Query 012429
Match_columns 464
No_of_seqs 227 out of 1722
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 09:16:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umv_A Deoxyribodipyrimidine p 100.0 5E-100 2E-104 801.6 34.0 431 9-443 19-463 (506)
2 2xry_A Deoxyribodipyrimidine p 100.0 9.2E-95 3.1E-99 763.1 28.9 425 8-443 18-463 (482)
3 1dnp_A DNA photolyase; DNA rep 100.0 6.4E-88 2.2E-92 707.2 20.6 382 30-444 2-402 (471)
4 1owl_A Photolyase, deoxyribodi 100.0 7.5E-87 2.6E-91 702.2 26.5 376 28-444 2-409 (484)
5 3fy4_A 6-4 photolyase; DNA rep 100.0 2.5E-87 8.7E-92 709.1 22.4 388 27-445 3-426 (537)
6 3tvs_A Cryptochrome-1; circadi 100.0 7.5E-86 2.6E-90 699.3 21.5 392 28-444 3-440 (538)
7 2j07_A Deoxyribodipyrimidine p 100.0 2.7E-85 9.2E-90 678.5 24.5 362 30-444 3-371 (420)
8 2e0i_A 432AA long hypothetical 100.0 2.9E-85 9.9E-90 680.3 20.6 348 31-444 3-368 (440)
9 1u3d_A Cryptochrome 1 apoprote 100.0 1.6E-84 5.6E-89 688.7 25.8 376 27-444 10-420 (509)
10 1np7_A DNA photolyase; protein 100.0 8E-84 2.7E-88 680.6 26.6 379 29-444 6-415 (489)
11 2wq7_A RE11660P; lyase-DNA com 100.0 1.4E-83 4.8E-88 685.2 27.3 390 30-445 30-450 (543)
12 2j4d_A Cryptochrome 3, cryptoc 100.0 2.5E-83 8.7E-88 680.7 24.6 384 28-445 39-452 (525)
13 3zxs_A Cryptochrome B, rscryb; 100.0 7E-62 2.4E-66 505.8 18.0 367 30-438 16-435 (522)
14 3s3t_A Nucleotide-binding prot 94.0 0.29 1E-05 40.9 9.4 89 38-127 13-115 (146)
15 3dlo_A Universal stress protei 93.9 0.35 1.2E-05 41.5 9.9 88 38-127 32-124 (155)
16 3fdx_A Putative filament prote 93.5 0.47 1.6E-05 39.5 9.9 84 43-127 16-113 (143)
17 3fg9_A Protein of universal st 93.4 0.6 2.1E-05 39.6 10.5 85 42-127 29-126 (156)
18 3tnj_A Universal stress protei 93.2 0.43 1.5E-05 40.1 9.2 89 38-127 14-116 (150)
19 2dum_A Hypothetical protein PH 92.6 0.52 1.8E-05 40.7 9.1 85 42-127 17-124 (170)
20 3hgm_A Universal stress protei 92.3 0.72 2.5E-05 38.4 9.4 84 43-127 15-117 (147)
21 1mjh_A Protein (ATP-binding do 91.2 0.97 3.3E-05 38.5 9.2 84 43-127 18-127 (162)
22 3idf_A USP-like protein; unive 90.6 1.6 5.4E-05 35.9 9.7 82 43-127 14-108 (138)
23 1tq8_A Hypothetical protein RV 90.0 0.57 2E-05 40.5 6.5 88 38-127 25-126 (163)
24 3olq_A Universal stress protei 89.1 6.8 0.00023 37.1 14.2 113 44-157 177-306 (319)
25 1jmv_A USPA, universal stress 88.3 1.8 6.1E-05 35.7 8.3 111 42-155 14-137 (141)
26 2z08_A Universal stress protei 88.0 2.6 9E-05 34.6 9.1 84 43-127 15-106 (137)
27 3loq_A Universal stress protei 87.5 3 0.0001 39.3 10.3 79 38-127 178-258 (294)
28 3mt0_A Uncharacterized protein 84.5 4.1 0.00014 38.3 9.6 83 44-127 155-244 (290)
29 2gm3_A Unknown protein; AT3G01 84.1 11 0.00039 32.1 11.6 83 44-127 28-131 (175)
30 1q77_A Hypothetical protein AQ 82.3 5.8 0.0002 32.4 8.6 89 38-128 12-117 (138)
31 3mt0_A Uncharacterized protein 78.8 6 0.0002 37.1 8.3 79 38-127 15-96 (290)
32 3olq_A Universal stress protei 77.0 16 0.00056 34.3 11.0 89 38-127 15-118 (319)
33 3loq_A Universal stress protei 76.2 10 0.00034 35.6 9.1 88 38-128 30-131 (294)
34 3ab8_A Putative uncharacterize 69.3 9.9 0.00034 34.9 7.1 82 43-127 13-116 (268)
35 3cis_A Uncharacterized protein 68.9 6 0.00021 37.5 5.6 86 38-126 179-273 (309)
36 3cis_A Uncharacterized protein 67.2 18 0.0006 34.1 8.6 83 42-127 31-129 (309)
37 3rjz_A N-type ATP pyrophosphat 67.1 11 0.00036 35.1 6.6 91 54-151 24-119 (237)
38 3ab8_A Putative uncharacterize 49.6 26 0.0009 31.9 6.2 77 38-126 162-240 (268)
39 3fvv_A Uncharacterized protein 44.5 24 0.00083 31.1 4.9 43 83-126 94-136 (232)
40 3n07_A 3-deoxy-D-manno-octulos 39.1 74 0.0025 27.9 7.2 39 91-130 62-100 (195)
41 3dx5_A Uncharacterized protein 38.4 71 0.0024 29.2 7.4 78 47-125 86-168 (286)
42 3h75_A Periplasmic sugar-bindi 37.6 1.5E+02 0.0051 27.9 9.7 72 81-157 18-95 (350)
43 3n1u_A Hydrolase, HAD superfam 37.6 92 0.0032 26.9 7.6 42 90-132 55-96 (191)
44 3mmz_A Putative HAD family hyd 36.8 99 0.0034 26.2 7.6 40 89-130 47-86 (176)
45 3e8m_A Acylneuraminate cytidyl 36.3 91 0.0031 25.7 7.1 42 89-131 39-80 (164)
46 3u80_A 3-dehydroquinate dehydr 36.2 1.3E+02 0.0043 25.7 7.6 77 84-163 29-114 (151)
47 2lnd_A De novo designed protei 36.2 42 0.0014 25.4 4.1 58 84-146 38-100 (112)
48 3cqj_A L-ribulose-5-phosphate 35.2 1.1E+02 0.0038 28.1 8.2 79 47-126 110-193 (295)
49 3gi1_A LBP, laminin-binding pr 33.8 1.1E+02 0.0039 28.6 8.0 69 79-155 156-235 (286)
50 3ij5_A 3-deoxy-D-manno-octulos 33.8 96 0.0033 27.5 7.1 40 89-129 84-123 (211)
51 3mn1_A Probable YRBI family ph 33.5 1E+02 0.0035 26.5 7.2 39 89-128 54-92 (189)
52 2l82_A Designed protein OR32; 33.3 1.6E+02 0.0054 23.6 7.3 52 102-156 6-60 (162)
53 1toa_A Tromp-1, protein (perip 33.1 1.1E+02 0.0039 29.1 7.9 68 80-155 173-253 (313)
54 2iel_A Hypothetical protein TT 32.7 74 0.0025 26.7 5.5 72 82-154 56-133 (138)
55 3ujp_A Mn transporter subunit; 32.2 1.5E+02 0.0051 28.2 8.6 69 79-155 165-246 (307)
56 3qk7_A Transcriptional regulat 30.7 1.6E+02 0.0056 26.8 8.5 72 80-157 23-97 (294)
57 2r8e_A 3-deoxy-D-manno-octulos 29.9 1.4E+02 0.0049 25.4 7.5 42 89-131 61-102 (188)
58 3cx3_A Lipoprotein; zinc-bindi 29.6 1.4E+02 0.0047 27.9 7.8 68 80-155 155-233 (284)
59 2prs_A High-affinity zinc upta 29.4 1.2E+02 0.0041 28.3 7.3 68 80-155 152-230 (284)
60 3n8k_A 3-dehydroquinate dehydr 29.2 1.1E+02 0.0039 26.5 6.3 63 95-163 67-135 (172)
61 3l49_A ABC sugar (ribose) tran 29.1 2.6E+02 0.0089 25.0 9.6 73 80-157 18-95 (291)
62 3jy6_A Transcriptional regulat 29.0 2.5E+02 0.0084 25.1 9.4 71 80-157 20-94 (276)
63 1xvl_A Mn transporter, MNTC pr 28.9 1.7E+02 0.0058 27.9 8.4 68 80-155 180-260 (321)
64 2p9j_A Hypothetical protein AQ 28.6 2.4E+02 0.0081 22.9 9.1 44 87-131 42-85 (162)
65 3kip_A 3-dehydroquinase, type 28.1 1.3E+02 0.0045 26.0 6.5 72 85-163 40-124 (167)
66 3lwz_A 3-dehydroquinate dehydr 28.1 1.9E+02 0.0066 24.6 7.4 64 95-163 46-114 (153)
67 3ayv_A Putative uncharacterize 27.4 1.3E+02 0.0043 27.0 6.9 78 47-126 78-159 (254)
68 3uhf_A Glutamate racemase; str 27.2 1E+02 0.0035 28.9 6.2 61 63-124 52-114 (274)
69 2o1e_A YCDH; alpha-beta protei 26.6 1.4E+02 0.0049 28.3 7.4 69 79-155 167-246 (312)
70 2drn_C 24-residues peptide fro 26.5 29 0.00099 20.1 1.3 16 363-378 8-23 (26)
71 3gv0_A Transcriptional regulat 26.1 1.6E+02 0.0054 26.7 7.5 70 81-157 24-98 (288)
72 3out_A Glutamate racemase; str 26.0 1.3E+02 0.0046 27.9 6.9 62 63-125 35-99 (268)
73 3ngf_A AP endonuclease, family 25.9 1.3E+02 0.0046 27.1 6.9 78 47-126 95-182 (269)
74 3nvb_A Uncharacterized protein 25.7 2.1E+02 0.0074 28.2 8.6 51 80-131 255-313 (387)
75 1k1e_A Deoxy-D-mannose-octulos 25.6 2.5E+02 0.0086 23.5 8.2 40 88-128 42-81 (180)
76 1i60_A IOLI protein; beta barr 24.7 2.4E+02 0.0081 25.2 8.4 76 47-124 86-169 (278)
77 1pq4_A Periplasmic binding pro 24.5 98 0.0033 29.1 5.7 87 67-158 155-247 (291)
78 2pr7_A Haloacid dehalogenase/e 24.2 71 0.0024 25.0 4.1 39 81-120 18-56 (137)
79 3u0h_A Xylose isomerase domain 24.1 2.6E+02 0.0089 25.0 8.6 77 48-126 87-176 (281)
80 3l23_A Sugar phosphate isomera 23.9 2.1E+02 0.0073 26.5 8.0 54 47-104 110-165 (303)
81 3rfu_A Copper efflux ATPase; a 23.6 1.2E+02 0.004 32.9 6.6 44 88-132 561-604 (736)
82 4gxt_A A conserved functionall 22.9 45 0.0015 33.0 3.0 39 82-121 222-260 (385)
83 3ist_A Glutamate racemase; str 22.9 1.4E+02 0.0049 27.7 6.4 62 63-125 33-96 (269)
84 1k77_A EC1530, hypothetical pr 22.7 1.8E+02 0.0062 25.8 7.1 79 46-126 86-175 (260)
85 3tva_A Xylose isomerase domain 22.5 2.1E+02 0.0072 26.0 7.6 77 46-126 103-181 (290)
86 3j08_A COPA, copper-exporting 22.3 79 0.0027 33.5 4.9 46 86-132 462-507 (645)
87 8abp_A L-arabinose-binding pro 21.9 3.4E+02 0.012 24.4 9.0 72 80-157 15-91 (306)
88 3l6u_A ABC-type sugar transpor 21.6 3.5E+02 0.012 24.1 8.9 72 80-157 21-98 (293)
89 3gkn_A Bacterioferritin comigr 21.2 1.3E+02 0.0044 24.7 5.3 45 81-126 53-97 (163)
90 2pwj_A Mitochondrial peroxired 20.8 2.8E+02 0.0095 23.2 7.5 45 83-128 64-112 (171)
91 2vup_A Glutathione peroxidase- 20.7 3.3E+02 0.011 22.9 8.0 59 57-122 47-114 (190)
92 3kws_A Putative sugar isomeras 20.6 2.4E+02 0.0083 25.5 7.6 79 47-126 106-195 (287)
93 1gqo_A Dehydroquinase; dehydra 20.6 3.8E+02 0.013 22.5 8.4 63 95-163 39-107 (143)
94 2jfz_A Glutamate racemase; cel 20.1 1.7E+02 0.0057 26.8 6.2 63 61-124 26-90 (255)
No 1
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=5.2e-100 Score=801.63 Aligned_cols=431 Identities=64% Similarity=1.144 Sum_probs=368.7
Q ss_pred CccccccccccccCccCCCCCcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCC--ccccchhhHHHHHHHH
Q 012429 9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGL 86 (464)
Q Consensus 9 ~~~~~~r~~~~~~~~~~~~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~--~~~~~~~r~~Fl~esL 86 (464)
..++++||++||+++ .+.++.+|||||||||++||+||.+|++.|++.+.||+||||+||. +...+.+|++||++||
T Consensus 19 ~~~~~~r~~~l~~~~-~~~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~~~~~~r~~FL~~sL 97 (506)
T 3umv_A 19 SPAHPSRVRVIHPGG-GKPGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGL 97 (506)
T ss_dssp CCSCGGGEEEEECCC-SCTTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGGGCCHHHHHHHHHHH
T ss_pred cccCHhHhhhhccCC-CCCCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhccCCCHHHHHHHHHHH
Confidence 567889999999886 4567889999999999999999999998877677899999999999 5578899999999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHh---cCCCeEEEeeCCeeEeCc
Q 012429 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV---SDSVTIHEVDAHNVVPVW 163 (464)
Q Consensus 87 ~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l---~~~v~~~~~~~~~l~~~~ 163 (464)
.+|+++| +++|++|+|+.|++.++ ++|+++++|+.|+++++|...+++||++|++.| +.||+++++++++|++|+
T Consensus 98 ~dL~~~L-~~lG~~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~ 175 (506)
T 3umv_A 98 RRLAADA-AARHLPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVW 175 (506)
T ss_dssp HHHHHHH-HHTTCCEEEESSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHH
T ss_pred HHHHHHH-HHcCCceEEEecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEEECcc
Confidence 9999999 99999999999999999 999999999999999999988889999999988 369999999999999999
Q ss_pred ccccCCCCccchhhHHHHhhCCCcCCCCCCCCCCCCcCCC-CCCCCChhHHHHHHHhcCCCCCCCCCCCchHHHHHHHhc
Q 012429 164 VASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG-TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242 (464)
Q Consensus 164 ~~~~~~~~~~~t~~~~~~k~~~~~~~~~p~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~ 242 (464)
.+.++.+|.++||++++.+.+..++.+.|.. +.+.+... .+..+++..+.+.+...+..++...+++|||++|+++|+
T Consensus 176 ~v~~~~~~~~~t~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~ 254 (506)
T 3umv_A 176 TASAKMEYSAKTFRGKVSKVMDEYLVEFPEL-PAVVPWDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALL 254 (506)
T ss_dssp HHCSSCCSSHHHHHHHHHTTHHHHSCCCCCC-CCCCCCCSCCCCCCCHHHHHHHHHHTSCCCCCCCSSCCSHHHHHHHHH
T ss_pred cccCCCCCCccCHHHHHHHhccccccCCCCC-CCccccccccccccChhhhhhhhccccccccccCCCCCCHHHHHHHHH
Confidence 8778888999999999887665444444432 11111111 122334444422221333334433457999999999998
Q ss_pred cchhHHHhhhccCCCCCCCCCCCCCCCCcCchhhcCCccCHHHHHHHHHHHhhhCCccHHHHHHHhhhhHHHHHHHHHhC
Q 012429 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322 (464)
Q Consensus 243 ~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~ 322 (464)
|++++|+++++.+|+++||.|+..++||+|||||+||+||||+|++++.+......+++++|++||+|||||++++++++
T Consensus 255 ~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~lS~r~v~~~~~~~~~~~~~~~~~f~~eL~WRREf~~~~~~~~ 334 (506)
T 3umv_A 255 GSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQ 334 (506)
T ss_dssp CTTTCHHHHTGGGHHHHTTCTTCGGGSCCCHHHHHHTSSCHHHHHHHHHHHGGGSHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred hhHHHHHHhHHhhhccccCCccccCCCccCCHHHhCCCcCHHHHHHHHHHHHhhccccHHHHHHHHHHhHHHHHHHHHhC
Confidence 88889999999999999999975479999999999999999999999987765456678999999999889999999999
Q ss_pred CCCCccccchHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHHhhhhcCCCCHHHHH
Q 012429 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEAL 402 (464)
Q Consensus 323 p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vAk~LidWr~G~~~a~ 402 (464)
|+|+++...++|..+++.+|..|++++.+.+++|++|+|||||||||||||++|||||||+||||||+||||+.|+++|+
T Consensus 335 p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mHnr~Rm~~ak~ll~W~~g~~~~~ 414 (506)
T 3umv_A 335 PQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEAL 414 (506)
T ss_dssp TTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSSSHHHHH
T ss_pred cchhhhhccchhhhhhhhhhcccchhhhccHHHHHcCCCCCHHHHHHHHHHHHhCchhHHHHHHHHHhhccCCCCHHHHH
Confidence 99998877889998888888766655556799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCcccCCCCCcccceeeecCCCCCC-----cc---ccccc
Q 012429 403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQV-----SL---YHFAL 443 (464)
Q Consensus 403 ~~~~~f~~~yllD~d~a~n~g~wqw~agG~~~r~-----~~---~~~~~ 443 (464)
++++||+++||||||+|||||||||++||+||+| || ++||+
T Consensus 415 ~~a~~f~~~~llD~d~~~n~~~wqw~a~G~~~~g~~~~p~fg~iR~~np 463 (506)
T 3umv_A 415 STAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNY 463 (506)
T ss_dssp HHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCH
T ss_pred HHHHHHhhccCcccCccccccceeEEecCCCCCCCccccccCcceeECH
Confidence 9999999999999999999999999998776655 55 66654
No 2
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=9.2e-95 Score=763.11 Aligned_cols=425 Identities=48% Similarity=0.821 Sum_probs=349.7
Q ss_pred CCccccccccccccCccCCCCCcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHH
Q 012429 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87 (464)
Q Consensus 8 ~~~~~~~r~~~~~~~~~~~~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~ 87 (464)
.-.++++||+++|+++. +++ .+|+|||||||++||+||.+|++.|++.+.+|+||||+||.+...+.+|+.||++||+
T Consensus 18 ~~~~~~~r~~~~~~~~~-~~g-~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~~sL~ 95 (482)
T 2xry_A 18 GSHMNPKRIRALKSGKQ-GDG-PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGIRQYEFMLKGLQ 95 (482)
T ss_dssp TCCCCGGGEEEEECCCC-CSS-CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGGSCHHHHHHHHHHHH
T ss_pred cccCCHHHhHHhhcCCC-CCC-cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhccCHHHHHHHHHHHH
Confidence 33477999999999865 344 8999999999999999999999877666789999999999988889999999999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEeeCCeeEeCccccc
Q 012429 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASE 167 (464)
Q Consensus 88 ~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~~~~l~~~~~~~~ 167 (464)
+|+++| +++|++|+|+.|++.++|.+|+++++|+.|+++.++...+++++++|++.+ ||+++++++++|++++.+.+
T Consensus 96 ~L~~~L-~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l--gi~~~~~~~~~l~~~~~~~~ 172 (482)
T 2xry_A 96 ELEVSL-SRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI--SIPFFEVDAHNVVPCWEASQ 172 (482)
T ss_dssp HHHHHH-HHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC--CSCEEEECCSSSSCHHHHCS
T ss_pred HHHHHH-HHcCCcEEEEeCCHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc--CCEEEEEeCCEEcccccccc
Confidence 999999 999999999999999999999999999999999888888888999998877 89999999999999987777
Q ss_pred CCCCccchhhHHHHhhCCCcCCCCCCCCCCCCcCCC-CCCCC-C-hhHH-----HHHHH--hcCCCCCCC---CCCCchH
Q 012429 168 KLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG-TRQSI-D-WDSI-----IAAVL--RKGAEVPEI---GWCESGE 234 (464)
Q Consensus 168 ~~~~~~~t~~~~~~k~~~~~~~~~p~~~p~~~~~~~-~~~~~-~-~~~~-----~~~~~--~~~~~~~~~---~~~~gGe 234 (464)
+++|++||||+++.+.+..++.+.|...|.+.+... .+... + ...+ .+.+. .++...... ..++|||
T Consensus 173 ~~~~~v~tf~~~~~~~~~~~~~~~p~~~p~~~~~~lp~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ge 252 (482)
T 2xry_A 173 KHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPELSAGAGMVETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGE 252 (482)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCCCCCCCCCCSSCCC---------CHHHHHHHHHHHHGGGCCBCTTSCBCCCTTSCCCSH
T ss_pred CCCCceecchHHHHHHHHhhccccCCCCCCCCccccCCccchhhhhhhhcccCCCCCcchhhhccccccccccCCCCCcH
Confidence 778999999988877654333322211011111000 00000 0 1111 11110 112111111 1479999
Q ss_pred HHHHHHhccchhHHHhhhccCCCCCCCCCCCCCCCCcCchhhcCCccCHHHHHHHHHHHhhhCCccHHHHHHHhhhhHHH
Q 012429 235 DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314 (464)
Q Consensus 235 ~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~~~~~~~~fi~eL~wRrEf 314 (464)
++|+++| ++|+++++.+|+++||.|+. ++||+|||||+||+||||+|++++.+... ..+++++|++||+|||||
T Consensus 253 ~~A~~~L----~~Fl~~~l~~Y~~~Rd~p~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~-~~~~~e~fl~ELi~WREf 326 (482)
T 2xry_A 253 KAAKKVM----ESFIADRLDSYGALRNDPTK-NMLSNLSPYLHFGQISSQRVVLEVEKAES-NPGSKKAFLDEILIWKEI 326 (482)
T ss_dssp HHHHHHH----HHHHHHTHHHHHHHTTCTTS-CCSCCCHHHHHTTSSCHHHHHHHHHHCCC-CTTHHHHHHHHHTHHHHH
T ss_pred HHHHHHH----HHHHHHHHhhhccccCCCCc-cCCCCcCHHHhCCccCHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999998 99999999999999999999999976542 356789999999955699
Q ss_pred HHHHHHhCCCCCccccchHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHHhhhhcC
Q 012429 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEW 394 (464)
Q Consensus 315 ~~~~~~~~p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vAk~LidW 394 (464)
++++++++|+|+++++.++|.+.++.+|..|++++.+.+++|++|+|||||||||||||++|||||||+||||||+||||
T Consensus 327 ~~~~~~~~P~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~aw~~G~TG~P~VDAaMrqL~~tG~mHnr~RM~vak~LidW 406 (482)
T 2xry_A 327 SDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYWAKKILEW 406 (482)
T ss_dssp HHHHHHHCTTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCcccccccchHHHhhhhhhcccCchhhhHHHHHHHhCCcCCHHHHHHHHHHHHhCccccHHHHHHHcccCCC
Confidence 99999999999988877789887777665565555567999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhccCcccCCCCCcccceeeecCCCCCC-----cc---ccccc
Q 012429 395 TTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQV-----SL---YHFAL 443 (464)
Q Consensus 395 r~G~~~a~~~~~~f~~~yllD~d~a~n~g~wqw~agG~~~r~-----~~---~~~~~ 443 (464)
+.+.++++..+++|+++|+||||+|||+|||||++||+||+| || ++||+
T Consensus 407 ~~~ge~~f~~~l~Lnd~y~iD~d~ann~ggwqw~agG~~~~~~~~~p~fg~~R~fnp 463 (482)
T 2xry_A 407 SESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSY 463 (482)
T ss_dssp SSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCH
T ss_pred CchHHHHHHHHHHhcCceeccCCCccchhHhhhhhcCCCCCCcccccccccceeech
Confidence 666667888888999999999999999999999999898875 56 77765
No 3
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=6.4e-88 Score=707.25 Aligned_cols=382 Identities=19% Similarity=0.237 Sum_probs=309.8
Q ss_pred cEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcc---ccchhhHHHHHHHHHHHHHHHHhhcCCcEEEE--
Q 012429 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---GAKARQLGFMLRGLRLLQRNIEETFQILFFLF-- 104 (464)
Q Consensus 30 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~-- 104 (464)
++|||||||||++||+||.+|++. + +.+|+||||+||.++ ..+.+|+.||++||++|+++| +++|++|+|+
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~--~-~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L-~~~G~~L~v~~~ 77 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRN--S-SARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIAL-AEKGIPLLFREV 77 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSS--T-TSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHH-HHTTCCEEEEEC
T ss_pred CEEEEeCCCCcccchHHHHHHHhC--C-CCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEEEc
Confidence 479999999999999999999751 1 349999999999864 578999999999999999999 9999999999
Q ss_pred --eCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEeeCCeeEeCccccc--CCCCccch-hhHH
Q 012429 105 --QGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASE--KLEYSAKT-LRGK 179 (464)
Q Consensus 105 --~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~~~~l~~~~~~~~--~~~~~~~t-~~~~ 179 (464)
.|++.++|.+|+++++|+.|+++.++...+++||++|++.|+. |+++++++++|++++.+.+ +++|.+|| |+++
T Consensus 78 ~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~-i~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~ 156 (471)
T 1dnp_A 78 DDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNA 156 (471)
T ss_dssp SSHHHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT-SEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC-cEEEEecCCEEEchhhcccCCCCCCcchHHHHHH
Confidence 8999999999999999999999988888889999999999966 9999999999999986544 57899999 7788
Q ss_pred HHhhCCC-cCCCCCCCCCCCCcCCCCCCCCChhHHHHHHHhcCCCCCCCCCCCchHHHHHHHhccchhHHHhhhccCCCC
Q 012429 180 INKLLPE-YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258 (464)
Q Consensus 180 ~~k~~~~-~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~ 258 (464)
|.+.+.+ ...+.|. |...+. +. +....+ +++ .+.........++|||++|+++| ++|+++++.+|++
T Consensus 157 ~~~~l~~~~p~~~~~--p~~~~~---~~-~~~~~~-~~l-~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl~~~l~~Y~~ 224 (471)
T 1dnp_A 157 WLKRLREGMPECVAA--PKVRSS---GS-IEPSPS-ITL-NYPRQSFDTAHFPVEEKAAIAQL----RQFCQNGAGEYEQ 224 (471)
T ss_dssp HHHHHHTCCCCCCCC--CCCCTT---CC-CCCCCC-CCC-CSCCCCCCTTTSCCSHHHHHHHH----HHHHHTHHHHHHH
T ss_pred HHHhccccCCCCCCC--ccccCc---cc-ccCCCC-ccc-CCCccccccccCCCCHHHHHHHH----HHHHHHHHHHhhh
Confidence 8876432 1111121 101000 00 000000 111 11111010134799999999999 9999999999999
Q ss_pred CCCCCCCCCCCCcCchhhcCCccCHHHHHHHHHHHhhh-CCcc-HHHHHHHhhhhHHHHHHHHHhCCCCCccccchHHHH
Q 012429 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL-CPEA-IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWAR 336 (464)
Q Consensus 259 ~Rd~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~-~~~~-~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~~~~w~~ 336 (464)
+||.|+. ++||+|||||+||+||||+|++++.+.... ..++ .++|++||+|| ||++++++++|++....+..++..
T Consensus 225 ~rd~p~~-~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~fl~eL~WR-Ef~~~~~~~~P~~~~~~~~~~~~~ 302 (471)
T 1dnp_A 225 QRDFPAV-EGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLNELIWR-EFYRHLITYHPSLCKHRPFIAWTD 302 (471)
T ss_dssp HTTCTTS-CCSCCCHHHHHHTSSCHHHHHHHHHHHCGGGGGTSTTHHHHHHHHHH-HHHHHHHHHCGGGGGTCCSSGGGG
T ss_pred ccCCcCc-cCCCCCCHhHcCCCcCHHHHHHHHHHHhccccccccHHHHHHHHHHH-HHHHHHHHhCCchhccCCcchhhh
Confidence 9999998 899999999999999999999999876432 2356 88999999997 999999999999875422212211
Q ss_pred hhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHH----hhh-hcCCCCHHHHHHHHHHHhhc
Q 012429 337 KSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGPEEALAIAIYLNDK 411 (464)
Q Consensus 337 ~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vA----k~L-idWr~G~~~a~~~~~~f~~~ 411 (464)
. + .+.+|++ .|++|++|+|||||||||||||++|||||||+||+|| |+| |||+.|++ ||+++
T Consensus 303 ~-l-~w~~d~~----~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~RMivAsFL~k~L~idWr~g~~-------~F~~~ 369 (471)
T 1dnp_A 303 R-V-QWQSNPA----HLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGER-------YFMSQ 369 (471)
T ss_dssp G-S-CCCCCHH----HHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHH-------HHHTT
T ss_pred c-C-CCcCCHH----HHHHHHhCCCCCHHHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCchHHHH-------HHHHh
Confidence 1 1 1113443 5999999999999999999999999999999999998 788 99999997 99999
Q ss_pred cCcccCCCCCcccceeeec-CCCCCCcccccccc
Q 012429 412 YEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALF 444 (464)
Q Consensus 412 yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~ 444 (464)
|||||+|||+|||||+|| |+|++|||++||+.
T Consensus 370 -llD~d~a~n~g~wqw~ag~G~d~~py~RifNp~ 402 (471)
T 1dnp_A 370 -LIDGDLAANNGGWQWAASTGTDAAPYFRIFNPT 402 (471)
T ss_dssp -CTTCCHHHHHHHHHHHTTCSTTCCCTTCCCCHH
T ss_pred -ccCCCcccCHHHHHhhcCCCCCCCCcceecCHH
Confidence 999999999999999999 99999999999874
No 4
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=7.5e-87 Score=702.15 Aligned_cols=376 Identities=21% Similarity=0.282 Sum_probs=310.4
Q ss_pred CCcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcc---ccchhhHHHHHHHHHHHHHHHHhhcCCcEEEE
Q 012429 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---GAKARQLGFMLRGLRLLQRNIEETFQILFFLF 104 (464)
Q Consensus 28 ~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~ 104 (464)
.+.+|||||||||++||+||.+|++. +.+|+||||+||.++ ..+.+|+.||++||++|+++| +++|++|+|+
T Consensus 2 ~~~~l~WfrrDLRl~Dn~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L-~~~G~~L~v~ 76 (484)
T 1owl_A 2 AAPILFWHRRDLRLSDNIGLAAARAQ----SAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRY-QQAGSRLLLL 76 (484)
T ss_dssp -CCEEEEESSCCCSSSCHHHHHHHHH----CSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHH-HHHTSCEEEE
T ss_pred CccEEEEECCCCCcchhHHHHHHHhc----CCCEEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEE
Confidence 35689999999999999999999862 348999999999864 578999999999999999999 9999999999
Q ss_pred eCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCccccc--CCCCccch-hhHHH
Q 012429 105 QGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVASE--KLEYSAKT-LRGKI 180 (464)
Q Consensus 105 ~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~~~--~~~~~~~t-~~~~~ 180 (464)
.|++.++|.+|+++++|+.|+++.++...+++||++|++.|+ .||+++++++++|++++.+.+ +++|.+|| |+++|
T Consensus 77 ~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~ 156 (484)
T 1owl_A 77 QGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNW 156 (484)
T ss_dssp ESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHH
T ss_pred eCCHHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEEecCCEEEchhhhcccCCCCchhhHHHHHHH
Confidence 999999999999999999999998888888999999999996 899999999999999986544 57899999 67888
Q ss_pred HhhCCCcCCCCCCCCCCCCcCCCC-------CC-CCChhHHHHHHHhcCCCC-CCCCCCCchHHHHHHHhccchhHHHhh
Q 012429 181 NKLLPEYLIDYPMLEQPIEKWTGT-------RQ-SIDWDSIIAAVLRKGAEV-PEIGWCESGEDAAMEVLKGSKDGFLTK 251 (464)
Q Consensus 181 ~k~~~~~~~~~p~~~p~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~-~~~~~~~gGe~~A~~~L~~~~~~Fl~~ 251 (464)
.+.+. ..|.|. |...+.... +. ... ++++..++... ... .++|||++|+++| ++|+++
T Consensus 157 ~~~~~--~~p~~~--p~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~-~~~~Ge~~A~~~L----~~Fl~~ 223 (484)
T 1owl_A 157 QAQPK--PTPVAT--PTELVDLSPEQLTAIAPLLLSE----LPTLKQLGFDWDGGF-PVEPGETAAIARL----QEFCDR 223 (484)
T ss_dssp HHSCC--CCCCCC--CCSCCCCCHHHHHHHGGGCCSS----CCCTGGGTCCCCSCC-SSCSSHHHHHHHH----HHHHHT
T ss_pred HHhcC--CCCCCC--ccccccccccccccccccccCC----CCCHHHcCCCccccC-cCCCCHHHHHHHH----HHHHHH
Confidence 87654 222222 111110000 00 000 01111111110 012 4799999999999 999999
Q ss_pred hccCCCCCCCCCCCCCCCCcCchhhcCCccCHHHHHHHHHHHhhh-----CCccHHHHHHHhhhhHHHHHHHHHhCCCCC
Q 012429 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL-----CPEAIDTFLEELIVRRELADNFCFYQPNYD 326 (464)
Q Consensus 252 ~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~-----~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~ 326 (464)
++.+|+++||.|+. ++||+|||||+||+||||+|++++.+.... ..++.++|++||+|| |||+++++++|++.
T Consensus 224 ~l~~Y~~~rd~p~~-~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~~~~fl~eL~WR-Ef~~~~~~~~P~~~ 301 (484)
T 1owl_A 224 AIADYDPQRNFPAE-AGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWR-EFYQHALYHFPSLA 301 (484)
T ss_dssp GGGGHHHHTTCTTS-CCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHCGGGG
T ss_pred HHHHhccccCCCCc-cCCcCccHhHcCCCcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH-HHHHHHHHhCCccc
Confidence 99999999999998 999999999999999999999999875431 135688999999987 99999999999986
Q ss_pred cccc-----chHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHH----hhh-hcCCC
Q 012429 327 SLKG-----AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTT 396 (464)
Q Consensus 327 ~~~~-----~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vA----k~L-idWr~ 396 (464)
..+. .++|. .|++ .|++|++|+|||||||||||||++|||||||+||||| |+| |||+.
T Consensus 302 ~~~~~~~~~~l~w~--------~d~~----~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~ 369 (484)
T 1owl_A 302 DGPYRSLWQQFPWE--------NREA----LFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRR 369 (484)
T ss_dssp GSCCSTGGGGCCCC--------CCHH----HHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHH
T ss_pred cccCChhhhcCCCc--------CCHH----HHHHHHcCCCCChhHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCCCCcH
Confidence 5321 12332 2442 5999999999999999999999999999999999999 778 99999
Q ss_pred CHHHHHHHHHHHhhccCcccCCCCCcccceeeec-CCCCCCcccccccc
Q 012429 397 GPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALF 444 (464)
Q Consensus 397 G~~~a~~~~~~f~~~yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~ 444 (464)
|++ ||+++ |||||+|||+|||||+|| |+|++| |++||+.
T Consensus 370 g~~-------~F~~~-llD~d~a~n~g~wqw~ag~G~d~~p-fRifNp~ 409 (484)
T 1owl_A 370 GEQ-------FFMQH-LVDGDLAANNGGWQWSASSGMDPKP-LRIFNPA 409 (484)
T ss_dssp HHH-------HHHTT-CTTCCHHHHHHHHHHTTTCSSSCCC-CCCCCHH
T ss_pred HHH-------HHHHh-cccCCcccCHHHHHHhhCcCCCCCc-cceeCHH
Confidence 997 99998 999999999999999999 999999 9998874
No 5
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=2.5e-87 Score=709.13 Aligned_cols=388 Identities=18% Similarity=0.215 Sum_probs=309.0
Q ss_pred CCCcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc------------cchhhHHHHHHHHHHHHHHHH
Q 012429 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG------------AKARQLGFMLRGLRLLQRNIE 94 (464)
Q Consensus 27 ~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~------------~~~~r~~Fl~esL~~L~~~L~ 94 (464)
+++++||||||||||+||+||++|++ .+.+|+||||+||.++. .+.+|++||++||.+|+++|
T Consensus 3 ~~~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L- 77 (537)
T 3fy4_A 3 TGSGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSL- 77 (537)
T ss_dssp -CCEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHH-
T ss_pred CCCcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHH-
Confidence 45678999999999999999999986 46799999999998643 68899999999999999999
Q ss_pred hhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCcccc--c-CCC
Q 012429 95 ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS--E-KLE 170 (464)
Q Consensus 95 ~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~~--~-~~~ 170 (464)
+++|++|+|+.|++.++|++|+++++|++|+++.++...+++||++|++.|+ .||+++++++++|++|+.+. . +++
T Consensus 78 ~~~G~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~ 157 (537)
T 3fy4_A 78 KKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKP 157 (537)
T ss_dssp HHTTCCCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSC
T ss_pred HHcCCceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCC
Confidence 9999999999999999999999999999999998888888999999999996 89999999999999998643 2 458
Q ss_pred Cccchhh-HHHHhhCC--CcCCCCCCCCCCCCcCCCCCCCCChhHHHHHHHhcCCC---CCCCCCCCchHHHHHHHhccc
Q 012429 171 YSAKTLR-GKINKLLP--EYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAE---VPEIGWCESGEDAAMEVLKGS 244 (464)
Q Consensus 171 ~~~~t~~-~~~~k~~~--~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~gGe~~A~~~L~~~ 244 (464)
|++||++ ++|.+... .+..+.|...|. +... ..+.... +|++++++.. ......++|||++|+++|
T Consensus 158 y~vftpf~k~~~~~~~~~~p~~~~p~~~~~--~~~~--~~~~~~~-~p~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L--- 229 (537)
T 3fy4_A 158 PLSYQSFLKVAGEPSCAKSELVMSYSSLPP--IGDI--GNLGISE-VPSLEELGYKDDEQADWTPFRGGESEALKRL--- 229 (537)
T ss_dssp CSSHHHHHHHHCCCTTTTCCCCCCCSCCCC--CCCC--CSSCCCC-CCCTTTTTCCGGGSSCCCSCCCSHHHHHHHH---
T ss_pred CCccCHHHHHHHhhcCCcCCCCCccccCCC--cccc--ccccccc-CCcHHhcCCCcccccccCCCCccHHHHHHHH---
Confidence 9999954 56654321 111111110010 0000 0000000 1222222211 011234799999999999
Q ss_pred hhHHHhh--hccCCCCCCCCCCC--CCCCCcCchhhcCCccCHHHHHHHHHHHhhh---CCccHHHHHHHhhhhHHHHHH
Q 012429 245 KDGFLTK--RLKNYPTDRNNPLK--PRALSGLSPYLHFGQISAQRCALEARKARKL---CPEAIDTFLEELIVRRELADN 317 (464)
Q Consensus 245 ~~~Fl~~--~l~~Y~~~Rd~p~~--~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~---~~~~~~~fi~eL~wRrEf~~~ 317 (464)
++|+++ .+.+|++.||.|+. .++||+|||||+|||||||+|++++.+.... ..++.++|++||+|| |||++
T Consensus 230 -~~Fl~~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~f~~eL~WR-ef~~~ 307 (537)
T 3fy4_A 230 -TKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWR-EFFYT 307 (537)
T ss_dssp -HHHTCCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTTSCCCCTTTSHHHHHHHH-HHHHH
T ss_pred -HHHHhCchHHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHHhhcccccccHHHHHHHHHHH-HHHHH
Confidence 999987 69999999999972 3899999999999999999999999875421 345678999999998 99999
Q ss_pred HHHhCCCCCccccchHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHH----h-hh-
Q 012429 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----K-KI- 391 (464)
Q Consensus 318 ~~~~~p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vA----k-~L- 391 (464)
+++++|++...+..+.|...+. ..|+ ..|++|++|+|||||||||||||++|||||||+||||| | +|
T Consensus 308 ~~~~~p~~~~~~~~~~~~~~~w---~~~~----~~~~aW~~G~TG~P~vDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~ 380 (537)
T 3fy4_A 308 TAFGTPNFDKMKGNRICKQIPW---NEDH----AMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLF 380 (537)
T ss_dssp HHHTCTTTTSSTTCTTSCCCCC---BCCH----HHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTC
T ss_pred HHHHCcchhcccCChhhhcCCc---hhhh----HHHHHHHcCCCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhcC
Confidence 9999999876544333321111 1233 25999999999999999999999999999999999988 5 78
Q ss_pred hcCCCCHHHHHHHHHHHhhccCcccCCCCCcccceeeec-CCCCCCcccccccce
Q 012429 392 LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALFS 445 (464)
Q Consensus 392 idWr~G~~~a~~~~~~f~~~yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~~ 445 (464)
|||+.|++ ||+++ |||||+|+|+|||||+|| |.|++ ||++||+..
T Consensus 381 idWr~G~~-------~F~~~-liD~D~a~n~g~Wqw~ag~g~d~~-~fRifNP~~ 426 (537)
T 3fy4_A 381 IHWEQGRD-------VFERL-LIDSDWAINNGNWMWLSCSSFFYQ-FNRIYSPIS 426 (537)
T ss_dssp BCHHHHHH-------HHHHH-CTTCCHHHHHHHHHHHTTSSSCCC-TTCCCCTTT
T ss_pred CCcHHHHH-------HHHHH-ccccccccChHhhhhhcccCCCcc-cccccCHHH
Confidence 99999998 99998 999999999999999999 99988 999998753
No 6
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=7.5e-86 Score=699.35 Aligned_cols=392 Identities=15% Similarity=0.137 Sum_probs=305.4
Q ss_pred CCcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc---cchhhHHHHHHHHHHHHHHHHhhc---CCcE
Q 012429 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETF---QILF 101 (464)
Q Consensus 28 ~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~~---G~~L 101 (464)
++.+|||||||||++||+||.+|++.+. .+.+|+||||+||.++. .+.+|++||++||.+|+++| +++ |++|
T Consensus 3 ~~~~lvWFRrDLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~~~~G~~L 80 (538)
T 3tvs_A 3 RGANVIWFRHGLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQL-QAATDGRGRL 80 (538)
T ss_dssp SCEEEEEESSCCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHG-GGSCSSSSCC
T ss_pred CCcEEEEeCCCcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHHHHH-HHhhcCCCeE
Confidence 4578999999999999999999987432 33499999999998763 78999999999999999999 999 9999
Q ss_pred EEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCccccc---CCCCccchhh
Q 012429 102 FLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVASE---KLEYSAKTLR 177 (464)
Q Consensus 102 ~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~~~---~~~~~~~t~~ 177 (464)
+|+.|++.++|++|+++++|++|+++.++...+++||++|++.|+ .||+++++++++|++|+.+.+ +.+|.+||.+
T Consensus 81 ~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~f 160 (538)
T 3tvs_A 81 LVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMF 160 (538)
T ss_dssp EEEESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTTHHHHHTTTSCCCSHHHH
T ss_pred EEEeCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCceEEEecCCEEEChhhcccCCCCCCCcchHHH
Confidence 999999999999999999999999988887777899999999996 899999999999999986532 3467788744
Q ss_pred -HHHHhhCCCcCCCCCCCCCCC--CcCCCCCCCC--Chh--HHHHHHHhcCCCCC-----CCCCCCchHHHHHHHhccch
Q 012429 178 -GKINKLLPEYLIDYPMLEQPI--EKWTGTRQSI--DWD--SIIAAVLRKGAEVP-----EIGWCESGEDAAMEVLKGSK 245 (464)
Q Consensus 178 -~~~~k~~~~~~~~~p~~~p~~--~~~~~~~~~~--~~~--~~~~~~~~~~~~~~-----~~~~~~gGe~~A~~~L~~~~ 245 (464)
+++. .+.....|.+. |.. ......+... +.. ..+|++.+++.... ....++|||++|+++|
T Consensus 161 ~~~~~-~~~~~~~p~~~--p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~Ge~~A~~~L---- 233 (538)
T 3tvs_A 161 LHTVQ-IIGLPPRPTAD--ARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLL---- 233 (538)
T ss_dssp HHHHT-TTTCSSCCCCC--CCCCCCCCCCCCTTTTTTSCCBSSCCCTTTTSCCCCCSSCCCCCCCCCCHHHHHHHH----
T ss_pred HHHHH-hhCCCCCCCCC--ccccccccccCCcccccccccccCCCCHHHcCCCcccccccccCCCCCCHHHHHHHH----
Confidence 4443 33322222221 100 0000000000 000 00122222221111 1135799999999999
Q ss_pred hHHHhh----hccCCCCCCCCCCC-CCCCCcCchhhcCCccCHHHHHHHHHHHhhh----------CCccHHHHHHHhhh
Q 012429 246 DGFLTK----RLKNYPTDRNNPLK-PRALSGLSPYLHFGQISAQRCALEARKARKL----------CPEAIDTFLEELIV 310 (464)
Q Consensus 246 ~~Fl~~----~l~~Y~~~Rd~p~~-~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~----------~~~~~~~fi~eL~w 310 (464)
++|+++ .+.+|++.||.|.. .++||+|||||+||+||||+|++++.+.... ...++++|++||+|
T Consensus 234 ~~Fl~~~~~~~l~~y~~~r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~eL~W 313 (538)
T 3tvs_A 234 DERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIW 313 (538)
T ss_dssp HHHHHHHHHHHHSCCCCTTTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHHTCSSSCCCCCSSSCCTTTTTTHHHHHH
T ss_pred HHHHHhhhhhhHhhhcccccCcccccCCCcCCCHHHhCCCcCHHHHHHHHHHHHhhhcccccccccccchHHHHHHHHHH
Confidence 999943 38999999999862 2799999999999999999999999875432 11456899999999
Q ss_pred hHHHHHHHHHhCCCCCccccchHHHHhhhhhhcc-ChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHH-
Q 012429 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHAS-DKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA- 388 (464)
Q Consensus 311 RrEf~~~~~~~~p~~~~~~~~~~w~~~~l~~~~~-d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vA- 388 (464)
| |||+++++++|+|...+..+.|...... . |+ +.|++|++|+|||||||||||||++|||||||+|||||
T Consensus 314 R-ef~~~~~~~~p~~~~~~~~~~~~~~~w~---~~~~----~~~~aW~~G~TG~P~VDA~MrqL~~tG~mHnr~Rm~vAs 385 (538)
T 3tvs_A 314 R-EYFYTMSVNNPNYDRMEGNDICLSIPWA---KPNE----NLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVAT 385 (538)
T ss_dssp H-HHHHHHHHHSSCTTSSSSCSSCCCCCCC---CCCS----SHHHHHHTTCSSCHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred H-HHHHHHHHhCcchhhccCChhhhcCCcc---ccCH----HHHHHHHhCCCCCHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 8 9999999999998765433222111000 1 22 25999999999999999999999999999999999987
Q ss_pred ---h-hh-hcCCCCHHHHHHHHHHHhhccCcccCCCCCcccceeeec-CCC-CCCcccccccc
Q 012429 389 ---K-KI-LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVH-DQVSLYHFALF 444 (464)
Q Consensus 389 ---k-~L-idWr~G~~~a~~~~~~f~~~yllD~d~a~n~g~wqw~ag-G~~-~r~~~~~~~~~ 444 (464)
| +| |||+.|++ ||+++ |||||+|+|+|||||+|| |+| ++|||++||+.
T Consensus 386 fl~k~~L~idWr~G~~-------~F~~~-llD~D~a~n~g~Wqw~ag~g~Dd~~pyfRifNP~ 440 (538)
T 3tvs_A 386 FLTRGGLWQSWEHGLQ-------HFLKY-LLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPV 440 (538)
T ss_dssp HHTTTTTCCCHHHHHH-------HHHHH-CTTCCHHHHHHHHHHHSCCCSSCCCTHHHHCSTT
T ss_pred HHHHhhhCCCchHHHH-------HHHHH-cccCchhhchhhhhhhhcCCCcCCCCceeeeCHH
Confidence 6 78 99999997 99998 999999999999999999 995 69999998874
No 7
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=2.7e-85 Score=678.50 Aligned_cols=362 Identities=22% Similarity=0.265 Sum_probs=302.0
Q ss_pred cEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcc
Q 012429 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAE 109 (464)
Q Consensus 30 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~ 109 (464)
.+|+|||||||++||+||.+|++ .+ +|+||||+||.+...+.+|+.||++||++|+++| +++|++|+++.|++.
T Consensus 3 ~~l~WfrrDlRl~Dn~aL~~A~~----~~-~v~~vfi~d~~~~~~~~~r~~fl~~sL~~l~~~L-~~~g~~l~~~~g~~~ 76 (420)
T 2j07_A 3 PLLVWHRGDLRLHDHPALLEALA----RG-PVVGLVVLDPNNLKTTPRRRAWFLENVRALREAY-RARGGALWVLEGLPW 76 (420)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHT----TS-CEEEEEEECHHHHSSCHHHHHHHHHHHHHHHHHH-HHTTCCEEEEESCHH
T ss_pred eEEEEeCCCCCccccHHHHHHHh----CC-CEEEEEEECCccccCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEEeCCHH
Confidence 58999999999999999999885 34 9999999999765338999999999999999999 999999999999999
Q ss_pred chHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEeeCCeeEeCcccccCCCCccchhhH-HHHhhCCCcC
Q 012429 110 DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG-KINKLLPEYL 188 (464)
Q Consensus 110 ~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~~~~l~~~~~~~~~~~~~~~t~~~-~~~k~~~~~~ 188 (464)
++|.+|+++++|+.|+++.++...+++||++|++.| ||+++++++++|++++. +++|.+||++. ++. .+.
T Consensus 77 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l--~i~~~~~~~~~l~~~~~---~~~~~~~t~f~k~~~-~~~--- 147 (420)
T 2j07_A 77 EKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL--PVPLHLLPAPHLLPPDL---PRAYRVYTPFSRLYR-GAA--- 147 (420)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC--SSCEEEECCCCSSCTTC---SSCCSSHHHHHTTCC-CCC---
T ss_pred HHHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc--CCeEEEeCCCEEEccCC---CCccccccHHHHHHh-hcc---
Confidence 999999999999999999888888899999999999 99999999999999986 78899998654 443 221
Q ss_pred CCCCCCCCCCCcCCCCCCCCChhHHHHHHHhcCCCCCCCCCCCchHHHHHHHhccchhHHHhhhccCCCCCCCCCCCCCC
Q 012429 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA 268 (464)
Q Consensus 189 ~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~~ 268 (464)
.|.+. |...+. + ++...+ + . ... ....++|||++|+++| ++|+++++.+|+++||.|+. ++
T Consensus 148 ~p~~~--p~~~~~---p--~~~~~l-~---~--~~~-~~~~~~~Ge~~A~~~L----~~Fl~~~l~~Y~~~rd~p~~-~~ 208 (420)
T 2j07_A 148 PPLPP--PEALPK---G--PEEGEI-P---R--EDP-GLPLPEPGEEAALAGL----RAFLEAKLPRYAEERDRLDG-EG 208 (420)
T ss_dssp CCCCC--CSSCCC---C--CCCCCC-C---C--CCC-SSCCCCCSHHHHHHHH----HHHHHHTGGGHHHHTTCTTC-TT
T ss_pred CCCCC--ccccCC---C--CccccC-C---C--ccc-ccccCCCcHHHHHHHH----HHHHHHHHhhhhhccCCCCc-cC
Confidence 22221 111010 0 110001 1 1 111 1235799999999999 99999999999999999998 99
Q ss_pred CCcCchhhcCCccCHHHHHHHHHHHhhhCCccHHHHHHHhhhhHHHHHHHHHhCCCCCccccchHHHHhhhhhhccChhh
Q 012429 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348 (464)
Q Consensus 269 tS~LSPyL~~G~LS~R~v~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~~~~w~~~~l~~~~~d~~~ 348 (464)
||+|||||+||+||||+|++++.+.. .++.++|++||+|| ||++++++++|++....... +.. .+ .+..|++
T Consensus 209 tS~LSpyL~~G~lSpr~v~~~~~~~~---~~~~~~f~~eL~WR-Ef~~~~~~~~p~~~~~~~~~-~~~-~l-~w~~d~~- 280 (420)
T 2j07_A 209 GSRLSPYFALGVLSPRLAAWEAERRG---GEGARKWVAELLWR-DFSYHLLYHFPWMAERPLDP-RFQ-AF-PWQEDEA- 280 (420)
T ss_dssp SCCCHHHHHTTSSCHHHHHHHHHHHC---SHHHHHHHHHHHHH-HHHHHHHHHCGGGGTSCSSG-GGT-TC-CCCCCHH-
T ss_pred CCCcchhhcCCccCHHHHHHHHHHHh---ccCHHHHHHHHHHH-HHHHHHHHhCCcccccccch-hhh-cC-CcccCHH-
Confidence 99999999999999999999997653 56788999999987 99999999999985432111 111 01 1113442
Q ss_pred hhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHH----hhh-hcCCCCHHHHHHHHHHHhhccCcccCCCCCcc
Q 012429 349 HIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYV 423 (464)
Q Consensus 349 ~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vA----k~L-idWr~G~~~a~~~~~~f~~~yllD~d~a~n~g 423 (464)
.+++|++|+|||||||||||||++|||||||+||||| |+| |||+.|++ ||+++ |||||+|||+|
T Consensus 281 ---~~~~w~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~g~~-------~F~~~-llD~d~a~n~g 349 (420)
T 2j07_A 281 ---LFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEE-------AFRHL-LLDGDRAVNLQ 349 (420)
T ss_dssp ---HHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHH-------HHHHH-CTTCCHHHHHH
T ss_pred ---HHHHHHcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChHHHH-------HHHHH-hhcCCccccHH
Confidence 5999999999999999999999999999999999999 788 99999997 99999 99999999999
Q ss_pred cceeeec-CCCCCCcccccccc
Q 012429 424 GCMWSIC-GVHDQVSLYHFALF 444 (464)
Q Consensus 424 ~wqw~ag-G~~~r~~~~~~~~~ 444 (464)
||||+|| |+|++|||++||+.
T Consensus 350 ~wqw~aG~g~d~~pyfR~fNp~ 371 (420)
T 2j07_A 350 GWQWAGGLGVDAAPYFRVFNPV 371 (420)
T ss_dssp HHHHHTTSSGGGCCTTCCCCHH
T ss_pred HHHHHHccCCCCCCCceeeCHH
Confidence 9999999 99999999999874
No 8
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.9e-85 Score=680.30 Aligned_cols=348 Identities=19% Similarity=0.216 Sum_probs=294.5
Q ss_pred EEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc----cchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC
Q 012429 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AKARQLGFMLRGLRLLQRNIEETFQILFFLFQG 106 (464)
Q Consensus 31 ~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G 106 (464)
+|||||||||++||+||.+|++ .+.||+||||+||.++. .+.+|+.||++||++|+++| +++|++|+|+.|
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~~L~v~~g 77 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALS----ECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDEL-RKKGSRLNVFFG 77 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHH----HSSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHH-HTTTCCCEEEES
T ss_pred EEEEeCCCCccchhHHHHHHHh----cCCCEEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHHHHH-HHcCCeEEEEEC
Confidence 7999999999999999999987 36799999999998643 78999999999999999999 999999999999
Q ss_pred CccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCcccccCCCCccch-hhHHHHhh-
Q 012429 107 EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVASEKLEYSAKT-LRGKINKL- 183 (464)
Q Consensus 107 ~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~~~~~~~~~~t-~~~~~~k~- 183 (464)
++.++|++|++ +|+.|+++.++...+++||++|++.|+ .||+++++++++|++++.+ +|++|| |+++|.+.
T Consensus 78 ~~~~~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~----~y~vftpf~~~~~~~~ 151 (440)
T 2e0i_A 78 EAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKSLF----HHRNFTSFYNEVSKVK 151 (440)
T ss_dssp CHHHHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGC----CCSSHHHHHHHHTTSC
T ss_pred CHHHHHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEEecCCEEEccccc----CcccCcHHHHHHHHhc
Confidence 99999999999 999999998888888999999999996 7999999999999999876 689998 55677664
Q ss_pred CCCcCCCCCCCCCCCCcCCCCCCCCChhHHHHHHHhcCCCCCCCCCCCchHHHHHHHhccchhHHHhhhccCCCCCCCCC
Q 012429 184 LPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263 (464)
Q Consensus 184 ~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p 263 (464)
+..+..++|. |...|. +. .+.++ |. . ...++|||++|+++| + |+++++.+| ++||.|
T Consensus 152 ~~~p~~~~~~--~~~~~~---p~--~~~~l-p~------~---~~~~~~Ge~~A~~~L----~-Fl~~~l~~Y-~~rd~p 208 (440)
T 2e0i_A 152 VREPETMEGS--FDVTDS---SM--NVDFL-LT------F---KKIESPLFRGGRREG----L-YLLHRNVDF-RRRDYP 208 (440)
T ss_dssp CCCCCCCCCC--BCCCSS---SB--CGGGG-GG------T---CCCCCTTCCCSHHHH----H-HHHTCCCCG-GGTTCT
T ss_pred ccccccCCCC--cccCCC---cc--hhhhC-Cc------c---ccCCCCCHHHHHHHH----H-HHHhhhhcC-CcCCCc
Confidence 2210111111 111111 11 11111 11 1 124699999999999 9 999999999 999999
Q ss_pred CCCCCCCcCchhhcCCccCHHHHHHHHHHHhhhCCccHHHHHHHhhhhHHHHHHHHHhCCCCCcccc-----chHHHHhh
Q 012429 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG-----AWEWARKS 338 (464)
Q Consensus 264 ~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~-----~~~w~~~~ 338 (464)
+. ++||+|||||+||+||||+|++++ ++.++|++||+|| ||++++++++|++...+. ..+|.
T Consensus 209 ~~-~~tS~LSPyL~~G~lSpr~v~~~~--------~~~~~fl~eL~WR-Ef~~~~~~~~P~~~~~~~~~~~~~l~W~--- 275 (440)
T 2e0i_A 209 AE-NNNYRLSPHLKFGTISMREAYYTQ--------KGKEEFVRELYWR-DFFTLLAYYNPHVFGHCYRREYDNISWE--- 275 (440)
T ss_dssp TT-TCCCCCHHHHHTTSSCHHHHHHHS--------TTCHHHHHHHHHH-HHHHHHHHHCGGGTTSCSSGGGGGCCCC---
T ss_pred cc-cCCCCccHhHhCCCCCHHHHHHHh--------cCHHHHHHHHHHH-HHHHHHHHhCCCccccccchhhhcCCcc---
Confidence 87 999999999999999999999987 3578999999987 999999999999865321 12343
Q ss_pred hhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHH----hhh-hcCCCCHHHHHHHHHHHhhccC
Q 012429 339 LKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGPEEALAIAIYLNDKYE 413 (464)
Q Consensus 339 l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vA----k~L-idWr~G~~~a~~~~~~f~~~yl 413 (464)
.|++ .+++|++|+|||||||||||||++|||||||+||||| |+| |||+.|++ ||+++ |
T Consensus 276 -----~d~~----~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~-------~F~~~-l 338 (440)
T 2e0i_A 276 -----NNES----YFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDWRWGER-------YFATK-L 338 (440)
T ss_dssp -----CCHH----HHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHH-------HHHHH-C
T ss_pred -----cchH----HHHHHHhCCCCCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHhCCCccHHHH-------HHHHH-c
Confidence 2443 4999999999999999999999999999999999999 788 99999998 99998 9
Q ss_pred cccCCCCCcccceeeec-CCCCCCcccccccc
Q 012429 414 IDGRDPNGYVGCMWSIC-GVHDQVSLYHFALF 444 (464)
Q Consensus 414 lD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~ 444 (464)
||||+|||+|||||+|| |+|+ ||++||+.
T Consensus 339 lD~d~a~n~g~wqw~aG~g~d~--~~RifNp~ 368 (440)
T 2e0i_A 339 VDYDPAINNGNWQWIASTGVDY--MFRVFNPW 368 (440)
T ss_dssp TTCCHHHHHHHHHHHTTSSSCC--SCCCCCHH
T ss_pred ccCCccccHHHHHHHhCcCCCC--CCCccCHH
Confidence 99999999999999999 8887 99999874
No 9
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=1.6e-84 Score=688.67 Aligned_cols=376 Identities=18% Similarity=0.189 Sum_probs=298.5
Q ss_pred CCCcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc---cchhhHHHHHHHHHHHHHHHHhhcCCcEEE
Q 012429 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFL 103 (464)
Q Consensus 27 ~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v 103 (464)
.++.+|||||||||++||+||.+|++ . .+|+||||+||.... .+..+..||++||++|+++| +++|++|+|
T Consensus 10 ~~~~~l~WfrrDLRl~DN~aL~~A~~----~-~~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L-~~~G~~L~v 83 (509)
T 1u3d_A 10 SGGCSIVWFRRDLRVEDNPALAAAVR----A-GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL-RSLGTCLIT 83 (509)
T ss_dssp ---CEEEEESSCCCSTTCHHHHHHHH----H-SCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCCcEEEEECCCCccchhHHHHHHHh----C-CCEEEEEEECchhcccCCcchHHHHHHHHHHHHHHHHH-HHCCCeEEE
Confidence 45678999999999999999999987 2 389999999998542 35556669999999999999 999999999
Q ss_pred Ee-CCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCccccc--CCCCccchh-hH
Q 012429 104 FQ-GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVASE--KLEYSAKTL-RG 178 (464)
Q Consensus 104 ~~-G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~~~--~~~~~~~t~-~~ 178 (464)
+. |++.++|.+|+++++|+.|+++.++...+++||++|++.|+ .||+++++++++|++|+.+.+ +++|.+||+ ++
T Consensus 84 ~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftpf~r 163 (509)
T 1u3d_A 84 KRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWE 163 (509)
T ss_dssp EECSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHH
T ss_pred EeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCCCchhHHHHHH
Confidence 98 69999999999999999999986666667899999999996 799999999999999986543 567888874 45
Q ss_pred HHHhhCCCcCCCCCCCCCCCCcCCCCCCCCChhHHHHHHHhcCCCC------CCC--CCCCchHHHHHHHhccchhHHHh
Q 012429 179 KINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEV------PEI--GWCESGEDAAMEVLKGSKDGFLT 250 (464)
Q Consensus 179 ~~~k~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~gGe~~A~~~L~~~~~~Fl~ 250 (464)
++.+.......+.+. |...+.. ... .+++..++... ... ..|+|||++|+++| ++|++
T Consensus 164 ~~~~~~~~~~~~~~~--p~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl~ 229 (509)
T 1u3d_A 164 RCLSMPYDPESPLLP--PKKIISG------DVS--KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKAL----TTFIN 229 (509)
T ss_dssp HHHTCSSCCCCCCCC--CSCCCBT------TGG--GSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHH----HHHHT
T ss_pred HHHhccCCCCCCCCC--ccccCcc------ccC--CCChhHhCCCcccccchhhhccccCCCcHHHHHHHH----HHHHH
Confidence 665532111111111 1000000 000 00000111000 000 13799999999999 99999
Q ss_pred hhccCCCCCCCCCCCCCCCCcCchhhcCCccCHHHHHHHHHHHh-----hh---CCccHHHHHHHhhhhHHHHHHHHHhC
Q 012429 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR-----KL---CPEAIDTFLEELIVRRELADNFCFYQ 322 (464)
Q Consensus 251 ~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~-----~~---~~~~~~~fi~eL~wRrEf~~~~~~~~ 322 (464)
+++.+|+++||.|+. ++||+|||||+||+||||+|++++.+.. .. ..+++++|++||+|| ||++++++++
T Consensus 230 ~~l~~Y~~~Rd~p~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~~s~~~fl~eL~WR-Ef~~~~~~~~ 307 (509)
T 1u3d_A 230 GPLLEYSKNRRKADS-ATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLR-EYSRYISFNH 307 (509)
T ss_dssp TGGGGTTTTTTCSSS-TTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHHHHSS
T ss_pred HHHHhhhhccCCCCC-CCCCCCChhhccCCCCHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHH-HHHHHHHHhC
Confidence 999999999999998 8999999999999999999999987642 11 234678999999997 9999999999
Q ss_pred CCCCccc-----cchHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHHh----hh-h
Q 012429 323 PNYDSLK-----GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK----KI-L 392 (464)
Q Consensus 323 p~~~~~~-----~~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vAk----~L-i 392 (464)
|++...+ ...+|. .|+ ..|++|++|+|||||||||||||++|||||||+|||||+ +| |
T Consensus 308 p~~~~~~~~~~~~~lpW~--------~d~----~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~i 375 (509)
T 1u3d_A 308 PYSHERPLLGHLKFFPWA--------VDE----NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQL 375 (509)
T ss_dssp TTTTTSCSCCTTTTCCCC--------CCH----HHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCC
T ss_pred ccccccchhhhhccCCCc--------CCh----HHHHHHHcCCCCCHhHHHHHHHHHHhCCccHHHHHHHHHHHHHccCC
Confidence 9854311 123464 233 259999999999999999999999999999999999994 67 9
Q ss_pred cCCCCHHHHHHHHHHHhhccCcccCCCCCcccceeeec-CCCCCCcccccccc
Q 012429 393 EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALF 444 (464)
Q Consensus 393 dWr~G~~~a~~~~~~f~~~yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~ 444 (464)
|||.|++ ||+++ |||||+|||+|||||+|| |+|++|||++||+.
T Consensus 376 dWr~G~~-------~F~~~-liD~D~a~n~g~wqw~ag~g~d~~py~RifNP~ 420 (509)
T 1u3d_A 376 PWRWGMK-------YFWDT-LLDADLESDALGWQYITGTLPDSREFDRIDNPQ 420 (509)
T ss_dssp CHHHHHH-------HHHHH-CTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHH
T ss_pred CchHHHH-------HHHHH-hccCCcccchHHHHHHhcCCCCCCccccccCHH
Confidence 9999998 99998 999999999999999999 99999999999874
No 10
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=8e-84 Score=680.58 Aligned_cols=379 Identities=16% Similarity=0.174 Sum_probs=305.6
Q ss_pred CcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcc--------ccchhhHHHHHHHHHHHHHHHHhhcCCc
Q 012429 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL--------GAKARQLGFMLRGLRLLQRNIEETFQIL 100 (464)
Q Consensus 29 ~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~--------~~~~~r~~Fl~esL~~L~~~L~~~~G~~ 100 (464)
+++|||||||||++||+||.+|++ .+.+|+||||+||.++ ..+.+|+.||++||++|+++| +++|++
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~~ 80 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESL-QKVGNK 80 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHH-HHTTCC
T ss_pred CcEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHH-HHCCCc
Confidence 468999999999999999999987 4669999999999753 368999999999999999999 999999
Q ss_pred EEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCccccc--CCCCccch-h
Q 012429 101 FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVASE--KLEYSAKT-L 176 (464)
Q Consensus 101 L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~~~~--~~~~~~~t-~ 176 (464)
|+|+.|++.++|.+|+++++|+.|+++.++...+++||++|++.|+ .||+++++++++|++++.+.+ +++|.+|| |
T Consensus 81 L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~F 160 (489)
T 1np7_A 81 LLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKF 160 (489)
T ss_dssp EEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHHH
T ss_pred EEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCeEEEecCCeeeCccccccCCCCCCchHHHH
Confidence 9999999999999999999999999998888888999999999996 799999999999999986543 67899998 5
Q ss_pred hHHHH-hhCCCcCCCCCCCCCCCCcCCCCCCCCChhHHHHHHHhcCC---CCCCCCCCCchHHHHHHHhccchhHHH--h
Q 012429 177 RGKIN-KLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA---EVPEIGWCESGEDAAMEVLKGSKDGFL--T 250 (464)
Q Consensus 177 ~~~~~-k~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~gGe~~A~~~L~~~~~~Fl--~ 250 (464)
++++. +... ...|.|. |...+.. +..+.... +|.+..++. .......++|||++|+++| ++|+ +
T Consensus 161 ~~~~~~~~~~-~~~p~~~--p~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl~~~ 230 (489)
T 1np7_A 161 RKDIEKKKIS-IRPCFFA--PSQLLPS--PNIKLELT-APPPEFFPQINFDHRSVLAFQGGETAGLARL----QDYFWHG 230 (489)
T ss_dssp HHHHHTTTCC-CCCCCCC--CSCCCCC--CCCCCCCC-CCCGGGSCCCCCCTTSSCCCCCSHHHHHHHH----HHHHTTS
T ss_pred HHHHHHhccC-CCCCCCC--cccccCc--cccccccC-CCCHhhcCCCCcCccccCCCCCcHHHHHHHH----HHHHhcc
Confidence 56776 5432 1122222 1111000 00000000 122222221 1112235899999999999 9999 5
Q ss_pred hhccCCCCCCCCCCCCCCCCcCchhhcCCccCHHHHHHHHHHHhhh--CCccHHHHHHHhhhhHHHHHHHHHhCCCCCcc
Q 012429 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL--CPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328 (464)
Q Consensus 251 ~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~--~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~~ 328 (464)
+++.+|+++||.|...++||+|||||+||+||||+|++++.+.... ..++.+.|++||+|| |||+++++++|++...
T Consensus 231 ~~l~~Y~~~Rd~~~~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~f~~eL~WR-ef~~~~~~~~p~~~~~ 309 (489)
T 1np7_A 231 DRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTHWLIFELLWR-DFFRFVAQKYGNKLFN 309 (489)
T ss_dssp CCGGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-HHHHHHHHHHGGGGGS
T ss_pred hhHhhhhhcccCCccccCCcCcChhhcCCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHHH-HHHHHHHHHCcchhhh
Confidence 7899999999987533899999999999999999999999874332 345667899999998 9999999888887532
Q ss_pred cc-----chHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHHh----hh-hcCCCCH
Q 012429 329 KG-----AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK----KI-LEWTTGP 398 (464)
Q Consensus 329 ~~-----~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vAk----~L-idWr~G~ 398 (464)
.. .++|. .|++ .|++|++|+|||||||||||||++|||||||+|||||+ +| |||+.|+
T Consensus 310 ~~~~~~~~~~W~--------~d~~----~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~ 377 (489)
T 1np7_A 310 RGGLLNKNFPWQ--------EDQV----RFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGA 377 (489)
T ss_dssp TTTTTTCCCCCB--------CCHH----HHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred hcCcccccCCCc--------cCHH----HHHHHHcCCCCChhHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCChhHH
Confidence 21 12453 2332 59999999999999999999999999999999999984 67 9999999
Q ss_pred HHHHHHHHHHhhccCcccCCCCCcccceeeec-CCCCCCcccccccc
Q 012429 399 EEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALF 444 (464)
Q Consensus 399 ~~a~~~~~~f~~~yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~ 444 (464)
+ ||+++ |||||+++|+|||||+|| |.|++ +|++||+-
T Consensus 378 ~-------~F~~~-LiD~D~a~N~g~wqw~ag~g~d~~-~~RifNp~ 415 (489)
T 1np7_A 378 E-------WFESC-LIDYDVCSNWGNWNYTAGIGNDAR-DFRYFNIP 415 (489)
T ss_dssp H-------HHHHH-CTTCCHHHHHHHHHHHHTSSCCTT-SCCCCCHH
T ss_pred H-------HHHHH-hcccChhcChHhhhhhhccCCCcc-cccccCHH
Confidence 8 99999 999999999999999999 99998 79888864
No 11
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=1.4e-83 Score=685.23 Aligned_cols=390 Identities=16% Similarity=0.192 Sum_probs=309.5
Q ss_pred cEEEEEcCCCCccCCHHHHHHHHHhhh--CCCCEEEEEEecCCccc---cchhhHHHHHHHHHHHHHHHHhhcCCcEEEE
Q 012429 30 PVVYWMFRDQRVRDNWALIHAVDQANK--NNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFLF 104 (464)
Q Consensus 30 ~~l~WfrrDLRl~DN~aL~~A~~~a~~--~~~~vl~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~ 104 (464)
.+|||||||||++||+||.+|++.+.. .+.||+||||+||.++. .+.+|+.||++||++|+++| +++|++|+|+
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~~L~v~ 108 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQL-RKLNSRLFVV 108 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHH-HHTTCCCEEE
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEE
Confidence 459999999999999999999886544 35579999999998753 78999999999999999999 9999999999
Q ss_pred eCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCcc-c--ccCCCCccchh-hHH
Q 012429 105 QGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWV-A--SEKLEYSAKTL-RGK 179 (464)
Q Consensus 105 ~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~~-~--~~~~~~~~~t~-~~~ 179 (464)
.|++.++|.+|+++++|++|+++.++...++.||+.|++.|+ .||+++++++++|++++. + ..++.|.+||+ +++
T Consensus 109 ~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~~v~~~~~g~~~~vft~F~~~ 188 (543)
T 2wq7_A 109 RGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGI 188 (543)
T ss_dssp ESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSHHHHHHH
T ss_pred eCCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEEEEecCCEEECccccccccCCCCCccHHHHHHH
Confidence 999999999999999999999987777777899999999996 799999999999999986 3 23677889985 455
Q ss_pred HHhhCCCcCCCCCCCCCCCCcCCCCCCCCChh------HHHHHHHhcCCC--CCCCCCCCchHHHHHHHhccchhHHHhh
Q 012429 180 INKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD------SIIAAVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDGFLTK 251 (464)
Q Consensus 180 ~~k~~~~~~~~~p~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~gGe~~A~~~L~~~~~~Fl~~ 251 (464)
+.+ +.... |.+. |...+....+...+.. ..+|.+..++.. ......|+|||++|+++| ++|+++
T Consensus 189 ~~~-~~~~~-p~~~--p~~~~~~~~p~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl~~ 260 (543)
T 2wq7_A 189 VEQ-LKVPK-VLGV--PEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRM----EESLKD 260 (543)
T ss_dssp HTT-SCCCC-CCCC--CCCCSSCCCCCCCHHHHHCTTTTSCCCHHHHCSCGGGCCCCCSCCSHHHHHHHH----HHHHTC
T ss_pred HHH-ccCCC-CCCc--chhccccccccccccccccccccCCCCHHHcCCCccccccCCCCCCHHHHHHHH----HHHHhC
Confidence 543 32111 2221 1000000000000000 001122222211 111134799999999999 999999
Q ss_pred h--ccCCCCCCCCCCC-CCCCCcCchhhcCCccCHHHHHHHHHHHhhh---CCccHHHHHHHhhhhHHHHHHHHHhCCCC
Q 012429 252 R--LKNYPTDRNNPLK-PRALSGLSPYLHFGQISAQRCALEARKARKL---CPEAIDTFLEELIVRRELADNFCFYQPNY 325 (464)
Q Consensus 252 ~--l~~Y~~~Rd~p~~-~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~---~~~~~~~fi~eL~wRrEf~~~~~~~~p~~ 325 (464)
+ +.+|+++||.|+. .++||+|||||+||+||||+|++++.+.... ..++.++|++||+|| |||+++++++|++
T Consensus 261 ~~~l~~Y~~~Rd~p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~f~~eL~WR-Ef~~~~~~~~P~~ 339 (543)
T 2wq7_A 261 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWR-EFYYTVAAAEPNF 339 (543)
T ss_dssp HHHHHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHHHCSSCCCTTTSHHHHHHHH-HHHHHHHHTCTTT
T ss_pred ChhhhhhcccccCccccccCCCCcCHhHhCCCCCHHHHHHHHHHHHhccccccccHHHHHHHHHHH-HHHHHHHHhCCcc
Confidence 9 9999999999973 3899999999999999999999999875432 346778999999998 9999999999999
Q ss_pred CccccchHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHH----h-hh-hcCCCCHH
Q 012429 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----K-KI-LEWTTGPE 399 (464)
Q Consensus 326 ~~~~~~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vA----k-~L-idWr~G~~ 399 (464)
...+..+.|...... .++ ..|++|++|+|||||||||||||++|||||||+||||| | +| |||+.|++
T Consensus 340 ~~~~~~~~~~~~~w~---~~~----~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vASFL~kg~L~idWr~G~~ 412 (543)
T 2wq7_A 340 DRMLGNVYCMQIPWQ---EHP----DHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQR 412 (543)
T ss_dssp TSSTTCTTCCCCCCC---CCH----HHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCCCHHHHHH
T ss_pred ccccCChHhhcCCCc---cCH----HHHHHHHcCCCCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhCCCCchHHH
Confidence 876544433221111 122 24999999999999999999999999999999999999 6 78 99999997
Q ss_pred HHHHHHHHHhhccCcccCCCCCcccceeeec-CCCCCCcccccccce
Q 012429 400 EALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALFS 445 (464)
Q Consensus 400 ~a~~~~~~f~~~yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~~ 445 (464)
||+++ |||||+|||+|||||+|| |.|++ ||++||+-.
T Consensus 413 -------~F~~~-LiD~D~a~n~g~Wqw~aG~g~D~~-~~RifNP~~ 450 (543)
T 2wq7_A 413 -------VFEQL-LLDQDWALNAGNWMWLSASAFFHQ-YFRVYSPVA 450 (543)
T ss_dssp -------HHHHH-CTTCCHHHHHHHHHHHTTSSSCCC-TTCCCCTTT
T ss_pred -------HHHHH-hccCCcccCHHHHHHHhcCCCcCc-cccccCHHH
Confidence 99998 999999999999999999 88877 999988754
No 12
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=2.5e-83 Score=680.73 Aligned_cols=384 Identities=19% Similarity=0.193 Sum_probs=305.1
Q ss_pred CCcEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcc---------ccchhhHHHHHHHHHHHHHHHHhhcC
Q 012429 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---------GAKARQLGFMLRGLRLLQRNIEETFQ 98 (464)
Q Consensus 28 ~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---------~~~~~r~~Fl~esL~~L~~~L~~~~G 98 (464)
++++|+|||||||++||+||.+|++ .+.+|+||||+||.++ ..+.+|+.||++||++|+++| +++|
T Consensus 39 ~~~~l~WfrrDLRl~DN~AL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G 113 (525)
T 2j4d_A 39 KGVTILWFRNDLRVLDNDALYKAWS----SSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNL-MKRG 113 (525)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHH----TCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred CCeEEEEeCCCcCcchhHHHHHHHh----cCCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHH-HHcC
Confidence 4578999999999999999999987 4568999999999754 358899999999999999999 9999
Q ss_pred CcEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhc-CC--CeEEEeeCCeeEeCccccc--CCCCcc
Q 012429 99 ILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DS--VTIHEVDAHNVVPVWVASE--KLEYSA 173 (464)
Q Consensus 99 ~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~-~~--v~~~~~~~~~l~~~~~~~~--~~~~~~ 173 (464)
++|+|+.|++.++|.+|+++++|+.|+++.++...++++|++|++.|+ .| |+++++++++|++|+.+.. ++.|.+
T Consensus 114 ~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~~g~~~~v 193 (525)
T 2j4d_A 114 LNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDV 193 (525)
T ss_dssp CCCEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGGGCCSS
T ss_pred CeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCCceEEEEecCCEEEccccccccCCCCccc
Confidence 999999999999999999999999999998888888999999999996 78 8999999999999986543 567888
Q ss_pred ch-hhHHHHhhCCCcCCCCCCCCCCCCcCCCCCCCCChhHHHHHHHhc--CCC-CCCCCCCCchHHHHHHHhccchhHHH
Q 012429 174 KT-LRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRK--GAE-VPEIGWCESGEDAAMEVLKGSKDGFL 249 (464)
Q Consensus 174 ~t-~~~~~~k~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~gGe~~A~~~L~~~~~~Fl 249 (464)
|| |++++.+.+.. ..|+|. |...+.. +..++...+ ++++++ ... ......++|||++|+++| ++|+
T Consensus 194 ft~F~r~~~~~~~~-~~p~~~--p~~~~~~--~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl 263 (525)
T 2j4d_A 194 YTQFRKSVEAKCSI-RSSTRI--PLSLGPT--PSVDDWGDV-PTLEKLGVEPQEVTRGMRFVGGESAGVGRV----FEYF 263 (525)
T ss_dssp HHHHHHHHHHHCCC-CCCCCB--CSCCCCC--CCCSCCCCC-CCTTTTTCCCCCCCSEEEECCSHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHhcCC-CCCCCC--ccccCCc--cccccccCC-CCHHHcCCCcccccccCCCCCcHHHHHHHH----HHHH
Confidence 87 66788876531 223222 1111110 000000000 112122 110 111124799999999999 9999
Q ss_pred -h-hhccCCCCCCCCC-CCCCCCCcCchhhcCCccCHHHHHHHHHHHhhh--CCccHHHHHHHhhhhHHHHHHHHHhC-C
Q 012429 250 -T-KRLKNYPTDRNNP-LKPRALSGLSPYLHFGQISAQRCALEARKARKL--CPEAIDTFLEELIVRRELADNFCFYQ-P 323 (464)
Q Consensus 250 -~-~~l~~Y~~~Rd~p-~~~~~tS~LSPyL~~G~LS~R~v~~~~~~~~~~--~~~~~~~fi~eL~wRrEf~~~~~~~~-p 323 (464)
+ +++.+|+++||.| +. ++||+|||||+||+||||+|++++.++... ..++.+.|++||+|| |||+++++++ |
T Consensus 264 ~~~~~l~~Y~~~Rd~~~~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~f~~EL~WR-Ef~~~~~~~~~~ 341 (525)
T 2j4d_A 264 WKKDLLKVYKETRNGMLGP-DYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWR-DYFRFLSIKCGN 341 (525)
T ss_dssp TTSCCGGGHHHHTTCCSSS-TTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-HHHHHHHHHHGG
T ss_pred hhCchHhhhcccCCCcccc-ccCCCcChhhcCCcCCHHHHHHHHHHHhhcccccccHHHHHHHHHHH-HHHHHHHHHcCc
Confidence 6 5799999999987 56 899999999999999999999999875432 345567899999997 9999887644 6
Q ss_pred CCCccccchHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHHHHh----hh-hcCCCCH
Q 012429 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK----KI-LEWTTGP 398 (464)
Q Consensus 324 ~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~vAk----~L-idWr~G~ 398 (464)
.+....+...|... ...+. +.+++|++|+|||||||||||||++|||||||+|||||+ +| |||+.|+
T Consensus 342 ~~~~~~~~~~~~~~----w~~~~----~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~ 413 (525)
T 2j4d_A 342 SLFHLGGPRNVQGK----WSQDQ----KLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGA 413 (525)
T ss_dssp GGTSTTTTTTCCCC----CBCCH----HHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCBCHHHHH
T ss_pred hhhhccCchhhcCC----CCCCH----HHHHHHHcCCCCChHHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCcHHHH
Confidence 66554333222100 01232 359999999999999999999999999999999999995 56 9999999
Q ss_pred HHHHHHHHHHhhccCcccCCCCCcccceeeec-CCCCCCcccccccce
Q 012429 399 EEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQVSLYHFALFS 445 (464)
Q Consensus 399 ~~a~~~~~~f~~~yllD~d~a~n~g~wqw~ag-G~~~r~~~~~~~~~~ 445 (464)
+ ||+++ |||||+|||+|||||+|| |+|++| |++||+..
T Consensus 414 ~-------~F~~~-LiD~D~a~n~g~WQw~aG~g~D~~~-~RifNP~~ 452 (525)
T 2j4d_A 414 E-------WFETC-LLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPK 452 (525)
T ss_dssp H-------HHHHH-CTTCCHHHHHHHHHHHHTCSSCGGG-CCCCCHHH
T ss_pred H-------HHHHh-ccccchhcChHHHHhhcCCCCCccc-cccCCHHH
Confidence 8 99999 999999999999999999 999998 79998753
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=100.00 E-value=7e-62 Score=505.78 Aligned_cols=367 Identities=13% Similarity=0.096 Sum_probs=277.2
Q ss_pred cEEEEEcCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCC-ccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe---
Q 012429 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ-FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--- 105 (464)
Q Consensus 30 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~-~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--- 105 (464)
++++|.--|+-..++++|..+-. ....|+.+.+.+.. +...+.+|+.|++.||++|+++| +++|.+|+++.
T Consensus 16 ~~~~~ilgdQL~~~~~~~~~~~~----~~~~~~~~E~~~~~~~~~~h~~Ki~~l~saMr~fa~~L-~~~G~~v~y~~~~~ 90 (522)
T 3zxs_A 16 TRLILVLGDQLSDDLPALRAADP----AADLVVMAEVMEEGTYVPHHPQKIALILAAMRKFARRL-QERGFRVAYSRLDD 90 (522)
T ss_dssp CCEEECCTTCCCTTCHHHHTCCT----TTCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHH-HHTTCCEEEECTTC
T ss_pred heeEEeecccCCCccchhhhcCC----CCCEEEEEEechHhccCCcHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEeccC
Confidence 46899999999999998864311 11233333332211 34678999999999999999999 99999999998
Q ss_pred ----CCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEeeCC-eeEeCcccc----cCCCCccchh
Q 012429 106 ----GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAH-NVVPVWVAS----EKLEYSAKTL 176 (464)
Q Consensus 106 ----G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~~~-~l~~~~~~~----~~~~~~~~t~ 176 (464)
|++.++|.+++++++++.|++. +|.. +.++++|++. ||+++.+++. +|++++.+. .+++|.++.|
T Consensus 91 ~~~~g~~~~~L~~l~~~~~~~~v~~~-~P~e--~r~~~~l~~~---gi~v~~~~~~~fL~~~~e~~~~~~~~k~~~me~F 164 (522)
T 3zxs_A 91 PDTGPSIGAELLRRAAETGAREAVAT-RPGD--WRLIEALEAM---PLPVRFLPDDRFLCPADEFARWTEGRKQLRMEWF 164 (522)
T ss_dssp TTCCSSHHHHHHHHHHHHTCCCEEEE-CCSC--HHHHHHHHHS---SSCEEEECCCCSSSCHHHHHHHHTTCSSCCHHHH
T ss_pred ccccCCHHHHHHHHHHHcCCCEEEEe-Ccch--HHHHHHHHHc---CCcEEEeCCCCcccCHHHHHHhhcCCCCeEeeHH
Confidence 8899999999999999999998 5765 6678888754 8999999986 677887643 4688999889
Q ss_pred hHHHHhhCCCcCC-----------------CCCCCCCCCCcCCCCCCCCChhHHHHHHHhc-CC---CCCCCCCCCchHH
Q 012429 177 RGKINKLLPEYLI-----------------DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRK-GA---EVPEIGWCESGED 235 (464)
Q Consensus 177 ~~~~~k~~~~~~~-----------------~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~gGe~ 235 (464)
|+.++++++.++. +.|...+.+.+....++.++ .++++.+... .. .... ..|++||+
T Consensus 165 YR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~~~~p~~~~~~~d~~~-~~v~~~v~~~~~~~~G~~~~-~~~~~ge~ 242 (522)
T 3zxs_A 165 YREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDLLRPRPLRFEPDAEV-RAVLDLVEARFPRHFGRLRP-FHWATDRA 242 (522)
T ss_dssp HHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCCTTCCCCCCCCCCHHH-HHHHHHHHHHCTTSSSCCCS-CCCCCSHH
T ss_pred HHHHHHHhCcCCCCCCCCCCccCccccccccCCCCCCCCCCCCCCCchhH-HHHHHHHHHhccCCcCcccc-CCCCCCHH
Confidence 9999877543332 12221111111111111111 1233333221 11 1122 45899999
Q ss_pred HHHHHhccchhHHHhhhccCCCCCCCCCCCCC----CCCcCchhhcCCccCHHHHHHHHHHHhhh---CCccHHHHHHHh
Q 012429 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR----ALSGLSPYLHFGQISAQRCALEARKARKL---CPEAIDTFLEEL 308 (464)
Q Consensus 236 ~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~----~tS~LSPyL~~G~LS~R~v~~~~~~~~~~---~~~~~~~fi~eL 308 (464)
+|+++| ++|+++++.+|+++||.|+. + +||+|||||++|+||||+|++++.+.... ..+++++|++||
T Consensus 243 ~A~~~L----~~Fl~~rl~~Y~~~rD~~~~-~~~~~~tS~LSpyL~~G~LSpRev~~~~~~~~~~~~~~~~~~e~firel 317 (522)
T 3zxs_A 243 EALRAL----DHFIRESLPRFGDEQDAMLA-DDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGRAPLNAVEGFIRQI 317 (522)
T ss_dssp HHHHHH----HHHHHHTGGGTTTTTTCCBT-TBSSTTCCCCHHHHHHTSSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHhhhhhhhhhccCccc-CCCCCCcccccHHHhCCCcCHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 999999 99999999999999999976 4 69999999999999999999999876543 235678999999
Q ss_pred h-hhHHHHHHHHHhC-CCCCccccchHHHHhhhhhhccChhhhhccHHHHHhCCCCChHHHHHHHHHHHhcccchHHHHH
Q 012429 309 I-VRRELADNFCFYQ-PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMY 386 (464)
Q Consensus 309 ~-wRrEf~~~~~~~~-p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~aW~~G~TG~PiVDAaMRqL~~TGwmHnr~Rm~ 386 (464)
+ || ||++++++++ |++...+. |. + .++ ..++|++|+|||||||||||||++|||||||+|||
T Consensus 318 lgWR-EF~~~l~~~~~P~~~~~n~---~~------~-~~~-----l~~~~w~G~TG~P~VDA~MRqL~~TGwmHnr~Rmm 381 (522)
T 3zxs_A 318 LGWR-EYVRGIWTLSGPDYIRSNG---LG------H-SAA-----LPPLYWGKPTRMACLSAAVAQTRDLAYAHHIQRLM 381 (522)
T ss_dssp HTHH-HHHHHHHHHHGGGGGGCCT---TC------C-CBC-----CCGGGGTCCCSCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHH-HHHHHHHHHhCcccccccc---cc------c-ccc-----chHHHhcCCCCCHHHHHHHHHHHHHhchhHHHHHH
Confidence 7 87 9999998864 87754321 11 0 011 12345599999999999999999999999999999
Q ss_pred HH----hhh-hcCCCCHHHHHHHHHHHhhccCccc----CCCCCcccceeeec-CCCCCCcc
Q 012429 387 WA----KKI-LEWTTGPEEALAIAIYLNDKYEIDG----RDPNGYVGCMWSIC-GVHDQVSL 438 (464)
Q Consensus 387 vA----k~L-idWr~G~~~a~~~~~~f~~~yllD~----d~a~n~g~wqw~ag-G~~~r~~~ 438 (464)
|| |+| |||+.|++ ||+++ |||| ..||++|||||++| +++..||.
T Consensus 382 Vasfl~k~L~idWr~G~~-------wF~~~-LiD~~~Wv~~~N~~Gm~q~a~Gg~~~~KPY~ 435 (522)
T 3zxs_A 382 VTGNFALLAGVDPAEVHE-------WYLSV-YIDALEWVEAPNTIGMSQFADHGLLGSKPYV 435 (522)
T ss_dssp THHHHHHHTTBCHHHHHH-------HHHHH-CTTCCHHHHHHHHHTTTTCCSSSTTCSSCCC
T ss_pred HHHHHHHHcCCChHHHHH-------HHHHH-hcchhhhhhccccccchheecCCccCCCCCC
Confidence 88 467 99999998 99999 9999 57999999999999 78999986
No 14
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=93.95 E-value=0.29 Score=40.94 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=64.8
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcccc-c---------hhhHHHHHHHHHHHHHHHHhhcCC---cEEEE
Q 012429 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA-K---------ARQLGFMLRGLRLLQRNIEETFQI---LFFLF 104 (464)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~-~---------~~r~~Fl~esL~~L~~~L~~~~G~---~L~v~ 104 (464)
|.--....+|..|+..|.+.+.+|..+++.++..... . .....-..+.|..+.+.+ ++.|+ ...+.
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~~~ 91 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFV-ATTSAPNLKTEIS 91 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSCCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HhcCCcceEEEEe
Confidence 3434455788888888877788999999998753211 0 122234455677777888 77777 55677
Q ss_pred eCCccchHHH-HHHHhCccEEEEc
Q 012429 105 QGEAEDNIPN-FVRECGASLLVTD 127 (464)
Q Consensus 105 ~G~~~~~l~~-l~~~~~~~~V~~~ 127 (464)
.|++.+.|.+ .+++.+++-|+.-
T Consensus 92 ~g~~~~~I~~~~a~~~~~dliV~G 115 (146)
T 3s3t_A 92 YGIPKHTIEDYAKQHPEIDLIVLG 115 (146)
T ss_dssp EECHHHHHHHHHHHSTTCCEEEEE
T ss_pred cCChHHHHHHHHHhhcCCCEEEEC
Confidence 8999999999 9999999999983
No 15
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=93.88 E-value=0.35 Score=41.54 Aligned_cols=88 Identities=23% Similarity=0.099 Sum_probs=65.8
Q ss_pred CC-CccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEE----EeCCccchH
Q 012429 38 DQ-RVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFL----FQGEAEDNI 112 (464)
Q Consensus 38 DL-Rl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v----~~G~~~~~l 112 (464)
|. --....+|..|+..|...+.+|..+++.++.... ......-..+.|.++.+.+ ++.|+++.+ ..|++.+.|
T Consensus 32 D~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~~v~~G~~~~~I 109 (155)
T 3dlo_A 32 DKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT-KDEDIIEAKETLSWAVSII-RKEGAEGEEHLLVRGKEPPDDI 109 (155)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS-CHHHHHHHHHHHHHHHHHH-HHTTCCEEEEEEESSSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc-cHHHHHHHHHHHHHHHHHH-HhcCCCceEEEEecCCCHHHHH
Confidence 55 4455678888888888777899999998864321 1222334566788888888 888987653 349999999
Q ss_pred HHHHHHhCccEEEEc
Q 012429 113 PNFVRECGASLLVTD 127 (464)
Q Consensus 113 ~~l~~~~~~~~V~~~ 127 (464)
.+.+++.+++.|+.-
T Consensus 110 ~~~a~~~~~DLIV~G 124 (155)
T 3dlo_A 110 VDFADEVDAIAIVIG 124 (155)
T ss_dssp HHHHHHTTCSEEEEE
T ss_pred HHHHHHcCCCEEEEC
Confidence 999999999999983
No 16
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=93.52 E-value=0.47 Score=39.47 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHhhhCCCCEEEEEEecCCccc--c-------chhhHHHHHHHHHHHHHHHHhhcCC-----cEEEEeCCc
Q 012429 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLG--A-------KARQLGFMLRGLRLLQRNIEETFQI-----LFFLFQGEA 108 (464)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~--~-------~~~r~~Fl~esL~~L~~~L~~~~G~-----~L~v~~G~~ 108 (464)
...+|..|+..|.+.+.+|..+++.++.... . ........-+.++.+++-+ ++.|+ ...+..|++
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~v~~~~~~g~~ 94 (143)
T 3fdx_A 16 TERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIA-KKFSIPEDRMHFHVAEGSP 94 (143)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHH-TTSCCCGGGEEEEEEESCH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHH-HHcCCCCCceEEEEEecCh
Confidence 5678999998888778899999999874210 0 0112234456677777777 77775 456788999
Q ss_pred cchHHHHHHHhCccEEEEc
Q 012429 109 EDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 109 ~~~l~~l~~~~~~~~V~~~ 127 (464)
.+.|.+.+++.+++-|+.-
T Consensus 95 ~~~I~~~a~~~~~dliV~G 113 (143)
T 3fdx_A 95 KDKILALAKSLPADLVIIA 113 (143)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEe
Confidence 9999999999999999984
No 17
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=93.37 E-value=0.6 Score=39.63 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHhhhCCCCEEEEEEecCCccc----c----chhhHHHHHHHHHHHHHHHHhhcCC---cEEEEe-CCcc
Q 012429 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----A----KARQLGFMLRGLRLLQRNIEETFQI---LFFLFQ-GEAE 109 (464)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----~----~~~r~~Fl~esL~~L~~~L~~~~G~---~L~v~~-G~~~ 109 (464)
....+|..|+..|.+.+.+|..+++.++.... . ......-..+.|.++.+.+ ++.|+ ...+.. |++.
T Consensus 29 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~v~~~g~~~ 107 (156)
T 3fg9_A 29 SSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLA-EQRGVNQVEPLVYEGGDVD 107 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHH-HHHTCSSEEEEEEECSCHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHH-HHcCCCceEEEEEeCCCHH
Confidence 34567888888887778899999999875321 0 1122334556777788888 88887 346677 9999
Q ss_pred chHHHH-HHHhCccEEEEc
Q 012429 110 DNIPNF-VRECGASLLVTD 127 (464)
Q Consensus 110 ~~l~~l-~~~~~~~~V~~~ 127 (464)
+.|.+. +++.+++-|+.-
T Consensus 108 ~~I~~~~a~~~~~DlIV~G 126 (156)
T 3fg9_A 108 DVILEQVIPEFKPDLLVTG 126 (156)
T ss_dssp HHHHHTHHHHHCCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEC
Confidence 999998 999999999983
No 18
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=93.17 E-value=0.43 Score=40.14 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=58.9
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCcc---c--------cchhhHHHHHHHHHHHHHHHHhhcCC---cEEE
Q 012429 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---G--------AKARQLGFMLRGLRLLQRNIEETFQI---LFFL 103 (464)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---~--------~~~~r~~Fl~esL~~L~~~L~~~~G~---~L~v 103 (464)
|.--....+|..|+..|.+.+.+|..+++.++... . .........-++.+.|++-. ++.|+ ...+
T Consensus 14 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~ 92 (150)
T 3tnj_A 14 DFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIG-NTLGIDPAHRWL 92 (150)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHH-HHHTCCGGGEEE
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHH-HHcCCCcceEEE
Confidence 33334567888999888877789999999886421 0 01112233334444444444 55565 4778
Q ss_pred EeCCccchHHHHHHHhCccEEEEc
Q 012429 104 FQGEAEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 104 ~~G~~~~~l~~l~~~~~~~~V~~~ 127 (464)
..|++.+.|.+.+++.+++.|+.-
T Consensus 93 ~~g~~~~~I~~~a~~~~~dliV~G 116 (150)
T 3tnj_A 93 VWGEPREEIIRIAEQENVDLIVVG 116 (150)
T ss_dssp EESCHHHHHHHHHHHTTCSEEEEE
T ss_pred ecCCHHHHHHHHHHHcCCCEEEEe
Confidence 889999999999999999999984
No 19
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=92.63 E-value=0.52 Score=40.69 Aligned_cols=85 Identities=13% Similarity=-0.020 Sum_probs=60.1
Q ss_pred cCCHHHHHHHHHhhhCCCCEEEEEEecCCccc-----cc--------------hhhHHHHHHHHHHHHHHHHhhcCCcE-
Q 012429 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFLG-----AK--------------ARQLGFMLRGLRLLQRNIEETFQILF- 101 (464)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~-----~~--------------~~r~~Fl~esL~~L~~~L~~~~G~~L- 101 (464)
....+|..|+..|.+.+.+|..+++.++.... .. .....-..+.|.++.+.+ +..|++.
T Consensus 17 ~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~ 95 (170)
T 2dum_A 17 GAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEV-KRAFRAKN 95 (170)
T ss_dssp HHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHH-HHHTTCSE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcee
Confidence 34568888888887777889999998764211 00 011223345566777777 6677653
Q ss_pred ---EEEeCCccchHHHHHHHhCccEEEEc
Q 012429 102 ---FLFQGEAEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 102 ---~v~~G~~~~~l~~l~~~~~~~~V~~~ 127 (464)
.+..|++.+.|.+.+++.+++.|+.-
T Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~DlIV~G 124 (170)
T 2dum_A 96 VRTIIRFGIPWDEIVKVAEEENVSLIILP 124 (170)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTCSEEEEE
T ss_pred eeeEEecCChHHHHHHHHHHcCCCEEEEC
Confidence 56779999999999999999999984
No 20
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=92.29 E-value=0.72 Score=38.44 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHhhhCCCCEEEEEEecCCc-c---------c----cchhhHHHHHHHHHHHHHHHHhhcCCc-----EEE
Q 012429 43 DNWALIHAVDQANKNNVPVAVAFNLFDQF-L---------G----AKARQLGFMLRGLRLLQRNIEETFQIL-----FFL 103 (464)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~~-~---------~----~~~~r~~Fl~esL~~L~~~L~~~~G~~-----L~v 103 (464)
...+|..|+..|.+.+.+|..+++.++.. . . .......-..+.|..+.+.+ ++.|++ ..+
T Consensus 15 s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~~~~ 93 (147)
T 3hgm_A 15 AVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRA-TELGVPADKVRAFV 93 (147)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHH-HHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHH-HhcCCCccceEEEE
Confidence 44678888888887788999999988642 0 0 01222344556778888888 888854 566
Q ss_pred EeCCccchHHHHHHHhCccEEEEc
Q 012429 104 FQGEAEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 104 ~~G~~~~~l~~l~~~~~~~~V~~~ 127 (464)
..|++.+.|.+.+++.+++-|+.-
T Consensus 94 ~~g~~~~~I~~~a~~~~~dliV~G 117 (147)
T 3hgm_A 94 KGGRPSRTIVRFARKRECDLVVIG 117 (147)
T ss_dssp EESCHHHHHHHHHHHTTCSEEEEC
T ss_pred ecCCHHHHHHHHHHHhCCCEEEEe
Confidence 789999999999999999999983
No 21
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=91.22 E-value=0.97 Score=38.48 Aligned_cols=84 Identities=10% Similarity=0.123 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHhhhCCCCEEEEEEecCC-----cc-ccc-------hh-----------hHHHHHHHHHHHHHHHHhhcC
Q 012429 43 DNWALIHAVDQANKNNVPVAVAFNLFDQ-----FL-GAK-------AR-----------QLGFMLRGLRLLQRNIEETFQ 98 (464)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~-----~~-~~~-------~~-----------r~~Fl~esL~~L~~~L~~~~G 98 (464)
...+|..|++.|.+.+.+|..+++.++. .. ..+ +. ...-..+.|.++.+.+ +..|
T Consensus 18 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g 96 (162)
T 1mjh_A 18 AEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL-EDVG 96 (162)
T ss_dssp HHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHcC
Confidence 4468888888887777889999998864 10 110 10 0112334566677777 7778
Q ss_pred CcE--EEEeCCccchHHHHHHHhCccEEEEc
Q 012429 99 ILF--FLFQGEAEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 99 ~~L--~v~~G~~~~~l~~l~~~~~~~~V~~~ 127 (464)
++. .+..|++.+.|.+.+++.+++.|+.-
T Consensus 97 ~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G 127 (162)
T 1mjh_A 97 FKVKDIIVVGIPHEEIVKIAEDEGVDIIIMG 127 (162)
T ss_dssp CEEEEEEEEECHHHHHHHHHHHTTCSEEEEE
T ss_pred CceEEEEcCCCHHHHHHHHHHHcCCCEEEEc
Confidence 764 56679999999999999999999983
No 22
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=90.62 E-value=1.6 Score=35.94 Aligned_cols=82 Identities=10% Similarity=-0.014 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHh-hhCCCCEEEEEEecCCccccc---------hhhH-HHHHHHHHHHHHHHHhhcCCc--EEEEeCCcc
Q 012429 43 DNWALIHAVDQA-NKNNVPVAVAFNLFDQFLGAK---------ARQL-GFMLRGLRLLQRNIEETFQIL--FFLFQGEAE 109 (464)
Q Consensus 43 DN~aL~~A~~~a-~~~~~~vl~vfi~dp~~~~~~---------~~r~-~Fl~esL~~L~~~L~~~~G~~--L~v~~G~~~ 109 (464)
...+|..|+..| .+.+.+|..+++.++...... .... .-..+.|..+.+.+ ++.|++ ..+..|++.
T Consensus 14 s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~v~~g~~~ 92 (138)
T 3idf_A 14 CERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFF-TEKGINPFVVIKEGEPV 92 (138)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCCCEEEEEESCHH
T ss_pred HHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCeEEEEecCChH
Confidence 456788888888 777788999999987532110 0111 33445677777778 777776 566789999
Q ss_pred chHHHHHHHhCccEEEEc
Q 012429 110 DNIPNFVRECGASLLVTD 127 (464)
Q Consensus 110 ~~l~~l~~~~~~~~V~~~ 127 (464)
+.|.+.++ +++-|+.-
T Consensus 93 ~~I~~~a~--~~dliV~G 108 (138)
T 3idf_A 93 EMVLEEAK--DYNLLIIG 108 (138)
T ss_dssp HHHHHHHT--TCSEEEEE
T ss_pred HHHHHHHh--cCCEEEEe
Confidence 99999888 99999884
No 23
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=89.96 E-value=0.57 Score=40.50 Aligned_cols=88 Identities=16% Similarity=0.041 Sum_probs=58.1
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEE--EEecCCcc--ccc-------hhhHHHHHHHHHHHHHHHHhhcCCc---EEE
Q 012429 38 DQRVRDNWALIHAVDQANKNNVPVAVA--FNLFDQFL--GAK-------ARQLGFMLRGLRLLQRNIEETFQIL---FFL 103 (464)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~v--fi~dp~~~--~~~-------~~r~~Fl~esL~~L~~~L~~~~G~~---L~v 103 (464)
|.--....+|..|++.|. .+.+|..| ++.++... ... .....-..+.|.++.+.+ ++.|++ ..+
T Consensus 25 D~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gv~~v~~~v 102 (163)
T 1tq8_A 25 DGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERA-HNAGAKNVEERP 102 (163)
T ss_dssp CSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHH-HTTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHcCCCeEEEEE
Confidence 443344568888888888 77789888 88765321 000 000011234567777788 777877 456
Q ss_pred EeCCccchHHHHHHHhCccEEEEc
Q 012429 104 FQGEAEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 104 ~~G~~~~~l~~l~~~~~~~~V~~~ 127 (464)
..|++.+.|.+.+++.+++.|+.-
T Consensus 103 ~~G~~~~~I~~~a~~~~~DLIV~G 126 (163)
T 1tq8_A 103 IVGAPVDALVNLADEEKADLLVVG 126 (163)
T ss_dssp ECSSHHHHHHHHHHHTTCSEEEEE
T ss_pred ecCCHHHHHHHHHHhcCCCEEEEC
Confidence 789999999999999999999984
No 24
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=89.12 E-value=6.8 Score=37.11 Aligned_cols=113 Identities=11% Similarity=0.050 Sum_probs=71.9
Q ss_pred CHHHHHHHHHhhhC--CCCEEEEEEecCCcccc---------chhhHHHHHHHHHHHHHHHHhhcCC---cEEEEeCCcc
Q 012429 44 NWALIHAVDQANKN--NVPVAVAFNLFDQFLGA---------KARQLGFMLRGLRLLQRNIEETFQI---LFFLFQGEAE 109 (464)
Q Consensus 44 N~aL~~A~~~a~~~--~~~vl~vfi~dp~~~~~---------~~~r~~Fl~esL~~L~~~L~~~~G~---~L~v~~G~~~ 109 (464)
..+|..|...|... +.+|..|++.++..... ........-+....|++-+ ++.|+ ..++..|++.
T Consensus 177 ~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~v~~g~~~ 255 (319)
T 3olq_A 177 LKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKELR-QKFSIPEEKTHVKEGLPE 255 (319)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHHHH-HHhCCCcccEEEecCCcH
Confidence 56888888888776 77999999988753210 0111223334444555555 66675 5788899999
Q ss_pred chHHHHHHHhCccEEEEc-CCcChHHHHHHHHHHHH-hc-CCCeEEEeeCC
Q 012429 110 DNIPNFVRECGASLLVTD-FSPLREIRRCKDKICNR-VS-DSVTIHEVDAH 157 (464)
Q Consensus 110 ~~l~~l~~~~~~~~V~~~-~~p~~~~~~rd~~v~~~-l~-~~v~~~~~~~~ 157 (464)
+.|.+.+++.+++-|+.- .......+-.--.+.+. +. ..|++..+...
T Consensus 256 ~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~ 306 (319)
T 3olq_A 256 QVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKPD 306 (319)
T ss_dssp HHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECCT
T ss_pred HHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECCC
Confidence 999999999999999983 22222222233344444 34 57888776443
No 25
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=88.26 E-value=1.8 Score=35.71 Aligned_cols=111 Identities=11% Similarity=0.042 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHhhhCCCCEEEEEEecC--Cccc-cchh-hHH----HHHHHHHHHHHHHHhhcCCc---EEEEeCCccc
Q 012429 42 RDNWALIHAVDQANKNNVPVAVAFNLFD--QFLG-AKAR-QLG----FMLRGLRLLQRNIEETFQIL---FFLFQGEAED 110 (464)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~vl~vfi~dp--~~~~-~~~~-r~~----Fl~esL~~L~~~L~~~~G~~---L~v~~G~~~~ 110 (464)
....+|..|+..|.+.+.+|..+++.++ .... .... .-. ..-++...|++-+ ++.|++ ..+..|++.+
T Consensus 14 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~g~~~~ 92 (141)
T 1jmv_A 14 ESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLA-ESVDYPISEKLSGSGDLGQ 92 (141)
T ss_dssp THHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHH-HHSSSCCCCEEEEEECHHH
T ss_pred hhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHH-HHcCCCceEEEEecCCHHH
Confidence 3456888898888777788999999842 2111 0000 000 0112333444445 556764 4677899999
Q ss_pred hHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHH-hc-CCCeEEEee
Q 012429 111 NIPNFVRECGASLLVTDFSPLREIRRCKDKICNR-VS-DSVTIHEVD 155 (464)
Q Consensus 111 ~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~-l~-~~v~~~~~~ 155 (464)
.|.+.+++.+++.|+.-.......+ . -.+.+. +. .+|++..+.
T Consensus 93 ~I~~~a~~~~~dliV~G~~~~~~~~-l-gs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 93 VLSDAIEQYDVDLLVTGHHQDFWSK-L-MSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCHHH-H-HHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCchhhh-h-cchHHHHHhcCCCCEEEee
Confidence 9999999999999998422322222 2 244443 34 578886654
No 26
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=88.04 E-value=2.6 Score=34.57 Aligned_cols=84 Identities=15% Similarity=0.032 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHhhhCCCCEEEEEEecCCccccc---hhh--HHHHHHHHHHHHHHHHhhcCC---cEEEEeCCccchHHH
Q 012429 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQ--LGFMLRGLRLLQRNIEETFQI---LFFLFQGEAEDNIPN 114 (464)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~---~~r--~~Fl~esL~~L~~~L~~~~G~---~L~v~~G~~~~~l~~ 114 (464)
...+|..|+..|.+.+.+|..+++.++...... +.. ....-++-+.|++-. +..|+ ...+..|++.+.|.+
T Consensus 15 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~g~~~~~I~~ 93 (137)
T 2z08_A 15 ARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEAR-ALTGVPKEDALLLEGVPAEAILQ 93 (137)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHH-HHHCCCGGGEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHH-HHcCCCccEEEEEecCHHHHHHH
Confidence 346788888888777788999999886321111 000 000111122222222 22566 567788999999999
Q ss_pred HHHHhCccEEEEc
Q 012429 115 FVRECGASLLVTD 127 (464)
Q Consensus 115 l~~~~~~~~V~~~ 127 (464)
.+++.+++.|+.-
T Consensus 94 ~a~~~~~dliV~G 106 (137)
T 2z08_A 94 AARAEKADLIVMG 106 (137)
T ss_dssp HHHHTTCSEEEEE
T ss_pred HHHHcCCCEEEEC
Confidence 9999999999983
No 27
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=87.47 E-value=3 Score=39.30 Aligned_cols=79 Identities=18% Similarity=0.051 Sum_probs=62.1
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcE--EEEeCCccchHHHH
Q 012429 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILF--FLFQGEAEDNIPNF 115 (464)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L--~v~~G~~~~~l~~l 115 (464)
|.--....+|..|...|...+.+|..+++.++.. --+.+.++.+.| ++.|++. .+..|++.+.|.+.
T Consensus 178 d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------~~~~l~~~~~~l-~~~~~~~~~~~~~g~~~~~I~~~ 246 (294)
T 3loq_A 178 DFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------KTADLRVMEEVI-GAEGIEVHVHIESGTPHKAILAK 246 (294)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------CHHHHHHHHHHH-HHTTCCEEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------HHHHHHHHHHHH-HHcCCcEEEEEecCCHHHHHHHH
Confidence 5555566788888888777777899999988743 234677888889 8888764 45679999999999
Q ss_pred HHHhCccEEEEc
Q 012429 116 VRECGASLLVTD 127 (464)
Q Consensus 116 ~~~~~~~~V~~~ 127 (464)
+++.+++-|+.-
T Consensus 247 a~~~~~dLlV~G 258 (294)
T 3loq_A 247 REEINATTIFMG 258 (294)
T ss_dssp HHHTTCSEEEEE
T ss_pred HHhcCcCEEEEe
Confidence 999999999983
No 28
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=84.51 E-value=4.1 Score=38.29 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhhhCCCCEEEEEEecCCccccc----hhhHHHHHHHHHHHHHHHHhhcCC---cEEEEeCCccchHHHHH
Q 012429 44 NWALIHAVDQANKNNVPVAVAFNLFDQFLGAK----ARQLGFMLRGLRLLQRNIEETFQI---LFFLFQGEAEDNIPNFV 116 (464)
Q Consensus 44 N~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~----~~r~~Fl~esL~~L~~~L~~~~G~---~L~v~~G~~~~~l~~l~ 116 (464)
..+|..|...|...+.+|..+++.++...... ...-...-+....|++-+ ++.|+ ...+..|++.+.|.+.+
T Consensus 155 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~v~~g~~~~~I~~~a 233 (290)
T 3mt0_A 155 AGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQ-AEYGFSDEQLHIEEGPADVLIPRTA 233 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHH-HHHTCCTTTEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHH-HHcCCCcceEEEeccCHHHHHHHHH
Confidence 57888888888877889999999886432110 111112223344444445 55576 46788999999999999
Q ss_pred HHhCccEEEEc
Q 012429 117 RECGASLLVTD 127 (464)
Q Consensus 117 ~~~~~~~V~~~ 127 (464)
++.+++-|+.-
T Consensus 234 ~~~~~dLiVmG 244 (290)
T 3mt0_A 234 QKLDAVVTVIG 244 (290)
T ss_dssp HHHTCSEEEEE
T ss_pred HhcCCCEEEEC
Confidence 99999999983
No 29
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=84.13 E-value=11 Score=32.09 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=53.8
Q ss_pred CHHHHHHHHHhhh---CCCCEEEEEEecCCccc--------cchh--------hHHHHHHHHHHHHHHHHhhcCCcE--E
Q 012429 44 NWALIHAVDQANK---NNVPVAVAFNLFDQFLG--------AKAR--------QLGFMLRGLRLLQRNIEETFQILF--F 102 (464)
Q Consensus 44 N~aL~~A~~~a~~---~~~~vl~vfi~dp~~~~--------~~~~--------r~~Fl~esL~~L~~~L~~~~G~~L--~ 102 (464)
..+|..|++.|.+ .+.+|..+++.++.... .... ...-..+.|..+.+.+ .+.|++. .
T Consensus 28 ~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~ 106 (175)
T 2gm3_A 28 KRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKC-HEIGVGCEAW 106 (175)
T ss_dssp HHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHTCEEEEE
T ss_pred HHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCceEEE
Confidence 3577788775533 35578889888653110 0010 0111334566677777 7778765 4
Q ss_pred EEeCCccchHHHHHHHhCccEEEEc
Q 012429 103 LFQGEAEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 103 v~~G~~~~~l~~l~~~~~~~~V~~~ 127 (464)
+..|++.+.|.+.+++.+++.|+.-
T Consensus 107 v~~G~~~~~I~~~a~~~~~DLIVmG 131 (175)
T 2gm3_A 107 IKTGDPKDVICQEVKRVRPDFLVVG 131 (175)
T ss_dssp EEESCHHHHHHHHHHHHCCSEEEEE
T ss_pred EecCCHHHHHHHHHHHhCCCEEEEe
Confidence 5679999999999999999999983
No 30
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=82.33 E-value=5.8 Score=32.39 Aligned_cols=89 Identities=17% Similarity=0.025 Sum_probs=58.0
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEe-cC--Ccc-------ccch----hhHHHHHHHHHHHHHH--HHhhcC-Cc
Q 012429 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNL-FD--QFL-------GAKA----RQLGFMLRGLRLLQRN--IEETFQ-IL 100 (464)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~-dp--~~~-------~~~~----~r~~Fl~esL~~L~~~--L~~~~G-~~ 100 (464)
|.--....+|..|+..|.+.+.+|..+++. ++ ... .... ....-..+.|.++ +. + ...| +.
T Consensus 12 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~~~ 89 (138)
T 1q77_A 12 DAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLT-GSTEIPG 89 (138)
T ss_dssp STTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHH-SCCCCCC
T ss_pred cCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhh-ccCCcce
Confidence 333345678999999888778899999998 62 110 1000 0011123344455 44 3 3344 55
Q ss_pred EEEEeCCccchHHHHHHHhCccEEEEcC
Q 012429 101 FFLFQGEAEDNIPNFVRECGASLLVTDF 128 (464)
Q Consensus 101 L~v~~G~~~~~l~~l~~~~~~~~V~~~~ 128 (464)
..+..|++.+.|.+.+++.+++.|+.-.
T Consensus 90 ~~~~~g~~~~~I~~~a~~~~~dliV~G~ 117 (138)
T 1q77_A 90 VEYRIGPLSEEVKKFVEGKGYELVVWAC 117 (138)
T ss_dssp EEEECSCHHHHHHHHHTTSCCSEEEECS
T ss_pred EEEEcCCHHHHHHHHHHhcCCCEEEEeC
Confidence 6778899999999999999999999853
No 31
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=78.76 E-value=6 Score=37.14 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=61.8
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEE--E-eCCccchHHH
Q 012429 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFL--F-QGEAEDNIPN 114 (464)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v--~-~G~~~~~l~~ 114 (464)
|.--....+|..|+..|.+.+.+|..+++.+|. .. .+.|+++.+.+ +..|++... . .|++.+.|.+
T Consensus 15 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~-----~~-----~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~ 83 (290)
T 3mt0_A 15 EPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRR-----DH-----SAALNDLAQEL-REEGYSVSTNQAWKDSLHQTIIA 83 (290)
T ss_dssp CSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSS-----CC-----HHHHHHHHHHH-HHTTCCEEEEEECSSSHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHhcCCeEEEEEeeCcH-----HH-----HHHHHHHHHHH-hhCCCeEEEEEEeCCCHHHHHHH
Confidence 666678899999999998888899999998851 11 13466777788 777887654 3 3778899999
Q ss_pred HHHHhCccEEEEc
Q 012429 115 FVRECGASLLVTD 127 (464)
Q Consensus 115 l~~~~~~~~V~~~ 127 (464)
.+++.+++-|+.-
T Consensus 84 ~a~~~~~dliV~G 96 (290)
T 3mt0_A 84 EQQAEGCGLIIKQ 96 (290)
T ss_dssp HHHHHTCSEEEEE
T ss_pred HHHhcCCCEEEEe
Confidence 9999999999984
No 32
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=76.98 E-value=16 Score=34.34 Aligned_cols=89 Identities=16% Similarity=0.062 Sum_probs=62.0
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc----cc-hhhH-------HHHHHHHHHHHHHHHhhcCCcE--EE
Q 012429 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AK-ARQL-------GFMLRGLRLLQRNIEETFQILF--FL 103 (464)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----~~-~~r~-------~Fl~esL~~L~~~L~~~~G~~L--~v 103 (464)
|.--....+|..|+..|.+.+.+|..+++.++.... .+ .... .-..+.|+++.+.+ +..|++. .+
T Consensus 15 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~v~~~~~~ 93 (319)
T 3olq_A 15 DPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYY-LEAGIQIDIKV 93 (319)
T ss_dssp CTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHH-hhcCCeEEEEE
Confidence 666667899999999998888899999987642111 00 1111 11234556666666 6678765 44
Q ss_pred E-eCCccchHHHHHHHhCccEEEEc
Q 012429 104 F-QGEAEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 104 ~-~G~~~~~l~~l~~~~~~~~V~~~ 127 (464)
. .|++.+.|.+.+++.+++-|+.-
T Consensus 94 ~~~g~~~~~i~~~a~~~~~DLiV~G 118 (319)
T 3olq_A 94 IWHNRPYEAIIEEVITDKHDLLIKM 118 (319)
T ss_dssp EECSCHHHHHHHHHHHHTCSEEEEE
T ss_pred EecCChHHHHHHHHHhcCCCEEEEe
Confidence 5 79999999999999999999983
No 33
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=76.16 E-value=10 Score=35.57 Aligned_cols=88 Identities=16% Similarity=-0.008 Sum_probs=64.1
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc----------cchhhHHHHHHHHHHHHHHHHhhcCCcEEE---E
Q 012429 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----------AKARQLGFMLRGLRLLQRNIEETFQILFFL---F 104 (464)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----------~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v---~ 104 (464)
|.--....+|..|+..|.+.+.+|..+++.++.... .......-..+.|.++.+.+ ++.|++... .
T Consensus 30 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~v~ 108 (294)
T 3loq_A 30 DLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKI-EAAGIKAEVIKPF 108 (294)
T ss_dssp CSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHH-HHTTCEEEECSSC
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcceeEee
Confidence 444455678888988888888899999998864311 00122334556778888888 888988765 4
Q ss_pred -eCCccchHHHHHHHhCccEEEEcC
Q 012429 105 -QGEAEDNIPNFVRECGASLLVTDF 128 (464)
Q Consensus 105 -~G~~~~~l~~l~~~~~~~~V~~~~ 128 (464)
.|++.+.| .+++.+++.|+.-.
T Consensus 109 ~~g~~~~~I--~a~~~~~DliV~G~ 131 (294)
T 3loq_A 109 PAGDPVVEI--IKASENYSFIAMGS 131 (294)
T ss_dssp CEECHHHHH--HHHHTTSSEEEEEC
T ss_pred ccCChhHhe--eeccCCCCEEEEcC
Confidence 78998888 88899999999853
No 34
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=69.33 E-value=9.9 Score=34.94 Aligned_cols=82 Identities=18% Similarity=0.023 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHhhhCCCCEEEEEEecCCccc------c--------------chhhHHHHHHHHHHHHHHHHhhcCCcE-
Q 012429 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLG------A--------------KARQLGFMLRGLRLLQRNIEETFQILF- 101 (464)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~------~--------------~~~r~~Fl~esL~~L~~~L~~~~G~~L- 101 (464)
...+|..|+..|.+.+.+|..+++.++.... . ......-..+.|..+.+.+ ++.|++.
T Consensus 13 s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~ 91 (268)
T 3ab8_A 13 ARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQSA-LAAGVAVE 91 (268)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCEE
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCeE
Confidence 4468889988888778899999998753211 0 0011122345566677777 7778764
Q ss_pred -EEEeCCccchHHHHHHHhCccEEEEc
Q 012429 102 -FLFQGEAEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 102 -~v~~G~~~~~l~~l~~~~~~~~V~~~ 127 (464)
.+..|++.+.|.+. +.+++-|+.-
T Consensus 92 ~~~~~g~~~~~I~~~--~~~~dliV~G 116 (268)
T 3ab8_A 92 AVLEEGVPHEAILRR--ARAADLLVLG 116 (268)
T ss_dssp EEEEEECHHHHHHHH--HTTCSEEEEE
T ss_pred EEEecCCHHHHHHhh--ccCCCEEEEe
Confidence 45679998888887 7799999984
No 35
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=68.89 E-value=6 Score=37.48 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=54.6
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccc----cc-hhhHHHHHHHHHHHHHHHHhh--cCC--cEEEEeCCc
Q 012429 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AK-ARQLGFMLRGLRLLQRNIEET--FQI--LFFLFQGEA 108 (464)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----~~-~~r~~Fl~esL~~L~~~L~~~--~G~--~L~v~~G~~ 108 (464)
|..-....+|..|...|...+.+|..|++.++.... .. .....-..+.|.++.+.+ .+ .|+ ...+..|++
T Consensus 179 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~g~~ 257 (309)
T 3cis_A 179 DGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGW-QERYPNVAITRVVVRDQP 257 (309)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTH-HHHCTTSCEEEEEESSCH
T ss_pred CCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHH-HhhCCCCcEEEEEEcCCH
Confidence 555555678888888887777899999998864211 00 111112223344444444 33 244 455677999
Q ss_pred cchHHHHHHHhCccEEEE
Q 012429 109 EDNIPNFVRECGASLLVT 126 (464)
Q Consensus 109 ~~~l~~l~~~~~~~~V~~ 126 (464)
.+.|.+.++ +++-|+.
T Consensus 258 ~~~I~~~a~--~adliV~ 273 (309)
T 3cis_A 258 ARQLVQRSE--EAQLVVV 273 (309)
T ss_dssp HHHHHHHHT--TCSEEEE
T ss_pred HHHHHHhhC--CCCEEEE
Confidence 999999887 8999988
No 36
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=67.19 E-value=18 Score=34.13 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHhhhCCCCEEEEEEecCCccc-----cc-h---hhHHHHHHHHHHHHHHHHhhc-----CCcE--EEEe
Q 012429 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFLG-----AK-A---RQLGFMLRGLRLLQRNIEETF-----QILF--FLFQ 105 (464)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~-----~~-~---~r~~Fl~esL~~L~~~L~~~~-----G~~L--~v~~ 105 (464)
....+|..|+..|.+.+.+|..+++.+|.... .. . ....-..+.|.++.+.+ ++. |++. .+..
T Consensus 31 ~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 109 (309)
T 3cis_A 31 AAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVV-EQASLRAGPPTVHSEIVP 109 (309)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCSSSCCSCEEEEEES
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHH-HHhcccCCCceEEEEEec
Confidence 34568888888888778899999999865321 01 0 11122344566777777 665 7655 4567
Q ss_pred CCccchHHHHHHHhCccEEEEc
Q 012429 106 GEAEDNIPNFVRECGASLLVTD 127 (464)
Q Consensus 106 G~~~~~l~~l~~~~~~~~V~~~ 127 (464)
|++.+.|.+.++ +++.|+.-
T Consensus 110 g~~~~~I~~~a~--~~DliV~G 129 (309)
T 3cis_A 110 AAAVPTLVDMSK--DAVLMVVG 129 (309)
T ss_dssp SCHHHHHHHHGG--GEEEEEEE
T ss_pred CCHHHHHHHHhc--CCCEEEEC
Confidence 999888888876 78888883
No 37
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=67.09 E-value=11 Score=35.07 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=47.6
Q ss_pred hhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe--CC---ccchHHHHHHHhCccEEEEcC
Q 012429 54 ANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--GE---AEDNIPNFVRECGASLLVTDF 128 (464)
Q Consensus 54 a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--G~---~~~~l~~l~~~~~~~~V~~~~ 128 (464)
|.+.|-.|+.++..-+... .+..|-...+...+... +.+|+++++.. |+ -.+.+.+++++.+++.|++-.
T Consensus 24 l~~~G~eV~~L~~~~~~~~----~s~~~h~~~~e~a~~~A-~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gd 98 (237)
T 3rjz_A 24 AIKNRFSVKFLVTMVSENE----ESYMYHTINANLTDLQA-RALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGA 98 (237)
T ss_dssp HHHTTCEEEEEEEEECC------------CCSSSHHHHHH-HHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC-
T ss_pred HHHcCCeEEEEEEEcCCCC----CccccCCccHHHHHHHH-HHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECC
Confidence 3346777887765443211 01111111234455555 67799999876 33 234556666777999999832
Q ss_pred CcChHHHHHHHHHHHHhcCCCeE
Q 012429 129 SPLREIRRCKDKICNRVSDSVTI 151 (464)
Q Consensus 129 ~p~~~~~~rd~~v~~~l~~~v~~ 151 (464)
-...+.+.|.+++.+.+ |+..
T Consensus 99 i~s~yqr~r~e~vc~~~--gl~~ 119 (237)
T 3rjz_A 99 LASKYQRKRIEKVAKEL--GLEV 119 (237)
T ss_dssp --CCSHHHHHHHHHHHT--TCEE
T ss_pred cchHHHHHHHHHHHHHc--CCEE
Confidence 11222356666666555 5554
No 38
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=49.56 E-value=26 Score=31.95 Aligned_cols=77 Identities=16% Similarity=0.000 Sum_probs=54.6
Q ss_pred CCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEE--EEeCCccchHHHH
Q 012429 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFF--LFQGEAEDNIPNF 115 (464)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~--v~~G~~~~~l~~l 115 (464)
|..-....+|..|...|...+.+|..+++.++.. -..+.+.++.+.| ++.|++.. +..|++.+.|.+.
T Consensus 162 d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~---------~~~~~l~~~~~~l-~~~~~~~~~~~~~g~~~~~i~~~ 231 (268)
T 3ab8_A 162 DASESAVRALHALAPLARALGLGVRVVSVHEDPA---------RAEAWALEAEAYL-RDHGVEASALVLGGDAADHLLRL 231 (268)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH---------HHHHHHHHHHHHH-HHTTCCEEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH---------HHHHHHHHHHHHH-HHcCCceEEEEeCCChHHHHHHH
Confidence 5544455678888777766677899999987631 1234677888888 88887654 4568898888888
Q ss_pred HHHhCccEEEE
Q 012429 116 VRECGASLLVT 126 (464)
Q Consensus 116 ~~~~~~~~V~~ 126 (464)
+++. +-|+.
T Consensus 232 a~~~--dliV~ 240 (268)
T 3ab8_A 232 QGPG--DLLAL 240 (268)
T ss_dssp CCTT--EEEEE
T ss_pred HHhC--CEEEE
Confidence 8876 66665
No 39
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=44.47 E-value=24 Score=31.08 Aligned_cols=43 Identities=14% Similarity=-0.017 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEE
Q 012429 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126 (464)
Q Consensus 83 ~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~ 126 (464)
..++.++-+.| ++.|+++.|..+.+...+..+++..++..++.
T Consensus 94 ~~g~~~~l~~l-~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~ 136 (232)
T 3fvv_A 94 TVQAVDVVRGH-LAAGDLCALVTATNSFVTAPIARAFGVQHLIA 136 (232)
T ss_dssp CHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEE
Confidence 56777788888 88888888888888778888888888876654
No 40
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=39.10 E-value=74 Score=27.85 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=33.8
Q ss_pred HHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCc
Q 012429 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (464)
Q Consensus 91 ~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p 130 (464)
+.| ++.|+++.|..|++...+..++++.++..++....|
T Consensus 62 ~~L-~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~k~ 100 (195)
T 3n07_A 62 KAL-MNAGIEIAIITGRRSQIVENRMKALGISLIYQGQDD 100 (195)
T ss_dssp HHH-HHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSCSS
T ss_pred HHH-HHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCCCC
Confidence 567 889999999999999999999999999988876544
No 41
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=38.42 E-value=71 Score=29.22 Aligned_cols=78 Identities=9% Similarity=-0.027 Sum_probs=44.4
Q ss_pred HHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC-----CccchHHHHHHHhCc
Q 012429 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG-----EAEDNIPNFVRECGA 121 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G-----~~~~~l~~l~~~~~~ 121 (464)
+..+++.|.+.|.+.+.++...+.........+..+.++|+.+.+.. ++.|+.|.+..- ...+.+.+++++.+-
T Consensus 86 ~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lE~~~~~~~~~~~~~~~l~~~~~~ 164 (286)
T 3dx5_A 86 CEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELF-AQHNMYVLLETHPNTLTDTLPSTLELLGEVDH 164 (286)
T ss_dssp HHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHH-HHTTCEEEEECCTTSTTSSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHH-HHhCCEEEEecCCCcCcCCHHHHHHHHHhcCC
Confidence 34455556666777665543221111122344567788888888888 788888776542 223445667776654
Q ss_pred cEEE
Q 012429 122 SLLV 125 (464)
Q Consensus 122 ~~V~ 125 (464)
..|-
T Consensus 165 ~~vg 168 (286)
T 3dx5_A 165 PNLK 168 (286)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 4443
No 42
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=37.65 E-value=1.5e+02 Score=27.87 Aligned_cols=72 Identities=7% Similarity=0.086 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEeCC--cc---chHHHHHHH-hCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEe
Q 012429 81 FMLRGLRLLQRNIEETFQILFFLFQGE--AE---DNIPNFVRE-CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEV 154 (464)
Q Consensus 81 Fl~esL~~L~~~L~~~~G~~L~v~~G~--~~---~~l~~l~~~-~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~ 154 (464)
|..+-+..+++.+ +++|..+.+...+ +. +.+..++.. .+++.|++..+... -...+++..+.||++..+
T Consensus 18 f~~~~~~g~~~~a-~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~----~~~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 18 FWVSYSQFMQAAA-RDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYV----APQILRLSQGSGIKLFIV 92 (350)
T ss_dssp HHHHHHHHHHHHH-HHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSH----HHHHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHH-HHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhh----HHHHHHHHHhCCCcEEEE
Confidence 6667777788888 8889999887643 22 345556665 68999988532221 123344433579999998
Q ss_pred eCC
Q 012429 155 DAH 157 (464)
Q Consensus 155 ~~~ 157 (464)
+..
T Consensus 93 ~~~ 95 (350)
T 3h75_A 93 NSP 95 (350)
T ss_dssp ESC
T ss_pred cCC
Confidence 754
No 43
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=37.64 E-value=92 Score=26.91 Aligned_cols=42 Identities=7% Similarity=0.024 Sum_probs=35.2
Q ss_pred HHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcCh
Q 012429 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (464)
Q Consensus 90 ~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~ 132 (464)
-+.| ++.|+++.+..+++...+..+++..++..++...-|..
T Consensus 55 l~~L-~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~kpk~ 96 (191)
T 3n1u_A 55 LKLL-MAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQVDKR 96 (191)
T ss_dssp HHHH-HHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSCSSCH
T ss_pred HHHH-HHCCCeEEEEeCcChHHHHHHHHHcCCccceeCCCChH
Confidence 4567 88899999999999999999999999998877654543
No 44
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=36.81 E-value=99 Score=26.21 Aligned_cols=40 Identities=5% Similarity=0.082 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCc
Q 012429 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (464)
Q Consensus 89 L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p 130 (464)
+=+.| ++.|+++.|..|++...+..+++..++. ++....|
T Consensus 47 ~l~~L-~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~~~ 86 (176)
T 3mmz_A 47 GIAAL-RKSGLTMLILSTEQNPVVAARARKLKIP-VLHGIDR 86 (176)
T ss_dssp HHHHH-HHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESCSC
T ss_pred HHHHH-HHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCCCC
Confidence 56778 8899999999999999999999999999 5554433
No 45
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=36.30 E-value=91 Score=25.71 Aligned_cols=42 Identities=10% Similarity=-0.051 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcC
Q 012429 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131 (464)
Q Consensus 89 L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~ 131 (464)
+-+.| ++.|+++.+..|.+......+++..++..++....|.
T Consensus 39 ~l~~l-~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~kpk 80 (164)
T 3e8m_A 39 GIFWA-HNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGVVDK 80 (164)
T ss_dssp HHHHH-HHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSCSCH
T ss_pred HHHHH-HHCCCEEEEEeCCChHHHHHHHHHcCCCEeecccCCh
Confidence 45677 8889999999999989999999999999887765443
No 46
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=36.23 E-value=1.3e+02 Score=25.70 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHh----hcCCcEEEEeCCccchHHHHHHHh--CccEEEEc---CCcChHHHHHHHHHHHHhcCCCeEEEe
Q 012429 84 RGLRLLQRNIEE----TFQILFFLFQGEAEDNIPNFVREC--GASLLVTD---FSPLREIRRCKDKICNRVSDSVTIHEV 154 (464)
Q Consensus 84 esL~~L~~~L~~----~~G~~L~v~~G~~~~~l~~l~~~~--~~~~V~~~---~~p~~~~~~rd~~v~~~l~~~v~~~~~ 154 (464)
.+|.++.+.| + ++|+.+.+++.+.+..|-+.+.+. +++.|+.| ++-.+. ...++++....-++++.++
T Consensus 29 ~Tl~di~~~l-~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv--AlrDAl~~l~~~~~P~VEV 105 (151)
T 3u80_A 29 QDLDTLRKLC-AEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSY--ALADAAHMVIDENLPLMEV 105 (151)
T ss_dssp HHHHHHHHHH-HHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCH--HHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHH-HHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhH--HHHHHHHHHhhcCCCEEEE
Confidence 3555555555 4 368999999988776665554432 46778886 332332 2223433222247999999
Q ss_pred eCCeeEeCc
Q 012429 155 DAHNVVPVW 163 (464)
Q Consensus 155 ~~~~l~~~~ 163 (464)
+-+.++..+
T Consensus 106 HiSNi~aRE 114 (151)
T 3u80_A 106 HISNPSARD 114 (151)
T ss_dssp ESSCCC---
T ss_pred EcCCccccc
Confidence 877766543
No 47
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=36.18 E-value=42 Score=25.37 Aligned_cols=58 Identities=14% Similarity=0.305 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhcCCcEEEEe-CCccchHHHH---HHHhCccEEEE-cCCcChHHHHHHHHHHHHhc
Q 012429 84 RGLRLLQRNIEETFQILFFLFQ-GEAEDNIPNF---VRECGASLLVT-DFSPLREIRRCKDKICNRVS 146 (464)
Q Consensus 84 esL~~L~~~L~~~~G~~L~v~~-G~~~~~l~~l---~~~~~~~~V~~-~~~p~~~~~~rd~~v~~~l~ 146 (464)
+-++++-++. +.-|-+|+++. |.....+.++ +++.|++-=+. ..+|. +..++|++.++
T Consensus 38 qdirdiiksm-kdngkplvvfvngasqndvnefqneakkegvsydvlkstdpe----eltqrvreflk 100 (112)
T 2lnd_A 38 QDIRDIIKSM-KDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPE----ELTQRVREFLK 100 (112)
T ss_dssp HHHHHHHHHH-TTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHH----HHHHHHHHHHH
T ss_pred hhHHHHHHHH-HhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHH----HHHHHHHHHHH
Confidence 4678888889 99999998876 5444444444 45556654333 34443 23467777775
No 48
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=35.19 E-value=1.1e+02 Score=28.05 Aligned_cols=79 Identities=9% Similarity=-0.013 Sum_probs=51.3
Q ss_pred HHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCC-----ccchHHHHHHHhCc
Q 012429 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE-----AEDNIPNFVRECGA 121 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~-----~~~~l~~l~~~~~~ 121 (464)
+..+++.|.+.|.+++.+...++..-......+..+.++|+.+.+.. ++.|+.|.+..-. ..+.+.+++++.+-
T Consensus 110 ~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lEn~~~~~~~~~~~~~~l~~~v~~ 188 (295)
T 3cqj_A 110 MRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMA-SRAQVTLAMEIMDYPLMNSISKALGYAHYLNN 188 (295)
T ss_dssp HHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHH-HHHTCEEEEECCSSGGGCSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHH-HHhCCEEEEeeCCCcccCCHHHHHHHHHhcCC
Confidence 55666667778888775543322111123445678899999999999 9999998876422 33556677887765
Q ss_pred cEEEE
Q 012429 122 SLLVT 126 (464)
Q Consensus 122 ~~V~~ 126 (464)
..|-+
T Consensus 189 ~~vg~ 193 (295)
T 3cqj_A 189 PWFQL 193 (295)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 55544
No 49
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=33.80 E-value=1.1e+02 Score=28.59 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhhc-----CCcEEEEeCCccchHHHHHHHhCccEEEEc-----CCcChHHHHHHHHHHHHhc-C
Q 012429 79 LGFMLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVTD-----FSPLREIRRCKDKICNRVS-D 147 (464)
Q Consensus 79 ~~Fl~esL~~L~~~L~~~~-----G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~-----~~p~~~~~~rd~~v~~~l~-~ 147 (464)
..=+.+.|.+|++++ ++. +..+++.+ +.+..|++.+|+..+... .+|.. +...++.+.++ .
T Consensus 156 ~~~~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik~~ 227 (286)
T 3gi1_A 156 AKAFKKEAEQLTEEY-TQKFKKVRSKTFVTQH----TAFSYLAKRFGLKQLGISGISPEQEPSP---RQLKEIQDFVKEY 227 (286)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTTCSCCEEEEEE----SCCHHHHHHTTCEEEEEECSCC---CCH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-HHHHhcCCCCEEEEEC----CchHHHHHHCCCeEeeccccCCCCCCCH---HHHHHHHHHHHHc
Confidence 344556677777776 442 44555555 578899999999987652 24543 33456666665 7
Q ss_pred CCeEEEee
Q 012429 148 SVTIHEVD 155 (464)
Q Consensus 148 ~v~~~~~~ 155 (464)
+|++..++
T Consensus 228 ~v~~if~e 235 (286)
T 3gi1_A 228 NVKTIFAE 235 (286)
T ss_dssp TCCEEEEC
T ss_pred CCCEEEEe
Confidence 89887764
No 50
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=33.77 E-value=96 Score=27.51 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCC
Q 012429 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS 129 (464)
Q Consensus 89 L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~ 129 (464)
+=+.| ++.|+++.|..|++...+..+++..++..++....
T Consensus 84 ~L~~L-~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~k 123 (211)
T 3ij5_A 84 GIRCL-ITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQS 123 (211)
T ss_dssp HHHHH-HHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCS
T ss_pred HHHHH-HHCCCEEEEEeCCCHHHHHHHHHHcCCchhhcccC
Confidence 56778 88999999999999999999999999998887653
No 51
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=33.53 E-value=1e+02 Score=26.46 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=34.3
Q ss_pred HHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcC
Q 012429 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128 (464)
Q Consensus 89 L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~ 128 (464)
+=+.| ++.|+++.+..|++...+..+++..++..++...
T Consensus 54 ~l~~L-~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~ 92 (189)
T 3mn1_A 54 GIKML-IASGVTTAIISGRKTAIVERRAKSLGIEHLFQGR 92 (189)
T ss_dssp HHHHH-HHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSC
T ss_pred HHHHH-HHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCc
Confidence 55678 8899999999999999999999999999888754
No 52
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=33.34 E-value=1.6e+02 Score=23.56 Aligned_cols=52 Identities=15% Similarity=0.306 Sum_probs=29.1
Q ss_pred EEEeCCccchHHHHHHH---hCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEeeC
Q 012429 102 FLFQGEAEDNIPNFVRE---CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDA 156 (464)
Q Consensus 102 ~v~~G~~~~~l~~l~~~---~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~~ 156 (464)
+++..+| ++|.+++++ .|+..|..--+-. +.+|.+++.+.-+.|+.+..+.+
T Consensus 6 vvfssdp-eilkeivreikrqgvrvvllysdqd--ekrrrerleefekqgvdvrtved 60 (162)
T 2l82_A 6 VVFSSDP-EILKEIVREIKRQGVRVVLLYSDQD--EKRRRERLEEFEKQGVDVRTVED 60 (162)
T ss_dssp EEEESCH-HHHHHHHHHHHHTTCEEEEEECCSC--HHHHHHHHHHHHTTTCEEEECCS
T ss_pred EEecCCH-HHHHHHHHHHHhCCeEEEEEecCch--HHHHHHHHHHHHHcCCceeeecc
Confidence 3444444 577777654 3555443321111 34556777776567888887753
No 53
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=33.13 E-value=1.1e+02 Score=29.07 Aligned_cols=68 Identities=9% Similarity=0.058 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhhc-------CCcEEEEeCCccchHHHHHHHhCccEEEEc-----CCcChHHHHHHHHHHHHhc-
Q 012429 80 GFMLRGLRLLQRNIEETF-------QILFFLFQGEAEDNIPNFVRECGASLLVTD-----FSPLREIRRCKDKICNRVS- 146 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~-------G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~-----~~p~~~~~~rd~~v~~~l~- 146 (464)
.=+.+-|.+|++++ ++. +..+++.+ +.+..|++.+|...+... .+|.. +...++.+.++
T Consensus 173 ~~~~~~L~~Ld~~~-~~~l~~~~~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik~ 244 (313)
T 1toa_A 173 QAYQQQLDKLDAYV-RRKAQSLPAERRVLVTAH----DAFGYFSRAYGFEVKGLQGVSTASEASA---HDMQELAAFIAQ 244 (313)
T ss_dssp HHHHHHHHHHHHHH-HHHHHTSCGGGCEEEEEE----SCCHHHHHHHTCEEEEEECSSCSSCCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHhhCCccCCEEEEEC----CcHHHHHHHCCCeEEEeeccCCCCCCCH---HHHHHHHHHHHH
Confidence 34455666666665 332 44566655 478899999999987652 34554 33456666665
Q ss_pred CCCeEEEee
Q 012429 147 DSVTIHEVD 155 (464)
Q Consensus 147 ~~v~~~~~~ 155 (464)
.+|++..++
T Consensus 245 ~~v~~If~e 253 (313)
T 1toa_A 245 RKLPAIFIE 253 (313)
T ss_dssp TTCSEEEEE
T ss_pred cCCCEEEEe
Confidence 788887764
No 54
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=32.65 E-value=74 Score=26.67 Aligned_cols=72 Identities=11% Similarity=-0.083 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhcCCcEE---EEeCCccchHHHHHHHhC--ccEEEEcCCcChHHHHHHHHHHHHhc-CCCeEEEe
Q 012429 82 MLRGLRLLQRNIEETFQILFF---LFQGEAEDNIPNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEV 154 (464)
Q Consensus 82 l~esL~~L~~~L~~~~G~~L~---v~~G~~~~~l~~l~~~~~--~~~V~~~~~p~~~~~~rd~~v~~~l~-~~v~~~~~ 154 (464)
--+.|..--+.| ++.|+... +..++|...|.+.+.+++ ++.|+....|...+.-....+.+... .|+++.-+
T Consensus 56 A~~~l~~sl~aL-~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~DwasrAr~~gvPVlhl 133 (138)
T 2iel_A 56 AEEEAAAAKRAL-EAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAERFGLPVIHV 133 (138)
T ss_dssp HHHHHHHHHHHH-HTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTTHHHHGGGGSSCEEEE
T ss_pred HHHHHHHHHHHH-HHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhccHHHHHHhcCCCEEEE
Confidence 345666666777 88888766 778899999999999999 99999854453322222223333332 37887554
No 55
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=32.20 E-value=1.5e+02 Score=28.17 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhhc-------CCcEEEEeCCccchHHHHHHHhCccEEEEc-----CCcChHHHHHHHHHHHHhc
Q 012429 79 LGFMLRGLRLLQRNIEETF-------QILFFLFQGEAEDNIPNFVRECGASLLVTD-----FSPLREIRRCKDKICNRVS 146 (464)
Q Consensus 79 ~~Fl~esL~~L~~~L~~~~-------G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~-----~~p~~~~~~rd~~v~~~l~ 146 (464)
..=+.+-|.+|++++ ++. +-.+++.+ +.+..|++.+|...+... .+|.. +...++.+.++
T Consensus 165 a~~~~~~L~~Ld~~~-~~~l~~~p~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~i~~~~ePs~---~~l~~l~~~ik 236 (307)
T 3ujp_A 165 AAVYSEQLKAIDRQL-GADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFTP---KQVQTVIEEVK 236 (307)
T ss_dssp HHHHHHHHHHHHHHH-HHHHSSSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSCCSSCCCH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHhhccccCCEEEEEC----chHHHHHHHCCCcEEEeeccCCCCCCCH---HHHHHHHHHHH
Confidence 344556677777777 542 23344444 478999999999987652 34543 33456666665
Q ss_pred -CCCeEEEee
Q 012429 147 -DSVTIHEVD 155 (464)
Q Consensus 147 -~~v~~~~~~ 155 (464)
.+|++..++
T Consensus 237 ~~~v~~If~e 246 (307)
T 3ujp_A 237 TNNVPTIFCE 246 (307)
T ss_dssp TTTCSEEEEE
T ss_pred hcCCcEEEEe
Confidence 789887774
No 56
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.75 E-value=1.6e+02 Score=26.76 Aligned_cols=72 Identities=7% Similarity=0.089 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCC---ccchHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEeeC
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGE---AEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDA 156 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~---~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~~ 156 (464)
.|..+-+..+++.+ ++.|..+.+...+ ....+.+++...+++.|++....... ..+....+.|++++.++.
T Consensus 23 ~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-----~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 23 STFLEMISWIGIEL-GKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-----FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHH-HHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC-----HHHHHHHHTTCCEEEESC
T ss_pred hhHHHHHHHHHHHH-HHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh-----HHHHHHHhCCCCEEEECC
Confidence 47777888889999 9999999887643 22345556667799999884321111 123222236899998876
Q ss_pred C
Q 012429 157 H 157 (464)
Q Consensus 157 ~ 157 (464)
.
T Consensus 97 ~ 97 (294)
T 3qk7_A 97 S 97 (294)
T ss_dssp C
T ss_pred C
Confidence 4
No 57
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=29.88 E-value=1.4e+02 Score=25.38 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=34.6
Q ss_pred HHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcC
Q 012429 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131 (464)
Q Consensus 89 L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~ 131 (464)
+=+.| ++.|+++.+..|.+...+..+++..++..++....|.
T Consensus 61 ~l~~L-~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~kpk 102 (188)
T 2r8e_A 61 GIRCA-LTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNK 102 (188)
T ss_dssp HHHHH-HTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCSCS
T ss_pred HHHHH-HHCCCeEEEEeCCChHHHHHHHHHcCCceeecCCCCC
Confidence 45667 8889999999999988899999999999877654444
No 58
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=29.64 E-value=1.4e+02 Score=27.91 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhc-----CCcEEEEeCCccchHHHHHHHhCccEEEEc-----CCcChHHHHHHHHHHHHhc-CC
Q 012429 80 GFMLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVTD-----FSPLREIRRCKDKICNRVS-DS 148 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~-----G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~-----~~p~~~~~~rd~~v~~~l~-~~ 148 (464)
.=+.+-|.+|++++ ++. +..+++.+ +.+..|++.+|...+... .+|.. ++..++.+.++ .+
T Consensus 155 ~~~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik~~~ 226 (284)
T 3cx3_A 155 QAFIKKAQELTKKF-QPKFEKATQKTFVTQH----TAFSYLAKRFGLNQLGIAGISPEQEPSP---RQLTEIQEFVKTYK 226 (284)
T ss_dssp HHHHHHHHHHHHHH-HHHHHSCSCCCEEEEE----SCCHHHHHHTTCCEEEEECSSTTCCCCS---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH-HHHHhcCCCCEEEEEC----CchHHHHHHcCCEEeeccCCCCCCCCCH---HHHHHHHHHHHHcC
Confidence 33455666666665 432 45566655 478899999999988662 34554 23456666665 78
Q ss_pred CeEEEee
Q 012429 149 VTIHEVD 155 (464)
Q Consensus 149 v~~~~~~ 155 (464)
|++..++
T Consensus 227 v~~if~e 233 (284)
T 3cx3_A 227 VKTIFTE 233 (284)
T ss_dssp CCCEEEC
T ss_pred CCEEEEe
Confidence 8877664
No 59
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=29.45 E-value=1.2e+02 Score=28.29 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhc-----CCcEEEEeCCccchHHHHHHHhCccEEEE-----cCCcChHHHHHHHHHHHHhc-CC
Q 012429 80 GFMLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVT-----DFSPLREIRRCKDKICNRVS-DS 148 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~-----G~~L~v~~G~~~~~l~~l~~~~~~~~V~~-----~~~p~~~~~~rd~~v~~~l~-~~ 148 (464)
.=+.+-|..|++++ ++. +..+++.+ +.+..|++.+|...+.. +.+|.. ++.+++.+.++ .+
T Consensus 152 ~~~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik~~~ 223 (284)
T 2prs_A 152 KDFEAQLASTETQV-GNELAPLKGKGYFVFH----DAYGYFEKQFGLTPLGHFTVNPEIQPGA---QRLHEIRTQLVEQK 223 (284)
T ss_dssp HHHHHHHHHHHHHH-HHHHGGGTTCCEEEEE----SCCHHHHHHHTCCCCEEEESSTTSCCCH---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH-HHHHhcCCCCeEEEEC----ccHHHHHHHCCCeEeEeeccCCCCCCCH---HHHHHHHHHHHHcC
Confidence 33445566666655 332 45566655 47889999999987654 234554 33456666665 78
Q ss_pred CeEEEee
Q 012429 149 VTIHEVD 155 (464)
Q Consensus 149 v~~~~~~ 155 (464)
|++..++
T Consensus 224 v~~if~e 230 (284)
T 2prs_A 224 ATCVFAE 230 (284)
T ss_dssp CCEEEEC
T ss_pred CCEEEEe
Confidence 9887764
No 60
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=29.19 E-value=1.1e+02 Score=26.49 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=40.9
Q ss_pred hhcCCcEEEEeCCccchHHHHHHH--hCccEEEEcC---CcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCc
Q 012429 95 ETFQILFFLFQGEAEDNIPNFVRE--CGASLLVTDF---SPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVW 163 (464)
Q Consensus 95 ~~~G~~L~v~~G~~~~~l~~l~~~--~~~~~V~~~~---~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~ 163 (464)
.++|+.+.+++.+.+..|-+.+.+ -+++.|+.|. +-.+ -++++++. -++++.+++-+.++..+
T Consensus 67 ~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtS------vAlrDAL~~v~~P~VEVHiSNihaRE 135 (172)
T 3n8k_A 67 AELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTS------VALRDACAELSAPLIEVHISNVHARE 135 (172)
T ss_dssp HHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTC------HHHHHHHTTCCSCEEEEESSCTTSSC
T ss_pred HHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhh------HHHHHHHHhCCCCEEEEEcCCchhcc
Confidence 447999999998877666555443 2477788873 2222 14445454 57999999876665443
No 61
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=29.06 E-value=2.6e+02 Score=25.00 Aligned_cols=73 Identities=10% Similarity=0.122 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCC--cc---chHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEe
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGE--AE---DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEV 154 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~--~~---~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~ 154 (464)
.|..+-+..+++.+ ++.|..+.+...+ +. +.+..+ ...+++.|++...... ..+..++...+.||++..+
T Consensus 18 ~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~---~~~~~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 18 DWDLKAYQAQIAEI-ERLGGTAIALDAGRNDQTQVSQIQTL-IAQKPDAIIEQLGNLD---VLNPWLQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHHHHHHHHH-HHTTCEEEEEECTTCHHHHHHHHHHH-HHHCCSEEEEESSCHH---HHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHH-HHcCCEEEEEcCCCCHHHHHHHHHHH-HHcCCCEEEEeCCChh---hhHHHHHHHHHCCCcEEEe
Confidence 46677788888999 9999999887632 22 223333 3458999987532211 1123444433479999988
Q ss_pred eCC
Q 012429 155 DAH 157 (464)
Q Consensus 155 ~~~ 157 (464)
+..
T Consensus 93 ~~~ 95 (291)
T 3l49_A 93 DTA 95 (291)
T ss_dssp SCC
T ss_pred cCC
Confidence 754
No 62
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=29.03 E-value=2.5e+02 Score=25.10 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCCc--cc--hHHHHHHHhCccEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEee
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGEA--ED--NIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVD 155 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~~--~~--~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~v~~~~~~ 155 (464)
.|..+-+..+++.+ ++.|..+.+...+. .. .+.+.+...+++.|++..... +..++...+.|+++..++
T Consensus 20 ~~~~~~~~gi~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 20 YFSTELFKGISSIL-ESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN------PQTVQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHHHHHHHHHHH-HTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC------HHHHHHHHTTSSCEEEES
T ss_pred hHHHHHHHHHHHHH-HHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc------HHHHHHHHHCCCCEEEEe
Confidence 36777788888999 99999998876432 11 122333456899998853222 133433334689998886
Q ss_pred CC
Q 012429 156 AH 157 (464)
Q Consensus 156 ~~ 157 (464)
..
T Consensus 93 ~~ 94 (276)
T 3jy6_A 93 RE 94 (276)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 63
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=28.88 E-value=1.7e+02 Score=27.94 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhh-c------CCcEEEEeCCccchHHHHHHHhCccEEEEc-----CCcChHHHHHHHHHHHHhc-
Q 012429 80 GFMLRGLRLLQRNIEET-F------QILFFLFQGEAEDNIPNFVRECGASLLVTD-----FSPLREIRRCKDKICNRVS- 146 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~-~------G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~-----~~p~~~~~~rd~~v~~~l~- 146 (464)
.=+.+-|.+|++++ ++ + +-.+++.+ +.+..|++.+|...+... .+|.. +...++.+.++
T Consensus 180 ~~~~~~L~~Ld~~~-~~~l~~~~~~~r~~v~~H----~af~Yfa~~yGL~~~~~~~~~~~~eps~---~~l~~l~~~ik~ 251 (321)
T 1xvl_A 180 AVYSEQLKAIDRQL-GADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFTP---KQVQTVIEEVKT 251 (321)
T ss_dssp HHHHHHHHHHHHHH-HHHHTTSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSSSSCSCCH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HHHHhhCcccCCEEEEEC----chHHHHHHHCCCeEEEeeccCCCCCCCH---HHHHHHHHHHHH
Confidence 33455667777666 43 2 33466555 578999999999987652 34554 33456666665
Q ss_pred CCCeEEEee
Q 012429 147 DSVTIHEVD 155 (464)
Q Consensus 147 ~~v~~~~~~ 155 (464)
.+|++..++
T Consensus 252 ~~v~~If~e 260 (321)
T 1xvl_A 252 NNVPTIFCE 260 (321)
T ss_dssp TTCSEEEEE
T ss_pred cCCcEEEEe
Confidence 789887764
No 64
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=28.64 E-value=2.4e+02 Score=22.93 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcC
Q 012429 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131 (464)
Q Consensus 87 ~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~ 131 (464)
.++=+.| ++.|+++.+..+.+...+..+++..++..++....|.
T Consensus 42 ~~~l~~l-~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~kp~ 85 (162)
T 2p9j_A 42 GIGIKLL-QKMGITLAVISGRDSAPLITRLKELGVEEIYTGSYKK 85 (162)
T ss_dssp HHHHHHH-HTTTCEEEEEESCCCHHHHHHHHHTTCCEEEECC--C
T ss_pred HHHHHHH-HHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccCCCCC
Confidence 3555667 8889999999999988899999999998766543343
No 65
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=28.13 E-value=1.3e+02 Score=25.97 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhh------cCCcEEEEeCCccchHHHHHHH---hCccEEEEcC---CcChHHHHHHHHHHHHhc-CCCeE
Q 012429 85 GLRLLQRNIEET------FQILFFLFQGEAEDNIPNFVRE---CGASLLVTDF---SPLREIRRCKDKICNRVS-DSVTI 151 (464)
Q Consensus 85 sL~~L~~~L~~~------~G~~L~v~~G~~~~~l~~l~~~---~~~~~V~~~~---~p~~~~~~rd~~v~~~l~-~~v~~ 151 (464)
+|.++.+.| ++ +|+.+.+++.+.+..|-+.+.+ -+++.|+.|. +-.+ . ++++.+. -++++
T Consensus 40 TL~di~~~l-~~~a~~~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtS--v----AlrDAL~~v~~P~ 112 (167)
T 3kip_A 40 SLSDIEQAA-IEQAKLKNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTS--V----GIRDALLGTAIPF 112 (167)
T ss_dssp CHHHHHHHH-HHHHHHTCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTC--H----HHHHHHHHTTCCE
T ss_pred CHHHHHHHH-HHHhccccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEccccceecc--H----HHHHHHHhcCCCE
Confidence 445555554 33 5789999998877666655543 3588899873 2233 2 3333332 47999
Q ss_pred EEeeCCeeEeCc
Q 012429 152 HEVDAHNVVPVW 163 (464)
Q Consensus 152 ~~~~~~~l~~~~ 163 (464)
.+++-+.+...+
T Consensus 113 VEVHiSNihaRE 124 (167)
T 3kip_A 113 IEVHITNVHQRE 124 (167)
T ss_dssp EEEESSCGGGSC
T ss_pred EEEEcCCccccc
Confidence 999877766544
No 66
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=28.06 E-value=1.9e+02 Score=24.58 Aligned_cols=64 Identities=11% Similarity=0.176 Sum_probs=40.6
Q ss_pred hhcCCcEEEEeCCccchHHHHHHHh--CccEEEEcC---CcChHHHHHHHHHHHHhcCCCeEEEeeCCeeEeCc
Q 012429 95 ETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDF---SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVW 163 (464)
Q Consensus 95 ~~~G~~L~v~~G~~~~~l~~l~~~~--~~~~V~~~~---~p~~~~~~rd~~v~~~l~~~v~~~~~~~~~l~~~~ 163 (464)
.++|+.+.+++.+.+..|-+.+.+. +++.|+.|. +-.+ ....++++. -++++.+++-+.++..+
T Consensus 46 ~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtS--vAlrDAl~~---~~~P~VEVHiSNi~aRE 114 (153)
T 3lwz_A 46 QGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTS--VALRDALLG---VQIPFIEIHLSNVHARE 114 (153)
T ss_dssp HHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTC--HHHHHHHHH---HTCCEEEEESSCGGGSC
T ss_pred HHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceech--HHHHHHHHh---cCCCEEEEEcCCccccc
Confidence 3469999999988877766655543 578888873 2233 222233433 26899999876665543
No 67
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=27.44 E-value=1.3e+02 Score=27.00 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=50.6
Q ss_pred HHHHHHHhhhCCCCEEEEEEecCCccc--cchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe--CCccchHHHHHHHhCcc
Q 012429 47 LIHAVDQANKNNVPVAVAFNLFDQFLG--AKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--GEAEDNIPNFVRECGAS 122 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~--~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--G~~~~~l~~l~~~~~~~ 122 (464)
+..+++.|.+.|.+.+.+..-...... .....+..+.++|+.+.+.. ++.|+.+.+.. +...+.+.+++++.+ .
T Consensus 78 ~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gv~l~lEn~~~~~~~~~~~l~~~v~-~ 155 (254)
T 3ayv_A 78 LLFGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRA-RTLGVRLLLENSHEPHPEALRPVLEAHA-G 155 (254)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHH-HHHTCEEEEECSSCSSGGGTHHHHHHHT-T
T ss_pred HHHHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHH-hhcCCEEEEcCCCCCCHHHHHHHHHhcC-c
Confidence 455666677788887755432211100 12344678899999999999 89999998764 334456677888877 4
Q ss_pred EEEE
Q 012429 123 LLVT 126 (464)
Q Consensus 123 ~V~~ 126 (464)
.|-+
T Consensus 156 ~vg~ 159 (254)
T 3ayv_A 156 ELGF 159 (254)
T ss_dssp SSEE
T ss_pred CEEE
Confidence 4433
No 68
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=27.15 E-value=1e+02 Score=28.92 Aligned_cols=61 Identities=7% Similarity=0.018 Sum_probs=50.5
Q ss_pred EEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCCccc--hHHHHHHHhCccEE
Q 012429 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED--NIPNFVRECGASLL 124 (464)
Q Consensus 63 ~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~--~l~~l~~~~~~~~V 124 (464)
.+|+.|....+.|.+....+.+-+.+.-+.| .+.|.+++|+-.+... .+.+|.+.+++--|
T Consensus 52 ~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L-~~~g~d~IVIACNTa~~~al~~lr~~~~iPvi 114 (274)
T 3uhf_A 52 IIYYGDTARVPYGVKDKDTIIKFCLEALDFF-EQFQIDMLIIACNTASAYALDALRAKAHFPVY 114 (274)
T ss_dssp EEEEECTTTCCCTTSCHHHHHHHHHHHHHHH-TTSCCSEEEECCHHHHHHSHHHHHHHCSSCEE
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEeCCChhHHHHHHHHHhcCCCEE
Confidence 4799998888888888899999998888999 9999999999887765 36777777776544
No 69
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=26.65 E-value=1.4e+02 Score=28.30 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhhc-----CCcEEEEeCCccchHHHHHHHhCccEEEEc-----CCcChHHHHHHHHHHHHhc-C
Q 012429 79 LGFMLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVTD-----FSPLREIRRCKDKICNRVS-D 147 (464)
Q Consensus 79 ~~Fl~esL~~L~~~L~~~~-----G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~-----~~p~~~~~~rd~~v~~~l~-~ 147 (464)
..=+.+-|.+|++++ ++. +-.+++.+ +.+..|++.+|...+... .+|.. ++..++.+.++ .
T Consensus 167 ~~~~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik~~ 238 (312)
T 2o1e_A 167 SKEYIAKLQDLDKLY-RTTAKKAEKKEFITQH----TAFGYLAKEYGLKQVPIAGLSPDQEPSA---ASLAKLKTYAKEH 238 (312)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHSCSCCEEEESS----CTTHHHHHHTTCEEEECSSCCSSSCCCH---HHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHH-HHHhhccCCCEEEEEC----CchHHHHHHCCCeEEEeeccCCCCCCCH---HHHHHHHHHHHHc
Confidence 334555666666665 432 33444433 478999999999988652 34554 34466777675 7
Q ss_pred CCeEEEee
Q 012429 148 SVTIHEVD 155 (464)
Q Consensus 148 ~v~~~~~~ 155 (464)
+|++..++
T Consensus 239 ~v~~If~e 246 (312)
T 2o1e_A 239 NVKVIYFE 246 (312)
T ss_dssp CCCEEECS
T ss_pred CCCEEEEe
Confidence 88887664
No 70
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=26.50 E-value=29 Score=20.05 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHHHhcc
Q 012429 363 DPLWNASQMEMVYNGK 378 (464)
Q Consensus 363 ~PiVDAaMRqL~~TGw 378 (464)
-.||||.++|.+..|=
T Consensus 8 ~RIVdaVi~qvkasga 23 (26)
T 2drn_C 8 SRIVDAVIEQVKAAGA 23 (26)
T ss_dssp HHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 3689999999998873
No 71
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=26.08 E-value=1.6e+02 Score=26.69 Aligned_cols=70 Identities=9% Similarity=-0.007 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEeCC----ccchHHHHHHHhCccEEEEcC-CcChHHHHHHHHHHHHhcCCCeEEEee
Q 012429 81 FMLRGLRLLQRNIEETFQILFFLFQGE----AEDNIPNFVRECGASLLVTDF-SPLREIRRCKDKICNRVSDSVTIHEVD 155 (464)
Q Consensus 81 Fl~esL~~L~~~L~~~~G~~L~v~~G~----~~~~l~~l~~~~~~~~V~~~~-~p~~~~~~rd~~v~~~l~~~v~~~~~~ 155 (464)
|..+-+..+++.+ ++.|..+.+...+ ....+.+++...+++.|++.. .... ..++...+.|+++..++
T Consensus 24 ~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i~ 96 (288)
T 3gv0_A 24 FTSQMVFGITEVL-STTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND------PRVRFMTERNMPFVTHG 96 (288)
T ss_dssp HHHHHHHHHHHHH-TTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC------HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHH-HHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc------HHHHHHhhCCCCEEEEC
Confidence 7777888888999 9999999887532 123445556667899988742 2111 12322223689998886
Q ss_pred CC
Q 012429 156 AH 157 (464)
Q Consensus 156 ~~ 157 (464)
..
T Consensus 97 ~~ 98 (288)
T 3gv0_A 97 RS 98 (288)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 72
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=25.98 E-value=1.3e+02 Score=27.88 Aligned_cols=62 Identities=0% Similarity=-0.151 Sum_probs=50.4
Q ss_pred EEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCCccc--hHHHHHHHh-CccEEE
Q 012429 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED--NIPNFVREC-GASLLV 125 (464)
Q Consensus 63 ~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~--~l~~l~~~~-~~~~V~ 125 (464)
.+|+.|......|.+....+.+-+.+.-+.| .+.|.+++|+..+... .+..|.+.+ ++--|-
T Consensus 35 ~iy~~D~a~~PYG~~~~~~i~~~~~~~~~~L-~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 35 IIYFGDIARIPYGTKSRATIQKFAAQTAKFL-IDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp EEEEECTTTCCCTTSCHHHHHHHHHHHHHHH-HHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 4789998877888888999999999999999 8999999999877655 457777777 665443
No 73
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=25.91 E-value=1.3e+02 Score=27.14 Aligned_cols=78 Identities=9% Similarity=0.014 Sum_probs=51.8
Q ss_pred HHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEe-------C---CccchHHHHH
Q 012429 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ-------G---EAEDNIPNFV 116 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~-------G---~~~~~l~~l~ 116 (464)
+..+++.|.+.|.+.+.+..-.|.. ......+..+.++|+.+.+.. ++.|+.|.+.. + ...+.+.+++
T Consensus 95 ~~~~i~~A~~lGa~~v~~~~g~~~~-~~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~l~ 172 (269)
T 3ngf_A 95 VDIALHYALALDCRTLHAMSGITEG-LDRKACEETFIENFRYAADKL-APHGITVLVEPLNTRNMPGYFIVHQLEAVGLV 172 (269)
T ss_dssp HHHHHHHHHHTTCCEEECCBCBCTT-SCHHHHHHHHHHHHHHHHHHH-GGGTCEEEECCCCTTTSTTBSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEccCCCCC-CCHHHHHHHHHHHHHHHHHHH-HHcCCEEEEeeCCcccCccchhcCHHHHHHHH
Confidence 5556667777888877553322211 122445778999999999999 99999998863 2 2234566788
Q ss_pred HHhCccEEEE
Q 012429 117 RECGASLLVT 126 (464)
Q Consensus 117 ~~~~~~~V~~ 126 (464)
++.+-..|-+
T Consensus 173 ~~v~~~~vg~ 182 (269)
T 3ngf_A 173 KRVNRPNVAV 182 (269)
T ss_dssp HHHCCTTEEE
T ss_pred HHhCCCCCCe
Confidence 8876655544
No 74
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=25.70 E-value=2.1e+02 Score=28.16 Aligned_cols=51 Identities=8% Similarity=0.141 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHH--------hCccEEEEcCCcC
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRE--------CGASLLVTDFSPL 131 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~--------~~~~~V~~~~~p~ 131 (464)
.-++.++.++=+.| ++.|+++.|..+++.+.+...+++ .++..++....|.
T Consensus 255 g~~ypgv~e~L~~L-k~~Gi~laI~Snn~~~~v~~~l~~~~~~~l~l~~~~~v~~~~KPK 313 (387)
T 3nvb_A 255 GKAFTEFQEWVKKL-KNRGIIIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWENK 313 (387)
T ss_dssp HHHHHHHHHHHHHH-HHTTCEEEEEEESCHHHHHHHHHHCTTCSSCGGGCSEEEEESSCH
T ss_pred cccCHHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHhhccccccCccCccEEEeCCCCc
Confidence 35678899999999 999999999999998888888876 4566665554444
No 75
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=25.63 E-value=2.5e+02 Score=23.51 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcC
Q 012429 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128 (464)
Q Consensus 88 ~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~ 128 (464)
++=+.| ++.|+++.+..|.+...+..+++..++..++...
T Consensus 42 ~~l~~L-~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~ 81 (180)
T 1k1e_A 42 LGIKML-MDADIQVAVLSGRDSPILRRRIADLGIKLFFLGK 81 (180)
T ss_dssp HHHHHH-HHTTCEEEEEESCCCHHHHHHHHHHTCCEEEESC
T ss_pred HHHHHH-HHCCCeEEEEeCCCcHHHHHHHHHcCCceeecCC
Confidence 455567 8889999999999999999999999999877543
No 76
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=24.70 E-value=2.4e+02 Score=25.20 Aligned_cols=76 Identities=14% Similarity=0.024 Sum_probs=40.2
Q ss_pred HHHHHHHhhhCCCCEEEEEEec-CCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCC-------ccchHHHHHHH
Q 012429 47 LIHAVDQANKNNVPVAVAFNLF-DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE-------AEDNIPNFVRE 118 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~d-p~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~-------~~~~l~~l~~~ 118 (464)
+..+++.|.+.|.+.+.+.... +.. ......+..+.++|+.+.+.. ++.|+.+.+..-. ..+.+.++++.
T Consensus 86 ~~~~i~~a~~lG~~~v~~~~g~~~~~-~~~~~~~~~~~~~l~~l~~~a-~~~gv~l~lEn~~~~~~~~~~~~~~~~l~~~ 163 (278)
T 1i60_A 86 FKGMMETCKTLGVKYVVAVPLVTEQK-IVKEEIKKSSVDVLTELSDIA-EPYGVKIALEFVGHPQCTVNTFEQAYEIVNT 163 (278)
T ss_dssp HHHHHHHHHHHTCCEEEEECCBCSSC-CCHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCCTTBSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCC-CCHHHHHHHHHHHHHHHHHHH-HhcCCEEEEEecCCccchhcCHHHHHHHHHH
Confidence 3344455555666665442111 100 011334566777777777777 7778777765421 23445566666
Q ss_pred hCccEE
Q 012429 119 CGASLL 124 (464)
Q Consensus 119 ~~~~~V 124 (464)
.+-..|
T Consensus 164 ~~~~~~ 169 (278)
T 1i60_A 164 VNRDNV 169 (278)
T ss_dssp HCCTTE
T ss_pred hCCCCe
Confidence 654433
No 77
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=24.52 E-value=98 Score=29.12 Aligned_cols=87 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred ecCCccccchhhHHHHHHHHHHHHHHHHhhc-----CCcEEEEeCCccchHHHHHHHhCccEEEEcCCcChHHHHHHHHH
Q 012429 67 LFDQFLGAKARQLGFMLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI 141 (464)
Q Consensus 67 ~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~-----G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v 141 (464)
.||+.-..-..+..=+.+-|..|++++ ++. +..+++.+ +.+..|++.+|...+.....-.....++..++
T Consensus 155 ~dP~~a~~y~~N~~~~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~eps~~~l~~l 229 (291)
T 1pq4_A 155 LDPDNRDQYEANLAAFLAELERLNQEL-GQILQPLPQRKFIVFH----PSWAYFARDYNLVQIPIEVEGQEPSAQELKQL 229 (291)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCSCCEEEESS----CCCHHHHHHTTCEEEESCBTTBCCCHHHHHHH
T ss_pred HCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCCEEEEEC----CchHHHHHHCCCEEeecccCCCCCCHHHHHHH
Q ss_pred HHHhc-CCCeEEEeeCCe
Q 012429 142 CNRVS-DSVTIHEVDAHN 158 (464)
Q Consensus 142 ~~~l~-~~v~~~~~~~~~ 158 (464)
.+.++ .+|++..++...
T Consensus 230 ~~~ik~~~v~~If~e~~~ 247 (291)
T 1pq4_A 230 IDTAKENNLTMVFGETQF 247 (291)
T ss_dssp HHHHHTTTCCEEEEETTS
T ss_pred HHHHHHcCCCEEEEeCCC
No 78
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=24.18 E-value=71 Score=25.04 Aligned_cols=39 Identities=13% Similarity=-0.030 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhC
Q 012429 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG 120 (464)
Q Consensus 81 Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~ 120 (464)
-+..++.++-+.| ++.|+++.+..+.+...+..+++..+
T Consensus 18 ~~~~~~~~~l~~L-~~~G~~~~i~S~~~~~~~~~~l~~~~ 56 (137)
T 2pr7_A 18 EDQRRWRNLLAAA-KKNGVGTVILSNDPGGLGAAPIRELE 56 (137)
T ss_dssp HHHHHHHHHHHHH-HHTTCEEEEEECSCCGGGGHHHHHHH
T ss_pred ccCccHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHCC
Confidence 3567788888889 99999999999877666555555543
No 79
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=24.15 E-value=2.6e+02 Score=24.99 Aligned_cols=77 Identities=12% Similarity=0.061 Sum_probs=48.9
Q ss_pred HHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCC-------------ccchHHH
Q 012429 48 IHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE-------------AEDNIPN 114 (464)
Q Consensus 48 ~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~-------------~~~~l~~ 114 (464)
..+++.|.+.|.+.+.+.+. |.........+..+.++|..+.+.. ++.|+.|.+..-+ ..+.+.+
T Consensus 87 ~~~i~~A~~lG~~~v~~~~~-p~~~~~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lE~~~~~~~~~~~~~~~~~~~~~~~ 164 (281)
T 3u0h_A 87 PDRARLCARLGARSVTAFLW-PSMDEEPVRYISQLARRIRQVAVEL-LPLGMRVGLEYVGPHHLRHRRYPFVQSLADLKT 164 (281)
T ss_dssp HHHHHHHHHTTCCEEEEECC-SEESSCHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCCGGGCCSSEECCCSHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeec-CCCCCcchhhHHHHHHHHHHHHHHH-HHcCCEEEEEeccccccccccccccCCHHHHHH
Confidence 33555667788887755432 2211112345677889999999999 9999998886421 2344567
Q ss_pred HHHHhCccEEEE
Q 012429 115 FVRECGASLLVT 126 (464)
Q Consensus 115 l~~~~~~~~V~~ 126 (464)
+++..+-..|-+
T Consensus 165 l~~~v~~~~vg~ 176 (281)
T 3u0h_A 165 FWEAIGAPNVGA 176 (281)
T ss_dssp HHHHHCCTTEEE
T ss_pred HHHHcCCCCeeE
Confidence 777776555544
No 80
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=23.86 E-value=2.1e+02 Score=26.48 Aligned_cols=54 Identities=7% Similarity=-0.073 Sum_probs=39.4
Q ss_pred HHHHHHHhhhCCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCc--EEEE
Q 012429 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQIL--FFLF 104 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~--L~v~ 104 (464)
+..+++.|.+.|.+.+.+... +. ......+..+.++|+.+.+.. ++.|+. |.+.
T Consensus 110 ~~~~i~~A~~lG~~~v~~~~~-~~--~~~~~~~~~~~~~l~~l~~~a-~~~Gv~~~l~~E 165 (303)
T 3l23_A 110 WKATAADHAKLGCKYLIQPMM-PT--ITTHDEAKLVCDIFNQASDVI-KAEGIATGFGYH 165 (303)
T ss_dssp HHHHHHHHHHTTCSEEEECSC-CC--CCSHHHHHHHHHHHHHHHHHH-HHTTCTTCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCC-CC--CCCHHHHHHHHHHHHHHHHHH-HHCCCcceEEEc
Confidence 555667778889887765322 21 123455678899999999999 999999 8875
No 81
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=23.62 E-value=1.2e+02 Score=32.85 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=37.5
Q ss_pred HHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcCh
Q 012429 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (464)
Q Consensus 88 ~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~ 132 (464)
+.-++| ++.|+++.+..|++......++++.+++.++....|..
T Consensus 561 ~aI~~L-~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~~~P~~ 604 (736)
T 3rfu_A 561 ETILEL-QQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIMPED 604 (736)
T ss_dssp HHHHHH-HHHTCEEEEECSSCHHHHHHHHHHHTCCCEECSCCHHH
T ss_pred HHHHHH-HHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEecCHHH
Confidence 444567 88899999999999999999999999999998876653
No 82
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=22.92 E-value=45 Score=33.00 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCc
Q 012429 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA 121 (464)
Q Consensus 82 l~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~ 121 (464)
+...+.+|=+.| ++.|++++|+.|.+.+.+..++++.++
T Consensus 222 ~~p~~~eLi~~L-~~~G~~v~IVSgg~~~~v~~ia~~lg~ 260 (385)
T 4gxt_A 222 TLDEMVDLYRSL-EENGIDCYIVSASFIDIVRAFATDTNN 260 (385)
T ss_dssp ECHHHHHHHHHH-HHTTCEEEEEEEEEHHHHHHHHHCTTS
T ss_pred eCHHHHHHHHHH-HHCCCeEEEEcCCcHHHHHHHHHHhCc
Confidence 467899999999 999999999999999999999987654
No 83
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=22.87 E-value=1.4e+02 Score=27.74 Aligned_cols=62 Identities=5% Similarity=-0.094 Sum_probs=50.2
Q ss_pred EEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCCccc--hHHHHHHHhCccEEE
Q 012429 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED--NIPNFVRECGASLLV 125 (464)
Q Consensus 63 ~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~--~l~~l~~~~~~~~V~ 125 (464)
.+|+.|....+.|.+-...+.+-+.+.-+.| .+.|.+++|+-.+... .+..|.+.+++--|-
T Consensus 33 ~iy~~D~a~~PYG~ks~~~i~~~~~~~~~~L-~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 33 VYYLGDTARCPYGPRDKEEVAKFTWEMTNFL-VDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp EEEEECGGGCCCTTSCHHHHHHHHHHHHHHH-HHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 4799998877888888888888888899999 8999999999887665 367777777765543
No 84
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=22.71 E-value=1.8e+02 Score=25.82 Aligned_cols=79 Identities=9% Similarity=-0.014 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhCCCCEEEEEEec-CCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC----------CccchHHH
Q 012429 46 ALIHAVDQANKNNVPVAVAFNLF-DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG----------EAEDNIPN 114 (464)
Q Consensus 46 aL~~A~~~a~~~~~~vl~vfi~d-p~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G----------~~~~~l~~ 114 (464)
.+..+++.|.+.|.+.+.+..-. +.. ......+..+.++|+.+.+.. ++.|+++.+..- ...+.+.+
T Consensus 86 ~~~~~i~~a~~lG~~~v~~~~g~~~~~-~~~~~~~~~~~~~l~~l~~~a-~~~gv~l~~E~~~~~~~~~~~~~~~~~~~~ 163 (260)
T 1k77_A 86 DIDLALEYALALNCEQVHVMAGVVPAG-EDAERYRAVFIDNIRYAADRF-APHGKRILVEALSPGVKPHYLFSSQYQALA 163 (260)
T ss_dssp HHHHHHHHHHHTTCSEEECCCCBCCTT-SCHHHHHHHHHHHHHHHHHHH-GGGTCEEEECCCCTTTSTTBSCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECcCCCCCC-CCHHHHHHHHHHHHHHHHHHH-HHcCCEEEEEeCCccCCCcCccCCHHHHHH
Confidence 45566677777888876443211 110 122345678999999999999 999999887542 12345667
Q ss_pred HHHHhCccEEEE
Q 012429 115 FVRECGASLLVT 126 (464)
Q Consensus 115 l~~~~~~~~V~~ 126 (464)
++++.+...|-+
T Consensus 164 l~~~~~~~~~g~ 175 (260)
T 1k77_A 164 IVEEVARDNVFI 175 (260)
T ss_dssp HHHHHCCTTEEE
T ss_pred HHHHhCCCCEEE
Confidence 788776554544
No 85
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=22.45 E-value=2.1e+02 Score=26.00 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhCCCCEEEEEEe-cCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC-CccchHHHHHHHhCccE
Q 012429 46 ALIHAVDQANKNNVPVAVAFNL-FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG-EAEDNIPNFVRECGASL 123 (464)
Q Consensus 46 aL~~A~~~a~~~~~~vl~vfi~-dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G-~~~~~l~~l~~~~~~~~ 123 (464)
.+..+++.|.+.|.+.+.+..- .|.. ....+..+.++|+.+.+.. ++.|+.+.+... +..+.+.++++..+-..
T Consensus 103 ~~~~~i~~a~~lG~~~v~~~~G~~~~~---~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lE~~~~~~~~~~~l~~~~~~~~ 178 (290)
T 3tva_A 103 EMKEISDFASWVGCPAIGLHIGFVPES---SSPDYSELVRVTQDLLTHA-ANHGQAVHLETGQESADHLLEFIEDVNRPN 178 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCCCCCT---TSHHHHHHHHHHHHHHHHH-HTTTCEEEEECCSSCHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCccc---chHHHHHHHHHHHHHHHHH-HHcCCEEEEecCCCCHHHHHHHHHhcCCCC
Confidence 3455566677788887765421 2221 3455678899999999999 999999887653 34566777888876555
Q ss_pred EEE
Q 012429 124 LVT 126 (464)
Q Consensus 124 V~~ 126 (464)
|-+
T Consensus 179 ~g~ 181 (290)
T 3tva_A 179 LGI 181 (290)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 86
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=22.28 E-value=79 Score=33.53 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEEcCCcCh
Q 012429 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (464)
Q Consensus 86 L~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~ 132 (464)
..+.=++| ++.|+++.+..|++......++++.+++.++.+..|..
T Consensus 462 ~~~~i~~L-~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~~P~~ 507 (645)
T 3j08_A 462 AKPAVQEL-KRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQ 507 (645)
T ss_dssp HHHHHHHH-HHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSCCTTC
T ss_pred HHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEeCCHHh
Confidence 34455667 88999999999999999999999999999999877764
No 87
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=21.90 E-value=3.4e+02 Score=24.39 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCC-ccc---hHHHHHHHhCccEEEEcC-CcChHHHHHHHHHHHHhcCCCeEEEe
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGE-AED---NIPNFVRECGASLLVTDF-SPLREIRRCKDKICNRVSDSVTIHEV 154 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~-~~~---~l~~l~~~~~~~~V~~~~-~p~~~~~~rd~~v~~~l~~~v~~~~~ 154 (464)
.|..+-+..+++.+ +++|..+++.... +.+ .+..++ ..+++.|+... ++.. ....+++..+.|+++..+
T Consensus 15 ~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~~~~----~~~~~~~~~~~~iPvV~~ 88 (306)
T 8abp_A 15 PWFQTEWKFADKAG-KDLGFEVIKIAVPDGEKTLNAIDSLA-ASGAKGFVICTPDPKL----GSAIVAKARGYDMKVIAV 88 (306)
T ss_dssp HHHHHHHHHHHHHH-HHHTEEEEEEECCSHHHHHHHHHHHH-HTTCCEEEEECSCGGG----HHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHHH-HHcCCEEEEeCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCchh----hHHHHHHHHHCCCcEEEe
Confidence 47777788888889 8899999877643 222 233333 34799998853 2221 112333333469999998
Q ss_pred eCC
Q 012429 155 DAH 157 (464)
Q Consensus 155 ~~~ 157 (464)
+..
T Consensus 89 ~~~ 91 (306)
T 8abp_A 89 DDQ 91 (306)
T ss_dssp SSC
T ss_pred CCC
Confidence 753
No 88
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.61 E-value=3.5e+02 Score=24.14 Aligned_cols=72 Identities=8% Similarity=0.095 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeCC--cc---chHHHHHHHhCccEEEEcC-CcChHHHHHHHHHHHHhcCCCeEEE
Q 012429 80 GFMLRGLRLLQRNIEETFQILFFLFQGE--AE---DNIPNFVRECGASLLVTDF-SPLREIRRCKDKICNRVSDSVTIHE 153 (464)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~--~~---~~l~~l~~~~~~~~V~~~~-~p~~~~~~rd~~v~~~l~~~v~~~~ 153 (464)
.|..+-+..+++.+ ++.|..+.+...+ +. +.+..+ ...+++.|++.. .+... ...+++..+.||++..
T Consensus 21 ~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~~~~~~----~~~~~~~~~~~iPvV~ 94 (293)
T 3l6u_A 21 EFAQRLINAFKAEA-KANKYEALVATSQNSRISEREQILEF-VHLKVDAIFITTLDDVYI----GSAIEEAKKAGIPVFA 94 (293)
T ss_dssp HHHHHHHHHHHHHH-HHTTCEEEEEECSSCHHHHHHHHHHH-HHTTCSEEEEECSCTTTT----HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHH-HHcCCEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCChHHH----HHHHHHHHHcCCCEEE
Confidence 46777788888899 9999999887643 22 233333 346899998843 22211 1233333346899998
Q ss_pred eeCC
Q 012429 154 VDAH 157 (464)
Q Consensus 154 ~~~~ 157 (464)
++..
T Consensus 95 ~~~~ 98 (293)
T 3l6u_A 95 IDRM 98 (293)
T ss_dssp ESSC
T ss_pred ecCC
Confidence 8653
No 89
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=21.20 E-value=1.3e+02 Score=24.65 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEeCCccchHHHHHHHhCccEEEE
Q 012429 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126 (464)
Q Consensus 81 Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~l~~~~~~~~V~~ 126 (464)
-.+..|.++.+++ ++.|+.++.+.-+..+.+.++++++++.-.+.
T Consensus 53 ~~~~~l~~~~~~~-~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~ 97 (163)
T 3gkn_A 53 TEGLDFNALLPEF-DKAGAKILGVSRDSVKSHDNFCAKQGFAFPLV 97 (163)
T ss_dssp HHHHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHhCCCceEE
Confidence 3467899999999 99999999888888888999999888764443
No 90
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=20.79 E-value=2.8e+02 Score=23.20 Aligned_cols=45 Identities=7% Similarity=0.020 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhcCCc-EEEEeCCccchHHHHHHHhCcc---EEEEcC
Q 012429 83 LRGLRLLQRNIEETFQIL-FFLFQGEAEDNIPNFVRECGAS---LLVTDF 128 (464)
Q Consensus 83 ~esL~~L~~~L~~~~G~~-L~v~~G~~~~~l~~l~~~~~~~---~V~~~~ 128 (464)
+..|.++.+++ ++.|+. ++.+.-+..+...++++++++. .++.|.
T Consensus 64 ~p~l~~~~~~~-~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~ 112 (171)
T 2pwj_A 64 VPPYKHNIDKF-KAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDF 112 (171)
T ss_dssp HHHHHHTHHHH-HHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECT
T ss_pred HHHHHHHHHHH-HHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECC
Confidence 45678888899 999999 8888777667788899998862 455553
No 91
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=20.71 E-value=3.3e+02 Score=22.95 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=38.2
Q ss_pred CCCCEEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCC--------ccchHHHHH-HHhCcc
Q 012429 57 NNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE--------AEDNIPNFV-RECGAS 122 (464)
Q Consensus 57 ~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~--------~~~~l~~l~-~~~~~~ 122 (464)
.|.+|+..|. .. .+...+ -.+..|.++.+++ .+.|+.++.+.-+ ..+.+.+++ +++++.
T Consensus 47 ~Gk~vll~F~-at---wC~~C~--~~~~~l~~l~~~~-~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2vup_A 47 KGSPLLIYNV-AS---KCGYTK--GGYETATTLYNKY-KSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAE 114 (190)
T ss_dssp TTSCEEEEEE-CS---SSTTHH--HHHHHHHHHHHHH-GGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCC
T ss_pred CCCEEEEEEe-cC---CCCccH--HHHHHHHHHHHHH-hcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCC
Confidence 3556665554 33 233222 3567889999999 8889888877643 345677777 677665
No 92
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=20.59 E-value=2.4e+02 Score=25.54 Aligned_cols=79 Identities=6% Similarity=0.025 Sum_probs=50.7
Q ss_pred HHHHHHHhhhCCCCEEEEEEecCCc---cccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeC--------CccchHHHH
Q 012429 47 LIHAVDQANKNNVPVAVAFNLFDQF---LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG--------EAEDNIPNF 115 (464)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~---~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G--------~~~~~l~~l 115 (464)
+..+++.|.+.|.+.+.+..-.... .......+..+.++|+.+.+.. ++.|+.|.+..- ...+.+.++
T Consensus 106 ~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lE~~~~~~~~~~~~~~~~~~l 184 (287)
T 3kws_A 106 MKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFA-AQHGTSVIFEPLNRKECFYLRQVADAASL 184 (287)
T ss_dssp HHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHH-HHTTCCEEECCCCTTTCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHH-HHcCCEEEEEecCcccCcccCCHHHHHHH
Confidence 4455666777888876553211111 1123455778899999999999 999999988632 123456678
Q ss_pred HHHhCccEEEE
Q 012429 116 VRECGASLLVT 126 (464)
Q Consensus 116 ~~~~~~~~V~~ 126 (464)
+++.+-..|-+
T Consensus 185 l~~v~~~~vg~ 195 (287)
T 3kws_A 185 CRDINNPGVRC 195 (287)
T ss_dssp HHHHCCTTEEE
T ss_pred HHHcCCCCeeE
Confidence 88776555544
No 93
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=20.57 E-value=3.8e+02 Score=22.48 Aligned_cols=63 Identities=25% Similarity=0.251 Sum_probs=41.7
Q ss_pred hhcCCcEEEEeCCccchHHHHHHHh--CccEEEEcC---CcChHHHHHHHHHHHHhc-CCCeEEEeeCCeeEeCc
Q 012429 95 ETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDF---SPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVW 163 (464)
Q Consensus 95 ~~~G~~L~v~~G~~~~~l~~l~~~~--~~~~V~~~~---~p~~~~~~rd~~v~~~l~-~~v~~~~~~~~~l~~~~ 163 (464)
+++|+.+.+++.+.+..|-..+.+. +.+.|+.|. +-.+ . +++.++. -++++.+++-+.++..+
T Consensus 39 ~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtS--v----AlrDAl~~v~~P~VEVHiSNi~aRE 107 (143)
T 1gqo_A 39 EALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYS--Y----AIRDAVSSISLPVVEVHLSNLYARE 107 (143)
T ss_dssp HHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTC--H----HHHHHHHTSCSCEEEEESSCGGGSC
T ss_pred HHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhcccc--H----HHHHHHHhCCCCEEEEEecCccccc
Confidence 4559999999988876666655443 577888873 2222 2 3444443 47999999877776544
No 94
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=20.09 E-value=1.7e+02 Score=26.80 Aligned_cols=63 Identities=2% Similarity=-0.072 Sum_probs=48.4
Q ss_pred EEEEEEecCCccccchhhHHHHHHHHHHHHHHHHhhcCCcEEEEeCCccc--hHHHHHHHhCccEE
Q 012429 61 VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED--NIPNFVRECGASLL 124 (464)
Q Consensus 61 vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~--~l~~l~~~~~~~~V 124 (464)
.-.+|+.|......+.+....+.+.+.+.-+.| .+.|.+.++...+... .+.++.+..++--|
T Consensus 26 ~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L-~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvi 90 (255)
T 2jfz_A 26 DEIIYYGDSARVPYGTKDPTTIKQFGLEALDFF-KPHEIELLIVACNTASALALEEMQKYSKIPIV 90 (255)
T ss_dssp SEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHH-GGGCCSCEEECCHHHHHHTHHHHHHHCSSCEE
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEeCchhhHHHHHHHHHhCCCCEE
Confidence 344799998766677777788889999999999 9999999999877654 56777777666444
Done!