++|++|+..++.|+.+.+...... +..+....+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~--~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE---- 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc--cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH----
Confidence 4689999999999999888777766652 3458999999999999999999888764 56777777765443321
Q ss_pred ccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhh
Q 012427 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~ 216 (464)
.....+.+|+++|++.+.+...... .....++++|+||+|.+....+..
T Consensus 74 -----------------~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 74 -----------------KLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred -----------------HHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHH
Confidence 1223567999999999988776543 335578899999999986655443
No 152
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=1.5e-14 Score=145.13 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=96.7
Q ss_pred ccCCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCC-eeEEE
Q 012427 314 CESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLV 390 (464)
Q Consensus 314 ~~~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~iLi 390 (464)
.....|..++.+.+... .++++||-+.|++..+.+.+.|...+ ++..++++.....|- +++.. .|. -.|-|
T Consensus 608 ~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~g---I~H~VLNAK~h~~EA-eIVA~--AG~~GaVTI 681 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRK---IPHNVLNAKLHQKEA-EIVAE--AGQPGTVTI 681 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcC---CcHHHhhccchhhHH-HHHHh--cCCCCcEEE
Confidence 34456666666666543 68899999999999999999999876 565566666444333 33332 233 36899
Q ss_pred EcccccccCCCC-C--C-----CeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012427 391 SSDAMTRGMDVE-G--V-----NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 391 ~t~~~~~Gidip-~--~-----~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
||+|+++|.||. + + =+||....+.|.+.--|..||+||.|.+|.+-.|++=+|.-.
T Consensus 682 ATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 682 ATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred eccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 999999999996 1 1 178888899999999999999999999999998887665443
No 153
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.61 E-value=2.2e-14 Score=130.95 Aligned_cols=129 Identities=22% Similarity=0.166 Sum_probs=105.2
Q ss_pred chHHHHHHHHHhh----CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcC-CeeE-EEE
Q 012427 318 LKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVS 391 (464)
Q Consensus 318 ~~~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~i-Li~ 391 (464)
-|+++|.+.+... ..-|.|||.+.......+.-.|.+.| +.++-+.|+|+...|++.++.|.++ ++.| |++
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaG---fscVkL~GsMs~~ardatik~F~nd~~c~vfLvS 696 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAG---FSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVS 696 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccC---ceEEEeccCCChHHHHHHHHHhccCCCeEEEEEE
Confidence 3555565555443 23489999999999999999998877 9999999999999999999999976 4665 556
Q ss_pred cccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCc--cEEEEeeCcccccchh
Q 012427 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEKKGAIG 449 (464)
Q Consensus 392 t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~~~~~ 449 (464)
-.+.+..+|+..+++|+++++-|++..-+|...|++|.|+.. .++.|+-.+..+..+.
T Consensus 697 LkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIi 756 (791)
T KOG1002|consen 697 LKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKII 756 (791)
T ss_pred eccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHH
Confidence 677788899999999999999999999999999999999644 6677777766665553
No 154
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.57 E-value=6.1e-15 Score=108.01 Aligned_cols=81 Identities=43% Similarity=0.709 Sum_probs=74.9
Q ss_pred HHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhh
Q 012427 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (464)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~ 426 (464)
.+++.|+..+ +.+..+||+++..+|.++++.|.+++..+|++|+++++|+|+|.+++||+++++++...|.|++||+
T Consensus 2 ~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELG---IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCC---CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4566676654 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 012427 427 ARAG 430 (464)
Q Consensus 427 ~R~g 430 (464)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9975
No 155
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=2.4e-13 Score=129.31 Aligned_cols=115 Identities=19% Similarity=0.218 Sum_probs=92.0
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhc--CCeeE-EEEcccccccCCCCCCCeE
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQV-LVSSDAMTRGMDVEGVNNV 407 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~i-Li~t~~~~~Gidip~~~~v 407 (464)
...+++|...=......+...+++.+ .....+||.....+|.++++.|.. |..++ |+.-.+.+.|+|+-+.+|+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g---~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHl 821 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGG---HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHL 821 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCC---eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceE
Confidence 56677776666666677777777766 888899999999999999999984 33454 5555677899999999999
Q ss_pred EEecCCCCcchhhhhhhhhhcCCCCccEE--EEeeCcccccch
Q 012427 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCF--TLLHKDEKKGAI 448 (464)
Q Consensus 408 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~--~~~~~~~~~~~~ 448 (464)
|+++..|++.--.|.+-|+-|.|+...++ -|++.++.+.-+
T Consensus 822 ilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV 864 (901)
T KOG4439|consen 822 ILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRV 864 (901)
T ss_pred EEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHH
Confidence 99999999999999999999999877654 456666655544
No 156
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.48 E-value=1.6e-13 Score=124.60 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=66.5
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc--CCccEEEEcccHHHHHHHHHHHHH
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
|+|. +|+.|.+++..+...+..+.++++.+|||+|||++++.+++..+...+. ...+++|.++|..+.+|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5674 6999999999999989899999999999999999999999877665432 124799999999999998888876
Q ss_pred hc
Q 012427 124 IA 125 (464)
Q Consensus 124 ~~ 125 (464)
..
T Consensus 84 ~~ 85 (289)
T smart00488 84 LM 85 (289)
T ss_pred cc
Confidence 53
No 157
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.48 E-value=1.6e-13 Score=124.60 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=66.5
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc--CCccEEEEcccHHHHHHHHHHHHH
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
|+|. +|+.|.+++..+...+..+.++++.+|||+|||++++.+++..+...+. ...+++|.++|..+.+|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5674 6999999999999989899999999999999999999999877665432 124799999999999998888876
Q ss_pred hc
Q 012427 124 IA 125 (464)
Q Consensus 124 ~~ 125 (464)
..
T Consensus 84 ~~ 85 (289)
T smart00489 84 LM 85 (289)
T ss_pred cc
Confidence 53
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.47 E-value=5.8e-12 Score=127.45 Aligned_cols=339 Identities=19% Similarity=0.166 Sum_probs=185.6
Q ss_pred ccchhhHHhHHhhhC----CCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 50 SLFPVQVAVWQETIG----PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~----~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
.-+.||-+|++.+.. ....|-=++--|.||+|||++=. -++..+... ..+.|..|..-.+.|--|.-+++++-.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd~-~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRDD-KQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCCC-CCCceEEEEccccceeccchHHHHHhc
Confidence 456789888776543 11122224557899999999733 345444443 355588888888899999999999877
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccc--ccc----------------ccCC----chhHHHhhhc--------CCcE
Q 012427 126 PAVGLSVGLAVGQSSIADEISELIKRPKL--EAG----------------ICYD----PEDVLQELQS--------AVDI 175 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~--~~~----------------~~~~----~~~~~~~~~~--------~~~I 175 (464)
.-.+-...++.|+....+--......... +.+ +.+. ...+...+.+ ...|
T Consensus 486 ~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 486 NLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred CCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 66667888888887654332211110000 000 1111 1112222222 2579
Q ss_pred EEeCchHHHHhhhcC--CCcCCC----CccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchh
Q 012427 176 LVATPGRLMDHINAT--RGFTLE----HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (464)
Q Consensus 176 iI~T~~~l~~~l~~~--~~~~~~----~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (464)
+|+|++.++...... +...+. .-+.+|+||+|.+ +......+..++.....
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~---------------------- 622 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGL---------------------- 622 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHH----------------------
Confidence 999999998765221 111111 1358999999965 33333444444442221
Q ss_pred hhccccccccCCCCCCceeeEEeeeeeecCccchhcc-c----------cc---CCe-eeecCCccc-------c-----
Q 012427 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL-D----------LH---HPL-FLTTGETRY-------K----- 302 (464)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~-~----------~~---~~~-~~~~~~~~~-------~----- 302 (464)
...+++++|||+++........ + .. .+. +.-.-..++ .
T Consensus 623 ---------------lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F 687 (1110)
T TIGR02562 623 ---------------LGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEF 687 (1110)
T ss_pred ---------------cCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHH
Confidence 1226788888887653221110 0 00 010 000000000 0
Q ss_pred -----------------CccccccceeeccCCc-----hHHHHHHHH--------Hhh----C-CCe----EEEEecChh
Q 012427 303 -----------------LPERLESYKLICESKL-----KPLYLVALL--------QSL----G-EEK----CIVFTSSVE 343 (464)
Q Consensus 303 -----------------~~~~~~~~~~~~~~~~-----~~~~l~~~l--------~~~----~-~~~----~lVf~~s~~ 343 (464)
.+....-....++... ........+ +.+ + .+| +||-..+++
T Consensus 688 ~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~ 767 (1110)
T TIGR02562 688 IQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANID 767 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCch
Confidence 0000000011111111 111111111 111 1 222 678888899
Q ss_pred hHHHHHHHHhhcCc---cceeEeeccCcccHHHHHHHHHHH----------------------hc----CCeeEEEEccc
Q 012427 344 STHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAF----------------------RE----GKIQVLVSSDA 394 (464)
Q Consensus 344 ~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~r~~~~~~f----------------------~~----~~~~iLi~t~~ 394 (464)
.+-.++..|..... ..+.+.+||+...-..|..+.+.. ++ +...|+|+|++
T Consensus 768 p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv 847 (1110)
T TIGR02562 768 PLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPV 847 (1110)
T ss_pred HHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeee
Confidence 98888888876431 234577899998766666655442 11 35679999999
Q ss_pred ccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCC
Q 012427 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (464)
Q Consensus 395 ~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~ 431 (464)
.+.|+|+ +.+.+|. .+.++.+++|++||+.|.+.
T Consensus 848 ~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 848 EEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred EEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 9999998 3555544 46668999999999999864
No 159
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.47 E-value=2.9e-12 Score=125.61 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCc-------------------cceeEeeccCcccHHHHHHH
Q 012427 319 KPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIKIKEYSGLQRQSVRSKT 377 (464)
Q Consensus 319 ~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~-------------------~~~~~~~~~~~~~~~~r~~~ 377 (464)
|...|.++|+.. .+.+.|||.+|......+..+|.-... .+.....+.|.....+|+.+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 333566666543 578999999999999988888864211 12346678899999999999
Q ss_pred HHHHhcCC----eeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEE--EeeCcccccc
Q 012427 378 LKAFREGK----IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT--LLHKDEKKGA 447 (464)
Q Consensus 378 ~~~f~~~~----~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~~~~~ 447 (464)
.+.|..-. .-+||+|.+.+-|+|+-.++-|||++..|++.-=.|.+=|+.|.|+..-|++ |+...+-++.
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeK 1282 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEK 1282 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHH
Confidence 99998532 2379999999999999999999999999999999999999999998776654 4554444443
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.47 E-value=3.2e-11 Score=113.05 Aligned_cols=254 Identities=18% Similarity=0.199 Sum_probs=173.1
Q ss_pred cCCcEEEeCchHHHHhhhcC----CC-cCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccc-ccccccccccccccc
Q 012427 171 SAVDILVATPGRLMDHINAT----RG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN-ENRFSDASTFLPSAF 244 (464)
Q Consensus 171 ~~~~IiI~T~~~l~~~l~~~----~~-~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 244 (464)
.++||||++|=-|...+... .. -.++++.++|+|.||.+.-++|.. +..++..+...+ .....+.+...+.++
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~~~~~~DfsRVR~w~L 208 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPKKSHDTDFSRVRPWYL 208 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCCCCCCCCHHHHHHHHH
Confidence 34789999998887766641 11 238899999999999887777664 444555444433 333466677777777
Q ss_pred ccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccC---CeeeecCCc----cccCccccccceeecc--
Q 012427 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH---PLFLTTGET----RYKLPERLESYKLICE-- 315 (464)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~-- 315 (464)
+..+...+ |.+++|+...+....+......+ .+.+..... .......+.+.+...+
T Consensus 209 dg~a~~~R---------------Qtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 209 DGQAKYYR---------------QTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred cCcchhee---------------EeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 77766655 99999999877766654432221 111111111 1122222333332211
Q ss_pred -----CCchHHHHHH-HH---H-hhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCC
Q 012427 316 -----SKLKPLYLVA-LL---Q-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385 (464)
Q Consensus 316 -----~~~~~~~l~~-~l---~-~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 385 (464)
.+.+.....+ ++ . ....+.+|||++|.-+--.+.++|++.+ +....+|-..+..+.......|..|+
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~---~sF~~i~EYts~~~isRAR~~F~~G~ 350 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN---ISFVQISEYTSNSDISRARSQFFHGR 350 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC---CeEEEecccCCHHHHHHHHHHHHcCC
Confidence 1222222211 22 2 3345689999999999999999999665 88888999999999999999999999
Q ss_pred eeEEEEcccc--cccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCC------CccEEEEeeCcc
Q 012427 386 IQVLVSSDAM--TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ------LGRCFTLLHKDE 443 (464)
Q Consensus 386 ~~iLi~t~~~--~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~------~g~~~~~~~~~~ 443 (464)
.+||+.|.-+ -+-..+.++.+||+|++|..+.-|...++..+.... ...|.+++++=|
T Consensus 351 ~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D 416 (442)
T PF06862_consen 351 KPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYD 416 (442)
T ss_pred ceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhH
Confidence 9999999875 356788899999999999999988888866555432 567888886544
No 161
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.45 E-value=4.5e-12 Score=126.62 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=79.4
Q ss_pred EEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccc
Q 012427 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (464)
Q Consensus 73 li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 152 (464)
+..+.+|+|||-+|+-.+.+.+..+ ..+|||+|.+.|..|+.+.++..+. +..+..++++.+..++.
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~G----k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~------- 230 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAG----RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRY------- 230 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcC----CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHH-------
Confidence 3444469999999988777666653 3699999999999999999998764 25688899988776664
Q ss_pred cccccccCCchhHHHhhhcC-CcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh
Q 012427 153 KLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (464)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~-~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~ 209 (464)
+.|..+..+ ..|+|+|...+ ...+.++++|||||-|.-
T Consensus 231 -----------~~w~~~~~G~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd~ 269 (665)
T PRK14873 231 -----------RRWLAVLRGQARVVVGTRSAV--------FAPVEDLGLVAIWDDGDD 269 (665)
T ss_pred -----------HHHHHHhCCCCcEEEEcceeE--------EeccCCCCEEEEEcCCch
Confidence 344445555 79999994332 245889999999999943
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.43 E-value=3.4e-11 Score=118.83 Aligned_cols=134 Identities=16% Similarity=0.267 Sum_probs=89.9
Q ss_pred HHHHHHHHhh-CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccC
Q 012427 321 LYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399 (464)
Q Consensus 321 ~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gi 399 (464)
.....++... .+.++-||+++...++.+++..+... .++..++++.+..+ + +. =++.++++-|+.+..|+
T Consensus 270 tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~---~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~ 340 (824)
T PF02399_consen 270 TFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFT---KKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGL 340 (824)
T ss_pred hHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcC---CeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEe
Confidence 3445555544 45677789999999998888888765 78888888776652 2 22 25689999999999999
Q ss_pred CCCC--CCeEEEecCC----CCcchhhhhhhhhhcCCCCccEEEEeeCccccc--chhhccccccccccccCC
Q 012427 400 DVEG--VNNVVNYDKP----AYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG--AIGRSLFHQSRVLGVGWS 464 (464)
Q Consensus 400 dip~--~~~vi~~~~~----~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 464 (464)
++-. .+-|+.|-.| .++.+..|++||+-.- .+.+.+++++...... .+-.++.+..--..-||+
T Consensus 341 Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~~~~~~~~~tpmlLNh~i~~~~~Wp 412 (824)
T PF02399_consen 341 SFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDASGARSEPIFTPMLLNHVIPSCGGWP 412 (824)
T ss_pred ccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecccccCCCCCCcchhcccccCCCCCC
Confidence 9964 3446555333 3355689999998665 5677888887664433 333444443333333775
No 163
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.43 E-value=1.2e-11 Score=129.24 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=77.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHh
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (464)
++..++|-.+|||||++.+..+-..+.. ...++++|||-+++|-.|+.+++..+........ ...+ .
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s-~------ 339 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAES-T------ 339 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccC-H------
Confidence 4669999999999999966654444333 5778999999999999999999999865432111 1111 1
Q ss_pred hccccccccccCCchhHHHhhhcC-CcEEEeCchHHHHhhhcCCCc-CCCCccEEEEehhhHh
Q 012427 149 IKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRL 209 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~IiI~T~~~l~~~l~~~~~~-~~~~~~~iIvDE~H~~ 209 (464)
..+.+.+... ..|+|+|.++|.......... .-.+--++|+||||+-
T Consensus 340 --------------~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 340 --------------SELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred --------------HHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 2222333333 489999999998776543111 1122338999999975
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.39 E-value=7.1e-12 Score=133.80 Aligned_cols=128 Identities=21% Similarity=0.253 Sum_probs=106.9
Q ss_pred chHHHHHHHH-Hh--hCCC--eEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcC--CeeEEE
Q 012427 318 LKPLYLVALL-QS--LGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLV 390 (464)
Q Consensus 318 ~~~~~l~~~l-~~--~~~~--~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~iLi 390 (464)
.+...+.+++ .. ..+. ++++|++.......+..++...+ +....++|.++..+|...++.|.++ ..-+++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~---~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ll 768 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALG---IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLL 768 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcC---CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEE
Confidence 5666666666 22 2455 89999999999999999998876 7888999999999999999999986 445677
Q ss_pred EcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccE--EEEeeCcccccch
Q 012427 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKDEKKGAI 448 (464)
Q Consensus 391 ~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~~~~~ 448 (464)
.+.+.+.|+|+..+++||++++.+++....|...|+.|.|+...+ +.++..+..++.+
T Consensus 769 s~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i 828 (866)
T COG0553 769 SLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKI 828 (866)
T ss_pred EecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHH
Confidence 788999999999999999999999999999999999999977655 5566666655544
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.35 E-value=9.7e-12 Score=96.83 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHH
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 147 (464)
+|+--++...+|+|||.-.+.-++..... ++.++|+|.||+.++..+.+.++.. ++.+..-....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~-------- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR-------- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS---------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec--------
Confidence 35567889999999998755544443332 3458999999999999888888754 22222111110
Q ss_pred hhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh
Q 012427 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (464)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~ 209 (464)
....+..|-++|+..+.+.+... ....++++||+||||..
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~p--~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLNP--CRLKNYDVIIMDECHFT 107 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHTS--SCTTS-SEEEECTTT--
T ss_pred --------------------cccCCCcccccccHHHHHHhcCc--ccccCccEEEEeccccC
Confidence 01234478899999988877652 44678999999999954
No 166
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.27 E-value=1.4e-11 Score=114.34 Aligned_cols=130 Identities=21% Similarity=0.168 Sum_probs=79.9
Q ss_pred hhHHhHHhhhCCC---------CCCCCEEEECCCCchhHHHhHHHHHHHHHhhccC--CccEEEEcccHHHHHHHHHHHH
Q 012427 54 VQVAVWQETIGPG---------LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPTRDLALQVKDVFA 122 (464)
Q Consensus 54 ~Q~~~~~~i~~~~---------~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~ 122 (464)
||.+++..++... ...+.+++..++|+|||.+++..+. .+...... ..++||++|. .+..||.+++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 4666666555443 3457799999999999998665444 33332211 1249999999 78899999999
Q ss_pred HhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHH-----HhhhcCCCcCCCC
Q 012427 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-----DHINATRGFTLEH 197 (464)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~-----~~l~~~~~~~~~~ 197 (464)
+++.....++..+.|....... ........+++|+|++.+. ..... +..-+
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~ 134 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRL---------------------SKNQLPKYDVVITTYETLRKARKKKDKED---LKQIK 134 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHT---------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSE
T ss_pred cccccccccccccccccccccc---------------------cccccccceeeeccccccccccccccccc---ccccc
Confidence 9986445677777776611110 0112244689999999998 21111 11234
Q ss_pred ccEEEEehhhHh
Q 012427 198 LCYLVVDETDRL 209 (464)
Q Consensus 198 ~~~iIvDE~H~~ 209 (464)
+++||+||+|.+
T Consensus 135 ~~~vIvDEaH~~ 146 (299)
T PF00176_consen 135 WDRVIVDEAHRL 146 (299)
T ss_dssp EEEEEETTGGGG
T ss_pred ceeEEEeccccc
Confidence 899999999988
No 167
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.26 E-value=7.7e-11 Score=117.12 Aligned_cols=352 Identities=19% Similarity=0.197 Sum_probs=195.6
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.++..|. +..+..+..-++.+-||-|||+++.+|+.-..+.+ ..+.+++....|+..-++++.++...+|
T Consensus 80 ~~~dVQl------iG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~g----kgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 80 RHFDVQL------LGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAG----KGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred ChhhHHH------hhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCC----CCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 4555663 33444467779999999999999888766554433 3699999999999999999999999999
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-----HHhh-hcCCCcCCCCccEEEE
Q 012427 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-----MDHI-NATRGFTLEHLCYLVV 203 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-----~~~l-~~~~~~~~~~~~~iIv 203 (464)
+++++...+.+...+... -.++|..+|..-| .+.+ ..........+.+.|+
T Consensus 150 lsvG~~~~~m~~~ek~~a-----------------------Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIv 206 (822)
T COG0653 150 LSVGVILAGMSPEEKRAA-----------------------YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIV 206 (822)
T ss_pred CceeeccCCCChHHHHHH-----------------------HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEE
Confidence 999999998866555333 2358888886543 2211 1111123456788999
Q ss_pred ehhhHhhh----------H------hhhhhHHHHHHhccccccc---------------------------cccccc---
Q 012427 204 DETDRLLR----------E------AYQAWLPTVLQLTRSDNEN---------------------------RFSDAS--- 237 (464)
Q Consensus 204 DE~H~~~~----------~------~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~--- 237 (464)
||++.++= . .+...+..+...+...... .++...
T Consensus 207 DEvDSILIDEARtPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~ 286 (822)
T COG0653 207 DEVDSILIDEARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNL 286 (822)
T ss_pred cchhheeeeccccceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHH
Confidence 99996521 1 1122222222211111000 000000
Q ss_pred ---------------------------cccccccccchhhhccc--cccccCC---CCCCce-----------------e
Q 012427 238 ---------------------------TFLPSAFGSLKTIRRCG--VERGFKD---KPYPRL-----------------V 268 (464)
Q Consensus 238 ---------------------------~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~-----------------~ 268 (464)
.......+....-+++. +.++++. ....+. .
T Consensus 287 ~h~~~~alrA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~k 366 (822)
T COG0653 287 VHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPK 366 (822)
T ss_pred HhhHHHHHHHHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhh
Confidence 00000000000000000 0000000 001111 1
Q ss_pred eEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCCeEEEEecChhhHH
Q 012427 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTH 346 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~s~~~~~ 346 (464)
...+|+|.......+...+..+.+.++..... .... ..-........|..+++..+.. ..++++||-+.+++..+
T Consensus 367 l~gmTGTa~te~~EF~~iY~l~vv~iPTnrp~--~R~D-~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE 443 (822)
T COG0653 367 LAGMTGTADTEEEEFDVIYGLDVVVIPTNRPI--IRLD-EPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSE 443 (822)
T ss_pred hcCCCCcchhhhhhhhhccCCceeeccCCCcc--cCCC-CccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecch
Confidence 23344444333333333333333333322211 1111 1112223445566666555543 36889999999999999
Q ss_pred HHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCe-eEEEEcccccccCCCCC-CC----------eEEEecCCC
Q 012427 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI-QVLVSSDAMTRGMDVEG-VN----------NVVNYDKPA 414 (464)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~iLi~t~~~~~Gidip~-~~----------~vi~~~~~~ 414 (464)
.+.+.|.+.+ ++-.+++..-...+-..+.. .|.. -+-|+|+|+++|-||.= -+ +||-.....
T Consensus 444 ~ls~~L~~~~---i~h~VLNAk~h~~EA~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhE 517 (822)
T COG0653 444 LLSKLLRKAG---IPHNVLNAKNHAREAEIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHE 517 (822)
T ss_pred hHHHHHHhcC---CCceeeccccHHHHHHHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccch
Confidence 9999999877 55555555554333222322 3333 46799999999999951 11 355555555
Q ss_pred CcchhhhhhhhhhcCCCCccEEEEeeCcc
Q 012427 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (464)
Q Consensus 415 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 443 (464)
|.+.--|..||+||.|-.|..-.|++-++
T Consensus 518 SRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 518 SRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred hhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 55555599999999998888877765443
No 168
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=5.6e-10 Score=103.52 Aligned_cols=372 Identities=17% Similarity=0.226 Sum_probs=216.6
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEE-ECCCCchh--HHHhHHHHHHHHHhhc---------------------------
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCI-NSPTGSGK--TLSYALPIVQTLSNRA--------------------------- 98 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li-~~~tG~GK--T~~~~~~~l~~~~~~~--------------------------- 98 (464)
..+++.|.+.+..+.+ -++++. ....+.|+ +-+|++.+++.+.+..
T Consensus 215 ~pltalQ~~L~~~m~~----YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG 290 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFN----YRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQG 290 (698)
T ss_pred CcchHHHHHHHHHHHh----hhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcC
Confidence 4789999888655443 466655 33334455 4567777777764421
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhccccCc---------eEEEeecC-Cch-------hHHHHHh-h--ccccccccc
Q 012427 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGL---------SVGLAVGQ-SSI-------ADEISEL-I--KRPKLEAGI 158 (464)
Q Consensus 99 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~---------~v~~~~g~-~~~-------~~~~~~~-~--~~~~~~~~~ 158 (464)
...++||||||+++-|-.+...+..++.+.+- +...-+++ +.. ...-..+ . ....+.-|+
T Consensus 291 ~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl 370 (698)
T KOG2340|consen 291 FTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGL 370 (698)
T ss_pred CCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhH
Confidence 13478999999999999988888887443211 00000110 000 0000000 0 000001111
Q ss_pred cCCchhHHHhhh-cCCcEEEeCchHHHHhhhcCCC----c-CCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccc-
Q 012427 159 CYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG----F-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN- 231 (464)
Q Consensus 159 ~~~~~~~~~~~~-~~~~IiI~T~~~l~~~l~~~~~----~-~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~- 231 (464)
.++...+...-. ...+|+||+|--|.-.+..... + .++++.++|+|.+|.++.++|.. +..++..+...+..
T Consensus 371 ~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-l~~ifdHLn~~P~k~ 449 (698)
T KOG2340|consen 371 AFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-LLHIFDHLNLQPSKQ 449 (698)
T ss_pred HHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHhhcCcccc
Confidence 111222222211 3479999999887666653221 2 27889999999999998888764 45555555544433
Q ss_pred cccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhccccc---CCeeeec-------CCccc
Q 012427 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH---HPLFLTT-------GETRY 301 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~---~~~~~~~-------~~~~~ 301 (464)
...+.+...+.+++..+.+.+ |.++||+...+....+...... ..+.... .....
T Consensus 450 h~~DfSRVR~wyL~~qsr~~r---------------Qtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~ 514 (698)
T KOG2340|consen 450 HDVDFSRVRMWYLDGQSRYFR---------------QTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGI 514 (698)
T ss_pred cCCChhheehheeccHHHHHH---------------HHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccc
Confidence 455667777888888777666 7777777655443332221111 1111100 00111
Q ss_pred cCcccccccee---eccCCchHHH-HHHHHHhh---CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHH
Q 012427 302 KLPERLESYKL---ICESKLKPLY-LVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (464)
Q Consensus 302 ~~~~~~~~~~~---~~~~~~~~~~-l~~~l~~~---~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r 374 (464)
.+....+.+.. ....+.+... +..++... ....+||+.+|.-+--++..++++.. +....+|...+...-
T Consensus 515 ~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~---i~F~~i~EYssk~~v 591 (698)
T KOG2340|consen 515 PLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEE---ISFVMINEYSSKSKV 591 (698)
T ss_pred hhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhh---cchHHHhhhhhHhhh
Confidence 11111222111 1112223332 22233222 23468999999999999999999876 677777777777777
Q ss_pred HHHHHHHhcCCeeEEEEcccc--cccCCCCCCCeEEEecCCCCcchh---hhhhhhhhcCCC----CccEEEEeeCcc
Q 012427 375 SKTLKAFREGKIQVLVSSDAM--TRGMDVEGVNNVVNYDKPAYIKTY---IHRAGRTARAGQ----LGRCFTLLHKDE 443 (464)
Q Consensus 375 ~~~~~~f~~~~~~iLi~t~~~--~~Gidip~~~~vi~~~~~~s~~~~---~Q~~GR~~R~g~----~g~~~~~~~~~~ 443 (464)
.+..+.|-.|...+|+.|.-+ -+-.++.++..||+|.+|.++.-| +-+.+|..-.|+ .-.|.+++++=|
T Consensus 592 sRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 592 SRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred hHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 788889999999999999875 367899999999999999998765 455556554432 225566665543
No 169
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=99.07 E-value=6.5e-08 Score=93.08 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=75.2
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccc----eeEeeccCcccHHHHHHHHHHHh----cCCeeEEEEc--ccccccCC
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGELR----IKIKEYSGLQRQSVRSKTLKAFR----EGKIQVLVSS--DAMTRGMD 400 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~r~~~~~~f~----~~~~~iLi~t--~~~~~Gid 400 (464)
-++.+++|++|.+....+.++..+.|... .+.+.+-..-+ -.++++.|. .|.-.||++. .-+++|||
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 35889999999999999999888654211 12222222222 245666665 3444566654 67899999
Q ss_pred CCC--CCeEEEecCCCC--------------------c------------chhhhhhhhhhcCCCCccEEEEeeCccc
Q 012427 401 VEG--VNNVVNYDKPAY--------------------I------------KTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 401 ip~--~~~vi~~~~~~s--------------------~------------~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
+.+ +++||..+.|.. + ...=|.+|||.|--++=.+++++|.+..
T Consensus 705 F~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~RY~ 782 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKRYA 782 (821)
T ss_pred cccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhhhc
Confidence 986 778998887722 0 1123999999998777778888877655
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.02 E-value=5.4e-09 Score=92.34 Aligned_cols=131 Identities=24% Similarity=0.257 Sum_probs=93.3
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
.|+ .|++.|.-+.-.+.. |+ ++++.||-|||++..+++.-..+.+ ..|-|+|.+..|+..-++++..+.
T Consensus 74 ~g~-~p~~vQll~~l~L~~----G~--laEm~TGEGKTli~~l~a~~~AL~G----~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHK----GR--LAEMKTGEGKTLIAALPAALNALQG----KGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp TS-----HHHHHHHHHHHT----TS--EEEESTTSHHHHHHHHHHHHHHTTS----S-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhccc----ce--eEEecCCCCcHHHHHHHHHHHHHhc----CCcEEEeccHHHhhccHHHHHHHH
Confidence 454 789999777555432 44 9999999999999887776665543 379999999999999999999999
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHH-hhhcC----CCc-CCCCcc
Q 012427 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD-HINAT----RGF-TLEHLC 199 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~-~l~~~----~~~-~~~~~~ 199 (464)
..+|+.++...++.+...+...+ .++|+.+|...+.- .|+.. ... ....+.
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y-----------------------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~ 199 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAY-----------------------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFD 199 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHH-----------------------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSS
T ss_pred HHhhhccccCccccCHHHHHHHH-----------------------hCcccccccchhhHHHHHHHHhhccchhccCCCC
Confidence 99999999999998755442222 24899999887753 33221 111 246789
Q ss_pred EEEEehhhHhh
Q 012427 200 YLVVDETDRLL 210 (464)
Q Consensus 200 ~iIvDE~H~~~ 210 (464)
++||||+|.++
T Consensus 200 ~~ivDEvDs~L 210 (266)
T PF07517_consen 200 FAIVDEVDSIL 210 (266)
T ss_dssp EEEECTHHHHT
T ss_pred EEEEeccceEE
Confidence 99999999873
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.01 E-value=2e-08 Score=102.55 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=41.5
Q ss_pred CeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcC
Q 012427 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (464)
Q Consensus 385 ~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 429 (464)
..++|++-+++.+|.|.|++-.++-+....|...-.|.+||+.|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 578999999999999999998888888888888999999999996
No 172
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.95 E-value=7.1e-08 Score=89.72 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=53.1
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (464)
|+|...+|-|.+-+.++-..+-.+.++++.+|+|+|||.+.+..++..-..-+....+.++-+-|..=.+....+++
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHH
Confidence 56889999999998888777777889999999999999886544443333332234466776655444444444444
No 173
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.92 E-value=2.7e-09 Score=88.95 Aligned_cols=115 Identities=19% Similarity=0.219 Sum_probs=76.6
Q ss_pred hCCCeEEEEecChhhHHHHHHHHhhcCc-cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc--cccccCCCCC--C
Q 012427 330 LGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD--AMTRGMDVEG--V 404 (464)
Q Consensus 330 ~~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~--~~~~Gidip~--~ 404 (464)
..++++|||++|.+..+.+.+.+++... .++.+..- ...++..+++.|+.++-.||+++. .+++|+|+|+ +
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 3468999999999999999999986531 11222222 245678999999999999999998 9999999996 7
Q ss_pred CeEEEecCCCC------------------------------cchhhhhhhhhhcCCCCccEEEEeeCcccccch
Q 012427 405 NNVVNYDKPAY------------------------------IKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 405 ~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 448 (464)
++||+.+.|.. ...+.|.+||+.|...+--+++++|++-....+
T Consensus 83 r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R~~~~~y 156 (167)
T PF13307_consen 83 RAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSRFLSKRY 156 (167)
T ss_dssp EEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGGGGGHHH
T ss_pred heeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCccccchh
Confidence 78999998731 112369999999997655555555555444333
No 174
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.84 E-value=1.1e-08 Score=100.59 Aligned_cols=110 Identities=21% Similarity=0.315 Sum_probs=84.3
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCc----cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCe
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 406 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~ 406 (464)
-.+-++||.+--...-.++..+..+.. ..+.+...|+.....+...+.+....|..++++.|.+....+.+-++..
T Consensus 642 i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~ 721 (1282)
T KOG0921|consen 642 IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVY 721 (1282)
T ss_pred CccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeE
Confidence 356799999999999888888876431 2256778899998888888888888899999999999888877766555
Q ss_pred EEEecC------------------CCCcchhhhhhhhhhcCCCCccEEEEeeC
Q 012427 407 VVNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHK 441 (464)
Q Consensus 407 vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 441 (464)
|++.+. ..|.....|+.||+||. +.|.|...++.
T Consensus 722 vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 722 VIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 554332 14566789999999998 68888777654
No 175
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.80 E-value=5.9e-07 Score=87.49 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=87.5
Q ss_pred CCeEEEEecChhhHHHHHHHHhhcCc---------------cceeEeeccCcccHHHHHHHHHHHhcCC-e--eEEEEcc
Q 012427 332 EEKCIVFTSSVESTHRLCTLLNHFGE---------------LRIKIKEYSGLQRQSVRSKTLKAFREGK-I--QVLVSSD 393 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~---------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~--~iLi~t~ 393 (464)
+.++|+|..+......+.+.|.+... .+.....+.|..+.++|+.++++|.+.- + -++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 45899999999888888888876311 1123456788889999999999998542 3 4678899
Q ss_pred cccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEe
Q 012427 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439 (464)
Q Consensus 394 ~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 439 (464)
...-|||+-..+-+++++..+++.--.|.+-|+-|.|+.+.|+++=
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999999999999999999999999999999999999888887653
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.74 E-value=3.2e-08 Score=88.29 Aligned_cols=68 Identities=26% Similarity=0.314 Sum_probs=49.0
Q ss_pred cchhhHHhHHhhhCCCCCCCC-EEEECCCCchhHHHhHHHHHHHHH-----hhccCCccEEEEcccHHHHHHHHHHHHH
Q 012427 51 LFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLS-----NRAVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~~~-~li~~~tG~GKT~~~~~~~l~~~~-----~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
|++.|.+|+..++. ... .+++||+|+|||.+... ++..+. .....+.++|+++|+..-++++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALS----SNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67889999887775 555 89999999999976544 333331 1234566899999999999999999887
No 177
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.51 E-value=3.8e-08 Score=98.77 Aligned_cols=132 Identities=20% Similarity=0.285 Sum_probs=96.3
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
+.+.+.|...+...+. ...++++-+|||+|||.++.+++...+... ++.++++++|-++|+..-.+.+.+.....
T Consensus 926 ~~fn~~q~~if~~~y~---td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--p~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 926 KYFNPIQTQIFHCLYH---TDLNFLLGAPTGSGKTVVAELAIFRALSYY--PGSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred cccCCccceEEEEEee---cchhhhhcCCccCcchhHHHHHHHHHhccC--CCccEEEEcCCchhhcccccchhhhcccC
Confidence 3566777766544332 467899999999999999999888776654 45689999999999987666655543333
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCC-CcCCCCccEEEEehhh
Q 012427 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETD 207 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~-~~~~~~~~~iIvDE~H 207 (464)
|+++....|+...... .-..++++|+||++.-...++.+ ...+.+++++|+||.|
T Consensus 1001 g~k~ie~tgd~~pd~~------------------------~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~h 1056 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPDVK------------------------AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIH 1056 (1230)
T ss_pred CceeEeccCccCCChh------------------------heecCceEEcccccccCccccccchhhhccccceeecccc
Confidence 7888888887643311 12346999999999876655433 2347789999999999
Q ss_pred Hh
Q 012427 208 RL 209 (464)
Q Consensus 208 ~~ 209 (464)
++
T Consensus 1057 ll 1058 (1230)
T KOG0952|consen 1057 LL 1058 (1230)
T ss_pred cc
Confidence 66
No 178
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.47 E-value=5.3e-07 Score=86.50 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=68.1
Q ss_pred HHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHH
Q 012427 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (464)
Q Consensus 42 ~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 121 (464)
.+...++..|+.-|..|..+++. ..-.|++||+|+|||.+....+.+.+... ..++|+++|+.--++|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~~---~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQH---AGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHhc---CCceEEEcccchhHHHHHHHH
Confidence 55667888999999999888875 66689999999999998776555555543 447999999999999999999
Q ss_pred HHhccccCceEEEeecC
Q 012427 122 AAIAPAVGLSVGLAVGQ 138 (464)
Q Consensus 122 ~~~~~~~~~~v~~~~g~ 138 (464)
.+- |++|.-++..
T Consensus 475 h~t----gLKVvRl~ak 487 (935)
T KOG1802|consen 475 HKT----GLKVVRLCAK 487 (935)
T ss_pred Hhc----CceEeeeehh
Confidence 875 5666555543
No 179
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.45 E-value=5.5e-07 Score=89.31 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=99.7
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc--------------------------
Q 012427 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------------------------- 98 (464)
Q Consensus 45 ~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~-------------------------- 98 (464)
.|+| +|++.|...+..++..+.+.+++++..|||+|||+..+-..+.....-+
T Consensus 17 ~fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 4566 6899999999999998888999999999999999986644443332110
Q ss_pred -------c-----CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHH------------HHHhhccccc
Q 012427 99 -------V-----RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE------------ISELIKRPKL 154 (464)
Q Consensus 99 -------~-----~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~------------~~~~~~~~~~ 154 (464)
. ..+++.+-+-|-....|..+++++.... ++..++-....+.-. ...+.+....
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~ 173 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKS 173 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhccc
Confidence 0 1356777777777777888888876554 333333222221100 0000000000
Q ss_pred c-------------------------------ccccCCchhHHHhhhcCCcEEEeCchHHHHhhhc-CCCcCCCCccEEE
Q 012427 155 E-------------------------------AGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTLEHLCYLV 202 (464)
Q Consensus 155 ~-------------------------------~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~-~~~~~~~~~~~iI 202 (464)
. .....++=.....+.+.++||++-|..|.+-..+ ...+++.+ ..||
T Consensus 174 ~~C~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVI 252 (945)
T KOG1132|consen 174 RSCHFYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVI 252 (945)
T ss_pred ccccccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEE
Confidence 0 0011122233466778899999999999875544 33355543 4899
Q ss_pred EehhhHh
Q 012427 203 VDETDRL 209 (464)
Q Consensus 203 vDE~H~~ 209 (464)
+||||.+
T Consensus 253 fDEAHNi 259 (945)
T KOG1132|consen 253 FDEAHNI 259 (945)
T ss_pred EeccccH
Confidence 9999975
No 180
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.45 E-value=3.6e-07 Score=91.39 Aligned_cols=129 Identities=21% Similarity=0.249 Sum_probs=100.0
Q ss_pred CchHHHHHHHHHhh--CC-CeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCC-ee-EEEE
Q 012427 317 KLKPLYLVALLQSL--GE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQ-VLVS 391 (464)
Q Consensus 317 ~~~~~~l~~~l~~~--~~-~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-iLi~ 391 (464)
..++..+...+... .. ++++||+.-+..+..++..|...+ +....+.|.|+...|.+.+..|..+. .. .+++
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~---~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~S 597 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKG---FVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMS 597 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcc---cccchhhhhhHHHHHHhhhcccccCccHHHHHHH
Confidence 34444455555432 12 399999999999999998888555 78888999999999999999998543 22 3566
Q ss_pred cccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEE--EeeCcccccch
Q 012427 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT--LLHKDEKKGAI 448 (464)
Q Consensus 392 t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~~~~~~ 448 (464)
..+.+.|+++..+++|+..++-+|+..-.|.+-|+.|.|+...+.+ |+-.+..++.+
T Consensus 598 lkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~ 656 (674)
T KOG1001|consen 598 LKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERI 656 (674)
T ss_pred HHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHH
Confidence 7788999999999999999999999999999999999998776654 44444444433
No 181
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.27 E-value=1.7e-05 Score=78.79 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=42.3
Q ss_pred CCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcC
Q 012427 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (464)
Q Consensus 384 ~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 429 (464)
...++|++-.++.+|.|-|++=.++-+....|..+=.|.+||+.|-
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 3488999999999999999998888899999999999999999995
No 182
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.22 E-value=5.1e-06 Score=85.24 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=42.3
Q ss_pred hhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHh
Q 012427 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (464)
Q Consensus 169 ~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~ 224 (464)
++....|+++||..+..-+..+. +++..+..|||||||++....-...+-+++..
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~r-i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~ 58 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGI-IPPELITGILVLRADRIIESSQEAFILRLYRQ 58 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCC-CCHHHccEEEEeecccccccccHHHHHHHHHH
Confidence 44556899999999987666544 88899999999999999766666555555543
No 183
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.22 E-value=7.6e-06 Score=70.16 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=44.3
Q ss_pred ccchhhHHhHHhhhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHH
Q 012427 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~-~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 120 (464)
+|++-|.+++..++. ++ +-+++.|+.|+|||.+ +..+...+... +.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~---g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILT---SGDRVSVLQGPAGTGKTTL-LKALAEALEAA---GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHH---CTCSEEEEEESTTSTHHHH-HHHHHHHHHHT---T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---cCCeEEEEEECCCCCHHHH-HHHHHHHHHhC---CCeEEEECCcHHHHHHHHHh
Confidence 478899999998864 23 4478899999999986 33344444442 45899999999887775554
No 184
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.21 E-value=5.5e-06 Score=79.23 Aligned_cols=67 Identities=25% Similarity=0.267 Sum_probs=51.6
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (464)
..+.+-|+.|...... ...-.+++||+|+|||.+....+.+.+..+ .++|+..||..-++.+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~----k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK----KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC----CeEEEEcCchHHHHHHHHHhc
Confidence 4788889888665543 225578999999999999777666655543 489999999999988888644
No 185
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.19 E-value=6.7e-06 Score=65.95 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=53.5
Q ss_pred ccHHHHHHHHHHHhcCC-eeEEEEcccccccCCCCC--CCeEEEecCCCC------------------------------
Q 012427 369 QRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEG--VNNVVNYDKPAY------------------------------ 415 (464)
Q Consensus 369 ~~~~~r~~~~~~f~~~~-~~iLi~t~~~~~Gidip~--~~~vi~~~~~~s------------------------------ 415 (464)
....+...+++.|+... ..||+++..+++|+|+|+ +++||+.+.|..
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 33445688999998654 379999988999999997 678999886621
Q ss_pred -cchhhhhhhhhhcCCCCccEEEEeeC
Q 012427 416 -IKTYIHRAGRTARAGQLGRCFTLLHK 441 (464)
Q Consensus 416 -~~~~~Q~~GR~~R~g~~g~~~~~~~~ 441 (464)
...+.|.+||+.|...+--+++++|+
T Consensus 111 a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 111 AMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHhCccccCcCceEEEEEEec
Confidence 12346999999998655555555554
No 186
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.17 E-value=9.8e-06 Score=72.07 Aligned_cols=134 Identities=16% Similarity=0.094 Sum_probs=85.3
Q ss_pred ccchhhHHhHHhhhCCC----CC--CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 012427 50 SLFPVQVAVWQETIGPG----LF--ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~----~~--~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
.++..|.+++-....+. .. ..-+++-..||.||-.+..-.+++.+.++ ..|.++++.+.+|.....+.++.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G---r~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG---RKRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC---CCceEEEECChhhhhHHHHHHHH
Confidence 57778877765443221 12 34588899999999999888788888875 33799999999999998888888
Q ss_pred hccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCC----cC-----
Q 012427 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG----FT----- 194 (464)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~----~~----- 194 (464)
+... .+.+..+..-. ..+. ..-.-.|+++||..|...-..... +.
T Consensus 114 IG~~-~i~v~~l~~~~-~~~~------------------------~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 114 IGAD-NIPVHPLNKFK-YGDI------------------------IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred hCCC-cccceechhhc-cCcC------------------------CCCCCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 7543 23322222100 0000 011236999999988765422110 00
Q ss_pred --CCCccEEEEehhhHhhhH
Q 012427 195 --LEHLCYLVVDETDRLLRE 212 (464)
Q Consensus 195 --~~~~~~iIvDE~H~~~~~ 212 (464)
-+.-.+||+||||.+.+.
T Consensus 168 ~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred HhcCCCceEEeccchhcCCC
Confidence 122359999999987543
No 187
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.17 E-value=1.6e-06 Score=73.66 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=41.1
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
...+..|..+++.+.+ ..-+++.||.|+|||+.++..+++.+..+ ...+++++-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g--~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEG--EYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTT--S-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCcEEEEEecCCCC
Confidence 4567889999888773 67799999999999999999999888874 34478888887653
No 188
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.15 E-value=6.9e-06 Score=66.02 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCe---eEEEEccc--ccccCCCCC--CCeEEEecCCCC------------------------------
Q 012427 373 VRSKTLKAFREGKI---QVLVSSDA--MTRGMDVEG--VNNVVNYDKPAY------------------------------ 415 (464)
Q Consensus 373 ~r~~~~~~f~~~~~---~iLi~t~~--~~~Gidip~--~~~vi~~~~~~s------------------------------ 415 (464)
+..++++.|++... .||+++.. ++||||+|+ +++||+.+.|..
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34688888986543 68888876 999999997 778999887621
Q ss_pred -cchhhhhhhhhhcCCCCccEEEEeeCc
Q 012427 416 -IKTYIHRAGRTARAGQLGRCFTLLHKD 442 (464)
Q Consensus 416 -~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 442 (464)
...+.|.+||+.|...+--+++++|.+
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D~R 139 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLDKR 139 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEecc
Confidence 123469999999987665566666543
No 189
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.15 E-value=1.9e-05 Score=79.93 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=53.2
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
..+++.|.+|+..++. ....+++.||+|+|||.+....+.+.+.. +.++|+++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~----g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKR----GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 4679999999877654 23678999999999998765544444433 348999999999999998888763
No 190
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.13 E-value=4.9e-05 Score=65.21 Aligned_cols=123 Identities=20% Similarity=0.309 Sum_probs=76.4
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 45 ~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
+.++ -+|+-|.++..++.+. ..+.|.+.++-+|.|||.+ ++|++..+..++ ..-+.+++|. +|.+|..+.+..-
T Consensus 19 e~~i-liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg--~~LvrviVpk-~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 19 ESNI-LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSV-IVPMLALALADG--SRLVRVIVPK-ALLEQMRQMLRSR 92 (229)
T ss_pred HcCc-eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccch-HHHHHHHHHcCC--CcEEEEEcCH-HHHHHHHHHHHHH
Confidence 3454 7999999998888864 4678999999999999988 555666655442 2356667776 6888888888764
Q ss_pred ccc-cCceEEE--eecCCchhHH-HHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhh
Q 012427 125 APA-VGLSVGL--AVGQSSIADE-ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (464)
Q Consensus 125 ~~~-~~~~v~~--~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l 187 (464)
... .+-++.. +....+.... ...+ ..+.+.......|+++||+.++++.
T Consensus 93 lg~l~~r~i~~lpFsR~~~~~~~~~~~~--------------~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 93 LGGLLNRRIYHLPFSRSTPLTPETLEKI--------------RQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred HHHHhCCeeEEecccCCCCCCHHHHHHH--------------HHHHHHHHHcCCEEEeChHHHHHHH
Confidence 433 2333322 2222222111 1111 1112233345679999999886643
No 191
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.09 E-value=1e-05 Score=76.52 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=60.9
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhc
Q 012427 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 150 (464)
-++|.|.+|||||++++-.+. .+.. ...+.++++++++..|...+.+.+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-ELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-Hhhc-cccCCceEEEEecchHHHHHHHHHhhhccc-----------------------
Confidence 478999999999998654333 3311 224557999999999998888777654300
Q ss_pred cccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhh
Q 012427 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~ 211 (464)
......+..+..+...... .......+++|||||||++..
T Consensus 58 --------------------~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 --------------------KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --------------------chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhh
Confidence 0012334444444433331 113356789999999999976
No 192
>PF13245 AAA_19: Part of AAA domain
Probab=98.08 E-value=1.8e-05 Score=55.86 Aligned_cols=53 Identities=32% Similarity=0.454 Sum_probs=39.4
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHH
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 121 (464)
+.-+++.+|+|+|||.+.+-.+.+.+......+.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34466699999999987666565555431112568999999999999888877
No 193
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.0014 Score=63.03 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=63.9
Q ss_pred EEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc-ccCceEEEeecCCchhHHHHHhhcc
Q 012427 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP-AVGLSVGLAVGQSSIADEISELIKR 151 (464)
Q Consensus 73 li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~ 151 (464)
++.++||+|||++.+..+++....+ ....|+.|....+.+.....+..-.. ..=..-.+.+++..+.-.
T Consensus 1 lf~matgsgkt~~ma~lil~~y~kg---yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ik------- 70 (812)
T COG3421 1 LFEMATGSGKTLVMAGLILECYKKG---YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIK------- 70 (812)
T ss_pred CcccccCCChhhHHHHHHHHHHHhc---hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeee-------
Confidence 3578999999999777788777664 33578888777766544333321100 000000001111111000
Q ss_pred ccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCC--cC---CCCcc-EEEEehhhHhhhH
Q 012427 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG--FT---LEHLC-YLVVDETDRLLRE 212 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~--~~---~~~~~-~iIvDE~H~~~~~ 212 (464)
.+. ..........|+++|.+.|...+.+.+. .. +.+.. +.+-|||||+-+.
T Consensus 71 ----kvn------~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~ 127 (812)
T COG3421 71 ----KVN------NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTE 127 (812)
T ss_pred ----eec------ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhh
Confidence 000 0000234458999999999887765432 11 23333 5677999998543
No 194
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.73 E-value=9.3e-05 Score=69.08 Aligned_cols=70 Identities=26% Similarity=0.223 Sum_probs=53.7
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
|++-|.+++.. ..++++|.|+.|||||.+.+.-++..+........++|++|+|+..+..+.+.+...+.
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 46778887554 26889999999999999877666666665544566899999999999999888887644
No 195
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.70 E-value=3.7e-06 Score=83.30 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=61.5
Q ss_pred CCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhc---CCeeEEE
Q 012427 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE---GKIQVLV 390 (464)
Q Consensus 316 ~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~iLi 390 (464)
...+...|..+++.. .+.++++|..-+....-+..++...+ ....+.|..+..+|.+.+++|.. ...-+|.
T Consensus 613 ~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~----~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfll 688 (696)
T KOG0383|consen 613 ASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG----KYERIDGPITGPERQAAIDRFNAPGSNQFCFLL 688 (696)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC----cceeccCCccchhhhhhccccCCCCccceEEEe
Confidence 345566666666654 46799999999999999999987643 66788999999999999999983 3456788
Q ss_pred Eccccccc
Q 012427 391 SSDAMTRG 398 (464)
Q Consensus 391 ~t~~~~~G 398 (464)
+|.+.+.|
T Consensus 689 stra~g~g 696 (696)
T KOG0383|consen 689 STRAGGLG 696 (696)
T ss_pred ecccccCC
Confidence 99886654
No 196
>PRK10536 hypothetical protein; Provisional
Probab=97.66 E-value=7.9e-05 Score=65.25 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=42.1
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 012427 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (464)
Q Consensus 47 ~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~ 112 (464)
++...+..|..++..+.. +..+++.||+|+|||+.+...+++.+..+ ...++++.-|+..
T Consensus 56 ~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~--~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHK--DVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcC--CeeEEEEeCCCCC
Confidence 455667778777665543 56889999999999999887777666553 2335666656654
No 197
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.66 E-value=0.00029 Score=70.69 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=47.8
Q ss_pred chhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHh-hccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 52 ~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
.++|+.|....+. ++-+++.|++|+|||.+... ++..+.. ......++++++||-.-+..+.+.+....
T Consensus 154 ~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 154 VDWQKVAAAVALT----RRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 4799999665543 67799999999999987433 3333332 11223468889999988888777766543
No 198
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.57 E-value=0.00054 Score=70.68 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=47.7
Q ss_pred HHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH
Q 012427 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (464)
Q Consensus 44 ~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~ 118 (464)
...++ .+++.|++|+..+.. ++-+++.|++|+|||.+. -.+++.+.... +..++++++||-.-+..+.
T Consensus 318 ~~~~~-~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 318 KKLRK-GLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTIT-RAIIELAEELG-GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred HhcCC-CCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHH-HHHHHHHHHcC-CCceEEEEeCchHHHHHHH
Confidence 34564 799999999887753 678999999999999863 33444444321 1146888899977665443
No 199
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.56 E-value=0.00022 Score=73.21 Aligned_cols=70 Identities=20% Similarity=0.107 Sum_probs=54.6
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
.|++-|++++.+ ...+++|.|+.|||||.+...-+...+...+....++|++|-|+..+.++.+.+....
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478889888543 2577899999999999997766666665433345579999999999999888888764
No 200
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.53 E-value=0.001 Score=67.50 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
++|.+.+.. +..|+.-|+.|+..++. .....++.|=+|+|||.+... ++..+.. .+.++|+.+-|-.-+
T Consensus 658 ~~p~~~~~~----~~~LN~dQr~A~~k~L~---aedy~LI~GMPGTGKTTtI~~-LIkiL~~---~gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 658 LIPKIKKII----LLRLNNDQRQALLKALA---AEDYALILGMPGTGKTTTISL-LIKILVA---LGKKVLLTSYTHSAV 726 (1100)
T ss_pred cCchhhHHH----HhhcCHHHHHHHHHHHh---ccchheeecCCCCCchhhHHH-HHHHHHH---cCCeEEEEehhhHHH
Confidence 555555542 34788999999766654 456689999999999987544 4434433 244799988888777
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcC
Q 012427 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~ 194 (464)
+.+.-.++.+ ++.+.-+-....+-+.++.+.. .......--.......+...|+.+|=-.+.+.+ +.
T Consensus 727 DNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~----~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-----f~ 793 (1100)
T KOG1805|consen 727 DNILIKLKGF----GIYILRLGSEEKIHPDVEEFTL----TNETSEKSYADLKKFLDQTSIVACTCLGINHPL-----FV 793 (1100)
T ss_pred HHHHHHHhcc----CcceeecCCccccchHHHHHhc----ccccchhhHHHHHHHhCCCcEEEEEccCCCchh-----hh
Confidence 7777777765 4554433344444444444331 111111112233444566788888843333222 23
Q ss_pred CCCccEEEEehhhHh
Q 012427 195 LEHLCYLVVDETDRL 209 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~ 209 (464)
...|++.|+|||-.+
T Consensus 794 ~R~FD~cIiDEASQI 808 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQI 808 (1100)
T ss_pred ccccCEEEEcccccc
Confidence 456899999999976
No 201
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.52 E-value=0.00058 Score=68.39 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=46.5
Q ss_pred hhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc--CCccEEEEcccHHHHHHHHHHHHHh
Q 012427 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 53 ~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
++|+.++..++. ++-+++.|++|+|||.+..- ++..+..... ...++++.+||-.-+..+.+.+...
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVAR-LLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHH-HHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 689888666654 67899999999999987433 3333332111 1247999999988777777766554
No 202
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.50 E-value=0.00035 Score=72.60 Aligned_cols=72 Identities=21% Similarity=0.111 Sum_probs=56.0
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
..|++-|++++.+ ...+++|.|+.|||||.+...-+...+...+....++|++|-|+..+..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4688999988542 24689999999999999966666655554344455899999999999999998888743
No 203
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.46 E-value=0.00036 Score=72.50 Aligned_cols=72 Identities=17% Similarity=0.081 Sum_probs=55.9
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
..|++-|++++.+ ...+++|.|+.|||||.+...-+...+...+....++|+||-|+..+.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3689999988542 24689999999999999866656655544444455799999999999999998888753
No 204
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.35 E-value=0.00093 Score=68.24 Aligned_cols=83 Identities=18% Similarity=0.088 Sum_probs=61.5
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
..|++-|++++.. ...++++.|+.|||||.+.+.-+...+........++|+++.|+..+..+.+.+.......
T Consensus 195 ~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 5799999988432 2467899999999999987665655555544445589999999999999998888765533
Q ss_pred CceEEEeec
Q 012427 129 GLSVGLAVG 137 (464)
Q Consensus 129 ~~~v~~~~g 137 (464)
++.+..+|+
T Consensus 269 ~v~v~TFHS 277 (684)
T PRK11054 269 DITARTFHA 277 (684)
T ss_pred CcEEEeHHH
Confidence 555555554
No 205
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.31 E-value=0.0033 Score=65.30 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=44.1
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~ 117 (464)
.+++.|++|+..++. .++-+++.|++|+|||.+ +-++.+.+.. .+.++++++||-.-+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtl-l~~i~~~~~~---~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTM-LKAAREAWEA---AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHH-HHHHHHHHHh---CCCeEEEEeCcHHHHHHH
Confidence 689999999888764 235689999999999986 3334444443 245799999997655544
No 206
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0022 Score=60.63 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=25.4
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+..+++.||||+|||.+..-.+..........+.++.+++
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit 213 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT 213 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 3568899999999999876544433332212344566664
No 207
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.27 E-value=0.0029 Score=66.77 Aligned_cols=64 Identities=11% Similarity=-0.070 Sum_probs=45.4
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 012427 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~ 117 (464)
.|+ .|++-|.+++..++. .+.-+++.|+.|+|||.+ +-++.+.+.. .+.+++.++||-.-+..+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAM-LGVAREAWEA---AGYEVRGAALSGIAAENL 406 (988)
T ss_pred cCC-CCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEecCcHHHHHHH
Confidence 454 799999999887764 234578999999999986 4444444443 245799999997655443
No 208
>PRK06526 transposase; Provisional
Probab=97.24 E-value=0.0014 Score=58.39 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=25.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
.+.++++.||+|+|||..+...+.+.... +.++++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~----g~~v~f~t~ 134 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA----GHRVLFATA 134 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC----CCchhhhhH
Confidence 36889999999999998755444433332 335666443
No 209
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.24 E-value=0.0011 Score=68.56 Aligned_cols=70 Identities=21% Similarity=0.123 Sum_probs=53.9
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
|++-|.+++.+ ...+++|.|+.|||||.+.+.-+.+.+...+....++|+||.|+..+.++.+.+.+..+
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67889887543 25789999999999999977666666654333445799999999999998888877643
No 210
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.20 E-value=0.0036 Score=49.79 Aligned_cols=21 Identities=43% Similarity=0.496 Sum_probs=13.8
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 012427 68 FERDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~ 88 (464)
+++.+++.|++|+|||.+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHH
Confidence 356789999999999987544
No 211
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.17 E-value=0.00097 Score=59.09 Aligned_cols=37 Identities=24% Similarity=0.052 Sum_probs=25.7
Q ss_pred hhHHhHHhhhCCCCC--CCCEEEECCCCchhHHHhHHHH
Q 012427 54 VQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPI 90 (464)
Q Consensus 54 ~Q~~~~~~i~~~~~~--~~~~li~~~tG~GKT~~~~~~~ 90 (464)
.|..+.+.+.+.+.+ .-+.++.||+|+|||-++.+.+
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafa 78 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFA 78 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHH
Confidence 466665555544444 3678999999999999866433
No 212
>PRK08181 transposase; Validated
Probab=97.15 E-value=0.0032 Score=56.57 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=42.4
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHC-CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccC
Q 012427 22 SLFEDCPLDHLPCLDPRLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (464)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~~~~~-~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~ 100 (464)
..+++..++..+++++.....+... .| . ..++++++.||+|+|||..+...+.+....
T Consensus 75 ~tle~fd~~~~~~~~~~~~~~L~~~~~~--------------~---~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---- 133 (269)
T PRK08181 75 KTLDSFDFEAVPMVSKAQVMAIAAGDSW--------------L---AKGANLLLFGPPGGGKSHLAAAIGLALIEN---- 133 (269)
T ss_pred CCHhhCCccCCCCCCHHHHHHHHHHHHH--------------H---hcCceEEEEecCCCcHHHHHHHHHHHHHHc----
Confidence 3556655555555565555555432 11 1 136889999999999997655433333332
Q ss_pred CccEEEEcccHHHHHHH
Q 012427 101 CLRALVVLPTRDLALQV 117 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~ 117 (464)
+.+++++. ..+|..++
T Consensus 134 g~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 134 GWRVLFTR-TTDLVQKL 149 (269)
T ss_pred CCceeeee-HHHHHHHH
Confidence 33566654 34455544
No 213
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.13 E-value=0.0011 Score=62.90 Aligned_cols=61 Identities=26% Similarity=0.322 Sum_probs=41.9
Q ss_pred cchhhHHhHHhhhCCC--CCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 012427 51 LFPVQVAVWQETIGPG--LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~--~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~ 115 (464)
|++-|++++..+++++ ..+.++.+.|+-|+|||+.+- ++...+.. .+..+++++||-.-|.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~---~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS---RGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc---ccceEEEecchHHHHH
Confidence 6778999988875554 346789999999999998633 23333332 3446888888865443
No 214
>PRK04296 thymidine kinase; Provisional
Probab=97.13 E-value=0.001 Score=56.83 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=24.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
|.-.++.||+|+|||..++-.+. .+.. .+.+++++.|.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~-~~~~---~g~~v~i~k~~ 39 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAY-NYEE---RGMKVLVFKPA 39 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHH-HHHH---cCCeEEEEecc
Confidence 34468899999999976444333 3322 24478888663
No 215
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0018 Score=57.79 Aligned_cols=50 Identities=24% Similarity=0.277 Sum_probs=33.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (464)
++.++++.||+|+|||..+...+.+.+ . ++.++++ +++.+++.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~---~g~sv~f-~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K---AGISVLF-ITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H---cCCeEEE-EEHHHHHHHHHHHHh
Confidence 678999999999999997555444443 3 2334554 455567766665554
No 216
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.08 E-value=0.0072 Score=64.37 Aligned_cols=75 Identities=15% Similarity=0.024 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
.++.........++ .|++-|.+++..+.. .++-+++.|+.|+|||.+ +-++.+.+.. .+.+++.++||-.-+
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~-l~~~~~~~e~---~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTM-MKAAREAWEA---AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEEcCcHHHH
Confidence 34444444333344 799999999887642 356689999999999986 3334444443 245799999996655
Q ss_pred HHH
Q 012427 115 LQV 117 (464)
Q Consensus 115 ~q~ 117 (464)
..+
T Consensus 439 ~~L 441 (1102)
T PRK13826 439 EGL 441 (1102)
T ss_pred HHH
Confidence 443
No 217
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.07 E-value=0.00087 Score=59.64 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=50.4
Q ss_pred HHHHHHhcCCeeEEEEcccccccCCCCC--------CCeEEEecCCCCcchhhhhhhhhhcCCCCcc
Q 012427 376 KTLKAFREGKIQVLVSSDAMTRGMDVEG--------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (464)
Q Consensus 376 ~~~~~f~~~~~~iLi~t~~~~~Gidip~--------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~ 434 (464)
...+.|.+|+.+|+|-+.+.+.|+.+.. -.+-|.+.+|||....+|.+||++|.|+...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~ 118 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSA 118 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccC
Confidence 4567899999999999999999998853 2367788999999999999999999997443
No 218
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.99 E-value=0.0017 Score=67.82 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=55.3
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
..|++-|.+++.+ ...+++|.|+.|||||.+...-+...+...+....++|++|-|+..+..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3688999988543 25789999999999999877666666654333445799999999999888888877643
No 219
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.86 E-value=0.0043 Score=57.87 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=51.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHh
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (464)
++.+.+.||||.|||.+.+-.+..+.+..+ +..-.||-+.|--++ ..+.++.++..+++++..++........+..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhh--HHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 677899999999999987755554442222 222345555555444 35566667777789998888887776665544
No 220
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.86 E-value=0.0069 Score=49.03 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
+..+++.||+|+|||..... +...+.. .+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~-i~~~~~~---~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA-IANELFR---PGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHhhc---CCCCeEEEehh
Confidence 57899999999999975333 3333321 23345555443
No 221
>PRK06921 hypothetical protein; Provisional
Probab=96.52 E-value=0.012 Score=53.00 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=25.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
+.++++.|++|+|||..+.. +...+... .+..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~a-ia~~l~~~--~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA-AANELMRK--KGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHhhh--cCceEEEEEH
Confidence 57799999999999986443 44444332 1345777664
No 222
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.48 E-value=0.0099 Score=58.74 Aligned_cols=75 Identities=21% Similarity=0.105 Sum_probs=53.9
Q ss_pred hhhHHhHHhhhCCC-CCC----CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 012427 53 PVQVAVWQETIGPG-LFE----RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (464)
Q Consensus 53 ~~Q~~~~~~i~~~~-~~~----~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (464)
|+|.-.+..++.-- ..+ +.+++..|=|-|||......++..+.-.+..+..+++++++...+....+.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 56766666655220 012 4588999999999987666556555544445678999999999999999998888654
No 223
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.41 E-value=0.0082 Score=63.03 Aligned_cols=120 Identities=16% Similarity=0.093 Sum_probs=77.1
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHh--------------hccCCccEEEEcccHHHHHHHHHHHHHhccccCceEE
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSN--------------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~--------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~ 133 (464)
.|+++++.-..|.|||..-+...+...-. +....+.+||++|. ++..||.+++...+... +.+.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 35778999999999998754333322110 01123469999998 67889999999987753 7888
Q ss_pred EeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCC-------------CcCCC----
Q 012427 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-------------GFTLE---- 196 (464)
Q Consensus 134 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~-------------~~~~~---- 196 (464)
.+.|-.+...... . --..+|||++||+.|..-+.... .....
T Consensus 451 ~Y~Girk~~~~~~----------------~-----el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~ 509 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSP----------------F-----ELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLL 509 (1394)
T ss_pred EEechhhhcccCc----------------h-----hhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchH
Confidence 8888765432210 0 12346999999999876553321 01111
Q ss_pred --CccEEEEehhhHhh
Q 012427 197 --HLCYLVVDETDRLL 210 (464)
Q Consensus 197 --~~~~iIvDE~H~~~ 210 (464)
.+=-|++|||+++-
T Consensus 510 ~v~wWRIclDEaQMve 525 (1394)
T KOG0298|consen 510 MVNWWRICLDEAQMVE 525 (1394)
T ss_pred HHHHHHHhhhHHHhhc
Confidence 13368999999663
No 224
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.37 E-value=0.014 Score=53.24 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=24.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
++.+++.||||+|||.+....+....... .+.++.+++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~--g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEH--GNKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHc--CCCeEEEEE
Confidence 45688999999999988664444333321 123566664
No 225
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.011 Score=49.16 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=60.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHh
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (464)
++=.++.+|+++|||.. ++..+.+-...+.++++..|..+--- +......+-+.
T Consensus 4 g~l~~i~gpM~SGKT~e----Ll~r~~~~~~~g~~v~vfkp~iD~R~-------------~~~~V~Sr~G~--------- 57 (201)
T COG1435 4 GWLEFIYGPMFSGKTEE----LLRRARRYKEAGMKVLVFKPAIDTRY-------------GVGKVSSRIGL--------- 57 (201)
T ss_pred EEEEEEEccCcCcchHH----HHHHHHHHHHcCCeEEEEeccccccc-------------ccceeeeccCC---------
Confidence 34468899999999986 44444444445668999999654211 11111111111
Q ss_pred hccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHh
Q 012427 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~ 224 (464)
+..-++|-+...+.+.+...... ...++|.+|||+ +.+...-..+.++...
T Consensus 58 ----------------------~~~A~~i~~~~~i~~~i~~~~~~--~~~~~v~IDEaQ-F~~~~~v~~l~~lad~ 108 (201)
T COG1435 58 ----------------------SSEAVVIPSDTDIFDEIAALHEK--PPVDCVLIDEAQ-FFDEELVYVLNELADR 108 (201)
T ss_pred ----------------------cccceecCChHHHHHHHHhcccC--CCcCEEEEehhH-hCCHHHHHHHHHHHhh
Confidence 11246666666676666543211 127899999999 5555544555555544
No 226
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.27 E-value=0.055 Score=47.31 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=28.8
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHH
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 120 (464)
..+++.||+|+|||-. +.++...+.... ++.+++++... +........
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~-~~~~v~y~~~~-~f~~~~~~~ 82 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQH-PGKRVVYLSAE-EFIREFADA 82 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHC-TTS-EEEEEHH-HHHHHHHHH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhcc-ccccceeecHH-HHHHHHHHH
Confidence 3589999999999984 444555555432 34577777653 333333333
No 227
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.24 E-value=0.012 Score=51.72 Aligned_cols=86 Identities=22% Similarity=0.274 Sum_probs=61.1
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCC-chhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEe
Q 012427 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS-SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~ 178 (464)
+.+.+||||.+---+-.+.+.++.+-.. +..|..+.+.. .+.+++..+.. ...+|.||
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~--------------------~~~~i~vG 183 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKK--------------------TRVHIAVG 183 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHh--------------------CCceEEEe
Confidence 4577999999877787888888877321 23444445443 44444333221 23689999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEehhh
Q 012427 179 TPGRLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
||+++..++... .+.++++..||+|--|
T Consensus 184 TP~Rl~kLle~~-~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 184 TPGRLSKLLENG-ALSLSNLKRIVLDWSY 211 (252)
T ss_pred ChHHHHHHHHcC-CCCcccCeEEEEcCCc
Confidence 999999999775 4889999999999887
No 228
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.14 E-value=0.076 Score=45.13 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=32.3
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
+++.||+|+|||..++-.+...+.. +.++++++.. +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~----g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR----GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC----CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999998766545544433 4478888754 3355566666554
No 229
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.10 E-value=0.026 Score=49.91 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil 107 (464)
..+++.|++|+|||..+.. +...+... +.+++++
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~~---g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLLR---GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHhc---CCeEEEE
Confidence 4789999999999986553 44444432 3356666
No 230
>PRK12377 putative replication protein; Provisional
Probab=96.10 E-value=0.022 Score=50.58 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=28.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHH
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~ 119 (464)
..++++.||+|+|||..+.. +...+... +.+++++ +..++..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~~---g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLAK---GRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHc---CCCeEEE-EHHHHHHHHHH
Confidence 36799999999999986443 44444432 3345554 44455554433
No 231
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.07 E-value=0.0064 Score=48.82 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=26.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
+..+++.||+|+|||..... ++..+... ...++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~---~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP---GGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC---CCCEEEECCEEccc
Confidence 56789999999999986443 22222211 12477777765443
No 232
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.07 E-value=0.014 Score=49.15 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=27.2
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 012427 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q 116 (464)
+.+++++++.||+|+|||..+...+.+.+.. +.+++++. ..+|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~----g~~v~f~~-~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK----GYSVLFIT-ASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEE-HHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC----CcceeEee-cCceecc
Confidence 3457899999999999998866544444442 33566664 3345544
No 233
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.05 E-value=0.05 Score=60.16 Aligned_cols=69 Identities=22% Similarity=0.173 Sum_probs=53.6
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
+++-|.+++. ..++++++.|..|||||.+.+--++..+..+ ..-.++|+||=|+..+..+.+.+.....
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 5778988854 2478999999999999999777777766654 2234699999999999888888876543
No 234
>PRK14974 cell division protein FtsY; Provisional
Probab=96.00 E-value=0.091 Score=48.87 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=28.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc---HHHHHHHHHHHH
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT---RDLALQVKDVFA 122 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~---~~L~~q~~~~~~ 122 (464)
.-+++.|++|+|||.+....+ ..+.. .+.+++++..- ..-.+|+.....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~---~g~~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK---NGFSVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH---cCCeEEEecCCcCcHHHHHHHHHHHH
Confidence 457889999999998755433 33333 23366666532 333445443333
No 235
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.96 E-value=0.041 Score=47.07 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=34.7
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc---cHHHHHHHHHHHHHhccccCceEEEeecC
Q 012427 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP---TRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P---~~~L~~q~~~~~~~~~~~~~~~v~~~~g~ 138 (464)
-+++.||||+|||.+..-.+.....+ +.++.+++- +.. ..+.++.++..+++++......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~----~~~v~lis~D~~R~g----a~eQL~~~a~~l~vp~~~~~~~ 65 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK----GKKVALISADTYRIG----AVEQLKTYAEILGVPFYVARTE 65 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEEESTSSTH----HHHHHHHHHHHHTEEEEESSTT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc----cccceeecCCCCCcc----HHHHHHHHHHHhccccchhhcc
Confidence 36889999999999876555444433 335666652 222 2334444545457776554433
No 236
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.015 Score=56.26 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.1
Q ss_pred CEEEECCCCchhHHHhHH
Q 012427 71 DLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~ 88 (464)
.+++.||.|+|||.++-.
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999987554
No 237
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.93 E-value=0.064 Score=55.32 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=23.5
Q ss_pred cchhhHHhHHhhhCCCCCC---CCE-EEECCCCchhHHHhHH
Q 012427 51 LFPVQVAVWQETIGPGLFE---RDL-CINSPTGSGKTLSYAL 88 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~---~~~-li~~~tG~GKT~~~~~ 88 (464)
-|.-|.+.+..++.....+ .++ ++.|+||+|||.+.-.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYS 800 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHH
Confidence 3555655555444433222 344 5999999999988554
No 238
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.93 E-value=0.097 Score=50.93 Aligned_cols=79 Identities=16% Similarity=0.037 Sum_probs=58.5
Q ss_pred ccchhhHHhHHhhhCCCCCC------CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 012427 50 SLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~------~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
.+-|||.-.+.+++...-.+ +.+++..|=+-|||..+...++..+......+..+.|++|+.+.+.+....++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 78999999988877332222 347899999999998766445544444445677899999999999988888887
Q ss_pred hcccc
Q 012427 124 IAPAV 128 (464)
Q Consensus 124 ~~~~~ 128 (464)
.+...
T Consensus 141 mv~~~ 145 (546)
T COG4626 141 MVKRD 145 (546)
T ss_pred HHHhC
Confidence 76543
No 239
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.90 E-value=0.17 Score=41.64 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=24.5
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
+++.|++|+|||..+...+..... .+.+++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~----~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT----KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh----cCCEEEEEECCcch
Confidence 578999999999875543333322 24467777655443
No 240
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.89 E-value=0.015 Score=49.96 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.8
Q ss_pred CCEEEECCCCchhHHHhH
Q 012427 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.+++++||+|+|||..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 579999999999998544
No 241
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.86 E-value=0.048 Score=60.39 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=44.4
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHh-hccCCccEEEEcccHHHHHHH
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~-~~~~~~~~lil~P~~~L~~q~ 117 (464)
.|++.|++++..++.. .++-+++.|..|+|||.+.- .++..+.. ....+.+++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFR-AVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHH-HHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 7999999998887641 24678999999999998732 23332221 112345788899997766554
No 242
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.04 Score=51.82 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=39.9
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchh
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~ 142 (464)
.+..+++.||||+|||.+....+....... +..++.+++. ...-.--.+.++.++...++++..........
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~--G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~ 207 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF--GASKVALLTT-DSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ 207 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEec-ccccccHHHHHHHHHHHcCCceEecCCcccHH
Confidence 467899999999999998665444433321 1124555542 22111123344445455567766655554443
No 243
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.80 E-value=0.042 Score=49.08 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=26.2
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHhh---ccCCccEEEEcccHHHH
Q 012427 72 LCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLA 114 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~~~l~~~~~~---~~~~~~~lil~P~~~L~ 114 (464)
.++-||||+||+- ++..+... .+...+|++++|.+...
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCcccCCCCceEEECCCCCCC
Confidence 6789999999996 33333332 13455899999987653
No 244
>PRK05642 DNA replication initiation factor; Validated
Probab=95.77 E-value=0.073 Score=47.09 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=23.1
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
..++++||+|+|||.... ++...+.. .+.+++++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~---~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQ---RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh---CCCcEEEeeH
Confidence 568899999999997533 33333332 2346777664
No 245
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.74 E-value=0.045 Score=52.92 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=24.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
++.+++.+|||+|||.+....+....... .+.++.+++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEE
Confidence 45789999999999987664444333111 233566664
No 246
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.73 E-value=0.089 Score=51.38 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=29.9
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHH
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 121 (464)
..+++.|++|+|||... -++...+... ..+.+++++++ .++..++...+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~-~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN-FSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh-CCCCeEEEEEH-HHHHHHHHHHH
Confidence 45889999999999653 4445444432 23446777766 34554444443
No 247
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.71 E-value=0.031 Score=50.50 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 012427 69 ERDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~ 88 (464)
..++++.||+|+|||..+-.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 36789999999999987543
No 248
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.66 E-value=0.083 Score=51.89 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=26.9
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~ 117 (464)
..+++.||+|+|||..... +...+... ..+.+++++.. ..+..++
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~-~~~~~v~yi~~-~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEK-NPNAKVVYVTS-EKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEEEH-HHHHHHH
Confidence 4589999999999986443 44444332 12445666644 3444433
No 249
>PRK06893 DNA replication initiation factor; Validated
Probab=95.65 E-value=0.074 Score=46.91 Aligned_cols=36 Identities=14% Similarity=-0.005 Sum_probs=22.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
..++++||+|+|||..... +...+... +.++.++.-
T Consensus 40 ~~l~l~G~~G~GKThL~~a-i~~~~~~~---~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKA-VSNHYLLN---QRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc---CCCeEEeeH
Confidence 4479999999999976443 33333322 235666554
No 250
>PRK09183 transposase/IS protein; Provisional
Probab=95.62 E-value=0.31 Score=43.84 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=41.3
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCC
Q 012427 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (464)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~ 101 (464)
.+++...++..++++......+....| +..+.++++.||+|+|||..+...+..... .+
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-----------------i~~~~~v~l~Gp~GtGKThLa~al~~~a~~----~G 130 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-----------------IERNENIVLLGPSGVGKTHLAIALGYEAVR----AG 130 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-----------------hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH----cC
Confidence 344555555555555555555443221 224788999999999999865543333222 23
Q ss_pred ccEEEEcccHHHHHH
Q 012427 102 LRALVVLPTRDLALQ 116 (464)
Q Consensus 102 ~~~lil~P~~~L~~q 116 (464)
.+++++.. .++..+
T Consensus 131 ~~v~~~~~-~~l~~~ 144 (259)
T PRK09183 131 IKVRFTTA-ADLLLQ 144 (259)
T ss_pred CeEEEEeH-HHHHHH
Confidence 46776653 344433
No 251
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.025 Score=55.26 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 012427 69 ERDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~ 88 (464)
.+..++.||.|+|||.++.+
T Consensus 35 ~ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARI 54 (491)
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 35689999999999987554
No 252
>PRK08727 hypothetical protein; Validated
Probab=95.56 E-value=0.07 Score=47.19 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=22.6
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
..+++.||+|+|||-.... +...+... +.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a-~~~~~~~~---~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA-LCAAAEQA---GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc---CCcEEEEe
Confidence 4589999999999975332 33333332 34677765
No 253
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.074 Score=50.04 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=23.5
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+.+.+.||||+|||.+....+... .. .+.++.+++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L-~~---~GkkVglI~ 276 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQF-HG---KKKTVGFIT 276 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH-HH---cCCcEEEEe
Confidence 568899999999998766544433 22 233566665
No 254
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.52 E-value=0.059 Score=52.62 Aligned_cols=91 Identities=20% Similarity=0.180 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHCCCCccch----hhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHh--hccCCccEEEE
Q 012427 34 CLDPRLKVALQNMGISSLFP----VQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN--RAVRCLRALVV 107 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~----~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~--~~~~~~~~lil 107 (464)
+-++.++.+|++.--..++. +|++- +.|+. ...++-++++|..|||||.+++--....+.. +...+..|||+
T Consensus 189 ~~dEvL~~~Lek~ss~~mrdIV~TIQkEQ-neIIR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl 266 (747)
T COG3973 189 GRDEVLQRVLEKNSSAKMRDIVETIQKEQ-NEIIR-FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVL 266 (747)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhhHhH-HHHHh-ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEE
Confidence 34566777787754334443 34332 22221 2235668999999999999866443333322 22333459999
Q ss_pred cccHHHHHHHHHHHHHhcc
Q 012427 108 LPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~ 126 (464)
.|++....-+...+-+++.
T Consensus 267 ~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 267 GPNRVFLEYISRVLPELGE 285 (747)
T ss_pred cCcHHHHHHHHHhchhhcc
Confidence 9999987776666666543
No 255
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.51 E-value=0.088 Score=59.22 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=44.8
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHh-hccCCccEEEEcccHHHHHHH
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~-~~~~~~~~lil~P~~~L~~q~ 117 (464)
.|++.|++++..++.. .++-+++.|..|+|||.+. -.++..+.. ....+.+++.++||-.-+.++
T Consensus 967 ~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 7999999998887741 1356899999999999873 334433332 112345688899997766544
No 256
>CHL00181 cbbX CbbX; Provisional
Probab=95.49 E-value=0.058 Score=49.23 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.1
Q ss_pred CCCEEEECCCCchhHHHhHHH
Q 012427 69 ERDLCINSPTGSGKTLSYALP 89 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~ 89 (464)
+.++++.||+|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999876543
No 257
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.47 E-value=0.072 Score=55.16 Aligned_cols=83 Identities=12% Similarity=0.224 Sum_probs=69.5
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-ccccCCCCCCCeEE
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~~~Gidip~~~~vi 408 (464)
.+.++++.+|+..-|...++.+++.. ..++.+..++|+++..+|.+.++...+|+.+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 46689999999999998888887643 33588999999999999999999999999999999975 45667888898888
Q ss_pred EecCC
Q 012427 409 NYDKP 413 (464)
Q Consensus 409 ~~~~~ 413 (464)
+....
T Consensus 389 IDE~H 393 (681)
T PRK10917 389 IDEQH 393 (681)
T ss_pred Eechh
Confidence 76543
No 258
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.43 E-value=0.078 Score=47.83 Aligned_cols=44 Identities=16% Similarity=0.025 Sum_probs=25.6
Q ss_pred HHHHCCCCccchhhHH-hHHhhhCC--CCCCCCEEEECCCCchhHHH
Q 012427 42 ALQNMGISSLFPVQVA-VWQETIGP--GLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 42 ~~~~~~~~~l~~~Q~~-~~~~i~~~--~~~~~~~li~~~tG~GKT~~ 85 (464)
.-++..+.+++.-|.- .+..++.. -.+..++++.|+||.|||..
T Consensus 31 i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~I 77 (302)
T PF05621_consen 31 IRADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMI 77 (302)
T ss_pred HhcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHH
Confidence 3344444455555422 23333322 22346899999999999983
No 259
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.42 E-value=0.19 Score=50.33 Aligned_cols=46 Identities=20% Similarity=0.119 Sum_probs=27.0
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~ 118 (464)
..+++.|++|+|||.... ++...+... ..+.+++++.. .+++.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~-AIa~~a~~~-~~g~~V~Yita-eef~~el~ 360 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLH-AIGHYARRL-YPGTRVRYVSS-EEFTNEFI 360 (617)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHHh-CCCCeEEEeeH-HHHHHHHH
Confidence 348999999999997533 344444332 13446776654 34444433
No 260
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.41 E-value=0.11 Score=45.82 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=17.2
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 012427 68 FERDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~ 88 (464)
.+.++++.||+|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 357899999999999986543
No 261
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.41 E-value=0.12 Score=45.70 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=23.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
+.++++.||+|+|||..... +...+.. .+.+++++.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a-~~~~~~~---~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA-ACAELSQ---RGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHh---CCCeEEEEEH
Confidence 46799999999999975443 3333332 2345666644
No 262
>PLN03025 replication factor C subunit; Provisional
Probab=95.39 E-value=0.09 Score=49.06 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=15.9
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
.+++++||+|+|||..+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5689999999999986543
No 263
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.35 E-value=0.12 Score=59.66 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=46.5
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHH
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 120 (464)
.|++-|++++..++. ...+-.++.++.|+|||.+ +-.+++.+.. .+.+++.++||-.-+.++.+.
T Consensus 429 ~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~---~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEI-AQLLLHLASE---QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHH-HHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHH
Confidence 688999999887764 1235689999999999986 3334444443 245799999998766655543
No 264
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.34 E-value=0.096 Score=47.63 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=32.5
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 012427 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (464)
+..+..+++.|++|+|||......+...... .+.++++++--. -..++...+.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g~~vl~iS~E~-~~~~~~~r~~ 79 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ---HGVRVGTISLEE-PVVRTARRLL 79 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cCceEEEEEccc-CHHHHHHHHH
Confidence 3357788999999999998655444444333 144788887432 2334444443
No 265
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.32 E-value=0.13 Score=49.78 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=24.7
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
..+++.||+|+|||.... ++...+... ..+.+++++..
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~-~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILEN-NPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHh-CCCCcEEEEEH
Confidence 457899999999998643 344444432 22446777754
No 266
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.30 E-value=0.074 Score=51.89 Aligned_cols=54 Identities=17% Similarity=0.026 Sum_probs=33.9
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
+..+.-+++.+++|+|||...+..+..... .+.++++++-. +-..|+......+
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~----~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAA----AGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 334566899999999999875544443332 24478998754 3345555555444
No 267
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.038 Score=50.93 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=28.9
Q ss_pred hhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 012427 62 TIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (464)
Q Consensus 62 i~~~~~~~-~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q 116 (464)
.++.+.+. +.++..+|+|+|||+.+-..+-+ ...++|=+.+..|...
T Consensus 237 ~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE--------c~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 237 FFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE--------CGTTFFNVSSSTLTSK 284 (491)
T ss_pred HHhhcccccceeeeeCCCCCcHHHHHHHHHHh--------hcCeEEEechhhhhhh
Confidence 34444445 78999999999999743221211 2256776666666543
No 268
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.094 Score=49.55 Aligned_cols=27 Identities=30% Similarity=0.608 Sum_probs=19.6
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhh
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNR 97 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~ 97 (464)
.|+++.|+||+|||.+.-. +.+.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHhh
Confidence 5699999999999987554 44444443
No 269
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.25 E-value=0.073 Score=55.19 Aligned_cols=88 Identities=11% Similarity=0.292 Sum_probs=64.0
Q ss_pred HHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcC---c-cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccc-cc
Q 012427 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG---E-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM-TR 397 (464)
Q Consensus 323 l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~---~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~-~~ 397 (464)
+..+.-...++++++.+|+...+...++.|++.. . ....+. ||+.++..++++.++++.+|+.+|||+|..+ ..
T Consensus 116 ~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k 194 (1187)
T COG1110 116 LMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSK 194 (1187)
T ss_pred HHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHh
Confidence 3344444567899999999999999998888753 1 223344 9999999999999999999999999999764 32
Q ss_pred cCCC-C--CCCeEEEec
Q 012427 398 GMDV-E--GVNNVVNYD 411 (464)
Q Consensus 398 Gidi-p--~~~~vi~~~ 411 (464)
-+|. . ..+.|+..+
T Consensus 195 ~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 195 RFEELSKLKFDFIFVDD 211 (1187)
T ss_pred hHHHhcccCCCEEEEcc
Confidence 2222 1 245665544
No 270
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.22 E-value=0.097 Score=46.77 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=22.2
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHhhc
Q 012427 71 DLCINSPTGSGKTLSYALPIVQTLSNRA 98 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~~~l~~~~~~~ 98 (464)
=+++.||||||||.+ +.+++..+.+..
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 378999999999987 666888887764
No 271
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.17 E-value=0.17 Score=51.80 Aligned_cols=94 Identities=17% Similarity=0.101 Sum_probs=73.3
Q ss_pred CchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc
Q 012427 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (464)
Q Consensus 317 ~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~ 394 (464)
..|.+....++... .++.+||.++.+..+..+.+.|++.-. +..+..+|++++..+|.+...+..+|+.+|+|+|..
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG-AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 35666666666543 577899999999999999999987431 246888999999999999999999999999999987
Q ss_pred ccccCCCCCCCeEEEecC
Q 012427 395 MTRGMDVEGVNNVVNYDK 412 (464)
Q Consensus 395 ~~~Gidip~~~~vi~~~~ 412 (464)
+- =.=++++..||+.+-
T Consensus 250 Av-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWDD 266 (665)
T ss_pred eE-EeccCCCCEEEEEcC
Confidence 32 234446777777653
No 272
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.16 E-value=0.082 Score=45.29 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012427 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
+..++++.+|+|+|||.+..
T Consensus 47 nmP~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CCCceEeeCCCCCchhhHHH
Confidence 34789999999999998744
No 273
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.16 E-value=0.045 Score=49.93 Aligned_cols=61 Identities=23% Similarity=0.292 Sum_probs=43.1
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 012427 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (464)
Q Consensus 47 ~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~ 115 (464)
.|..+.+-|...+..+.. ...|++++|.||||||.. +..+..--....+++.+=-|.+|.-
T Consensus 154 ~~gt~~~~~a~~L~~av~---~r~NILisGGTGSGKTTl-----LNal~~~i~~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVG---IRCNILISGGTGSGKTTL-----LNALSGFIDSDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHh---hceeEEEeCCCCCCHHHH-----HHHHHhcCCCcccEEEEeehhhhcc
Confidence 466899999888766654 347999999999999984 2222222234448888888877754
No 274
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.14 E-value=0.062 Score=54.36 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.5
Q ss_pred EEEECCCCchhHHHhHH
Q 012427 72 LCINSPTGSGKTLSYAL 88 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~ 88 (464)
.|+.||.|+|||.++..
T Consensus 41 yLf~Gp~GvGKTTlAr~ 57 (647)
T PRK07994 41 YLFSGTRGVGKTTIARL 57 (647)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987554
No 275
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.14 E-value=0.39 Score=48.40 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=47.8
Q ss_pred chhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 012427 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (464)
Q Consensus 52 ~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (464)
.|.-.+-++++++.. +.+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-+.+..+.++..+..
T Consensus 171 ~~~~~~~id~~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f---~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 171 SPRTLREIDRIFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISF---LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred ChhhHHHHHHHHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHh---cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 333333344444333 24556788999999998765544433332 2457999999999999988888877663
No 276
>PHA02533 17 large terminase protein; Provisional
Probab=95.13 E-value=0.096 Score=52.13 Aligned_cols=71 Identities=14% Similarity=0.025 Sum_probs=51.8
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
.|+++|...+..+.. ++-.++..+=..|||.+....++...... .+..+++++|+...+....+.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~--~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFN--KDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 588999998776532 45557888888999998775454444332 345899999999998888887776544
No 277
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.13 E-value=0.099 Score=49.53 Aligned_cols=52 Identities=17% Similarity=0.043 Sum_probs=32.0
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.+.-+++.+++|+|||...+..+..... .+.++++++-.. -..|+......+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~----~g~~VlYvs~EE-s~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK----RGGKVLYVSGEE-SPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh----cCCeEEEEECCc-CHHHHHHHHHHc
Confidence 4566899999999999875543333322 234788887543 244554444443
No 278
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.08 E-value=0.064 Score=49.63 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=41.2
Q ss_pred HHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 41 ~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
..+.+.|. +.+.|.+.+..+.. .++++++.|+||+|||.. +-+++..+... ....+++++-.+.++
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVR---AHRNILVIGGTGSGKTTL-VNAIINEMVIQ-DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHhhhhc-CCCceEEEEcCCCcc
Confidence 33444453 56677777655443 578999999999999954 44455443221 234467777666655
No 279
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.06 E-value=0.13 Score=52.47 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+-+|++||.|+|||.+...
T Consensus 39 HAyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 39 HAYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3468999999999986543
No 280
>PRK08116 hypothetical protein; Validated
Probab=95.05 E-value=0.094 Score=47.39 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=26.1
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~ 117 (464)
..+++.|++|+|||..+.. +...+... +.+++++. ..++..++
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~~---~~~v~~~~-~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIEK---GVPVIFVN-FPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHHc---CCeEEEEE-HHHHHHHH
Confidence 3499999999999986543 44444432 23455554 34444433
No 281
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.03 E-value=0.066 Score=52.77 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.1
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+.++++||.|+|||.++-.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5689999999999987554
No 282
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.96 E-value=0.17 Score=50.27 Aligned_cols=79 Identities=8% Similarity=0.117 Sum_probs=63.5
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEe
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~ 410 (464)
.++++|+.+|.+..+..+++.|++.- +..+..+||+++..+|.+......+|+.+|+|+|...-. ..+.++..||+.
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f--~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF--GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 46689999999999999999998642 256888999999999999999889999999999975322 345577778776
Q ss_pred cC
Q 012427 411 DK 412 (464)
Q Consensus 411 ~~ 412 (464)
..
T Consensus 101 Ee 102 (505)
T TIGR00595 101 EE 102 (505)
T ss_pred CC
Confidence 53
No 283
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.91 E-value=0.19 Score=47.36 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=26.4
Q ss_pred hhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHh
Q 012427 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (464)
Q Consensus 54 ~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~ 96 (464)
.=.++++. +..+..|+..++.+|.|+|||.. +..+...+..
T Consensus 155 ~~~rvID~-l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~ 195 (416)
T PRK09376 155 LSTRIIDL-IAPIGKGQRGLIVAPPKAGKTVL-LQNIANSITT 195 (416)
T ss_pred cceeeeee-ecccccCceEEEeCCCCCChhHH-HHHHHHHHHh
Confidence 33444443 34566789999999999999964 3334444443
No 284
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.099 Score=51.25 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.4
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
..++++||+|+|||..+-.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999987553
No 285
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.85 E-value=0.02 Score=57.34 Aligned_cols=80 Identities=20% Similarity=0.153 Sum_probs=53.0
Q ss_pred ccchhhHHhHHhhhC----CCCCCC--CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 012427 50 SLFPVQVAVWQETIG----PGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~----~~~~~~--~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
.+...|.+++..... .+-.|. .+++-...|.||-.+..-.+++..+++ ..++|+++-+.+|--...+.++.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG---RKrAlW~SVSsDLKfDAERDL~D 340 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG---RKRALWFSVSSDLKFDAERDLRD 340 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc---cceeEEEEeccccccchhhchhh
Confidence 577777777654432 122343 367777788888766555577777765 44799999999998777777777
Q ss_pred hccccCceEE
Q 012427 124 IAPAVGLSVG 133 (464)
Q Consensus 124 ~~~~~~~~v~ 133 (464)
+... +|.|.
T Consensus 341 igA~-~I~V~ 349 (1300)
T KOG1513|consen 341 IGAT-GIAVH 349 (1300)
T ss_pred cCCC-Cccce
Confidence 6443 45443
No 286
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.83 E-value=0.13 Score=49.78 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=42.2
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHH-HHHHHHHHHHHhccccCc
Q 012427 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD-LALQVKDVFAAIAPAVGL 130 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~-L~~q~~~~~~~~~~~~~~ 130 (464)
-.++.|+.|||||.+....++..+... .++.+++++-++.. +.......+.......|+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~ 62 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNSIRDSVFKDIENLLSIEGI 62 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCC
Confidence 357899999999999887777777664 13457888888877 555566777666554444
No 287
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.80 E-value=0.12 Score=51.90 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.5
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+.+++.||.|+|||.++..
T Consensus 38 HAyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARI 56 (702)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4569999999999987553
No 288
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.79 E-value=0.2 Score=51.77 Aligned_cols=79 Identities=6% Similarity=0.134 Sum_probs=64.4
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEe
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~ 410 (464)
.+.++||.++++..+..+.+.|++. .+..+..+||+++..+|.+.......|+.+|+|+|.... -..+.++..||+.
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~--fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvD 265 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRAR--FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVD 265 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHH--hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEE
Confidence 3678999999999999999999873 236788999999999999999889999999999997532 2445677888776
Q ss_pred cC
Q 012427 411 DK 412 (464)
Q Consensus 411 ~~ 412 (464)
..
T Consensus 266 Ee 267 (679)
T PRK05580 266 EE 267 (679)
T ss_pred CC
Confidence 64
No 289
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.77 E-value=0.43 Score=46.58 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=25.0
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
..+++.||+|+|||..+. ++...+.... .+.++++++.
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~-~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNE-PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhC-CCCeEEEEEH
Confidence 468999999999997643 3444444321 2346787765
No 290
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.75 E-value=0.36 Score=44.97 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=29.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~ 118 (464)
.+.++++.||||+|||..+.. +...+... +.+|++++- .++..++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~a-Ia~~l~~~---g~~V~y~t~-~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNC-IAKELLDR---GKSVIYRTA-DELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHHC---CCeEEEEEH-HHHHHHHH
Confidence 358899999999999986543 44444332 335666544 45555443
No 291
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.74 E-value=0.13 Score=47.44 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
++++++.||+|+|||..+.. +...+.. .+.++.++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~A-ia~~l~~---~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA-IANELAK---KGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH---cCCCEEEEE
Confidence 56899999999999987554 3333332 233566553
No 292
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.72 E-value=0.012 Score=48.91 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=25.3
Q ss_pred EEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012427 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 73 li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
++.|+=|.|||.+.-+++...+..+ ..+++|.+|+.+-++.+.+.+...+...
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~---~~~I~vtAP~~~~~~~lf~~~~~~l~~~ 53 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG---KIRILVTAPSPENVQTLFEFAEKGLKAL 53 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------EEEE-SS--S-HHHHHCC-------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc---CceEEEecCCHHHHHHHHHHHHhhcccc
Confidence 4788999999987544443333322 2369999999988777776665554433
No 293
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.72 E-value=0.14 Score=52.52 Aligned_cols=83 Identities=13% Similarity=0.225 Sum_probs=69.3
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccc-cccCCCCCCCeEE
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM-TRGMDVEGVNNVV 408 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~-~~Gidip~~~~vi 408 (464)
.+.++++.+|+..-|...++.+++.. ..++.+..++|+++..+|...++...+|+.+|+|+|..+ ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 46689999999999999888887642 335889999999999999999999999999999999754 5567888888888
Q ss_pred EecCC
Q 012427 409 NYDKP 413 (464)
Q Consensus 409 ~~~~~ 413 (464)
+....
T Consensus 363 IDEaH 367 (630)
T TIGR00643 363 IDEQH 367 (630)
T ss_pred Eechh
Confidence 76544
No 294
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=0.094 Score=49.13 Aligned_cols=37 Identities=22% Similarity=0.093 Sum_probs=24.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
.++.+++.||+|+|||.+..-.+...... +.++.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~----g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ----NRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEe
Confidence 35668899999999998766544433222 33566664
No 295
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.68 E-value=0.016 Score=48.64 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=31.4
Q ss_pred chhHHHhhhcCCcEEEeCchHHHHhhhcCC--CcCCCCccEEEEehhhHhh
Q 012427 162 PEDVLQELQSAVDILVATPGRLMDHINATR--GFTLEHLCYLVVDETDRLL 210 (464)
Q Consensus 162 ~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~--~~~~~~~~~iIvDE~H~~~ 210 (464)
+=...+.....++|||+++..|.+-..+.. .+. .+-.+|||||||.+.
T Consensus 109 PY~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~-~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 109 PYYLARELAKNADIVICNYNYLFDPSIRKSLFGID-LKDNIVIFDEAHNLE 158 (174)
T ss_dssp HHHHHHHCGGG-SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCG
T ss_pred hhHHHHHhcccCCEEEeCHHHHhhHHHHhhhcccc-ccCcEEEEecccchH
Confidence 344556677889999999998876433211 122 234699999999874
No 296
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.57 E-value=0.19 Score=47.53 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=19.2
Q ss_pred hCCCCCCCCEEEECCCCchhHHH
Q 012427 63 IGPGLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 63 ~~~~~~~~~~li~~~tG~GKT~~ 85 (464)
.-.+..|+.+++.+|+|+|||..
T Consensus 162 ~~pig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 162 FAPIGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred EEEeCCCCEEEEECCCCCChhHH
Confidence 33556789999999999999975
No 297
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.55 E-value=0.12 Score=49.89 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012427 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
..++++.||+|+|||.+.-
T Consensus 55 ~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3679999999999998643
No 298
>PF13173 AAA_14: AAA domain
Probab=94.52 E-value=0.39 Score=37.90 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=18.7
Q ss_pred ccEEEEehhhHhhhHhhhhhHHHHHHh
Q 012427 198 LCYLVVDETDRLLREAYQAWLPTVLQL 224 (464)
Q Consensus 198 ~~~iIvDE~H~~~~~~~~~~~~~~~~~ 224 (464)
-.+|++||+|.+ ..|...+..+...
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~ 86 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDN 86 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHh
Confidence 458999999987 3566777777663
No 299
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.52 E-value=0.065 Score=53.11 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.4
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
...++.||.|+|||.++..
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 4469999999999987553
No 300
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.49 E-value=0.42 Score=47.96 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=65.0
Q ss_pred CCCccCCCCCccccccccCCCCC---------CCCCCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCC
Q 012427 9 MPVLPWMRSPVDVSLFEDCPLDH---------LPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPT 78 (464)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~i~~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~t 78 (464)
...-.+.+....+++|++.=+=| +|.+.+++.+.++- |+...+..- +++ .++ .+..++..|=
T Consensus 192 ~~~~~~~~~~~~LEpFQK~iLmHa~yFlasiklp~~a~r~~~~lk~~Fdi~~~s~~---~~~-~fk----qk~tVflVPR 263 (738)
T PHA03368 192 VDVPTYGKTRGTLELFQKMILMHATYFLASVLLGDHAERVERFLRTVFNTPLFSDA---AVR-HFR----QRATVFLVPR 263 (738)
T ss_pred ccccccCCCceeecHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCccccHH---HHH-Hhh----ccceEEEecc
Confidence 33333556666777776543221 23334444455543 444333322 222 233 5677888999
Q ss_pred CchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 79 GSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 79 G~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
-.|||.... +++..+... ..+.++++.+|.+..++..++++...+.
T Consensus 264 R~GKTwivv-~iI~~ll~s-~~Gi~IgytAH~~~ts~~vF~eI~~~le 309 (738)
T PHA03368 264 RHGKTWFLV-PLIALALAT-FRGIKIGYTAHIRKATEPVFEEIGARLR 309 (738)
T ss_pred cCCchhhHH-HHHHHHHHh-CCCCEEEEEcCcHHHHHHHHHHHHHHHh
Confidence 999998655 444444432 2356899999999999999999887655
No 301
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.46 E-value=0.7 Score=47.33 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=49.4
Q ss_pred cchhhHHhHHhhhCCCCCCC-CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012427 51 LFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~~-~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.+.-|.+++..+...+..++ -+++.|+=|-|||.+.=+++....... ...+++|.+|+.+-++.+++.+.+-+...|
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~--~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg 289 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA--GSVRIIVTAPTPANVQTLFEFAGKGLEFLG 289 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc--CCceEEEeCCCHHHHHHHHHHHHHhHHHhC
Confidence 34445555444333222333 688899999999987655442222222 134799999999988888887776656555
Q ss_pred c
Q 012427 130 L 130 (464)
Q Consensus 130 ~ 130 (464)
.
T Consensus 290 ~ 290 (758)
T COG1444 290 Y 290 (758)
T ss_pred C
Confidence 3
No 302
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.41 E-value=0.078 Score=55.12 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.3
Q ss_pred EEEECCCCchhHHHhHH
Q 012427 72 LCINSPTGSGKTLSYAL 88 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~ 88 (464)
.|+.||.|+|||.++-.
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999987543
No 303
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.39 E-value=0.21 Score=51.35 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=32.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc-cHHHHHHHHHHHHHhccccCceEEE
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP-TRDLALQVKDVFAAIAPAVGLSVGL 134 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P-~~~L~~q~~~~~~~~~~~~~~~v~~ 134 (464)
++-+.+.||||+|||.+....+....... +..++.+++- +.-.+ ..+.++.+....++++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~--G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~~ 247 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE--GADQLALLTTDSFRIG--ALEQLRIYGRILGVPVHA 247 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc--CCCeEEEecCcccchH--HHHHHHHHHHhCCCCccc
Confidence 45578999999999987664443332222 1225555543 22211 233344444444655543
No 304
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.35 E-value=0.12 Score=47.54 Aligned_cols=45 Identities=22% Similarity=0.073 Sum_probs=30.6
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
+..|.-+.+.+|+|+|||..++..+.+.... +.+++++..--.+-
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~----g~~v~yId~E~~~~ 96 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALD 96 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEcccchhH
Confidence 3346678899999999998766555544432 44788886554443
No 305
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.34 E-value=0.11 Score=49.84 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=21.8
Q ss_pred HhhhCCCCCCCCEEEECCCCchhHHHhH
Q 012427 60 QETIGPGLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 60 ~~i~~~~~~~~~~li~~~tG~GKT~~~~ 87 (464)
..++..+..++++++.||+|+|||..+-
T Consensus 185 e~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 185 ETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 3445555568999999999999998644
No 306
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.30 E-value=0.11 Score=48.04 Aligned_cols=46 Identities=20% Similarity=0.021 Sum_probs=31.7
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 012427 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~ 115 (464)
+..|.-+.+.+|+|+|||..++..+.+.... +.+++++...-.+-.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~----g~~~vyId~E~~~~~ 97 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKL----GGTVAFIDAEHALDP 97 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCCEEEECccccHHH
Confidence 3345678899999999998766555544432 447899987555443
No 307
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.25 E-value=0.098 Score=49.92 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=18.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHH
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
+.++++.||+|+|||.+.- .++..+.
T Consensus 40 ~~~i~I~G~~GtGKT~l~~-~~~~~l~ 65 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTK-YVMKELE 65 (365)
T ss_pred CCcEEEECCCCCCHHHHHH-HHHHHHH
Confidence 3679999999999998643 3444443
No 308
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.22 E-value=0.16 Score=48.97 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.7
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
...+++||.|+|||.++..
T Consensus 39 ha~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3488999999999987554
No 309
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.21 E-value=0.081 Score=48.01 Aligned_cols=37 Identities=14% Similarity=-0.147 Sum_probs=22.1
Q ss_pred cchhhHHhHHhhhCCCCCC-CCEEEECCCCchhHHHhH
Q 012427 51 LFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~-~~~li~~~tG~GKT~~~~ 87 (464)
+.+.+.+++..+...+..+ ..+++.||+|+|||...-
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3444444544432222233 458899999999998633
No 310
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.19 E-value=0.027 Score=61.73 Aligned_cols=96 Identities=23% Similarity=0.383 Sum_probs=76.8
Q ss_pred CeEEEEecChhhHHHHHHHHhhcCccceeEeeccCccc-----------HHHHHHHHHHHhcCCeeEEEEcccccccCCC
Q 012427 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-----------QSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401 (464)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-----------~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidi 401 (464)
=..++|++....+....+.+++... ..+..+.|.+. ...+.+++..|...++++|++|.++.+|+|+
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~ 370 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFS--NDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV 370 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhc--cCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch
Confidence 3578999999999888888876432 11222333322 3346788999999999999999999999999
Q ss_pred CCCCeEEEecCCCCcchhhhhhhhhhcCC
Q 012427 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (464)
Q Consensus 402 p~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 430 (464)
+.++.++.++.|.....|+|..||+-+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999999987753
No 311
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.18 E-value=0.2 Score=46.06 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=37.4
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
+.+.|...+..+.. .+.+++++|+||+|||.. +-+++..+... ....+++.+=.+.++
T Consensus 117 ~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVL---ARKNILVVGGTGSGKTTL-ANALLAEIAKN-DPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHHhhcc-CCCceEEEECCchhh
Confidence 55556666555443 468999999999999975 34455554432 123467777666665
No 312
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.18 E-value=0.11 Score=47.99 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=38.3
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
.+.+.|.+.+..+.. .+.+++++|+||+|||.. +-+++..+... ....+++.+=.+.+|
T Consensus 128 ~~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTl-l~aL~~~i~~~-~~~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAID---SRLNIVISGGTGSGKTTL-ANAVIAEIVAS-APEDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHHHhcC-CCCceEEEecCCccc
Confidence 366777777665554 468999999999999975 34455544322 123467766666565
No 313
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.18 E-value=0.1 Score=46.35 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=35.6
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.|..+++.||+|+|||..++-.+.+.+.+ +.++++++-. +-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~----ge~~lyvs~e-e~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGIYVALE-EHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc----CCcEEEEEee-CCHHHHHHHHHHh
Confidence 46789999999999998766555555432 4478888743 3455566656554
No 314
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.11 E-value=0.21 Score=57.62 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=43.6
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhH---HHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA---LPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~---~~~l~~~~~~~~~~~~~lil~P~~~L~~q~ 117 (464)
..+++.|+.++..++. ..++-+++.|+.|+|||.+.- -++.+.+.. .+.+++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHH
Confidence 3799999999888764 123557889999999998742 122232222 345788999997665544
No 315
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.09 E-value=0.16 Score=48.22 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=14.7
Q ss_pred CEEEECCCCchhHHHhHH
Q 012427 71 DLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~ 88 (464)
.+++.||.|+|||..+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 368999999999986443
No 316
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.02 E-value=0.12 Score=52.23 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=16.1
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+.+++.||.|+|||.++..
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~ 65 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARI 65 (598)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999987654
No 317
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.98 E-value=0.15 Score=51.66 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.7
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+.+|+.||.|+|||.++..
T Consensus 39 Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4579999999999987553
No 318
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.94 E-value=0.11 Score=45.74 Aligned_cols=53 Identities=21% Similarity=0.128 Sum_probs=35.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.|..+++.|++|+|||..++-.+.+.+.+. +.++++++-.. -.+++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~---ge~vlyvs~ee-~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF---GEKVLYVSFEE-PPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH---T--EEEEESSS--HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc---CCcEEEEEecC-CHHHHHHHHHHc
Confidence 467799999999999988666666666651 23688887432 345566666655
No 319
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.91 E-value=0.31 Score=47.52 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
..+++.||+|+|||.... ++...+... +.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~---~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES---GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCEEEeeH
Confidence 458999999999997644 344444432 346777764
No 320
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.86 E-value=0.52 Score=36.60 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=29.3
Q ss_pred EEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc-----ccHHHHHHHHHHHHHh
Q 012427 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-----PTRDLALQVKDVFAAI 124 (464)
Q Consensus 73 li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~-----P~~~L~~q~~~~~~~~ 124 (464)
-+.|+||+|||.+.-+.+-.... .+.+..-+.... |....+.+..++++.+
T Consensus 57 SfHG~tGtGKn~v~~liA~~ly~-~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~ 112 (127)
T PF06309_consen 57 SFHGWTGTGKNFVSRLIAEHLYK-SGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSW 112 (127)
T ss_pred EeecCCCCcHHHHHHHHHHHHHh-cccCCCceeeecccccCCCchHHHHHHHHHHHH
Confidence 47999999999987764444333 333333344333 5555555444444443
No 321
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.83 E-value=0.3 Score=43.22 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=34.0
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.+.-+++.+++|+|||..+...+...+.+ +.++++++-... ..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ----GKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC----CCEEEEEEcCCC-HHHHHHHHHHC
Confidence 45678999999999998765544444432 447888875433 34455555554
No 322
>PRK09354 recA recombinase A; Provisional
Probab=93.81 E-value=0.17 Score=47.15 Aligned_cols=43 Identities=23% Similarity=0.121 Sum_probs=30.6
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
.|.-+.+.+|+|+|||..++..+.+.... +.+++|+..--.+-
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~----G~~~~yId~E~s~~ 101 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALD 101 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEECCccchH
Confidence 45668899999999998876655554433 44788887655444
No 323
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.81 E-value=0.18 Score=50.17 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=14.9
Q ss_pred CEEEECCCCchhHHHhHH
Q 012427 71 DLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~ 88 (464)
.+++.||.|+|||..+..
T Consensus 40 a~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRL 57 (546)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987554
No 324
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.81 E-value=0.4 Score=51.17 Aligned_cols=83 Identities=11% Similarity=0.256 Sum_probs=68.2
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhc-CccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-ccccCCCCCCCeEE
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~~~Gidip~~~~vi 408 (464)
.+.+++|.+|+...|...++.+++. ...++.+..+++..+..++..+++.+..|+.+|+|+|.. +...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4578999999999999998888763 334578888999999989999999999999999999974 45567888888888
Q ss_pred EecCC
Q 012427 409 NYDKP 413 (464)
Q Consensus 409 ~~~~~ 413 (464)
+....
T Consensus 579 IDEah 583 (926)
T TIGR00580 579 IDEEQ 583 (926)
T ss_pred eeccc
Confidence 76543
No 325
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.81 E-value=0.38 Score=45.71 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=25.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
...++++||+|+|||-..-. +...+... ..+.++++++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~A-ign~~~~~-~~~a~v~y~~se 152 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQA-IGNEALAN-GPNARVVYLTSE 152 (408)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHHHhh-CCCceEEeccHH
Confidence 35689999999999975333 33333332 244467776653
No 326
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.80 E-value=0.29 Score=50.16 Aligned_cols=95 Identities=9% Similarity=0.140 Sum_probs=73.5
Q ss_pred ccCCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEE
Q 012427 314 CESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391 (464)
Q Consensus 314 ~~~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~ 391 (464)
..-..|.+....++... .++.+||.++.+.....+.+.|+.. .+.++..+|+++++.+|.+...+..+|+.+|+|+
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~r--Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKAR--FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHH--hCCChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 34556777766666653 5678999999999998888888763 2378999999999999999999999999999999
Q ss_pred cccccccCCCCCCCeEEEec
Q 012427 392 SDAMTRGMDVEGVNNVVNYD 411 (464)
Q Consensus 392 t~~~~~Gidip~~~~vi~~~ 411 (464)
|..+- -.=++++..||+..
T Consensus 303 tRSAl-F~Pf~~LGLIIvDE 321 (730)
T COG1198 303 TRSAL-FLPFKNLGLIIVDE 321 (730)
T ss_pred echhh-cCchhhccEEEEec
Confidence 98632 22344666776643
No 327
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.76 E-value=0.21 Score=49.44 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+.+++.||+|+|||.++..
T Consensus 37 ha~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARL 55 (504)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3359999999999987553
No 328
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.75 E-value=0.13 Score=51.98 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.4
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+..|+.||.|+|||.++..
T Consensus 39 hayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARI 57 (576)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3468999999999987554
No 329
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.75 E-value=0.68 Score=43.15 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=16.2
Q ss_pred CccEEEEehhhHhhhHhhhhhHHHHH
Q 012427 197 HLCYLVVDETDRLLREAYQAWLPTVL 222 (464)
Q Consensus 197 ~~~~iIvDE~H~~~~~~~~~~~~~~~ 222 (464)
..+++|+||+|.+........+..++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~l 125 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFM 125 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHH
Confidence 45799999999873333333444433
No 330
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.73 E-value=0.28 Score=42.86 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=26.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
.+.-+.+.+++|+|||..++..+.+.... +.+++++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~----g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ----GKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEE
Confidence 45668999999999998766555544332 34688884
No 331
>PRK04195 replication factor C large subunit; Provisional
Probab=93.66 E-value=0.3 Score=48.43 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012427 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 332
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.59 E-value=0.18 Score=52.87 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.1
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 012427 70 RDLCINSPTGSGKTLSYALP 89 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~ 89 (464)
+-+|+.+|.|+|||.++...
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~l 57 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARIL 57 (824)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 34799999999999876543
No 333
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.59 E-value=0.24 Score=48.08 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhH
Q 012427 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.++++.||+|+|||..+-
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999998644
No 334
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.45 E-value=0.28 Score=47.92 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=18.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHH
Q 012427 69 ERDLCINSPTGSGKTLSYALPIV 91 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l 91 (464)
++-+.+.||||+|||.+....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 45688999999999998665443
No 335
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.41 E-value=0.13 Score=49.61 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=28.0
Q ss_pred chhhHHhHHhhhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHHHhh
Q 012427 52 FPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR 97 (464)
Q Consensus 52 ~~~Q~~~~~~i~~~~~~~-~~~li~~~tG~GKT~~~~~~~l~~~~~~ 97 (464)
.+.|...+..++. .. .=+++.||||||||.+ +.+++..+...
T Consensus 243 ~~~~~~~~~~~~~---~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLN---RPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHh---CCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 5666666665554 22 3478899999999987 44566555543
No 336
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.40 E-value=0.4 Score=48.32 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=15.6
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+..|+.||.|+|||.++-.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999987554
No 337
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.36 E-value=0.36 Score=39.91 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.4
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+..++.||.|+||+..+..
T Consensus 20 ha~L~~G~~g~gk~~~a~~ 38 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALA 38 (162)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 4579999999999986544
No 338
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.36 E-value=0.097 Score=52.59 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=16.0
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
..+|+.+|.|+|||.++..
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999987654
No 339
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.54 Score=42.61 Aligned_cols=129 Identities=18% Similarity=0.218 Sum_probs=64.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHh-hccCCcc-EEEEcc-----------cHHHHHHHHHHHHHhccccCceEEE
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLR-ALVVLP-----------TRDLALQVKDVFAAIAPAVGLSVGL 134 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~-~~~~~~~-~lil~P-----------~~~L~~q~~~~~~~~~~~~~~~v~~ 134 (464)
.++-+++.||+|+|||.. .-++.+.+.- ...+..+ .+|=.. +-.|+.++.+.++++...-|.=|.+
T Consensus 176 ~NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 456689999999999964 3444444421 1122223 333333 3345666667777776665555555
Q ss_pred eecCCchhHHHHHh-hcccccccccc--CCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012427 135 AVGQSSIADEISEL-IKRPKLEAGIC--YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 135 ~~g~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
+...-......+.. .-+.....++. -......+++.+.++|+|-+...+. +.++...||-|+-
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~-----------~siD~AfVDRADi 320 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLT-----------DSIDVAFVDRADI 320 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchH-----------HHHHHHhhhHhhh
Confidence 55443222221111 11111001110 0111234666777788776644432 2355677777773
No 340
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.31 E-value=1 Score=41.89 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=28.1
Q ss_pred cchhhHHhHHhhhCCCCCC-CCEEEECCCCchhHHHhHH
Q 012427 51 LFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~-~~~li~~~tG~GKT~~~~~ 88 (464)
++|||...|+.+.....+- ...++.||.|+|||..+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 3688888888877553322 3578999999999987554
No 341
>PRK05973 replicative DNA helicase; Provisional
Probab=93.26 E-value=0.3 Score=42.95 Aligned_cols=85 Identities=18% Similarity=0.106 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHCCCCccchhhHHh-----HHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 35 LDPRLKVALQNMGISSLFPVQVAV-----WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~-----~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
|++.+-+.=.+-||..-.-....+ ...+..-+..|.-+++.|++|+|||..++-.+.+...+ +.+++|++-
T Consensus 25 ~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~----Ge~vlyfSl 100 (237)
T PRK05973 25 LHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS----GRTGVFFTL 100 (237)
T ss_pred HHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEEE
Confidence 555555544555764322222111 11223445556778999999999998766555544432 446888864
Q ss_pred cHHHHHHHHHHHHHh
Q 012427 110 TRDLALQVKDVFAAI 124 (464)
Q Consensus 110 ~~~L~~q~~~~~~~~ 124 (464)
--. ..|+.+.+..+
T Consensus 101 Ees-~~~i~~R~~s~ 114 (237)
T PRK05973 101 EYT-EQDVRDRLRAL 114 (237)
T ss_pred eCC-HHHHHHHHHHc
Confidence 322 44556666555
No 342
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.26 E-value=0.22 Score=50.06 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=14.7
Q ss_pred EEEECCCCchhHHHhHH
Q 012427 72 LCINSPTGSGKTLSYAL 88 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~ 88 (464)
.++.||.|+|||.++..
T Consensus 38 ~Lf~Gp~G~GKTt~A~~ 54 (584)
T PRK14952 38 YLFSGPRGCGKTSSARI 54 (584)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987654
No 343
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.18 E-value=0.32 Score=53.13 Aligned_cols=81 Identities=11% Similarity=0.224 Sum_probs=65.7
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhc-CccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-ccccCCCCCCCeEE
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~~~Gidip~~~~vi 408 (464)
.+.+++|.+|++..|...++.+++. +..++.+..+++..+..++..+++....|+.+|+|+|.. +...+++.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999999888753 334577888999999999999999999999999999974 44456677788877
Q ss_pred Eec
Q 012427 409 NYD 411 (464)
Q Consensus 409 ~~~ 411 (464)
+..
T Consensus 728 IDE 730 (1147)
T PRK10689 728 VDE 730 (1147)
T ss_pred Eec
Confidence 654
No 344
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.16 E-value=0.3 Score=44.00 Aligned_cols=37 Identities=24% Similarity=0.139 Sum_probs=27.0
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
.+.-+++.|++|+|||..++-.+.+.+. .+.++++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~----~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS----RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----CCCcEEEEE
Confidence 4567899999999999876654454443 344789887
No 345
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=93.16 E-value=0.15 Score=51.23 Aligned_cols=70 Identities=24% Similarity=0.055 Sum_probs=51.8
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc--cCCccEEEEcccHHHHHHHHHHHHH
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
-+-+-|..|++..+. .+-.++++|+|+|||++.+.++-..+.+.. ....+++++|-|...++|....+-.
T Consensus 378 ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 455568888777664 566899999999999998875555444431 2234699999999999997776654
No 346
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.12 E-value=0.38 Score=46.58 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=23.5
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
..++++|++|+|||.++...+. .+.. .+.++++++
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~-~L~~---~g~kV~lV~ 130 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR-YFKK---KGLKVGLVA 130 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHH---cCCeEEEec
Confidence 4578899999999988665443 3332 234666665
No 347
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.11 E-value=0.39 Score=48.38 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.4
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+-+|++||.|+|||.++..
T Consensus 39 HA~LFtGP~GvGKTTLAri 57 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRI 57 (700)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3469999999999987554
No 348
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.11 E-value=0.28 Score=41.63 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=25.2
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHH
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~ 85 (464)
.+.+.|...+....+ .+..+++.+|||+|||..
T Consensus 9 ~~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVE---ARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHH
Confidence 466667766655444 578999999999999975
No 349
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.00 E-value=0.44 Score=45.50 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=23.1
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
..+++.||+|+|||.++.-.+...... .+.++.+++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~---~G~~V~Lit 259 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH---MGKSVSLYT 259 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh---cCCeEEEec
Confidence 347889999999999866544433222 233565554
No 350
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.96 E-value=0.58 Score=46.85 Aligned_cols=93 Identities=17% Similarity=0.315 Sum_probs=70.6
Q ss_pred CCchHHHHHHHHHhh-CCCeEEEEecChhhHH----HHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEE
Q 012427 316 SKLKPLYLVALLQSL-GEEKCIVFTSSVESTH----RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (464)
Q Consensus 316 ~~~~~~~l~~~l~~~-~~~~~lVf~~s~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi 390 (464)
...-..++..++... .+.++....|+---|+ .+.+.|...+ +.+..+.|.+....|+++++...+|+.+++|
T Consensus 294 SGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~---i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivV 370 (677)
T COG1200 294 SGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLG---IRVALLTGSLKGKARKEILEQLASGEIDIVV 370 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcC---CeEEEeecccchhHHHHHHHHHhCCCCCEEE
Confidence 333444455555443 5668899999965554 4444444444 8899999999999999999999999999999
Q ss_pred Ecccc-cccCCCCCCCeEEEec
Q 012427 391 SSDAM-TRGMDVEGVNNVVNYD 411 (464)
Q Consensus 391 ~t~~~-~~Gidip~~~~vi~~~ 411 (464)
+|-++ ...+++.++..||+..
T Consensus 371 GTHALiQd~V~F~~LgLVIiDE 392 (677)
T COG1200 371 GTHALIQDKVEFHNLGLVIIDE 392 (677)
T ss_pred EcchhhhcceeecceeEEEEec
Confidence 99875 7889999888887653
No 351
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.93 E-value=0.21 Score=45.81 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=14.7
Q ss_pred CCEEEECCCCchhHHHh
Q 012427 70 RDLCINSPTGSGKTLSY 86 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~ 86 (464)
.++++|+|+|+|||..+
T Consensus 163 pSmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLA 179 (554)
T ss_pred CceEEecCCCCchHHHH
Confidence 57899999999999753
No 352
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.92 E-value=0.41 Score=48.50 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=15.4
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+-++++||.|+|||.++..
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRI 57 (618)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3369999999999987554
No 353
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.80 E-value=0.11 Score=51.91 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.8
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+..++.||.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999987553
No 354
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.78 E-value=0.28 Score=49.01 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.8
Q ss_pred CEEEECCCCchhHHHhHH
Q 012427 71 DLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~ 88 (464)
-.++.||.|+|||.++-.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999986543
No 355
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.76 E-value=0.44 Score=45.73 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=35.9
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeec
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g 137 (464)
.+..+.+.||||+|||.+....+...+.... ...-.++.+.+...+ ..+.+..++...|+++.....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~ 256 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKD 256 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCC
Confidence 3566899999999999876543433333221 111244445543332 233344555555666654443
No 356
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.73 E-value=0.55 Score=41.79 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=18.0
Q ss_pred CCCCCCCEEEECCCCchhHHH
Q 012427 65 PGLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 65 ~~~~~~~~li~~~tG~GKT~~ 85 (464)
.+..|+.+++.+|.|+|||..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH
Confidence 455789999999999999963
No 357
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.72 E-value=0.25 Score=50.11 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.7
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
...|++||.|+|||.++..
T Consensus 39 ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 4488999999999987554
No 358
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.67 E-value=0.42 Score=48.58 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.4
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+..|+.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI 57 (585)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4469999999999987554
No 359
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.66 E-value=1.3 Score=41.32 Aligned_cols=38 Identities=26% Similarity=0.537 Sum_probs=29.4
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHH
Q 012427 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~ 88 (464)
++|||...|+.++..-.-....++.||.|+|||..+..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 57899999999887532235588999999999976543
No 360
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.63 E-value=0.094 Score=47.31 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=25.1
Q ss_pred hhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 012427 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 53 ~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~ 87 (464)
+..++....+...+..+.++++.||+|+|||..+.
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 33444444455555568999999999999998654
No 361
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.49 E-value=0.15 Score=47.56 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=26.3
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
.+.+++++|+||+|||.. +-+++..+. ...+++.+=-+.++
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip----~~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIP----AIERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCC----CCCeEEEecCCCcc
Confidence 578999999999999975 333444332 23466665444443
No 362
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.47 E-value=0.83 Score=41.38 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=23.4
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+-+++.+|+|+|||.+..-.+... .. .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~---~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK---QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh---cCCEEEEEe
Confidence 457788999999998766544333 22 234677775
No 363
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.43 E-value=0.43 Score=42.49 Aligned_cols=45 Identities=13% Similarity=-0.103 Sum_probs=31.2
Q ss_pred hhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 62 i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
++.-+..|.-+++.|++|+|||...+-.+...+... +.++++++.
T Consensus 6 ~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~---g~~vly~s~ 50 (242)
T cd00984 6 LTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFSL 50 (242)
T ss_pred hhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCceEEEeC
Confidence 333444577889999999999987665555554441 447899973
No 364
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.38 E-value=1 Score=44.01 Aligned_cols=104 Identities=13% Similarity=0.201 Sum_probs=76.4
Q ss_pred CCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhcccccc
Q 012427 76 SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155 (464)
Q Consensus 76 ~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 155 (464)
.-.++||+..-++++.+.+..+ -.+.+||.+-+.+-+.|+++.+..+ .++++..++|..+...+
T Consensus 364 elvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~---~~i~v~vIh~e~~~~qr----------- 427 (593)
T KOG0344|consen 364 ELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIY---DNINVDVIHGERSQKQR----------- 427 (593)
T ss_pred hheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhc---cCcceeeEecccchhHH-----------
Confidence 3357888888888888888776 3567999999999999999988722 37999999999766544
Q ss_pred ccccCCchhHHHhhh-cCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh
Q 012427 156 AGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (464)
Q Consensus 156 ~~~~~~~~~~~~~~~-~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~ 209 (464)
++....+. ....++||| +++.+ +.++.++.+||-++.-..
T Consensus 428 -------de~~~~FR~g~IwvLicT-----dll~R--GiDf~gvn~VInyD~p~s 468 (593)
T KOG0344|consen 428 -------DETMERFRIGKIWVLICT-----DLLAR--GIDFKGVNLVINYDFPQS 468 (593)
T ss_pred -------HHHHHHHhccCeeEEEeh-----hhhhc--cccccCcceEEecCCCch
Confidence 22223333 336899999 34444 377889999999887743
No 365
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.32 E-value=0.13 Score=51.60 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=52.9
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH-HHHHHhccc
Q 012427 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK-DVFAAIAPA 127 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~-~~~~~~~~~ 127 (464)
...+|||.+.++.+...- =+.+.+..++-+|||.+.+-.+...+... ...+|++.||...++++. ..+..+...
T Consensus 15 ~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~---P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQD---PGPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeC---CCCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 367889999877765422 26789999999999997555555444443 235999999999999877 446665443
No 366
>PRK04328 hypothetical protein; Provisional
Probab=92.29 E-value=0.3 Score=43.68 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=33.6
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.|..+++.+++|+|||..++-.+.+.+.+ +.++++++-. +-..++.+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~----ge~~lyis~e-e~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGVYVALE-EHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEEee-CCHHHHHHHHHHc
Confidence 46778999999999998765545554443 4468888632 2334455555554
No 367
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.27 E-value=0.53 Score=46.32 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=25.0
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
..++.+.+.||+|+|||.+....+....... .+.++.++.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~--~gkkVaLId 387 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQH--APRDVALVT 387 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCceEEEe
Confidence 3567788999999999987654333333322 123566554
No 368
>PHA02244 ATPase-like protein
Probab=92.25 E-value=0.12 Score=48.29 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=19.8
Q ss_pred hhCCCCCCCCEEEECCCCchhHHHhH
Q 012427 62 TIGPGLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 62 i~~~~~~~~~~li~~~tG~GKT~~~~ 87 (464)
+...+..+.++++.||||+|||..+.
T Consensus 112 i~r~l~~~~PVLL~GppGtGKTtLA~ 137 (383)
T PHA02244 112 IAKIVNANIPVFLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 34444467899999999999997543
No 369
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=92.17 E-value=0.28 Score=53.91 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=47.1
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhh-ccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.++++++.|..|||||++...-++..+... +..-..+|+||-|+.-+..+...+..-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 468999999999999999888788888875 245567999999999888888777654
No 370
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.10 E-value=1.2 Score=41.34 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=31.6
Q ss_pred CCccchhhHHhHHhhhCCCCCCC---CEEEECCCCchhHHHhH
Q 012427 48 ISSLFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 48 ~~~l~~~Q~~~~~~i~~~~~~~~---~~li~~~tG~GKT~~~~ 87 (464)
+..++|||..+++.+...+.+++ -.++.||.|+||+..+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 35788999999988876655553 48899999999998644
No 371
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.10 E-value=0.18 Score=47.09 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=27.8
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
.++++++.||||+|||.. +-+++..+. ...+++.+=.+.++
T Consensus 161 ~~~nilI~G~tGSGKTTl-l~aLl~~i~----~~~rivtiEd~~El 201 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTM-SKTLISAIP----PQERLITIEDTLEL 201 (344)
T ss_pred cCCeEEEECCCCccHHHH-HHHHHcccC----CCCCEEEECCCccc
Confidence 478999999999999975 333443332 33467776666655
No 372
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.07 E-value=0.33 Score=43.79 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=36.3
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
..+..+++.+++|+|||.-++-.+.+.+. .+.++++++-. +...++.+.+..+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~----~ge~vlyvs~~-e~~~~l~~~~~~~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAR----EGEPVLYVSTE-ESPEELLENARSFGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHh----cCCcEEEEEec-CCHHHHHHHHHHcCC
Confidence 35788999999999999875544444443 35578888754 334455666655433
No 373
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=92.01 E-value=0.39 Score=49.89 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=56.7
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
.|++-|+++.... ...++|.++.|+|||.+..--+.+.+.........++.+|=|+..+.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~------~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP------DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC------CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788899885542 5778999999999999977767777766544555699999999999999999888875
No 374
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.97 E-value=0.29 Score=45.06 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=46.8
Q ss_pred HHCCCCccchhhHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 44 QNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 44 ~~~~~~~l~~~Q~~~~~~i~~~~~~~--~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
+-+|+..-+..|.-|+..++. . .=+.+.+..|+|||+.++.+.+++....+ ...++++-=|+..+.
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld----~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-~y~KiiVtRp~vpvG 289 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLD----DDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-RYRKIIVTRPTVPVG 289 (436)
T ss_pred hhhccCcccHHHHHHHHHhcC----CCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-hhceEEEecCCcCcc
Confidence 447876666666666555443 3 34788999999999999999888887764 334677776776654
No 375
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.92 E-value=0.22 Score=50.10 Aligned_cols=165 Identities=17% Similarity=0.181 Sum_probs=85.9
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE-cccHHHHHHHHHHHHHhc
Q 012427 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 47 ~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil-~P~~~L~~q~~~~~~~~~ 125 (464)
.|.+|+.--...++.+-=.+..|+.+.+.||.|+|||.++. ++.++.... ..++++= +|-+++-.++.+ +.-
T Consensus 472 sFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTias--LL~rfY~Pt--sG~IllDG~~i~~~~~~~lr---~~I 544 (716)
T KOG0058|consen 472 SFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIAS--LLLRFYDPT--SGRILLDGVPISDINHKYLR---RKI 544 (716)
T ss_pred eeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHH--HHHHhcCCC--CCeEEECCeehhhcCHHHHH---HHe
Confidence 46666655445555554445568999999999999998644 666666542 2233322 455555444333 221
Q ss_pred cccCc---------eEEEeecCCchhH-HHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCC----
Q 012427 126 PAVGL---------SVGLAVGQSSIAD-EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR---- 191 (464)
Q Consensus 126 ~~~~~---------~v~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~---- 191 (464)
...+- .-.+.||..+..+ ++..--+ .-+.-+....+..+++-.|+.-+..+.--.+..
T Consensus 545 g~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk--------~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 545 GLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAK--------MANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIA 616 (716)
T ss_pred eeeeccceeecccHHHHHhcCCCCCCHHHHHHHHH--------HhChHHHHHhCccccccccCCccccccchHHHHHHHH
Confidence 11111 1112223222111 1110000 001223445556666666666543322111000
Q ss_pred CcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhcc
Q 012427 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (464)
Q Consensus 192 ~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~ 226 (464)
.-.+.+..++|+|||-..++......+.+.+....
T Consensus 617 RALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~ 651 (716)
T KOG0058|consen 617 RALLRNPRVLILDEATSALDAESEYLVQEALDRLM 651 (716)
T ss_pred HHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh
Confidence 01256788999999999998888877777776543
No 376
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=0.13 Score=46.37 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012427 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
..|+++.+|||||||+.+-
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 4679999999999998543
No 377
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.81 E-value=0.11 Score=45.94 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=12.3
Q ss_pred EEEECCCCchhHHH
Q 012427 72 LCINSPTGSGKTLS 85 (464)
Q Consensus 72 ~li~~~tG~GKT~~ 85 (464)
+++.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999985
No 378
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.73 E-value=1.3 Score=37.67 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.6
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
...++.||+|+|||..+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~ 33 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALA 33 (188)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5589999999999986443
No 379
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.71 E-value=1.8 Score=40.20 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=23.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+.-+.+.||+|+|||.+....+.. +.. .+.+++++.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~-l~~---~g~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHK-YKA---QGKKVLLAA 149 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HHh---cCCeEEEEe
Confidence 355788999999999875543332 222 234677764
No 380
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.66 E-value=0.7 Score=51.22 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=45.7
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
.+++++.++.|||||.+...-++..+..+. ...++++||-|+.-+.++.+.+.....
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~-~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGV-PPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCC-CCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 478999999999999987777776666543 345799999999999888888776554
No 381
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.64 E-value=0.44 Score=42.01 Aligned_cols=52 Identities=10% Similarity=0.006 Sum_probs=33.0
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.+..+++.+++|+|||..++-.+...+. ++.++++++... -..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g~~~~yi~~e~-~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ----NGYSVSYVSTQL-TTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh----CCCcEEEEeCCC-CHHHHHHHHHHh
Confidence 4677899999999999875443443332 245788888443 334555555444
No 382
>PRK10867 signal recognition particle protein; Provisional
Probab=91.57 E-value=2 Score=41.60 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=33.0
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc--ccHHH-HHHHHHHHHHhccccCceEEEe
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDL-ALQVKDVFAAIAPAVGLSVGLA 135 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~--P~~~L-~~q~~~~~~~~~~~~~~~v~~~ 135 (464)
.-+++++++|+|||.++.-.+...... .+.++++++ +.+.- .+|+ +.++...++++...
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~---~G~kV~lV~~D~~R~aa~eQL----~~~a~~~gv~v~~~ 162 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKK---KKKKVLLVAADVYRPAAIEQL----KTLGEQIGVPVFPS 162 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh---cCCcEEEEEccccchHHHHHH----HHHHhhcCCeEEec
Confidence 347889999999998866544433322 133676664 23332 2343 33344446665443
No 383
>PF12846 AAA_10: AAA-like domain
Probab=91.54 E-value=0.26 Score=45.43 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=27.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
+.++++.|+||+|||..... ++...... +..++++=|.-+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~-l~~~~~~~---g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN-LLEQLIRR---GPRVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHc---CCCEEEEcCCchH
Confidence 35789999999999987664 44444332 3467777665443
No 384
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.41 E-value=1.9 Score=41.68 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=22.8
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
.+++.+++|+|||.++.-.+...... .+.+++++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~---~g~kV~lV~ 135 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK---QGKKVLLVA 135 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh---CCCeEEEEe
Confidence 47889999999999866544442212 133566664
No 385
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.35 E-value=0.74 Score=45.09 Aligned_cols=54 Identities=17% Similarity=0.041 Sum_probs=33.7
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
+..|.-+++.+++|+|||...+..+..... .+.++++++... -..|+......+
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~----~g~kvlYvs~EE-s~~qi~~ra~rl 144 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAK----NQMKVLYVSGEE-SLQQIKMRAIRL 144 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHh----cCCcEEEEECcC-CHHHHHHHHHHc
Confidence 334567899999999999875544433322 234799987643 345555544443
No 386
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.27 E-value=0.31 Score=45.98 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=20.6
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHh
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSN 96 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~ 96 (464)
.+..++++||||+|||.+. -+++..+..
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHhh
Confidence 3677999999999999863 445555543
No 387
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.19 E-value=1.5 Score=40.22 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=33.1
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc--cHHHHHHHHHHHHHhccccCceEEE
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP--TRDLALQVKDVFAAIAPAVGLSVGL 134 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P--~~~L~~q~~~~~~~~~~~~~~~v~~ 134 (464)
..+++.|..|+|||.+..-.+. .+.. .+.++++.+- .++= ..+.++.|+.+.|.++..
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~-~l~~---~g~~VllaA~DTFRAa---AiEQL~~w~er~gv~vI~ 199 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAK-YLKQ---QGKSVLLAAGDTFRAA---AIEQLEVWGERLGVPVIS 199 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHH-HHHH---CCCeEEEEecchHHHH---HHHHHHHHHHHhCCeEEc
Confidence 3478899999999998554333 3332 2446666642 2222 233444455555766655
No 388
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.15 E-value=1.2 Score=42.18 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=14.8
Q ss_pred CCEEEECCCCchhHHHhH
Q 012427 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
+.+++.||+|+|||.++.
T Consensus 37 ~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457999999999997644
No 389
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.09 E-value=1.6 Score=42.08 Aligned_cols=62 Identities=16% Similarity=0.075 Sum_probs=35.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc--cHHHHHHHHHHHHHhccccCceEEEeecC
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP--TRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P--~~~L~~q~~~~~~~~~~~~~~~v~~~~g~ 138 (464)
.-++++|++|+|||.++.-.+. .+.. .+.++++++. .+.-+ .++++.++...++++......
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~-~l~~---~G~kV~lV~~D~~R~aA---~eQLk~~a~~~~vp~~~~~~~ 164 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAY-YYQR---KGFKPCLVCADTFRAGA---FDQLKQNATKARIPFYGSYTE 164 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH---CCCCEEEEcCcccchhH---HHHHHHHhhccCCeEEeecCC
Confidence 3478899999999987654333 2322 2446777753 33322 233444444456766544443
No 390
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.08 E-value=1.2 Score=41.65 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=27.2
Q ss_pred cchhhHHhHHhhhCCCCC-CCCEEEECCCCchhHHHhHH
Q 012427 51 LFPVQVAVWQETIGPGLF-ERDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~-~~~~li~~~tG~GKT~~~~~ 88 (464)
++|||...++.+.....+ ....++.||.|+||+..+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~ 40 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH 40 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH
Confidence 368888888887653211 24578999999999987543
No 391
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.08 E-value=0.73 Score=48.32 Aligned_cols=35 Identities=17% Similarity=0.008 Sum_probs=22.4
Q ss_pred hhhHHhHHhhhCCCC--CCCCEEEECCCCchhHHHhH
Q 012427 53 PVQVAVWQETIGPGL--FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 53 ~~Q~~~~~~i~~~~~--~~~~~li~~~tG~GKT~~~~ 87 (464)
-.|.+.+..++..+. ...|+++.||+|+|||...-
T Consensus 185 igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 185 IGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred cCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 345444444443222 23689999999999998644
No 392
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.05 E-value=1.6 Score=41.54 Aligned_cols=42 Identities=29% Similarity=0.208 Sum_probs=24.3
Q ss_pred EEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 012427 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (464)
Q Consensus 73 li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q 116 (464)
++.++.|+|||.+....++..+..... ...++++ |+..-+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-GRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS---EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-CcEEEEe-cCHHHHHH
Confidence 467899999999987777766665421 2345555 65555444
No 393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.99 E-value=0.52 Score=41.43 Aligned_cols=45 Identities=18% Similarity=-0.099 Sum_probs=28.6
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc--cCCccEEEEccc
Q 012427 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPT 110 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~--~~~~~~lil~P~ 110 (464)
+..|.-+.+.+++|+|||..++..+......+. ....+++++...
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 334677899999999999876655554433210 011467887654
No 394
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.88 E-value=0.68 Score=45.33 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.7
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+..++.||+|+|||.++..
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARI 58 (451)
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 4578999999999987554
No 395
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.87 E-value=1.1 Score=40.42 Aligned_cols=47 Identities=17% Similarity=-0.007 Sum_probs=31.0
Q ss_pred hhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012427 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 61 ~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
.++.-+..|.=+++.|.||.|||..++-.+....... +..+++++.-
T Consensus 11 ~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~---~~~vly~SlE 57 (259)
T PF03796_consen 11 RLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG---GYPVLYFSLE 57 (259)
T ss_dssp HHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT---SSEEEEEESS
T ss_pred HHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc---CCeEEEEcCC
Confidence 3344344466689999999999987666566555543 3478998753
No 396
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.87 E-value=0.52 Score=47.40 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.4
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+..++.||.|+|||.++-.
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478999999999987553
No 397
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.80 E-value=0.84 Score=45.37 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+..++.||.|+|||.++..
T Consensus 37 hayLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSARI 55 (535)
T ss_pred eeEEEECCCCCcHHHHHHH
Confidence 3458999999999987543
No 398
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.74 E-value=1.5 Score=39.51 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=27.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc---cHHHHHHHHH
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP---TRDLALQVKD 119 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P---~~~L~~q~~~ 119 (464)
+..+.+.+++|+|||..+...+... .. .+.++.+++- ......||..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l-~~---~~~~v~~i~~D~~ri~~~~ql~~ 124 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF-HG---KKKTVGFITTDHSRIGTVQQLQD 124 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HH---cCCeEEEEecCCCCHHHHHHHHH
Confidence 3678999999999998765433332 22 2335665543 2344555543
No 399
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.72 E-value=0.38 Score=42.51 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=60.4
Q ss_pred eeEeeccCcccHHHHHHHHHHHhcCC----eeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhh-hh-cCCCCc
Q 012427 360 IKIKEYSGLQRQSVRSKTLKAFREGK----IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR-TA-RAGQLG 433 (464)
Q Consensus 360 ~~~~~~~~~~~~~~r~~~~~~f~~~~----~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR-~~-R~g~~g 433 (464)
+.+..++++.+... + .+..+. ..|+|+-+.+++|+.++++.+..+...+....++.|| || .| |.|-.+
T Consensus 111 ~~v~~vNS~~~~~~----l-dy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~gY~d 184 (239)
T PF10593_consen 111 IEVVVVNSGSSDDS----L-DYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPGYED 184 (239)
T ss_pred ceEEEEeCCCcccc----c-cccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCccccc
Confidence 67777776655432 2 233332 7899999999999999999999999998888888887 55 44 777777
Q ss_pred cEEEEeeCcccccc
Q 012427 434 RCFTLLHKDEKKGA 447 (464)
Q Consensus 434 ~~~~~~~~~~~~~~ 447 (464)
.|=+|+..+-.+.|
T Consensus 185 l~Ri~~~~~l~~~f 198 (239)
T PF10593_consen 185 LCRIYMPEELYDWF 198 (239)
T ss_pred ceEEecCHHHHHHH
Confidence 88888766554443
No 400
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.65 E-value=0.94 Score=43.23 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.0
Q ss_pred CCEEEECCCCchhHHHhH
Q 012427 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
..+++.||+|+|||..+.
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997644
No 401
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.62 E-value=0.42 Score=48.68 Aligned_cols=150 Identities=19% Similarity=0.172 Sum_probs=70.0
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHH
Q 012427 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 145 (464)
+..|+.+.+.||||+|||...- ++..+... ....+++ ...++.+=-.+.+++.-....-....+.| +..+.+
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~--LL~r~~~~--~~G~I~i--dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~--TI~~NI 423 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIK--LLLRLYDP--TSGEILI--DGIDIRDISLDSLRKRIGIVSQDPLLFSG--TIRENI 423 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHH--HHhccCCC--CCCeEEE--CCEehhhcCHHHHHHhccEEcccceeecc--cHHHHH
Confidence 4467889999999999987433 44444432 2235665 44444432333333322211111222221 122211
Q ss_pred HHhhcccc---c-cccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCC----CcCCCCccEEEEehhhHhhhHhhhhh
Q 012427 146 SELIKRPK---L-EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR----GFTLEHLCYLVVDETDRLLREAYQAW 217 (464)
Q Consensus 146 ~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~----~~~~~~~~~iIvDE~H~~~~~~~~~~ 217 (464)
........ . .........+....++++.+-.|+.-+.-++--.+.. ..-+.+..++|+|||..-++..-...
T Consensus 424 ~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~ 503 (567)
T COG1132 424 ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEAL 503 (567)
T ss_pred hcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHH
Confidence 11100000 0 0000011233344555567777773322111111000 01144568999999999888877777
Q ss_pred HHHHHH
Q 012427 218 LPTVLQ 223 (464)
Q Consensus 218 ~~~~~~ 223 (464)
+.+.+.
T Consensus 504 I~~~l~ 509 (567)
T COG1132 504 IQDALK 509 (567)
T ss_pred HHHHHH
Confidence 766665
No 402
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.56 E-value=0.58 Score=41.24 Aligned_cols=54 Identities=13% Similarity=-0.001 Sum_probs=32.8
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
+..|..+++.+++|+|||..+...+.+.+.. +.++++++-. ....++.+..+.+
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~----g~~~~~is~e-~~~~~i~~~~~~~ 70 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD----GDPVIYVTTE-ESRESIIRQAAQF 70 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEEcc-CCHHHHHHHHHHh
Confidence 3357789999999999998755444444432 3367777642 2234444444433
No 403
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.47 E-value=0.39 Score=49.22 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=15.2
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
+-.|+.||.|+|||.++-.
T Consensus 41 HAYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 41 HAYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3368999999999987543
No 404
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=1.3 Score=44.87 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=33.1
Q ss_pred cEEEe-CchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccc
Q 012427 174 DILVA-TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (464)
Q Consensus 174 ~IiI~-T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~ 227 (464)
.-.|+ =|+++...+...+..+. ++++||.|.|.++..++-...++..+..
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP----v~LLDEIDKm~ss~rGDPaSALLEVLDP 447 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP----VFLLDEIDKMGSSFRGDPASALLEVLDP 447 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC----eEEeechhhccCCCCCChHHHHHhhcCH
Confidence 44444 48888888877654432 8999999999776555545555554443
No 405
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.43 E-value=0.94 Score=47.02 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.5
Q ss_pred CCEEEECCCCchhHHHhH
Q 012427 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.++++.||+|+|||..+-
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999998644
No 406
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.36 E-value=0.23 Score=47.78 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=36.0
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
++++.||||+|||..+++|.+-.. ...++|+=|.-++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999998877655321 236889999988887766665544
No 407
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.27 E-value=0.7 Score=40.59 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=34.8
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.+..+++.+++|+|||..++-.+...+.+ +.++++++-.. -.+++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~----g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN----GEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECCC-CHHHHHHHHHHc
Confidence 46778999999999998655444444433 44788887543 355666666555
No 408
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.24 E-value=1.8 Score=46.42 Aligned_cols=80 Identities=11% Similarity=0.304 Sum_probs=65.5
Q ss_pred CCCeEEEEecChhhHHHHHHHHhh-cCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc-cccccCCCCCCCeEE
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~-~~~~Gidip~~~~vi 408 (464)
.+..+.|.+|+.--|+.=.+.+++ +.+.++++..+..-.+..+.+++++...+|+.+|||+|- .++.+|-+.++..+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 456899999997666655555543 234558999999999999999999999999999999995 568899999999988
Q ss_pred Ee
Q 012427 409 NY 410 (464)
Q Consensus 409 ~~ 410 (464)
+-
T Consensus 722 ID 723 (1139)
T COG1197 722 ID 723 (1139)
T ss_pred Ee
Confidence 74
No 409
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.20 E-value=0.28 Score=52.05 Aligned_cols=34 Identities=21% Similarity=0.046 Sum_probs=23.8
Q ss_pred hhHHhHHhhhCCCCC--------C---CCEEEECCCCchhHHHhH
Q 012427 54 VQVAVWQETIGPGLF--------E---RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 54 ~Q~~~~~~i~~~~~~--------~---~~~li~~~tG~GKT~~~~ 87 (464)
.|..++..+..++.. + ..+++.||||+|||..+-
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~ 557 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTK 557 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHH
Confidence 688887766544321 1 247899999999998644
No 410
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.19 E-value=2.2 Score=35.63 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=20.8
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+++.+++|+|||......+.. +... +.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~-~~~~---g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALY-LKKK---GKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC---CCcEEEEE
Confidence 578999999999875543332 2222 33565554
No 411
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.13 E-value=0.4 Score=48.47 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=40.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.+++++.||||+|||..+++|.+-.. ...++|+=|.-++....+...++.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 36799999999999999998876543 225899999999998777777665
No 412
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.13 E-value=0.46 Score=40.78 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=22.0
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012427 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
+++.||||+|||.+. .+++..+... .+.+++.+-..
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~--~~~~i~t~e~~ 39 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN--KTHHILTIEDP 39 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc--CCcEEEEEcCC
Confidence 689999999999864 3344444322 12345555443
No 413
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=90.07 E-value=5.8 Score=30.84 Aligned_cols=79 Identities=20% Similarity=0.412 Sum_probs=53.1
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcC-CcEEEe
Q 012427 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IiI~ 178 (464)
.+.++||.+++..-++++.+.+.. .+..+..++|..+.... ......+.++ ..|+++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~------------------~~~~~~f~~~~~~ili~ 84 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEER------------------EEVLKDFREGEIVVLVA 84 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHH------------------HHHHHHHHcCCCcEEEE
Confidence 345799999999998888888876 36788889988764433 2222333333 578888
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEehhh
Q 012427 179 TPGRLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
|.. + ..++++...+.+|+.+..
T Consensus 85 t~~-~------~~G~d~~~~~~vi~~~~~ 106 (131)
T cd00079 85 TDV-I------ARGIDLPNVSVVINYDLP 106 (131)
T ss_pred cCh-h------hcCcChhhCCEEEEeCCC
Confidence 842 1 234666677778777764
No 414
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.06 E-value=2.3 Score=41.76 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=62.4
Q ss_pred CchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccc
Q 012427 79 GSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158 (464)
Q Consensus 79 G~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~ 158 (464)
...|--. +..++..+. +....++||.|-|+.-++++...++.. ++++..+||+.+...+...
T Consensus 322 ~~~K~~~-l~~lL~~~~--~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~----------- 383 (519)
T KOG0331|consen 322 ETAKLRK-LGKLLEDIS--SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWV----------- 383 (519)
T ss_pred HHHHHHH-HHHHHHHHh--ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHH-----------
Confidence 4445543 334454444 234558999999999999888888775 5789999999887665322
Q ss_pred cCCchhHHHhh-hcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEE
Q 012427 159 CYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (464)
Q Consensus 159 ~~~~~~~~~~~-~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIv 203 (464)
.+.. ...+.|+|+|- + ...++++.++++||-
T Consensus 384 -------L~~FreG~~~vLVATd------V-AaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 384 -------LKGFREGKSPVLVATD------V-AARGLDVPDVDLVIN 415 (519)
T ss_pred -------HHhcccCCcceEEEcc------c-ccccCCCccccEEEe
Confidence 2223 34489999992 1 124577888888875
No 415
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.05 E-value=2.5 Score=43.66 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=46.1
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCc----cceeEeeccCcccHHHHHHHHHHHhcC--------CeeEEEEccccccc
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREG--------KIQVLVSSDAMTRG 398 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~--------~~~iLi~t~~~~~G 398 (464)
-...+|+|++|....+++....+..+. ...+-..+ .--+..+-.+++..|.+. ..-+-||-...++|
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG 638 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG 638 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCC
Confidence 345699999999877777554443110 00111111 111233344555555422 22344556678999
Q ss_pred CCCCC--CCeEEEecCC
Q 012427 399 MDVEG--VNNVVNYDKP 413 (464)
Q Consensus 399 idip~--~~~vi~~~~~ 413 (464)
+|+.+ .+.||+.+.|
T Consensus 639 lDFsD~~~RaVI~tGlP 655 (945)
T KOG1132|consen 639 LDFSDDNGRAVIITGLP 655 (945)
T ss_pred CCccccCCceeEEecCC
Confidence 99985 5678998876
No 416
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=89.98 E-value=2.6 Score=39.12 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=29.1
Q ss_pred cchhhHHhHHhhhCCCCCC---CCEEEECCCCchhHHHhHH
Q 012427 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~---~~~li~~~tG~GKT~~~~~ 88 (464)
++|||...++.+...+.++ .-.++.||.|.||+..+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~ 43 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA 43 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH
Confidence 4688888888877666555 3577999999999987543
No 417
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.97 E-value=0.93 Score=46.23 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.8
Q ss_pred CCEEEECCCCchhHHHhH
Q 012427 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
+..|++||.|+|||.++.
T Consensus 40 hayLf~Gp~G~GKtt~A~ 57 (614)
T PRK14971 40 HAYLFCGPRGVGKTTCAR 57 (614)
T ss_pred eeEEEECCCCCCHHHHHH
Confidence 447999999999998544
No 418
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=89.93 E-value=1.4 Score=41.38 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.2
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
.+.|++||+|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 6799999999999986553
No 419
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.84 E-value=0.34 Score=49.00 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=44.7
Q ss_pred HHHHhcCCeeEEEEcccccccCCCCCCC--------eEEEecCCCCcchhhhhhhhhhcCCC
Q 012427 378 LKAFREGKIQVLVSSDAMTRGMDVEGVN--------NVVNYDKPAYIKTYIHRAGRTARAGQ 431 (464)
Q Consensus 378 ~~~f~~~~~~iLi~t~~~~~Gidip~~~--------~vi~~~~~~s~~~~~Q~~GR~~R~g~ 431 (464)
-++|-.|+..|-|-+.+++.||.+..-. +=|-+.+|||...-+|++||.+|.++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 4567889988888889999999987522 34567899999999999999999875
No 420
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.75 E-value=0.27 Score=44.64 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=28.1
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
.+.++++.|+||+|||... .+++..+... ..+++.+-.+.++
T Consensus 126 ~~~~ili~G~tGSGKTT~l-~all~~i~~~---~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLL-NALLEEIPPE---DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHCHTT---TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHH-HHHhhhcccc---ccceEEeccccce
Confidence 4789999999999999863 4455544432 2467776655554
No 421
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=89.72 E-value=0.5 Score=40.97 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=27.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
.|.-+.+.||+|+|||..++..+...... +.+++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~----g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ----GKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC
Confidence 35678999999999998866544444332 3468888654
No 422
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.71 E-value=0.5 Score=31.56 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=18.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHH
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
+...++.+++|+|||...- ++..++
T Consensus 23 g~~tli~G~nGsGKSTllD--Ai~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLD--AIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHH--HHHHHH
Confidence 4579999999999998533 444444
No 423
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=89.67 E-value=0.41 Score=47.43 Aligned_cols=50 Identities=24% Similarity=0.283 Sum_probs=37.8
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
.++++.||||+|||..+++|.+- .. ...++|.=|.-++........++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll--~~----~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL--NY----PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH--hc----cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 47999999999999999887652 21 1258888899888877666666553
No 424
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.66 E-value=0.82 Score=41.24 Aligned_cols=47 Identities=23% Similarity=0.464 Sum_probs=28.7
Q ss_pred HHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHH
Q 012427 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (464)
Q Consensus 42 ~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~ 94 (464)
.+.++|+ .+.|.+.+..+.. ..+..+++.++||+|||... -+++..+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 3556664 4456655544442 12356899999999999863 3344444
No 425
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.65 E-value=2.1 Score=39.89 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=16.4
Q ss_pred CCC-EEEECCCCchhHHHhHH
Q 012427 69 ERD-LCINSPTGSGKTLSYAL 88 (464)
Q Consensus 69 ~~~-~li~~~tG~GKT~~~~~ 88 (464)
..+ .++.||.|+|||.++..
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~ 43 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALA 43 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHH
Confidence 455 99999999999987554
No 426
>PRK14701 reverse gyrase; Provisional
Probab=89.64 E-value=1.2 Score=50.45 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=54.9
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCc---cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~ 394 (464)
.+.++||.+|+++.+..+.+.++.... .+..+..+||+++..++.++++.+.+|+.+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999999887532 3467888999999999999999999999999999975
No 427
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.61 E-value=1.4 Score=39.51 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
+.+++.+|+|+||+..+-..+-+ .+ .+++-+.+.+|+..|.-+-.++
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATE-------An-STFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATE-------AN-STFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhh-------cC-CceEEeehHHHHHHHhccHHHH
Confidence 34899999999999753322221 22 4788888889988776655554
No 428
>PHA00350 putative assembly protein
Probab=89.61 E-value=0.91 Score=43.15 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=18.1
Q ss_pred EEEECCCCchhHHHhHHH-HHHHHHh
Q 012427 72 LCINSPTGSGKTLSYALP-IVQTLSN 96 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~~-~l~~~~~ 96 (464)
.++.|..|+|||+.++.- ++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 578999999999987653 4444443
No 429
>PRK12608 transcription termination factor Rho; Provisional
Probab=89.60 E-value=2.9 Score=39.45 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=24.7
Q ss_pred hhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 012427 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 53 ~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~ 86 (464)
..-.++++.+. .+..|++.++.||.|+|||...
T Consensus 118 ~~~~RvID~l~-PiGkGQR~LIvG~pGtGKTTLl 150 (380)
T PRK12608 118 DLSMRVVDLVA-PIGKGQRGLIVAPPRAGKTVLL 150 (380)
T ss_pred chhHhhhhhee-ecCCCceEEEECCCCCCHHHHH
Confidence 34455666544 4567899999999999999863
No 430
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.54 E-value=0.56 Score=50.05 Aligned_cols=96 Identities=19% Similarity=0.140 Sum_probs=69.2
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCee-EEEEcccccccCCCCCCCeEEE
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ-VLVSSDAMTRGMDVEGVNNVVN 409 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-iLi~t~~~~~Gidip~~~~vi~ 409 (464)
...++|||+.=......+...+.-.+ +... ..++ .++..+.+..|++ ++ +++-+...+.|+|+-++.||+.
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~---I~~~-~~~~--t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl 1291 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNL---IKKQ-LDGE--TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFL 1291 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhh---hHhh-hccC--Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhhe
Confidence 34689999877766666666664322 2221 2222 2334566677766 44 4566778889999999999999
Q ss_pred ecCCCCcchhhhhhhhhhcCCCCcc
Q 012427 410 YDKPAYIKTYIHRAGRTARAGQLGR 434 (464)
Q Consensus 410 ~~~~~s~~~~~Q~~GR~~R~g~~g~ 434 (464)
.++-.++..-.|.+||+.|.|+...
T Consensus 1292 ~ePiLN~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1292 VEPILNPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred eccccCchHHHhhhhhhhhcccccc
Confidence 9999999999999999999997553
No 431
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.48 E-value=1 Score=42.19 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=38.1
Q ss_pred HHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 40 ~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
...+.+.|+ +.+.+...+..+.. .+.++++.++||+|||... -+++..+. ...+++.+-.+.++
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~---~~~~ili~G~tGsGKTTll-~al~~~i~----~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVA---ARLAFLISGGTGSGKTTLL-SALLALVA----PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHh---CCCeEEEECCCCCCHHHHH-HHHHccCC----CCCcEEEECCccee
Confidence 344445554 45566666555443 4689999999999999742 22333222 23456666555555
No 432
>PRK10436 hypothetical protein; Provisional
Probab=89.33 E-value=0.46 Score=46.42 Aligned_cols=47 Identities=32% Similarity=0.574 Sum_probs=28.3
Q ss_pred HHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 012427 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 43 ~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
+.++|+ .+.|.+.+..+.. ..+.-+++.||||||||.+. .+++..+.
T Consensus 197 L~~LG~---~~~~~~~l~~~~~--~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQ--QPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHH--hcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 445554 3445555444432 12456899999999999874 34555543
No 433
>PHA00012 I assembly protein
Probab=89.27 E-value=0.67 Score=42.31 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.9
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHhh
Q 012427 72 LCINSPTGSGKTLSYALPIVQTLSNR 97 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~~~l~~~~~~ 97 (464)
.++.|-.|+|||+.++..+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 57899999999998887677666654
No 434
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=89.23 E-value=0.17 Score=43.12 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=18.9
Q ss_pred hHHhHHhhhCCCCCCCCEEEECCCCchhHHH
Q 012427 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 55 Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~ 85 (464)
|..+-.++.-+...+.++++.+|.|+|||..
T Consensus 8 Qe~aKrAL~iAAaG~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 8 QEEAKRALEIAAAGGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp THHHHHHHHHHHHCC--EEEES-CCCTHHHH
T ss_pred cHHHHHHHHHHHcCCCCeEEECCCCCCHHHH
Confidence 4444444433334578999999999999975
No 435
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=88.91 E-value=3.6 Score=42.38 Aligned_cols=91 Identities=19% Similarity=0.415 Sum_probs=61.2
Q ss_pred HHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh
Q 012427 90 IVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (464)
Q Consensus 90 ~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (464)
++..+......+.+++|.|+|+..++.+.+.+.+. |+++..++++.+...+.. ....+
T Consensus 431 Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~------------------~l~~f 488 (655)
T TIGR00631 431 LLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVE------------------IIRDL 488 (655)
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHH------------------HHHHH
Confidence 33334333335668999999999988888888765 788888988866544422 22223
Q ss_pred h-cCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh
Q 012427 170 Q-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (464)
Q Consensus 170 ~-~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~ 209 (464)
. ...+|+|+| +.+. .++.+.+++++|+-|++.+
T Consensus 489 r~G~i~VLV~t-----~~L~--rGfDiP~v~lVvi~Dadif 522 (655)
T TIGR00631 489 RLGEFDVLVGI-----NLLR--EGLDLPEVSLVAILDADKE 522 (655)
T ss_pred hcCCceEEEEc-----Chhc--CCeeeCCCcEEEEeCcccc
Confidence 2 346888888 2233 3577888999988887764
No 436
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.87 E-value=0.51 Score=46.61 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.0
Q ss_pred EEEECCCCchhHHHhHH
Q 012427 72 LCINSPTGSGKTLSYAL 88 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~ 88 (464)
.++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999876543
No 437
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=88.63 E-value=0.61 Score=40.29 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=18.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHH
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
..++++.|.||+|||......+...+.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 468999999999999876554444444
No 438
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=88.60 E-value=0.75 Score=38.77 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhh
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~ 97 (464)
.++.+++.|+.|+|||... ..++..+...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll-~~~~~~~~~~ 51 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLL-RALLDRLAER 51 (185)
T ss_dssp ----EEE-B-TTSSHHHHH-HHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHhc
Confidence 3477999999999999863 3344454443
No 439
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.58 E-value=0.74 Score=43.63 Aligned_cols=38 Identities=24% Similarity=0.074 Sum_probs=24.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+..++++||||+|||.. +-+++..+.... ...+++.+=
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~-~~~~IvtiE 186 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETY-PDRKIVTYE 186 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcC-CCceEEEEe
Confidence 45789999999999986 344555554321 223455543
No 440
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=88.51 E-value=1.1 Score=38.26 Aligned_cols=58 Identities=22% Similarity=0.137 Sum_probs=35.1
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhh------ccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
.|.-+++.|++|+|||...+-.+....... .....+++++..-.. ..++.+.+..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 466789999999999987665555444311 113457888876554 4466677766543
No 441
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=88.50 E-value=0.79 Score=40.40 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=29.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
.+++.+.|.||+|||.+... +++.+... .+.+++|+=|.=+-
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~~--~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLKK--KGAKVIIFDPHGEY 64 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHhc--CCCCEEEEcCCCcc
Confidence 58899999999999987544 55555531 34468888776443
No 442
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.48 E-value=1.9 Score=44.02 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=15.9
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
..+++.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 5679999999999987553
No 443
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.48 E-value=0.85 Score=45.27 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=36.2
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
..|..+++.+|+|+|||...+..+...+. .+.++++++ ..+-..|+.+.+..+
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~----~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACA----NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 34567899999999999875554444433 345788887 334466677777665
No 444
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.40 E-value=0.7 Score=43.57 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=26.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
+..+++.||||+|||.+. .+++..+... .+.+++.+-...+.
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~--~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN--AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC--CCCEEEEEcCChhh
Confidence 577999999999999863 3344444322 23356665544443
No 445
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=88.37 E-value=2.9 Score=39.69 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.5
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
.-.++.||.|+||+..+..
T Consensus 42 HA~Lf~Gp~G~GK~~lA~~ 60 (365)
T PRK07471 42 HAWLIGGPQGIGKATLAYR 60 (365)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999987543
No 446
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.35 E-value=0.99 Score=44.78 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=37.1
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012427 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
+..+..+++.+++|+|||..++-.+.+-+.+ .+.++++++-. +-..++.+.+..+.
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~---~ge~~lyvs~e-E~~~~l~~~~~~~G 73 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH---FDEPGVFVTFE-ESPQDIIKNARSFG 73 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEe-cCHHHHHHHHHHcC
Confidence 3357789999999999998755544444443 13478888843 44455666666653
No 447
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=88.29 E-value=4.1 Score=37.42 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=21.9
Q ss_pred cEEEEehhhHhhhHhhhhhHHHHHHhccc
Q 012427 199 CYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (464)
Q Consensus 199 ~~iIvDE~H~~~~~~~~~~~~~~~~~~~~ 227 (464)
-..|+||.|.+.....+-.+.++++...+
T Consensus 139 ViFIldEfDlf~~h~rQtllYnlfDisqs 167 (408)
T KOG2228|consen 139 VIFILDEFDLFAPHSRQTLLYNLFDISQS 167 (408)
T ss_pred EEEEeehhhccccchhhHHHHHHHHHHhh
Confidence 47788999988777777777777776654
No 448
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=88.07 E-value=2.3 Score=40.29 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchhHHH
Q 012427 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
..+.+.++|+.|+|||..
T Consensus 61 ~~~GlYl~G~vG~GKT~L 78 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTML 78 (362)
T ss_pred CCceEEEECCCCCchhHH
Confidence 457899999999999984
No 449
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=88.04 E-value=1.4 Score=38.68 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012427 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.||+|+|||..+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999997544
No 450
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=88.03 E-value=4.4 Score=37.20 Aligned_cols=84 Identities=15% Similarity=0.265 Sum_probs=58.9
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeC
Q 012427 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T 179 (464)
.+..+||.+|+++.++|.+..+++..+. ..++.++..+....+...... ....+++|+|
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~--~~i~~Vhs~d~~R~EkV~~fR-------------------~G~~~lLiTT 362 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPK--ETIASVHSEDQHRKEKVEAFR-------------------DGKITLLITT 362 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCc--cceeeeeccCccHHHHHHHHH-------------------cCceEEEEEe
Confidence 4557999999999999999999766553 566777777765554333221 1235899988
Q ss_pred chHHHHhhhcCCCcCCCCccEEEEehhhHhhh
Q 012427 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~ 211 (464)
. .|.+ ++.+.++++.|++--|++..
T Consensus 363 T-----ILER--GVTfp~vdV~Vlgaeh~vfT 387 (441)
T COG4098 363 T-----ILER--GVTFPNVDVFVLGAEHRVFT 387 (441)
T ss_pred e-----hhhc--ccccccceEEEecCCccccc
Confidence 3 3343 46778999999998887644
No 451
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.01 E-value=1.6 Score=45.73 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012427 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
...++++.||+|+|||..+-
T Consensus 206 ~~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 35789999999999998643
No 452
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.99 E-value=2.7 Score=39.19 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-c-
Q 012427 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M- 395 (464)
Q Consensus 319 ~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~- 395 (464)
-+..+..++++.....++|.+|+++-|..+++.+...+ ..+..+..+-|||+.... ....+ .+.+|||||+- +
T Consensus 116 aLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q--~~~L~--kkPhilVaTPGrL~ 191 (476)
T KOG0330|consen 116 ALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQ--ANQLS--KKPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHH--HHHhh--cCCCEEEeCcHHHH
Confidence 34456666666666789999999999999999999874 567899999999986432 22222 45688999962 1
Q ss_pred -----cccCCCCCCCeEEE
Q 012427 396 -----TRGMDVEGVNNVVN 409 (464)
Q Consensus 396 -----~~Gidip~~~~vi~ 409 (464)
..|+.+..+.+.|.
T Consensus 192 dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred HHHHhccCccHHHhHHHhh
Confidence 25777766666554
No 453
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=87.83 E-value=0.81 Score=40.21 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=27.7
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
.|.-+.+.+++|+|||..++..+.+.+.. +.+++++.-.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~----~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN----GKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEECC
Confidence 45678999999999998766655554433 3468887644
No 454
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=87.73 E-value=1.1 Score=37.28 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.2
Q ss_pred CCCCEEEECCCCchhHHH
Q 012427 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
...++++.|++|+||+..
T Consensus 21 ~~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELL 38 (168)
T ss_dssp STS-EEEECSTTSSHHHH
T ss_pred CCCCEEEEcCCCCcHHHH
Confidence 468899999999999985
No 455
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.64 E-value=1.3 Score=47.19 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 012427 69 ERDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~ 88 (464)
..+.++.||+|+|||..+-.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred cCCeEEECCCCCCHHHHHHH
Confidence 46899999999999987543
No 456
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.56 E-value=2.8 Score=36.72 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.7
Q ss_pred CCCEEEECCCCchhHHH
Q 012427 69 ERDLCINSPTGSGKTLS 85 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~ 85 (464)
.+.+++.||-|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 46789999999999984
No 457
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=87.49 E-value=1.3 Score=48.80 Aligned_cols=82 Identities=10% Similarity=0.277 Sum_probs=60.1
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCc-cce---eEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccc-cccCC-CC-C
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRI---KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM-TRGMD-VE-G 403 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~-~~Gid-ip-~ 403 (464)
.+.+++|.+|+++.+..+++.++.... .++ .+..+||+++..++.+.++.+.++..+|||+|+.. ...++ +. .
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~ 199 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPK 199 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCC
Confidence 367899999999999999888877542 112 24468999999999889999999989999999742 21211 12 5
Q ss_pred CCeEEEecC
Q 012427 404 VNNVVNYDK 412 (464)
Q Consensus 404 ~~~vi~~~~ 412 (464)
++++|+...
T Consensus 200 ~~~iVvDEa 208 (1171)
T TIGR01054 200 FDFIFVDDV 208 (1171)
T ss_pred CCEEEEeCh
Confidence 777776553
No 458
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.48 E-value=3.8 Score=38.40 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=29.6
Q ss_pred cchhhHHhHHhhhCCCCCC---CCEEEECCCCchhHHHhHH
Q 012427 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~---~~~li~~~tG~GKT~~~~~ 88 (464)
++|||...|+.+...+..+ .-.++.||.|+||+..+..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~ 43 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH
Confidence 5788999988887665555 3578999999999987543
No 459
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=87.46 E-value=2.1 Score=42.86 Aligned_cols=73 Identities=18% Similarity=0.396 Sum_probs=56.7
Q ss_pred EEEEecChhhHHHHHHHHhhcCcc--ceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc-----ccccc-CCCCCCCe
Q 012427 335 CIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEGVNN 406 (464)
Q Consensus 335 ~lVf~~s~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~-----~~~~G-idip~~~~ 406 (464)
+||.+++++.|..+++.+...+.. .+.+..+.|+++...+. +.++.| .+|||+|+ .+..+ +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999998876532 47788999998876554 444445 89999996 34555 78888888
Q ss_pred EEEec
Q 012427 407 VVNYD 411 (464)
Q Consensus 407 vi~~~ 411 (464)
+|+..
T Consensus 178 lVlDE 182 (513)
T COG0513 178 LVLDE 182 (513)
T ss_pred EEecc
Confidence 88754
No 460
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.43 E-value=0.93 Score=41.43 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012427 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+.++++.||+|+|||.++-
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999998754
No 461
>PRK13531 regulatory ATPase RavA; Provisional
Probab=87.34 E-value=0.39 Score=46.67 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=27.4
Q ss_pred hhHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 012427 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 54 ~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~ 86 (464)
.|.+++.-+...+..+.++++.||+|+|||..+
T Consensus 24 gre~vI~lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 24 ERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred CcHHHHHHHHHHHccCCCEEEECCCChhHHHHH
Confidence 466777777777778999999999999999864
No 462
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=87.31 E-value=4.9 Score=39.14 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=53.5
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhc-CCcEEEe
Q 012427 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiI~ 178 (464)
..++++|.+.++.=++-+++.+.+. |+++..+||+.....+ +...+.+.. ..+|+|+
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQR------------------e~aL~~fr~~t~dIlVa 573 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQR------------------ENALADFREGTGDILVA 573 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHH------------------HHHHHHHHhcCCCEEEE
Confidence 3567999999988777777766665 7999999999887665 233334444 4799999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEE
Q 012427 179 TPGRLMDHINATRGFTLEHLCYLVV 203 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIv 203 (464)
|- -.+.+++..++++||=
T Consensus 574 TD-------vAgRGIDIpnVSlVin 591 (673)
T KOG0333|consen 574 TD-------VAGRGIDIPNVSLVIN 591 (673)
T ss_pred ec-------ccccCCCCCccceeee
Confidence 93 1234577788888773
No 463
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=87.26 E-value=0.71 Score=42.76 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.7
Q ss_pred CCCCCEEEECCCCchhHHH
Q 012427 67 LFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~ 85 (464)
..+.++++.||||+|||..
T Consensus 142 ~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hCCCEEEEECCCCCCHHHH
Confidence 3578999999999999985
No 464
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=87.22 E-value=1.7 Score=44.04 Aligned_cols=52 Identities=21% Similarity=0.099 Sum_probs=34.9
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHH--HHHHHHHHHHHh
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD--LALQVKDVFAAI 124 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~--L~~q~~~~~~~~ 124 (464)
..+.++.|+||+|||......+.+.+..+ ..++++=|... +...+...++..
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~g----~~vi~fDpkgD~el~~~~~~~~~~~ 233 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRRG----DVVIVFDPKGDADLLKRMYAEAKRA 233 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCCCCHHHHHHHHHHHHHh
Confidence 57899999999999998777666666543 35777777653 343344444443
No 465
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.18 E-value=0.72 Score=46.64 Aligned_cols=47 Identities=32% Similarity=0.477 Sum_probs=28.8
Q ss_pred HHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 012427 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 43 ~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
+.++|| .+.|.+.+..+.. .....++++||||||||.+. .+++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~--~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIH--KPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 456665 3445555444432 12456889999999999873 44555553
No 466
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=87.15 E-value=0.29 Score=47.82 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=23.5
Q ss_pred CCCccEEEEehhhHhhhHhhhhhHHHHHHhc
Q 012427 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~ 225 (464)
..+..+.|+|||-..++......+.+..+..
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 3457899999999988887777766666543
No 467
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=87.09 E-value=1.5 Score=44.79 Aligned_cols=53 Identities=23% Similarity=0.178 Sum_probs=35.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHH--HHHHHHHHHHHh
Q 012427 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD--LALQVKDVFAAI 124 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~--L~~q~~~~~~~~ 124 (464)
...++++.|+||+|||..+...+.+.+..+ ..++++=|.-+ +.......++..
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g----~~viv~DpKgD~~l~~~~~~~~~~~ 229 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRG----DVVIVIDPKGDADLKRRMRAEAKRA 229 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCCCchHHHHHHHHHHHHh
Confidence 358899999999999987655555555543 24666666643 555555555554
No 468
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.95 E-value=1.6 Score=44.04 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=22.7
Q ss_pred CCCccEEEEehhhHhhhHhhhhhHHHHHHh
Q 012427 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~ 224 (464)
+.+.+++|+||+=.-++......+.+.+..
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 566789999999988887777666655543
No 469
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.92 E-value=1.3 Score=46.81 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012427 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.||+|+|||..+-
T Consensus 346 ~~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34579999999999997543
No 470
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=86.77 E-value=0.85 Score=46.77 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=37.9
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.+++++.||||+|||..+++|.+-.. ...++|+=|.-++........++.
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~------~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTF------KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcC------CCCEEEEeCCchHHHHHHHHHHhC
Confidence 36899999999999999988865432 226888889988877666655543
No 471
>PRK06904 replicative DNA helicase; Validated
Probab=86.74 E-value=5.3 Score=39.43 Aligned_cols=61 Identities=13% Similarity=-0.114 Sum_probs=34.9
Q ss_pred HHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 012427 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 59 ~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
++.+..-+..|.=+++.|.||+|||..++-.+...... .+.+++|.+.- .-..|+...+-.
T Consensus 211 LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~---~g~~Vl~fSlE-Ms~~ql~~Rlla 271 (472)
T PRK06904 211 LDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA---SEKPVLVFSLE-MPAEQIMMRMLA 271 (472)
T ss_pred HHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh---cCCeEEEEecc-CCHHHHHHHHHH
Confidence 34444445556668889999999998654333333322 13367777643 334455554443
No 472
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=86.72 E-value=1.3 Score=42.32 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHCCCCccchhhHHh----HHhhhCCCCCCCCEEEECCCCchhHHHhHH
Q 012427 35 LDPRLKVALQNMGISSLFPVQVAV----WQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~----~~~i~~~~~~~~~~li~~~tG~GKT~~~~~ 88 (464)
.++|+--.+...|++ |..+..++ +...+.-+.++.|++..||+|+|||..+..
T Consensus 172 ~dEWid~LlrSiG~~-P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 172 LEEWIDVLIRSIGYE-PEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHHHHHHHHhcCCC-cccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 456777777888884 33332221 222223344679999999999999976553
No 473
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=86.51 E-value=5.4 Score=34.15 Aligned_cols=79 Identities=13% Similarity=0.237 Sum_probs=54.2
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCc-cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-----c-cccCCCCC
Q 012427 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEG 403 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-----~-~~Gidip~ 403 (464)
.+.+++|.+++...+...++.+..... .+..+..++|+.+..+.....+ ++.+|+|+|.. + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456899999999999888877766532 3467778888887655433322 56799999952 2 22356677
Q ss_pred CCeEEEecCC
Q 012427 404 VNNVVNYDKP 413 (464)
Q Consensus 404 ~~~vi~~~~~ 413 (464)
++++|+-...
T Consensus 144 l~~lIvDE~h 153 (203)
T cd00268 144 VKYLVLDEAD 153 (203)
T ss_pred CCEEEEeChH
Confidence 8888776544
No 474
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=86.48 E-value=3.6 Score=38.93 Aligned_cols=50 Identities=20% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
|.-+++-+.+|.|||...+-.+ ..+... + ++||++=-. -..|+.-...++
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva-~~lA~~---~-~vLYVsGEE-S~~QiklRA~RL 142 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVA-ARLAKR---G-KVLYVSGEE-SLQQIKLRADRL 142 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHH-HHHHhc---C-cEEEEeCCc-CHHHHHHHHHHh
Confidence 4557899999999998644433 333322 2 799998664 456677777766
No 475
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.38 E-value=1.6 Score=46.63 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=14.8
Q ss_pred CEEEECCCCchhHHHhH
Q 012427 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
.+++.||||+|||..+-
T Consensus 600 ~~Lf~Gp~G~GKT~lA~ 616 (857)
T PRK10865 600 SFLFLGPTGVGKTELCK 616 (857)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999999754
No 476
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=86.36 E-value=2.1 Score=44.55 Aligned_cols=45 Identities=20% Similarity=0.066 Sum_probs=30.8
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012427 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
+-.+.-+.+.+++|+|||..++..+..... .+.+++++..--.+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~----~G~~v~yId~E~t~~ 101 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQA----AGGVAAFIDAEHALD 101 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEECCccchh
Confidence 334566889999999999876655554433 244788887655554
No 477
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=86.26 E-value=0.52 Score=37.75 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.2
Q ss_pred CEEEECCCCchhHHHhH
Q 012427 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
++++.||+|+|||..+-
T Consensus 1 ~vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEEESSSSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 47999999999998643
No 478
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=86.16 E-value=0.77 Score=36.12 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.4
Q ss_pred EEEECCCCchhHHHhH
Q 012427 72 LCINSPTGSGKTLSYA 87 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~ 87 (464)
+++.||+|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999998633
No 479
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.16 E-value=2.1 Score=45.76 Aligned_cols=88 Identities=18% Similarity=0.094 Sum_probs=0.0
Q ss_pred hHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHhhcc---CCccEEEEcccHHHHH---------HHHHH
Q 012427 55 QVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLAL---------QVKDV 120 (464)
Q Consensus 55 Q~~~~~~i~~~~~~~--~~~li~~~tG~GKT~~~~~~~l~~~~~~~~---~~~~~lil~P~~~L~~---------q~~~~ 120 (464)
|...+..+...+.++ .+.++.||+|+|||...-..+........+ .+.+++.+-...-++. ++.+.
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~ 257 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAV 257 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHH
Q ss_pred HHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccE
Q 012427 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200 (464)
Q Consensus 121 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~ 200 (464)
+..+ .......+
T Consensus 258 l~~~--------------------------------------------------------------------~~~~~~~I 269 (852)
T TIGR03346 258 LNEV--------------------------------------------------------------------TKSEGQII 269 (852)
T ss_pred HHHH--------------------------------------------------------------------HhcCCCeE
Q ss_pred EEEehhhHhh
Q 012427 201 LVVDETDRLL 210 (464)
Q Consensus 201 iIvDE~H~~~ 210 (464)
+++||+|.+.
T Consensus 270 LfIDEih~l~ 279 (852)
T TIGR03346 270 LFIDELHTLV 279 (852)
T ss_pred EEeccHHHhh
No 480
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.11 E-value=3.5 Score=38.24 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=41.6
Q ss_pred CCCCCCCCHHHHHHHHH--CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEE
Q 012427 29 LDHLPCLDPRLKVALQN--MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 106 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~--~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~li 106 (464)
++++-||+++|++.-+. .+..+|--++ .+ -+...+.+++.||+|+|||+.+=. ..... + -.+|
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~-----~~--GI~PPKGVLLYGPPGTGKTLLAkA----VA~~T---~-AtFI 214 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFE-----EL--GIDPPKGVLLYGPPGTGKTLLAKA----VANQT---D-ATFI 214 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHH-----Hc--CCCCCCceEeeCCCCCcHHHHHHH----HHhcc---C-ceEE
Confidence 44445788888776554 3444443333 22 122358899999999999985321 11111 1 2555
Q ss_pred EcccHHHHH
Q 012427 107 VLPTRDLAL 115 (464)
Q Consensus 107 l~P~~~L~~ 115 (464)
=+...+|++
T Consensus 215 rvvgSElVq 223 (406)
T COG1222 215 RVVGSELVQ 223 (406)
T ss_pred EeccHHHHH
Confidence 566667765
No 481
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.09 E-value=1.6 Score=40.39 Aligned_cols=56 Identities=23% Similarity=0.219 Sum_probs=35.1
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
.+.+.|..-+..+.+ .+++++++++||+|||.. +.+++..+- ...+++.+--+.++
T Consensus 127 t~~~~~~ayL~~~ie---~~~siii~G~t~sGKTt~-lnall~~Ip----~~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIE---ARKSIIICGGTASGKTTL-LNALLDFIP----PEERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHH---cCCcEEEECCCCCCHHHH-HHHHHHhCC----chhcEEEEeccccc
Confidence 566666544333332 579999999999999975 444444433 23367776555544
No 482
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=86.09 E-value=0.61 Score=36.17 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=13.5
Q ss_pred EEEECCCCchhHHHhH
Q 012427 72 LCINSPTGSGKTLSYA 87 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~ 87 (464)
+++.|++|+|||..+-
T Consensus 2 I~I~G~~gsGKST~a~ 17 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAK 17 (121)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998643
No 483
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=85.95 E-value=1.3 Score=46.29 Aligned_cols=69 Identities=22% Similarity=0.221 Sum_probs=49.6
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012427 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
..++-|.+++..- ...+...+.+|+|+|||-++.- ++..+..+ -+.++++|++.+..-..|..+.+.+.
T Consensus 738 ~ft~~qveai~sg----~qpgltmvvgppgtgktd~avq-il~~lyhn-~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 738 KFTPTQVEAILSG----MQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHN-SPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred ccCHHHHHHHHhc----CCCCceeeecCCCCCCcchhhh-hhhhhhhc-CCCcceEEEEecccchhHHHHHHHhc
Confidence 4566787774432 2357789999999999987554 44444433 35668999999998888888877654
No 484
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.94 E-value=1.3 Score=40.19 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCchhHHH
Q 012427 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.++.++++||+|+|||..
T Consensus 32 ~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp CTEEEEEESSTTSSHHHH
T ss_pred cCCcEEEECCCCCchhHH
Confidence 478999999999999985
No 485
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=85.84 E-value=1.2 Score=39.22 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=23.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
.-++++.|++|||||.. ++.++..+.. .-..+++++|
T Consensus 13 ~fr~viIG~sGSGKT~l-i~~lL~~~~~---~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTL-IKSLLYYLRH---KFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHH-HHHHHHhhcc---cCCEEEEEec
Confidence 35799999999999975 3334433332 2234666667
No 486
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.82 E-value=2.8 Score=44.73 Aligned_cols=34 Identities=18% Similarity=0.044 Sum_probs=22.5
Q ss_pred hhHHhHHhhhCCCCC----------C-CCEEEECCCCchhHHHhH
Q 012427 54 VQVAVWQETIGPGLF----------E-RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 54 ~Q~~~~~~i~~~~~~----------~-~~~li~~~tG~GKT~~~~ 87 (464)
.|..++..+...+.. . ..+++.||||+|||..+-
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETAL 614 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHH
Confidence 576666655443311 1 137999999999998654
No 487
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=85.74 E-value=27 Score=31.60 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=22.8
Q ss_pred cChhhHHHHHHHHhhcCccceeEeeccCccc
Q 012427 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (464)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 370 (464)
.|+..|+.+++.|++.+ ..+..-|.++.
T Consensus 255 RSV~iae~La~~L~~~~---~~v~v~HRdl~ 282 (284)
T PF03668_consen 255 RSVAIAERLAERLREKG---YTVVVRHRDLE 282 (284)
T ss_pred cHHHHHHHHHHHHHhcC---CcceEEcCCCC
Confidence 67888999999999876 66777887764
No 488
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.70 E-value=1.7 Score=47.84 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=41.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhh-ccCCccEEEEcccHHHHHHHHHHHHH
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
...+|.|..|+|||.+.....+..+..+ ......+|+||=|++-+.++.+.+++
T Consensus 10 G~~lieAsAGtGKT~ti~~~~lrll~~~~~~~~~~iLvvTFT~aAt~el~~RIr~ 64 (1087)
T TIGR00609 10 GTFLIEASAGTGKTFTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRG 64 (1087)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCCCChhhEEEEehhHHHHHHHHHHHHH
Confidence 5789999999999998766666666654 23445799999888877777777765
No 489
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=85.70 E-value=3 Score=36.64 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=39.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCch
Q 012427 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~ 141 (464)
..+++++|+-|+|||.. +.+++..+... +- -||=++...|.. +.+-+..+. ..+.+..+++.+-+.
T Consensus 52 annvLL~G~rGtGKSSl-Vkall~~y~~~---GL-RlIev~k~~L~~-l~~l~~~l~-~~~~kFIlf~DDLsF 117 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSL-VKALLNEYADQ---GL-RLIEVSKEDLGD-LPELLDLLR-DRPYKFILFCDDLSF 117 (249)
T ss_pred CcceEEecCCCCCHHHH-HHHHHHHHhhc---Cc-eEEEECHHHhcc-HHHHHHHHh-cCCCCEEEEecCCCC
Confidence 37899999999999975 44455555443 33 466666666643 333333322 235566666666543
No 490
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.61 E-value=7.2 Score=39.70 Aligned_cols=78 Identities=23% Similarity=0.366 Sum_probs=55.3
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeC
Q 012427 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T 179 (464)
+.++||.|+++..++++++.+... ++.+..++|+.+..++. .+.+.+. ...+|+|+|
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~------------------~il~~Fr~G~~~VLVaT 314 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRE------------------SLLNRFQKGQLEILVAT 314 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHH------------------HHHHHHHcCCCeEEEEe
Confidence 457999999999999988888765 78899999987766552 2223333 347999999
Q ss_pred chHHHHhhhcCCCcCCCCccEEEEehhh
Q 012427 180 PGRLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
- .+. .++++.++++||.-+.-
T Consensus 315 d-----v~a--rGIDip~V~~VInyd~P 335 (572)
T PRK04537 315 D-----VAA--RGLHIDGVKYVYNYDLP 335 (572)
T ss_pred h-----hhh--cCCCccCCCEEEEcCCC
Confidence 2 233 24677788888765543
No 491
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.49 E-value=1.7 Score=43.08 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=27.5
Q ss_pred HHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHH
Q 012427 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (464)
Q Consensus 43 ~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~ 94 (464)
+.++|+ .+.|.+.+..+.. ..+.-+++.||||+|||.+. .+++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~--~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIR--RPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHh--cCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 445554 4555555554443 11234789999999999863 3345444
No 492
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=85.25 E-value=0.7 Score=38.53 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.0
Q ss_pred CCEEEECCCCchhHHHhH
Q 012427 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.++++.+|||+|||..+-
T Consensus 4 ~~~ll~GpsGvGKT~la~ 21 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAK 21 (171)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 468999999999998543
No 493
>PHA00729 NTP-binding motif containing protein
Probab=85.23 E-value=2.1 Score=37.23 Aligned_cols=19 Identities=32% Similarity=0.184 Sum_probs=16.1
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012427 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
.++++.|++|+|||..+..
T Consensus 18 ~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4799999999999986554
No 494
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=85.16 E-value=1.4 Score=43.42 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=18.2
Q ss_pred CCCccEEEEehhhHhhhHhhhhhH
Q 012427 195 LEHLCYLVVDETDRLLREAYQAWL 218 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~~~~~~~~~~ 218 (464)
..++++.|+||+|++....|...+
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALL 140 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALL 140 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHh
Confidence 567899999999988666655443
No 495
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.16 E-value=0.7 Score=43.64 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012427 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
..|+|+.+|||+|||+.+-
T Consensus 226 KSNvLllGPtGsGKTllaq 244 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQ 244 (564)
T ss_pred cccEEEECCCCCchhHHHH
Confidence 4679999999999998644
No 496
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=85.12 E-value=1.9 Score=43.16 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHh-hccCCccEEEEc---ccHHHHHHHHH
Q 012427 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVL---PTRDLALQVKD 119 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~-~~~~~~~~lil~---P~~~L~~q~~~ 119 (464)
+-.|.-+++.|++|+|||..++-.+.+.+.+ +. ++++++ |...+..++..
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge----~~lyis~ee~~~~i~~~~~~ 81 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDE----PGVFVTFEESPEDIIRNVAS 81 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCC----CEEEEEccCCHHHHHHHHHH
No 497
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=84.86 E-value=1.6 Score=39.36 Aligned_cols=39 Identities=21% Similarity=0.085 Sum_probs=26.6
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012427 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
-+=+.+|.|+|||..++-++...... +.+++|+----.|
T Consensus 62 ItEiyG~~gsGKT~lal~~~~~aq~~----g~~a~fIDtE~~l 100 (279)
T COG0468 62 ITEIYGPESSGKTTLALQLVANAQKP----GGKAAFIDTEHAL 100 (279)
T ss_pred EEEEecCCCcchhhHHHHHHHHhhcC----CCeEEEEeCCCCC
Confidence 34579999999999877666655443 3378888644333
No 498
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=84.83 E-value=1.9 Score=38.79 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=18.8
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHhhccC
Q 012427 72 LCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~~~l~~~~~~~~~ 100 (464)
.-+.|+||+||.++.-+. .+.+...+.+
T Consensus 113 LSfHG~tGTGKN~Va~ii-A~n~~~~Gl~ 140 (344)
T KOG2170|consen 113 LSFHGWTGTGKNYVAEII-AENLYRGGLR 140 (344)
T ss_pred EEecCCCCCchhHHHHHH-HHHHHhcccc
Confidence 456999999999987763 3444443333
No 499
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=84.76 E-value=1.9 Score=43.55 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=29.7
Q ss_pred cEEE-eCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhc
Q 012427 174 DILV-ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (464)
Q Consensus 174 ~IiI-~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~ 225 (464)
+-+| +-|+++...+.+.+.-+ . ++.+||++.+....-++-...++..+
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~N---P-liLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTEN---P-LILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCC---c-eEEeehhhhhCCCCCCChHHHHHHhc
Confidence 4444 45899999888755332 2 89999999987333333333344433
No 500
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=84.73 E-value=1.1 Score=40.10 Aligned_cols=40 Identities=18% Similarity=-0.022 Sum_probs=26.1
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhh--ccCCccEEEEcc
Q 012427 70 RDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLP 109 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~--~~~~~~~lil~P 109 (464)
.-.=++|+.|+|||-.++-.++...... ...+.+++|+.-
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidT 80 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDT 80 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEES
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeC
Confidence 4456899999999987665555544332 112457899853
Done!