Query 012429
Match_columns 464
No_of_seqs 227 out of 1722
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:33:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00591 phr2 photolyase PhrI 100.0 3.2E-97 7E-102 777.6 37.6 424 11-443 3-438 (454)
2 COG0415 PhrB Deoxyribodipyrimi 100.0 4.2E-91 9.1E-96 710.1 31.7 382 29-444 2-396 (461)
3 TIGR02766 crypt_chrom_pln cryp 100.0 1.3E-85 2.9E-90 693.0 30.3 378 32-445 1-407 (475)
4 PRK10674 deoxyribodipyrimidine 100.0 7.6E-85 1.6E-89 684.7 35.5 380 30-445 3-404 (472)
5 TIGR02765 crypto_DASH cryptoch 100.0 8.5E-85 1.8E-89 679.5 33.4 380 29-445 1-410 (429)
6 TIGR03556 photolyase_8HDF deox 100.0 1.5E-84 3.2E-89 682.4 31.9 380 30-444 2-407 (471)
7 KOG0133 Deoxyribodipyrimidine 100.0 3.3E-55 7.1E-60 450.5 12.9 384 27-444 3-422 (531)
8 PF03441 FAD_binding_7: FAD bi 100.0 5.5E-55 1.2E-59 428.7 4.0 191 232-445 1-206 (277)
9 COG3046 Uncharacterized protei 100.0 1.4E-30 3E-35 255.0 24.5 375 29-438 2-421 (505)
10 PF00875 DNA_photolyase: DNA p 100.0 9.9E-32 2.1E-36 244.7 14.5 150 31-185 1-157 (165)
11 KOG0133 Deoxyribodipyrimidine 99.0 1.6E-12 3.5E-17 135.2 -13.5 415 12-440 79-507 (531)
12 PF04244 DPRP: Deoxyribodipyri 98.4 2.1E-06 4.6E-11 81.6 10.0 149 32-189 1-163 (224)
13 PRK09982 universal stress prot 92.9 0.64 1.4E-05 40.7 8.6 108 44-154 17-137 (142)
14 PRK15005 universal stress prot 92.1 1.2 2.6E-05 38.5 9.3 82 45-127 19-114 (144)
15 PRK10116 universal stress prot 91.7 5.9 0.00013 34.0 13.3 111 42-155 15-138 (142)
16 cd01989 STK_N The N-terminal d 91.7 2.1 4.6E-05 37.1 10.4 84 43-127 12-110 (146)
17 cd01988 Na_H_Antiporter_C The 91.2 2.4 5.3E-05 35.7 10.1 83 44-127 13-101 (132)
18 cd01987 USP_OKCHK USP domain i 90.6 2.6 5.6E-05 35.4 9.6 80 43-127 12-92 (124)
19 cd00293 USP_Like Usp: Universa 90.2 3.8 8.3E-05 33.7 10.3 84 43-127 12-100 (130)
20 PRK12652 putative monovalent c 89.6 3.1 6.7E-05 42.6 10.7 108 44-153 19-148 (357)
21 PRK15456 universal stress prot 87.7 4.2 9.1E-05 35.2 9.0 82 44-127 18-112 (142)
22 PF00582 Usp: Universal stress 85.6 5.3 0.00012 33.2 8.4 84 44-127 16-109 (140)
23 PRK10490 sensor protein KdpD; 85.0 5.9 0.00013 45.7 10.8 119 29-156 251-374 (895)
24 TIGR00289 conserved hypothetic 83.0 8.8 0.00019 36.6 9.3 94 46-151 16-114 (222)
25 cd01994 Alpha_ANH_like_IV This 82.7 9.3 0.0002 35.5 9.2 88 56-151 21-117 (194)
26 PRK15118 universal stress glob 82.6 11 0.00025 32.4 9.4 109 43-154 16-137 (144)
27 COG2205 KdpD Osmosensitive K+ 80.0 27 0.00059 39.3 12.7 110 43-157 260-375 (890)
28 TIGR00290 MJ0570_dom MJ0570-re 78.5 17 0.00037 34.7 9.6 94 45-151 15-114 (223)
29 PRK11175 universal stress prot 73.2 26 0.00056 34.4 9.9 82 45-127 174-268 (305)
30 PRK11175 universal stress prot 72.0 34 0.00073 33.6 10.3 118 39-157 12-147 (305)
31 COG2102 Predicted ATPases of P 67.8 39 0.00084 32.1 8.9 97 44-151 14-115 (223)
32 PF01902 ATP_bind_4: ATP-bindi 65.3 12 0.00026 35.6 5.2 61 87-151 48-114 (218)
33 PF10087 DUF2325: Uncharacteri 63.8 34 0.00074 27.7 7.0 67 86-157 12-84 (97)
34 COG0589 UspA Universal stress 63.2 84 0.0018 26.5 10.0 79 48-127 24-120 (154)
35 TIGR03679 arCOG00187 arCOG0018 62.0 66 0.0014 30.4 9.6 65 56-126 19-92 (218)
36 PF00702 Hydrolase: haloacid d 53.4 27 0.00058 31.9 5.4 49 83-132 129-181 (215)
37 COG2217 ZntA Cation transport 53.1 29 0.00064 38.9 6.3 65 85-154 541-605 (713)
38 PF08218 Citrate_ly_lig: Citra 52.4 80 0.0017 29.0 7.8 95 60-155 27-144 (182)
39 TIGR01497 kdpB K+-transporting 49.7 61 0.0013 36.2 8.1 49 83-132 448-496 (675)
40 PRK09856 fructoselysine 3-epim 49.0 89 0.0019 30.1 8.5 75 49-124 94-176 (275)
41 PF06574 FAD_syn: FAD syntheta 47.8 12 0.00026 33.6 1.9 108 47-156 25-145 (157)
42 PF01261 AP_endonuc_2: Xylose 45.0 96 0.0021 28.0 7.7 82 45-127 71-162 (213)
43 PRK13015 3-dehydroquinate dehy 42.5 1.1E+02 0.0024 27.2 6.9 65 96-163 41-108 (146)
44 TIGR01088 aroQ 3-dehydroquinat 41.5 1.2E+02 0.0025 26.8 6.9 76 85-163 25-106 (141)
45 TIGR01490 HAD-SF-IB-hyp1 HAD-s 41.1 50 0.0011 30.1 5.1 45 82-127 88-132 (202)
46 KOG0207 Cation transport ATPas 39.7 78 0.0017 36.2 6.9 65 87-156 729-793 (951)
47 COG0529 CysC Adenylylsulfate k 39.2 1.4E+02 0.0031 27.6 7.3 58 87-148 41-120 (197)
48 TIGR01512 ATPase-IB2_Cd heavy 38.9 84 0.0018 34.0 7.1 50 81-131 362-412 (536)
49 TIGR01525 ATPase-IB_hvy heavy 38.5 1.3E+02 0.0028 32.7 8.5 48 82-130 385-433 (556)
50 PRK01122 potassium-transportin 38.4 85 0.0019 35.1 7.1 48 84-132 448-495 (679)
51 COG1139 Uncharacterized conser 38.1 84 0.0018 32.9 6.4 69 82-155 63-134 (459)
52 COG2179 Predicted hydrolase of 37.7 1.3E+02 0.0028 27.4 6.7 56 86-144 51-106 (175)
53 PRK14010 potassium-transportin 37.2 94 0.002 34.7 7.2 48 84-132 444-491 (673)
54 COG0196 RibF FAD synthase [Coe 37.1 1.2E+02 0.0027 30.3 7.3 109 45-156 33-153 (304)
55 cd06279 PBP1_LacI_like_3 Ligan 37.0 1.7E+02 0.0036 28.0 8.3 72 80-157 17-88 (283)
56 cd00466 DHQase_II Dehydroquina 36.8 1.6E+02 0.0036 25.9 7.1 65 96-163 39-106 (140)
57 PRK13210 putative L-xylulose 5 36.3 2.3E+02 0.005 27.3 9.2 81 47-128 96-181 (284)
58 TIGR03234 OH-pyruv-isom hydrox 35.8 2.5E+02 0.0054 26.6 9.2 83 46-130 85-178 (254)
59 PF13727 CoA_binding_3: CoA-bi 35.6 86 0.0019 27.5 5.6 44 109-154 130-174 (175)
60 TIGR01488 HAD-SF-IB Haloacid D 34.4 39 0.00085 29.9 3.1 42 84-126 76-117 (177)
61 TIGR01491 HAD-SF-IB-PSPlk HAD- 34.4 56 0.0012 29.6 4.2 40 85-125 84-123 (201)
62 COG0560 SerB Phosphoserine pho 32.5 44 0.00096 31.4 3.2 43 84-127 80-122 (212)
63 TIGR00067 glut_race glutamate 32.0 1.6E+02 0.0035 28.4 7.2 62 63-125 26-90 (251)
64 cd06277 PBP1_LacI_like_1 Ligan 30.9 2.8E+02 0.0061 26.0 8.7 71 80-157 15-89 (268)
65 PRK10671 copA copper exporting 29.8 1.8E+02 0.0039 33.4 8.1 45 86-131 655-699 (834)
66 TIGR00542 hxl6Piso_put hexulos 29.7 3.3E+02 0.0072 26.3 9.1 80 47-127 96-180 (279)
67 cd03013 PRX5_like Peroxiredoxi 29.1 3.7E+02 0.0079 23.6 8.5 59 58-121 29-88 (155)
68 PF13911 AhpC-TSA_2: AhpC/TSA 29.0 94 0.002 25.7 4.4 40 86-128 2-44 (115)
69 PF12710 HAD: haloacid dehalog 28.9 1E+02 0.0022 27.5 5.0 39 88-127 96-136 (192)
70 PF13419 HAD_2: Haloacid dehal 28.9 2.9E+02 0.0062 23.6 7.8 41 85-126 81-125 (176)
71 TIGR00083 ribF riboflavin kina 28.4 1.3E+02 0.0028 29.8 5.9 104 48-154 19-135 (288)
72 cd06295 PBP1_CelR Ligand bindi 28.1 3.3E+02 0.0072 25.6 8.7 71 80-156 23-95 (275)
73 PRK05395 3-dehydroquinate dehy 27.9 3.7E+02 0.008 23.9 7.9 76 85-163 27-108 (146)
74 COG0191 Fba Fructose/tagatose 27.4 6.1E+02 0.013 25.2 10.1 95 49-153 33-134 (286)
75 cd01018 ZntC Metal binding pro 27.3 3E+02 0.0066 26.6 8.3 71 77-155 145-224 (266)
76 PRK09997 hydroxypyruvate isome 26.9 3.6E+02 0.0078 25.7 8.7 79 47-127 87-176 (258)
77 TIGR01544 HAD-SF-IE haloacid d 26.7 85 0.0019 31.0 4.2 36 85-121 125-160 (277)
78 TIGR00338 serB phosphoserine p 26.6 69 0.0015 29.6 3.5 39 85-124 89-127 (219)
79 cd01427 HAD_like Haloacid deha 26.6 1.6E+02 0.0036 23.8 5.6 45 81-126 24-72 (139)
80 TIGR01511 ATPase-IB1_Cu copper 26.5 2.1E+02 0.0046 31.1 7.7 47 82-130 406-452 (562)
81 TIGR00273 iron-sulfur cluster- 25.9 1.2E+02 0.0025 32.1 5.3 68 82-154 49-119 (432)
82 PF13407 Peripla_BP_4: Peripla 25.3 4.1E+02 0.0088 24.7 8.7 71 81-157 12-89 (257)
83 PRK05627 bifunctional riboflav 25.1 1.6E+02 0.0035 29.4 5.9 107 47-155 33-152 (305)
84 KOG1615 Phosphoserine phosphat 24.8 78 0.0017 29.6 3.2 9 137-145 117-125 (227)
85 TIGR03674 fen_arch flap struct 24.7 1.9E+02 0.0042 29.3 6.5 13 232-248 244-256 (338)
86 cd06542 GH18_EndoS-like Endo-b 24.4 3.8E+02 0.0083 25.5 8.3 45 59-106 28-72 (255)
87 cd06294 PBP1_ycjW_transcriptio 24.1 2.9E+02 0.0062 25.8 7.4 71 80-156 17-91 (270)
88 cd04185 GT_2_like_b Subfamily 23.8 3.9E+02 0.0085 23.8 8.0 82 80-163 10-95 (202)
89 cd01017 AdcA Metal binding pro 23.8 4.6E+02 0.0099 25.5 8.9 69 79-155 148-227 (282)
90 cd02970 PRX_like2 Peroxiredoxi 23.7 2.8E+02 0.0061 23.4 6.6 59 58-122 23-81 (149)
91 COG0796 MurI Glutamate racemas 23.6 3.4E+02 0.0074 26.7 7.6 64 63-127 33-98 (269)
92 PRK09484 3-deoxy-D-manno-octul 23.5 2.3E+02 0.0051 25.6 6.3 33 95-127 61-93 (183)
93 cd06297 PBP1_LacI_like_12 Liga 23.5 4.7E+02 0.01 24.6 8.8 71 80-156 12-86 (269)
94 PRK10517 magnesium-transportin 23.3 2.3E+02 0.0051 32.9 7.5 39 83-122 552-590 (902)
95 cd06313 PBP1_ABC_sugar_binding 23.3 4.6E+02 0.01 24.8 8.8 73 80-157 12-89 (272)
96 PLN02954 phosphoserine phospha 23.2 95 0.0021 28.8 3.7 40 82-122 85-124 (224)
97 cd01137 PsaA Metal binding pro 22.8 4.7E+02 0.01 25.7 8.7 68 79-154 152-232 (287)
98 KOG0894 Ubiquitin-protein liga 22.8 1.3E+02 0.0029 28.3 4.4 49 414-462 25-91 (244)
99 PF01220 DHquinase_II: Dehydro 22.7 5E+02 0.011 22.9 7.7 75 85-163 26-107 (140)
100 PRK14719 bifunctional RNAse/5- 22.6 1.6E+02 0.0034 30.3 5.4 60 91-151 36-98 (360)
101 PRK09989 hypothetical protein; 22.5 5.1E+02 0.011 24.6 8.8 78 47-126 87-175 (258)
102 cd00019 AP2Ec AP endonuclease 22.4 3.3E+02 0.0072 26.2 7.5 72 47-120 87-166 (279)
103 PRK00865 glutamate racemase; P 22.4 3E+02 0.0065 26.6 7.1 62 63-125 33-96 (261)
104 cd06547 GH85_ENGase Endo-beta- 22.3 2.4E+02 0.0051 28.7 6.5 85 55-158 56-151 (339)
105 PF06415 iPGM_N: BPG-independe 22.2 6.2E+02 0.014 24.1 8.9 79 40-126 9-100 (223)
106 PRK15122 magnesium-transportin 22.0 2.4E+02 0.0051 32.9 7.2 39 83-122 552-590 (903)
107 TIGR01647 ATPase-IIIA_H plasma 21.6 2.4E+02 0.0051 32.1 7.0 39 84-123 445-483 (755)
108 COG1225 Bcp Peroxiredoxin [Pos 21.5 4.4E+02 0.0096 23.7 7.3 63 57-125 29-91 (157)
109 PF02571 CbiJ: Precorrin-6x re 21.1 3.2E+02 0.007 26.4 7.0 56 99-156 43-101 (249)
110 PRK07084 fructose-bisphosphate 21.1 6.4E+02 0.014 25.5 9.2 104 46-153 36-144 (321)
111 cd06272 PBP1_hexuronate_repres 20.9 5.5E+02 0.012 23.8 8.7 71 80-157 12-83 (261)
112 TIGR01524 ATPase-IIIB_Mg magne 20.7 2.8E+02 0.0062 32.0 7.5 39 83-122 517-555 (867)
113 PF05889 SLA_LP_auto_ag: Solub 20.7 4.3E+02 0.0093 27.5 8.0 116 28-163 100-230 (389)
114 PF08444 Gly_acyl_tr_C: Aralky 20.6 1.5E+02 0.0032 24.0 3.7 48 76-124 31-78 (89)
115 COG0220 Predicted S-adenosylme 20.5 2.6E+02 0.0056 26.7 6.1 47 85-132 84-132 (227)
116 TIGR00715 precor6x_red precorr 20.1 3.6E+02 0.0078 26.2 7.1 26 101-126 177-203 (256)
No 1
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.2e-97 Score=777.57 Aligned_cols=424 Identities=51% Similarity=0.855 Sum_probs=354.8
Q ss_pred cccccccccccCc-cCCC-CCcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHH
Q 012429 11 VQPGRIRVLKQGS-LDKK-RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88 (464)
Q Consensus 11 ~~~~r~~~~~~~~-~~~~-~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~ 88 (464)
+++.||+.+++.| +... +.++|||||||||++||+||++|++.|.+.+.+|+||||+||.+...+.+|.+||++||.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~vL~WFRrDLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~~~~r~~Fl~esL~~ 82 (454)
T TIGR00591 3 FAKKRRRLLSETEKPDLRSSGVVVYWMSRDQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLAATRRHYFFMLGGLDE 82 (454)
T ss_pred CCchheeeccCCCCccCCCCCeEEEEecCchhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCcccccHHHHHHHHHHHHH
Confidence 6778999999965 5444 4559999999999999999999988766667799999999999887899999999999999
Q ss_pred HHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEeeCCeeEeCcccccC
Q 012429 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEK 168 (464)
Q Consensus 89 L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~~~~l~~~~~~~~~ 168 (464)
|+++| +++|++|+|+.|++.++|.+|+++++|++|+++.++...++++|++|++.|+++|.++++++++|+|++.+.++
T Consensus 83 L~~~L-~~~g~~L~v~~g~~~~~l~~l~~~~~i~~V~~~~~~~~~~~~rd~~v~~~l~~~i~~~~~~~~~l~p~~~~~~~ 161 (454)
T TIGR00591 83 VANEC-ERLIIPFHLLDGPPKELLPYFVDLHAAAAVVTDFSPLRQPEQWDEAVGKLLPKDVPFQQVDAHNVVPCWAASKK 161 (454)
T ss_pred HHHHH-HHcCCceEEeecChHHHHHHHHHHcCCCEEEEecccCcHHHHHHHHHHHHhcCCCcEEEECCceEeeCcccCCc
Confidence 99999 99999999999999999999999999999999988888889999999999966899999999999999876667
Q ss_pred CCCccchhhHHHHhhCCCcCCCCCCCCCCCCcCCCCCCCCChhHHHHHHHhcCCCCCCCCCC-CchHHHHHHHhccchhH
Q 012429 169 LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWC-ESGEDAAMEVLKGSKDG 247 (464)
Q Consensus 169 ~~~~~~t~~~~~~k~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gGe~~A~~~L~~~~~~ 247 (464)
.+|++|||+++..+.++..+.+.+...+.+.|....+...++......+ .+...+... .+ +|||++|+++| ++
T Consensus 162 ~~y~~ft~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~gGe~aA~~~L----~~ 235 (454)
T TIGR00591 162 LEYAARTIRGKIRKLLPEYLTEFPRVLKHPSPLDLEAGPVDWDAVRDSL-AVERSVEEV-VWAKPGTTAGLIML----ES 235 (454)
T ss_pred eeeeeecHHHHHHHhChhhccccCCCccCCcccccccCcCCHHHHHHhc-cCcCCcCCc-CCCCCcHHHHHHHH----HH
Confidence 8899999998876654332222222100010010001111221111111 112122221 25 99999999999 99
Q ss_pred HHhhhccCCCCCCCCCCCCCCCCcCchhhcCCccCHHHHHHHHHHHhhhCCccHHHHHHHhhhhHHHHHHHHHhCCCCCc
Q 012429 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDS 327 (464)
Q Consensus 248 Fl~~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~ 327 (464)
|+++++.+|+++||.|+. ++||+|||||+||+||||+|++++.+.....+.+.+.|++||+|||||++++++++|++.+
T Consensus 236 F~~~~l~~Y~~~Rn~p~~-~~tS~LSPyL~~G~IS~R~i~~~~~~~~~~~~~~~~~fl~EL~WR~ef~~~~~~~~p~~~~ 314 (454)
T TIGR00591 236 FIEKRLCFFRTRRNDPNN-DALSMLSPWLHFGQLSAQRAARAVERARGNAGESVEFFEEELVVRRELADNFCFYNPYYDS 314 (454)
T ss_pred HHHHHHHHHHHhcCCccc-ccccccchHHhcCcccHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhHhhhcCCCccc
Confidence 999999999999999999 9999999999999999999999986544323445678999999998999999999999988
Q ss_pred cccchHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHHhhhhcCCCCHHHHHHHHHH
Q 012429 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIY 407 (464)
Q Consensus 328 ~~~~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vAk~LidWr~G~~~a~~~~~~ 407 (464)
+...+.|..+++.+|.+|.++..+.|++|++|+|||||||||||||++|||||||+||+|||+||||+.|++.++++++|
T Consensus 315 ~~~~~~w~~~~l~~~~~d~r~~~~~~~~W~~G~Tg~pivdA~MrqL~~TG~MHNr~RMi~aK~li~W~~g~~~f~~~~~~ 394 (454)
T TIGR00591 315 LCGAYWWARTTLDDHAKDKREHLYSLEQLEKSTTHDYLWNAAQEQLVTEGKMHGFLRMYWAKKILEWTHSPEEALSIAIY 394 (454)
T ss_pred cccchHHHHHHHHHHhcCCccccCCHHHHHhcCcCcHhHhHHHHHHHHhCccccceeeeeeeehhhcCCCHHHHHHHHHH
Confidence 77777899888888877765555689999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCcccCCCCCcccceeeec-CCCCCCc-----c---ccccc
Q 012429 408 LNDKYEIDGRDPNGYVGCMWSIC-GVHDQVS-----L---YHFAL 443 (464)
Q Consensus 408 f~~~yllD~d~a~n~g~wqw~ag-G~~~r~~-----~---~~~~~ 443 (464)
+|++||||||+|+|+|||||+ | |+|++|| | ++||+
T Consensus 395 ln~~~lvDgd~a~n~~~wqW~-~~G~d~~p~~~~~~fg~iR~~np 438 (454)
T TIGR00591 395 LNDKYILDGRDPNGYVGCMWS-ICGIHDQGWAERIVFGKIRYMNY 438 (454)
T ss_pred hhhhhhccCCCCCccceeeeE-eccccCCCCCCCccceeeeecCh
Confidence 999999999999999999999 6 9999999 7 66664
No 2
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-91 Score=710.08 Aligned_cols=382 Identities=23% Similarity=0.331 Sum_probs=313.3
Q ss_pred CcEEEEEcCCCCccCCHHHHHHHHHhhhCCCC-EEEEEEecCCcc-ccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC
Q 012429 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVP-VAVAFNLFDQFL-GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG 106 (464)
Q Consensus 29 ~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~-vl~vfi~dp~~~-~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G 106 (464)
+++|||||||||++||+||.+|++ .+.+ +++|||+||.++ ..+++|..||.+||++|+++| +++|++|+|..|
T Consensus 2 ~~~l~WfrrDLR~~DN~aL~~A~~----~~~~~~~~vfi~~~~~~~~~~~~~~~Fl~~sL~~L~~~L-~~~gi~L~v~~~ 76 (461)
T COG0415 2 STVLVWFRRDLRLTDNAALAAACQ----SGQPVIIAVFILDPEQLGHASPRHAAFLLQSLQALQQSL-AELGIPLLVREG 76 (461)
T ss_pred CeEEEEeccccccCChHHHHHHHh----cCCCceEEEEEechhhccccCHHHHHHHHHHHHHHHHHH-HHcCCceEEEeC
Confidence 578999999999999999999998 4556 568999999987 489999999999999999999 999999999999
Q ss_pred CccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCccccc--CCCCccchh-hHHHHh
Q 012429 107 EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVASE--KLEYSAKTL-RGKINK 182 (464)
Q Consensus 107 ~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~~~--~~~~~~~t~-~~~~~k 182 (464)
++.+++++++++.+++.|+++.++...++.||.+|++.|. .||.++.|+++++++|+.+.+ ++.|++||+ +++|..
T Consensus 77 ~~~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~~~~~~d~~l~~p~~~~t~~~~~y~vfT~F~k~~~~ 156 (461)
T COG0415 77 DPEQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIAVHSFWDALLHEPGEVRTGSGEPYKVFTPFYKAWRD 156 (461)
T ss_pred CHHHHHHHHHHHhCcceEEeeeeechhHHHHHHHHHHHHHhcCceEEEeccccccCHhhccCCCCCCccccchHHHHHHH
Confidence 9999999999999999999998887778999999999995 899999999999999976543 688999995 566766
Q ss_pred hCCCcCCCCCCCCCCCCcCCCCCCCCChhHHHHHHHhcCC-CCCCCCCCCchHHHHHHHhccchhHHHhhhccCCCCCCC
Q 012429 183 LLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA-EVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261 (464)
Q Consensus 183 ~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd 261 (464)
.+. ...+.+. | .......+ ... ++.....+. .......+.|||++|+++| ++|+.+++.+|++.||
T Consensus 157 ~~~-~~~~~~~--p--~~~~~~~~-~~~---~~~~~~~P~~~~~~~~~~~~Ge~aA~~~l----~~F~~~~l~~Y~~~Rd 223 (461)
T COG0415 157 RLR-ILRPVPA--P--DVLDALRD-EEP---PPEEISLPDFSKFDVLLFTGGEKAALARL----QDFLAEGLDDYERTRD 223 (461)
T ss_pred hcc-cCCCCCC--c--chhccccc-ccc---CcccccCCccccccccCCCchHHHHHHHH----HHHHHHHHHHHHHhcC
Confidence 533 1222221 1 00000000 000 000001110 0011235799999999999 9999999999999999
Q ss_pred CCCCCCCCCcCchhhcCCccCHHHHHHHHHHHhhhCCccHHHHHHHhhhhHHHHHHHHHhCCCCCccccchHHHHhhhhh
Q 012429 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341 (464)
Q Consensus 262 ~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~~~~w~~~~l~~ 341 (464)
+|+. ++||+|||||+||+||||+||+++.+..+...++.+.|++||+|| |||+|+++++|+...... |..++...
T Consensus 224 ~p~~-~~TS~LSpyL~~G~IS~r~v~~~~~~~~~~~~~~~~~~~~eL~WR-EFy~h~~~~~p~~~~~~~---~~~~~~~~ 298 (461)
T COG0415 224 FPAL-DGTSRLSPYLAFGVISPREVYAALLAAESDAREGTAALINELIWR-EFYQHLLYHYPSLSRFEP---FAEKTLNI 298 (461)
T ss_pred Cccc-ccccccCHHHHcCCcCHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHHHHHHHhCCccccccc---ccccccCC
Confidence 9999 999999999999999999999999887655567889999999998 999999999998744322 33222222
Q ss_pred hccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHH----hhh-hcCCCCHHHHHHHHHHHhhccCccc
Q 012429 342 HASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGPEEALAIAIYLNDKYEIDG 416 (464)
Q Consensus 342 ~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vA----k~L-idWr~G~~~a~~~~~~f~~~yllD~ 416 (464)
+..+.+ +.|++||+|+|||||||||||||++||||||||||||| |+| ||||.|++ ||+++ ||||
T Consensus 299 ~w~~~~---~~f~aW~~G~TGyPIVDA~MRqL~~TG~MHNR~RMivAsFL~k~L~IdWR~GE~-------~F~~~-LiD~ 367 (461)
T COG0415 299 PWEDNP---AHFQAWQEGKTGYPIVDAAMRQLNQTGYMHNRMRMIVASFLTKDLLIDWREGEK-------YFMRQ-LIDG 367 (461)
T ss_pred ccccCH---HHHHHHhcCCCCCccccHHHHHHHHhCCcchHHHHHHHHHHHHhcCCCHHHHHH-------HHHHh-ccCC
Confidence 212332 36999999999999999999999999999999999999 577 99999997 99998 9999
Q ss_pred CCCCCcccceeeec-CCCCCCcccccccc
Q 012429 417 RDPNGYVGCMWSIC-GVHDQVSLYHFALF 444 (464)
Q Consensus 417 d~a~n~g~wqw~ag-G~~~r~~~~~~~~~ 444 (464)
|+|+|+|||||+|| |+|++||||+||+.
T Consensus 368 D~asN~ggWQW~AstG~Da~pyfRiFNp~ 396 (461)
T COG0415 368 DPASNNGGWQWAASTGTDAAPYFRIFNPV 396 (461)
T ss_pred CcccCCCCeeEEeccCCCCCcceeccCHH
Confidence 99999999999999 99999999988874
No 3
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=100.00 E-value=1.3e-85 Score=692.98 Aligned_cols=378 Identities=19% Similarity=0.211 Sum_probs=298.4
Q ss_pred EEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc---cchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe-CC
Q 012429 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFLFQ-GE 107 (464)
Q Consensus 32 l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~-G~ 107 (464)
|||||||||++||+||.+|++ .+ +|+||||+||.++. .+.++.+||++||.+|+++| +++|++|+|+. |+
T Consensus 1 l~WFRrDLRl~DN~aL~~A~~----~~-~vlpvyi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L-~~~G~~L~v~~~g~ 74 (475)
T TIGR02766 1 IVWFRRDLRVEDNPALAAAAR----AG-PVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSL-RSLGTCLVTIRSTD 74 (475)
T ss_pred CEecCCCCCcchHHHHHHHHh----CC-CEEEEEEechHHhccccccHHHHHHHHHHHHHHHHHH-HHcCCceEEEeCCC
Confidence 699999999999999998875 34 89999999998543 46777889999999999999 99999999984 89
Q ss_pred ccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCcccc--cCCCCccch-hhHHHHhh
Q 012429 108 AEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS--EKLEYSAKT-LRGKINKL 183 (464)
Q Consensus 108 ~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~~--~~~~~~~~t-~~~~~~k~ 183 (464)
++++|.+|+++++|+.|+++.++...+++||++|++.|+ .||+++.+++++|++|+.+. .+++|++|| |++++.+.
T Consensus 75 ~~~~l~~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~i~~~~~~~~~~ft~f~~~~~~~ 154 (475)
T TIGR02766 75 TVAALLDCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGISVQSFNADLLYEPWEVYDELGRPFTMFAAFWERCLSM 154 (475)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCCEEEEecCCEEEChhhhcccCCCCCCeecHHHHHHHhc
Confidence 999999999999999999998888888999999999995 89999999999999998543 367899997 55666543
Q ss_pred CCCcCCCCCCCCCCCCcCCCCCCCCChhH--HHHHHHhcCCCCCCCCCCCchHHHHHHHhccchhHHHhhhccCCCCCCC
Q 012429 184 LPEYLIDYPMLEQPIEKWTGTRQSIDWDS--IIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261 (464)
Q Consensus 184 ~~~~~~~~p~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd 261 (464)
......+.+. |...+..... ...... +.+.. ...........++|||++|+++| ++|+++++.+|+++||
T Consensus 155 ~~~~~~~~~~--p~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~gGe~~A~~~L----~~Fl~~~~~~Y~~~Rd 226 (475)
T TIGR02766 155 PYDPESPLLP--PKKIISGDVS-KCSADDLGFEDDS-EKGSNALLARAWSPGWSNADKAL----TEFINGPLLEYSKNRK 226 (475)
T ss_pred cCCCCCCCCC--ccccCCCccc-cCChhhcCCCCcc-cccccccccccCCCccHHHHHHH----HHHHHHHHHHHhhcCC
Confidence 2111011111 1000000000 000000 00000 00000000123799999999999 9999999999999999
Q ss_pred CCCCCCCCCcCchhhcCCccCHHHHHHHHHHHh-----h---hCCccHHHHHHHhhhhHHHHHHHHHhCCCCCccc----
Q 012429 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKAR-----K---LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLK---- 329 (464)
Q Consensus 262 ~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~-----~---~~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~~~---- 329 (464)
.|+. ++||+|||||+|||||||+|++++.+.. + ...++.++|++||+|| |||+++++++|.+....
T Consensus 227 ~p~~-~~tS~LSPyL~~G~ISpR~v~~~~~~~~~~~~~~~~~~~~~s~~~f~~eL~WR-ef~~~~~~~~p~~~~~~~~~~ 304 (475)
T TIGR02766 227 KADS-ATTSLLSPYLHFGEVSVRKVFHLVRMKQIAWANEGNSAGEESVNLFLRSIGLR-EYSRYISFNHPFSHEKPLLGH 304 (475)
T ss_pred CCCC-CCCCCCCcccccCcccHHHHHHHHHhhhhhhhhcccCCCcccHHHHHHHHHHH-HHHHHHHHhCCcccccchhhh
Confidence 9998 9999999999999999999999985311 1 1245678899999998 99999999998764321
Q ss_pred -cchHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHH----hhh-hcCCCCHHHHHH
Q 012429 330 -GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGPEEALA 403 (464)
Q Consensus 330 -~~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vA----k~L-idWr~G~~~a~~ 403 (464)
..++|. .++ ..|++|++|+|||||||||||||++|||||||+||||| |+| ||||.|++
T Consensus 305 ~~~~~w~--------~~~----~~f~aW~~G~TG~P~VDA~MRqL~~TGwmhnR~Rm~vAsfl~k~L~idWr~G~~---- 368 (475)
T TIGR02766 305 LKFFPWA--------VDE----NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMK---- 368 (475)
T ss_pred hhcCCCC--------CCH----HHHHHHHcCCCCCcchhHHHHHHHHHCCCcHHHHHHHHHHHHcccCCChHHHHH----
Confidence 012342 132 25999999999999999999999999999999999999 578 99999998
Q ss_pred HHHHHhhccCcccCCCCCcccceeeec-CCCCCCcccccccce
Q 012429 404 IAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALFS 445 (464)
Q Consensus 404 ~~~~f~~~yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~~ 445 (464)
||+++ |||||+|+|+|||||+|| |+|++|||++||+-.
T Consensus 369 ---~F~~~-LiD~D~a~N~g~Wqw~Ag~g~d~~~~~RifnP~~ 407 (475)
T TIGR02766 369 ---YFWDT-LLDADLESDALGWQYISGSLPDGRELDRIDNPQL 407 (475)
T ss_pred ---HHHHH-ccccchhcccccccccccCCCCCCcccccCCHHH
Confidence 99998 999999999999999999 999999999998753
No 4
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=100.00 E-value=7.6e-85 Score=684.71 Aligned_cols=380 Identities=20% Similarity=0.259 Sum_probs=308.4
Q ss_pred cEEEEEcCCCCccCCHHHHHHHHHhhhCC-CCEEEEEEecCCcc---ccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe
Q 012429 30 PVVYWMFRDQRVRDNWALIHAVDQANKNN-VPVAVAFNLFDQFL---GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ 105 (464)
Q Consensus 30 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~-~~vl~vfi~dp~~~---~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~ 105 (464)
.+|||||||||++||+||.+|++ .+ .+|+||||+||... ..+.+|++||++||.+|+++| +++|++|+|+.
T Consensus 3 ~~l~WfRrDLRl~DN~aL~~A~~----~~~~~vlpvyv~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L-~~~g~~L~v~~ 77 (472)
T PRK10674 3 THLVWFRNDLRLHDNLALAAACR----DPSARVLALFIATPAQWAAHDMAPRQAAFINAQLNALQIAL-AEKGIPLLFHE 77 (472)
T ss_pred ceEEEECCCCCcchHHHHHHHHh----CCCCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHH-HHcCCceEEEe
Confidence 36999999999999999999986 33 47999999999754 368999999999999999999 99999999997
Q ss_pred C----CccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEeeCCeeEeCccc--ccCCCCccch-hhH
Q 012429 106 G----EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVA--SEKLEYSAKT-LRG 178 (464)
Q Consensus 106 G----~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~~~~l~~~~~~--~~~~~~~~~t-~~~ 178 (464)
| ++.++|++|+++++|+.|+++.++...+++||++|++.|. +|.++.+++++|++|+.+ ..+++|++|| |++
T Consensus 78 g~~~g~~~~vl~~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~l~-~i~~~~~~~~~l~~~~~i~~~~~~~y~~ft~f~~ 156 (472)
T PRK10674 78 VDDFAASVEWLKQFCQQHQVTHLFYNYQYEVNERQRDAAVERALR-NVVCQGFDDSVLLPPGSVMTGNHEMYKVFTPFKN 156 (472)
T ss_pred cCCcCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHcC-CCEEEEecCceEeCccccccCCCCCCCcccHHHH
Confidence 5 6999999999999999999999998888999999999997 899999999999999864 3467899999 567
Q ss_pred HHHhhCCCcCC-CCCCCCCCCCcCCCCCCCCChhHHHHHHHhcCCCCC--CCCCCCchHHHHHHHhccchhHHHhhhccC
Q 012429 179 KINKLLPEYLI-DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255 (464)
Q Consensus 179 ~~~k~~~~~~~-~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~ 255 (464)
+|.+.+..... +.+. |...+. ..... +.+..++..+. ....++|||++|+++| ++|+++++.+
T Consensus 157 ~~~~~~~~~~p~~~~~--p~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~gGe~~A~~~L----~~f~~~~l~~ 222 (472)
T PRK10674 157 AFLKRLREGDPECVPA--PKVRSS----GAIEP----LPPIPFNYPQQSFDTALFPVGEKAAIAQL----RQFCQQGAGE 222 (472)
T ss_pred HHHHhhcccCCccCCC--Cccccc----cccCC----CCcccccCcccccccCCCCCCHHHHHHHH----HHHHHHHHHH
Confidence 77765432111 1111 100000 00000 01001111111 1124799999999999 9999999999
Q ss_pred CCCCCCCCCCCCCCCcCchhhcCCccCHHHHHHHHHHHhhh--CCccHHHHHHHhhhhHHHHHHHHHhCCCCCccccchH
Q 012429 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL--CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333 (464)
Q Consensus 256 Y~~~Rd~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~--~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~~~~ 333 (464)
|++.||.|.. ++||+|||||+||+||||+|++++.+..+. ...+.++|++||+|| ||++++++++|++....+..+
T Consensus 223 Y~~~r~~p~~-~~tS~LSPyL~~G~iS~r~v~~~~~~~~~~~~~~~~~~~fl~eL~WR-ef~~~~~~~~p~~~~~~~~~~ 300 (472)
T PRK10674 223 YEQQRDFPAV-DGTSRLSAYLATGVLSPRQCLHRLLAEQPQALDGGAGSVWLNELIWR-EFYRHLMVAYPSLCKHRPFIA 300 (472)
T ss_pred hccccCCCCc-cCCCCcChhhccCcCCHHHHHHHHHHHhhhhhccCchhHHHHHHHHH-HHHHHHHHhCCchhhccCcch
Confidence 9999999998 899999999999999999999999764321 223456899999998 999999999999866544444
Q ss_pred HHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHH----hhh-hcCCCCHHHHHHHHHHH
Q 012429 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGPEEALAIAIYL 408 (464)
Q Consensus 334 w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vA----k~L-idWr~G~~~a~~~~~~f 408 (464)
|......++ |+ +.|++|++|+|||||||||||||++|||||||+||+|| |+| |||+.|++ ||
T Consensus 301 ~~~~~~w~~--~~----~~~~~W~~G~TG~P~vDA~mrqL~~tG~mhnr~Rm~vAsfL~k~L~idWr~G~~-------~F 367 (472)
T PRK10674 301 WTDRVQWQS--NP----AHLQAWQQGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGER-------YF 367 (472)
T ss_pred hhhccCccc--CH----HHHHHHHcCCCCCccHHHHHHHHHHHCCccHHHHHHHHHHHHcCcccCCHhHHH-------HH
Confidence 543333222 33 35999999999999999999999999999999999999 688 99999997 99
Q ss_pred hhccCcccCCCCCcccceeeec-CCCCCCcccccccce
Q 012429 409 NDKYEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALFS 445 (464)
Q Consensus 409 ~~~yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~~ 445 (464)
+++ |||||+|+|+|||||+|| |+|++|||++||+..
T Consensus 368 ~~~-LlD~D~a~N~g~Wqw~ag~G~d~~py~R~fnP~~ 404 (472)
T PRK10674 368 MSQ-LIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 404 (472)
T ss_pred HHH-hhcCCcccchhccceeecCCCCCCcceeecCHHH
Confidence 999 999999999999999999 999999999888753
No 5
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=100.00 E-value=8.5e-85 Score=679.46 Aligned_cols=380 Identities=19% Similarity=0.196 Sum_probs=300.2
Q ss_pred CcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc---------cchhhHHHHHHHHHHHHHHHHhhcCC
Q 012429 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---------AKARQLGFMLRGLRLLQRNIEETFQI 99 (464)
Q Consensus 29 ~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~---------~~~~r~~Fl~esL~~L~~~L~~~~G~ 99 (464)
+.+|||||||||++||+||.+|++ .+.+|+||||+||+++. .+++|++||++||.+|+++| +++|+
T Consensus 1 ~~~l~WfRrDLRl~DN~aL~~A~~----~~~~vl~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L-~~~g~ 75 (429)
T TIGR02765 1 KVVLYWFRNDLRVHDNPALYKASS----SSDTLIPLYCFDPRQFKLTHFFGFPKTGPARGKFLLESLKDLRTSL-RKLGS 75 (429)
T ss_pred CeEEEEeCCCCccccHHHHHHHHh----cCCeEEEEEEECchHhccccccccCCCCHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 368999999999999999999987 45689999999998654 58999999999999999999 99999
Q ss_pred cEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCccccc--CCCCccchh
Q 012429 100 LFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVASE--KLEYSAKTL 176 (464)
Q Consensus 100 ~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~~~--~~~~~~~t~ 176 (464)
+|+++.|++.++|.+|+++++|++|+++.++...+++||++|++.|+ .||.++.+++++|++|+.+.. +++|++||.
T Consensus 76 ~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~l~~p~~v~~~~~~~~~~ft~ 155 (429)
T TIGR02765 76 DLLVRSGKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGIHVEQHWGSTLYHEDDLPFDLEDLPDVFTQ 155 (429)
T ss_pred CeEEEeCCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCceEEEecCCEeECHHhcCCCCCCCCCCchH
Confidence 99999999999999999999999999999998889999999999995 799999999999999885433 677888874
Q ss_pred -hHHHHhhCCCcCCCCCCCCCCCCcCCCCCCCCChhHHHHHHHhcCCCC--CC-CCCCCchHHHHHHHhccchhHHHh-h
Q 012429 177 -RGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEV--PE-IGWCESGEDAAMEVLKGSKDGFLT-K 251 (464)
Q Consensus 177 -~~~~~k~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~gGe~~A~~~L~~~~~~Fl~-~ 251 (464)
++++.+.+.. ..+.+.. ...+. .+...+. ...|++..++... .. ...++|||++|+++| ++|++ +
T Consensus 156 f~~~~~~~~~~-~~~~~~p--~~~~~--~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~gGe~~A~~~L----~~Fl~~~ 225 (429)
T TIGR02765 156 FRKQVEAKCSI-RPPLPAP--EKLPP--LPSVDDP-GWIPTLEDLGEESSEVDRGLPFVGGETAGLARL----KEYFWSK 225 (429)
T ss_pred HHHHHHhhCCC-CCCCCCc--ccCCC--Ccccccc-cCCCChhhcCCCcccccccCCcCchHHHHHHHH----HHHHhhc
Confidence 5666543321 2222221 01110 0000000 0012221222111 11 124799999999999 99997 4
Q ss_pred hccCCCCCCCCCCCCCCCCcCchhhcCCccCHHHHHHHHHHHhhhC--CccHHHHHHHhhhhHHHHHHHHHhCC-CCCcc
Q 012429 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC--PEAIDTFLEELIVRRELADNFCFYQP-NYDSL 328 (464)
Q Consensus 252 ~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~~--~~~~~~fi~eL~wRrEf~~~~~~~~p-~~~~~ 328 (464)
.+.+|++.||.|...++||+|||||+||+||||+|++++.+..... .++.+.|+.||+|| |||++++.++| .+..+
T Consensus 226 ~l~~Y~~~R~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~~~~~~~~~~~~eL~WR-ef~~~~~~~~~~~~~~~ 304 (429)
T TIGR02765 226 DLKSYKETRNGMLGPDYSTKFSPWLALGCVSPRQIYEELQRYETERGANDSTYWVIFELLWR-DYFRFYALKYGNRLFRF 304 (429)
T ss_pred cHhhhhhccCcccCCCCcCccCHHHhCCcccHHHHHHHHHHHHhhcccCCCcHHHHHHHHHH-HHHHHHHHHcCCccccc
Confidence 6999999999975327999999999999999999999987643221 22344567799998 99987776665 34433
Q ss_pred ccc----hHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHH----hhh-hcCCCCHH
Q 012429 329 KGA----WEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGPE 399 (464)
Q Consensus 329 ~~~----~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vA----k~L-idWr~G~~ 399 (464)
.+. ++|+. |+ +.+++|++|+|||||||||||||++|||||||+||+|| |+| ||||.|++
T Consensus 305 ~~~~~~~~~w~~--------~~----~~~~~W~~G~TG~PivDAamrqL~~TG~mhnr~Rm~vAsFl~k~L~idWr~G~~ 372 (429)
T TIGR02765 305 GGLRGKHPKWSF--------DA----KRFEQWKTGTTGYPLVDANMRELNATGFMSNRGRQNVASFLVKDLGLDWRYGAE 372 (429)
T ss_pred CCCccCCCCCcc--------CH----HHHHHHhCCCCCChhhhHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCHHHHHH
Confidence 222 35641 32 25999999999999999999999999999999999999 577 99999998
Q ss_pred HHHHHHHHHhhccCcccCCCCCcccceeeec-CCCCCCcccccccce
Q 012429 400 EALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALFS 445 (464)
Q Consensus 400 ~a~~~~~~f~~~yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~~ 445 (464)
||+++ |||||+|+|+|||||+|| |+|++| |++||+-.
T Consensus 373 -------~F~~~-LiD~D~a~n~g~Wqw~ag~g~d~~~-~Rifnp~~ 410 (429)
T TIGR02765 373 -------WFETQ-LVDYDVCSNWGNWQYLAGVGNDPRG-SRQFNIEK 410 (429)
T ss_pred -------HHHHH-hhccchhcCcccchhhhcCcCCCCc-CccCCHHH
Confidence 99998 999999999999999999 999999 99988753
No 6
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=100.00 E-value=1.5e-84 Score=682.40 Aligned_cols=380 Identities=20% Similarity=0.258 Sum_probs=303.3
Q ss_pred cEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc---cchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC
Q 012429 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFLFQG 106 (464)
Q Consensus 30 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G 106 (464)
.+|||||||||++||+||.+|++ .+.+|+||||+||++.. .+.+|++||++||.+|+++| +++|++|+++.|
T Consensus 2 ~vl~WfRrDLRl~DN~AL~~A~~----~~~~vl~vfi~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L-~~~G~~L~v~~G 76 (471)
T TIGR03556 2 LILFWHRRDLRLSDNIGLAAARQ----QSAKVVGLFCLDPNILQADDMAPARVAYLIGCLQELQQRY-QQAGSQLLILQG 76 (471)
T ss_pred CEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEEchhhhccccCCHHHHHHHHHHHHHHHHHH-HHCCCCeEEEEC
Confidence 58999999999999999999986 46799999999998653 57899999999999999999 999999999999
Q ss_pred CccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCccc--ccCCCCccchhhH-HHHh
Q 012429 107 EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVA--SEKLEYSAKTLRG-KINK 182 (464)
Q Consensus 107 ~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~--~~~~~~~~~t~~~-~~~k 182 (464)
++.++|++|+++++|++|+++.++...+++||++|++.|+ .||.++.+.+++|++|+.+ .++++|++||++. ++.+
T Consensus 77 ~p~~vl~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~l~~p~~i~~~~~~~y~~ft~f~k~~~~ 156 (471)
T TIGR03556 77 DPVQLIPQLAQQLGAKAVYWNLDVEPYGRKRDRAVAAALKEAGIAVVTLWDQLLHSPDEILTGSGNPYTVYTPFWKNWSS 156 (471)
T ss_pred CHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHCCCEEEEeCCcEEECccccccCCCCCCcchhHHHHHHHh
Confidence 9999999999999999999998888888999999999996 8999999999999998854 3467899999764 4443
Q ss_pred hCCCcCCCCCCCCCCCC--cCCCC-CCCCChhHHHHHHHhcCCCCCCCCCCCchHHHHHHHhccchhHHHhhhccCCCCC
Q 012429 183 LLPEYLIDYPMLEQPIE--KWTGT-RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259 (464)
Q Consensus 183 ~~~~~~~~~p~~~p~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~ 259 (464)
.... .+.+....... +.... ...++... +|.+..++........++|||++|+++| ++|+++++.+|+.+
T Consensus 157 ~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~gGe~~A~~~L----~~f~~~~l~~Y~~~ 229 (471)
T TIGR03556 157 LPKP--TPVATPTELEGLTEAELEAAAPLGVIA-LPTAKDLGFDWDGDLILEPGETAAQARL----EEFCDRAIADYQEQ 229 (471)
T ss_pred cccc--CCCCCccccccCCcccccccccccccc-CCcccccccccccccCCCCcHHHHHHHH----HHHHHHHHHHhhhc
Confidence 2211 11111000000 00000 00011000 1221111111111113789999999999 99999999999999
Q ss_pred CCCCCCCCCCCcCchhhcCCccCHHHHHHHHHHHhh-----hCCccHHHHHHHhhhhHHHHHHHHHhCCCCCcccc----
Q 012429 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK-----LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG---- 330 (464)
Q Consensus 260 Rd~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~-----~~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~---- 330 (464)
||.|.. ++||+|||||+||+||||+|++++.+... ...+++++|++||+|| |||+++++++|++....-
T Consensus 230 r~~p~~-~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~~~~~~~~~~~~f~~eL~WR-ef~~~~~~~~p~~~~~~~~~~~ 307 (471)
T TIGR03556 230 RNFPAL-DGTSQLSPALKFGVIGIRTVWQATQEAHENSRSEEARNSIRTWQQELAWR-EFYQHALYHFPELADGPYRSLF 307 (471)
T ss_pred cCCCCC-CCCCCCChhhcCCcccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH-HHHHHHHHHCcchhccccchhh
Confidence 999988 89999999999999999999999976432 1234678999999998 999999888888654211
Q ss_pred -chHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHHh----hh-hcCCCCHHHHHHH
Q 012429 331 -AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK----KI-LEWTTGPEEALAI 404 (464)
Q Consensus 331 -~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vAk----~L-idWr~G~~~a~~~ 404 (464)
.++|. .++ ..|++|++|+|||||||||||||++|||||||+||+||+ +| |||+.|++
T Consensus 308 ~~~~w~--------~~~----~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~vAsfl~k~L~idWr~G~~----- 370 (471)
T TIGR03556 308 QNFPWE--------NNE----AHFQAWCEGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEK----- 370 (471)
T ss_pred hcCCCc--------CCH----HHHHHHhcCCCCCCcccHHHHHHHHhCCccHHHHHHHHHHHHcccCCCHHHHHH-----
Confidence 12342 233 259999999999999999999999999999999999995 67 99999998
Q ss_pred HHHHhhccCcccCCCCCcccceeeec-CCCCCCcccccccc
Q 012429 405 AIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALF 444 (464)
Q Consensus 405 ~~~f~~~yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~ 444 (464)
||+++ |||||+|+|+|||||+|| |+|++| |++||+.
T Consensus 371 --~F~~~-LlD~D~a~N~g~Wqw~a~~G~d~~p-~R~fnp~ 407 (471)
T TIGR03556 371 --YFMQK-LIDGDLAANNGGWQWSASSGMDPKP-LRIFNPA 407 (471)
T ss_pred --HHHHH-hhhcChhhccccccchhcCCCCCCC-CcccCHH
Confidence 99999 999999999999999999 999999 7777764
No 7
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-55 Score=450.54 Aligned_cols=384 Identities=17% Similarity=0.212 Sum_probs=282.7
Q ss_pred CCCcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcc---ccchhhHHHHHHHHHHHHHHHHhhcCCcEEE
Q 012429 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---GAKARQLGFMLRGLRLLQRNIEETFQILFFL 103 (464)
Q Consensus 27 ~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v 103 (464)
.+..+|+|||+|||+||||||.+|+. ...+|.||||+||+.. ..|..+++||.|+|.+|+++| +++|++|++
T Consensus 3 ~~~~~v~wfr~~lR~~dnpal~~a~~----~~~~~~~v~i~d~~~~~~~~~g~~~~~~l~qsL~~ld~sl-~~l~~~L~v 77 (531)
T KOG0133|consen 3 TGSKSVHWFRKGLRLHDNPALLAAAA----GKEPVRPVFILDPEEAGSSNVGRNRWRFLLQSLEDLDQSL-RELNSRLFV 77 (531)
T ss_pred CccceEEecccCcccccChhhHHHhc----cCCCceeEEEeCHhHhhccccchhHHHHHHHHHHHHHHHH-HHhCCceEE
Confidence 45678999999999999999986665 4569999999999864 578899999999999999999 999999999
Q ss_pred EeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCcccc--c-CCCCccch-hhH
Q 012429 104 FQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS--E-KLEYSAKT-LRG 178 (464)
Q Consensus 104 ~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~~--~-~~~~~~~t-~~~ 178 (464)
++|.|.++|..+.+..+++.|.+++......+.+|..++..+. .|+.+.+..+++++.++.+. + ++++-.+. |+.
T Consensus 78 ~~~~p~~vl~~~~~~~~~~~l~~~~~~~p~~~vrD~~~~~~a~~l~i~v~s~~s~~~~~~~~~i~~n~~k~pls~~~~~~ 157 (531)
T KOG0133|consen 78 FRGHPIAVLSRLLEQVGVQKLKFEYDMEPDGKVRDATIKSLATELGLSVVSPVSHTLYLPDKIIEANGGKPPLSYKTFRG 157 (531)
T ss_pred EeCCchHHHhhhhhccceeEEEEEEeccCccccccHHHHHHHHHhhhhhcccCchhhhcHHHHHHhcCCCCccccccccc
Confidence 9999999999999999999999754333334778999999885 89999999999999887532 2 34444443 333
Q ss_pred HHHhhCCCcCCCCCCCCCCCCcCCCCCC---CCChhHHHHHHHhcCC---CCCCCCCCCchHHHHHHHhccchhHHHhhh
Q 012429 179 KINKLLPEYLIDYPMLEQPIEKWTGTRQ---SIDWDSIIAAVLRKGA---EVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252 (464)
Q Consensus 179 ~~~k~~~~~~~~~p~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~ 252 (464)
.... +.....| .........+..+. ........++++.+.. .... ..|++|++.|+.+| +.|+...
T Consensus 158 ~~~~-~~~~~~p--~~v~~~~~~~~~~~~~~~~~~~~~v~~~e~l~~~~~~~~~-~~~~~g~s~al~~l----~~~l~~~ 229 (531)
T KOG0133|consen 158 VCQS-MSAPKIP--ALVLSGLAVEKHPNFLANSKASAVVPTLELLRFIPSNYGE-VVWRGGESEALKRL----DAHLKVP 229 (531)
T ss_pred cccc-ccccccc--ccccccccCCCChhhhhhcccccccCCchhhccCcccccc-cccCCcccchhHHH----HHHhhHH
Confidence 2221 1111111 10000000000000 0000011122221111 1111 23789999999999 9999876
Q ss_pred --ccCCCCCCCCCCC--CCCCCcCchhhcCCccCHHHHHHH--HHHHh---hhCCccHH-HHHHHhhhhHHHHHHHHHhC
Q 012429 253 --LKNYPTDRNNPLK--PRALSGLSPYLHFGQISAQRCALE--ARKAR---KLCPEAID-TFLEELIVRRELADNFCFYQ 322 (464)
Q Consensus 253 --l~~Y~~~Rd~p~~--~~~tS~LSPyL~~G~LS~R~v~~~--~~~~~---~~~~~~~~-~fi~eL~wRrEf~~~~~~~~ 322 (464)
..++......+.. ..+|+.|||||+||+||+|.+++. ..+.. ++.....+ .|+.||+|| ||+|+....+
T Consensus 230 ~~~an~~~~~~~~~~~~~~s~~~Ls~yL~fg~~svr~~~~~~~~k~V~~~~~~~s~~~es~~~~qv~Wr-e~~y~~~~n~ 308 (531)
T KOG0133|consen 230 LWVANLELRYSNANSRVKISTTVLSPYLKFGCLSVRYFYRCVRLKQVKWKAKKNSLPPESLFLGQVAWR-EFFYTAAFNT 308 (531)
T ss_pred HHHhhhhccccccchhcCCCccccccceeeccceeEeehhHhHHHHHHHhhhcccCCccccccceeeee-chhhHhhcCC
Confidence 4555554444432 267889999999999999999852 22221 12333345 499999998 9999999888
Q ss_pred CCCCcccc-----chHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHHh-----hh-
Q 012429 323 PNYDSLKG-----AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KI- 391 (464)
Q Consensus 323 p~~~~~~~-----~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vAk-----~L- 391 (464)
|.++.+.+ .++|+. |+. .+++|.+|+||||+|||+||||++||||||+.|+++|+ +|
T Consensus 309 p~~~~m~~n~~~~~ipw~~--------n~~----~~~aw~~G~tG~P~ida~m~~l~~~gw~h~~~R~~vasf~tr~~L~ 376 (531)
T KOG0133|consen 309 PYFDDMPGNKILLQIPWDK--------NPP----KLAAWLEGLTGYPWLDAGMRQLLASGWEHHRSRTIVASFLTRGDLL 376 (531)
T ss_pred ccccccccccccccCCccc--------Chh----hhHHHHcCCCCCCchhHHHHHHHHHHHHhcccchhhHhHhhcccee
Confidence 88766543 466752 332 48999999999999999999999999999999999984 67
Q ss_pred hcCCCCHHHHHHHHHHHhhccCcccCCCCCcccceeeec-CCCCCCcccccccc
Q 012429 392 LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALF 444 (464)
Q Consensus 392 idWr~G~~~a~~~~~~f~~~yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~ 444 (464)
|.|++|.+ +|++. ++|+|...|.|||||++| +.+.+++++++++-
T Consensus 377 i~w~eg~~-------~F~~~-llD~D~~~~agnW~~~S~~s~f~~~~~~~ysp~ 422 (531)
T KOG0133|consen 377 ISWREGLD-------VFMEY-LLDADSSKNAGNWMWLSSTSHFFDQFDRVYSPV 422 (531)
T ss_pred eeHHHHHH-------HHHHH-hcchhhhcCCCccceeccccccccccccccCHH
Confidence 99999998 99996 999999999999999997 99999999877664
No 8
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite.; InterPro: IPR005101 This entry represents a multi-helical domain composed of two all-alpha subdomains that is found as the C-terminal domain in cryptochrome proteins, as well as at the N-terminal of DNA photolyase where it acts as a FAD-binding domain (the N-terminal of DNA photolyase binds a light-harvesting cofactor). Photolyases and cryptochromes are related flavoproteins that bind FAD. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes (CRY1 and CRY2) are blue light photoreceptors that mediate blue light-induced gene expression [, ]. DNA photolyases are DNA repair enzymes that repair mismatched pyrimidine dimers induced by exposure to ultra-violet light. They bind to UV-damaged DNA containing pyrimidine dimers and, upon absorbing a near-UV photon (300 to 500 nm), they catalyse dimer splitting, breaking the cyclobutane ring joining the two pyrimidines of the dimer so as to split them into the constituent monomers; this process is called photoreactivation. DNA photolyases require two choromophore-cofactors for their activity. All monomers contain a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm [, ].; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 3ZXS_A 1DNP_A 2XRZ_B 2XRY_A 2VTB_A 2J4D_B 2IJG_X 3TVS_A 2E0I_D ....
Probab=100.00 E-value=5.5e-55 Score=428.72 Aligned_cols=191 Identities=29% Similarity=0.488 Sum_probs=155.0
Q ss_pred chHHHHHHHhccchhHHHhhhccCCCCCCCCCCCCCCCCcCchhhcCCccCHHHHHHHHHHHhh-h--CCccHHHHHHHh
Q 012429 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK-L--CPEAIDTFLEEL 308 (464)
Q Consensus 232 gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~-~--~~~~~~~fi~eL 308 (464)
|||++|+++| ++|+++++..|++.||.|+. ++||+|||||+||+||||+|++++.+... . ..+++++|++||
T Consensus 1 GGe~~A~~~L----~~Fl~~~l~~Y~~~r~~p~~-~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~f~~eL 75 (277)
T PF03441_consen 1 GGETAALKRL----EEFLKERLADYGEQRDDPAA-DGTSRLSPYLNFGCLSPREVYRAVKKAQEANDAHSESAEKFIREL 75 (277)
T ss_dssp SSHHHHHHHH----HHHHHHCGGGHHHHTT-TTS-TTS---HHHHHTTSS-HHHHHHHHHHHHHCHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHH----HHHHHHHHHhhchhccCCCc-CCcCcccHHHhCCCcCHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 7999999999 99999999999999999987 89999999999999999999999988764 1 125789999999
Q ss_pred hhhHHHHHHHHHhCCCCC-ccccc-----hHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchH
Q 012429 309 IVRRELADNFCFYQPNYD-SLKGA-----WEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGF 382 (464)
Q Consensus 309 ~wRrEf~~~~~~~~p~~~-~~~~~-----~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr 382 (464)
+|| ||++++++++|++. ..... .+|... ..+. +.+++|++|+||+||||||||||++|||||||
T Consensus 76 ~WR-ef~~~~~~~~p~~~~~~~~~~~~~~~~w~~~-----~~~~----~~~~~w~~G~TG~p~vDAamrqL~~tG~mHn~ 145 (277)
T PF03441_consen 76 IWR-EFYRQLLYHNPNLDMFENFNPKFRQIPWEDD-----RENP----ELFEAWCEGRTGYPLVDAAMRQLRQTGWMHNR 145 (277)
T ss_dssp HHH-HHHHHHHHHSGGCTCSSTSSTTCCCSHCBTS-----BSTH----HHHHHHHTT-SS-HHHHHHHHHHHHHS---HH
T ss_pred HHH-HHHHHHHHhCCcchhhhhccHHHHhhhhccc-----ccCH----HHHHHHHcCCCCChHHHHHHHHHHHhCcccHH
Confidence 998 99999999999876 32222 244310 0122 46999999999999999999999999999999
Q ss_pred HHHHHH----hhh-hcCCCCHHHHHHHHHHHhhccCcccCCCCCcccceeeec-CCCCCCcccccccce
Q 012429 383 MRMYWA----KKI-LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALFS 445 (464)
Q Consensus 383 ~Rm~vA----k~L-idWr~G~~~a~~~~~~f~~~yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~~ 445 (464)
+||+|| |+| |||+.|++ ||+++ |||||+|+|+|||||+|| |+|.+||+++||+..
T Consensus 146 ~R~~vasfl~k~l~i~W~~g~~-------~f~~~-liD~d~a~n~~~wqw~ag~g~d~~~~~r~~np~~ 206 (277)
T PF03441_consen 146 LRMIVASFLTKDLLIDWREGAE-------WFAEH-LIDYDPASNYGNWQWAAGTGTDAKPYFRIFNPVK 206 (277)
T ss_dssp HHHHHHHHHHHTSHBHHHHHHH-------HHHHH-HTT--HHHHHHHHHHHTTSSSTGCSTTTHHHHHH
T ss_pred HHHHHHHHHHHhccCCccccHH-------HHHHH-hhccCcchHHHHHHHHHhhccccCccccccCchH
Confidence 999877 567 89999998 99998 999999999999999999 999999999998754
No 9
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=254.99 Aligned_cols=375 Identities=15% Similarity=0.142 Sum_probs=269.5
Q ss_pred CcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecC-CccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCC
Q 012429 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD-QFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE 107 (464)
Q Consensus 29 ~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp-~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~ 107 (464)
+.+++|.--|.-.++++||.. . +....|+.|...-. .+...+..++.++..+|+++.++| +..|..+.+..-+
T Consensus 2 ~~~~~lvLgdQL~~~~~al~~--d---~~~~~vllvE~~~~a~~~r~HkqKl~lv~aAMR~Fad~L-raeG~~V~Y~~~~ 75 (505)
T COG3046 2 MSSVVLVLGDQLSEDHSALGD--D---RSQDGVLLVESAAEARYRRHHKQKLVLVFAAMRHFADEL-RAEGLKVRYERAD 75 (505)
T ss_pred CceEEEEeccccccccchhcc--C---cccCcEEEehhHhHhhhhhcchhhhHHHHHHHHHHHHHH-hhCCceeEEEEcC
Confidence 467999999999999998865 1 12334554443321 134578899999999999999999 9999999887754
Q ss_pred c---cchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHh-cCCCeEEEeeCC-eeEeCccccc----CCCCccchhhH
Q 012429 108 A---EDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAH-NVVPVWVASE----KLEYSAKTLRG 178 (464)
Q Consensus 108 ~---~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l-~~~v~~~~~~~~-~l~~~~~~~~----~~~~~~~t~~~ 178 (464)
+ ...|...++.+..+.|++.. |.. .....++++.- ..||++..+++. .+.++..+.+ +++.....||+
T Consensus 76 ~~~~~~~l~~~l~~~~~d~~~~~~-p~~--~~l~~~m~~L~~~~g~~i~~~~~~~Fl~s~a~f~~w~~~~k~~lme~FYr 152 (505)
T COG3046 76 DNSFGGELRRALEAYPGDRVQVQE-PGD--HRLEARMKSLSMALGIEITEVENPHFLCSRAEFDAWAGDRKPLLMESFYR 152 (505)
T ss_pred CcccchHHHHHHHhcCCCeEEEec-Ccc--hhHHHHHHhhhhhcCceeEEecCcceecCHHHhhhhhccCcchhhHHHHH
Confidence 4 45677788889999999875 443 33345555543 269999999886 6667765432 44556667999
Q ss_pred HHHhhCCCcCCC-----------------CCCCCCCCCcCCCCCCCCChhHHHHHHH-----hcCCCCCCCCCCCchHHH
Q 012429 179 KINKLLPEYLID-----------------YPMLEQPIEKWTGTRQSIDWDSIIAAVL-----RKGAEVPEIGWCESGEDA 236 (464)
Q Consensus 179 ~~~k~~~~~~~~-----------------~p~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~gGe~~ 236 (464)
..+|+++..+.. .|+....+.|....++++. .++...++ .+|. +. .+.|+..+++
T Consensus 153 ~mRkr~g~LM~~dqP~GGrWnFDaeNR~~~~pdL~~P~pl~fppd~~v-q~v~e~Ve~~f~~~~G~-~e-~F~wpvtr~~ 229 (505)
T COG3046 153 RMRKRTGILMEDDQPEGGRWNFDAENRKKLPPDLLPPKPLKFPPDEIV-QEVKERVERLFPDNFGQ-VE-GFGWPVTRTQ 229 (505)
T ss_pred HHHHhhceeccCCCCCCCcCCcCcccccCCCCcCCCCCCCCCCCcchh-HHHHHHHHhhCCCCCCc-cc-cCCCCCCHHH
Confidence 999887654431 1111001112111222221 12222222 1222 22 2468999999
Q ss_pred HHHHhccchhHHHhhhccCCCCCCCCCCCC---CCCCcCchhhcCCccCHHHHHHHHHHHhhh---CCccHHHHHHHhhh
Q 012429 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKP---RALSGLSPYLHFGQISAQRCALEARKARKL---CPEAIDTFLEELIV 310 (464)
Q Consensus 237 A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~---~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~---~~~~~~~fi~eL~w 310 (464)
|...| ++|+..+|.+|+.++|.+... -.+|.|||||+.|.|+|.+|+.++.++... +.+++|+||||||.
T Consensus 230 A~~~L----~~Fi~~~L~nFG~yQDam~~d~~~L~HSllS~alNigLL~PleVi~Aa~~Ay~~g~ipLN~VEGFvRQiiG 305 (505)
T COG3046 230 ALRAL----KHFIADRLPNFGSYQDAMSADDPHLWHSLLSFALNIGLLTPLEVIRAALKAYREGDIPLNSVEGFVRQIIG 305 (505)
T ss_pred HHHHH----HHHHHHhhhcCCcHHHHHhcCCchhHHHHHHHHhhccCCCHHHHHHHHHHhhccCCCchHHHHHHHHHHhh
Confidence 99999 999999999999999986431 279999999999999999999999887653 46789999999999
Q ss_pred hHHHHHHHHHhC-CCCCccccchHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHHh
Q 012429 311 RRELADNFCFYQ-PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK 389 (464)
Q Consensus 311 RrEf~~~~~~~~-p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vAk 389 (464)
||||++++++.. |+|.+-+ |- + | .++ .-....+|+|++.|++-+..+...+||.||+.|.||..
T Consensus 306 WREfmRgiY~~~~P~y~trN----~f----~-~---d~~---Lp~~yw~g~T~M~cl~~av~~v~d~gYAHHIqRLMV~g 370 (505)
T COG3046 306 WREFMRGIYWLKMPDYATRN----FF----N-A---DRK---LPPFYWTGQTKMACLAIAVGRVLDHGYAHHIQRLMVTG 370 (505)
T ss_pred HHHHHHHhhhhcCCchhhhh----hh----c-c---CCC---CCCccccCCcCchHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 999999998865 8886532 21 1 1 111 11224479999999999999999999999999999999
Q ss_pred hh-hcCCCCHHHHHHHHHHHhhccCcccCC----CCCcccceeeecCCC-CCCcc
Q 012429 390 KI-LEWTTGPEEALAIAIYLNDKYEIDGRD----PNGYVGCMWSICGVH-DQVSL 438 (464)
Q Consensus 390 ~L-idWr~G~~~a~~~~~~f~~~yllD~d~----a~n~g~wqw~agG~~-~r~~~ 438 (464)
|+ +-=--.|+ +...||+.- +||+.+ ||.+|+-|++.||.- ..||-
T Consensus 371 NfALl~G~dPd---~v~~Wf~~~-fiDAYdWV~~PNv~GM~qFADGG~iatKPYa 421 (505)
T COG3046 371 NFALLLGVDPD---AVDRWFMEV-FIDAYDWVELPNVRGMSQFADGGLIATKPYA 421 (505)
T ss_pred hHHHHhCCCHH---HHHHHHHHH-HhhHhhheecccccchhhcccCceeecCccc
Confidence 87 54444554 234599998 899874 999999999999865 77875
No 10
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=99.97 E-value=9.9e-32 Score=244.67 Aligned_cols=150 Identities=27% Similarity=0.378 Sum_probs=125.4
Q ss_pred EEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCc-cc--cchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCC
Q 012429 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF-LG--AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE 107 (464)
Q Consensus 31 ~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~-~~--~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~ 107 (464)
+|||||||||++||+||++|++ .+.+|+||||+||.. .. .|.+|.+|+++||.+|+++| +++|++|+++.|+
T Consensus 1 ~l~Wfr~DLRl~DN~aL~~A~~----~~~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~g~~L~v~~g~ 75 (165)
T PF00875_consen 1 VLVWFRRDLRLHDNPALHAAAQ----NGDPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESL-RKLGIPLLVLRGD 75 (165)
T ss_dssp EEEEESS--SSTT-HHHHHHHH----TTSEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHH-HHTTS-EEEEESS
T ss_pred CEEEEcCCCchhhhHHHHHHHH----cCCCeEEEEEecccccccccCcchHHHHHHHHHHHHHHHH-HhcCcceEEEecc
Confidence 6999999999999999999987 678999999999983 22 48999999999999999999 9999999999999
Q ss_pred ccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCcccc--cCCCCccchh-hHHHHhh
Q 012429 108 AEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS--EKLEYSAKTL-RGKINKL 183 (464)
Q Consensus 108 ~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~~--~~~~~~~~t~-~~~~~k~ 183 (464)
+.++|.+|+++++|+.|+++.++...++++|++|++.|+ .||.++.+++++|++|+.+. .+.+|++||+ +++|.+.
T Consensus 76 ~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~L~~~~~i~~~~~~~~~vFtpf~k~~~~~ 155 (165)
T PF00875_consen 76 PEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDHTLVPPDDIPKKDGEPYKVFTPFRKKWEKQ 155 (165)
T ss_dssp HHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--SSSS-HHHCHSTTSSSHSSHHHHHHHHHCH
T ss_pred hHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCcEEEeccccccCCCCCcccHHHHHHHHHhc
Confidence 999999999999999999998888889999999999996 79999999999999998653 3678999985 5778776
Q ss_pred CC
Q 012429 184 LP 185 (464)
Q Consensus 184 ~~ 185 (464)
+.
T Consensus 156 ~~ 157 (165)
T PF00875_consen 156 LL 157 (165)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 11
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms]
Probab=98.96 E-value=1.6e-12 Score=135.22 Aligned_cols=415 Identities=25% Similarity=0.243 Sum_probs=253.6
Q ss_pred ccccccccccCccCCCCC--cEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHH
Q 012429 12 QPGRIRVLKQGSLDKKRG--PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89 (464)
Q Consensus 12 ~~~r~~~~~~~~~~~~~~--~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L 89 (464)
...+|.++...-...... ...+|+-+|-++.||.++..|.+.+.+--.++--+++.-..++..+..+--+++.+.+.+
T Consensus 79 ~~~p~~vl~~~~~~~~~~~l~~~~~~~p~~~vrD~~~~~~a~~l~i~v~s~~s~~~~~~~~~i~~n~~k~pls~~~~~~~ 158 (531)
T KOG0133|consen 79 RGHPIAVLSRLLEQVGVQKLKFEYDMEPDGKVRDATIKSLATELGLSVVSPVSHTLYLPDKIIEANGGKPPLSYKTFRGV 158 (531)
T ss_pred eCCchHHHhhhhhccceeEEEEEEeccCccccccHHHHHHHHHhhhhhcccCchhhhcHHHHHHhcCCCCcccccccccc
Confidence 344666665532211111 246899999999999999999885443322322222222223456677778899999999
Q ss_pred HHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCcccccC
Q 012429 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVASEK 168 (464)
Q Consensus 90 ~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~~~~ 168 (464)
..+. ...-++.++..+...+..+.++...++..++...++.......-..+. +.. .....+..+.+...+.+.....
T Consensus 159 ~~~~-~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~v~~~e~l~~~~~~~~~~~-~~~g~s~al~~l~~~l~~~~~~an~~ 236 (531)
T KOG0133|consen 159 CQSM-SAPKIPALVLSGLAVEKHPNFLANSKASAVVPTLELLRFIPSNYGEVV-WRGGESEALKRLDAHLKVPLWVANLE 236 (531)
T ss_pred cccc-ccccccccccccccCCCChhhhhhcccccccCCchhhccCcccccccc-cCCcccchhHHHHHHhhHHHHHhhhh
Confidence 9999 888888888899999999999988888888776544332111000000 000 1112222222222221111111
Q ss_pred CCCccchhh-HHHHhhCCCcCCCCCCCCCCCCcCCCCCCCCChhHHHHHHH--hcC-C--CCCCCCCCCchHHHHHHHhc
Q 012429 169 LEYSAKTLR-GKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVL--RKG-A--EVPEIGWCESGEDAAMEVLK 242 (464)
Q Consensus 169 ~~~~~~t~~-~~~~k~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~~gGe~~A~~~L~ 242 (464)
.+|...+-+ ..-.+.+.+++.-.+.. ...+... .....+....+ ..+ . .+....|-..+++.|-...+
T Consensus 237 ~~~~~~~~~~~~s~~~Ls~yL~fg~~s--vr~~~~~----~~~k~V~~~~~~~s~~~es~~~~qv~Wre~~y~~~~n~p~ 310 (531)
T KOG0133|consen 237 LRYSNANSRVKISTTVLSPYLKFGCLS--VRYFYRC----VRLKQVKWKAKKNSLPPESLFLGQVAWREFFYTAAFNTPY 310 (531)
T ss_pred ccccccchhcCCCccccccceeeccce--eEeehhH----hHHHHHHHhhhcccCCccccccceeeeechhhHhhcCCcc
Confidence 112111111 00000111111111100 0001000 00011100000 000 0 01122233456777766662
Q ss_pred cchhHHHhhhccCCCCCCCCCCCCCCCCcCc--hhhcCCccCHHHHHHHHHHHhhhCCccHHHHHH---HhhhhHHHHHH
Q 012429 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLS--PYLHFGQISAQRCALEARKARKLCPEAIDTFLE---ELIVRRELADN 317 (464)
Q Consensus 243 ~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LS--PyL~~G~LS~R~v~~~~~~~~~~~~~~~~~fi~---eL~wRrEf~~~ 317 (464)
..+-++...+.++...+|.+.....++.++ |+|.+|+++.++.-....... .....|.. .++-|||-..+
T Consensus 311 -~~~m~~n~~~~~ipw~~n~~~~~aw~~G~tG~P~ida~m~~l~~~gw~h~~~R----~~vasf~tr~~L~i~w~eg~~~ 385 (531)
T KOG0133|consen 311 -FDDMPGNKILLQIPWDKNPPKLAAWLEGLTGYPWLDAGMRQLLASGWEHHRSR----TIVASFLTRGDLLISWREGLDV 385 (531)
T ss_pred -ccccccccccccCCcccChhhhHHHHcCCCCCCchhHHHHHHHHHHHHhcccc----hhhHhHhhccceeeeHHHHHHH
Confidence 112344456778888887776336889999 999999999988766654322 22344443 45555599999
Q ss_pred HHHhCCCCCccccchHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHHhhhhcCCCC
Q 012429 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTG 397 (464)
Q Consensus 318 ~~~~~p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vAk~LidWr~G 397 (464)
++.+..+++...+.-.|...+...+..++....+...+...+-|-.+..++..-+....|=|| .++|.|++.+..|+.+
T Consensus 386 F~~~llD~D~~~~agnW~~~S~~s~f~~~~~~~ysp~~~~kk~dP~g~yir~~lp~l~~~p~~-~i~~pW~~p~~~~~~~ 464 (531)
T KOG0133|consen 386 FMEYLLDADSSKNAGNWMWLSSTSHFFDQFDRVYSPVALGKKLDPDGLYIRQWLPELRSGPMH-FIYEPWAAPEGVQTAA 464 (531)
T ss_pred HHHHhcchhhhcCCCccceeccccccccccccccCHHHHhCcCCcchhhHHHHhHHHhcCCcc-eeccCCCCcHHHhhhh
Confidence 998888887755555576666444444555555678888888999999999999999999999 9999999999888889
Q ss_pred HHHHHHHHHHHhhccCcccCCCCCcccceeeecCCCCCCcccc
Q 012429 398 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQVSLYH 440 (464)
Q Consensus 398 ~~~a~~~~~~f~~~yllD~d~a~n~g~wqw~agG~~~r~~~~~ 440 (464)
+++++..+..++-+|-.|+..++-+++.+|+.||+++.+|.++
T Consensus 465 ~~~lg~~Yp~~iv~~~~a~k~~~e~~~~~~~~~~~~~~~~~~e 507 (531)
T KOG0133|consen 465 GELLGVDYPKPIVKLASAAKRNMEAMGCMWSIGAVHDMGWKEE 507 (531)
T ss_pred hhhhhcccchhhhhhHHhhHhHHHHHHHHHhhccccccccccc
Confidence 9999999999999989999999999999999999999888876
No 12
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=98.36 E-value=2.1e-06 Score=81.61 Aligned_cols=149 Identities=10% Similarity=0.087 Sum_probs=86.9
Q ss_pred EEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCC-ccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCC---
Q 012429 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ-FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE--- 107 (464)
Q Consensus 32 l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~-~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~--- 107 (464)
|+|.--|.-..++++|.. .. .+..|+.+.+.... +...|..|+.+++.||++++++| ++.|..+.++.-+
T Consensus 1 L~lIlgdQL~~~~~~l~~-~~----~~~~v~mvE~~~~~~~~~~HkqKl~l~~saMRhfa~~L-~~~G~~V~Y~~~~~~~ 74 (224)
T PF04244_consen 1 LRLILGDQLFEDHPALRD-DP----ADDRVLMVEVPEEFTYVPHHKQKLVLFFSAMRHFADEL-RAKGFRVHYIELDDPE 74 (224)
T ss_dssp EEE--TT---TT-HHHHT--T----TT-EEEEE--HHHHHSS---HHHHHHHHHHHHHHHHHH-HHTT--EEEE-TT-TT
T ss_pred CeEeccCCCCCccccccc-CC----CCCEEEEEEchHHhCcCcccHHHHHHHHHHHHHHHHHH-HhCCCEEEEEeCCCcc
Confidence 578888999999998865 21 23344444443221 34678999999999999999999 9999999998743
Q ss_pred ----ccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeE-eCcccc----cCCCCccchhh
Q 012429 108 ----AEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVV-PVWVAS----EKLEYSAKTLR 177 (464)
Q Consensus 108 ----~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~-~~~~~~----~~~~~~~~t~~ 177 (464)
-.+.|.+++++++++.|.+.. |.. ....++++++++ .||++..+++..++ ++..+. +++.+.+-.||
T Consensus 75 ~~~s~~~~L~~~~~~~~~~~~~~~~-P~d--~~l~~~l~~~~~~~~i~~~~~~~~~Fl~s~~~f~~~~~~~k~~~Me~FY 151 (224)
T PF04244_consen 75 NTQSFEDALARALKQHGIDRLHVME-PGD--YRLEQRLESLAQQLGIPLEVLEDPHFLTSREEFAEWFEGRKRLRMEYFY 151 (224)
T ss_dssp --SSHHHHHHHHHHHH----EEEE---S---HHHHHHHHH----SSS-EEEE--TTSSS-HHHHHHHHTT-SS--HHHHH
T ss_pred ccccHHHHHHHHHHHcCCCEEEEEC-CCC--HHHHHHHHhhhcccCCceEEeCCCCccCCHHHHHHHHccCCceeHHHHH
Confidence 246788888999999999875 543 455678888875 79999999887555 554432 24667777899
Q ss_pred HHHHhhCCCcCC
Q 012429 178 GKINKLLPEYLI 189 (464)
Q Consensus 178 ~~~~k~~~~~~~ 189 (464)
+.++|+++.++.
T Consensus 152 R~mRkr~~ILmd 163 (224)
T PF04244_consen 152 REMRKRFGILMD 163 (224)
T ss_dssp HHHHHHHTTTE-
T ss_pred HHHHHHcCcccc
Confidence 999999887774
No 13
>PRK09982 universal stress protein UspD; Provisional
Probab=92.91 E-value=0.64 Score=40.65 Aligned_cols=108 Identities=16% Similarity=0.075 Sum_probs=66.2
Q ss_pred CHHHHHHHHHhhhCCCCEEEEEEecCCcc---cc--c--hh----hHHHHHHHHHHHHHHHHhhcCCcEEEEeCCccchH
Q 012429 44 NWALIHAVDQANKNNVPVAVAFNLFDQFL---GA--K--AR----QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112 (464)
Q Consensus 44 N~aL~~A~~~a~~~~~~vl~vfi~dp~~~---~~--~--~~----r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~~l 112 (464)
..||..|++.|.+.+..|..+++.++... .. . .. ......+.|.++.+++ ...++...+..|+|.+.|
T Consensus 17 ~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~v~~G~p~~~I 95 (142)
T PRK09982 17 ALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNI-QWPKTKLRIERGEMPETL 95 (142)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhc-CCCcceEEEEecCHHHHH
Confidence 57888899888878888999999875311 00 0 01 1111222344444444 434566778889999999
Q ss_pred HHHHHHhCccEEEEcCCcChHHHHHHHHHHHH-hc-CCCeEEEe
Q 012429 113 PNFVRECGASLLVTDFSPLREIRRCKDKICNR-VS-DSVTIHEV 154 (464)
Q Consensus 113 ~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~-l~-~~v~~~~~ 154 (464)
.+.+++.+++-|+.-..-.. ..+.- .+.+. ++ ..|+|..+
T Consensus 96 ~~~A~~~~aDLIVmG~~~~~-~~~~~-~va~~V~~~s~~pVLvv 137 (142)
T PRK09982 96 LEIMQKEQCDLLVCGHHHSF-INRLM-PAYRGMINKMSADLLIV 137 (142)
T ss_pred HHHHHHcCCCEEEEeCChhH-HHHHH-HHHHHHHhcCCCCEEEe
Confidence 99999999999998432211 12222 24443 33 46776554
No 14
>PRK15005 universal stress protein F; Provisional
Probab=92.13 E-value=1.2 Score=38.51 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhCCCCEEEEEEecCCcc----cc-----chhhHHH---HHHHHHHHHHHHHhhcCC--cEEEEeCCccc
Q 012429 45 WALIHAVDQANKNNVPVAVAFNLFDQFL----GA-----KARQLGF---MLRGLRLLQRNIEETFQI--LFFLFQGEAED 110 (464)
Q Consensus 45 ~aL~~A~~~a~~~~~~vl~vfi~dp~~~----~~-----~~~r~~F---l~esL~~L~~~L~~~~G~--~L~v~~G~~~~ 110 (464)
.+|..|.+.|.+.+.+|..+++.++... .. ....... ..+.|..+.+++ ...|. ..++..|+|.+
T Consensus 19 ~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~v~~G~p~~ 97 (144)
T PRK15005 19 RVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKF-KLPTDRVHVHVEEGSPKD 97 (144)
T ss_pred HHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHh-CCCCCceEEEEeCCCHHH
Confidence 5777888888777788999999875311 00 0011111 223444444444 33343 56777899999
Q ss_pred hHHHHHHHhCccEEEEc
Q 012429 111 NIPNFVRECGASLLVTD 127 (464)
Q Consensus 111 ~l~~l~~~~~~~~V~~~ 127 (464)
.|.+.+++.+++-|+.-
T Consensus 98 ~I~~~a~~~~~DLIV~G 114 (144)
T PRK15005 98 RILELAKKIPADMIIIA 114 (144)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999984
No 15
>PRK10116 universal stress protein UspC; Provisional
Probab=91.71 E-value=5.9 Score=34.03 Aligned_cols=111 Identities=16% Similarity=0.085 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHhhhCCCCEEEEEEecCCcc--ccc-----hhhHHHHHHHHHHHHHHHHhhcCCc---EEEEeCCccch
Q 012429 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFL--GAK-----ARQLGFMLRGLRLLQRNIEETFQIL---FFLFQGEAEDN 111 (464)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~--~~~-----~~r~~Fl~esL~~L~~~L~~~~G~~---L~v~~G~~~~~ 111 (464)
....+|..|+..|.+.+.+|..+++.++... ... ..+....-+..+.|++.. .+.|++ .++..|++.+.
T Consensus 15 ~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~G~~~~~ 93 (142)
T PRK10116 15 ESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLI-QDADYPIEKTFIAYGELSEH 93 (142)
T ss_pred chHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEEecCCHHHH
Confidence 3468999999988877778888888765311 110 111111112223333334 455653 45567999999
Q ss_pred HHHHHHHhCccEEEEcCC-cChHHHHHHHHHHHH-hc-CCCeEEEee
Q 012429 112 IPNFVRECGASLLVTDFS-PLREIRRCKDKICNR-VS-DSVTIHEVD 155 (464)
Q Consensus 112 l~~l~~~~~~~~V~~~~~-p~~~~~~rd~~v~~~-l~-~~v~~~~~~ 155 (464)
+.+.+++.+++-|+.... .....+- -.+.+. +. .+|++..+.
T Consensus 94 I~~~a~~~~~DLiV~g~~~~~~~~~~--~s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 94 ILEVCRKHHFDLVICGNHNHSFFSRA--SCSAKRVIASSEVDVLLVP 138 (142)
T ss_pred HHHHHHHhCCCEEEEcCCcchHHHHH--HHHHHHHHhcCCCCEEEEe
Confidence 999999999999999432 2222222 234333 33 577776553
No 16
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=91.70 E-value=2.1 Score=37.08 Aligned_cols=84 Identities=12% Similarity=0.025 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHhhhCCCCEEEEEEecCCcccc---c-----h----hhHHHHHHHHHHHHHHHHhhcCCcE--EEEeC-C
Q 012429 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---K-----A----RQLGFMLRGLRLLQRNIEETFQILF--FLFQG-E 107 (464)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~---~-----~----~r~~Fl~esL~~L~~~L~~~~G~~L--~v~~G-~ 107 (464)
-..||..|++.|.+.+.+|..+++.++..... + . ....-..+-|....+.+ ++.|++. ++..| +
T Consensus 12 s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~g~~ 90 (146)
T cd01989 12 SKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFC-SRKGVQCEDVVLEDDD 90 (146)
T ss_pred cHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCeEEEEEEeCCc
Confidence 44688888888877788999999988642211 0 0 00112233444455555 5566543 44555 8
Q ss_pred ccchHHHHHHHhCccEEEEc
Q 012429 108 AEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 108 ~~~~l~~l~~~~~~~~V~~~ 127 (464)
+.+.|.+.+++.+++.|+.-
T Consensus 91 ~~~~I~~~a~~~~~dlIV~G 110 (146)
T cd01989 91 VAKAIVEYVADHGITKLVMG 110 (146)
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 89999999999999999984
No 17
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=91.23 E-value=2.4 Score=35.66 Aligned_cols=83 Identities=13% Similarity=0.008 Sum_probs=58.6
Q ss_pred CHHHHHHHHHhhhCCCCEEEEEEecCCccc-c--chhhHHHHHHHHHHHHHHHHhhcCCcEEEE---eCCccchHHHHHH
Q 012429 44 NWALIHAVDQANKNNVPVAVAFNLFDQFLG-A--KARQLGFMLRGLRLLQRNIEETFQILFFLF---QGEAEDNIPNFVR 117 (464)
Q Consensus 44 N~aL~~A~~~a~~~~~~vl~vfi~dp~~~~-~--~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~---~G~~~~~l~~l~~ 117 (464)
..+|..|...|...+.+|..+++.++.... . ......-..+.+..+.+.+ ++.|++.... .|++.+.|.++++
T Consensus 13 ~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~I~~~a~ 91 (132)
T cd01988 13 RDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIA-ASLGVPVHTIIRIDHDIASGILRTAK 91 (132)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHh-hhcCCceEEEEEecCCHHHHHHHHHH
Confidence 357788887777777789999999864211 0 1122334556677777777 7788875533 3788888999999
Q ss_pred HhCccEEEEc
Q 012429 118 ECGASLLVTD 127 (464)
Q Consensus 118 ~~~~~~V~~~ 127 (464)
+.+++-|+.-
T Consensus 92 ~~~~dlIV~G 101 (132)
T cd01988 92 ERQADLIIMG 101 (132)
T ss_pred hcCCCEEEEe
Confidence 9999999983
No 18
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=90.62 E-value=2.6 Score=35.41 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEE-eCCccchHHHHHHHhCc
Q 012429 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLF-QGEAEDNIPNFVRECGA 121 (464)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~-~G~~~~~l~~l~~~~~~ 121 (464)
...+|..|+..|.+.+.++..|++.++...... ... .+-|..+.+.. ++.|++..+. .|++.+.|.+.++++++
T Consensus 12 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~-~~~---~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~I~~~~~~~~~ 86 (124)
T cd01987 12 AERLIRRAARLADRLKAPWYVVYVETPRLNRLS-EAE---RRRLAEALRLA-EELGAEVVTLPGDDVAEAIVEFAREHNV 86 (124)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEecCccccCC-HHH---HHHHHHHHHHH-HHcCCEEEEEeCCcHHHHHHHHHHHcCC
Confidence 457888888888777889999999987532111 111 23455666666 7778776554 46788999999999999
Q ss_pred cEEEEc
Q 012429 122 SLLVTD 127 (464)
Q Consensus 122 ~~V~~~ 127 (464)
+.|+.-
T Consensus 87 dllviG 92 (124)
T cd01987 87 TQIVVG 92 (124)
T ss_pred CEEEeC
Confidence 999994
No 19
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=90.22 E-value=3.8 Score=33.73 Aligned_cols=84 Identities=17% Similarity=0.101 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHhhhCCCCEEEEEEecCCcccc---chhhHHHHHHHHHHHHHHHHhhcCCcEE--EEeCCccchHHHHHH
Q 012429 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGLRLLQRNIEETFQILFF--LFQGEAEDNIPNFVR 117 (464)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~---~~~r~~Fl~esL~~L~~~L~~~~G~~L~--v~~G~~~~~l~~l~~ 117 (464)
...++..|...|.+.+.++..+++.++..... ......-..+.|..+...+ ...|+++. +..|++.+.|.+.++
T Consensus 12 ~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 90 (130)
T cd00293 12 SERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREAL-AEAGVKVETVVLEGDPAEAILEAAE 90 (130)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHH-hcCCCceEEEEecCCCHHHHHHHHH
Confidence 34567777777877788999999987643211 1122233456777777766 66788764 446888888999999
Q ss_pred HhCccEEEEc
Q 012429 118 ECGASLLVTD 127 (464)
Q Consensus 118 ~~~~~~V~~~ 127 (464)
+.+++.|+..
T Consensus 91 ~~~~dlvvig 100 (130)
T cd00293 91 ELGADLIVMG 100 (130)
T ss_pred HcCCCEEEEc
Confidence 9999999985
No 20
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=89.59 E-value=3.1 Score=42.58 Aligned_cols=108 Identities=12% Similarity=0.109 Sum_probs=64.2
Q ss_pred CHHHHHHHHHhhhC--CCCEEEEEEecCCccccchhhH-HHHHHHHHHHHHHHHhh------cCCcEEEEe---------
Q 012429 44 NWALIHAVDQANKN--NVPVAVAFNLFDQFLGAKARQL-GFMLRGLRLLQRNIEET------FQILFFLFQ--------- 105 (464)
Q Consensus 44 N~aL~~A~~~a~~~--~~~vl~vfi~dp~~~~~~~~r~-~Fl~esL~~L~~~L~~~------~G~~L~v~~--------- 105 (464)
..|+.+|++.|.+. +..|..|++.++.......... .---+-+...++.+ ++ .|++.....
T Consensus 19 ~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~-~~~l~~~~~gV~ve~~vv~~~~~~~~ 97 (357)
T PRK12652 19 RQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWA-TEDLGDDASSVTIETALLGTDEYLFG 97 (357)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHH-HHhhhcccCCCceEEEEEeccccccC
Confidence 35888999888774 4689999999864321111000 11112344555554 33 377654332
Q ss_pred -CCccchHHHHHHHhCccEEEEc--CCcChHHHHHHHHHHHHhc-CCCeEEE
Q 012429 106 -GEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS-DSVTIHE 153 (464)
Q Consensus 106 -G~~~~~l~~l~~~~~~~~V~~~--~~p~~~~~~rd~~v~~~l~-~~v~~~~ 153 (464)
|+|.+.|.+.+++++++.|+.+ |.|... ...-+-+...|. .|+.+..
T Consensus 98 ~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 148 (357)
T PRK12652 98 PGDYAEVLIAYAEEHGIDRVVLDPEYNPGGT-APMLQPLERELARAGITYEE 148 (357)
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCCCCC-CcccchHHHHHHhcCCceec
Confidence 8999999999999999999996 445332 112233333342 5666654
No 21
>PRK15456 universal stress protein UspG; Provisional
Probab=87.65 E-value=4.2 Score=35.18 Aligned_cols=82 Identities=16% Similarity=0.055 Sum_probs=53.0
Q ss_pred CHHHHHHHHHhhhCCCCEEEEEEecCCccc------cc-----hhhHHHHHHHHHHHHHHHHhhcCC--cEEEEeCCccc
Q 012429 44 NWALIHAVDQANKNNVPVAVAFNLFDQFLG------AK-----ARQLGFMLRGLRLLQRNIEETFQI--LFFLFQGEAED 110 (464)
Q Consensus 44 N~aL~~A~~~a~~~~~~vl~vfi~dp~~~~------~~-----~~r~~Fl~esL~~L~~~L~~~~G~--~L~v~~G~~~~ 110 (464)
..+|.+|...|... ..|..++++++.... .. .....-..+.|.++.+.+ ...|. ..++..|+|.+
T Consensus 18 ~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~v~~~v~~G~~~~ 95 (142)
T PRK15456 18 DKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHF-TIDPSRIKQHVRFGSVRD 95 (142)
T ss_pred HHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHh-CCCCcceEEEEcCCChHH
Confidence 36778888877664 478889998864210 00 011122333455555555 44444 45667899999
Q ss_pred hHHHHHHHhCccEEEEc
Q 012429 111 NIPNFVRECGASLLVTD 127 (464)
Q Consensus 111 ~l~~l~~~~~~~~V~~~ 127 (464)
.|.+.+++.+++-|+.-
T Consensus 96 ~I~~~a~~~~~DLIVmG 112 (142)
T PRK15456 96 EVNELAEELGADVVVIG 112 (142)
T ss_pred HHHHHHhhcCCCEEEEc
Confidence 99999999999999983
No 22
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=85.61 E-value=5.3 Score=33.20 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHH--------HHHHhhcC--CcEEEEeCCccchHH
Q 012429 44 NWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ--------RNIEETFQ--ILFFLFQGEAEDNIP 113 (464)
Q Consensus 44 N~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~--------~~L~~~~G--~~L~v~~G~~~~~l~ 113 (464)
..++..|...|.+.+.+|..+++.++...................-. .......+ ....+..|++.+.+.
T Consensus 16 ~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (140)
T PF00582_consen 16 RRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVIEVVIESGDVADAII 95 (140)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhccceeEEEEEeeccchhhh
Confidence 46777888888777889999999997643211100000000000000 11101222 344556699999999
Q ss_pred HHHHHhCccEEEEc
Q 012429 114 NFVRECGASLLVTD 127 (464)
Q Consensus 114 ~l~~~~~~~~V~~~ 127 (464)
+++++.+++.|+.-
T Consensus 96 ~~~~~~~~dliv~G 109 (140)
T PF00582_consen 96 EFAEEHNADLIVMG 109 (140)
T ss_dssp HHHHHTTCSEEEEE
T ss_pred hccccccceeEEEe
Confidence 99999999999994
No 23
>PRK10490 sensor protein KdpD; Provisional
Probab=85.03 E-value=5.9 Score=45.70 Aligned_cols=119 Identities=11% Similarity=0.113 Sum_probs=73.1
Q ss_pred CcEEEEEcCCCCccCCHHH-HHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC-
Q 012429 29 GPVVYWMFRDQRVRDNWAL-IHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG- 106 (464)
Q Consensus 29 ~~~l~WfrrDLRl~DN~aL-~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G- 106 (464)
..+||=.-.+ ..+..| ..|.+.|.+.+.++++|||-++...........-+.+.++ |.++| |...+...|
T Consensus 251 eriLV~v~~~---~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~-lA~~l----Ga~~~~~~~~ 322 (895)
T PRK10490 251 DAILLCIGHN---TGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALR-LAQEL----GAETATLSDP 322 (895)
T ss_pred CeEEEEECCC---cchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHH-HHHHc----CCEEEEEeCC
Confidence 3345544433 234444 5667788888889999999887533233333334555553 55555 999877776
Q ss_pred CccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHH-hc--CCCeEEEeeC
Q 012429 107 EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR-VS--DSVTIHEVDA 156 (464)
Q Consensus 107 ~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~-l~--~~v~~~~~~~ 156 (464)
+..+.|.+++++.+++.|+.-.+.-... -+...+.+. ++ .+|.++.+.+
T Consensus 323 dva~~i~~~A~~~~vt~IViG~s~~~~~-~~~~s~~~~l~r~~~~idi~iv~~ 374 (895)
T PRK10490 323 AEEKAVLRYAREHNLGKIIIGRRASRRW-WRRESFADRLARLGPDLDLVIVAL 374 (895)
T ss_pred CHHHHHHHHHHHhCCCEEEECCCCCCCC-ccCCCHHHHHHHhCCCCCEEEEeC
Confidence 5778899999999999999954322111 001122222 22 5788888753
No 24
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=83.00 E-value=8.8 Score=36.56 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe--CCcc---chHHHHHHHhC
Q 012429 46 ALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--GEAE---DNIPNFVRECG 120 (464)
Q Consensus 46 aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--G~~~---~~l~~l~~~~~ 120 (464)
||+.|.+ . -.|+.++..-|... .+..|-...+..++.+- +.+|+||+... |... +.+.+.+++.+
T Consensus 16 Al~~~~~----~-~~V~~L~~~~~~~~----~s~~~h~~~~~~~~~qA-~algiPl~~~~~~~~~e~~~~~l~~~l~~~g 85 (222)
T TIGR00289 16 ALYKALE----E-HEVISLVGVFSENE----ESYMFHSPNLHLTDLVA-EAVGIPLIKLYTSGEEEKEVEDLAGQLGELD 85 (222)
T ss_pred HHHHHHH----c-CeeEEEEEEcCCCC----CccccccCCHHHHHHHH-HHcCCCeEEEEcCCchhHHHHHHHHHHHHcC
Confidence 4454544 3 45666766665421 12333333666777777 88999998765 3223 34444556779
Q ss_pred ccEEEEcCCcChHHHHHHHHHHHHhcCCCeE
Q 012429 121 ASLLVTDFSPLREIRRCKDKICNRVSDSVTI 151 (464)
Q Consensus 121 ~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~ 151 (464)
++.|++-.-...+.+.|.+++.+.+ |+..
T Consensus 86 v~~vv~GdI~s~~qr~~~e~vc~~~--gl~~ 114 (222)
T TIGR00289 86 VEALCIGAIESNYQKSRIDKVCREL--GLKS 114 (222)
T ss_pred CCEEEECccccHHHHHHHHHHHHHc--CCEE
Confidence 9999993212333455666665544 6654
No 25
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=82.68 E-value=9.3 Score=35.54 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=49.3
Q ss_pred hCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe--CCc---cch----HHHHHHHhCccEEEE
Q 012429 56 KNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--GEA---EDN----IPNFVRECGASLLVT 126 (464)
Q Consensus 56 ~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--G~~---~~~----l~~l~~~~~~~~V~~ 126 (464)
+.|..|+++++..|.... +..|-...+..+++.. +++|+++++.. ++. .+. |.++.++ +++.|++
T Consensus 21 ~~G~~v~~l~~~~~~~~~----~~~~h~~~~e~~~~~A-~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g~~~vv~ 94 (194)
T cd01994 21 EEGHEVVALLNLTPEEGS----SMMYHTVNHELLELQA-EAMGIPLIRIEISGEEEDEVEDLKELLRKLKEE-GVDAVVF 94 (194)
T ss_pred HcCCEEEEEEEEecCCCC----cccccccCHHHHHHHH-HHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHc-CCCEEEE
Confidence 367788888887664211 1112223566667777 88899998876 221 122 3333334 6888888
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCeE
Q 012429 127 DFSPLREIRRCKDKICNRVSDSVTI 151 (464)
Q Consensus 127 ~~~p~~~~~~rd~~v~~~l~~~v~~ 151 (464)
-.-.....+.|.+++.+.+ |++.
T Consensus 95 G~i~sd~~~~~~e~~~~~~--gl~~ 117 (194)
T cd01994 95 GAILSEYQRTRVERVCERL--GLEP 117 (194)
T ss_pred CccccHHHHHHHHHHHHHc--CCEE
Confidence 3212223455666665544 6654
No 26
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=82.64 E-value=11 Score=32.42 Aligned_cols=109 Identities=12% Similarity=-0.005 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHhhhCCCCEEEEEEecCC-ccccc-------hhhHHHHHHHHHHHHHHHHhhcCCcE---EEEeCCccch
Q 012429 43 DNWALIHAVDQANKNNVPVAVAFNLFDQ-FLGAK-------ARQLGFMLRGLRLLQRNIEETFQILF---FLFQGEAEDN 111 (464)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~-~~~~~-------~~r~~Fl~esL~~L~~~L~~~~G~~L---~v~~G~~~~~ 111 (464)
...||..|...|.+.+..|..+++..+. ....+ ..+....-+....|++-+ ++.|++. ++..|+|.+.
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~G~p~~~ 94 (144)
T PRK15118 16 SKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELS-TNAGYPITETLSGSGDLGQV 94 (144)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHH-HhCCCCceEEEEEecCHHHH
Confidence 4578888888887777788888883221 11000 011111122223344444 5557653 3457999999
Q ss_pred HHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHh-c-CCCeEEEe
Q 012429 112 IPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-S-DSVTIHEV 154 (464)
Q Consensus 112 l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l-~-~~v~~~~~ 154 (464)
|.+.+++.+++-|+.-..... .... -.+.+.+ . ..|++..+
T Consensus 95 I~~~a~~~~~DLIV~Gs~~~~-~~~l-gSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 95 LVDAIKKYDMDLVVCGHHQDF-WSKL-MSSARQLINTVHVDMLIV 137 (144)
T ss_pred HHHHHHHhCCCEEEEeCcccH-HHHH-HHHHHHHHhhCCCCEEEe
Confidence 999999999999998432221 1212 2444443 3 45666544
No 27
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=80.04 E-value=27 Score=39.33 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=73.6
Q ss_pred CCHHHH-HHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC-CccchHHHHHHHhC
Q 012429 43 DNWALI-HAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG-EAEDNIPNFVRECG 120 (464)
Q Consensus 43 DN~aL~-~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G-~~~~~l~~l~~~~~ 120 (464)
.|..|. .|++.|.+.+.+..+|||-.|+....+.....-+ +....|.++| |.....+.| +..+.+.+.++.++
T Consensus 260 ~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l-~~~~~Lae~l----Gae~~~l~~~dv~~~i~~ya~~~~ 334 (890)
T COG2205 260 GSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRL-HENLRLAEEL----GAEIVTLYGGDVAKAIARYAREHN 334 (890)
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHH-HHHHHHHHHh----CCeEEEEeCCcHHHHHHHHHHHcC
Confidence 356664 4566788888899999999998654433333333 3444566666 999988885 45678999999999
Q ss_pred ccEEEEcCCcChHHHH-HHHHHHHHh-c--CCCeEEEeeCC
Q 012429 121 ASLLVTDFSPLREIRR-CKDKICNRV-S--DSVTIHEVDAH 157 (464)
Q Consensus 121 ~~~V~~~~~p~~~~~~-rd~~v~~~l-~--~~v~~~~~~~~ 157 (464)
++.|+.-...-+.++. ....+...+ . .++.++.+...
T Consensus 335 ~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii~~~ 375 (890)
T COG2205 335 ATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIVALD 375 (890)
T ss_pred CeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEeeCC
Confidence 9999997654443322 123444443 2 57888877554
No 28
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=78.55 E-value=17 Score=34.65 Aligned_cols=94 Identities=14% Similarity=0.182 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe--CC---ccchHHHHHHHh
Q 012429 45 WALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--GE---AEDNIPNFVREC 119 (464)
Q Consensus 45 ~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--G~---~~~~l~~l~~~~ 119 (464)
-||+.|.+ . ..|+.+..+-|... .+..|-.-.+.-++.+- +.+|+||+... +. -.+.+.+++++.
T Consensus 15 ~al~~a~~----~-~~v~~L~t~~~~~~----~s~~~H~~~~~~~~~qA-~algipl~~~~~~~~~e~~~e~l~~~l~~~ 84 (223)
T TIGR00290 15 LALYHALK----E-HEVISLVNIMPENE----ESYMFHGVNAHLTDLQA-ESIGIPLIKLYTEGTEEDEVEELKGILHTL 84 (223)
T ss_pred HHHHHHHH----h-CeeEEEEEEecCCC----CcccccccCHHHHHHHH-HHcCCCeEEeecCCCccHHHHHHHHHHHHc
Confidence 35566554 4 45565555444321 12222222444445555 77899997643 33 344555666777
Q ss_pred CccEEEE-cCCcChHHHHHHHHHHHHhcCCCeE
Q 012429 120 GASLLVT-DFSPLREIRRCKDKICNRVSDSVTI 151 (464)
Q Consensus 120 ~~~~V~~-~~~p~~~~~~rd~~v~~~l~~~v~~ 151 (464)
+++.|++ +. ...+.+.|.+++.+.+ |++.
T Consensus 85 gv~~vv~GdI-~s~~qr~~~e~v~~~l--gl~~ 114 (223)
T TIGR00290 85 DVEAVVFGAI-YSEYQKTRIERVCREL--GLKS 114 (223)
T ss_pred CCCEEEECCc-ccHHHHHHHHHHHHhc--CCEE
Confidence 9999999 43 2333455556665544 6654
No 29
>PRK11175 universal stress protein UspE; Provisional
Probab=73.24 E-value=26 Score=34.39 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhhC-CCCEEEEEEecCCccc---------cchhhHHHHHHHHHHHHHHHHhhcCCc---EEEEeCCccch
Q 012429 45 WALIHAVDQANKN-NVPVAVAFNLFDQFLG---------AKARQLGFMLRGLRLLQRNIEETFQIL---FFLFQGEAEDN 111 (464)
Q Consensus 45 ~aL~~A~~~a~~~-~~~vl~vfi~dp~~~~---------~~~~r~~Fl~esL~~L~~~L~~~~G~~---L~v~~G~~~~~ 111 (464)
.+|..|...|... +..+..++++++.... ........--+....+++-+ ++.|++ .++..|++.+.
T Consensus 174 ~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~v~~G~~~~~ 252 (305)
T PRK11175 174 KLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKALR-QKFGIDEEQTHVEEGLPEEV 252 (305)
T ss_pred HHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHHH-HHhCCChhheeeccCCHHHH
Confidence 4777788777666 6788888887643210 01111111112333444444 555664 56678999999
Q ss_pred HHHHHHHhCccEEEEc
Q 012429 112 IPNFVRECGASLLVTD 127 (464)
Q Consensus 112 l~~l~~~~~~~~V~~~ 127 (464)
|.+.+++.+++-|+.-
T Consensus 253 I~~~a~~~~~DLIVmG 268 (305)
T PRK11175 253 IPDLAEHLDAELVILG 268 (305)
T ss_pred HHHHHHHhCCCEEEEC
Confidence 9999999999999983
No 30
>PRK11175 universal stress protein UspE; Provisional
Probab=71.97 E-value=34 Score=33.58 Aligned_cols=118 Identities=15% Similarity=0.055 Sum_probs=68.1
Q ss_pred CCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcc------ccchh---hHHH---HHHHHHHHHHHHHhhcCCcEEE--E
Q 012429 39 QRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL------GAKAR---QLGF---MLRGLRLLQRNIEETFQILFFL--F 104 (464)
Q Consensus 39 LRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~------~~~~~---r~~F---l~esL~~L~~~L~~~~G~~L~v--~ 104 (464)
.=-....||..|+..|.+.+.++..+++.++... ..... +... ..+.|....+.+ +..|++... .
T Consensus 12 ~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~v~ 90 (305)
T PRK11175 12 PNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPY-LDAGIPIEIKVV 90 (305)
T ss_pred CCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCceEEEEe
Confidence 3335678999999998888878887777643211 00110 1111 123344444555 556766543 3
Q ss_pred -eCCccchHHHHHHHhCccEEEEcCC-cChHHHHHHHHH-HHHhc-CCCeEEEeeCC
Q 012429 105 -QGEAEDNIPNFVRECGASLLVTDFS-PLREIRRCKDKI-CNRVS-DSVTIHEVDAH 157 (464)
Q Consensus 105 -~G~~~~~l~~l~~~~~~~~V~~~~~-p~~~~~~rd~~v-~~~l~-~~v~~~~~~~~ 157 (464)
.|++.+.|.+.+++.+++-|+.... ........-..+ .+.+. ..|++..+...
T Consensus 91 ~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~ 147 (305)
T PRK11175 91 WHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQ 147 (305)
T ss_pred cCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEeccc
Confidence 5899999999999999999999532 221111111111 22233 46888777553
No 31
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=67.85 E-value=39 Score=32.11 Aligned_cols=97 Identities=14% Similarity=0.218 Sum_probs=56.5
Q ss_pred CHHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe--C---CccchHHHHHHH
Q 012429 44 NWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--G---EAEDNIPNFVRE 118 (464)
Q Consensus 44 N~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--G---~~~~~l~~l~~~ 118 (464)
+-||+.|.+ .|-.|..+.++-|...+ .+.|-.-.+.-....- +..|++++... | .-.+.|.++++.
T Consensus 14 ~~Al~~a~~----~G~eV~~Ll~~~p~~~d----S~m~H~~n~~~~~~~A-e~~gi~l~~~~~~g~~e~eve~L~~~l~~ 84 (223)
T COG2102 14 FYALYLALE----EGHEVVYLLTVKPENGD----SYMFHTPNLELAELQA-EAMGIPLVTFDTSGEEEREVEELKEALRR 84 (223)
T ss_pred HHHHHHHHH----cCCeeEEEEEEecCCCC----eeeeeccchHHHHHHH-HhcCCceEEEecCccchhhHHHHHHHHHh
Confidence 456666665 67788888887775321 1112222333333333 55799987765 3 134556667788
Q ss_pred hCccEEEEcCCcChHHHHHHHHHHHHhcCCCeE
Q 012429 119 CGASLLVTDFSPLREIRRCKDKICNRVSDSVTI 151 (464)
Q Consensus 119 ~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~ 151 (464)
.+++.|++-.-...+.+.|.++|++.+ |+++
T Consensus 85 l~~d~iv~GaI~s~yqk~rve~lc~~l--Gl~~ 115 (223)
T COG2102 85 LKVDGIVAGAIASEYQKERVERLCEEL--GLKV 115 (223)
T ss_pred CcccEEEEchhhhHHHHHHHHHHHHHh--CCEE
Confidence 889999984323444455556665544 6655
No 32
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=65.31 E-value=12 Score=35.56 Aligned_cols=61 Identities=18% Similarity=0.395 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCcEEEEe--CCcc---chHHHHHHHhCccEEEE-cCCcChHHHHHHHHHHHHhcCCCeE
Q 012429 87 RLLQRNIEETFQILFFLFQ--GEAE---DNIPNFVRECGASLLVT-DFSPLREIRRCKDKICNRVSDSVTI 151 (464)
Q Consensus 87 ~~L~~~L~~~~G~~L~v~~--G~~~---~~l~~l~~~~~~~~V~~-~~~p~~~~~~rd~~v~~~l~~~v~~ 151 (464)
.-++.+- +.+|+||+... |+.. +.+.+.+++.+++.|++ +. ...+.+.|.+++.+.+ |++.
T Consensus 48 ~~~~~qA-~algipl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~GdI-~~~~~r~~~e~vc~~l--Gl~~ 114 (218)
T PF01902_consen 48 ELIEAQA-EALGIPLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGDI-DSEYQRNWVERVCERL--GLEA 114 (218)
T ss_dssp TCHHHHH-HHHT--EEEEEE---CCCHHHHHHHHHCTC--SEEE--TT-S-HHHHHHHHHHHHHC--T-EE
T ss_pred HHHHHHH-HHCCCCEEEEEccCccchhhHHHHHHHHHcCCCEEEECcC-CcHHHHHHHHHHHHHc--CCEE
Confidence 3344445 66899998765 3333 34556667789999999 44 2333455555555443 6655
No 33
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.79 E-value=34 Score=27.72 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCcEEEE---eCCccch--HHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCC
Q 012429 86 LRLLQRNIEETFQILFFLF---QGEAEDN--IPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAH 157 (464)
Q Consensus 86 L~~L~~~L~~~~G~~L~v~---~G~~~~~--l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~ 157 (464)
...+++.+ ++.|..+.++ .|..... |+..++ +++.|++-.+... -..-..+++.++ .|+++....+.
T Consensus 12 ~~~~~~~~-~~~G~~~~~hg~~~~~~~~~~~l~~~i~--~aD~VIv~t~~vs--H~~~~~vk~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 12 ERRYKRIL-EKYGGKLIHHGRDGGDEKKASRLPSKIK--KADLVIVFTDYVS--HNAMWKVKKAAKKYGIPIIYSRSR 84 (97)
T ss_pred HHHHHHHH-HHcCCEEEEEecCCCCccchhHHHHhcC--CCCEEEEEeCCcC--hHHHHHHHHHHHHcCCcEEEECCC
Confidence 46788888 9999999988 3333333 676666 5666666333322 222357777775 68998877543
No 34
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=63.17 E-value=84 Score=26.52 Aligned_cols=79 Identities=16% Similarity=0.046 Sum_probs=52.0
Q ss_pred HHHHHHhhhCCCCEEEEEEecCCccccch--------------hhHHHHHHHHHHHHHHHHhhcCCc---EEEEeCCc-c
Q 012429 48 IHAVDQANKNNVPVAVAFNLFDQFLGAKA--------------RQLGFMLRGLRLLQRNIEETFQIL---FFLFQGEA-E 109 (464)
Q Consensus 48 ~~A~~~a~~~~~~vl~vfi~dp~~~~~~~--------------~r~~Fl~esL~~L~~~L~~~~G~~---L~v~~G~~-~ 109 (464)
..|...+...+.++..+++.++....... .-..-..+.+..+++.+ ++.|+. ..+..|+| .
T Consensus 24 ~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~ 102 (154)
T COG0589 24 EEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA-EAAGVPVVETEVVEGSPSA 102 (154)
T ss_pred HHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH-HHcCCCeeEEEEecCCCcH
Confidence 33444444456677777887765321100 01233466777788888 777865 46677999 5
Q ss_pred chHHHHHHHhCccEEEEc
Q 012429 110 DNIPNFVRECGASLLVTD 127 (464)
Q Consensus 110 ~~l~~l~~~~~~~~V~~~ 127 (464)
+.+...+.+.+++.|+.-
T Consensus 103 ~~i~~~a~~~~adliV~G 120 (154)
T COG0589 103 EEILELAEEEDADLIVVG 120 (154)
T ss_pred HHHHHHHHHhCCCEEEEC
Confidence 889999999999999983
No 35
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=61.97 E-value=66 Score=30.42 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=35.2
Q ss_pred hCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCC-----ccchH----HHHHHHhCccEEEE
Q 012429 56 KNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE-----AEDNI----PNFVRECGASLLVT 126 (464)
Q Consensus 56 ~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~-----~~~~l----~~l~~~~~~~~V~~ 126 (464)
+.|..|++++.+.+.... +..+-...+..++... +.+|++++++.-+ ..+.+ .++.++ +++.|++
T Consensus 19 ~~G~~v~~l~~~~~~~~~----~~~~~~~~~~~~~~~A-~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~-g~~~vv~ 92 (218)
T TIGR03679 19 EEGHEVRCLITVVPENEE----SYMFHTPNIELTRLQA-EALGIPLVKIETSGEKEKEVEDLKGALKELKRE-GVEGIVT 92 (218)
T ss_pred HcCCEEEEEEEeccCCCC----ccccCCCCHHHHHHHH-HHhCCCEEEEECCCCChHHHHHHHHHHHHHHHc-CCCEEEE
Confidence 366677666555553210 0101112445566666 7789999887633 11223 333333 8999998
No 36
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=53.42 E-value=27 Score=31.91 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccE--EEEcC--CcCh
Q 012429 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL--LVTDF--SPLR 132 (464)
Q Consensus 83 ~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~--V~~~~--~p~~ 132 (464)
...+.++=++| ++.|+++.++.|+.......++++.++.. |+... .|..
T Consensus 129 ~~~~~~~l~~L-~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~ 181 (215)
T PF00702_consen 129 RPGAKEALQEL-KEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEP 181 (215)
T ss_dssp HTTHHHHHHHH-HHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHH
T ss_pred hhhhhhhhhhh-hccCcceeeeeccccccccccccccccccccccccccccccc
Confidence 34577778889 99999999999999999999999999965 55555 5643
No 37
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=53.09 E-value=29 Score=38.89 Aligned_cols=65 Identities=9% Similarity=0.195 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEe
Q 012429 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEV 154 (464)
Q Consensus 85 sL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~ 154 (464)
.-.+.=++| +++|++++++.||....-..++++.||++++.+--|... .+.|++.-+.|-.+-.+
T Consensus 541 ~a~~aI~~L-~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~AellPedK----~~~V~~l~~~g~~VamV 605 (713)
T COG2217 541 DAKEAIAAL-KALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELLPEDK----AEIVRELQAEGRKVAMV 605 (713)
T ss_pred hHHHHHHHH-HHCCCeEEEEcCCCHHHHHHHHHHcChHhheccCCcHHH----HHHHHHHHhcCCEEEEE
Confidence 344555678 999999999999999999999999999999999877642 23444432355455444
No 38
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=52.36 E-value=80 Score=29.00 Aligned_cols=95 Identities=8% Similarity=0.014 Sum_probs=61.4
Q ss_pred CEEEEEEecCCcc-ccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCC--------c-----------cchHHH-HHHH
Q 012429 60 PVAVAFNLFDQFL-GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE--------A-----------EDNIPN-FVRE 118 (464)
Q Consensus 60 ~vl~vfi~dp~~~-~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~--------~-----------~~~l~~-l~~~ 118 (464)
..+-||+...+.- -.-.-|...+.++.+||..=. ---|++.+|-... . ..++.+ ++..
T Consensus 27 d~l~vFVV~eD~S~Fpf~~R~~LVk~G~~~L~NV~-V~~~g~YiIS~aTFPsYFlK~~~~~~~~~~~lD~~iF~~~IAp~ 105 (182)
T PF08218_consen 27 DWLHVFVVSEDRSLFPFADRYELVKEGTADLPNVT-VHPGGDYIISSATFPSYFLKDEDDVIKAQAELDATIFKKYIAPA 105 (182)
T ss_pred CEEEEEEEccccCcCCHHHHHHHHHHHhCcCCCEE-EEcCCCeeeecccChhhhccchhHHHHHHHHHHHHHHHHHhhHh
Confidence 5666888876632 233567889999999986644 4445555553311 1 113333 5667
Q ss_pred hCccEEEEcCCcChH-HHHHHHHHHHHhc-CCCeEEEee
Q 012429 119 CGASLLVTDFSPLRE-IRRCKDKICNRVS-DSVTIHEVD 155 (464)
Q Consensus 119 ~~~~~V~~~~~p~~~-~~~rd~~v~~~l~-~~v~~~~~~ 155 (464)
.+|+.-|+-.||... ...--+.+++.|+ .||++++++
T Consensus 106 L~It~RfVG~EP~~~vT~~YN~~M~~~Lp~~gi~v~ei~ 144 (182)
T PF08218_consen 106 LGITKRFVGEEPFSPVTRIYNEAMKEILPPYGIEVVEIP 144 (182)
T ss_pred cCcccceeCCCCCCHHHHHHHHHHHHhccccCCEEEEEe
Confidence 899999997777443 3444567778886 789998763
No 39
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=49.75 E-value=61 Score=36.18 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcCh
Q 012429 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (464)
Q Consensus 83 ~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~ 132 (464)
.....+.=++| ++.|+++.++.||.......++++.|++.++....|..
T Consensus 448 Rp~a~eaI~~l-~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~~Ped 496 (675)
T TIGR01497 448 KGGIKERFAQL-RKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEATPED 496 (675)
T ss_pred hhHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCCCHHH
Confidence 34667777888 99999999999999999999999999999998877754
No 40
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=48.98 E-value=89 Score=30.11 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=49.1
Q ss_pred HHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCC--------ccchHHHHHHHhC
Q 012429 49 HAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE--------AEDNIPNFVRECG 120 (464)
Q Consensus 49 ~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~--------~~~~l~~l~~~~~ 120 (464)
.+++.|...|.+.+.+....+.........+..+.++|+.|.+.. ++.|+.|.+.... ..+.+.++++..+
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~~~~ 172 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYA-ENIGMDLILEPLTPYESNVVCNANDVLHALALVP 172 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHcCCEEEEecCCCCcccccCCHHHHHHHHHHcC
Confidence 344566778888775544333222334556789999999999999 9999999877521 1345566777665
Q ss_pred ccEE
Q 012429 121 ASLL 124 (464)
Q Consensus 121 ~~~V 124 (464)
-..|
T Consensus 173 ~~~v 176 (275)
T PRK09856 173 SPRL 176 (275)
T ss_pred CCcc
Confidence 4333
No 41
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=47.78 E-value=12 Score=33.56 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=58.2
Q ss_pred HHHHHHHhhhCCCCEEEEEEecCCccc-cchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe--------CCccchHHHHHH
Q 012429 47 LIHAVDQANKNNVPVAVAFNLFDQFLG-AKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--------GEAEDNIPNFVR 117 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~-~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--------G~~~~~l~~l~~ 117 (464)
+..|++.|.+.+.+ ..|+.|+|.-.. ..+......+-++.+=.+.| +++|+..++.. -++.+-+..++.
T Consensus 25 i~~~~~~a~~~~~~-~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l-~~~Gvd~~~~~~F~~~~~~ls~~~Fi~~iL~ 102 (157)
T PF06574_consen 25 IKKAVEIAKEKGLK-SVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELL-ESLGVDYVIVIPFTEEFANLSPEDFIEKILK 102 (157)
T ss_dssp HHHHHHHHHHCT-E-EEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHH-HHTTESEEEEE-CCCHHCCS-HHHHHHHHCC
T ss_pred HHHHhhhhhhcccc-eEEEEcccCHHHHhcCCCcccCCCCHHHHHHHH-HHcCCCEEEEecchHHHHcCCHHHHHHHHHH
Confidence 34455666666543 346777764210 11122234477888888889 99999876653 234556666444
Q ss_pred -HhCccEEEEcCC--cChHHHHHHHHHHHHhc-CCCeEEEeeC
Q 012429 118 -ECGASLLVTDFS--PLREIRRCKDKICNRVS-DSVTIHEVDA 156 (464)
Q Consensus 118 -~~~~~~V~~~~~--p~~~~~~rd~~v~~~l~-~~v~~~~~~~ 156 (464)
..++..|++-++ .......=.+.+++.++ .|+.+..++.
T Consensus 103 ~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~ 145 (157)
T PF06574_consen 103 EKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPP 145 (157)
T ss_dssp CHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE--
T ss_pred hcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECC
Confidence 889999999432 22110011245555554 6788877653
No 42
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=45.05 E-value=96 Score=27.98 Aligned_cols=82 Identities=16% Similarity=0.067 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhhCCCCEEEEEEe--cCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC-----Ccc---chHHH
Q 012429 45 WALIHAVDQANKNNVPVAVAFNL--FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG-----EAE---DNIPN 114 (464)
Q Consensus 45 ~aL~~A~~~a~~~~~~vl~vfi~--dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G-----~~~---~~l~~ 114 (464)
.-+..+++.|.+.|.+.+.+... ...........+..+.++|+.+.+.+ ++.|+.+.+... ... +.+.+
T Consensus 71 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gv~i~lE~~~~~~~~~~~~~~~~~~ 149 (213)
T PF01261_consen 71 EYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIA-EEYGVRIALENHPGPFSETPFSVEEIYR 149 (213)
T ss_dssp HHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHH-HHHTSEEEEE-SSSSSSSEESSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhh-hhhcceEEEecccCccccchhhHHHHHH
Confidence 35566677777888887766644 22212234567889999999999999 999999887652 122 67788
Q ss_pred HHHHhCccEEEEc
Q 012429 115 FVRECGASLLVTD 127 (464)
Q Consensus 115 l~~~~~~~~V~~~ 127 (464)
++++.+-..|.+.
T Consensus 150 ~l~~~~~~~~~i~ 162 (213)
T PF01261_consen 150 LLEEVDSPNVGIC 162 (213)
T ss_dssp HHHHHTTTTEEEE
T ss_pred HHhhcCCCcceEE
Confidence 9998887555543
No 43
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=42.50 E-value=1.1e+02 Score=27.17 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=40.4
Q ss_pred hcCCcEEEEeCCccchHHHHHHHh--CccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCc
Q 012429 96 TFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVW 163 (464)
Q Consensus 96 ~~G~~L~v~~G~~~~~l~~l~~~~--~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~ 163 (464)
++|+.+.+++.+.+..|-..+.+. +++.|+.|.--+. .-.-+++.++. -++++.+++-+.++..+
T Consensus 41 ~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~T---HtSiAl~DAl~~~~~P~VEVHiSNi~aRE 108 (146)
T PRK13015 41 ALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYT---HTSVAIRDALAALELPVIEVHISNVHARE 108 (146)
T ss_pred HcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHh---hhHHHHHHHHHcCCCCEEEEEcCCccccc
Confidence 348999999988776666655443 5678888732111 01124445454 58999999766665443
No 44
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=41.51 E-value=1.2e+02 Score=26.81 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=45.8
Q ss_pred HHHHHHHHHH---hhcCCcEEEEeCCccchHHHHHHHh--CccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCe
Q 012429 85 GLRLLQRNIE---ETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHN 158 (464)
Q Consensus 85 sL~~L~~~L~---~~~G~~L~v~~G~~~~~l~~l~~~~--~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~ 158 (464)
+|.++.+.|+ +++|+.+.+++.+.+..|-..+.+. +++.|+.+.--+. .-.-+++.++. -++++.+++-+.
T Consensus 25 tl~di~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~T---HtSiAl~DAl~~~~~P~vEVHiSN 101 (141)
T TIGR01088 25 TLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALT---HTSVALRDALAAVSLPVVEVHLSN 101 (141)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHh---hhHHHHHHHHHcCCCCEEEEEcCC
Confidence 4445554440 3348999999988877766665543 4678888732111 01124455554 589999998666
Q ss_pred eEeCc
Q 012429 159 VVPVW 163 (464)
Q Consensus 159 l~~~~ 163 (464)
++..+
T Consensus 102 i~aRE 106 (141)
T TIGR01088 102 VHARE 106 (141)
T ss_pred ccccc
Confidence 65543
No 45
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=41.06 E-value=50 Score=30.12 Aligned_cols=45 Identities=13% Similarity=0.012 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEc
Q 012429 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 82 l~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~ 127 (464)
+...+.++-+.+ ++.|.++.|..+.+...+..+++..+++.++..
T Consensus 88 ~~~~~~~~l~~l-~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~ 132 (202)
T TIGR01490 88 LYPEARDLIRWH-KAEGHTIVLVSASLTILVKPLARILGIDNAIGT 132 (202)
T ss_pred ccHHHHHHHHHH-HHCCCEEEEEeCCcHHHHHHHHHHcCCcceEec
Confidence 455677777778 888999999988888888888888888877654
No 46
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=39.70 E-value=78 Score=36.16 Aligned_cols=65 Identities=12% Similarity=0.244 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEeeC
Q 012429 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDA 156 (464)
Q Consensus 87 ~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~~ 156 (464)
..--..| +++|++++++.||....-...+++.|++.|+++--|... .+.|++.-+.+-.+-.+.|
T Consensus 729 ~~av~~L-k~~Gi~v~mLTGDn~~aA~svA~~VGi~~V~aev~P~~K----~~~Ik~lq~~~~~VaMVGD 793 (951)
T KOG0207|consen 729 ALAVAEL-KSMGIKVVMLTGDNDAAARSVAQQVGIDNVYAEVLPEQK----AEKIKEIQKNGGPVAMVGD 793 (951)
T ss_pred HHHHHHH-HhcCceEEEEcCCCHHHHHHHHHhhCcceEEeccCchhh----HHHHHHHHhcCCcEEEEeC
Confidence 3344567 899999999999999999999999999999999877642 2345443334444555533
No 47
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=39.16 E-value=1.4e+02 Score=27.63 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCCcEEEEeCCccc----------------------hHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHH
Q 012429 87 RLLQRNIEETFQILFFLFQGEAED----------------------NIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144 (464)
Q Consensus 87 ~~L~~~L~~~~G~~L~v~~G~~~~----------------------~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~ 144 (464)
..|.+.| .+.|..++++.||... .+.+|..+.|.-.|+.-.+|++.+| +.+++.
T Consensus 41 ~ale~~L-~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviva~ISP~r~~R---~~aR~~ 116 (197)
T COG0529 41 NALEEKL-FAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIVAFISPYREDR---QMAREL 116 (197)
T ss_pred HHHHHHH-HHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEEEeeCccHHHH---HHHHHH
Confidence 3567888 8899999998876421 2233444556655666677886544 455665
Q ss_pred hcCC
Q 012429 145 VSDS 148 (464)
Q Consensus 145 l~~~ 148 (464)
+..|
T Consensus 117 ~~~~ 120 (197)
T COG0529 117 LGEG 120 (197)
T ss_pred hCcC
Confidence 6544
No 48
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=38.95 E-value=84 Score=34.01 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhhcCC-cEEEEeCCccchHHHHHHHhCccEEEEcCCcC
Q 012429 81 FMLRGLRLLQRNIEETFQI-LFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131 (464)
Q Consensus 81 Fl~esL~~L~~~L~~~~G~-~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~ 131 (464)
=+..+..++=++| ++.|+ ++.+..|++......++++.+++.++.+..|.
T Consensus 362 ~l~~~~~e~i~~L-~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~p~ 412 (536)
T TIGR01512 362 EPRPDAAEAIAEL-KALGIEKVVMLTGDRRAVAERVARELGIDEVHAELLPE 412 (536)
T ss_pred cchHHHHHHHHHH-HHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccCcH
Confidence 3567888888999 99999 99999999999999999999999988765554
No 49
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=38.49 E-value=1.3e+02 Score=32.70 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhcC-CcEEEEeCCccchHHHHHHHhCccEEEEcCCc
Q 012429 82 MLRGLRLLQRNIEETFQ-ILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (464)
Q Consensus 82 l~esL~~L~~~L~~~~G-~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p 130 (464)
+..+..++=+.| ++.| +++.+..|++......++++.+++.++....|
T Consensus 385 ~~~g~~e~l~~L-~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~~p 433 (556)
T TIGR01525 385 LRPEAKEAIAAL-KRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAELLP 433 (556)
T ss_pred chHhHHHHHHHH-HHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccCCH
Confidence 667888888889 9999 99999999999999999999999998886544
No 50
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=38.40 E-value=85 Score=35.11 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcCh
Q 012429 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (464)
Q Consensus 84 esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~ 132 (464)
+...+.=++| ++.|++.++..||....-..++++.|++.++....|..
T Consensus 448 ~~~~eai~~L-r~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~Ped 495 (679)
T PRK01122 448 PGIKERFAEL-RKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPED 495 (679)
T ss_pred hhHHHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHH
Confidence 3566667788 99999999999999999999999999999998877754
No 51
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=38.05 E-value=84 Score=32.86 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeC--CccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEee
Q 012429 82 MLRGLRLLQRNIEETFQILFFLFQG--EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVD 155 (464)
Q Consensus 82 l~esL~~L~~~L~~~~G~~L~v~~G--~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~ 155 (464)
|=+=|..+.+++ .++|+.+++... +..+.+.+++.+.+.+.|+-..+-...|. .+.+.|+ .|+++.+.|
T Consensus 63 Ld~~l~~~~~~v-~~~Gg~vy~A~~aedA~~ii~~iv~~k~~k~vVKsKSmvseEI----gln~~Le~~G~ev~ETD 134 (459)
T COG1139 63 LDEYLEQLEENV-TRNGGHVYFAKDAEDAREIIGEIVGEKNGKKVVKSKSMVSEEI----GLNHYLEEKGIEVWETD 134 (459)
T ss_pred HHHHHHHHHHHH-HHcCCEEEEeCCHHHHHHHHHHHHhhccCcEEEEecchhHHHh----hhHHHHHHcCCeEEEcc
Confidence 334456677788 889999999873 46678999999999999998755444333 4455554 688887764
No 52
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=37.65 E-value=1.3e+02 Score=27.43 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHH
Q 012429 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144 (464)
Q Consensus 86 L~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~ 144 (464)
+++.-.++ ++.|+.++|...+.+..+..+++..++.-|+-..-|.. +..++++++.
T Consensus 51 ~~~W~~e~-k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~--~~fr~Al~~m 106 (175)
T COG2179 51 LRAWLAEL-KEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFG--RAFRRALKEM 106 (175)
T ss_pred HHHHHHHH-HhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccH--HHHHHHHHHc
Confidence 44445678 99999999999988889999999999999998877876 4555666654
No 53
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=37.21 E-value=94 Score=34.74 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcCh
Q 012429 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (464)
Q Consensus 84 esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~ 132 (464)
+...+.=++| ++.|++.++..||....-..++++.|++.++....|..
T Consensus 444 ~~a~e~I~~L-r~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~Ped 491 (673)
T PRK14010 444 DGLVERFREL-REMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPED 491 (673)
T ss_pred HHHHHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHH
Confidence 3566677788 99999999999999999999999999999998877754
No 54
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=37.11 E-value=1.2e+02 Score=30.30 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhhCCCCEEEEEEecCCccc-cchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe--------CCccchHHHH
Q 012429 45 WALIHAVDQANKNNVPVAVAFNLFDQFLG-AKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--------GEAEDNIPNF 115 (464)
Q Consensus 45 ~aL~~A~~~a~~~~~~vl~vfi~dp~~~~-~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--------G~~~~~l~~l 115 (464)
.-|..|.+.|.+.+.|++ |..|+|.-.. ..+.+.-..+-.+++=-+.| +.+|+..++.. -++.+-+..+
T Consensus 33 ~ll~~a~~~a~~~~~~~~-VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l-~~~gvd~~~v~~F~~~fa~ls~~~Fv~~l 110 (304)
T COG0196 33 KLLAQALEAAEKRGLPVV-VITFEPHPRELLKPDKPPTRLTPLREKIRLL-AGYGVDALVVLDFDLEFANLSAEEFVELL 110 (304)
T ss_pred HHHHHHHHHHHHhCCceE-EEEecCCCHHHcCCCCCccccCCHHHHHHHH-HhcCCcEEEEEeCCHhHhhCCHHHHHHHH
Confidence 345666777777777766 7777774211 11111234444566666678 99998776654 2344555667
Q ss_pred HHHhCccEEEE--cCCcChHHHHH-HHHHHHHhcCCCeEEEeeC
Q 012429 116 VRECGASLLVT--DFSPLREIRRC-KDKICNRVSDSVTIHEVDA 156 (464)
Q Consensus 116 ~~~~~~~~V~~--~~~p~~~~~~r-d~~v~~~l~~~v~~~~~~~ 156 (464)
++..++..|++ |...... +.- .+.++..++.|+.+..++.
T Consensus 111 v~~l~~k~ivvG~DF~FGk~-~~g~~~~L~~~~~~gf~v~~v~~ 153 (304)
T COG0196 111 VEKLNVKHIVVGFDFRFGKG-RQGNAELLRELGQKGFEVTIVPK 153 (304)
T ss_pred HhccCCcEEEEecccccCCC-CCCCHHHHHHhccCCceEEEecc
Confidence 88889999988 3332211 111 1233343433777776643
No 55
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.00 E-value=1.7e+02 Score=28.05 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEeeCC
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAH 157 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~~~ 157 (464)
-|..+-+..+.+.+ ++.|..+.+...+......+.+...+++.|+..-.+.. +..+.+....|+++..++..
T Consensus 17 ~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~-----~~~~~~~~~~~ipvV~~~~~ 88 (283)
T cd06279 17 PVASQFLAGVAEVL-DAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGVPRD-----DPLVAALLRRGLPVVVVDQP 88 (283)
T ss_pred ccHHHHHHHHHHHH-HHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCCCCC-----hHHHHHHHHcCCCEEEEecC
Confidence 46677777778888 88899988877544223333445678888887532211 12233322358888888653
No 56
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=36.76 E-value=1.6e+02 Score=25.87 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=41.6
Q ss_pred hcCCcEEEEeCCccchHHHHHHHh--CccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCc
Q 012429 96 TFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVW 163 (464)
Q Consensus 96 ~~G~~L~v~~G~~~~~l~~l~~~~--~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~ 163 (464)
++|+.+.+++.+.+..|-+.+.+. +++.|+.|.--+. .-.-+++.++. -++++.+++-+.++..+
T Consensus 39 ~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~T---HtSvAi~DAl~~~~~P~VEVHiSNi~aRE 106 (140)
T cd00466 39 ELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYT---HTSIALRDALAAVSIPVIEVHISNIHARE 106 (140)
T ss_pred HcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHH---HHHHHHHHHHHcCCCCEEEEecCCccccc
Confidence 459999999988776666655443 5788888742111 11135555554 57999999877666543
No 57
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.31 E-value=2.3e+02 Score=27.27 Aligned_cols=81 Identities=9% Similarity=0.014 Sum_probs=51.2
Q ss_pred HHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC-----CccchHHHHHHHhCc
Q 012429 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG-----EAEDNIPNFVRECGA 121 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G-----~~~~~l~~l~~~~~~ 121 (464)
+..+++.|.+.|.+++.+...+..........+..+.++|+.+.+.. ++.|+.|.+..- +..+.+..|++..+-
T Consensus 96 ~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gv~l~lE~~~~~~~~~~~~~~~l~~~v~~ 174 (284)
T PRK13210 96 MKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQA-AAAQVMLAVEIMDTPFMNSISKWKKWDKEIDS 174 (284)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHH-HHhCCEEEEEecCccccCCHHHHHHHHHHcCC
Confidence 45666667778888875532221111223455678889999999999 999999988542 122345667777655
Q ss_pred cEEEEcC
Q 012429 122 SLLVTDF 128 (464)
Q Consensus 122 ~~V~~~~ 128 (464)
..|-...
T Consensus 175 ~~~~~~~ 181 (284)
T PRK13210 175 PWLTVYP 181 (284)
T ss_pred CceeEEe
Confidence 5554433
No 58
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=35.81 E-value=2.5e+02 Score=26.62 Aligned_cols=83 Identities=8% Similarity=0.084 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhCCCCEEEEEEe-cCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC----------CccchHHH
Q 012429 46 ALIHAVDQANKNNVPVAVAFNL-FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG----------EAEDNIPN 114 (464)
Q Consensus 46 aL~~A~~~a~~~~~~vl~vfi~-dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G----------~~~~~l~~ 114 (464)
.+..+++.|.+.|.++|.+..- .|.. .....-+..+.++|+++.+-. ++.|+.+.+-.. +..+.+.+
T Consensus 85 ~~~~~i~~a~~lg~~~i~~~~g~~~~~-~~~~~~~~~~~~~l~~l~~~A-~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~ 162 (254)
T TIGR03234 85 GVALAIAYARALGCPQVNCLAGKRPAG-VSPEEARATLVENLRYAADAL-DRIGLTLLIEPINSFDMPGFFLTTTEQALA 162 (254)
T ss_pred HHHHHHHHHHHhCCCEEEECcCCCCCC-CCHHHHHHHHHHHHHHHHHHH-HhcCCEEEEEECCcccCCCChhcCHHHHHH
Confidence 4556666777788776644321 2211 112333456789999999888 999999988642 23455567
Q ss_pred HHHHhCccEEEEcCCc
Q 012429 115 FVRECGASLLVTDFSP 130 (464)
Q Consensus 115 l~~~~~~~~V~~~~~p 130 (464)
++++.+-..|-+..++
T Consensus 163 li~~v~~~~~~i~~D~ 178 (254)
T TIGR03234 163 VIDDVGRENLKLQYDL 178 (254)
T ss_pred HHHHhCCCCEeEeeeh
Confidence 8887766666554433
No 59
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=35.58 E-value=86 Score=27.46 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=26.6
Q ss_pred cchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEe
Q 012429 109 EDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEV 154 (464)
Q Consensus 109 ~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~ 154 (464)
.+.+.+++++++++.|+....... .+..+++-+.|+ .||+++.+
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~--~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSE--EEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS---HHHHHHHHHHHHTTT-EEEE-
T ss_pred HHHHHHHHHhCCCCEEEEEcCccC--HHHHHHHHHHHHhCCCEEEEe
Confidence 467888999999999999763332 334566666675 78888765
No 60
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=34.44 E-value=39 Score=29.93 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEE
Q 012429 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126 (464)
Q Consensus 84 esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~ 126 (464)
.++.++-+.| ++.|.++.|..+.....+..+++.+++..++.
T Consensus 76 ~g~~~~l~~l-~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~ 117 (177)
T TIGR01488 76 PGARELISWL-KERGIDTVIVSGGFDFFVEPVAEKLGIDDVFA 117 (177)
T ss_pred cCHHHHHHHH-HHCCCEEEEECCCcHHHHHHHHHHcCCchhee
Confidence 4555666666 66677777777666666666666666655544
No 61
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=34.40 E-value=56 Score=29.58 Aligned_cols=40 Identities=8% Similarity=-0.053 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEE
Q 012429 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV 125 (464)
Q Consensus 85 sL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~ 125 (464)
++.++=+.| ++.|+++.|+.+.....+..+++..++..++
T Consensus 84 g~~e~l~~l-~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~ 123 (201)
T TIGR01491 84 YAEELVRWL-KEKGLKTAIVSGGIMCLAKKVAEKLNPDYVY 123 (201)
T ss_pred cHHHHHHHH-HHCCCEEEEEeCCcHHHHHHHHHHhCCCeEE
Confidence 444555555 5556666655555555555555555554443
No 62
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=32.51 E-value=44 Score=31.44 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEc
Q 012429 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 84 esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~ 127 (464)
....+|-+.| ++.|..+.|+.|.+......+++..+++.++.+
T Consensus 80 ~ga~elv~~l-k~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an 122 (212)
T COG0560 80 PGAEELVAAL-KAAGAKVVIISGGFTFLVEPIAERLGIDYVVAN 122 (212)
T ss_pred ccHHHHHHHH-HHCCCEEEEEcCChHHHHHHHHHHhCCchheee
Confidence 3477888888 899999999999888888888888888877764
No 63
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=32.00 E-value=1.6e+02 Score=28.41 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=51.6
Q ss_pred EEEEecCCccccchhhHHHHHHHHHHHHHHHHh-hcCCcEEEEeCCccc--hHHHHHHHhCccEEE
Q 012429 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEE-TFQILFFLFQGEAED--NIPNFVRECGASLLV 125 (464)
Q Consensus 63 ~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~-~~G~~L~v~~G~~~~--~l~~l~~~~~~~~V~ 125 (464)
.+|+.|....+.|.+-...+.+-+.+.-+.| . +.|..++++-.+... .+.+|.+..++.-|.
T Consensus 26 ~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L-~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iPii~ 90 (251)
T TIGR00067 26 YIYVGDTKRFPYGEKSPEFILEYVLELLTFL-KERHNIKLLVVACNTASALALEDLQRNFDFPVVG 90 (251)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHHHH-HHhCCCCEEEEeCchHHHHHHHHHHHHCCCCEEe
Confidence 4899999888889998999999999999999 8 999999999988765 367777766665443
No 64
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.87 E-value=2.8e+02 Score=25.97 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCCccc----hHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEee
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAED----NIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVD 155 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~----~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~ 155 (464)
.|..+-+..+++.+ ++.|..+.+...+..+ .+.+.+.+.+++.|+....... ..+.+..+.|+++..++
T Consensus 15 ~~~~~~~~~i~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~------~~~~~l~~~~ipvV~~~ 87 (268)
T cd06277 15 AFYSEIYRAIEEEA-KKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIST------EYIKEIKELGIPFVLVD 87 (268)
T ss_pred CcHHHHHHHHHHHH-HHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCCh------HHHHHHhhcCCCEEEEc
Confidence 36677777889999 9999998877643222 1222334568999988542211 12333334689998886
Q ss_pred CC
Q 012429 156 AH 157 (464)
Q Consensus 156 ~~ 157 (464)
..
T Consensus 88 ~~ 89 (268)
T cd06277 88 HY 89 (268)
T ss_pred cC
Confidence 43
No 65
>PRK10671 copA copper exporting ATPase; Provisional
Probab=29.83 E-value=1.8e+02 Score=33.43 Aligned_cols=45 Identities=9% Similarity=0.175 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcC
Q 012429 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131 (464)
Q Consensus 86 L~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~ 131 (464)
..+.-++| ++.|+++.+..|+.......++++.+++.++....|.
T Consensus 655 a~~~i~~L-~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~~~p~ 699 (834)
T PRK10671 655 SVAALQRL-HKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPD 699 (834)
T ss_pred HHHHHHHH-HHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeCCCHH
Confidence 44455788 8899999999999999999999999999998876554
No 66
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=29.74 E-value=3.3e+02 Score=26.25 Aligned_cols=80 Identities=6% Similarity=-0.073 Sum_probs=48.8
Q ss_pred HHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe--CC---ccchHHHHHHHhCc
Q 012429 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--GE---AEDNIPNFVRECGA 121 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--G~---~~~~l~~l~~~~~~ 121 (464)
+..+++.|...|.+++.+.-.+...-......+..+.++|+.+.+-. ++.|+.|.+.. ++ ......++++..+-
T Consensus 96 ~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A-~~~Gv~l~lE~~~~~~~~t~~~~~~li~~v~~ 174 (279)
T TIGR00542 96 MEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELA-ARAQVTLAVEIMDTPFMSSISKWLKWDHYLNS 174 (279)
T ss_pred HHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHH-HHcCCEEEEeeCCCchhcCHHHHHHHHHHcCC
Confidence 44555667778888775432211111122445778889999999999 99999998763 11 12233456666655
Q ss_pred cEEEEc
Q 012429 122 SLLVTD 127 (464)
Q Consensus 122 ~~V~~~ 127 (464)
..|-..
T Consensus 175 ~~v~~~ 180 (279)
T TIGR00542 175 PWFTLY 180 (279)
T ss_pred CceEEE
Confidence 555443
No 67
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=29.11 E-value=3.7e+02 Score=23.65 Aligned_cols=59 Identities=12% Similarity=-0.008 Sum_probs=41.0
Q ss_pred CCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCc-EEEEeCCccchHHHHHHHhCc
Q 012429 58 NVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQIL-FFLFQGEAEDNIPNFVRECGA 121 (464)
Q Consensus 58 ~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~-L~v~~G~~~~~l~~l~~~~~~ 121 (464)
+.+++.+|. .-..-......+ +.++.+..+++ +++|.. ++.+..++.....+++++.++
T Consensus 29 gk~vvl~fy-P~~~tp~Ct~e~---~~~~~~~~~~f-~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGV-PGAFTPTCSAQH---LPGYVENADEL-KAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEe-CCCCCCCCchhH---HHHHHHhHHHH-HHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 456664444 332223223321 55788888999 999994 888998888889999999887
No 68
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=28.98 E-value=94 Score=25.68 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCcEEEEe-CCccchHHHHHHH--hCccEEEEcC
Q 012429 86 LRLLQRNIEETFQILFFLFQ-GEAEDNIPNFVRE--CGASLLVTDF 128 (464)
Q Consensus 86 L~~L~~~L~~~~G~~L~v~~-G~~~~~l~~l~~~--~~~~~V~~~~ 128 (464)
|.....+| ++.|++|+++- |++.. +.++++. +... ||+|.
T Consensus 2 L~~~~~~l-~~~gv~lv~I~~g~~~~-~~~f~~~~~~p~~-ly~D~ 44 (115)
T PF13911_consen 2 LSRRKPEL-EAAGVKLVVIGCGSPEG-IEKFCELTGFPFP-LYVDP 44 (115)
T ss_pred hhHhHHHH-HHcCCeEEEEEcCCHHH-HHHHHhccCCCCc-EEEeC
Confidence 66778899 99999998876 55544 8888854 4555 77775
No 69
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=28.89 E-value=1e+02 Score=27.46 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccE--EEEc
Q 012429 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL--LVTD 127 (464)
Q Consensus 88 ~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~--V~~~ 127 (464)
++=+.+ ++.|.+++|+.|.+...+..+++..++.. |+++
T Consensus 96 e~i~~~-~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~ 136 (192)
T PF12710_consen 96 ELIREL-KDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGN 136 (192)
T ss_dssp HHHHHH-HHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEE
T ss_pred HHHHHH-HHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEE
Confidence 666667 88899999999999888888998888887 6664
No 70
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=28.89 E-value=2.9e+02 Score=23.62 Aligned_cols=41 Identities=15% Similarity=0.328 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCcc----EEEE
Q 012429 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS----LLVT 126 (464)
Q Consensus 85 sL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~----~V~~ 126 (464)
++.++=++| ++.|+++.++.+.+.+.+..+++..++. .|++
T Consensus 81 ~~~~~L~~l-~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~ 125 (176)
T PF13419_consen 81 GVRELLERL-KAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIIS 125 (176)
T ss_dssp THHHHHHHH-HHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEE
T ss_pred hhhhhhhhc-ccccceeEEeecCCcccccccccccccccccccccc
Confidence 455666777 7778888888877777777777766544 6666
No 71
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=28.42 E-value=1.3e+02 Score=29.82 Aligned_cols=104 Identities=10% Similarity=-0.109 Sum_probs=56.2
Q ss_pred HHHHHHhhhCCCCEEEEEEecCCccc-cchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe--------CCccchHHHHHH-
Q 012429 48 IHAVDQANKNNVPVAVAFNLFDQFLG-AKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--------GEAEDNIPNFVR- 117 (464)
Q Consensus 48 ~~A~~~a~~~~~~vl~vfi~dp~~~~-~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--------G~~~~~l~~l~~- 117 (464)
..|.+.|.+.+.+. .|+.|+|.-.. ..+..... +.++++=.+-| +++|++.++.. -+|++-+.+++.
T Consensus 19 ~~~~~~a~~~~~~~-~V~tF~phP~~~~~~~~~~~-l~~~~~k~~~l-~~~Gvd~~~~~~F~~~~a~ls~e~Fi~~~l~~ 95 (288)
T TIGR00083 19 QELKQIAEEKGLPP-AVLLFEPHPSEQFNWLTAPA-LTPLEDKARQL-QIKGVEQLLVVVFDEEFANLSALQFIDQLIVK 95 (288)
T ss_pred HHHHHHHHHhCCCE-EEEEeCCChHHHhCccCCCC-CCCHHHHHHHH-HHcCCCEEEEeCCCHHHHcCCHHHHHHHHHHh
Confidence 34455555555443 36777774110 01111112 66778888888 99999876654 234555666654
Q ss_pred HhCccEEEEcCCc--ChHHHHHHHHHHHHhc-CCCeEEEe
Q 012429 118 ECGASLLVTDFSP--LREIRRCKDKICNRVS-DSVTIHEV 154 (464)
Q Consensus 118 ~~~~~~V~~~~~p--~~~~~~rd~~v~~~l~-~~v~~~~~ 154 (464)
..++..|++-++. ......-.+.+++.++ .|+.+...
T Consensus 96 ~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~ 135 (288)
T TIGR00083 96 HLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVK 135 (288)
T ss_pred ccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEe
Confidence 5899999994332 1110111245555554 46665443
No 72
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=28.06 E-value=3.3e+02 Score=25.59 Aligned_cols=71 Identities=8% Similarity=-0.062 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCCc--cchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEeeC
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGEA--EDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDA 156 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~~--~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~~ 156 (464)
.|..+-++.+.+.+ ++.|..+.+...+. .+.+.+.+...+++.|+..-.... +..+++..+.||++..++.
T Consensus 23 ~~~~~~~~gi~~~~-~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~-----~~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 23 PFFLSLLGGIADAL-AERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ-----DPLPERLAETGLPFVVWGR 95 (275)
T ss_pred chHHHHHHHHHHHH-HHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC-----hHHHHHHHhCCCCEEEECC
Confidence 35566666677888 88899988775332 334445555678898877422111 1223333346899988864
No 73
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=27.88 E-value=3.7e+02 Score=23.87 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=46.6
Q ss_pred HHHHHHHHHH---hhcCCcEEEEeCCccchHHHHHHHh--CccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCe
Q 012429 85 GLRLLQRNIE---ETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHN 158 (464)
Q Consensus 85 sL~~L~~~L~---~~~G~~L~v~~G~~~~~l~~l~~~~--~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~ 158 (464)
+|.++.+.|+ +++|+.+.+++.+.+..|-..+.+. +++.|+.|.--+. .-.-+++.++. -++++.+++-+.
T Consensus 27 tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~T---HtSiAl~DAl~~~~~P~VEVHiSN 103 (146)
T PRK05395 27 TLADIEALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYT---HTSVALRDALAAVSIPVIEVHLSN 103 (146)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHH---HHHHHHHHHHHcCCCCEEEEecCC
Confidence 4444444440 3458999999988776666655543 5788888742111 01134555554 589999998766
Q ss_pred eEeCc
Q 012429 159 VVPVW 163 (464)
Q Consensus 159 l~~~~ 163 (464)
++..+
T Consensus 104 i~aRE 108 (146)
T PRK05395 104 IHARE 108 (146)
T ss_pred ccccc
Confidence 66543
No 74
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=27.44 E-value=6.1e+02 Score=25.16 Aligned_cols=95 Identities=17% Similarity=0.286 Sum_probs=52.3
Q ss_pred HHHHHhhhCCCCEEEEEEecCCccccchhhHHHH--HHHHHHHHHHHHhhcCCcEEEEe--CCccchHHHHHHHhCccEE
Q 012429 49 HAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFM--LRGLRLLQRNIEETFQILFFLFQ--GEAEDNIPNFVRECGASLL 124 (464)
Q Consensus 49 ~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl--~esL~~L~~~L~~~~G~~L~v~~--G~~~~~l~~l~~~~~~~~V 124 (464)
+.++.|.+.+.||+.=+. + +. ..|+ ...+..+-..+-++.++|+.+.. |...+.+.+ +-+.+.+.|
T Consensus 33 AileaA~e~~sPvIiq~S--~-----g~--~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~-ai~~GFsSv 102 (286)
T COG0191 33 AILEAAEEEKSPVIIQFS--E-----GA--AKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQ-AIRAGFSSV 102 (286)
T ss_pred HHHHHHHHhCCCEEEEec--c-----cH--HHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH-HHhcCCceE
Confidence 334445556678763222 1 11 2233 35666665555355689988774 654444333 224589999
Q ss_pred EEcCC--cChHHHHHHHHHHHHhc-CCCeEEE
Q 012429 125 VTDFS--PLREIRRCKDKICNRVS-DSVTIHE 153 (464)
Q Consensus 125 ~~~~~--p~~~~~~rd~~v~~~l~-~~v~~~~ 153 (464)
-+|-+ |..+-....++|.+.+. .||.|+.
T Consensus 103 MiDgS~~~~eENi~~tkevv~~ah~~gvsVEa 134 (286)
T COG0191 103 MIDGSHLPFEENIAITKEVVEFAHAYGVSVEA 134 (286)
T ss_pred EecCCcCCHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 98743 43333445566767664 6776643
No 75
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.26 E-value=3e+02 Score=26.55 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhc-----CCcEEEEeCCccchHHHHHHHhCccEEEEc---CCcChHHHHHHHHHHHHhc-C
Q 012429 77 RQLGFMLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVTD---FSPLREIRRCKDKICNRVS-D 147 (464)
Q Consensus 77 ~r~~Fl~esL~~L~~~L~~~~-----G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~---~~p~~~~~~rd~~v~~~l~-~ 147 (464)
.+..-+.+.|.+|.+++ ++. +..+++.+ +.+..|++.+|+..+... .+|.. +...++.+.++ .
T Consensus 145 ~N~~~~~~~L~~l~~~~-~~~~~~~~~~~~v~~H----~af~Y~~~~ygl~~~~~~~~~~eps~---~~l~~l~~~ik~~ 216 (266)
T cd01018 145 ANLDALLAELDALDSEI-RTILSKLKQRAFMVYH----PAWGYFARDYGLTQIPIEEEGKEPSP---ADLKRLIDLAKEK 216 (266)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhcCCCCeEEEEC----chhHHHHHHcCCEEEecCCCCCCCCH---HHHHHHHHHHHHc
Confidence 34455566677777666 442 22334333 588999999999977652 23433 33456666665 6
Q ss_pred CCeEEEee
Q 012429 148 SVTIHEVD 155 (464)
Q Consensus 148 ~v~~~~~~ 155 (464)
+|++..++
T Consensus 217 ~v~~if~e 224 (266)
T cd01018 217 GVRVVFVQ 224 (266)
T ss_pred CCCEEEEc
Confidence 88876664
No 76
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=26.87 E-value=3.6e+02 Score=25.68 Aligned_cols=79 Identities=10% Similarity=0.041 Sum_probs=49.2
Q ss_pred HHHHHHHhhhCCCCEEEEEEec-CCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC----------CccchHHHH
Q 012429 47 LIHAVDQANKNNVPVAVAFNLF-DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG----------EAEDNIPNF 115 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~d-p~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G----------~~~~~l~~l 115 (464)
+..+++.|.+.|.+.|.++.-. +.-. .....+..+.++|..+.+.. ++.|+.|.+... +..+...++
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~~~~~~-~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~l 164 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGKTPAGF-SSEQIHATLVENLRYAANML-MKEDILLLIEPINHFDIPGFHLTGTRQALKL 164 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCCCC-CHHHHHHHHHHHHHHHHHHH-HHcCCEEEEEeCCCcCCCCCccCCHHHHHHH
Confidence 4556667777888876554321 1111 11233567789999999999 999999988631 123345567
Q ss_pred HHHhCccEEEEc
Q 012429 116 VRECGASLLVTD 127 (464)
Q Consensus 116 ~~~~~~~~V~~~ 127 (464)
+++.+-..|-..
T Consensus 165 l~~v~~~~v~l~ 176 (258)
T PRK09997 165 IDDVGCCNLKIQ 176 (258)
T ss_pred HHHhCCCCEEEE
Confidence 777665555443
No 77
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=26.66 E-value=85 Score=30.97 Aligned_cols=36 Identities=17% Similarity=0.409 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCc
Q 012429 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA 121 (464)
Q Consensus 85 sL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~ 121 (464)
+..+|=+.| ++.|+++.|+.|.....+..+++..++
T Consensus 125 G~~efl~~L-~~~GIpv~IvS~G~~~~Ie~vL~~lgl 160 (277)
T TIGR01544 125 GYENFFDKL-QQHSIPVFIFSAGIGNVLEEVLRQAGV 160 (277)
T ss_pred CHHHHHHHH-HHCCCcEEEEeCCcHHHHHHHHHHcCC
Confidence 445555556 666666666665555555555554443
No 78
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=26.61 E-value=69 Score=29.62 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEE
Q 012429 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124 (464)
Q Consensus 85 sL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V 124 (464)
++.++=+.| ++.|.++.+..+.....+..+++..++..+
T Consensus 89 g~~~~l~~l-~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~ 127 (219)
T TIGR00338 89 GAEELVKTL-KEKGYKVAVISGGFDLFAEHVKDKLGLDAA 127 (219)
T ss_pred CHHHHHHHH-HHCCCEEEEECCCcHHHHHHHHHHcCCCce
Confidence 344444444 444555555554444444444444444443
No 79
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=26.60 E-value=1.6e+02 Score=23.76 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCc----cEEEE
Q 012429 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA----SLLVT 126 (464)
Q Consensus 81 Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~----~~V~~ 126 (464)
-+.+++.++-+.| ++.|.+++++.+.+...+..+++..++ +.++.
T Consensus 24 ~~~~~~~~~l~~l-~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~ 72 (139)
T cd01427 24 ELYPGVKEALKEL-KEKGIKLALATNKSRREVLELLEELGLDDYFDPVIT 72 (139)
T ss_pred CcCcCHHHHHHHH-HHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheec
Confidence 4556777888888 888999999999888888888888776 45554
No 80
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=26.55 E-value=2.1e+02 Score=31.13 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCc
Q 012429 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (464)
Q Consensus 82 l~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p 130 (464)
+.....++=++| ++.|+++.+..|++......++++.+++ ++.+..|
T Consensus 406 l~~~a~e~i~~L-k~~Gi~v~ilSgd~~~~a~~ia~~lgi~-~~~~~~p 452 (562)
T TIGR01511 406 LRPEAKEVIQAL-KRRGIEPVMLTGDNRKTAKAVAKELGIN-VRAEVLP 452 (562)
T ss_pred ccHHHHHHHHHH-HHcCCeEEEEcCCCHHHHHHHHHHcCCc-EEccCCh
Confidence 445666777778 8999999999999999999999999997 5555444
No 81
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=25.89 E-value=1.2e+02 Score=32.06 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeC--CccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEe
Q 012429 82 MLRGLRLLQRNIEETFQILFFLFQG--EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEV 154 (464)
Q Consensus 82 l~esL~~L~~~L~~~~G~~L~v~~G--~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~ 154 (464)
+-+=|..+.+++ ++.|..+++... +..+.+.+++++.++..|+..-+....+. .+.+.|. .|+++..-
T Consensus 49 ld~~l~~~~~~~-~~~g~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~kS~~~eei----gl~~~L~~~g~~~~et 119 (432)
T TIGR00273 49 LDFYLDQLKENV-TQRGGHVYYAKTAEEARKIIGKVAQEKNGKKVVKSKSMVSEEI----GLNEVLEKIGIEVWET 119 (432)
T ss_pred HHHHHHHHHHHH-HHCCCEEEEECCHHHHHHHHHHHHHHhCCCEEEEcCchHHHHh----CCHHHHHhCCCeeeeC
Confidence 445566677888 888999998863 45677889999999999998755544332 3444453 57776554
No 82
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=25.29 E-value=4.1e+02 Score=24.72 Aligned_cols=71 Identities=10% Similarity=0.159 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEE-eC--Cccc---hHHHHHHHhCccEEEEc-CCcChHHHHHHHHHHHHhcCCCeEEE
Q 012429 81 FMLRGLRLLQRNIEETFQILFFLF-QG--EAED---NIPNFVRECGASLLVTD-FSPLREIRRCKDKICNRVSDSVTIHE 153 (464)
Q Consensus 81 Fl~esL~~L~~~L~~~~G~~L~v~-~G--~~~~---~l~~l~~~~~~~~V~~~-~~p~~~~~~rd~~v~~~l~~~v~~~~ 153 (464)
|..+-..-+++.+ +++|..+.+. .+ ++.. .+.+++ ..+++.|++. .++... ...+++..+.||++..
T Consensus 12 ~~~~~~~g~~~~a-~~~g~~~~~~~~~~~d~~~q~~~i~~~i-~~~~d~Iiv~~~~~~~~----~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 12 FWQQVIKGAKAAA-KELGYEVEIVFDAQNDPEEQIEQIEQAI-SQGVDGIIVSPVDPDSL----APFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHH-HHHTCEEEEEEESTTTHHHHHHHHHHHH-HTTESEEEEESSSTTTT----HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHH-HHcCCEEEEeCCCCCCHHHHHHHHHHHH-HhcCCEEEecCCCHHHH----HHHHHHHhhcCceEEE
Confidence 7777788888888 8889999885 42 3322 233333 3379999885 333221 1345554457999999
Q ss_pred eeCC
Q 012429 154 VDAH 157 (464)
Q Consensus 154 ~~~~ 157 (464)
++..
T Consensus 86 ~d~~ 89 (257)
T PF13407_consen 86 VDSD 89 (257)
T ss_dssp ESST
T ss_pred Eecc
Confidence 8776
No 83
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=25.11 E-value=1.6e+02 Score=29.43 Aligned_cols=107 Identities=16% Similarity=0.102 Sum_probs=57.7
Q ss_pred HHHHHHHhhhCCCCEEEEEEecCCccc-cchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC--------CccchHHH-HH
Q 012429 47 LIHAVDQANKNNVPVAVAFNLFDQFLG-AKARQLGFMLRGLRLLQRNIEETFQILFFLFQG--------EAEDNIPN-FV 116 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~-~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G--------~~~~~l~~-l~ 116 (464)
|..|.+.|.+.+.+.+ |+.|||.-.. ..+......+-++++=.+.| +++|++.++..- ++.+-+.+ |+
T Consensus 33 l~~a~~~a~~~~~~~~-vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l-~~~gVD~~~~~~F~~~~~~ls~e~Fi~~~l~ 110 (305)
T PRK05627 33 LARAREIARERGLPSV-VMTFEPHPREVFAPDKAPARLTPLRDKAELL-AELGVDYVLVLPFDEEFAKLSAEEFIEDLLV 110 (305)
T ss_pred HHHHHHHHHhcCCCEE-EEEecCCHHHHcCCCCCCcCCCCHHHHHHHH-HHcCCCEEEEecCCHHHhcCCHHHHHHHHHH
Confidence 3455555555554433 5667764110 00011123455777778888 999998776531 35555666 45
Q ss_pred HHhCccEEEEcCCcC-hHHHH-HHHHHHHHhc-CCCeEEEee
Q 012429 117 RECGASLLVTDFSPL-REIRR-CKDKICNRVS-DSVTIHEVD 155 (464)
Q Consensus 117 ~~~~~~~V~~~~~p~-~~~~~-rd~~v~~~l~-~~v~~~~~~ 155 (464)
+..+++.|++-.+.. ...+. -.+.+++.++ .|+.+..++
T Consensus 111 ~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~ 152 (305)
T PRK05627 111 KGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVP 152 (305)
T ss_pred hccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEec
Confidence 568999999943331 10011 0134555554 477766553
No 84
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=24.82 E-value=78 Score=29.63 Aligned_cols=9 Identities=0% Similarity=0.235 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 012429 137 CKDKICNRV 145 (464)
Q Consensus 137 rd~~v~~~l 145 (464)
...-|+..|
T Consensus 117 ~i~~Va~~L 125 (227)
T KOG1615|consen 117 LIEPVAEQL 125 (227)
T ss_pred HHHHHHHHh
Confidence 334444444
No 85
>TIGR03674 fen_arch flap structure-specific endonuclease. Endonuclease that cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA
Probab=24.68 E-value=1.9e+02 Score=29.30 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=10.9
Q ss_pred chHHHHHHHhccchhHH
Q 012429 232 SGEDAAMEVLKGSKDGF 248 (464)
Q Consensus 232 gGe~~A~~~L~~~~~~F 248 (464)
.|...|.+.+ +.|
T Consensus 244 IG~ktA~kli----~~~ 256 (338)
T TIGR03674 244 IGPKTALKLI----KEH 256 (338)
T ss_pred ccHHHHHHHH----HHc
Confidence 4999999999 765
No 86
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=24.42 E-value=3.8e+02 Score=25.49 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=30.7
Q ss_pred CCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC
Q 012429 59 VPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG 106 (464)
Q Consensus 59 ~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G 106 (464)
--+|.+|--.+..-.... ..|..+...+..+.| ++.|+++++--|
T Consensus 28 ~D~v~lf~~~~~~~~~~~--~~~~~~~~~~~i~~l-~~kG~KVl~sig 72 (255)
T cd06542 28 VDMVSLFAANINLDAATA--VQFLLTNKETYIRPL-QAKGTKVLLSIL 72 (255)
T ss_pred ceEEEEcccccCcccccc--hhhhhHHHHHHHHHH-hhCCCEEEEEEC
Confidence 346666654544211111 678888999999999 999999987553
No 87
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.15 E-value=2.9e+02 Score=25.82 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCC-cc---chHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEee
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGE-AE---DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVD 155 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~-~~---~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~ 155 (464)
.|..+-+..+++.+ ++.|..+.+..++ +. +.+..++...+++.|+....... . ..++...+.|+++..++
T Consensus 17 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~--~---~~~~~~~~~~ipvV~~~ 90 (270)
T cd06294 17 PFFIEVLRGISAVA-NENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRED--D---PIIDYLKEEKFPFVVIG 90 (270)
T ss_pred CCHHHHHHHHHHHH-HHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcCC--c---HHHHHHHhcCCCEEEEC
Confidence 46666777788888 8889998876543 22 23444455557888877421111 1 12222223688888886
Q ss_pred C
Q 012429 156 A 156 (464)
Q Consensus 156 ~ 156 (464)
.
T Consensus 91 ~ 91 (270)
T cd06294 91 K 91 (270)
T ss_pred C
Confidence 5
No 88
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=23.85 E-value=3.9e+02 Score=23.75 Aligned_cols=82 Identities=7% Similarity=0.011 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCcc---EEEEcCCcChHHHHHHHHHHHHhcCCCeEE-Eee
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS---LLVTDFSPLREIRRCKDKICNRVSDSVTIH-EVD 155 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~---~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~-~~~ 155 (464)
..|.++|..|.++- .. ...++|..+...+...+++++.... .++...+.......+-..+......+.++. .++
T Consensus 10 ~~l~~~l~sl~~q~-~~-~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld 87 (202)
T cd04185 10 DLLKECLDALLAQT-RP-PDHIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMD 87 (202)
T ss_pred HHHHHHHHHHHhcc-CC-CceEEEEECCCCcchHHHHHHhcCCCceEEEECccccchhhHHHHHHHHHhccCCCEEEEeC
Confidence 56788888886654 22 4578888766666666666665543 233332222222223333333222233333 345
Q ss_pred CCeeEeCc
Q 012429 156 AHNVVPVW 163 (464)
Q Consensus 156 ~~~l~~~~ 163 (464)
++.++++.
T Consensus 88 ~D~~~~~~ 95 (202)
T cd04185 88 DDAIPDPD 95 (202)
T ss_pred CCCCcChH
Confidence 56666654
No 89
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=23.83 E-value=4.6e+02 Score=25.54 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhhc-----CCcEEEEeCCccchHHHHHHHhCccEEEE-----cCCcChHHHHHHHHHHHHhc-C
Q 012429 79 LGFMLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVT-----DFSPLREIRRCKDKICNRVS-D 147 (464)
Q Consensus 79 ~~Fl~esL~~L~~~L~~~~-----G~~L~v~~G~~~~~l~~l~~~~~~~~V~~-----~~~p~~~~~~rd~~v~~~l~-~ 147 (464)
..=+.+.|.+|.+++ ++. |..+++.+ +.+..|++.+|+..+.. +.+|.. +...++.+.++ .
T Consensus 148 ~~~~~~~L~~l~~~~-~~~~~~~~~~~~v~~H----~af~Y~~~~~gl~~~~~~~~~~~~eps~---~~l~~l~~~ik~~ 219 (282)
T cd01017 148 AAAYAKKLEALDQEY-RAKLAKAKGKTFVTQH----AAFGYLARRYGLKQIAIVGVSPEVEPSP---KQLAELVEFVKKS 219 (282)
T ss_pred HHHHHHHHHHHHHHH-HHHHhccCCCeEEEec----ccHHHHHHHCCCeEEecccCCCCCCCCH---HHHHHHHHHHHHc
Confidence 334455566666666 442 33444444 58889999999998754 234443 33456666665 7
Q ss_pred CCeEEEee
Q 012429 148 SVTIHEVD 155 (464)
Q Consensus 148 ~v~~~~~~ 155 (464)
+|++..++
T Consensus 220 ~v~~if~e 227 (282)
T cd01017 220 DVKYIFFE 227 (282)
T ss_pred CCCEEEEe
Confidence 88876653
No 90
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=23.72 E-value=2.8e+02 Score=23.38 Aligned_cols=59 Identities=17% Similarity=0.136 Sum_probs=39.2
Q ss_pred CCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCcc
Q 012429 58 NVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS 122 (464)
Q Consensus 58 ~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~ 122 (464)
+.+++.+|+.... +...+ --+..|.++.+++ ++.|+.++.+.-+..+...+++++++..
T Consensus 23 ~~~~vl~f~~~~~---Cp~C~--~~~~~l~~~~~~~-~~~~v~vv~V~~~~~~~~~~~~~~~~~~ 81 (149)
T cd02970 23 EGPVVVVFYRGFG---CPFCR--EYLRALSKLLPEL-DALGVELVAVGPESPEKLEAFDKGKFLP 81 (149)
T ss_pred CCCEEEEEECCCC---ChhHH--HHHHHHHHHHHHH-HhcCeEEEEEeCCCHHHHHHHHHhcCCC
Confidence 4577777764432 22222 2256788999999 8899998888766666666677777665
No 91
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=23.57 E-value=3.4e+02 Score=26.65 Aligned_cols=64 Identities=2% Similarity=-0.113 Sum_probs=52.9
Q ss_pred EEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCCccc--hHHHHHHHhCccEEEEc
Q 012429 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED--NIPNFVRECGASLLVTD 127 (464)
Q Consensus 63 ~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~--~l~~l~~~~~~~~V~~~ 127 (464)
.+|+.|......|.+--.++.+-..++-+.| .++|++++|+-.+... ++..|-+++++--|-+-
T Consensus 33 ~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l-~~~~ik~lVIACNTASa~al~~LR~~~~iPVvGvi 98 (269)
T COG0796 33 IIYVGDTARFPYGEKSEEEIRERTLEIVDFL-LERGIKALVIACNTASAVALEDLREKFDIPVVGVI 98 (269)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHHHH-HHcCCCEEEEecchHHHHHHHHHHHhCCCCEEEec
Confidence 5899999888889999999999999999999 9999999999877644 56777777777655543
No 92
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=23.52 E-value=2.3e+02 Score=25.61 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=28.6
Q ss_pred hhcCCcEEEEeCCccchHHHHHHHhCccEEEEc
Q 012429 95 ETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 95 ~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~ 127 (464)
++.|+++.|..|.+...+..++++.++..++..
T Consensus 61 ~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g 93 (183)
T PRK09484 61 LTSGIEVAIITGRKSKLVEDRMTTLGITHLYQG 93 (183)
T ss_pred HHCCCEEEEEeCCCcHHHHHHHHHcCCceeecC
Confidence 567999999999998888999999999877653
No 93
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=23.48 E-value=4.7e+02 Score=24.63 Aligned_cols=71 Identities=15% Similarity=0.017 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCCcc----chHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEee
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAE----DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVD 155 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~----~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~ 155 (464)
.|..+-+..+.+.+ +++|..+++...+.. +.+..+....+++.|++...... . ..+....+.|+++..++
T Consensus 12 ~~~~~~~~~i~~~~-~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~--~---~~~~~l~~~~iPvv~~~ 85 (269)
T cd06297 12 EFYRRLLEGIEGAL-LEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYDLT--E---RLAERRLPTERPVVLVD 85 (269)
T ss_pred hhHHHHHHHHHHHH-HHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCccC--h---HHHHHHhhcCCCEEEEc
Confidence 46777788889999 999999988764322 23333445668999988532111 1 22222223689999887
Q ss_pred C
Q 012429 156 A 156 (464)
Q Consensus 156 ~ 156 (464)
.
T Consensus 86 ~ 86 (269)
T cd06297 86 A 86 (269)
T ss_pred c
Confidence 5
No 94
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=23.35 E-value=2.3e+02 Score=32.86 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCcc
Q 012429 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS 122 (464)
Q Consensus 83 ~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~ 122 (464)
.+...+.=++| ++.|++++++.||....-..++++.|+.
T Consensus 552 R~~a~~aI~~l-~~aGI~v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 552 KETTAPALKAL-KASGVTVKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred hhhHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 45677777888 9999999999999999999999999996
No 95
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.32 E-value=4.6e+02 Score=24.77 Aligned_cols=73 Identities=10% Similarity=0.135 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCC--cc---chHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEe
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGE--AE---DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEV 154 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~--~~---~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~ 154 (464)
-|..+-+..+++.+ ++.|..+.+...+ +. +.+..+. ..+++.|+.... .. ......+++..+.||++..+
T Consensus 12 ~f~~~~~~gi~~~~-~~~G~~~~~~~~~~d~~~~~~~i~~~~-~~~vdgiii~~~-~~--~~~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 12 TWCAQGKQAADEAG-KLLGVDVTWYGGALDAVKQVAAIENMA-SQGWDFIAVDPL-GI--GTLTEAVQKAIARGIPVIDM 86 (272)
T ss_pred hHHHHHHHHHHHHH-HHcCCEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEcCC-Ch--HHhHHHHHHHHHCCCcEEEe
Confidence 47778888899999 9999999988643 22 2333333 468999988531 11 11223444444468999998
Q ss_pred eCC
Q 012429 155 DAH 157 (464)
Q Consensus 155 ~~~ 157 (464)
+..
T Consensus 87 ~~~ 89 (272)
T cd06313 87 GTL 89 (272)
T ss_pred CCC
Confidence 754
No 96
>PLN02954 phosphoserine phosphatase
Probab=23.25 E-value=95 Score=28.78 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCcc
Q 012429 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS 122 (464)
Q Consensus 82 l~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~ 122 (464)
+..++.++-+.| ++.|+++.|..+.....+..+++..++.
T Consensus 85 l~pg~~e~l~~l-~~~g~~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 85 LSPGIPELVKKL-RARGTDVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred CCccHHHHHHHH-HHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence 445667777777 7778888777777777777777777665
No 97
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.80 E-value=4.7e+02 Score=25.65 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhhc-------CCcEEEEeCCccchHHHHHHHhCccEEEE-----cCCcChHHHHHHHHHHHHhc
Q 012429 79 LGFMLRGLRLLQRNIEETF-------QILFFLFQGEAEDNIPNFVRECGASLLVT-----DFSPLREIRRCKDKICNRVS 146 (464)
Q Consensus 79 ~~Fl~esL~~L~~~L~~~~-------G~~L~v~~G~~~~~l~~l~~~~~~~~V~~-----~~~p~~~~~~rd~~v~~~l~ 146 (464)
..=+.+-|.+|++++ ++. |..+++.+ +.+..|++.+|.+.+.. +.+|.. +.-.++.+.++
T Consensus 152 ~~~~~~~L~~l~~~~-~~~l~~~~~~~~~~v~~H----~af~Y~~~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik 223 (287)
T cd01137 152 AAAYKAKLKALDEWA-KAKFATIPAEKRKLVTSE----GAFSYFAKAYGLKEAYLWPINTEEEGTP---KQVATLIEQVK 223 (287)
T ss_pred HHHHHHHHHHHHHHH-HHHHhcCCcccCEEEEec----ccHHHHHHHcCCeEeecccCCCCCCCCH---HHHHHHHHHHH
Confidence 344556677777766 431 23344444 58899999999998764 234443 33456666665
Q ss_pred -CCCeEEEe
Q 012429 147 -DSVTIHEV 154 (464)
Q Consensus 147 -~~v~~~~~ 154 (464)
.+|++..+
T Consensus 224 ~~~v~~if~ 232 (287)
T cd01137 224 KEKVPAVFV 232 (287)
T ss_pred HhCCCEEEE
Confidence 68887665
No 98
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.79 E-value=1.3e+02 Score=28.28 Aligned_cols=49 Identities=31% Similarity=0.463 Sum_probs=36.6
Q ss_pred cccCC-CCCcccceeeecCCCCCCcc-------------cccccceeEEeccC----Ccceeeeeec
Q 012429 414 IDGRD-PNGYVGCMWSICGVHDQVSL-------------YHFALFSFFILFPG----WNQYLCLQIS 462 (464)
Q Consensus 414 lD~d~-a~n~g~wqw~agG~~~r~~~-------------~~~~~~~~~~~~~~----~~~~~~~~~~ 462 (464)
|++.+ ++|...|-|+.-|--|-||. --|-+-+.+.+-|. =|.-|||.||
T Consensus 25 i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFktntRLCLSiS 91 (244)
T KOG0894|consen 25 IVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKTNTRLCLSIS 91 (244)
T ss_pred hccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceecCceEEEecc
Confidence 55554 68899999998888888875 23556677777664 4778999998
No 99
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=22.68 E-value=5e+02 Score=22.89 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=43.7
Q ss_pred HHHHHHHHH---HhhcCCcEEEEeCCccchHHHHHHHh--CccEEEEcCCcC-hHHHHHHHHHHHHhc-CCCeEEEeeCC
Q 012429 85 GLRLLQRNI---EETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPL-REIRRCKDKICNRVS-DSVTIHEVDAH 157 (464)
Q Consensus 85 sL~~L~~~L---~~~~G~~L~v~~G~~~~~l~~l~~~~--~~~~V~~~~~p~-~~~~~rd~~v~~~l~-~~v~~~~~~~~ 157 (464)
+|.++.+.| .+++|+.+.+++.+.+..|-+.+.+. .++.|+.|.--+ ... -++..+++ -++++.+++-+
T Consensus 26 tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS----~Ai~DAl~~~~~P~vEVHiS 101 (140)
T PF01220_consen 26 TLEDIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTS----IAIRDALKAISIPVVEVHIS 101 (140)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-----HHHHHHHHCCTS-EEEEESS
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhcccc----HHHHHHHHcCCCCEEEEEcC
Confidence 445554444 03458999999988877776666543 578898874211 111 24445554 57999999877
Q ss_pred eeEeCc
Q 012429 158 NVVPVW 163 (464)
Q Consensus 158 ~l~~~~ 163 (464)
.++..+
T Consensus 102 Ni~~RE 107 (140)
T PF01220_consen 102 NIHARE 107 (140)
T ss_dssp -GGGS-
T ss_pred Cccccc
Confidence 766554
No 100
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=22.61 E-value=1.6e+02 Score=30.28 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=34.1
Q ss_pred HHHHhhcCC--cEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeE
Q 012429 91 RNIEETFQI--LFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTI 151 (464)
Q Consensus 91 ~~L~~~~G~--~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~ 151 (464)
.+| +++|+ ..+++.+.|-....+.+-+.++..|+.-.+|....+..-.++.+.|+ .||+|
T Consensus 36 ~~l-~~lgi~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V 98 (360)
T PRK14719 36 LSL-KNLKINANFITVSNTPVFQIADDLIAENISEVILLTDFDRAGRVYAKNIMEEFQSRGIKV 98 (360)
T ss_pred HHH-HHcCCCCcEEEEeCCchHHHHHHHHHcCCCEEEEEECCCCCCCccchHHHHHHHHCCCEE
Confidence 356 77787 46666777755555555556888887733443211211223445554 68887
No 101
>PRK09989 hypothetical protein; Provisional
Probab=22.46 E-value=5.1e+02 Score=24.65 Aligned_cols=78 Identities=10% Similarity=-0.008 Sum_probs=46.3
Q ss_pred HHHHHHHhhhCCCCEEEEEEec-CCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC----------CccchHHHH
Q 012429 47 LIHAVDQANKNNVPVAVAFNLF-DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG----------EAEDNIPNF 115 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~d-p~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G----------~~~~~l~~l 115 (464)
+..+++.|.+.|.+.+.++.-. |.. .........+.++|+.+.+.. ++.|+.|.+..= +..+....+
T Consensus 87 l~~~i~~A~~lg~~~v~v~~g~~~~~-~~~~~~~~~~~~~l~~l~~~a-~~~gv~l~lE~l~~~~~~~~~~~~~~~~~~l 164 (258)
T PRK09989 87 IDLALEYALALNCEQVHVMAGVVPAG-EDAERYRAVFIDNLRYAADRF-APHGKRILVEALSPGVKPHYLFSSQYQALAI 164 (258)
T ss_pred HHHHHHHHHHhCcCEEEECccCCCCC-CCHHHHHHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCCCCCCccCCHHHHHHH
Confidence 5566666777788866443211 111 111334567899999999999 999999876431 112234456
Q ss_pred HHHhCccEEEE
Q 012429 116 VRECGASLLVT 126 (464)
Q Consensus 116 ~~~~~~~~V~~ 126 (464)
+++.+-..|-+
T Consensus 165 l~~v~~~~v~l 175 (258)
T PRK09989 165 VEEVARDNVFI 175 (258)
T ss_pred HHHcCCCCeEE
Confidence 66655554544
No 102
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=22.44 E-value=3.3e+02 Score=26.24 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=43.0
Q ss_pred HHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC--------CccchHHHHHHH
Q 012429 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG--------EAEDNIPNFVRE 118 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G--------~~~~~l~~l~~~ 118 (464)
+..+++.|.+.|.+.+.+..-.... ......+.-+.++|+.+.+.. ++.|+.|.+-.- +..+.+.+++++
T Consensus 87 ~~~~i~~A~~lG~~~v~~~~g~~~~-~~~~~~~~~~~~~l~~l~~~a-~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~ 164 (279)
T cd00019 87 LKDEIERCEELGIRLLVFHPGSYLG-QSKEEGLKRVIEALNELIDKA-ETKGVVIALETMAGQGNEIGSSFEELKEIIDL 164 (279)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHhc-cCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHh
Confidence 3445566677777755432221100 122445567788888888888 888998887541 122455667776
Q ss_pred hC
Q 012429 119 CG 120 (464)
Q Consensus 119 ~~ 120 (464)
.+
T Consensus 165 v~ 166 (279)
T cd00019 165 IK 166 (279)
T ss_pred cC
Confidence 65
No 103
>PRK00865 glutamate racemase; Provisional
Probab=22.42 E-value=3e+02 Score=26.64 Aligned_cols=62 Identities=2% Similarity=0.009 Sum_probs=50.5
Q ss_pred EEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCCccc--hHHHHHHHhCccEEE
Q 012429 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED--NIPNFVRECGASLLV 125 (464)
Q Consensus 63 ~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~--~l~~l~~~~~~~~V~ 125 (464)
.+|+.|....+.|.+-...+.+-+.+.-+.| .+.|.+.+|+-.+... .+.+|-+.+++--|-
T Consensus 33 ~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L-~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvig 96 (261)
T PRK00865 33 IIYVGDTARFPYGEKSEEEIRERTLEIVEFL-LEYGVKMLVIACNTASAVALPDLRERYDIPVVG 96 (261)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHHHH-HhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEe
Confidence 5899999888888888899999999999999 9999999999887654 466776766664443
No 104
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=22.32 E-value=2.4e+02 Score=28.74 Aligned_cols=85 Identities=12% Similarity=0.059 Sum_probs=48.5
Q ss_pred hhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhh-cCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcCh-
Q 012429 55 NKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET-FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR- 132 (464)
Q Consensus 55 ~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~-~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~- 132 (464)
.+.|.+|++.+++++. +... .+++=| ++ -... -..++.|.++++.+|.+.+..+.|...
T Consensus 56 HknGV~Vlgti~~e~~----~~~~---------~~~~lL-~~~~~~~-----~~~a~kLv~lak~yGfDGw~iN~E~~~~ 116 (339)
T cd06547 56 HRNGVPVLGTFIFEWT----GQVE---------WLEDFL-KKDEDGS-----FPVADKLVEVAKYYGFDGWLINIETELG 116 (339)
T ss_pred HhcCCeEEEEEEecCC----CchH---------HHHHHh-ccCcccc-----hHHHHHHHHHHHHhCCCceEeeeeccCC
Confidence 3589999999998764 1111 122223 21 1111 112467888999999999999765422
Q ss_pred --H----HHHHHHHHHHHhcC---CCeEEEeeCCe
Q 012429 133 --E----IRRCKDKICNRVSD---SVTIHEVDAHN 158 (464)
Q Consensus 133 --~----~~~rd~~v~~~l~~---~v~~~~~~~~~ 158 (464)
. -....+.+.+.+++ +..+.-+|+.+
T Consensus 117 ~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t 151 (339)
T cd06547 117 DAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSMT 151 (339)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCC
Confidence 1 11234444454432 67777777643
No 105
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=22.17 E-value=6.2e+02 Score=24.12 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=44.1
Q ss_pred CccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCc-E--EEEe-CC---c----
Q 012429 40 RVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQIL-F--FLFQ-GE---A---- 108 (464)
Q Consensus 40 Rl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~-L--~v~~-G~---~---- 108 (464)
-+..|++|..|++.+++.+..|..+=.+.+.-.+.+..|+ ..|-+-+ ++.|++ + +.+. |. |
T Consensus 9 ~~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl-------~al~~~a-~~~gv~~V~vH~f~DGRDt~P~S~~ 80 (223)
T PF06415_consen 9 SFFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHL-------FALIKLA-KKQGVKKVYVHAFTDGRDTPPKSAL 80 (223)
T ss_dssp GGGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHH-------HHHHHHH-HHTT-SEEEEEEEE-SSSS-TTTHH
T ss_pred CcccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHH-------HHHHHHH-HHcCCCEEEEEEecCCCCCCcchHH
Confidence 3678999999999888877777766666654333344433 3444445 666876 3 3332 32 2
Q ss_pred --cchHHHHHHHhCccEEEE
Q 012429 109 --EDNIPNFVRECGASLLVT 126 (464)
Q Consensus 109 --~~~l~~l~~~~~~~~V~~ 126 (464)
.+.|.+.+++.+...|-+
T Consensus 81 ~yl~~l~~~l~~~~~g~IAs 100 (223)
T PF06415_consen 81 KYLEELEEKLAEIGIGRIAS 100 (223)
T ss_dssp HHHHHHHHHHHHHTCTEEEE
T ss_pred HHHHHHHHHHHhhCCceEEE
Confidence 234445556666666655
No 106
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=22.04 E-value=2.4e+02 Score=32.85 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCcc
Q 012429 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS 122 (464)
Q Consensus 83 ~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~ 122 (464)
.+...+.=++| ++.|++++++.||....-..++++.|+.
T Consensus 552 R~~a~~aI~~l-~~aGI~v~miTGD~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 552 KESAAPAIAAL-RENGVAVKVLTGDNPIVTAKICREVGLE 590 (903)
T ss_pred HHHHHHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 34677777888 9999999999999999999999999997
No 107
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=21.64 E-value=2.4e+02 Score=32.09 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccE
Q 012429 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL 123 (464)
Q Consensus 84 esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~ 123 (464)
+...+.=++| ++.|++++++.||....-..++++.|+..
T Consensus 445 ~~a~~aI~~l-~~aGI~v~miTGD~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 445 HDTKETIERA-RHLGVEVKMVTGDHLAIAKETARRLGLGT 483 (755)
T ss_pred hhHHHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 3566677788 99999999999999999999999999964
No 108
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.46 E-value=4.4e+02 Score=23.65 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=45.0
Q ss_pred CCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEE
Q 012429 57 NNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV 125 (464)
Q Consensus 57 ~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~ 125 (464)
.|.+|| ||.+..+.-...... ....+++-.++ +++|..++=+.-++.+...+++++++.+--.
T Consensus 29 ~Gk~VV-LyFYPk~~TpgCT~E----a~~Frd~~~ef-~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~L 91 (157)
T COG1225 29 RGKPVV-LYFYPKDFTPGCTTE----ACDFRDLLEEF-EKLGAVVLGISPDSPKSHKKFAEKHGLTFPL 91 (157)
T ss_pred cCCcEE-EEECCCCCCCcchHH----HHHHHHHHHHH-HhCCCEEEEEeCCCHHHHHHHHHHhCCCcee
Confidence 465555 666665433221111 23678888889 9999999999999999999999999998333
No 109
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=21.13 E-value=3.2e+02 Score=26.40 Aligned_cols=56 Identities=13% Similarity=0.213 Sum_probs=42.3
Q ss_pred CcEEEEeCC--ccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeC
Q 012429 99 ILFFLFQGE--AEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDA 156 (464)
Q Consensus 99 ~~L~v~~G~--~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~ 156 (464)
..+.++.|. ..+.+.+++++.+++.|+=...|+. ....+.+.+.|+ .||++..|.-
T Consensus 43 ~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA--~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 43 PGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFA--AEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred CCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchH--HHHHHHHHHHHhhcCcceEEEEc
Confidence 345666666 4678999999999998886667876 445678888885 7999988753
No 110
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=21.11 E-value=6.4e+02 Score=25.48 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEE--eCCccchHHHHHHHhCccE
Q 012429 46 ALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLF--QGEAEDNIPNFVRECGASL 123 (464)
Q Consensus 46 aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~--~G~~~~~l~~l~~~~~~~~ 123 (464)
-+.+.++.|++.+.||+. -+.....-..+..-...+...+..+.++. . ..+|+.+. +|...+.+.+-+ +.|.+.
T Consensus 36 ~~~avi~AAee~~sPvIl-q~s~~~~~~~g~~~~~~~~~~~~~~a~~a-~-~~VPV~lHLDHg~~~e~i~~ai-~~GftS 111 (321)
T PRK07084 36 QLQAIIQACVETKSPVIL-QVSKGARKYANATLLRYMAQGAVEYAKEL-G-CPIPIVLHLDHGDSFELCKDCI-DSGFSS 111 (321)
T ss_pred HHHHHHHHHHHhCCCEEE-EechhHHhhCCchHHHHHHHHHHHHHHHc-C-CCCcEEEECCCCCCHHHHHHHH-HcCCCE
Confidence 344445556667778773 33222111122222333444444444433 1 13565544 465555444333 349999
Q ss_pred EEEcCCcChH--HHHHHHHHHHHhc-CCCeEEE
Q 012429 124 LVTDFSPLRE--IRRCKDKICNRVS-DSVTIHE 153 (464)
Q Consensus 124 V~~~~~p~~~--~~~rd~~v~~~l~-~~v~~~~ 153 (464)
|-+|-+..+. -.+..++|.+.+. .||.|+-
T Consensus 112 VMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEa 144 (321)
T PRK07084 112 VMIDGSHLPYEENVALTKKVVEYAHQFDVTVEG 144 (321)
T ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9997554333 3345566667664 6876653
No 111
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=20.94 E-value=5.5e+02 Score=23.80 Aligned_cols=71 Identities=4% Similarity=-0.092 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcC-CcChHHHHHHHHHHHHhcCCCeEEEeeCC
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF-SPLREIRRCKDKICNRVSDSVTIHEVDAH 157 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~-~p~~~~~~rd~~v~~~l~~~v~~~~~~~~ 157 (464)
.|..+-+..+.+.+ ++.|..+.+......+...+.....+++.|+... .... ..+......|+++..++..
T Consensus 12 ~~~~~~~~gi~~~~-~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~------~~~~~~~~~~ipvV~~~~~ 83 (261)
T cd06272 12 VALTELVTGINQAI-SKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGESASD------VEYLYKIKLAIPVVSYGVD 83 (261)
T ss_pred hhHHHHHHHHHHHH-HHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCCCCCh------HHHHHHHHcCCCEEEEccc
Confidence 47777788888888 8889888776543222233344556888887642 1111 1222222357888888653
No 112
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=20.68 E-value=2.8e+02 Score=32.02 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCcc
Q 012429 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS 122 (464)
Q Consensus 83 ~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~ 122 (464)
.+...+.=++| ++.|+++.++.||....-..++++.|+.
T Consensus 517 R~~~~~aI~~l-~~aGI~vvmiTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 517 KESTKEAIAAL-FKNGINVKVLTGDNEIVTARICQEVGID 555 (867)
T ss_pred chhHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 34667777888 9999999999999999999999999997
No 113
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=20.68 E-value=4.3e+02 Score=27.46 Aligned_cols=116 Identities=17% Similarity=0.166 Sum_probs=62.4
Q ss_pred CCcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEE-EecCCccccchhhHHHHHHHHHHHHHHHHhhcCCc--EEEE
Q 012429 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF-NLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQIL--FFLF 104 (464)
Q Consensus 28 ~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vf-i~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~--L~v~ 104 (464)
....++|-|-|. +..+-++.. .|..++.|- +.+++..... +..+++.+ ++.|-. |.|+
T Consensus 100 ~a~~Viw~ridq----kSc~kai~~----AGl~~~vV~~~~~~d~l~td----------~~~ie~~i-~~~G~~~iLcvl 160 (389)
T PF05889_consen 100 KAKYVIWPRIDQ----KSCFKAIER----AGLEPVVVENVLEGDELITD----------LEAIEAKI-EELGADNILCVL 160 (389)
T ss_dssp T--EEEEEEEET----HHHHHHHHH----TT-EEEEE-EEEETTEEEEH----------HHHHHHHH-HHHCGGGEEEEE
T ss_pred CCceEEEeeccc----cchHHHHHh----cCCeEEEeeccCCCCeeecc----------HHHHHHHH-HHhCCCCeEEEE
Confidence 445789987654 466654443 465444443 3445443221 23444444 444543 3333
Q ss_pred e------C---CccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc---CCCeEEEeeCCeeEeCc
Q 012429 105 Q------G---EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS---DSVTIHEVDAHNVVPVW 163 (464)
Q Consensus 105 ~------G---~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~---~~v~~~~~~~~~l~~~~ 163 (464)
. + |..+.+.++|++++|-+|+=+. |.-....-...|.+.++ ..+-+.+.|-++++|.+
T Consensus 161 tttscfapr~~D~i~~IakiC~~~~IPhlvNnA-YgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPvG 230 (389)
T PF05889_consen 161 TTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNA-YGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPVG 230 (389)
T ss_dssp EESSTTTTB----HHHHHHHHHHHT--EEEEGT-TTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEESS
T ss_pred EecCccCCCCCccHHHHHHHHHHcCCceEEccc-hhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecCC
Confidence 2 2 3355788999999999998763 22212333456666553 35777888889999986
No 114
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=20.56 E-value=1.5e+02 Score=24.02 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEE
Q 012429 76 ARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124 (464)
Q Consensus 76 ~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V 124 (464)
-|+..++..-+..+.+.| .++|+|++....+.-+...++.+..+...+
T Consensus 31 yR~~G~~~~v~~~~~~~L-~~~g~P~Y~hv~~~N~~~~r~~~~lg~~~~ 78 (89)
T PF08444_consen 31 YRGQGLMSQVMYHLAQYL-HKLGFPFYGHVDEDNEASQRLSKSLGFIFM 78 (89)
T ss_pred HhcCCHHHHHHHHHHHHH-HHCCCCeEeehHhccHHHHHHHHHCCCeec
Confidence 466778888999999999 999999999887777777888887666544
No 115
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=20.50 E-value=2.6e+02 Score=26.67 Aligned_cols=47 Identities=15% Similarity=0.321 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhcCC-cEEEEeCCccchHHHHHHHhCccEEEEcC-CcCh
Q 012429 85 GLRLLQRNIEETFQI-LFFLFQGEAEDNIPNFVRECGASLLVTDF-SPLR 132 (464)
Q Consensus 85 sL~~L~~~L~~~~G~-~L~v~~G~~~~~l~~l~~~~~~~~V~~~~-~p~~ 132 (464)
++..+-+.+ .+.|+ .+.+..+|..+++..+...-.++.|+.+. +|..
T Consensus 84 ~v~~~l~k~-~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWp 132 (227)
T COG0220 84 GVAKALKKI-KELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWP 132 (227)
T ss_pred HHHHHHHHH-HHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCC
Confidence 667777788 88999 99999999999999998887899999975 4543
No 116
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.05 E-value=3.6e+02 Score=26.19 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=13.4
Q ss_pred EEEEeCCccchH-HHHHHHhCccEEEE
Q 012429 101 FFLFQGEAEDNI-PNFVRECGASLLVT 126 (464)
Q Consensus 101 L~v~~G~~~~~l-~~l~~~~~~~~V~~ 126 (464)
++..+|.....+ .+|+++++|+.|++
T Consensus 177 iia~~gPfs~e~n~al~~~~~i~~lVt 203 (256)
T TIGR00715 177 IIAMRGPFSEELEKALLREYRIDAVVT 203 (256)
T ss_pred EEEEeCCCCHHHHHHHHHHcCCCEEEE
Confidence 455555443333 23556666666666
Done!