BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012429
(464 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SB00|PHR_ARATH Deoxyribodipyrimidine photo-lyase OS=Arabidopsis thaliana GN=PHR1
PE=2 SV=1
Length = 496
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/433 (76%), Positives = 379/433 (87%), Gaps = 6/433 (1%)
Query: 8 STAVQPGRIRVLKQGS---LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQPGRIR+LK+GS LD+ GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV
Sbjct: 4 TVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFL AKARQLGFML+GLR L I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIRRCKD++ R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA +EVL
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R P+A+D
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK TA
Sbjct: 303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362
Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
DPLWNASQ+EMVY GKMHGFMRMYWAKKILEWT GPEEAL+I+IYLN+KYEIDGRDP+GY
Sbjct: 363 DPLWNASQLEMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGY 422
Query: 423 VGCMWSICGVHDQ 435
VGCMWSICGVHDQ
Sbjct: 423 VGCMWSICGVHDQ 435
>sp|Q6F6A2|PHR_ORYSJ Deoxyribodipyrimidine photo-lyase OS=Oryza sativa subsp. japonica
GN=PHR PE=1 SV=1
Length = 506
Score = 537 bits (1384), Expect = e-152, Method: Compositional matrix adjust.
Identities = 277/446 (62%), Positives = 330/446 (73%), Gaps = 16/446 (3%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
IYT+EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 362 IYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 421
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQ 435
DKYEIDGRDP+GYVGCMWSICG+HDQ
Sbjct: 422 DKYEIDGRDPSGYVGCMWSICGLHDQ 447
>sp|P34205|PHR_CARAU Deoxyribodipyrimidine photo-lyase OS=Carassius auratus GN=phr PE=2
SV=1
Length = 556
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/417 (48%), Positives = 282/417 (67%), Gaps = 13/417 (3%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ 78
+KQGS +YWM RDQRV+DNWALI+A A +P+ + F L ++L A RQ
Sbjct: 103 IKQGS-----DGFLYWMSRDQRVQDNWALIYAQQLALAEKLPLHICFCLVPRYLDATYRQ 157
Query: 79 LGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCK 138
FML+GL+ + + + + I F L GE N+P+FV + +VTDF+PLR +
Sbjct: 158 YAFMLKGLQEVAKECK-SLDIQFHLLSGEPGQNLPSFVEKWKFGAVVTDFNPLRIPLQWI 216
Query: 139 DKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI 198
+ + + V +VDAHNVVP W AS KLEY A+T+RGKI KLLPE+L + P+++
Sbjct: 217 ETVKKHLPADVPFIQVDAHNVVPCWEASGKLEYGARTIRGKITKLLPEFLTEIPLVDTHP 276
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ + +DW+ ++++ L V E+ W + G M +L + F+ +RL+ + T
Sbjct: 277 HSASRAAEPVDWEEVLSS-LEVERSVGEVDWAQPGTSGGMNML----ESFIDQRLRLFAT 331
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
RNNP ALS LSP++H GQ+SAQR + ++ K E++ +F+EEL+VRRELADNF
Sbjct: 332 HRNNP-NYDALSHLSPWIHTGQLSAQRVVKQVKR-EKNASESVASFIEELVVRRELADNF 389
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGK 378
CFY P+YD++ GA++WA+K+L+DHA D R+++YTKEQ E A+T D LWNA+Q ++V GK
Sbjct: 390 CFYNPSYDNISGAYDWAKKTLQDHAKDSRQYLYTKEQLENAKTHDQLWNAAQRQLVSEGK 449
Query: 379 MHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQ 435
MHGF+RMYWAKKILEWT PEEAL+IAIYLND+ +DG DPNGYVGCMWSICG+HDQ
Sbjct: 450 MHGFLRMYWAKKILEWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWSICGIHDQ 506
>sp|Q28811|PHR_POTTR Deoxyribodipyrimidine photo-lyase OS=Potorous tridactylus GN=PHR
PE=2 SV=1
Length = 532
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/426 (48%), Positives = 276/426 (64%), Gaps = 16/426 (3%)
Query: 15 RIRVLKQG-SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R++ Q L + VYWM RDQRV+DNWA ++A A K +P+ V F L FLG
Sbjct: 82 RVRLISQDCHLQDQSQAFVYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLG 141
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FMLRGL + E+ I F L G +D +P FV+ G +VTDFSPL
Sbjct: 142 ATIRHYDFMLRGLEEVAEECEK-LCIPFHLLLGLPKDVLPAFVQTHGIGGIVTDFSPLLH 200
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + + V +VDAHN+VP WVAS+K EY A+T+R KI+ LP +L ++P
Sbjct: 201 HTQWVKDVQDALPRQVPFVQVDAHNIVPCWVASDKQEYGARTIRHKIHDRLPHFLTEFP- 259
Query: 194 LEQPI--EKWTGTRQS--IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
P+ +T Q+ +DW+ A L+ V E+ W + G + + +L+ F+
Sbjct: 260 ---PVICHPYTSNVQAEPVDWNGCRAG-LQVDRSVKEVSWAKPGTASGLTMLQS----FI 311
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
+RL + +DRNNP K ALS LSP+ HFGQ+S QR LE +K R P+++ F+EE +
Sbjct: 312 AERLPYFGSDRNNPNKD-ALSNLSPWFHFGQVSVQRAILEVQKHRSRYPDSVTNFVEEAV 370
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 369
VRRELADNFCFY NYD L+GA++WA+ +L+ HA DKR H+Y+ EQ E +T DPLWNA+
Sbjct: 371 VRRELADNFCFYNKNYDKLEGAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAA 430
Query: 370 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 429
QM+ V GKMHGF+RMYWAKKILEWT PEEAL AIYLND++++DG DPNGYVGCMWSI
Sbjct: 431 QMQTVKEGKMHGFLRMYWAKKILEWTRSPEEALEFAIYLNDRFQLDGWDPNGYVGCMWSI 490
Query: 430 CGVHDQ 435
CG+HDQ
Sbjct: 491 CGIHDQ 496
>sp|P58818|PHR_METTM Deoxyribodipyrimidine photo-lyase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=phr PE=1 SV=2
Length = 444
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 171/449 (38%), Positives = 236/449 (52%), Gaps = 65/449 (14%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ RIR L + V+YWM R N AL +A++ AN + P+ V F L D+
Sbjct: 2 IHDERIRSLNTEKPARDGKYVIYWMQASVRAHWNHALEYAIETANSLHKPLIVIFGLTDE 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A +R F++ GLR ++ + + + GA L+V + P
Sbjct: 62 FPNANSRHYRFLIEGLR-----------------------DVGDALMKRGARLVVENERP 98
Query: 131 LREIRRCKDKICNRVSD------------------SVTIHEVDAHNVVPVWVASEKLEYS 172
+ R D+ V D V + +V+++ +VPV AS K EYS
Sbjct: 99 PSAVMRYSDEASAVVVDRGYLDIQKEWVDELAESLHVPLMQVESNVIVPVETASPKEEYS 158
Query: 173 AKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD-----SIIAAVLRKGAEVPEI 227
A T R KI + L +++ P+++ S+D D + + R E+ E
Sbjct: 159 AGTFRPKITRELERFMV-------PLKERRLAVDSLDLDPGPDLNDVTGKFRASEEL-EP 210
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G A+ + D FL+++L + RN+P+K LS +SPYLHFG IS A
Sbjct: 211 SIFSGGASEAIRLF----DEFLSEKLACFEKYRNDPVK-NCLSNMSPYLHFGHISPLYLA 265
Query: 288 LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
++A K + CPE FLEELIVRREL+ NF Y NY S++ EWA+K+L +HA D +
Sbjct: 266 MKASKTGE-CPE----FLEELIVRRELSMNFVHYSDNYSSIRCLPEWAQKTLMEHARDPK 320
Query: 348 EHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIY 407
E+ YT +FE+A+T DP WNA+Q EMV GKMHG+MRMYW KKILEWT PE A IAIY
Sbjct: 321 EYEYTLREFEEARTHDPYWNAAQKEMVITGKMHGYMRMYWGKKILEWTDHPERAYDIAIY 380
Query: 408 LNDKYEIDGRDPNGYVGCMWSICGVHDQV 436
LNDKYEIDGRDPNG+ G W G HD+
Sbjct: 381 LNDKYEIDGRDPNGFTGVAWCF-GKHDRA 408
>sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=phr PE=3 SV=2
Length = 445
Score = 258 bits (658), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 170/437 (38%), Positives = 236/437 (54%), Gaps = 41/437 (9%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ RIR L D + VVYWM R N AL +A++ AN P+ V F L D
Sbjct: 2 IHAERIRNLNGEEPDLRGSYVVYWMQASVRSHWNHALEYAIETANSLKKPLIVVFGLTDD 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEET-FQILFFLFQGEAEDNIPNFVRE--CGASLLVTD 127
F A +R F++ GLR ++ N+ E Q++ D+ P+ + + A+ VTD
Sbjct: 62 FPNANSRHYRFLIEGLRDVRSNLRERGIQLVV------ERDSPPSVLLKYADDAAAAVTD 115
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
L + D+ + + + +V+++ +VPV AS+K EYSA T + KI + L +
Sbjct: 116 RGYLDIQKEWVDEAAGALH--IPLTQVESNVIVPVETASDKEEYSAGTFKPKIKRHLKRF 173
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPE-IGWCESGEDAAMEVLKGSKD 246
++ P+ T S+D L G E + + + ED V +G
Sbjct: 174 MV-------PLRMRTLKMDSLD--------LEPGPEFEDAVRDFRAPEDLEPSVFRGGTS 218
Query: 247 G-------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
FL ++L+ + RN+P+K LS +SPYLHFGQIS AL A +A + CPE
Sbjct: 219 TALSIFSEFLREKLECFERYRNDPVK-NCLSNMSPYLHFGQISPLYLALRASEAGE-CPE 276
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
FLEELIVRREL+ NF Y +Y S+ EWA+++L DH +D RE+ Y+ + E A
Sbjct: 277 ----FLEELIVRRELSMNFVHYSDSYSSISCLPEWAQRTLMDHVADPREYEYSLRELESA 332
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDP 419
T DP WNA+Q EMV GKMHG+MRMYW KKILEWT P A IA+YLND+YEIDGRDP
Sbjct: 333 STHDPYWNAAQQEMVITGKMHGYMRMYWGKKILEWTDHPARAYDIALYLNDRYEIDGRDP 392
Query: 420 NGYVGCMWSICGVHDQV 436
NG+ G W G HD+
Sbjct: 393 NGFAGVAWCF-GKHDRA 408
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
E +L ELI RE + +PN + EW + E
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA---------RLEWWNDN 312
Query: 354 EQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 385
E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 313 EKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 39/192 (20%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G GE+A +++ +L + +Y D ++ L A S LSP+LHFG +SA
Sbjct: 195 GLARGGEEAGRKLVTS----WLNGPMADY-EDGHDDLAGDATSRLSPHLHFGTVSAAELV 249
Query: 288 LEARKARKLCPEAIDTFLEELIVR----RELAD----NFCFYQPNYDSLKGAWEWARKSL 339
AR+ L EA F+ +L R + LAD ++ Y+P +D W +
Sbjct: 250 HRAREKGGLGGEA---FVRQLAWRDFHHQVLADRPDASWSDYRPRHD------RWRSDAD 300
Query: 340 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LEW 394
+ HA ++ T PL +A+ ++ + G MH RM A + ++W
Sbjct: 301 EMHA------------WKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLYVDW 348
Query: 395 TTGPEEALAIAI 406
G L + +
Sbjct: 349 REGARHFLDLLV 360
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 151/397 (38%), Gaps = 96/397 (24%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AKARQLGFMLR 84
P+++W RD R+ DN L A Q+ + + F L Q L A AR + ++
Sbjct: 3 APILFWHRRDLRLSDNIGLAAARAQSAQ----LIGLFCLDPQILQSADMAPAR-VAYLQG 57
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSP------------ 130
L+ LQ+ ++ L L QG+ + IP ++ A + D P
Sbjct: 58 CLQELQQRYQQAGSRLLLL-QGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAA 116
Query: 131 -----LREIR------RCKDKICNRVSDSVTIHEVDAHN------VVPVWVASEKLEYSA 173
+R ++ D+I + + +++ N PV +E ++ S
Sbjct: 117 LKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSP 176
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
+ L + P L + P L+Q DWD E G
Sbjct: 177 EQL----TAIAPLLLSELPTLKQ---------LGFDWDGGFP--------------VEPG 209
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E AA+ L+ F + + +Y RN P + SGLSP L FG I ++ A A
Sbjct: 210 ETAAIARLQE----FCDRAIADYDPQRNFPAE-AGTSGLSPALKFGAIGIRQAWRAASAA 264
Query: 294 RKL-----CPEAIDTFLEELIVRRELADNFCFYQPN-----YDSLKGAWEWARKSLKDHA 343
L +I + +EL RE + ++ P+ Y SL + W
Sbjct: 265 HALSRSDEARNSIRVWQQEL-AWREFYQHALYHFPSLADGPYRSLWQQFPW--------- 314
Query: 344 SDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 380
+ RE ++T + +AQT P+ +A+ ++ G MH
Sbjct: 315 -ENREALFTA--WTQAQTGYPIVDAAMRQLTETGWMH 348
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFMLR 84
R VV+W D R+ DN +L A +A + VP+ + L + L A R ++ FMLR
Sbjct: 134 RQAVVHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLR 193
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLL 124
L +L+ ++E+ I ++ E +P ++E GAS L
Sbjct: 194 TLEVLKTDLED-LGIPLWVETVEKRKEVPTKIKELMKSWGASHL 236
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
W GE+ A++ L+ F KRL Y +R+ P S LSPY+ G +S++
Sbjct: 206 WSAIGEEHAIKRLQM----FTKKRLSGYKANRDFP-SITGTSRLSPYIKTGAVSSRSIYY 260
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
A A +TFL+EL R+ FY+P+ + E R+ H D
Sbjct: 261 HILNAEADSYSA-ETFLKEL-AWRDFYRMVHFYEPDCKD-REIMEGYRELNWSHDQDDLT 317
Query: 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+++ +T P+ +A +++ G MH +RM
Sbjct: 318 ------SWKRGETGFPIVDAGMRQLLNEGWMHNRLRM 348
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 38.5 bits (88), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 152/389 (39%), Gaps = 58/389 (14%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF-------DQFLGAKA 76
+DKK + W RD R+ DN AL A + + F +F QF +A
Sbjct: 3 MDKK---TIVWFRRDLRIEDNPALAAAAHEGS--------VFPVFIWCPEEEGQFYPGRA 51
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREI 134
+ +M + L L ++++ L + I + +R GA+ +V + + P+ +
Sbjct: 52 SRW-WMKQSLAHLSQSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLV 110
Query: 135 R--RCKDKICNRVSDSVTIHEVDAHNVVPVW-VASEKLE-------YSAKTLRGKINKLL 184
R K+K+ R +++ + + W + EK + Y K L I ++
Sbjct: 111 RDHTVKEKLVER---GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVM 167
Query: 185 PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
+ P PI T ++I SI L AE P
Sbjct: 168 ----LPPPWRLMPI---TAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKL 220
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ---RCA-----LEARKARKL 296
+ F+ K+L +Y + + + S LSPYLHFG+IS + +CA + AR
Sbjct: 221 LNEFIEKQLIDYAKNSKKVVG-NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSE 279
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
E+ D FL + + RE + CF P + + R D DK + +
Sbjct: 280 GEESADLFLRGIGL-REYSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKF------KAW 331
Query: 357 EKAQTADPLWNASQMEMVYNGKMHGFMRM 385
+ +T PL +A E+ G MH +R+
Sbjct: 332 RQGRTGYPLVDAGMRELWATGWMHNRIRV 360
>sp|Q5ZK35|MET14_CHICK Methyltransferase-like protein 14 OS=Gallus gallus GN=METTL14 PE=2
SV=1
Length = 459
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 132 NFIRDVGLADRFEEYPKLRELIRLKDEL------------ISKSNTPPMYLQADLEAFDI 179
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
+ L+ K + +L LE P+E++ T + WD I+ E+ EI
Sbjct: 180 RELKSKFDVIL---------LEPPLEEYYRETGITANEKCWTWDDIMK------LEIEEI 224
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 225 AAPRSFVFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 275
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 17/146 (11%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CA-----LEARKARKLCPE 299
F+ K+L +Y + + + S LSPYLHFG+IS +R CA + AR E
Sbjct: 223 FIEKQLIDYAKNSKKVVG-NSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEE 281
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
+ D FL I R+ + CF P + + R D DK + + +
Sbjct: 282 SADLFLRG-IGLRDYSRIICFNFP-FTHEQSLLSHLRFFPWDADVDKF------KAWRQG 333
Query: 360 QTADPLWNASQMEMVYNGKMHGFMRM 385
+T PL +A E+ G MH +R+
Sbjct: 334 RTGYPLVDAGMRELWATGWMHNRIRV 359
>sp|Q3UIK4|MET14_MOUSE Methyltransferase-like protein 14 OS=Mus musculus GN=Mettl14 PE=2
SV=1
Length = 456
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 132 NFIRDVGLADRFEEYPKLRELIRLKDEL------------IAKSNTPPMYLQADIEAFD- 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
I +L P++ D +LE P+E++ T + WD I+ E+ EI
Sbjct: 179 ------IRELTPKF--DVILLEPPLEEYYRETGITANEKCWTWDDIMK------LEIDEI 224
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 225 AAPRSFIFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 275
>sp|A4IFD8|MET14_BOVIN Methyltransferase-like protein 14 OS=Bos taurus GN=METTL14 PE=2
SV=1
Length = 456
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 132 NFIRDVGLADRFEEYPKLRELIRLKDEL------------IAKSNTPPMYLQADIEAFD- 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
I +L P++ D +LE P+E++ T + WD I+ E+ EI
Sbjct: 179 ------IRELTPKF--DVILLEPPLEEYYRETGITANEKCWTWDDIMK------LEIDEI 224
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 225 AAPRSFIFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 275
>sp|Q5R5N4|MET14_PONAB Methyltransferase-like protein 14 OS=Pongo abelii GN=METTL14 PE=2
SV=1
Length = 456
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 132 NFIRDVGLADRFEEYPKLRELIRLKDEL------------IAKSNTPPMYLQADIEAFD- 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
I +L P++ D +LE P+E++ T + WD I+ E+ EI
Sbjct: 179 ------IRELTPKF--DVILLEPPLEEYYRETGITANEKCWTWDDIMK------LEIDEI 224
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 225 AAPRSFIFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 275
>sp|Q9HCE5|MET14_HUMAN Methyltransferase-like protein 14 OS=Homo sapiens GN=METTL14 PE=1
SV=2
Length = 456
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 132 NFIRDVGLADRFEEYPKLRELIRLKDEL------------IAKSNTPPMYLQADIEAFD- 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
I +L P++ D +LE P+E++ T + WD I+ E+ EI
Sbjct: 179 ------IRELTPKF--DVILLEPPLEEYYRETGITANEKCWTWDDIMK------LEIDEI 224
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 225 AAPRSFIFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 275
>sp|Q6NZ22|MET14_DANRE Methyltransferase-like protein 14 OS=Danio rerio GN=mettl14 PE=2
SV=1
Length = 455
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 34/167 (20%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ RE+ R KD++ + A N P+++ ++ +
Sbjct: 131 NFIRDGGLADRFEEYPKQRELIRLKDEL------------ISATNTPPMYLQADPDTFDL 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI------DWDSIIAAVLRKGAEVPEI 227
+ L+ K + +L +E P+E++ I +WD I+ + + + +
Sbjct: 179 RELKCKFDVIL---------IEPPLEEYYRESGIIANERFWNWDDIMKLNIEEISSIRSF 229
Query: 228 G--WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K GF +R ++ T++NNP K + L
Sbjct: 230 VFLWCGSGEGLDLGRMCLRKWGF--RRCEDICWIKTNKNNPGKTKTL 274
>sp|Q821E2|FOLKP_CHLCV Folate synthesis bifunctional protein OS=Chlamydophila caviae
(strain GPIC) GN=folKP PE=3 SV=1
Length = 447
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 8/139 (5%)
Query: 119 CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVD---AHNVVPVWVASEKLEYSAKT 175
C +++ FSP + + N +SD E AH + +++ +
Sbjct: 166 CPQEMILNSFSPNTLLMGVVNVTDNSISDEGLYLEASKAVAHAEKLFAQGASVIDFGGQA 225
Query: 176 LRGKINKLL---PEYLIDYPMLEQPIEKWTGTRQ--SIDWDSIIAAVLRKGAEVPEIGWC 230
K+ +LL E+ P+L+ EKW G RQ I D+ ++++ E+ I W
Sbjct: 226 TNPKVQQLLNVEQEWSRLEPVLKLLAEKWAGRRQYPDISLDTFYPEIIKRALEIYPIRWI 285
Query: 231 ESGEDAAMEVLKGSKDGFL 249
+ E+ + ++D L
Sbjct: 286 NDVSGGSKEMAEIARDANL 304
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,243,978
Number of Sequences: 539616
Number of extensions: 7667165
Number of successful extensions: 14650
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 14617
Number of HSP's gapped (non-prelim): 36
length of query: 464
length of database: 191,569,459
effective HSP length: 121
effective length of query: 343
effective length of database: 126,275,923
effective search space: 43312641589
effective search space used: 43312641589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)