BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012433
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QJF|A Chain A, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps
Synthetase 1
pdb|2QJF|B Chain B, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps
Synthetase 1
Length = 405
Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/396 (59%), Positives = 298/396 (75%), Gaps = 4/396 (1%)
Query: 60 KLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLH 119
++ EL V ++ + K +A TLP +++ K+D+QWV VL+EGWA+PL+GFMRE E+LQ LH
Sbjct: 14 EVKELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLH 73
Query: 120 FNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKE 179
F+ L DG V+N+SVPIVL E K R+ T AL+ + VAIL + E ++H KE
Sbjct: 74 FDCLL--DGGVINLSVPIVLTATHEDKERLDGCTAFALM-YEGRRVAILRNPEFFEHRKE 130
Query: 180 ERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFS 239
ER AR WGTT PY+ + + G+WLIGGDL+VL+ + ++DGLD++RL+P +L+ +F
Sbjct: 131 ERCARQWGTTCKNHPYI-KMVMEQGDWLIGGDLQVLDRVYWNDGLDQYRLTPTELKQKFK 189
Query: 240 KRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWR 299
NADAVFAFQLRNPVHNGHALLM DT ++LLE GY+ P+LLLHPLGG+TK DDVPL WR
Sbjct: 190 DMNADAVFAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTKDDDVPLMWR 249
Query: 300 MKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMG 359
MKQH VLE+GVL+PETTVV+IFPSPM YAGPTEVQWH +AR+ AGANFYIVGRDPAGM
Sbjct: 250 MKQHAAVLEEGVLNPETTVVAIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPAGMP 309
Query: 360 HPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFDPSRAKDFLFISG 419
HP +DLY+ HG KVL+MAPGL L I+PF+VAAY+K + +M ++D +DF FISG
Sbjct: 310 HPETGKDLYEPSHGAKVLTMAPGLITLEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISG 369
Query: 420 TKMRTLARSKENPPDGFMCPGGWKVLVEYYDSLTPA 455
T+MR LAR + PP+GFM P W VL EYY SL A
Sbjct: 370 TRMRKLAREGQKPPEGFMAPKAWTVLTEYYKSLEKA 405
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 490 bits (1262), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/396 (59%), Positives = 297/396 (75%), Gaps = 4/396 (1%)
Query: 60 KLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLH 119
++ EL V ++ + K +A TLP +++ K+D+QWV VL+EGWA+PL+GFMRE E+LQ LH
Sbjct: 233 EVKELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLH 292
Query: 120 FNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKE 179
F+ L DG V+N+SVPIVL E K R+ T AL+ + VAIL + E ++H KE
Sbjct: 293 FDCLL--DGGVINLSVPIVLTATHEDKERLDGCTAFALM-YEGRRVAILRNPEFFEHRKE 349
Query: 180 ERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFS 239
ER AR WGTT PY+ + + G+WLIGGDL+VL+ + ++DGLD++RL+P +L+ +F
Sbjct: 350 ERCARQWGTTCKNHPYI-KMVMEQGDWLIGGDLQVLDRVYWNDGLDQYRLTPTELKQKFK 408
Query: 240 KRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWR 299
NADAV AFQLRNPVHNGHALLM DT ++LLE GY+ P+LLLHPLGG+TK DDVPL WR
Sbjct: 409 DMNADAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTKDDDVPLMWR 468
Query: 300 MKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMG 359
MKQH VLE+GVL+PETTVV+IFPSPM YAGPTEVQWH +AR+ AGANFYIVGRDPAGM
Sbjct: 469 MKQHAAVLEEGVLNPETTVVAIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPAGMP 528
Query: 360 HPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFDPSRAKDFLFISG 419
HP +DLY+ HG KVL+MAPGL L I+PF+VAAY+K + +M ++D +DF FISG
Sbjct: 529 HPETGKDLYEPSHGAKVLTMAPGLITLEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISG 588
Query: 420 TKMRTLARSKENPPDGFMCPGGWKVLVEYYDSLTPA 455
T+MR LAR + PP+GFM P W VL EYY SL A
Sbjct: 589 TRMRKLAREGQKPPEGFMAPKAWTVLTEYYKSLEKA 624
>pdb|1G8F|A Chain A, Atp Sulfurylase From S. Cerevisiae
pdb|1G8G|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8G|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8H|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
pdb|1G8H|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
Length = 511
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 198/402 (49%), Gaps = 29/402 (7%)
Query: 56 PDGGKLTELIVDKSLRD---VRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRES 112
P GG L +LI +L+ + + +++ + LT L + ++ G SPL+GF+ E+
Sbjct: 4 PHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNEN 63
Query: 113 EFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIE 172
++ + RL DG++ ++PI L +D+ +I TR+AL D+ +AIL +
Sbjct: 64 DYSSVV--TDSRLADGTL--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQD 119
Query: 173 IYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHD--GLDRFRLS 230
+YK K R + P P + AG++ +GG LE ++ +++D GL R +
Sbjct: 120 VYKPNKTIEAERVF-RGDPEHPAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGL---RKT 175
Query: 231 PAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK 290
PAQLR EF R D V AFQ RNP+H H L R N +L+HP+ G TK
Sbjct: 176 PAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE------ANAKVLIHPVVGLTK 229
Query: 291 ADDVPLSWRMKQHEKVLE---DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGAN 347
D+ R++ ++++++ +G+ +S+ P M +G E WHA R N GA+
Sbjct: 230 PGDIDHHTRVRVYQEIIKRYPNGI-----AFLSLLPLAMRMSGDREAVWHAIIRKNYGAS 284
Query: 348 FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFD 407
+IVGRD AG G + D Y ++++ + ++PF++ Y + + A D
Sbjct: 285 HFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPID 344
Query: 408 P--SRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447
+ L ISGT++R R P+ F P K+L E
Sbjct: 345 QIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRE 386
>pdb|1R6X|A Chain A, The Crystal Structure Of A Truncated Form Of Yeast Atp
Sulfurylase, Lacking The C-Terminal Aps Kinase-Like
Domain, In Complex With Sulfate
Length = 395
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 198/402 (49%), Gaps = 29/402 (7%)
Query: 56 PDGGKLTELIVDKSLRD---VRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRES 112
P GG L +LI +L+ + + +++ + LT L + ++ G SPL+GF+ E+
Sbjct: 3 PHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNEN 62
Query: 113 EFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIE 172
++ + RL DG++ ++PI L +D+ +I TR+AL D+ +AIL +
Sbjct: 63 DYSSVV--TDSRLADGTL--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQD 118
Query: 173 IYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHD--GLDRFRLS 230
+YK P + A P P + AG++ +GG LE ++ +++D GL R +
Sbjct: 119 VYK-PNKTIEAEKVFRGDPEHPAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGL---RKT 174
Query: 231 PAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK 290
PAQLR EF R D V AFQ RNP+H H L R N +L+HP+ G TK
Sbjct: 175 PAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE------ANAKVLIHPVVGLTK 228
Query: 291 ADDVPLSWRMKQHEKVLE---DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGAN 347
D+ R++ ++++++ +G+ +S+ P M +G E WHA R N GA+
Sbjct: 229 PGDIDHHTRVRVYQEIIKRYPNGI-----AFLSLLPLAMRMSGDREAVWHAIIRKNYGAS 283
Query: 348 FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFD 407
+IVGRD AG G + D Y ++++ + ++PF++ Y + + A D
Sbjct: 284 HFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPID 343
Query: 408 P--SRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447
+ L ISGT++R R P+ F P K+L E
Sbjct: 344 QIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRE 385
>pdb|1J70|A Chain A, Crystal Structure Of Yeast Atp Sulfurylase
pdb|1J70|B Chain B, Crystal Structure Of Yeast Atp Sulfurylase
pdb|1J70|C Chain C, Crystal Structure Of Yeast Atp Sulfurylase
Length = 514
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 198/402 (49%), Gaps = 29/402 (7%)
Query: 56 PDGGKLTELIVDKSLRD---VRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRES 112
P GG L +LI +L+ + + +++ + LT L + ++ G SPL+GF+ E+
Sbjct: 7 PHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNEN 66
Query: 113 EFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIE 172
++ + RL DG++ ++PI L +D+ +I TR+AL D+ +AIL +
Sbjct: 67 DYSSVV--TDSRLADGTL--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQD 122
Query: 173 IYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHD--GLDRFRLS 230
+YK P + A P P + AG++ +GG LE ++ +++D GL R +
Sbjct: 123 VYK-PNKTIEAEKVFRGDPEHPAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGL---RKT 178
Query: 231 PAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK 290
PAQLR EF R D V AFQ RNP+H H L R N +L+HP+ G TK
Sbjct: 179 PAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE------ANAKVLIHPVVGLTK 232
Query: 291 ADDVPLSWRMKQHEKVLE---DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGAN 347
D+ R++ ++++++ +G+ +S+ P M +G E WHA R N GA+
Sbjct: 233 PGDIDHHTRVRVYQEIIKRYPNGI-----AFLSLLPLAMRMSGDREAVWHAIIRKNYGAS 287
Query: 348 FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFD 407
+IVGRD AG G + D Y ++++ + ++PF++ Y + + A D
Sbjct: 288 HFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPID 347
Query: 408 P--SRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447
+ L ISGT++R R P+ F P K+L E
Sbjct: 348 QIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRE 389
>pdb|1JEE|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JEE|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JED|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JED|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JEC|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Thiosulfate
Length = 510
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 198/402 (49%), Gaps = 29/402 (7%)
Query: 56 PDGGKLTELIVDKSLRD---VRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRES 112
P GG L +LI +L+ + + +++ + LT L + ++ G SPL+GF+ E+
Sbjct: 3 PHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNEN 62
Query: 113 EFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIE 172
++ + RL DG++ ++PI L +D+ +I TR+AL D+ +AIL +
Sbjct: 63 DYSSVV--TDSRLADGTL--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQD 118
Query: 173 IYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHD--GLDRFRLS 230
+YK P + A P P + AG++ +GG LE ++ +++D GL R +
Sbjct: 119 VYK-PNKTIEAEKVFRGDPEHPAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGL---RKT 174
Query: 231 PAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK 290
PAQLR EF R D V AFQ RNP+H H L R N +L+HP+ G TK
Sbjct: 175 PAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE------ANAKVLIHPVVGLTK 228
Query: 291 ADDVPLSWRMKQHEKVLE---DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGAN 347
D+ R++ ++++++ +G+ +S+ P M +G E WHA R N GA+
Sbjct: 229 PGDIDHHTRVRVYQEIIKRYPNGI-----AFLSLLPLAMRMSGDREAVWHAIIRKNYGAS 283
Query: 348 FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFD 407
+IVGRD AG G + D Y ++++ + ++PF++ Y + + A D
Sbjct: 284 HFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPID 343
Query: 408 P--SRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447
+ L ISGT++R R P+ F P K+L E
Sbjct: 344 QIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRE 385
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 187/372 (50%), Gaps = 16/372 (4%)
Query: 81 LPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLA 140
L I++++ + + +L+ G +PL FM E ++ + S+RL G++ +PI L
Sbjct: 7 LKSIQISQRSVLDLELLAVGAFTPLDRFMGEEDYRNVV--ESMRLKSGTL--FPIPITLP 62
Query: 141 IDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAI 200
++ E + + E + L D + +AI+ E+YK E GTT P P V +
Sbjct: 63 MEKEIAKDLKEGEWIVLRDPKNVPLAIMRVEEVYKWNLEYEAKNVLGTTDPRHPLVAEMH 122
Query: 201 TYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHA 260
T+ G + I G+L+V++ KY+D +R +P Q+R+E D + AFQ RNP+H H
Sbjct: 123 TW-GEYYISGELKVIQLPKYYD-FPEYRKTPKQVREEIKSLGLDKIVAFQTRNPMHRVHE 180
Query: 261 LLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVS 320
L T+R + ++G LLLHP+ G TK DV + RM+ + KVL + D + T+++
Sbjct: 181 EL---TKRAMEKVGGG---LLLHPVVGLTKPGDVDVYTRMRIY-KVLYEKYYDKKKTILA 233
Query: 321 IFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMA 380
P M AGP E WH R N GA +IVGRD A G + + YD +++
Sbjct: 234 FLPLAMRMAGPREALWHGIIRRNYGATHFIVGRDHASPGKDSKGKPFYDPYEAQELFKKY 293
Query: 381 PGLERLNILPFKVAAYDKTQGKMAFFDPSRAKD--FLFISGTKMR-TLARSKENPPDGFM 437
+ ++PF+ Y + + ++ ++ ++ ISGT++R + P+ F
Sbjct: 294 EDEIGIKMVPFEELVYVPELDQYVEINEAKKRNLKYINISGTEIRENFLKQGRKLPEWFT 353
Query: 438 CPGGWKVLVEYY 449
P ++L E Y
Sbjct: 354 RPEVAEILAETY 365
>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|B Chain B, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|C Chain C, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
Length = 573
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 196/406 (48%), Gaps = 37/406 (9%)
Query: 56 PDGGKLTELIVDKSLRDVR-KREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEF 114
P GG L +L+ + R EA +LP + LT+ L + ++ G SPL GFM ++++
Sbjct: 5 PHGGVLKDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADY 64
Query: 115 LQTLHFNSLRLDDGSVVNMSVPIVLAIDDE--QKRRIGESTRVALVD-SDDNVVAILNDI 171
+ N RL DG+V +M PI L E ++++ ++R+ L D DD +AIL
Sbjct: 65 DRVCEDN--RLADGNVFSM--PITLDASQEVIDEKKLQAASRITLRDFRDDRNLAILTID 120
Query: 172 EIYKHPKEERIARTWGT--TAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRL 229
+IY+ K + +G P + Y++ + + IGG +E + + ++D + R
Sbjct: 121 DIYRPDKTKEAKLVFGGDPEHPAIVYLNNTVK---EFYIGGKIEAVNKLNHYDYV-ALRY 176
Query: 230 SPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT 289
+PA+LR F K V AFQ RNP+H H L R + +L+HP+ G T
Sbjct: 177 TPAELRVHFDKLGWSRVVAFQTRNPMHRAHRELTVRAARS------RQANVLIHPVVGLT 230
Query: 290 KADDVPLSWRMKQHEKVLE---DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGA 346
K D+ R++ ++ +L +G+ V+ + M GP E WHA R N GA
Sbjct: 231 KPGDIDHFTRVRAYQALLPRYPNGM-----AVLGLLGLAMRMGGPREAIWHAIIRKNHGA 285
Query: 347 NFYIVGRDPAGMGHPVEKRDL---YDADHGKKVLSMAPGLERLNILPFKVAAY--DKTQG 401
+IVGRD AG G + D YDA H + G+E ++ F++ Y D +
Sbjct: 286 THFIVGRDHAGPGSNSKGEDFYGPYDAQHAVEKYKDELGIE---VVEFQMVTYLPDTDEY 342
Query: 402 KMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447
+ P+ K L ISGT++R RS + P+ F P K+L E
Sbjct: 343 RPVDQVPAGVKT-LNISGTELRRRLRSGAHIPEWFSYPEVVKILRE 387
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 195/406 (48%), Gaps = 37/406 (9%)
Query: 56 PDGGKLTELIVDKSLRDVR-KREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEF 114
P GG L +L+ + R EA +LP + LT+ L + ++ G SPL GFM ++++
Sbjct: 5 PHGGVLKDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADY 64
Query: 115 LQTLHFNSLRLDDGSVVNMSVPIVLAIDDE--QKRRIGESTRVALVD-SDDNVVAILNDI 171
+ N RL DG+V +M PI L E ++++ +R+ L D DD +AIL
Sbjct: 65 DRVCEDN--RLADGNVFSM--PITLDASQEVIDEKKLQAGSRITLRDFRDDRNLAILTID 120
Query: 172 EIYKHPKEERIARTWGT--TAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRL 229
+IY+ K + +G P + Y++ + + IGG +E + + ++D + R
Sbjct: 121 DIYRPDKTKEAKLVFGGDPEHPAIVYLNNTVK---EFYIGGKIEAVNKLNHYDYV-ALRY 176
Query: 230 SPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT 289
+PA+LR F K V AFQ RNP+H H L R + +L+HP+ G T
Sbjct: 177 TPAELRVHFDKLGWSRVVAFQTRNPMHRAHRELTVRAARS------RQANVLIHPVVGLT 230
Query: 290 KADDVPLSWRMKQHEKVLE---DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGA 346
K D+ R++ ++ +L +G+ V+ + M GP E WHA R N GA
Sbjct: 231 KPGDIDHFTRVRAYQALLPRYPNGM-----AVLGLLGLAMRMGGPREAIWHAIIRKNHGA 285
Query: 347 NFYIVGRDPAGMGHPVEKRDL---YDADHGKKVLSMAPGLERLNILPFKVAAY--DKTQG 401
+IVGRD AG G + D YDA H + G+E ++ F++ Y D +
Sbjct: 286 THFIVGRDHAGPGSNSKGEDFYGPYDAQHAVEKYKDELGIE---VVEFQMVTYLPDTDEY 342
Query: 402 KMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447
+ P+ K L ISGT++R RS + P+ F P K+L E
Sbjct: 343 RPVDQVPAGVKT-LNISGTELRRRLRSGAHIPEWFSYPEVVKILRE 387
>pdb|4DNX|A Chain A, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
pdb|4DNX|B Chain B, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
Length = 397
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 178/389 (45%), Gaps = 34/389 (8%)
Query: 77 EAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVP 136
EA +LP + ++ +L G+ SPL GFM ++ L + S+ L DG VP
Sbjct: 27 EAESLPSVIVSSQAAGNAVMLGAGYFSPLDGFMNLADALSSAQ--SMTLTDGRF--FPVP 82
Query: 137 IVLAIDDEQKRRIGESTRVALVDS--DDNVVAILNDIEIYKHPKEERIA----RTWGTTA 190
++ + E I +TR+AL D + N V + D+ + + ++A + +GT+
Sbjct: 83 LLCLL--ESADAIAGATRIALRDPNVEGNPVLAVMDVTAVEQVSDAQMALMTEQVYGTSD 140
Query: 191 PGLPYVDQAITYAGNWLIGGDLEVLEPIKYH-DGLDRFRLSPAQLRDEFSKRNADAVFAF 249
P P V + G I G ++VL + D D FR + ++R E +R + AF
Sbjct: 141 PKHPGV-ETFNSQGRTAISGPIQVLNFSYFQTDFPDTFRTA-VEIRHEIQERGWQKIVAF 198
Query: 250 QLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLED 309
Q RNP+H H L + G +++H L G K D+P R + + +
Sbjct: 199 QTRNPMHRAHEELCKMAMEAVEADG-----VVIHMLLGQLKPGDIPAPVR-DAAIRTMAE 252
Query: 310 GVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGH---PVEKRD 366
P T +V+ + M YAGP E HA R N GA +I+GRD AG+G P + +
Sbjct: 253 LYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGPFDAQT 312
Query: 367 LYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFDPS---RAKDFLFISGTKMR 423
++D VL+ + I AY K G++ + DF+ +SGT++R
Sbjct: 313 IFDDAVPTDVLA-------IEIFRADNTAYSKKLGRVVMMRDAPDHTPDDFIQLSGTRVR 365
Query: 424 TLARSKENPPDGFMCPGGWKVLVEYYDSL 452
+ E PP F P ++L++YY SL
Sbjct: 366 EMLGQGEAPPPEFSRPEVAQILMDYYRSL 394
>pdb|1JHD|A Chain A, Crystal Structure Of Bacterial Atp Sulfurylase From The
Riftia Pachyptila Symbiont
Length = 396
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 173/392 (44%), Gaps = 38/392 (9%)
Query: 77 EAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVP 136
EA +LP + ++ ++ G+ SPL GFM ++ + + L DGS VP
Sbjct: 27 EAESLPSVVISSQAAGNAVMMGAGYFSPLQGFMNVADAMGAA--EKMTLSDGSF--FPVP 82
Query: 137 IVLAIDDEQKRRIGESTRVALVD--SDDNVVAILNDIEIYKHPKEERIA-------RTWG 187
++ + E IG++ R+AL D + N V + DIE + +E++A RT
Sbjct: 83 VLCLL--ENTDAIGDAKRIALRDPNVEGNPVLAVMDIEAIEEVSDEQMAVMTDKVYRTTD 140
Query: 188 TTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYH-DGLDRFRLSPAQLRDEFSKRNADAV 246
G+ + G + G ++VL + D D FR + ++R+E + V
Sbjct: 141 MDHIGV----KTFNSQGRVAVSGPIQVLNFSYFQADFPDTFR-TAVEIRNEIKEHGWSKV 195
Query: 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKV 306
AFQ RNP+H H L L G +++H L G K D+P R +
Sbjct: 196 VAFQTRNPMHRAHEELCRMAMESLDADG-----VVVHMLLGKLKKGDIPAPVR-DAAIRT 249
Query: 307 LEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRD 366
+ + P T +V+ + M YAGP E HA R N GA +I+GRD AG+G D
Sbjct: 250 MAEVYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVG------D 303
Query: 367 LYDADHGKKVL--SMAPGLERLNILPFKVAAYDKTQGKMAFFD--PSRAK-DFLFISGTK 421
Y A + + + G + I AY K K+ P K DF+ +SGTK
Sbjct: 304 YYGAFDAQTIFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRDVPDHTKEDFVLLSGTK 363
Query: 422 MRTLARSKENPPDGFMCPGGWKVLVEYYDSLT 453
+R + PP F P K+L++YY S+
Sbjct: 364 VREMLGQGIAPPPEFSRPEVAKILMDYYQSIN 395
>pdb|1V47|A Chain A, Crystal Structure Of Atp Sulfurylase From Thermus
Thermophillus Hb8 In Complex With Aps
pdb|1V47|B Chain B, Crystal Structure Of Atp Sulfurylase From Thermus
Thermophillus Hb8 In Complex With Aps
Length = 349
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 167/363 (46%), Gaps = 30/363 (8%)
Query: 80 TLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVL 139
TLP + + + + + L+ G P+ GFM E L H +RL G V ++PI+L
Sbjct: 4 TLPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVAH--EMRLPTGEV--WTIPILL 59
Query: 140 AIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQA 199
+K R+G VAL+ + V A+L+ E Y+ E +GT + P V +
Sbjct: 60 QF--REKPRVGPGNTVALLHGGERV-ALLHVAEAYELDLEALARAVFGTDSETHPGVAR- 115
Query: 200 ITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGH 259
+ G + + G +EVL+P + L++ +P ++R F +R V AFQ RN H H
Sbjct: 116 LYGKGPYALAGRVEVLKP-RPRTPLEK---TPEEVRAFFRQRGWRKVVAFQTRNAPHRAH 171
Query: 260 ALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVV 319
L+ R LE+ +L+HP+ G K DD P ++ ++ ++ D L E
Sbjct: 172 EYLI----RLGLELADG---VLVHPILGAKKPDDFPTEVIVEAYQALIRD-FLPQERVAF 223
Query: 320 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSM 379
+PM YAGP E +HA R N GA ++VGRD AG+G D YD ++
Sbjct: 224 FGLATPMRYAGPKEAVFHALVRKNFGATHFLVGRDHAGVG------DFYDPYAAHRIFDR 277
Query: 380 AP--GLERLNI-LPFKVAAYDKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGF 436
P G+E + + F + + R K IS TK+R L R + PP
Sbjct: 278 LPPLGIEIVKVGAVFHCPLCGGIASERTCPEGHREKR-TAISMTKVRALLREGKAPPSEL 336
Query: 437 MCP 439
+ P
Sbjct: 337 VRP 339
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 130/311 (41%), Gaps = 62/311 (19%)
Query: 53 LIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQW-----VHVLSEGWASPLSG 107
LIEP GG L LI D R+ K EA +LP +DL W + +L G SPL+G
Sbjct: 5 LIEPYGGTLVNLI-DPEKREALKHEALSLP-----SLDLDWQQQCELEMLMTGAYSPLTG 58
Query: 108 FMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDE--QKRRIGESTRVALVDSDDNVV 165
FM ++ + ++ +LDDGS PI L D RR GE R+AL D + ++
Sbjct: 59 FMTRAQCARV--ESAQQLDDGSF--WPSPITLTSRDRALADRRPGE--RLALRDGEGYML 112
Query: 166 AILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLE--VLEPIKYHDG 223
AIL +++K + W + G++E L P H
Sbjct: 113 AILTLSDVWKDGE--------------------------RWHLAGEVEGAALPP---HPD 143
Query: 224 LDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPI-LLL 282
R +PA+LR F +R + A+Q R P+H L+ +N LLL
Sbjct: 144 FVSLRATPAELRALFVRRGWRRIIAWQARQPMHRAQYEF-------CLKSAIENEANLLL 196
Query: 283 HP-LGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKAR 341
HP +GG + P + + + + D TT +S+ P+P A + A
Sbjct: 197 HPQVGG--DITEAPAYFGLVRSFLAIRD-RFPAATTQLSLLPAPPPEASGRALLLRAIVA 253
Query: 342 INAGANFYIVG 352
N G + I G
Sbjct: 254 RNFGCSLLIAG 264
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 118/301 (39%), Gaps = 45/301 (14%)
Query: 118 LHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHP 177
L+FNSLR +++++ ID ++ I R+ D+D ++ A + D + +
Sbjct: 136 LYFNSLRTYWQELIDLNTGESTDIDVKEAL-INAFKRL---DNDISLEAQVGDPNSFLNY 191
Query: 178 KEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDE 237
R+A + T + +VD + N GD + ++ DG S L ++
Sbjct: 192 LVLRVAFSGATAC--VAHVDGVDLHVAN---TGDSRAMLGVQEEDG----SWSAVTLSND 242
Query: 238 FSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLS 297
+ +N V +L +P + +++ D RLL LL P + DV
Sbjct: 243 HNAQNEREVERLKLEHPKNEAKSVVKQD---RLLG--------LLMPFRAF---GDVKFK 288
Query: 298 WRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPT-----EVQWHAKARINAGANFYIVG 352
W + ++V+E G + F P +Y P EV +H R+ F ++
Sbjct: 289 WSIDLQKRVIESGPDQLNDNEYTKFIPPNYYTPPYLTAEPEVTYH---RLRPQDKFLVLA 345
Query: 353 RDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKM-AFFDPSRA 411
D G+ + ++D+ + V G+ P V Y T G+M RA
Sbjct: 346 TD--GLWETMHRQDVV-----RIVGEYLTGMHHQQ--PIAVGGYKVTLGQMHGLLTERRA 396
Query: 412 K 412
K
Sbjct: 397 K 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,687,829
Number of Sequences: 62578
Number of extensions: 643407
Number of successful extensions: 1329
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1268
Number of HSP's gapped (non-prelim): 15
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)