Your job contains 1 sequence.
>012429
MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP
VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG
ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI
NKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEV
LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA
IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ
TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPN
GYVGCMWSICGVHDQVSLYHFALFSFFILFPGWNQYLCLQISPA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012429
(464 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2034675 - symbol:PHR1 "photolyase 1" species:3... 1811 9.1e-187 1
UNIPROTKB|Q6F6A2 - symbol:PHR "Deoxyribodipyrimidine phot... 1478 1.8e-151 1
UNIPROTKB|F1NSZ2 - symbol:LOC424919 "Uncharacterized prot... 1087 4.8e-110 1
ZFIN|ZDB-GENE-040426-1644 - symbol:zgc:66475 "zgc:66475" ... 1034 2.0e-104 1
FB|FBgn0003082 - symbol:phr "photorepair" species:7227 "D... 1000 7.9e-101 1
TIGR_CMR|GSU_2829 - symbol:GSU_2829 "deoxyribodipyrimidin... 993 4.4e-100 1
FB|FBgn0042173 - symbol:CG18853 species:7227 "Drosophila ... 451 1.2e-42 1
TIGR_CMR|SPO_1917 - symbol:SPO_1917 "deoxyribodipyrimidin... 140 1.9e-07 2
TIGR_CMR|CBU_1176 - symbol:CBU_1176 "deoxyribodipyrimidin... 136 7.9e-07 2
TIGR_CMR|BA_3180 - symbol:BA_3180 "deoxyribodipyrimidine ... 124 0.00015 1
FB|FBgn0016054 - symbol:phr6-4 "(6-4)-photolyase" species... 120 0.00048 1
TAIR|locus:2018254 - symbol:CRY2 "cryptochrome 2" species... 118 0.00095 1
>TAIR|locus:2034675 [details] [associations]
symbol:PHR1 "photolyase 1" species:3702 "Arabidopsis
thaliana" [GO:0003904 "deoxyribodipyrimidine photo-lyase activity"
evidence=IEA] [GO:0003913 "DNA photolyase activity"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0009650 "UV protection" evidence=IMP] [GO:0000719
"photoreactive repair" evidence=IMP] InterPro:IPR005101
InterPro:IPR008148 Pfam:PF03441 PROSITE:PS01083 PROSITE:PS01084
InterPro:IPR006050 EnsemblPlants:AT1G12370.2 Pfam:PF00875
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0000719 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0009650 EMBL:AC025416 eggNOG:COG0415 GO:GO:0003913
SUPFAM:SSF52425 SUPFAM:SSF48173 PROSITE:PS51645 KO:K01669
GO:GO:0003904 UniGene:At.70097 EMBL:AF053365 EMBL:X99301
EMBL:AB010875 EMBL:AY034961 EMBL:AY113909 IPI:IPI00531343
IPI:IPI00531380 PIR:T52112 RefSeq:NP_563906.1 RefSeq:NP_849651.1
UniGene:At.19160 ProteinModelPortal:Q9SB00 SMR:Q9SB00 STRING:Q9SB00
PaxDb:Q9SB00 PRIDE:Q9SB00 GeneID:837792 KEGG:ath:AT1G12370
TAIR:At1g12370 HOGENOM:HOG000016456 InParanoid:Q9SB00 OMA:LADNFCF
PhylomeDB:Q9SB00 ProtClustDB:CLSN2687780 Genevestigator:Q9SB00
PANTHER:PTHR10211 TIGRFAMs:TIGR00591 Uniprot:Q9SB00
Length = 496
Score = 1811 (642.6 bits), Expect = 9.1e-187, P = 9.1e-187
Identities = 332/433 (76%), Positives = 379/433 (87%)
Query: 8 STAVQPGRIRVLKQGS---LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQPGRIR+LK+GS LD+ GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV
Sbjct: 4 TVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFL AKARQLGFML+GLR L I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIRRCKD++ R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA +EVL
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R P+A+D
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK TA
Sbjct: 303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
DPLWNASQ+EMVY GKMHGFMRMYWAKKILEWT GPEEAL+I+IYLN+KYEIDGRDP+GY
Sbjct: 363 DPLWNASQLEMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGY 422
Query: 423 VGCMWSICGVHDQ 435
VGCMWSICGVHDQ
Sbjct: 423 VGCMWSICGVHDQ 435
>UNIPROTKB|Q6F6A2 [details] [associations]
symbol:PHR "Deoxyribodipyrimidine photo-lyase"
species:39947 "Oryza sativa Japonica Group" [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0009650 "UV protection"
evidence=IDA] [GO:0003914 "DNA (6-4) photolyase activity"
evidence=IDA] InterPro:IPR005101 InterPro:IPR008148 Pfam:PF03441
PROSITE:PS01083 PROSITE:PS01084 InterPro:IPR006050 Pfam:PF00875
GO:GO:0005634 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
EMBL:DP000086 EMBL:AP008216 GO:GO:0000719 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0009650 eggNOG:COG0415 SUPFAM:SSF52425
SUPFAM:SSF48173 PROSITE:PS51645 KO:K01669 GO:GO:0003904
PANTHER:PTHR10211 TIGRFAMs:TIGR00591 EMBL:AB096003 EMBL:AB099694
EMBL:AB198744 EMBL:AB210109 EMBL:AC131375 RefSeq:NP_001176041.1
UniGene:Os.46278 PDB:3UMV PDBsum:3UMV ProteinModelPortal:Q6F6A2
STRING:Q6F6A2 EnsemblPlants:LOC_Os10g08580.1 GeneID:9272017
KEGG:osa:9272017 Gramene:Q6F6A2 OMA:MWSICGL BRENDA:4.1.99.3
Uniprot:Q6F6A2
Length = 506
Score = 1478 (525.3 bits), Expect = 1.8e-151, P = 1.8e-151
Identities = 280/435 (64%), Positives = 334/435 (76%)
Query: 7 PSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
PS A P R+RV+ G K GPVVYWM RDQR+ DNWAL+HA A + P+AVAF
Sbjct: 18 PSPA-HPSRVRVIHPGG-GKPGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFA 75
Query: 67 LFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
LF + L A+ RQLGF+LRGLR L + + FFLF G + IP VR GAS L
Sbjct: 76 LFPRPFLLSARRRQLGFLLRGLRRLAADAAAR-HLPFFLFTGGPAE-IPALVRRLGASTL 133
Query: 125 VTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKIN 181
V DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+EYSAKT RGK++
Sbjct: 134 VADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKMEYSAKTFRGKVS 193
Query: 182 KLLPEYLIDYPMLEQPIEKWTGTR-QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEV 240
K++ EYL+++P L + W + + +DWD++IA V + VPEI WCE GE+AA+E
Sbjct: 194 KVMDEYLVEFPELPAVVP-WDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEA 252
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALEA+K R L P++
Sbjct: 253 LLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLSPKS 312
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREHIYT+EQ E A+
Sbjct: 313 VDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAK 372
Query: 361 TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPN 420
T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLNDKYEIDGRDP+
Sbjct: 373 THDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPS 432
Query: 421 GYVGCMWSICGVHDQ 435
GYVGCMWSICG+HDQ
Sbjct: 433 GYVGCMWSICGLHDQ 447
>UNIPROTKB|F1NSZ2 [details] [associations]
symbol:LOC424919 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003904 "deoxyribodipyrimidine photo-lyase
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR005101 InterPro:IPR008148 Pfam:PF03441 PROSITE:PS01083
PROSITE:PS01084 InterPro:IPR006050 Pfam:PF00875 GO:GO:0006281
Gene3D:3.40.50.620 InterPro:IPR014729 SUPFAM:SSF52425
SUPFAM:SSF48173 GO:GO:0003904 OMA:LADNFCF PANTHER:PTHR10211
TIGRFAMs:TIGR00591 GeneTree:ENSGT00390000010302 EMBL:AADN02020635
IPI:IPI00595736 Ensembl:ENSGALT00000012188 Uniprot:F1NSZ2
Length = 487
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 212/423 (50%), Positives = 287/423 (67%)
Query: 15 RIRVLKQGSLDKKRGP--VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R R++ +GS + K G ++YWM RDQRV+DNWA ++A A K +P+ V F L FL
Sbjct: 37 RARLVSRGS-ELKEGAECILYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPAFL 95
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R GFMLRGLR + + E I F + G +D +P+FV E G LVTDF PLR
Sbjct: 96 DATIRHYGFMLRGLREVAKECAE-LDIPFHVLLGCPKDVLPSFVVEHGVGGLVTDFCPLR 154
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ +++ R+ + V +VDAHN+VP WVAS K EYSA+T+R KI+ LPE+L ++P
Sbjct: 155 VPRQWVEEVKERLPEDVPFAQVDAHNIVPCWVASPKQEYSARTIRAKIHSQLPEFLTEFP 214
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+ + + I WD+ ++ L+ V E+ W G A + +L+ F+T+R
Sbjct: 215 PVIRHPHPPPNPPEPIAWDACYSS-LQVDRTVTEVAWATPGTAAGLAMLQS----FITER 269
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
LK++ + RN+P K ALS LSP+ HFGQ+S QR LE +K R++ E++D F+EE +VRR
Sbjct: 270 LKSFGSQRNDPNKA-ALSNLSPWFHFGQVSTQRAILEVQKHRRVYKESVDAFVEEAVVRR 328
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
ELA+NFC+Y NYDS++GA++WA+ +LK HA DKR +Y Q E+A T DPLWNA+Q++
Sbjct: 329 ELAENFCYYNENYDSVRGAYDWAQSTLKLHAKDKRPFLYKLPQLEQATTHDPLWNAAQLQ 388
Query: 373 MVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MV GKMHGF+RMYWAKKILEWT PEEAL AIYLND+YE+DG DPNGYVGC+WSICG+
Sbjct: 389 MVREGKMHGFLRMYWAKKILEWTRSPEEALQFAIYLNDRYELDGMDPNGYVGCLWSICGI 448
Query: 433 HDQ 435
HDQ
Sbjct: 449 HDQ 451
>ZFIN|ZDB-GENE-040426-1644 [details] [associations]
symbol:zgc:66475 "zgc:66475" species:7955 "Danio
rerio" [GO:0006281 "DNA repair" evidence=IEA] [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=IEA]
[GO:0003913 "DNA photolyase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR005101
InterPro:IPR008148 Pfam:PF03441 PROSITE:PS01083 PROSITE:PS01084
InterPro:IPR006050 Pfam:PF00875 ZFIN:ZDB-GENE-040426-1644
GO:GO:0006281 Gene3D:3.40.50.620 InterPro:IPR014729 eggNOG:COG0415
SUPFAM:SSF52425 SUPFAM:SSF48173 KO:K01669 GO:GO:0003904
HOGENOM:HOG000016456 PANTHER:PTHR10211 TIGRFAMs:TIGR00591
GeneTree:ENSGT00390000010302 EMBL:CU855922 EMBL:BC054710
IPI:IPI00500266 RefSeq:NP_957358.1 UniGene:Dr.76607 STRING:Q7SYI9
Ensembl:ENSDART00000077278 GeneID:394039 KEGG:dre:394039
HOVERGEN:HBG008186 InParanoid:Q7SYI9 OrthoDB:EOG42BX8G
NextBio:20815001 Uniprot:Q7SYI9
Length = 516
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 197/422 (46%), Positives = 282/422 (66%)
Query: 15 RIRVLKQGSLDKKRGP-VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R L K+ V+YWM RDQR++DNWALI++ A +P+ + F L +FL
Sbjct: 56 RLRYLSDTQKVKQSSQGVLYWMSRDQRIQDNWALIYSQQLALAEKLPLHICFCLVPKFLD 115
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A RQ FML+GL+ + + + + I F L GE N+P FV+ +VTDF+PLR
Sbjct: 116 ATYRQYAFMLKGLQEVVKECK-SLDIEFHLLSGEPVHNLPAFVKSWNIGAVVTDFNPLRI 174
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ D + + + +VDAHNVVP W AS KLEY A+T+RGKI K L E+L D P+
Sbjct: 175 SLQWIDTVKKHLPSDIPFIQVDAHNVVPCWEASTKLEYGARTIRGKITKHLQEFLTDMPL 234
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
++ + + IDW+ ++++ L V E+ W + G M +L + F+ +RL
Sbjct: 235 VDTHPYCASRAAKIIDWEEVLSS-LEVDHNVCEVEWAQPGTTGGMFML----ESFIDQRL 289
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ T RNNP A+S LSP++H GQ+SAQR ++ ++ +K E++ +F+EE++VRRE
Sbjct: 290 HIFATHRNNP-NSDAVSHLSPWIHAGQLSAQRVVMQVKR-KKNASESVASFIEEIVVRRE 347
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEM 373
LADNFCFY NYD++ GA++WA+K+L++HA D+R+++YTK++ E A+T D LWNA+Q ++
Sbjct: 348 LADNFCFYNQNYDNISGAYDWAKKTLQEHAKDRRQYLYTKKELESAETHDQLWNAAQRQL 407
Query: 374 VYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVH 433
+ GKMHGF+RMYWAKKILEWT PEEAL+IAIYLND+ +DG DPNGYVGCMWSICG+H
Sbjct: 408 LLEGKMHGFLRMYWAKKILEWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWSICGIH 467
Query: 434 DQ 435
DQ
Sbjct: 468 DQ 469
>FB|FBgn0003082 [details] [associations]
symbol:phr "photorepair" species:7227 "Drosophila
melanogaster" [GO:0006281 "DNA repair" evidence=ISS] [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=ISS;NAS]
InterPro:IPR005101 InterPro:IPR008148 Pfam:PF03441 PROSITE:PS01083
PROSITE:PS01084 InterPro:IPR006050 Pfam:PF00875 GO:GO:0006281
Gene3D:3.40.50.620 InterPro:IPR014729 SUPFAM:SSF52425
SUPFAM:SSF48173 GO:GO:0003904 PANTHER:PTHR10211 TIGRFAMs:TIGR00591
FlyBase:FBgn0003082 ChiTaRS:phr EMBL:D26021 PIR:S52047
ProteinModelPortal:Q24443 STRING:Q24443 PRIDE:Q24443
InParanoid:Q24443 ArrayExpress:Q24443 Bgee:Q24443 Uniprot:Q24443
Length = 640
Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
Identities = 209/425 (49%), Positives = 275/425 (64%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 184 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 243
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 244 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLR 302
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL ++P
Sbjct: 303 LPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFP 362
Query: 193 -MLEQPIEKWTGTRQ--SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
++ P TG + ++DW + A+ L+ EV E+ W + G AA + L F
Sbjct: 363 PVVRHP--HGTGCKNVNTVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FC 415
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
++RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE I
Sbjct: 416 SRRLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAI 474
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VRRELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D LWN++
Sbjct: 475 VRRELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSA 534
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
Q+++V GKMHGF+RMYWAKKILEWT PE AL AI LNDKY +DGRDPNGYVGCMWSI
Sbjct: 535 QLQLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSI 594
Query: 430 CGVHD 434
GVHD
Sbjct: 595 GGVHD 599
>TIGR_CMR|GSU_2829 [details] [associations]
symbol:GSU_2829 "deoxyribodipyrimidine photolyase,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR005101
InterPro:IPR008148 Pfam:PF03441 PROSITE:PS01083 InterPro:IPR006050
Pfam:PF00875 GO:GO:0006281 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.40.50.620 InterPro:IPR014729 SUPFAM:SSF52425
SUPFAM:SSF48173 KO:K01669 GO:GO:0003904 HOGENOM:HOG000016456
OMA:LADNFCF PANTHER:PTHR10211 TIGRFAMs:TIGR00591 RefSeq:NP_953872.1
ProteinModelPortal:Q749B5 GeneID:2686850 KEGG:gsu:GSU2829
PATRIC:22028503 ProtClustDB:CLSK2761237
BioCyc:GSUL243231:GH27-2781-MONOMER Uniprot:Q749B5
Length = 461
Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
Identities = 207/423 (48%), Positives = 263/423 (62%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
GRIR L QG + GPV+YWM RDQRV DNWALIHA A + P+ V F L +FLG
Sbjct: 4 GRIRSLLQGG-EATAGPVIYWMSRDQRVADNWALIHAQKLALARSAPLGVLFCLAPRFLG 62
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A ARQ FML+GL ++ + I FFL G+ + + F R S LVTDF PLR
Sbjct: 63 ATARQYRFMLKGLEQVRAALNR-LDIPFFLVTGDPKGAVAAFTRRHRVSYLVTDFDPLRV 121
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
R K ++ +S + EVDAHN+VP W+ S++ E+ A T+R KI++LLP+++ +P
Sbjct: 122 KREWKRQVAGEIS--IPFDEVDAHNIVPCWITSQRQEWGAYTIRPKIHRLLPDFMEPFPP 179
Query: 194 LEQPIEKWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
L++ W G S +W + VPE+ W SGE+AA L FL
Sbjct: 180 LQRHPFPWQGALPSDAEWRETFTG-MTLDESVPEVSWLASGEEAAQAALAR----FLEDG 234
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
L Y T RNNP SGLSP+LHFGQ+SAQR A +A A E+ D FLEELIVRR
Sbjct: 235 LAGYATRRNNPAV-MGQSGLSPWLHFGQLSAQRVA-QAAFAAAAPIESRDAFLEELIVRR 292
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQME 372
ELADNFC+Y YD G EWA+++L H D R Y + E+ QT D LWNA+Q+E
Sbjct: 293 ELADNFCYYNDAYDRFDGFPEWAQRTLNRHRHDPRPQCYEHDVLEQGQTHDSLWNAAQLE 352
Query: 373 MVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGV 432
MV G+MHG++RMYWAKK+LEWT+ PE+AL IAI LND+Y++DGRDPNGY G WSI GV
Sbjct: 353 MVRWGRMHGYLRMYWAKKLLEWTSSPEDALMIAIQLNDRYQLDGRDPNGYAGIAWSIGGV 412
Query: 433 HDQ 435
HD+
Sbjct: 413 HDR 415
>FB|FBgn0042173 [details] [associations]
symbol:CG18853 species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=IEA]
InterPro:IPR005101 InterPro:IPR008148 Pfam:PF03441 PROSITE:PS01084
EMBL:AE013599 GO:GO:0006281 eggNOG:COG0415 SUPFAM:SSF48173
KO:K01669 GO:GO:0003904 Gene3D:2.40.30.70 InterPro:IPR001378
InterPro:IPR023370 Pfam:PF01980 SUPFAM:SSF118196 PANTHER:PTHR10211
GeneTree:ENSGT00390000010302 EMBL:BT031305 RefSeq:NP_724615.1
UniGene:Dm.6978 SMR:A1Z758 EnsemblMetazoa:FBtr0089426 GeneID:246511
KEGG:dme:Dmel_CG18853 UCSC:CG18853-RA FlyBase:FBgn0042173
InParanoid:A1Z758 OrthoDB:EOG4M0CH8 GenomeRNAi:246511
NextBio:842749 Uniprot:A1Z758
Length = 330
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 79/120 (65%), Positives = 93/120 (77%)
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMV 374
ADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D LWN++Q+++V
Sbjct: 170 ADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLV 229
Query: 375 YNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHD 434
GKMHGF+RMYWAKKILEWT PE AL AI LNDKY +DGRDPNGYVGCMWSI GVHD
Sbjct: 230 REGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHD 289
>TIGR_CMR|SPO_1917 [details] [associations]
symbol:SPO_1917 "deoxyribodipyrimidine photolyase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR002081
InterPro:IPR005101 InterPro:IPR018394 Pfam:PF03441 PRINTS:PR00147
PROSITE:PS00394 InterPro:IPR006050 Pfam:PF00875 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006281 GO:GO:0018298
Gene3D:3.40.50.620 InterPro:IPR014729 SUPFAM:SSF52425
SUPFAM:SSF48173 HOGENOM:HOG000245621 OMA:CKVDFWL KO:K01669
GO:GO:0003904 RefSeq:YP_167152.1 ProteinModelPortal:Q5LS53
GeneID:3192692 KEGG:sil:SPO1917 PATRIC:23377163
ProtClustDB:CLSK933677 Uniprot:Q5LS53
Length = 481
Score = 140 (54.3 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 58/213 (27%), Positives = 94/213 (44%)
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P +P E W G+ DW + A +R+GA V GE AA+E L D F+
Sbjct: 167 PARVRPPEAWPGSEALSDWG--LGAPMRRGAAVVATHQAP-GEAAALERL----DRFIAT 219
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
+ Y R+ P S LS L G+I + A +A + +TFL++L V
Sbjct: 220 GIGQYDACRDLPAGD-GTSTLSDALSLGEIGPRTLWHRAGEAAHKGAQGAETFLKQL-VW 277
Query: 312 RELADNFCFYQPNY--DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
R+ A + ++ P+ ++ + WE + A+D + + + + +T PL +A+
Sbjct: 278 RDFAYHLMYHTPHLLSENWRPGWE-----VFPWATDPADPGFVA--WTRGRTGVPLVDAA 330
Query: 370 QMEMVYNGKMHGFMRM----YWAKKIL-EWTTG 397
EM G+MH RM Y K ++ W G
Sbjct: 331 MREMYVTGRMHNRARMIAASYLTKHLMVHWKLG 363
Score = 54 (24.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 25/103 (24%), Positives = 42/103 (40%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR-GLRLL 89
++YW+ RD R+ D+ L A PV F + D+ + A F L GL
Sbjct: 7 IIYWLRRDLRLADHPGLAAAAASGR----PVVPVF-IHDESVAALGAAPAFRLGLGLERF 61
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSP 130
+ + L L +G A + + E GA + +++P
Sbjct: 62 GATLGDMGSRLI-LRRGSAPAVLQALIAETGAGAVWWTREYTP 103
>TIGR_CMR|CBU_1176 [details] [associations]
symbol:CBU_1176 "deoxyribodipyrimidine photolyase - class
I" species:227377 "Coxiella burnetii RSA 493" [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR002081
InterPro:IPR005101 InterPro:IPR018394 Pfam:PF03441 PRINTS:PR00147
PROSITE:PS00394 PROSITE:PS00691 InterPro:IPR006050 Pfam:PF00875
GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0018298
Gene3D:3.40.50.620 InterPro:IPR014729 SUPFAM:SSF52425
SUPFAM:SSF48173 HOGENOM:HOG000245621 OMA:CKVDFWL KO:K01669
GO:GO:0003904 RefSeq:NP_820171.1 HSSP:P00914
ProteinModelPortal:Q83CE4 GeneID:1209079 KEGG:cbu:CBU_1176
PATRIC:17931093 ProtClustDB:CLSK2394345
BioCyc:CBUR227377:GJ7S-1162-MONOMER Uniprot:Q83CE4
Length = 472
Score = 136 (52.9 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 54/177 (30%), Positives = 84/177 (47%)
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC-- 286
W + GE A VLK F+ + LKNYP R+ P + S LSPYLHFG+IS ++
Sbjct: 195 W-KPGEKNAQIVLKK----FIKENLKNYPAHRDRP-DISSTSHLSPYLHFGEISIRQVWT 248
Query: 287 AL-EARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
A+ +A K +A D FL +LI R F +Y + G + + D+
Sbjct: 249 AITQATIQDKNLQKAADVFLRQLIWRE-----FAYYLLWHFPQMGRSNFRNQF--DNFKW 301
Query: 346 KREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM----YWAKKIL-EWTTG 397
K+ + + ++K T P+ +A E+ G MH +RM + K ++ +W G
Sbjct: 302 KKNKNWLRA-WQKGLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVKDLMIDWREG 357
Score = 52 (23.4 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAV 63
++W +D R+ DN AL+ A A+ + +P+ +
Sbjct: 4 IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYI 34
>TIGR_CMR|BA_3180 [details] [associations]
symbol:BA_3180 "deoxyribodipyrimidine photolyase family
protein" species:198094 "Bacillus anthracis str. Ames" [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR002081
InterPro:IPR005101 Pfam:PF03441 PRINTS:PR00147 InterPro:IPR006050
Pfam:PF00875 EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0006281 GO:GO:0018298
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0003913 SUPFAM:SSF52425
SUPFAM:SSF48173 HOGENOM:HOG000245621 KO:K01669 RefSeq:NP_845490.2
RefSeq:YP_029213.1 ProteinModelPortal:Q81NL2 DNASU:1086563
EnsemblBacteria:EBBACT00000013148 EnsemblBacteria:EBBACT00000022838
GeneID:1086563 GeneID:2852147 KEGG:ban:BA_3180 KEGG:bat:BAS2956
PATRIC:18783980 ProtClustDB:CLSK584502
BioCyc:BANT260799:GJAJ-3018-MONOMER Uniprot:Q81NL2
Length = 476
Score = 124 (48.7 bits), Expect = 0.00015, P = 0.00015
Identities = 96/422 (22%), Positives = 172/422 (40%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL A VPV V F +G+ ++ ++ + +++ +
Sbjct: 8 MFQKDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--MGSASKW--WLHHAIIDVKKQL 61
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTI 151
E L + +G ++ I + V + G + + + + P R K K+ +
Sbjct: 62 EALGSTLI-IRKGSTQEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGMIC- 119
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE-QPIEKWTGTRQSIDW 210
E ++H ++ WV +K K N + +I P+ + Q I+ S+
Sbjct: 120 KEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQ-VIHKPISKVQSIKGGNSLPVSLSV 178
Query: 211 DSI-IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
+ + + + + I W E E+ A + K F + +L +Y R+ P A
Sbjct: 179 SELHLLPTIPWTSHMESI-W-EPTEEGAYKTWKE----FFSSKLASYSEGRDFP-NQNAH 231
Query: 270 SGLSPYLHFGQISAQRCA--LEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
S L+PYL FGQIS + L + C + +++F+ +LI R F +Y
Sbjct: 232 SMLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWRE-----FSYYLL- 285
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMR 384
Y A++ KS + + E + ++K T P +A E+ G MH R
Sbjct: 286 YHYPFTAYKPLNKSFEHFPWNNEEELL--RVWQKGDTGYPFIDAGMRELWQTGFMHNRTR 343
Query: 385 MYWAKKILEWTTGP-EEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQVSLYHFAL 443
M A +++ P +E A + D +D N +G W + G S Y F +
Sbjct: 344 MAVASFLVKHLLIPWQEG---AKWFMDTL-LDADIANNTMGWQW-VAGSGADASPY-FRI 397
Query: 444 FS 445
F+
Sbjct: 398 FN 399
>FB|FBgn0016054 [details] [associations]
symbol:phr6-4 "(6-4)-photolyase" species:7227 "Drosophila
melanogaster" [GO:0006281 "DNA repair" evidence=ISS] [GO:0003914
"DNA (6-4) photolyase activity" evidence=ISS;NAS]
InterPro:IPR005101 Pfam:PF03441 InterPro:IPR006050 Pfam:PF00875
EMBL:AE014134 GO:GO:0006281 Gene3D:3.40.50.620 InterPro:IPR014729
eggNOG:COG0415 KO:K02295 GO:GO:0003913 SUPFAM:SSF52425
SUPFAM:SSF48173 GeneTree:ENSGT00500000044813 OMA:CLSARTF
EMBL:BT044074 RefSeq:NP_477188.1 RefSeq:NP_724274.1 UniGene:Dm.7857
SMR:Q0E8P0 STRING:Q0E8P0 EnsemblMetazoa:FBtr0081404
EnsemblMetazoa:FBtr0081405 GeneID:35322 KEGG:dme:Dmel_CG2488
UCSC:CG2488-RA CTD:35322 FlyBase:FBgn0016054 InParanoid:Q0E8P0
OrthoDB:EOG49W0WG GenomeRNAi:35322 NextBio:792949 Uniprot:Q0E8P0
Length = 540
Score = 120 (47.3 bits), Expect = 0.00048, P = 0.00048
Identities = 88/385 (22%), Positives = 158/385 (41%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQAN----KNNV-PVAVAFNLFDQFLGAKARQ 78
+D +R +V+W + R+ DN AL H AN K V P+ + ++ A +
Sbjct: 1 MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANR 60
Query: 79 LGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLREIRR 136
F+ + L L + + LF + +G+ + P + +L TD P R
Sbjct: 61 WRFLQQTLEDLDNQLRKLNSRLFVV-RGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRD 119
Query: 137 CK-DKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYSAKTLR---G-----KINKLL-- 184
K+ ++ V + +H + P V ++ L + T + G K+ K+L
Sbjct: 120 AAVQKLAK--AEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGV 177
Query: 185 PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCE--SGEDAAMEVLK 242
PE L + P P + + S +D L K E E+G + GE A+ ++
Sbjct: 178 PEKLKNMPT---PPKDEVEQKDSAAYDCPTMKQLVKRPE--ELGPNKFPGGETEALRRME 232
Query: 243 GS-KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
S KD R + P N L+P + + LSPYL FG +SA+ + ++ K P+
Sbjct: 233 ESLKDEIWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHS 290
Query: 302 DTFLEEL--IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
+ + ++ RE +PN+D + G + ++H +H+ E +
Sbjct: 291 QPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHP----DHL---EAWTHG 343
Query: 360 QTADPLWNASQMEMVYNGKMHGFMR 384
+T P +A ++ G +H R
Sbjct: 344 RTGYPFIDAIMRQLRQEGWIHHLAR 368
>TAIR|locus:2018254 [details] [associations]
symbol:CRY2 "cryptochrome 2" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009882 "blue light photoreceptor activity" evidence=ISS]
[GO:0005773 "vacuole" evidence=IDA] [GO:0042802 "identical protein
binding" evidence=IPI] [GO:0042803 "protein homodimerization
activity" evidence=IPI] [GO:0009414 "response to water deprivation"
evidence=IGI] [GO:0010118 "stomatal movement" evidence=IGI]
[GO:0009909 "regulation of flower development" evidence=IDA]
[GO:0009911 "positive regulation of flower development"
evidence=IMP] [GO:0006338 "chromatin remodeling" evidence=IMP]
[GO:0010617 "circadian regulation of calcium ion oscillation"
evidence=IMP] [GO:0010075 "regulation of meristem growth"
evidence=IGI] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0009416 "response to light stimulus" evidence=IEP] [GO:0042744
"hydrogen peroxide catabolic process" evidence=RCA] [GO:0009637
"response to blue light" evidence=IMP] [GO:0009638 "phototropism"
evidence=IGI] InterPro:IPR002081 InterPro:IPR005101
InterPro:IPR018394 Pfam:PF03441 PRINTS:PR00147 PROSITE:PS00394
PROSITE:PS00691 InterPro:IPR006050 Pfam:PF00875 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0005773
GO:GO:0009414 GO:GO:0006281 GO:GO:0010118 GO:GO:0006338
EMBL:AC000104 GO:GO:0018298 GO:GO:0009911 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0010075 eggNOG:COG0415 GO:GO:0009882
GO:GO:0003913 SUPFAM:SSF52425 SUPFAM:SSF48173 PROSITE:PS51645
ProtClustDB:CLSN2681786 GO:GO:0010617 InterPro:IPR014134
TIGRFAMs:TIGR02766 EMBL:U62549 EMBL:U62550 EMBL:X99061 EMBL:U43397
EMBL:AY057440 EMBL:AY057441 EMBL:AY057442 EMBL:EU351967
EMBL:EU351968 EMBL:EU351969 EMBL:EU351970 EMBL:EU351971
EMBL:EU351972 EMBL:EU351973 EMBL:EU351974 EMBL:EU351975
EMBL:EU351976 EMBL:EU351977 EMBL:EU351978 EMBL:EU351979
EMBL:EU351980 EMBL:EU351981 EMBL:EU351982 EMBL:EU351983
EMBL:EU351984 EMBL:EU351985 EMBL:EU351986 EMBL:EU351987
EMBL:EU351988 EMBL:EU351989 EMBL:EU351990 EMBL:EU351991
EMBL:EU351993 EMBL:EU351992 EMBL:EU351994 EMBL:EU351995
EMBL:EU351996 EMBL:EU351997 EMBL:EU351998 EMBL:BT008576
EMBL:BT008648 EMBL:AY576241 EMBL:AY576242 EMBL:AY576243
EMBL:AY576244 EMBL:AY576245 EMBL:AY576246 EMBL:AY576247
EMBL:AY576248 EMBL:AY576249 EMBL:AY576250 EMBL:AY576251
EMBL:AY576252 EMBL:AY576253 EMBL:AY576254 EMBL:AY576255
EMBL:AY576256 EMBL:AY576257 EMBL:AY576258 EMBL:AY576259
EMBL:AY576260 EMBL:AY576261 EMBL:AY576262 EMBL:AY576263
EMBL:AY576264 EMBL:AY576265 EMBL:AY576266 EMBL:AY576267
EMBL:AY576268 EMBL:AY576269 EMBL:AY576270 EMBL:AY576271
EMBL:AK220946 IPI:IPI00528436 PIR:A86176 PIR:S71221
RefSeq:NP_171935.1 RefSeq:NP_849588.1 UniGene:At.21976
ProteinModelPortal:Q96524 SMR:Q96524 DIP:DIP-33589N IntAct:Q96524
MINT:MINT-207946 STRING:Q96524 PaxDb:Q96524 PRIDE:Q96524
EnsemblPlants:AT1G04400.1 EnsemblPlants:AT1G04400.2 GeneID:839529
KEGG:ath:AT1G04400 TAIR:At1g04400 InParanoid:Q96524 KO:K12119
OMA:GDLANNQ PhylomeDB:Q96524 Genevestigator:Q96524
GermOnline:AT1G04400 GO:GO:0009638 Uniprot:Q96524
Length = 612
Score = 118 (46.6 bits), Expect = 0.00095, P = 0.00095
Identities = 96/397 (24%), Positives = 165/397 (41%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV-PVAVAFNLFD-QFLGAKARQLGF 81
+DKK + W RD R+ DN AL A A++ +V PV + + QF +A + +
Sbjct: 3 MDKK---TIVWFRRDLRIEDNPALAAA---AHEGSVFPVFIWCPEEEGQFYPGRASRW-W 55
Query: 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIR--RC 137
M + L L ++++ L + I + +R GA+ +V + + P+ +R
Sbjct: 56 MKQSLAHLSQSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVW-VASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ 196
K+K+ R +++ + + W + EK + + K L + I+ ML
Sbjct: 116 KEKLVER---GISVQSYNGDLLYEPWEIYCEKGK-PFTSFNSYWKKCL-DMSIESVMLPP 170
Query: 197 P--IEKWTGTRQSIDWDSIIAAV-LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
P + T ++I W I + L AE P + F+ K+L
Sbjct: 171 PWRLMPITAAAEAI-WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQL 229
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQ---RCA-----LEARKARKLCPEAIDTFL 305
+Y + + + + S LSPYLHFG+IS + +CA + AR E+ D FL
Sbjct: 230 IDYAKN-SKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFL 288
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
+ +R E + CF P + + R D DK + + + +T PL
Sbjct: 289 RGIGLR-EYSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFK------AWRQGRTGYPL 340
Query: 366 WNASQMEMVYNGKMHGFMRMY---WAKK--ILEWTTG 397
+A E+ G MH +R+ +A K +L W G
Sbjct: 341 VDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWG 377
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.432 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 464 464 0.00097 118 3 11 22 0.36 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 628 (67 KB)
Total size of DFA: 328 KB (2165 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.85u 0.19s 38.04t Elapsed: 00:00:02
Total cpu time: 37.86u 0.19s 38.05t Elapsed: 00:00:02
Start: Mon May 20 20:58:12 2013 End: Mon May 20 20:58:14 2013