Query 012433
Match_columns 464
No_of_seqs 158 out of 613
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04149 sat sulfate adenylylt 100.0 1E-133 3E-138 1036.0 42.4 381 53-454 3-386 (391)
2 COG2046 MET3 ATP sulfurylase ( 100.0 8E-133 2E-137 1005.4 34.5 378 53-454 3-382 (397)
3 PRK05537 bifunctional sulfate 100.0 6E-128 1E-132 1037.8 42.5 389 53-455 1-391 (568)
4 cd00517 ATPS ATP-sulfurylase. 100.0 2E-124 3E-129 959.0 39.9 351 81-448 1-353 (353)
5 TIGR00339 sopT ATP sulphurylas 100.0 1E-123 2E-128 961.7 41.2 380 56-447 1-383 (383)
6 KOG4238 Bifunctional ATP sulfu 100.0 2.3E-91 5E-96 702.7 24.4 391 60-454 231-626 (627)
7 PF01747 ATP-sulfurylase: ATP- 100.0 3E-85 6.6E-90 629.6 20.3 213 224-449 1-215 (215)
8 KOG0636 ATP sulfurylase (sulfa 100.0 1.6E-74 3.5E-79 578.9 -0.3 454 1-462 1-459 (466)
9 PF14306 PUA_2: PUA-like domai 100.0 2.8E-54 6.2E-59 398.4 12.1 159 54-217 1-160 (160)
10 KOG0636 ATP sulfurylase (sulfa 100.0 1.2E-54 2.5E-59 435.9 -2.6 350 87-455 11-362 (466)
11 cd02039 cytidylyltransferase_l 98.9 7.1E-09 1.5E-13 91.0 10.6 94 250-357 6-104 (143)
12 cd02169 Citrate_lyase_ligase C 98.5 8.1E-06 1.7E-10 83.0 19.3 160 231-431 100-282 (297)
13 PRK00168 coaD phosphopantethei 98.1 0.00017 3.7E-09 66.7 16.2 153 247-450 5-158 (159)
14 cd02163 PPAT Phosphopantethein 98.0 0.00017 3.7E-09 66.3 14.1 145 251-446 7-152 (153)
15 smart00764 Citrate_ly_lig Citr 97.9 0.0002 4.3E-09 68.1 13.3 140 251-430 7-166 (182)
16 cd02168 NMNAT_Nudix Nicotinami 97.9 0.0005 1.1E-08 65.3 15.7 154 251-448 7-165 (181)
17 cd02165 NMNAT Nicotinamide/nic 97.8 0.00048 1E-08 65.1 14.1 167 251-448 7-189 (192)
18 TIGR01510 coaD_prev_kdtB pante 97.8 0.00072 1.6E-08 62.2 14.2 147 251-447 7-153 (155)
19 TIGR01527 arch_NMN_Atrans nico 97.8 0.001 2.2E-08 62.4 15.1 144 251-448 7-154 (165)
20 PRK05379 bifunctional nicotina 97.7 0.00035 7.6E-09 72.2 12.9 147 251-448 14-171 (340)
21 PRK08887 nicotinic acid mononu 97.7 0.00071 1.5E-08 63.7 13.5 156 245-448 3-167 (174)
22 cd02166 NMNAT_Archaea Nicotina 97.7 0.0019 4.1E-08 60.1 15.8 146 251-448 7-156 (163)
23 PLN02945 nicotinamide-nucleoti 97.7 0.00075 1.6E-08 66.4 13.0 179 245-447 22-231 (236)
24 PRK01153 nicotinamide-nucleoti 97.6 0.002 4.3E-08 60.8 14.2 146 251-448 8-157 (174)
25 cd02064 FAD_synthetase_N FAD s 97.6 0.0018 3.9E-08 60.9 13.7 148 246-431 2-160 (180)
26 PRK00071 nadD nicotinic acid m 97.4 0.0055 1.2E-07 58.6 15.0 174 245-448 5-198 (203)
27 PRK06973 nicotinic acid mononu 97.4 0.0068 1.5E-07 60.2 16.0 180 245-448 23-238 (243)
28 TIGR00482 nicotinate (nicotina 97.4 0.0034 7.4E-08 59.6 13.2 167 251-448 5-190 (193)
29 TIGR00083 ribF riboflavin kina 97.2 0.0034 7.3E-08 63.9 11.9 161 247-452 2-172 (288)
30 PRK13793 nicotinamide-nucleoti 97.1 0.0058 1.3E-07 59.0 11.4 148 253-448 14-166 (196)
31 cd09286 NMNAT_Eukarya Nicotina 97.0 0.023 4.9E-07 55.7 15.1 182 246-448 2-222 (225)
32 PRK07152 nadD putative nicotin 96.6 0.03 6.6E-07 57.9 13.2 167 246-448 3-181 (342)
33 TIGR00124 cit_ly_ligase [citra 96.5 0.028 6.1E-07 58.3 11.8 171 244-449 139-330 (332)
34 PRK13964 coaD phosphopantethei 96.4 0.039 8.4E-07 50.7 11.1 131 251-430 9-140 (140)
35 PRK05627 bifunctional riboflav 96.4 0.023 5E-07 58.3 10.6 163 245-450 15-187 (305)
36 COG1057 NadD Nicotinic acid mo 96.3 0.031 6.8E-07 54.0 10.1 171 251-447 11-191 (197)
37 PF08218 Citrate_ly_lig: Citra 96.2 0.11 2.3E-06 49.8 12.8 146 250-430 6-166 (182)
38 COG0196 RibF FAD synthase [Coe 96.0 0.099 2.1E-06 53.8 12.5 152 244-431 16-175 (304)
39 COG0669 CoaD Phosphopantethein 95.8 0.25 5.5E-06 46.3 13.3 146 251-448 10-157 (159)
40 PRK00777 phosphopantetheine ad 95.5 0.2 4.3E-06 46.4 11.6 136 245-427 3-143 (153)
41 PRK07143 hypothetical protein; 94.9 0.16 3.5E-06 51.5 9.8 99 244-356 16-118 (279)
42 PRK13670 hypothetical protein; 94.8 0.16 3.5E-06 53.9 9.6 100 245-357 2-106 (388)
43 PRK08099 bifunctional DNA-bind 93.7 1.7 3.6E-05 46.4 14.7 58 244-308 53-120 (399)
44 cd02167 NMNAT_NadR Nicotinamid 93.2 1 2.2E-05 41.9 10.6 84 251-345 7-94 (158)
45 TIGR02199 rfaE_dom_II rfaE bif 92.1 4.1 8.9E-05 37.1 13.0 98 238-357 6-108 (144)
46 cd02171 G3P_Cytidylyltransfera 91.9 0.79 1.7E-05 40.4 7.8 90 244-356 2-96 (129)
47 PF06574 FAD_syn: FAD syntheta 90.6 0.48 1E-05 44.0 5.3 105 244-356 6-117 (157)
48 PRK13671 hypothetical protein; 90.4 1.3 2.7E-05 45.7 8.6 97 246-358 2-106 (298)
49 TIGR00125 cyt_tran_rel cytidyl 89.5 1 2.2E-05 34.6 5.6 56 247-308 3-62 (66)
50 PLN02388 phosphopantetheine ad 89.4 2.8 6E-05 40.1 9.5 140 243-428 19-166 (177)
51 cd02164 PPAT_CoAS phosphopante 86.5 4.3 9.4E-05 37.2 8.6 74 248-331 3-83 (143)
52 PF01467 CTP_transf_2: Cytidyl 85.0 1.2 2.6E-05 38.9 4.1 53 251-308 5-60 (157)
53 COG3053 CitC Citrate lyase syn 83.8 15 0.00032 38.2 11.6 192 197-430 102-317 (352)
54 TIGR01526 nadR_NMN_Atrans nico 81.8 3.2 6.9E-05 42.9 6.3 51 251-308 9-62 (325)
55 TIGR01518 g3p_cytidyltrns glyc 77.6 3.1 6.8E-05 36.6 4.0 89 248-357 3-94 (125)
56 cd02156 nt_trans nucleotidyl t 75.8 5.6 0.00012 33.8 5.0 48 251-305 7-57 (105)
57 cd02172 RfaE_N N-terminal doma 75.5 27 0.00059 31.8 9.7 90 244-357 5-99 (144)
58 cd02170 cytidylyltransferase c 73.4 19 0.00042 31.8 8.0 88 245-356 3-95 (136)
59 COG0414 PanC Panthothenate syn 72.3 4.3 9.4E-05 41.4 3.9 68 228-299 4-73 (285)
60 COG1056 NadR Nicotinamide mono 69.0 7.9 0.00017 37.0 4.7 62 252-323 12-78 (172)
61 PF02569 Pantoate_ligase: Pant 68.1 3.4 7.3E-05 42.3 2.2 67 229-299 5-73 (280)
62 PF05636 HIGH_NTase1: HIGH Nuc 68.0 7.9 0.00017 41.3 5.0 96 246-359 3-108 (388)
63 TIGR00018 panC pantoate--beta- 65.6 3.9 8.4E-05 41.9 2.0 40 229-268 5-46 (282)
64 PRK03681 hypA hydrogenase nick 63.3 3.7 8E-05 36.3 1.2 38 385-422 61-106 (114)
65 COG1323 Predicted nucleotidylt 62.6 38 0.00082 36.0 8.7 98 246-359 3-108 (358)
66 PLN02660 pantoate--beta-alanin 61.7 5.3 0.00011 41.0 2.2 55 229-286 4-60 (284)
67 TIGR00100 hypA hydrogenase nic 59.9 4.7 0.0001 35.7 1.3 38 385-422 61-105 (115)
68 cd00560 PanC Pantoate-beta-ala 57.8 6.8 0.00015 40.0 2.2 40 229-268 5-46 (277)
69 PRK12380 hydrogenase nickel in 57.7 5.4 0.00012 35.2 1.3 38 385-422 61-105 (113)
70 PF09142 TruB_C: tRNA Pseudour 54.6 23 0.00049 27.6 4.1 34 138-171 3-45 (56)
71 PF01155 HypA: Hydrogenase exp 50.5 7.7 0.00017 34.2 1.1 38 385-422 61-105 (113)
72 PRK00564 hypA hydrogenase nick 47.6 7 0.00015 34.8 0.3 38 385-422 62-107 (117)
73 PF14359 DUF4406: Domain of un 46.9 29 0.00063 29.6 4.0 68 206-293 1-74 (92)
74 PRK00380 panC pantoate--beta-a 45.0 31 0.00067 35.3 4.6 40 229-268 5-46 (281)
75 PRK13477 bifunctional pantoate 44.4 44 0.00095 37.1 5.9 38 229-267 5-43 (512)
76 PRK00762 hypA hydrogenase nick 44.0 11 0.00023 33.9 1.0 38 385-423 61-112 (124)
77 cd02786 MopB_CT_3 The MopB_CT_ 43.7 47 0.001 28.3 4.9 37 138-174 32-70 (116)
78 PRK07562 ribonucleotide-diphos 43.1 46 0.001 40.5 6.1 76 102-197 377-453 (1220)
79 PRK13671 hypothetical protein; 41.2 44 0.00095 34.6 5.0 83 208-301 2-87 (298)
80 COG1500 Predicted exosome subu 40.5 2.8 6.2E-05 41.6 -3.5 48 138-192 20-73 (234)
81 COG0231 Efp Translation elonga 40.0 21 0.00046 32.5 2.2 67 79-168 60-126 (131)
82 cd02174 CCT CTP:phosphocholine 39.9 2.3E+02 0.005 26.1 9.1 90 245-356 4-99 (150)
83 cd00508 MopB_CT_Fdh-Nap-like T 39.7 56 0.0012 27.6 4.8 36 139-174 37-74 (120)
84 cd02781 MopB_CT_Acetylene-hydr 39.4 62 0.0013 28.1 5.1 36 138-173 34-71 (130)
85 cd02792 MopB_CT_Formate-Dh-Na- 39.1 76 0.0016 27.1 5.5 37 139-175 37-75 (122)
86 cd02790 MopB_CT_Formate-Dh_H F 38.8 70 0.0015 27.0 5.2 37 139-175 37-75 (116)
87 cd02787 MopB_CT_ydeP The MopB_ 38.7 52 0.0011 28.0 4.4 35 138-172 32-68 (112)
88 cd02785 MopB_CT_4 The MopB_CT_ 38.1 75 0.0016 27.6 5.4 39 138-176 33-73 (124)
89 cd02779 MopB_CT_Arsenite-Ox Th 38.0 72 0.0016 27.4 5.2 37 139-175 35-73 (115)
90 cd02173 ECT CTP:phosphoethanol 37.9 82 0.0018 29.1 5.8 89 245-357 3-100 (152)
91 cd02794 MopB_CT_DmsA-EC The Mo 36.2 55 0.0012 28.3 4.2 35 139-173 32-68 (121)
92 PRK01170 phosphopantetheine ad 36.0 1.3E+02 0.0027 31.6 7.4 56 246-308 3-62 (322)
93 PRK03824 hypA hydrogenase nick 35.8 19 0.0004 32.8 1.2 19 386-404 62-80 (135)
94 cd02789 MopB_CT_FmdC-FwdD The 35.0 76 0.0016 27.2 4.8 35 138-172 32-68 (106)
95 cd02788 MopB_CT_NDH-1_NuoG2-N7 34.3 77 0.0017 26.5 4.7 34 139-172 31-66 (96)
96 PTZ00308 ethanolamine-phosphat 34.2 1.7E+02 0.0038 30.9 8.2 91 243-356 11-106 (353)
97 cd02783 MopB_CT_2 The MopB_CT_ 33.3 79 0.0017 29.1 4.9 34 139-172 34-69 (156)
98 COG1019 Predicted nucleotidylt 32.7 1.1E+02 0.0023 29.1 5.6 57 246-309 7-69 (158)
99 PF01568 Molydop_binding: Moly 30.8 52 0.0011 27.6 3.1 36 138-173 31-68 (110)
100 cd02776 MopB_CT_Nitrate-R-NarG 30.8 88 0.0019 28.4 4.7 36 138-173 32-69 (141)
101 cd02791 MopB_CT_Nitrate-R-NapA 30.8 95 0.0021 26.5 4.8 35 139-173 37-73 (122)
102 cd02778 MopB_CT_Thiosulfate-R- 30.7 1.2E+02 0.0027 25.9 5.5 37 138-174 31-69 (123)
103 cd02784 MopB_CT_PHLH The MopB_ 30.0 73 0.0016 29.0 4.0 36 139-174 40-77 (137)
104 cd02775 MopB_CT Molybdopterin- 29.8 83 0.0018 25.6 4.1 35 138-172 24-60 (101)
105 cd02780 MopB_CT_Tetrathionate_ 27.6 90 0.0019 27.9 4.2 37 138-174 31-69 (143)
106 cd02777 MopB_CT_DMSOR-like The 27.0 93 0.002 27.1 4.1 35 139-173 36-72 (127)
107 cd04470 S1_EF-P_repeat_1 S1_EF 27.0 37 0.00079 26.7 1.4 21 147-167 38-58 (61)
108 cd02782 MopB_CT_1 The MopB_CT_ 26.3 1.6E+02 0.0034 25.6 5.4 38 139-176 35-74 (129)
109 PF06239 ECSIT: Evolutionarily 25.9 91 0.002 31.2 4.2 50 246-318 54-103 (228)
110 cd02793 MopB_CT_DMSOR-BSOR-TMA 25.9 95 0.0021 27.3 4.0 35 139-173 35-71 (129)
111 PRK13599 putative peroxiredoxi 25.1 3E+02 0.0065 26.8 7.6 97 134-246 92-205 (215)
112 COG0375 HybF Zn finger protein 24.4 45 0.00098 30.0 1.6 37 386-422 62-105 (115)
113 COG1370 Prefoldin, molecular c 24.4 71 0.0015 30.1 2.9 30 136-169 102-131 (155)
114 cd04463 S1_EF_like S1_EF_like: 24.1 41 0.00088 25.4 1.1 23 145-167 33-55 (55)
115 PF12450 vWF_A: von Willebrand 24.0 70 0.0015 28.0 2.6 32 417-451 38-69 (99)
116 PF01472 PUA: PUA domain; Int 24.0 77 0.0017 25.4 2.8 32 135-170 21-52 (74)
117 COG4118 Phd Antitoxin of toxin 23.9 92 0.002 26.3 3.3 26 144-170 16-41 (84)
118 PRK13760 putative RNA-associat 23.7 47 0.001 33.2 1.7 58 138-204 20-83 (231)
119 cd00950 DHDPS Dihydrodipicolin 23.6 6.4E+02 0.014 25.0 9.9 74 269-353 29-103 (284)
120 PF07157 DNA_circ_N: DNA circu 23.5 74 0.0016 27.5 2.7 19 269-289 71-89 (93)
121 smart00359 PUA Putative RNA-bi 23.1 93 0.002 24.3 3.1 21 149-169 31-51 (77)
122 PRK04980 hypothetical protein; 22.7 85 0.0018 27.6 3.0 30 147-176 30-60 (102)
No 1
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=100.00 E-value=1.5e-133 Score=1035.98 Aligned_cols=381 Identities=33% Similarity=0.497 Sum_probs=366.9
Q ss_pred ccCCCCCceeecccCchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCeee
Q 012433 53 LIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVN 132 (464)
Q Consensus 53 li~PhGg~Lv~l~v~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~p 132 (464)
++.||||+|+||+|+++++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 3 ~~~phgg~l~~l~v~~~~~~~~~~~a~~lp~i~i~~~~l~dLell~~G~fsPL~GFM~~~d~~sV~--~~~rL~~G~~-- 78 (391)
T PRK04149 3 LIPPHGGELVNRVVEGRDREEILEEAESLPRIELDERAASDLEMIAIGGFSPLTGFMGREDYDSVV--EEMRLANGLV-- 78 (391)
T ss_pred CCCCCCCcchhccCCHHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCcccCCCHHHHHHHH--HhCcCCCCCC--
Confidence 568999999999999999999999999999999999999999999999999999999999999999 6999999998
Q ss_pred cceeEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE
Q 012433 133 MSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL 212 (464)
Q Consensus 133 wpiPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v 212 (464)
|||||||+|++|++++|++|++|+|++ +|+++|+|+|+|+|++||+++|++||||+|++||||++++ +.|+|+|||+|
T Consensus 79 wpiPi~L~v~~e~~~~l~~g~~vaL~~-~G~~va~l~V~evf~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~i 156 (391)
T PRK04149 79 WSIPITLDVSEEDAASLKEGDEVALVY-KGEPYGVLEVEEIYTYDKKKEAEKVYKTTDEKHPGVKKLY-EQGDVYLAGPV 156 (391)
T ss_pred cceeEEEeCCHHHHhhCCCCCEEEEee-CCEEEEEEEeeeEecCChHHHHHHHhCCCCcCCchHHHHH-hcCCEEEEeEE
Confidence 599999999999999999999999995 9999999999999999999999999999999999999976 67999999999
Q ss_pred EEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC
Q 012433 213 EVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292 (464)
Q Consensus 213 ~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~ 292 (464)
++++++.+. +|++||+||+|+|+.|+++||++|||||||||+|||||+||| +|+|.+ ++||||||+|++|+|
T Consensus 157 ~~l~~~~~~-~f~~~r~tP~e~r~~f~~~gw~~VvafqTrnP~HraHe~l~~----~a~e~~---d~lll~plvG~~k~~ 228 (391)
T PRK04149 157 TLLNRKFHE-PFPRFWLTPAETRELFEEKGWKTVVAFQTRNPPHRAHEYLQK----CALEIV---DGLLLNPLVGETKSG 228 (391)
T ss_pred EEeecCCCC-CchhhcCCHHHHHHHHHHcCCCeEEEeecCCCCchHHHHHHH----HHHHhc---CeEEEecCcCCCCCC
Confidence 999988764 799999999999999999999999999999999999999997 466774 799999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCch
Q 012433 293 DVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADH 372 (464)
Q Consensus 293 Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~ 372 (464)
|+|+++|||||+++++ ||||+++++|++||++|||||||||||||||||||||||||||||||||| +|||+|+
T Consensus 229 di~~~~r~~~~~~~~~-~y~p~~~v~l~~lp~~mryAGPrEa~lhAivrkN~GcTh~IvGrDHAG~g------~~Y~~~~ 301 (391)
T PRK04149 229 DIPAEVRMEAYEALLK-NYYPKDRVLLSVTPAAMRYAGPREAIFHAIVRKNYGCTHFIVGRDHAGVG------DYYGPYD 301 (391)
T ss_pred CCCHHHHHHHHHHHHH-hcCCCCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCcc------ccCCCch
Confidence 9999999999999999 69999999999999999999999999999999999999999999999999 8999999
Q ss_pred hhHHhhhC-CCCCcceeeEeceEEEecCCCceee--cCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHh
Q 012433 373 GKKVLSMA-PGLERLNILPFKVAAYDKTQGKMAF--FDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYY 449 (464)
Q Consensus 373 aq~i~~~~-~~~~~i~i~~f~~~~Yc~~c~~~~~--~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~ 449 (464)
||+||+++ +++.+|+|++|+++|||++|++|++ +|||+++++++||||+||+||++|+.||+|||||||+++|+++|
T Consensus 302 aq~i~~~~~~~~l~I~~v~~~~~~Yc~~c~~~~~~~~cphg~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~iL~~~~ 381 (391)
T PRK04149 302 AQEIFDEFTEEELGITPLKFEEAFYCPKCGGMASEKTCPHGKEDRVHLSGTKVREMLREGEKPPPEFSRPEVAEVLIKGL 381 (391)
T ss_pred HHHHHHhCCcccCCceEEecceeEEecCCCeEEEcccCCCCCCceEeeCHHHHHHHHHCcCCCCCccCcHHHHHHHHHHh
Confidence 99999998 5677899999999999999999999 59999999999999999999999999999999999999999999
Q ss_pred hccCC
Q 012433 450 DSLTP 454 (464)
Q Consensus 450 ~~~~~ 454 (464)
++++.
T Consensus 382 ~~~~~ 386 (391)
T PRK04149 382 KKYGY 386 (391)
T ss_pred hhcCC
Confidence 98764
No 2
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-133 Score=1005.39 Aligned_cols=378 Identities=31% Similarity=0.500 Sum_probs=362.3
Q ss_pred ccCCCCCceeecccCchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCeee
Q 012433 53 LIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVN 132 (464)
Q Consensus 53 li~PhGg~Lv~l~v~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~p 132 (464)
+..||||+||++++.+.+ ..+.+..+|+|.|+.+.++||+||++|+||||+|||||+||+||+ ++|||+||++
T Consensus 3 ~~~phgg~Lv~r~~~~~~---~~~~~~~~~~ield~~~~~dl~lIa~G~fSPl~GFMne~dy~sVv--~~mRL~~G~~-- 75 (397)
T COG2046 3 LSPPHGGKLVRRVAEERD---AMKSIRKLPRIELDQNSFGDLELIAYGAFSPLTGFMNEKDYESVV--ESMRLANGTL-- 75 (397)
T ss_pred CCCCCcchhhhhhccccc---hHHHhccCceEEEchhhHHHHHHHHccCCCcccccccHHHHHHHH--HhccccCCCe--
Confidence 568999999999998766 556788999999999999999999999999999999999999999 7999999999
Q ss_pred cceeEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE
Q 012433 133 MSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL 212 (464)
Q Consensus 133 wpiPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v 212 (464)
|||||+|+|+++++.+++.||+|.|.+ +|.++|+|+|+|||++||+.+|.+||+|+|++||||+.++ .+|+++|||+|
T Consensus 76 w~iPItl~v~e~~a~~~~~Gd~i~L~~-~g~piavl~veevy~~dk~~eA~~v~~t~D~~HPgv~~l~-~~g~~~laG~i 153 (397)
T COG2046 76 WPIPITLDVSEEEAEELSVGDRILLTY-KGDPIAVLTVEEVYKPDKKLEAKNVFKTSDIKHPGVKKLY-DMGDYYLAGKI 153 (397)
T ss_pred eeeeeEecCchHhhhccCCCCEEEEcc-CCceEEEEEeeeecccCHHHHHHHhcCCCCCCCCceeeee-ccCCeEeeeeE
Confidence 599999999999999999999999998 9999999999999999999999999999999999999976 79999999999
Q ss_pred EEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC
Q 012433 213 EVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292 (464)
Q Consensus 213 ~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~ 292 (464)
++++.|.++ +|++|++||+|+|+.|+++||++|||||||||+||||||||| +|++.. ++||||||||.||+|
T Consensus 154 ~l~~~p~~~-~~~~~~~~P~~~R~~f~~kgwk~vvafQTRNp~HraHEyl~K----~Al~~v---dgllv~plVG~tk~g 225 (397)
T COG2046 154 ELINEPIFK-PFPKYWLTPAETREVFKEKGWKTVVAFQTRNPPHRAHEYLQK----RALEKV---DGLLVHPLVGATKPG 225 (397)
T ss_pred EEEecCCCC-CchhhccCHHHHHHHHHhcCCeEEEEEecCCCchHHHHHHHH----HHHHhc---CcEEEEeeeccccCC
Confidence 999988887 899999999999999999999999999999999999999997 567774 789999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCch
Q 012433 293 DVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADH 372 (464)
Q Consensus 293 Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~ 372 (464)
|+++++||++||++++ +|||+++++|+++|++|||||||||+|||||||||||||||||||||||| +|||+|+
T Consensus 226 D~~~e~rm~~ye~l~~-~Yyp~dr~~Ls~~~~aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAGvG------~yYg~Y~ 298 (397)
T COG2046 226 DIPDEVRMEYYEALLK-HYYPPDRVFLSVLPAAMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVG------DYYGPYD 298 (397)
T ss_pred CchHHHHHHHHHHHHH-hCCCCCcEEEEecHHHhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCCcc------ccCCccc
Confidence 9999999999999999 79999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhHHhhhCCCCCcceeeEeceEEEecCCCceeec--CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhh
Q 012433 373 GKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFF--DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYD 450 (464)
Q Consensus 373 aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~--~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~ 450 (464)
||+||+.++.+.||++++|+++|||++|++|+++ |||+.+++++||||++|+||++|+.||+|||||||+++|+++++
T Consensus 299 aq~if~~f~~eLgI~p~~f~e~~YC~~c~~~~~~~~cph~~~~~~~~SGt~lR~~Lr~G~~PP~~f~RPEV~~vl~k~~~ 378 (397)
T COG2046 299 AQEIFDEFSPELGITPVFFEEFFYCPKCGQMVSTKTCPHGDEHHLHISGTKLREMLRAGVKPPEEFSRPEVADVLRKSLF 378 (397)
T ss_pred HHHHHHhcccccCcEEEeccceeecccccCCcccccCCCCCcceEEEccHHHHHHHHcCCCCCcccccHHHHHHHHHhcc
Confidence 9999999975668999999999999999999996 99999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 012433 451 SLTP 454 (464)
Q Consensus 451 ~~~~ 454 (464)
....
T Consensus 379 ~~~~ 382 (397)
T COG2046 379 PYRL 382 (397)
T ss_pred cccc
Confidence 7743
No 3
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=100.00 E-value=5.6e-128 Score=1037.83 Aligned_cols=389 Identities=32% Similarity=0.496 Sum_probs=372.4
Q ss_pred ccCCCCCceeecccCchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCeee
Q 012433 53 LIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVN 132 (464)
Q Consensus 53 li~PhGg~Lv~l~v~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~p 132 (464)
+|+||||+|+||+|+++++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 1 ~~~p~gg~l~~~~~~~~~~~~~~~~a~~lp~i~i~~~~~~dlell~~G~~sPL~GfM~~~d~~~V~--~~~~l~~G~~-- 76 (568)
T PRK05537 1 LILPNGGPLPNLYVSPESREKLKAEALSLPSLDLSPRQICDLELLMNGGFSPLKGFMGRADYECVL--ENMRLADGTL-- 76 (568)
T ss_pred CCCCCCCcchhcccCHHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--
Confidence 489999999999999999999999999999999999999999999999999999999999999999 6999999998
Q ss_pred cceeEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE
Q 012433 133 MSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL 212 (464)
Q Consensus 133 wpiPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v 212 (464)
|||||||+|+++.+++|++|++|+|+|++|+++|+|+|+|+|++||++||++||||+|++||||++++.+.|+|+|||+|
T Consensus 77 wpiPi~L~v~~~~~~~l~~g~~v~L~~~~g~~~a~l~v~e~~~~dk~~~~~~vfgt~d~~HPgv~~~~~~~g~~~v~G~v 156 (568)
T PRK05537 77 WPIPITLDVSEKFAAGLEIGERIALRDQEGVLLAILTVSDIWEPDKEREAEAVFGTTDPAHPGVNYLHRWAGKFYLGGPL 156 (568)
T ss_pred cceeEEEeCCHHHHhhCCCCCEEEEECCCCcEEEEEEeeeEecCCHHHHHHHHhCCCCcCCccHHHHHhhcCCEEEEeeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999988656999999999
Q ss_pred EEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC
Q 012433 213 EVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292 (464)
Q Consensus 213 ~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~ 292 (464)
+++++|.|+ +|++||+||+|+|+.|+++||++|+|||||||+|||||+|||+| ++.. +++||||||||++|+|
T Consensus 157 ~~~~~~~~~-~f~~~r~tp~e~r~~f~~~gw~~v~afqtrnP~Hr~He~l~~~a----~~~~--d~~lll~p~~G~~k~~ 229 (568)
T PRK05537 157 TGIQLPVHY-DFVQLRLTPAELRARFRKLGWRRVVAFQTRNPLHRAHEELTKRA----AREV--GANLLIHPVVGMTKPG 229 (568)
T ss_pred EEEecCCCC-CchhhcCCHHHHHHHHHHcCCCcEEEEecCCCCcHHHHHHHHHH----HHhc--CCeEEEecCCCCCCCC
Confidence 999988887 59999999999999999999999999999999999999999854 4542 3589999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCch
Q 012433 293 DVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADH 372 (464)
Q Consensus 293 Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~ 372 (464)
|+|+++|||||+++++ + ||+++++|++||++|||||||||+||||||||||||||||||||||||.+.++.+|||+|+
T Consensus 230 d~~~~~r~~~~~~~~~-~-~p~~~~~l~~~p~~mryaGpreai~hAi~r~N~Gcth~ivGrdhAg~~~~~~~g~~Y~~~~ 307 (568)
T PRK05537 230 DIDHFTRVRCYEALLD-K-YPPATTLLSLLPLAMRMAGPREALWHAIIRRNYGCTHFIVGRDHAGPGKDSRGKPFYGPYD 307 (568)
T ss_pred CCCHHHHHHHHHHHHH-h-CCCCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCCCcCcccCCchH
Confidence 9999999999999999 5 9999999999999999999999999999999999999999999999999888889999999
Q ss_pred hhHHhhhCCCCCcceeeEeceEEEecCCCceeec--CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhh
Q 012433 373 GKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFF--DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYD 450 (464)
Q Consensus 373 aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~--~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~ 450 (464)
||+||++++++.+|+|++|+++|||++|++|++. |||++ ++++||||+||+||++|+.||+|||||||++||+++|+
T Consensus 308 a~~i~~~~~~~l~i~~~~~~~~~Y~~~~~~~~~~~~cph~~-~~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~ 386 (568)
T PRK05537 308 AQELFAKYADEIGITMVPFKEMVYVQDKAQYVPVDEVPQGA-TVLTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYP 386 (568)
T ss_pred HHHHHHhCccccCceEEecceeEEEcCCCeEEecCcCCCCc-ceeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhc
Confidence 9999999987889999999999999999999996 99988 69999999999999999999999999999999999999
Q ss_pred ccCCC
Q 012433 451 SLTPA 455 (464)
Q Consensus 451 ~~~~~ 455 (464)
+-.++
T Consensus 387 ~r~~~ 391 (568)
T PRK05537 387 PRHKQ 391 (568)
T ss_pred cccCC
Confidence 87544
No 4
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=100.00 E-value=1.5e-124 Score=958.96 Aligned_cols=351 Identities=45% Similarity=0.704 Sum_probs=333.9
Q ss_pred CCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCeeecceeEEEecCHHHHHhcCCCCeEEEeCC
Q 012433 81 LPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDS 160 (464)
Q Consensus 81 lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~pwpiPI~L~v~~e~~~~l~~g~~vaL~d~ 160 (464)
||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++ |||||||+|++|++++|++|++|+|+|
T Consensus 1 lp~i~i~~~~~~dlell~~G~fsPL~GFM~~~d~~~V~--~~~rL~~G~~--wpiPi~L~v~~e~~~~l~~g~~v~L~~- 75 (353)
T cd00517 1 LPSVELSERDLCDLEMLAEGGFSPLTGFMTEADYLSVL--EEMRLLDGTL--WPIPIVLDVSEEDAKRLKEGERVALRY- 75 (353)
T ss_pred CCeEEcCHHHHHHHHHHhcCCccCCccCCCHHHHHHHH--HhCcCCCCCC--cCeEEEEeCCHHHHhhcCCCCEEEEeE-
Confidence 69999999999999999999999999999999999999 6999999998 599999999999999999999999999
Q ss_pred CCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEeccCCCCCCCCcccCCHHHHHHHHHh
Q 012433 161 DDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSK 240 (464)
Q Consensus 161 eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~ 240 (464)
+|+++|+|+|+|+|++||++||++||||+|+.||||++++ +.|+|+|||+|++++++.++ +|++||+||+|+|+.|++
T Consensus 76 ~g~~~a~l~v~e~~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~v~~l~~~~~~-~f~~~r~tP~e~R~~f~~ 153 (353)
T cd00517 76 PGQPLAILTVEEIYEPDKEEEAARVFGTTDPHHPGVKKVM-EQGDWLVGGPIEVLELPPFP-DFDQYRLTPAELRALFKE 153 (353)
T ss_pred CCEEEEEEEeeeEecCCHHHHHHHHhCCCCCCChhHHHHH-hcCCEEEeeEEEEeecCCcC-CchhhcCCHHHHHHHHHH
Confidence 5999999999999999999999999999999999999876 67999999999999988887 699999999999999999
Q ss_pred CCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 012433 241 RNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVS 320 (464)
Q Consensus 241 ~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~ 320 (464)
+||++|||||||||+|||||+|||+| ++... +++||||||+|+||+||+|+++|||||+++++ +|+|+++++|+
T Consensus 154 ~gw~~VvafqtrnP~HraHe~l~~~a----~~~~~-~~~lll~plvG~~k~~d~~~~~r~~~~~~l~~-~y~~~~~~~l~ 227 (353)
T cd00517 154 RGWRRVVAFQTRNPMHRAHEELMKRA----AEKLL-NDGLLLHPLVGWTKPGDVPDEVRMRAYEALLE-EYYLPERTVLA 227 (353)
T ss_pred cCCCeEEEeecCCCCchhhHHHHHHH----HHHcC-CCcEEEEeccCCCCCCCCCHHHHHHHHHHHHH-hCCCCCcEEEE
Confidence 99999999999999999999999854 44420 37899999999999999999999999999999 79999999999
Q ss_pred ecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecCC
Q 012433 321 IFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQ 400 (464)
Q Consensus 321 ~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c 400 (464)
+||++||||||||||||||||||||||||||||||||||++ .+|||+|+||+||+.++++.+|+|++|++++||++|
T Consensus 228 ~lp~~mryAGPrEallhAiirkN~GcThfIvGrDHAG~g~~---~~yY~~y~aq~i~~~~~~~l~I~~v~~~~~~Yc~~c 304 (353)
T cd00517 228 ILPLPMRYAGPREALWHAIIRKNYGATHFIVGRDHAGVGHP---GDYYGPYDAQEIFKKLAPELGIEPVPFREAAYCPKC 304 (353)
T ss_pred eccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCc---cccCCcchhHHHHHhCcccCCceEEecceeEEecCC
Confidence 99999999999999999999999999999999999999976 699999999999999976578999999999999999
Q ss_pred Cceeec--CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 401 GKMAFF--DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 401 ~~~~~~--~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
++|++. |||+ +++++||||+||+||++|+.||+|||||||+++|++|
T Consensus 305 ~~~~~~~~cp~~-~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~~L~~~ 353 (353)
T cd00517 305 DGMASEDTCPHG-EDFLNISGTKLRKMLREGEKPPEWFMRPEVAKVLREY 353 (353)
T ss_pred CeEEecccCCCC-CceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHhhC
Confidence 999996 9964 4699999999999999999999999999999999985
No 5
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=100.00 E-value=1.1e-123 Score=961.75 Aligned_cols=380 Identities=39% Similarity=0.592 Sum_probs=364.1
Q ss_pred CCCCceeecccCch-hHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCeeecc
Q 012433 56 PDGGKLTELIVDKS-LRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMS 134 (464)
Q Consensus 56 PhGg~Lv~l~v~~~-~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~pwp 134 (464)
||||+|+||+|+++ ++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++ ||
T Consensus 1 phgg~l~~l~v~~~~~~~~l~~~a~~lp~i~i~~~~l~dlell~~G~fsPL~GfM~~~d~~~V~--~~~rL~~G~~--wp 76 (383)
T TIGR00339 1 PHGGKLVELIVRDPDIEHKLLAEAESLPSITLSDRQLCDLELLGNGAFSPLEGFMNEADYDSVV--EDMRLSDGVL--FS 76 (383)
T ss_pred CCCCcchhcccCchHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--cc
Confidence 89999999999987 6779999999999999999999999999999999999999999999999 6999999998 59
Q ss_pred eeEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEE
Q 012433 135 VPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEV 214 (464)
Q Consensus 135 iPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~ 214 (464)
|||||+|++|++++|++|++|+|+|++|+++|+|+|+|+|++||+++|++||||+|++||||++++ +.|+|+|||+|++
T Consensus 77 iPi~L~v~~e~~~~l~~g~~v~L~~~eg~~~a~l~v~ev~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~v~G~i~~ 155 (383)
T TIGR00339 77 VPITLDIDDEDADDIKLGDRILLTDDKGQPLAILTIEEVYKPNKTKEAKKVFGTTDPEHPGVVYLN-SAGNYYIGGPIEV 155 (383)
T ss_pred eeEEEeCCHHHHhhCCCCCeEEEECCCCCEEEEEEeeeeecCCHHHHHHHHhCCCCcCCccHHHHH-hcCCEEEEeEEEE
Confidence 999999999999999999999999977999999999999999999999999999999999999977 8999999999999
Q ss_pred eccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCC
Q 012433 215 LEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDV 294 (464)
Q Consensus 215 l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di 294 (464)
++++.|+ +|++||+||+|+|+.|+++||++|||||||||+||||++|++.| ++.. ..++|||+|++|++|+||+
T Consensus 156 l~~~~~~-~f~~~r~tP~e~r~~f~~~gw~~Vvafqt~nPiHr~H~~l~~~a----~e~l-~~d~lll~P~~g~~k~~~~ 229 (383)
T TIGR00339 156 INLPKFY-DFPRFRFTPAELREEFKERGWDTVVAFQTRNPMHRAHEELTKRA----ARSL-PNAGVLVHPLVGLTKPGDI 229 (383)
T ss_pred eecCCCC-CchhhcCCHHHHHHHHHHcCCCeEEEeccCCCCchHHHHHHHHH----HHHc-CCCeEEEEeCCCCCCCCCC
Confidence 9988885 69999999999999999999999999999999999999999854 4431 1378999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhh
Q 012433 295 PLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGK 374 (464)
Q Consensus 295 ~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq 374 (464)
++++|++||+++++ ||+++++++++++|++||||||||++||||+|||||||||||||||||+|+++++.+||++|+||
T Consensus 230 ~~~~R~~~~~~~~~-~~~~~~~~~l~~~~~em~~agpreall~Aiir~nyG~th~IiG~Dhag~g~~~~~~~~Y~~~~aq 308 (383)
T TIGR00339 230 PAEVRMRAYEVLKE-GYPNPERVMLTFLPLAMRYAGPREAIWHAIIRKNYGATHFIVGRDHAGPGSNSKGQDFYGPYDAQ 308 (383)
T ss_pred CHHHHHHHHHHHHh-hCCCCCceEEEecchHhhcCCcHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCccccCCCcchHH
Confidence 99999999999998 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCcceeeEeceEEEecCCCceeec--CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHH
Q 012433 375 KVLSMAPGLERLNILPFKVAAYDKTQGKMAFF--DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447 (464)
Q Consensus 375 ~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~--~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~ 447 (464)
+||++++++.+|+|++|++++||++|++|++. |||+++++++||||+||+||++|+.||+|||||||++||++
T Consensus 309 ~i~~~~~~~l~I~~v~~~~~~Yc~~c~~~~~~~~cph~~~~~~~~sgt~ir~~L~~G~~pP~~f~rpeV~~~L~~ 383 (383)
T TIGR00339 309 ELFEKYKAELGIKIVPFEHVAYCPDEDEYAPADQAGHTNLRTLNISGTKLRGMLREGVFPPEWFSRPEVVKILRE 383 (383)
T ss_pred HHHHhCccccCceEEecceeEEEcccCcEeecccCCCCccceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHhC
Confidence 99999987889999999999999999999996 99999999999999999999999999999999999999974
No 6
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.3e-91 Score=702.71 Aligned_cols=391 Identities=63% Similarity=1.105 Sum_probs=379.0
Q ss_pred ceeecccCchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCC-----Ceeecc
Q 012433 60 KLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDG-----SVVNMS 134 (464)
Q Consensus 60 ~Lv~l~v~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG-----~~~pwp 134 (464)
...+|+|+++....++.+|++||++.|++.+++|+++|++||..||+|||++.+|.+++||+. |-|| -..|++
T Consensus 231 ~v~elfv~e~~l~~~~~eae~lp~l~itkvdlqwvqvlaegwatpl~gfmrereylq~mhf~~--lld~khaf~g~in~s 308 (627)
T KOG4238|consen 231 DVHELFVPENKLDHVRAEAETLPSLSITKVDLQWVQVLAEGWATPLKGFMREREYLQVMHFDT--LLDGKHAFDGVINMS 308 (627)
T ss_pred HHHHHcCCccHHHHHHhhhccCCcceeeehhHHHHHHHHhhccccchhHHHHHHHHHHhhhhh--hhccccccccccccc
Confidence 356889999999999999999999999999999999999999999999999999999999764 4455 455899
Q ss_pred eeEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEE
Q 012433 135 VPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEV 214 (464)
Q Consensus 135 iPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~ 214 (464)
|||+|+++.|++++|..-.++||.+ +|+.+|||...|+|++.|+++|.+.|||+++.||.|+.+ +++|+|+|||++.+
T Consensus 309 ipivl~~s~e~k~~leg~t~~al~y-~g~~~ail~dpe~fehrkeer~~rq~gt~~~~hp~i~~v-mesg~wl~ggdl~v 386 (627)
T KOG4238|consen 309 IPIVLPVSAEDKTRLEGCTKFALAY-GGRRVAILRDPEFFEHRKEERCSRQWGTTCTKHPHIKMV-MESGDWLVGGDLQV 386 (627)
T ss_pred ccEEEecchhhhhccchhHHHHhhc-CCEEEEEecChHHhhhhhHHHHHHHhCCCCCCChHHHHH-HhcCCeeeccchhh
Confidence 9999999999999999999999998 999999999999999999999999999999999999975 48999999999999
Q ss_pred eccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCC
Q 012433 215 LEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDV 294 (464)
Q Consensus 215 l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di 294 (464)
++.+.|+|++++||+||.|+|+.|++++++.|+|||.|||+|+||..||++|++..||.|++++.||||||.||||.||+
T Consensus 387 l~ki~~ndgldqyr~tp~elk~~f~e~nadavfafqlrnpvhnghallm~dt~~~ll~~g~k~pvlllhplggwtkdddv 466 (627)
T KOG4238|consen 387 LEKIRWNDGLDQYRLTPLELKQKFKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDV 466 (627)
T ss_pred heeeeeccchhhhcCCHHHHHHHHHhhCcceEEEeeecCccccchhhHhHhHHHHHHHhcccCceEEEecCCCCccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhh
Q 012433 295 PLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGK 374 (464)
Q Consensus 295 ~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq 374 (464)
|.++||++++++++++++.|+.+++++||++|-||||.|.+|||-.|.-.|++|+|||||+||+.+|..+.|+|.+.++.
T Consensus 467 pl~~rmkqh~avl~e~vldpe~tvvaifpspmmyagptevqwh~rsrm~ag~~~yivgrdpagm~~pe~~~dlye~thga 546 (627)
T KOG4238|consen 467 PLDWRMKQHAAVLEEGVLDPESTVVAIFPSPMMYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGA 546 (627)
T ss_pred cchhhhHHHHHHHHhccCCccceEEEEcCCchhcCCchhhhhhHHHHhhccCeeEEeccCcCCCCCCCCCccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCcceeeEeceEEEecCCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhhccCC
Q 012433 375 KVLSMAPGLERLNILPFKVAAYDKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYDSLTP 454 (464)
Q Consensus 375 ~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~~~~~ 454 (464)
+++++.||+..++|+||+.++|.++.+.|.+.++..++++-+||||+||++.|+|+.||+.||.|..|++|.+||+++.+
T Consensus 547 kvlsmapgl~~l~i~pfrvaay~k~~k~m~f~d~~~~edfe~isgtrmr~lar~g~~ppegfmap~aw~vlt~yyksle~ 626 (627)
T KOG4238|consen 547 KVLSMAPGLTSLEIIPFRVAAYNKAKKAMDFYDPARHEDFEFISGTRMRKLAREGENPPEGFMAPKAWKVLTDYYKSLEK 626 (627)
T ss_pred eeeeecCCcceeeeeeeehhhhhhhhhhccccChhhhcccccccchhHHHHHhcCCCCCccccCchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
No 7
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=100.00 E-value=3e-85 Score=629.61 Aligned_cols=213 Identities=38% Similarity=0.622 Sum_probs=180.2
Q ss_pred CCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHH
Q 012433 224 LDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQH 303 (464)
Q Consensus 224 f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~y 303 (464)
|++||+||+|+|+.|+++||++|||||||||+|||||+|++.| +|.. .++||||||||++|+||+|+++|++||
T Consensus 1 f~~~r~tP~e~r~~~~~~gw~~VvafqtrnPlHraHe~l~~~a----~e~~--~~~lll~plvG~~k~~d~~~~~r~~~~ 74 (215)
T PF01747_consen 1 FRRYRLTPAETRELFKEKGWRRVVAFQTRNPLHRAHEYLMRRA----LEKA--GDGLLLHPLVGPTKPGDIPYEVRVRCY 74 (215)
T ss_dssp TCCTB--HHHHHHHHHHTT-SSEEEEEESS---HHHHHHHHHH----HHHH--TSEEEEEEBESB-STTSCCHHHHHHHH
T ss_pred CcchhCCHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHH----HHHh--cCcEEEEeccCCCCcCCCCHHHHHHHH
Confidence 6799999999999999999999999999999999999999854 4442 379999999999999999999999999
Q ss_pred HHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCC
Q 012433 304 EKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGL 383 (464)
Q Consensus 304 e~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~ 383 (464)
+++++ +|||+++++|++||++||||||||||||||||||||||||||||||||+| +|||+|+||+||++++++
T Consensus 75 ~~~~~-~y~p~~~v~l~~lp~~mr~aGPrEallhAiirkN~GcTh~IvGrdhAg~g------~~Y~~~~a~~i~~~~~~e 147 (215)
T PF01747_consen 75 EALID-NYFPKNRVLLSPLPLPMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVG------DFYDPYEAQEIFDEYAGE 147 (215)
T ss_dssp HHHHH-HCSSTTGEEEEBBESB---SHHHHHHHHHHHHHHTT-SEEEE-TTTT-SC------BSS-TTHHHHHHHHHHHH
T ss_pred HHHHH-HhCCCCcEEEeccCchhcccCcHHHHHHHHHHHHCCCceEEeCCcCCCcc------ccCCccHHHHHHHcCccc
Confidence 99999 59999999999999999999999999999999999999999999999999 999999999999998777
Q ss_pred CcceeeEeceEEEecCCCceeec--CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHh
Q 012433 384 ERLNILPFKVAAYDKTQGKMAFF--DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYY 449 (464)
Q Consensus 384 ~~i~i~~f~~~~Yc~~c~~~~~~--~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~ 449 (464)
.+|++++|++++||++|++|++. |||+.+++++||||+||+||++|+.||+|||||||+++|++||
T Consensus 148 l~I~~v~~~~~~Yc~~~~~~~~~~~cp~~~~~~~~iSgt~ir~~L~~G~~pP~~f~rpeV~~~L~~~Y 215 (215)
T PF01747_consen 148 LGIEPVPFPEMVYCPKCGQYVSAKTCPHGKHHHISISGTEIRELLREGEEPPEWFMRPEVAAILRRYY 215 (215)
T ss_dssp CTSEEEE---EEEETTTTEEEECGGSSTTTGGGEE--HHHHHHHHHTT----TTTS-HHHHHHHHHHC
T ss_pred CCceEEecceEEEEcCCCeEeeccccCCCCCcceeeCHHHHHHHHHCcCCCCCCcCcHHHHHHHHHhC
Confidence 79999999999999999999985 9999998899999999999999999999999999999999998
No 8
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-74 Score=578.87 Aligned_cols=454 Identities=50% Similarity=0.694 Sum_probs=430.6
Q ss_pred CccccccccCCCCCCCCCccCCcccccCCCCCCCcCccccccccccccccCCccCCCCCceeecccCchhHHHHHHHhcc
Q 012433 1 MATMSTLFAKTPLPSRSLSKSNISHFAPPLTSLSFKQKTTAPHFKLRSIRAGLIEPDGGKLTELIVDKSLRDVRKREAAT 80 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~PhGg~Lv~l~v~~~~~~~l~~ea~~ 80 (464)
|+|++.++.++|+.|.++.+.++ +.+...+++....|+ ..+.+.+.+++|.|.||+|++++|.+-++...++|+++
T Consensus 1 ~~ss~~~~~ntp~~~~~l~~~l~--~~~~~~~l~~~~~s~--~~~~lsv~s~li~Pdgg~l~el~v~e~k~~~kkae~~d 76 (466)
T KOG0636|consen 1 MASSDILVWNTPFQSCPLELILN--SSPLTGFLSENSYSS--VVRRLSVKSGLIIPDGGKLVELFVNEIKRRVKKAEAED 76 (466)
T ss_pred CCccceeecCCccccCchhhhcc--CCCCcceeccccchh--heeeeeccceeeccCCchHHHhhccccchhhhhhhhcc
Confidence 89999999999999999888777 444444454444433 44778888999999999999999999999999999999
Q ss_pred CCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCeeecceeEEEecCHHHHHhcCCCCeEEEeCC
Q 012433 81 LPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDS 160 (464)
Q Consensus 81 lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~pwpiPI~L~v~~e~~~~l~~g~~vaL~d~ 160 (464)
+|.|.|+..|+.|...+.+||.|||.|||.+.+|.+.+||+..||.||++.||++||+|+++++++..+....+|+|++.
T Consensus 77 ~p~i~l~~vdl~w~hv~segwasplrGfmre~e~lqtlhfn~~~l~~GS~vnmslPivlaidd~~K~~ig~s~~v~l~~~ 156 (466)
T KOG0636|consen 77 DPRIKLNTVDLEWVHVLSEGWASPLRGFMRESEFLQTLHFNSLRLVDGSVVNMSLPIVLAIDDDQKTPIGLSLEVQLVQS 156 (466)
T ss_pred CCceeeeeeeeEEeeecchhhhccccCcccchhHHhheeccceeecCceEEEeeccEEEecCcccccccccceeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCccccCCHH-HHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEeccCCCCCCCCcccCCHHHHHHHHH
Q 012433 161 DDNVVAILNDIEIYKHPKE-ERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFS 239 (464)
Q Consensus 161 eG~~lAiL~V~eiy~~Dk~-~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~ 239 (464)
+|.++|++...++|.+.|+ ++|++.|||+-+.||.|.......++|+++|+++++.+.+|+|+.++|+|.|.++|..+.
T Consensus 157 d~~~i~~lrn~~~~aH~e~t~R~Art~gatv~~~P~V~~t~~~~~d~l~~~~v~v~~~~rY~dGl~~~~L~P~amR~e~~ 236 (466)
T KOG0636|consen 157 DGNPIAILRNPMHRAHRELTVRAARTWGATVLIHPVVGETKPGDIDHLTRVRVYVLIPIRYPDGLARLSLLPLAMRMEGD 236 (466)
T ss_pred CCCeeeeecCHHhhhchHHHHHHHHHhCCccccccccceecCCCCcceeeeEEEEEEeeecCCchhhhcCChHHHhhhcc
Confidence 9999999999999999999 999999999999999999988889999999999999999999999999999999999999
Q ss_pred hCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEE
Q 012433 240 KRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVV 319 (464)
Q Consensus 240 ~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l 319 (464)
++++..+++||.|||.|.+|-.+|..++|..++++|+++.+++|||.|.||.+|||-.+||++++..+++ .|.|.+++.
T Consensus 237 r~~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~v~gytke~dipl~~~m~q~~~~~ED-v~dP~~tv~ 315 (466)
T KOG0636|consen 237 REAAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHLVEGYTKEDDIPLVPFMMQTYLPDED-VYDPEDTVV 315 (466)
T ss_pred hhhhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhhhhhcccccCCcccHHHhhhccchhh-hcCccceee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 888889999
Q ss_pred EecCCCcccCC-hhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchh--hHHhhhCCCCCcceeeEeceEEE
Q 012433 320 SIFPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHG--KKVLSMAPGLERLNILPFKVAAY 396 (464)
Q Consensus 320 ~~lp~~MryAG-PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~a--q~i~~~~~~~~~i~i~~f~~~~Y 396 (464)
+++|.+|.|+| |.|..||+-.|.|-|++..|||||.+|.|+|.++++||++.++ ++.+++.+++..++|.+|+.+.|
T Consensus 316 si~~~~l~~sGt~~~~r~~v~arI~e~~sy~~V~r~~~~~g~P~~kq~~~~a~~g~~k~vLsmAp~le~Lni~~~R~aa~ 395 (466)
T KOG0636|consen 316 SIFTRTLNISGTELRRRLRVGARIPEWFSYPEVVRILRGSGPPTEKQGFYDADHGATKKVLSMAPLLERLNILGFRVAAY 395 (466)
T ss_pred eccccceeecCCcceeeeeeccccCcccccceeeechhhcCCCcccCCceecCCccchheeccchhhHHhccCCeeEEEE
Confidence 99999999999 9999999999999999999999999999999999999999997 89999999988899999999999
Q ss_pred ecCCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhhccC-CCCCCCCCC
Q 012433 397 DKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYDSLT-PADNGKVPV 462 (464)
Q Consensus 397 c~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~~~~-~~~~~~~~~ 462 (464)
.+..++|+.++ ..++++++|||+||.+.+ ++.||+.||+|.+|++|.+||+++. ..+|+++++
T Consensus 396 ~~~~~kmaffd--~aQdfl~i~gtkm~~~a~-~edp~dg~~~p~~w~vlv~~~~dl~~e~~~~~ls~ 459 (466)
T KOG0636|consen 396 DKTQGKMAFFD--RAQDFLFIGGTKMRSLAK-LEDPDDGVMCPSGWKVLVDYYKDLQSEVGNAVLSE 459 (466)
T ss_pred eccCChhhHHH--HHHHHhhccceeEeechh-ccCCCcccccCcceEEEecchhhhhhhhcccchhh
Confidence 99999999987 678999999999999888 9999999999999999999999998 699998876
No 9
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=100.00 E-value=2.8e-54 Score=398.38 Aligned_cols=159 Identities=40% Similarity=0.681 Sum_probs=139.5
Q ss_pred cCCCCC-ceeecccCchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCeee
Q 012433 54 IEPDGG-KLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVN 132 (464)
Q Consensus 54 i~PhGg-~Lv~l~v~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~p 132 (464)
|.|||| +||||+|+++++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 1 i~PhGG~~Lv~~~~~~~~~~~~~~~a~~lp~i~l~~~~~~dleli~~G~fsPL~GFM~~~dy~~V~--~~~rL~~G~~-- 76 (160)
T PF14306_consen 1 IEPHGGKKLVNLVVPEDEREELKEEAESLPSIELSKRQLCDLELIANGAFSPLTGFMNEEDYESVL--ETMRLPDGTL-- 76 (160)
T ss_dssp ---TTSSS--BHBHHTGGHHHHHHHHTTSEEEEE-HHHHHHHHHHHTTTTTT-SEE--HHHHHHHH--HHSBETTSSB--
T ss_pred CcCCCCCcccccccCHHHHHHHHHHHhhCCeEEeCHHHHHHHHHHhcCCCCCCccccCHHHHHHHH--hhCCcCCCCE--
Confidence 689999 99999999999999999999999999999999999999999999999999999999999 6999999999
Q ss_pred cceeEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE
Q 012433 133 MSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL 212 (464)
Q Consensus 133 wpiPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v 212 (464)
|||||||+|+++++++++.|++|+|+|++|+++|+|+|+|+|++||++||++||||+|++||||++++ ++|+|+|||+|
T Consensus 77 wpiPI~L~v~~e~~~~l~~G~~v~L~~~~G~~~a~l~V~evy~~dk~~ea~~vfgT~d~~HPgV~~~~-~~g~~~vgG~i 155 (160)
T PF14306_consen 77 WPIPIVLDVSEEEAKSLKEGDKVALRDPEGKPVAILEVEEVYEPDKEEEAEKVFGTTDPAHPGVAKLY-ERGDYYVGGKI 155 (160)
T ss_dssp --S---EEECHHHHTTCTTTSEEEEEETTTEEEEEEEEEEEEEECHHHHHHHHHSS-TTTSHHHHHHH-TS-SEEEEEEE
T ss_pred EeEEEEEECCHHHHHhccCCCEEEEECCCCCEEEEEEeCeeecCCHHHHHHHhhCCCCCCChHHHHHH-hcCCEEEeeEE
Confidence 59999999999999999999999999988999999999999999999999999999999999999987 89999999999
Q ss_pred EEecc
Q 012433 213 EVLEP 217 (464)
Q Consensus 213 ~~l~~ 217 (464)
+++++
T Consensus 156 ~~l~~ 160 (160)
T PF14306_consen 156 EVLNR 160 (160)
T ss_dssp EESS-
T ss_pred EEEeC
Confidence 99874
No 10
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-54 Score=435.91 Aligned_cols=350 Identities=23% Similarity=0.252 Sum_probs=320.0
Q ss_pred ChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCeeecceeEEEecCHHHHHhcCCCCeEEEeCCCCcEEE
Q 012433 87 TKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVA 166 (464)
Q Consensus 87 ~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~pwpiPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lA 166 (464)
++.++|+|+++.+ +||++||+++.+|.+|. .||++|+. |.+|+.+++.+-.+..++.+.+.++-- +...++
T Consensus 11 tp~~~~~l~~~l~--~~~~~~~l~~~~~s~~~----~~lsv~s~--li~Pdgg~l~el~v~e~k~~~kkae~~-d~p~i~ 81 (466)
T KOG0636|consen 11 TPFQSCPLELILN--SSPLTGFLSENSYSSVV----RRLSVKSG--LIIPDGGKLVELFVNEIKRRVKKAEAE-DDPRIK 81 (466)
T ss_pred CccccCchhhhcc--CCCCcceeccccchhhe----eeeeccce--eeccCCchHHHhhccccchhhhhhhhc-cCCcee
Confidence 8999999999999 99999999999999996 68999999 599999999999999999999999974 667999
Q ss_pred EEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeE
Q 012433 167 ILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAV 246 (464)
Q Consensus 167 iL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~V 246 (464)
+.+|+..|.+.+.++++.+++. +..||..-++++=.+.++++|.++-++-|.+. +++..+.||.+.+..++-..|+.+
T Consensus 82 l~~vdl~w~hv~segwasplrG-fmre~e~lqtlhfn~~~l~~GS~vnmslPivl-aidd~~K~~ig~s~~v~l~~~d~~ 159 (466)
T KOG0636|consen 82 LNTVDLEWVHVLSEGWASPLRG-FMRESEFLQTLHFNSLRLVDGSVVNMSLPIVL-AIDDDQKTPIGLSLEVQLVQSDGN 159 (466)
T ss_pred eeeeeeEEeeecchhhhccccC-cccchhHHhheeccceeecCceEEEeeccEEE-ecCcccccccccceeEEEecCCCC
Confidence 9999999999999999999974 78899999988888999999999999944443 688999999999999999999999
Q ss_pred EEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 012433 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPM 326 (464)
Q Consensus 247 vafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~M 326 (464)
++||+|||+||+|.+++. |+|.+.| +-.++||+||.+|++|+++.+|++.|+..+. -||.+-..++++|++|
T Consensus 160 ~i~~lrn~~~~aH~e~t~---R~Art~g---atv~~~P~V~~t~~~~~d~l~~~~v~v~~~~--rY~dGl~~~~L~P~am 231 (466)
T KOG0636|consen 160 PIAILRNPMHRAHRELTV---RAARTWG---ATVLIHPVVGETKPGDIDHLTRVRVYVLIPI--RYPDGLARLSLLPLAM 231 (466)
T ss_pred eeeeecCHHhhhchHHHH---HHHHHhC---CccccccccceecCCCCcceeeeEEEEEEee--ecCCchhhhcCChHHH
Confidence 999999999999999954 4667776 7899999999999999999999999998777 6899999999999999
Q ss_pred ccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecCCCceeec
Q 012433 327 HYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFF 406 (464)
Q Consensus 327 ryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~ 406 (464)
|++|+|||+||||+|||||+.|||+||||||+|....+-+||+||++|.++..|..+.+|.+++|..+-|-...+.|.+.
T Consensus 232 R~e~~r~~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~v~gytke~dipl~~~m~q~~~~~EDv~dP~ 311 (466)
T KOG0636|consen 232 RMEGDREAAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHLVEGYTKEDDIPLVPFMMQTYLPDEDVYDPE 311 (466)
T ss_pred hhhcchhhhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhhhhhcccccCCcccHHHhhhccchhhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999987789999999999999888887776
Q ss_pred CCC--CCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhhccCCC
Q 012433 407 DPS--RAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYDSLTPA 455 (464)
Q Consensus 407 ~ph--~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~~~~~~ 455 (464)
+.. -.-...+||||++|+.++.|-.||+||++|||.++++..+....++
T Consensus 312 ~tv~si~~~~l~~sGt~~~~r~~v~arI~e~~sy~~V~r~~~~~g~P~~kq 362 (466)
T KOG0636|consen 312 DTVVSIFTRTLNISGTELRRRLRVGARIPEWFSYPEVVRILRGSGPPTEKQ 362 (466)
T ss_pred ceeeeccccceeecCCcceeeeeeccccCcccccceeeechhhcCCCcccC
Confidence 433 2346789999999999999999999999999999999987766544
No 11
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=98.93 E-value=7.1e-09 Score=91.04 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=69.6
Q ss_pred ecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCC----CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCC
Q 012433 250 QLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK----ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSP 325 (464)
Q Consensus 250 QTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK----~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~ 325 (464)
=+-||+|+||.+|++.| .+.+ .+.++|.|.....+ ...++.+.|++..+++.+ + +..++++.
T Consensus 6 G~Fdp~H~GH~~ll~~a----~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~------~--~~~v~~~~ 71 (143)
T cd02039 6 GRFEPFHLGHLKLIKEA----LEEA--LDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKEILK------D--RLKVVPVD 71 (143)
T ss_pred eccCCcCHHHHHHHHHH----HHHc--CCceEEEEcCCChhhcccccCCCHHHHHHHHHHhcc------C--CcEEEEEe
Confidence 38899999999998754 4442 25688888777654 378999999999987764 1 12234455
Q ss_pred cccCChhHHH-HHHHHHHHcCCceeeecCCCCC
Q 012433 326 MHYAGPTEVQ-WHAKARINAGANFYIVGRDPAG 357 (464)
Q Consensus 326 MryAGPREAl-lHAiiRkNyGcTHfIVGRDHAG 357 (464)
+.+..+..+. +...+.++++|+++++|.|+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~v~G~d~~~ 104 (143)
T cd02039 72 FPEVKILLAVVFILKILLKVGPDKVVVGEDFAF 104 (143)
T ss_pred cChhhccCHHHHHHHHHHHcCCcEEEECCcccc
Confidence 5555556665 7778889999999999999984
No 12
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.52 E-value=8.1e-06 Score=83.04 Aligned_cols=160 Identities=14% Similarity=0.066 Sum_probs=99.5
Q ss_pred HHHHHHHHH-hCCCCeEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHH
Q 012433 231 PAQLRDEFS-KRNADAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLE 308 (464)
Q Consensus 231 P~e~R~~f~-~~gw~~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~ 308 (464)
..-+++..+ +++.++|+|.. +-||+|+||..+++.| ++.- .-..++|.| .+...++.+.|++..+..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~FDPiH~GHl~ii~~a----~~~~-d~~~V~i~~----~~~~~~~~e~R~~ml~~ai~ 170 (297)
T cd02169 100 EDYLKNLPKPDQPGKKIAAIVMNANPFTLGHRYLVEKA----AAEN-DWVHLFVVS----EDKSLFSFADRFKLVKKGTK 170 (297)
T ss_pred HHHHHHHHhhccCCCceEEEEecCCCCchHHHHHHHHH----HhhC-CeEEEEEEc----CCCCCCCHHHHHHHHHHHhC
Confidence 444555556 78889999999 8999999999998754 4441 012233433 35667999999999999998
Q ss_pred cCCCCCCceEEEecCCCcccC--------------------ChhHHHHHHHHHHHcCCceeeecCCCC-CCCCCCCCCCC
Q 012433 309 DGVLDPETTVVSIFPSPMHYA--------------------GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPVEKRDL 367 (464)
Q Consensus 309 ~~y~p~~~~~l~~lp~~MryA--------------------GPREAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~~~~~ 367 (464)
+ +|. -.+++.-.+..-|+ .|.+= .+ ++.+-++|.+++||-|+. |-+
T Consensus 171 ~--~~~-v~v~~~~~l~v~~~~~~~~~~~~~~~~~~~~a~lsa~~F-i~-iL~~~l~~~~ivvG~Df~FG~~-------- 237 (297)
T cd02169 171 H--LKN-VTVHSGGDYIISSATFPSYFIKEQDVVIKAQTALDARIF-RK-YIAPALNITKRYVGEEPFSRVT-------- 237 (297)
T ss_pred C--CCC-EEEEecCCeeeccccChhhhcCChhHHHHHHhcCCHHHH-HH-HHHHHcCCcEEEEcCCCCCCCc--------
Confidence 3 343 22223222222221 34443 46 888899999999999975 322
Q ss_pred CCCchhhHHhhhCCCCCcceeeEeceEEEecCCCceeecCCCCCcceeecCHHHHHHHHHCCCC
Q 012433 368 YDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKEN 431 (464)
Q Consensus 368 Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~ 431 (464)
.... ..+... ....|++++..+.. .. .+ ..||.|.||++|++|..
T Consensus 238 -r~G~-~~l~~~-~~~~gf~v~~v~~~------------~~-~g---~~ISST~IR~~l~~G~v 282 (297)
T cd02169 238 -AIYN-QTMQEE-LLSPAIEVIEIERK------------KY-DG---QPISASTVRQLLKEGNL 282 (297)
T ss_pred -chhH-HHHHHh-cccCCCEEEEeccc------------cc-CC---cEEcHHHHHHHHHcCCH
Confidence 0111 334433 22235555543221 11 12 25999999999999973
No 13
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=98.10 E-value=0.00017 Score=66.68 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=93.3
Q ss_pred EEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 012433 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPM 326 (464)
Q Consensus 247 vafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~M 326 (464)
+-.=|-||+|.||..+.+ .|.+.+ +-|++-|..-+.|...++.+.|++-.+..++ .+| .+.+..+.
T Consensus 5 i~gGsFdP~H~GHl~~~~----~a~~~~---d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~--~~~--~v~v~~~e--- 70 (159)
T PRK00168 5 IYPGSFDPITNGHLDIIE----RASRLF---DEVIVAVAINPSKKPLFSLEERVELIREATA--HLP--NVEVVSFD--- 70 (159)
T ss_pred EEeeecCCCCHHHHHHHH----HHHHHC---CEEEEEECCCCCCCCCCCHHHHHHHHHHHHc--CCC--CEEEecCC---
Confidence 333489999999999976 355663 5677755444556778999999999998887 333 34444332
Q ss_pred ccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhC-CCCCcceeeEeceEEEecCCCceee
Q 012433 327 HYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMA-PGLERLNILPFKVAAYDKTQGKMAF 405 (464)
Q Consensus 327 ryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~-~~~~~i~i~~f~~~~Yc~~c~~~~~ 405 (464)
-| ..+ .-+-+++++|+.|=| .+++...-.++...- ++...++.+ |.
T Consensus 71 ~~--t~~------~~~~~~~~~~~~gl~-----------~w~d~e~~~~~~~~~r~~~~~~~~i------~~-------- 117 (159)
T PRK00168 71 GL--LVD------FAREVGATVIVRGLR-----------AVSDFEYEFQMAGMNRKLAPEIETV------FL-------- 117 (159)
T ss_pred cc--HHH------HHHHcCCCEEEecCc-----------chhhHHHHHHHHHhCCCCCCCCcEE------EE--------
Confidence 11 111 235678999987755 222221111111111 111111111 11
Q ss_pred cCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhh
Q 012433 406 FDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYD 450 (464)
Q Consensus 406 ~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~ 450 (464)
. .......||+|.||++++.|. +...|..+.|.+.|.+.++
T Consensus 118 ~---~~~~~~~ISST~IR~~i~~g~-~i~~lVP~~V~~yI~~~~~ 158 (159)
T PRK00168 118 M---PSPEYSFISSSLVKEVARLGG-DVSGFVPPAVAKALKEKFA 158 (159)
T ss_pred e---CCCCcceecHHHHHHHHHcCC-ChhHHCCHHHHHHHHHHhc
Confidence 1 111224699999999999997 6789999999999988765
No 14
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=98.00 E-value=0.00017 Score=66.27 Aligned_cols=145 Identities=18% Similarity=0.179 Sum_probs=87.9
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAG 330 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAG 330 (464)
|-||+|.||..+.+. |.+.. +-|++-|..-..|..-++.+.|++-.+.++++ .| .+.+..+.
T Consensus 7 sFdP~H~GHl~l~~~----a~~~~---d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~~--~~--~~~v~~~e------- 68 (153)
T cd02163 7 SFDPITNGHLDIIER----ASKLF---DEVIVAVAVNPSKKPLFSLEERVELIREATKH--LP--NVEVDGFD------- 68 (153)
T ss_pred ccCCCCHHHHHHHHH----HHHHC---CEEEEEEcCCCCCCCCCCHHHHHHHHHHHHcC--CC--CEEecCCc-------
Confidence 789999999999864 44553 56777776555566779999999999988873 33 33333321
Q ss_pred hhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhC-CCCCcceeeEeceEEEecCCCceeecCCC
Q 012433 331 PTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMA-PGLERLNILPFKVAAYDKTQGKMAFFDPS 409 (464)
Q Consensus 331 PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~-~~~~~i~i~~f~~~~Yc~~c~~~~~~~ph 409 (464)
-+-.-.-+-+++.+||+|-| .+++-..-.++.... ++.. ++..+...+
T Consensus 69 ----s~t~~~l~~l~~~~~i~G~d-----------~~~~~e~~~~~~~~~r~~~~--------------~~~~i~~~~-- 117 (153)
T cd02163 69 ----GLLVDFARKHGANVIVRGLR-----------AVSDFEYEFQMAGMNRKLAP--------------EIETVFLMA-- 117 (153)
T ss_pred ----chHHHHHHHcCCCEEEECCc-----------chhhHHHHHHHHHhCCCCCC--------------CCcEEEEeC--
Confidence 11122236779999999977 333332111111111 1110 111111111
Q ss_pred CCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHH
Q 012433 410 RAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLV 446 (464)
Q Consensus 410 ~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~ 446 (464)
......+|+|.||+++++|.. ...+..+.|.+-|.
T Consensus 118 -~~~~~~iSST~IR~~~~~g~~-i~~lvP~~V~~yI~ 152 (153)
T cd02163 118 -SPEYSFISSSLVKEIARFGGD-VSGFVPPVVAKALK 152 (153)
T ss_pred -CCccceecHHHHHHHHHcCCC-hhHhCCHHHHHHHh
Confidence 112234999999999999975 47788888888764
No 15
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=97.92 E-value=0.0002 Score=68.08 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=83.9
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCC------ceEEEecCC
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPE------TTVVSIFPS 324 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~------~~~l~~lp~ 324 (464)
+.||+|+||..+.+.+ ++.- ...-+++-|- +..-++.+.|++..+..+++ +|.= ...+..+-.
T Consensus 7 ~~DPiH~GHl~i~~~a----~~~~-d~~~V~v~p~----~~~~~s~e~R~~Mi~~a~~~--~~~v~v~~~~~~~v~~~~~ 75 (182)
T smart00764 7 NANPFTLGHRYLVEQA----AAEC-DWVHLFVVSE----DASLFSFDERFALVKKGTKD--LDNVTVHSGSDYIISRATF 75 (182)
T ss_pred CCCCCCHHHHHHHHHH----HHHC-CceEEEEEeC----CCCCCCHHHHHHHHHHHhcc--CCCEEEEecCCceeccccC
Confidence 7899999999998754 3431 1123444443 55678999999999999873 2321 111121222
Q ss_pred Cccc-----------C--ChhHHHHHHHHHHHcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeE
Q 012433 325 PMHY-----------A--GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPVEKRDLYDADHGKKVLSMAPGLERLNILP 390 (464)
Q Consensus 325 ~Mry-----------A--GPREAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~ 390 (464)
+-.| | .|.+=+ + ++.+.+++.|++||.|+. |-+ .-.+ .+.+..+. ..++++.+
T Consensus 76 ~~~~~~~~~~~~~~~a~lsa~~Fi-~-~L~~~l~~~~ivvG~df~FG~~------~~G~----~~~L~~~~-~~g~~v~~ 142 (182)
T smart00764 76 PSYFLKEQDVVIKSQTTLDLRIFR-K-YIAPALGITHRYVGEEPFSPVT------AIYN----QTMKQTLL-SPAIEVVE 142 (182)
T ss_pred hhhhcCchhHHHHHHhcCCHHHHH-H-HHHHHcCceEEEEcCCCCCCCC------CccC----HHHHHHHh-hCCCEEEE
Confidence 2233 2 454433 5 578889999999999965 332 1111 23333332 23566666
Q ss_pred eceEEEecCCCceeecCCCCCcceeecCHHHHHHHHHCCC
Q 012433 391 FKVAAYDKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKE 430 (464)
Q Consensus 391 f~~~~Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~ 430 (464)
.+..-+ . -..+|+|.||++|.+|.
T Consensus 143 I~r~~~-------------~---g~~iSST~IR~~L~~G~ 166 (182)
T smart00764 143 IERKKA-------------N---GQPISASTVRKLLKEGN 166 (182)
T ss_pred EecccC-------------C---CcEECHHHHHHHHHcCC
Confidence 532111 1 22599999999999997
No 16
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=97.90 E-value=0.0005 Score=65.29 Aligned_cols=154 Identities=17% Similarity=0.152 Sum_probs=90.0
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccC---CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG---YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG---~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~Mr 327 (464)
+-||+|.||..+++. |++.. +-|+|.+--. .++..-++.+.|++-.+..+.+.=++.+++.+..+|...
T Consensus 7 rF~P~H~GHl~~i~~----a~~~~---~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~~- 78 (181)
T cd02168 7 RFQPFHNGHLAVVLI----ALEKA---KKVIILIGSARTARNIKNPWTSEEREVMIEAALSDAGADLARVHFRPLRDHL- 78 (181)
T ss_pred ccCCCCHHHHHHHHH----HHHHC---CeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCCC-
Confidence 567999999999874 45552 4455433122 355677999999999998887433466677777666631
Q ss_pred cCChhHHHHHHHHHHHcCCceeeecC-CCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecCCCceeec
Q 012433 328 YAGPTEVQWHAKARINAGANFYIVGR-DPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFF 406 (464)
Q Consensus 328 yAGPREAllHAiiRkNyGcTHfIVGR-DHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~ 406 (464)
..+..|-+-+++.--. ++-+. |-+=+|++.++..||- ..|+++.|. .
T Consensus 79 ---~~~~~W~~~v~~~v~~--~~~~~~~i~~~g~~kd~~~~~~-------------------~lfpe~~~~-~------- 126 (181)
T cd02168 79 ---YSDNLWLAEVQQQVLE--IAGGSASVGLVGHRKDASSYYL-------------------RSFPQWDYL-E------- 126 (181)
T ss_pred ---CChHHHHHHHHHhChH--hhCCCCcEEEeCCccCCCccce-------------------eecCCcCee-c-------
Confidence 3577898766533211 11110 1111121111122331 223333232 1
Q ss_pred CCCCCcceeecCHHHHHHHHHCC-CCCCCCccchHHHHHHHHH
Q 012433 407 DPSRAKDFLFISGTKMRTLARSK-ENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 407 ~ph~~~~~~~iSGT~vR~~L~~G-~~pP~~f~rPeV~~iL~~~ 448 (464)
+|. .-.||+|.||+++.+| ......+..|.|++.|.+.
T Consensus 127 ~p~----~~~iSsT~IR~~i~~~~g~~~~~lvP~~V~~~I~~~ 165 (181)
T cd02168 127 VPN----YPDLNATDIRRAYFEGKEAMYRAALPAGVYDFLTAF 165 (181)
T ss_pred Ccc----ccccCHHHHHHHHHhcCCCChhHhCCHHHHHHHHHh
Confidence 111 1269999999999995 2345567889999988876
No 17
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=97.82 E-value=0.00048 Score=65.13 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=99.7
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCC-C-CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCccc
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-K-ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHY 328 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~t-K-~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~Mry 328 (464)
|-||+|.||..+++.| .+.. ..+-+++-|-.... | ..-.+.+.|++-.+.+++. .| . +.+-+...+-
T Consensus 7 sFdP~H~GH~~~~~~a----~~~~-~~d~v~~~~~~~~~~k~~~~~~~~~R~~m~~~~~~~--~~--~--i~v~~~e~~~ 75 (192)
T cd02165 7 SFDPPHLGHLAIAEEA----LEEL-GLDRVLLLPSANPPHKPPKPASFEHRLEMLKLAIED--NP--K--FEVSDIEIKR 75 (192)
T ss_pred CCCCCCHHHHHHHHHH----HHHc-CCCEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHcC--CC--C--EEEeHHHHhC
Confidence 7899999999998754 3431 12457777765543 3 3779999999999988872 23 3 3444555555
Q ss_pred CChhHHH--HHHHHHHHcC-Cc-eeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEE--------
Q 012433 329 AGPTEVQ--WHAKARINAG-AN-FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAY-------- 396 (464)
Q Consensus 329 AGPREAl--lHAiiRkNyG-cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y-------- 396 (464)
.||.-.+ +-.+ ++.|+ +. .||+|-|.--=- ..+| .+++|++.+. + +.+..-.|
T Consensus 76 ~~~~~t~~tl~~l-~~~~p~~~~~~liG~D~l~~~-----~~W~---~~~~i~~~~~----~--iv~~R~g~~~~~~~~~ 140 (192)
T cd02165 76 DGPSYTIDTLEEL-RERYPNAELYFIIGSDNLIRL-----PKWY---DWEELLSLVH----L--VVAPRPGYPIEDASLE 140 (192)
T ss_pred CCCCCHHHHHHHH-HHhccCCCEEEEEcHHHhhhc-----cccc---CHHHHHHhCc----E--EEEeCCCCCcccchhh
Confidence 6665443 3333 44464 55 688899854211 1233 3477776532 1 11111011
Q ss_pred --ecCCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 397 --DKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 397 --c~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
...++.+... ......+|.|+||+.+++|..+ ..+..++|.+.|.+.
T Consensus 141 ~~~~~~~~~~~~----~~~~~~iSST~IR~~~~~g~~~-~~lvp~~V~~yI~~~ 189 (192)
T cd02165 141 KLLLPGGRIILL----DNPLLNISSTEIRERLKNGKSI-RYLLPPAVADYIKEH 189 (192)
T ss_pred hhccCCCcEEEe----cCCccccCHHHHHHHHHcCCCh-hHhCCHHHHHHHHHc
Confidence 1111111111 1123579999999999999764 478999999988753
No 18
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=97.78 E-value=0.00072 Score=62.23 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=89.3
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAG 330 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAG 330 (464)
|-||+|.||..+.+. |.+.. +-|++-|..-+.|...++.+.|++-.+..+++ +| .+.+..+. +
T Consensus 7 sFdP~H~GHl~l~~~----a~~~~---d~v~~~~~~~p~k~~~~~~~~R~~m~~~a~~~--~~--~~~v~~~e------~ 69 (155)
T TIGR01510 7 SFDPVTNGHLDIIKR----AAALF---DEVIVAVAKNPSKKPLFSLEERVELIKDATKH--LP--NVRVDVFD------G 69 (155)
T ss_pred ecCCCcHHHHHHHHH----HHHhC---CEEEEEEcCCCCCCCCcCHHHHHHHHHHHHhh--CC--CeEEcCcc------c
Confidence 789999999999864 45553 66777777556677789999999999988873 34 34444444 1
Q ss_pred hhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecCCCceeecCCCC
Q 012433 331 PTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFDPSR 410 (464)
Q Consensus 331 PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~~ph~ 410 (464)
. -.=.-+-+...+||.|-|.- ++- +++++... ... ... ..+..+...+
T Consensus 70 y-----t~dt~~~l~~~~~i~G~~~~-----------~~~---~~~~~~~~-~~r----~~~-----~~~~~i~~~~--- 117 (155)
T TIGR01510 70 L-----LVDYAKELGATFIVRGLRAA-----------TDF---EYELQMAL-MNK----HLA-----PEIETVFLMA--- 117 (155)
T ss_pred h-----HHHHHHHcCCCEEEecCcch-----------hhH---HHHHHHHh-hCc----ccc-----cCCcEEEEeC---
Confidence 1 11123455678898776632 211 12332210 000 000 0011111111
Q ss_pred CcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHH
Q 012433 411 AKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447 (464)
Q Consensus 411 ~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~ 447 (464)
......+|+|.||++++.|+. ...+..++|++-|.+
T Consensus 118 ~~~~~~iSST~IR~~i~~g~~-~~~lvP~~V~~YI~~ 153 (155)
T TIGR01510 118 SPEYAFVSSSLVKEIASFGGD-VSNLVPPAVARRLKA 153 (155)
T ss_pred CcchhhccHHHHHHHHHcCCC-hhHHCCHHHHHHHHH
Confidence 112236999999999999975 577999999998865
No 19
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=97.76 E-value=0.001 Score=62.41 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=90.4
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEe-cccCC--CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH-PLGGY--TKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~-PlvG~--tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~Mr 327 (464)
+-||+|.||..+++. |++. ++-|+|- +--.. ++..-++++.|++-.+..++ ..+..++.+.+++. .
T Consensus 7 ~FdP~H~GHl~ii~~----a~~~---~D~lii~i~s~~~~~k~~~p~~~~eR~~mi~~al~--~~~~~~~~~vP~~d--~ 75 (165)
T TIGR01527 7 RFQPFHLGHLEVIKK----IAEE---VDELIIGIGSAQESHTLENPFTAGERILMITQSLK--EVGDLTYYIIPIED--I 75 (165)
T ss_pred ccCCCCHHHHHHHHH----HHHH---CCEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCCceEEEEecCC--c
Confidence 567999999999874 4555 3556553 22221 23567889999999987777 23423333333432 1
Q ss_pred cCChhHHHHHHHHHHHcCC-ceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecCCCceeec
Q 012433 328 YAGPTEVQWHAKARINAGA-NFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFF 406 (464)
Q Consensus 328 yAGPREAllHAiiRkNyGc-THfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~ 406 (464)
.....|-+.++.--.- +. -|.+...-+++|++. |++++.++
T Consensus 76 ---~~~~~w~~~v~~~~p~~D~-----------------vf~~~~~~~~~f~e~----g~~v~~~p-------------- 117 (165)
T TIGR01527 76 ---ERNSIWVSYVESMTPPFDV-----------------VYSNNPLVRRLFKEA----GYEVKRPP-------------- 117 (165)
T ss_pred ---cHHHHHHHHHHHhCCCCCE-----------------EEECCHHHHHHHHHc----CCEEEECC--------------
Confidence 2577898888744331 11 223323336666643 45555441
Q ss_pred CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 407 DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 407 ~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
. -++..+|||+||+++.+|+. =+.+..|.|+++|.+.
T Consensus 118 --~--~~r~~~S~T~IR~~i~~~~~-W~~lVP~~v~~~i~~i 154 (165)
T TIGR01527 118 --M--FNRKEYSGTEIRRRMLNGED-WEHLVPKAVADVIKEI 154 (165)
T ss_pred --C--cCCCcccHHHHHHHHHcCCC-hhhhCCHHHHHHHHHc
Confidence 0 01226899999999999977 6678999999999874
No 20
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=97.75 E-value=0.00035 Score=72.22 Aligned_cols=147 Identities=15% Similarity=0.191 Sum_probs=96.1
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccC---CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG---YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG---~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~Mr 327 (464)
+-||+|.||..+++. |++.. +-|+|.|-.. .++.+-++++.|++-.+..++ + ++..++.+..+|...
T Consensus 14 ~F~P~H~GHl~~i~~----a~~~~---d~l~v~i~s~~~~~~~~~~~~~~~R~~mi~~~~~-~-~~~~r~~~~pi~d~~- 83 (340)
T PRK05379 14 RFQPFHNGHLAVIRE----ALSRA---KKVIVLIGSADLARSIKNPFSFEERAQMIRAALA-G-IDLARVTIRPLRDSL- 83 (340)
T ss_pred ccCCCCHHHHHHHHH----HHHHC---CEEEEEEccCCCCCcCCCCCCHHHHHHHHHHHhh-c-CCCceEEEEECCCCC-
Confidence 789999999999874 55552 5677766322 355677999999999999987 3 566677777666632
Q ss_pred cCChhHHHHHHHHHHHc------CCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecCCC
Q 012433 328 YAGPTEVQWHAKARINA------GANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQG 401 (464)
Q Consensus 328 yAGPREAllHAiiRkNy------GcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~ 401 (464)
.++.+|-+-|++.- ..+-.++|.|-. ...|| +..|++ +-|..
T Consensus 84 ---~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~-------~~~~~--------~~~f~~-----------~~~~~--- 131 (340)
T PRK05379 84 ---YNDSLWLAEVQAAVAEHAGADARIGLIGHEKD-------ASSYY--------LRSFPQ-----------WELVD--- 131 (340)
T ss_pred ---cChHHHHHHHHHHHHhccCCCCcEEEECCcCC-------CChHH--------HHhccc-----------ccccc---
Confidence 35778888876422 223333343321 11233 122221 11110
Q ss_pred ceeecCCCCCcceeecCHHHHHHHHHCCCCCCCC--ccchHHHHHHHHH
Q 012433 402 KMAFFDPSRAKDFLFISGTKMRTLARSKENPPDG--FMCPGGWKVLVEY 448 (464)
Q Consensus 402 ~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~--f~rPeV~~iL~~~ 448 (464)
.+ .+-.||||.||+++.+|.....| +..|.|++.|.++
T Consensus 132 -----~~----~~~~~s~T~iR~~~~~~~~~~~~~~~vP~~v~~~l~~~ 171 (340)
T PRK05379 132 -----VP----NTEDLSATEIRDAYFEGRISSFYGWAVPAPVYAFLEAF 171 (340)
T ss_pred -----CC----cccccCccHHHHHHHcCCCchhhhhcCCHHHHHHHHHh
Confidence 12 34469999999999999986655 8999999998877
No 21
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=97.73 E-value=0.00071 Score=63.66 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=94.1
Q ss_pred eEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 012433 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG-YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIF 322 (464)
Q Consensus 245 ~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG-~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~l 322 (464)
+|.-|- |-||+|.||..+.+. + . + -+-+++.|-.. ..|..-++.+.|++-.+.++++ +....+.++.+
T Consensus 3 ~i~ifGGSFDP~H~GHl~ia~~----~-~-~--~d~v~~vP~~~~~~~k~~~~~~~R~~M~~~ai~~--~~~~~~~v~~~ 72 (174)
T PRK08887 3 KIAVFGSAFNPPSLGHKSVIES----L-S-H--FDLVLLVPSIAHAWGKTMLDYETRCQLVDAFIQD--LGLSNVQRSDI 72 (174)
T ss_pred eEEEeCCCCCCCCHHHHHHHHH----h-h-c--CCEEEEEECCCCcccCCCCCHHHHHHHHHHHHhc--cCCCceEEehH
Confidence 454555 899999999999653 2 2 2 25577777662 3334778999999999998883 22123444433
Q ss_pred CCCccc---CChhH--HHHHHHHHHHcC-Cc-eeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEE
Q 012433 323 PSPMHY---AGPTE--VQWHAKARINAG-AN-FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAA 395 (464)
Q Consensus 323 p~~Mry---AGPRE--AllHAiiRkNyG-cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~ 395 (464)
. .+- .||.= ..+-.+ ++.|. +. .||+|-|-.- +|-.=+++++|++.. .++.
T Consensus 73 E--~~~~~~~~~~yT~~tl~~l-~~~~p~~~~~~iiG~D~l~--------~l~~W~~~~~i~~~~------~l~~----- 130 (174)
T PRK08887 73 E--QELYAPDESVTTYALLTRL-QELYPEADLTFVIGPDNFL--------KFAKFYKADEITQRW------TVMA----- 130 (174)
T ss_pred H--hhhccCCCCcchHHHHHHH-HHHCCCCeEEEEEccchHH--------HHHHhCCHHHHHhhC------eEEE-----
Confidence 3 332 33321 122223 33343 22 2788988553 222122345565432 1121
Q ss_pred EecCCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 396 YDKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 396 Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
+|. .+.||.|.||++++.|..+. .+..++|.+-|.+.
T Consensus 131 -----------~~~----~~~ISST~IR~~l~~g~~i~-~lvp~~V~~yI~~~ 167 (174)
T PRK08887 131 -----------CPE----KVPIRSTDIRNALQNGKDIS-HLTTPGVARLLKEH 167 (174)
T ss_pred -----------eCC----CCCcCHHHHHHHHHcCCChh-HhCCHHHHHHHHHc
Confidence 111 35699999999999998766 78999999988763
No 22
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=97.70 E-value=0.0019 Score=60.11 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=89.9
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEec-ccCC--CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP-LGGY--TKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~P-lvG~--tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~Mr 327 (464)
+-||+|.||..+++. |++. ++-|+|.. --.. ++..-++.+.|++-.+..+.+.-++.+++.+..++..
T Consensus 7 ~FdP~H~GHl~~i~~----a~~~---~d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~-- 77 (163)
T cd02166 7 RFQPFHLGHLKVIKW----ILEE---VDELIIGIGSAQESHTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDI-- 77 (163)
T ss_pred ccCCCCHHHHHHHHH----HHHH---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCC--
Confidence 568999999999874 4555 25555432 2111 2334478899999999887743356677777655433
Q ss_pred cCChhHHHHHHHHHHHcC-CceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecCCCceeec
Q 012433 328 YAGPTEVQWHAKARINAG-ANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFF 406 (464)
Q Consensus 328 yAGPREAllHAiiRkNyG-cTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~ 406 (464)
+ ....|-+-++.... ++.+++|+ +||. ++ ++.. |+.++.++
T Consensus 78 ~---~~~~w~~~v~~~vp~~div~~g~------------~~~~-----~~---f~~~-g~~v~~~p-------------- 119 (163)
T cd02166 78 E---RNSLWVSYVESLTPPFDVVYSGN------------PLVA-----RL---FKEA-GYEVRRPP-------------- 119 (163)
T ss_pred C---chHHHHHHHHHHCCCCCEEEECc------------hHHH-----Hh---hhhc-CCeEecCC--------------
Confidence 2 34678888876555 44444453 2332 22 3322 44443331
Q ss_pred CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 407 DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 407 ~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
.. ++-.||+|+||+++.+|+..-. +..|+|++.|.++
T Consensus 120 --~~--~~~~~s~t~iR~~~~~~~~~~~-~vp~~v~~~l~~~ 156 (163)
T cd02166 120 --MF--NREEYSGTEIRRLMLGGEDWEE-LVPKSVAEVIKEI 156 (163)
T ss_pred --cc--cCCCCCHHHHHHHHHcCCchhh-cCCHHHHHHHHHc
Confidence 10 1235899999999988766543 3789999888765
No 23
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=97.65 E-value=0.00075 Score=66.37 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=105.0
Q ss_pred eEEEee--cCCCCchhhHHHHHHHHHHHHHhcCCCCc-----EEEecc-cCCCCCCCCChHHHHHHHHHHHHcCCCCCCc
Q 012433 245 AVFAFQ--LRNPVHNGHALLMTDTRRRLLEMGYQNPI-----LLLHPL-GGYTKADDVPLSWRMKQHEKVLEDGVLDPET 316 (464)
Q Consensus 245 ~VvafQ--TRNPlHRaHe~l~k~~~~~ale~g~~~~~-----Lll~Pl-vG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~ 316 (464)
+||++. |-||+|.||..+.+.|++ +++. +. +++.|. ....|++-++.+.|++-.+..+++ .|.
T Consensus 22 ~~v~i~GGSFdP~H~gHl~ia~~a~~-~l~~----d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~--~~~-- 92 (236)
T PLN02945 22 RVVLVATGSFNPPTYMHLRMFELARD-ALMS----EGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACED--SDF-- 92 (236)
T ss_pred eEEEEEcCCCCCCcHHHHHHHHHHHH-HHhh----cCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC--CCC--
Confidence 577777 899999999999876543 4444 33 245564 233566789999999998877773 232
Q ss_pred eEEEecCCCcccCChhHHHHH-HHHHHHcC---------Cc-eeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCc
Q 012433 317 TVVSIFPSPMHYAGPTEVQWH-AKARINAG---------AN-FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLER 385 (464)
Q Consensus 317 ~~l~~lp~~MryAGPREAllH-AiiRkNyG---------cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~ 385 (464)
+.+-++..+-.|+.-.+-. ..+++-|+ +. .||+|-|.--=- .....|...+-++|++...
T Consensus 93 --~~V~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l---~~~~~W~~~~~~~l~~~~~---- 163 (236)
T PLN02945 93 --IMVDPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDLLESF---STPGVWIPDQVRTICRDYG---- 163 (236)
T ss_pred --eEecHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhHHHhc---CCCCcCCHHHHHHHHHhCC----
Confidence 4555666666777543322 23566563 22 488898853210 0001243334455886542
Q ss_pred ceeeEeceEEEec------------CCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHH
Q 012433 386 LNILPFKVAAYDK------------TQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447 (464)
Q Consensus 386 i~i~~f~~~~Yc~------------~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~ 447 (464)
++.+.---|.. .++.+....+. ....||.|.||+.+++|..+. .+..++|.+-|.+
T Consensus 164 --~vV~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~---~~~~ISST~IR~~l~~g~~i~-~lvP~~V~~YI~~ 231 (236)
T PLN02945 164 --VVCIRREGQDVEKLVSQDEILNENRGNILVVDDL---VPNSISSTRVRECISRGLSVK-YLTPDGVIDYIKE 231 (236)
T ss_pred --EEEEeCCCCCHHHHhhcchhhhhCcCCEEEeccc---ccccccHHHHHHHHHcCCCch-hhCCHHHHHHHHH
Confidence 12211111110 00111111111 124699999999999998654 7899999998875
No 24
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.58 E-value=0.002 Score=60.84 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=89.0
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccC---CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG---YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG---~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~Mr 327 (464)
+-||+|.||..+++. |++. ++-|+|.+-.. .++...++.+.|++-.+..+.+.-.+.+++.+..++..
T Consensus 8 ~F~P~H~GHl~~i~~----a~~~---~d~v~v~i~s~~~~~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D~-- 78 (174)
T PRK01153 8 RFQPFHKGHLEVIKW----ILEE---VDELIIGIGSAQESHTLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPDI-- 78 (174)
T ss_pred ccCCCCHHHHHHHHH----HHHh---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCCc--
Confidence 567999999999874 4443 35566643222 23456789999999999888643345556555544432
Q ss_pred cCChhHHHHHHHHHHHcCCce-eeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecCCCceeec
Q 012433 328 YAGPTEVQWHAKARINAGANF-YIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFF 406 (464)
Q Consensus 328 yAGPREAllHAiiRkNyGcTH-fIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~ 406 (464)
..+..|-+-+++--..-. .+.| + .|| ...|++ .|+.++..+.
T Consensus 79 ---~~~~~w~~~v~~~~~~~d~v~~~-~-----------~y~--------~~~f~~-~g~~v~~~p~------------- 121 (174)
T PRK01153 79 ---EFNSIWVSHVESYTPPFDVVYTG-N-----------PLV--------ARLFRE-AGYEVRQPPM------------- 121 (174)
T ss_pred ---chHHHHHHHHHHhCCCCCEEEEC-C-----------hHH--------HHhchh-hCCeEecCCc-------------
Confidence 257788888865544221 2222 1 222 223333 2454443220
Q ss_pred CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 407 DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 407 ~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
. ++-.||||.||+++.+|..-.. +..|+|++.|.++
T Consensus 122 ~-----~~~~iSsT~IR~~i~~g~~w~~-~VPp~V~~~i~~~ 157 (174)
T PRK01153 122 F-----NREEYSGTEIRRRMIEGDPWEE-LVPKSVAEVIKEI 157 (174)
T ss_pred c-----ccCCCCHHHHHHHHHcCCchhh-hCCHHHHHHHHHh
Confidence 0 1336999999999999984322 4788999988776
No 25
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=97.56 E-value=0.0018 Score=60.91 Aligned_cols=148 Identities=20% Similarity=0.162 Sum_probs=83.5
Q ss_pred EEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEe--ccc----CCCC--CCCCChHHHHHHHHHHHHcCCCCCCce
Q 012433 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH--PLG----GYTK--ADDVPLSWRMKQHEKVLEDGVLDPETT 317 (464)
Q Consensus 246 VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~--Plv----G~tK--~~Di~~~~Rvr~ye~ll~~~y~p~~~~ 317 (464)
|+++=+-+++|+||..|++.|.+.|-+.++. .+++. |-- ...+ .--.+.+.|++-.+.+ -=+.
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~--~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l------~vd~- 72 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLP--SAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL------GVDY- 72 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCC--eEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc------CCCE-
Confidence 6777789999999999998776666544322 23332 211 1112 2246778888866542 1223
Q ss_pred EEEecCCCcccC--ChhHHHHHHHHHHHcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceE
Q 012433 318 VVSIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVA 394 (464)
Q Consensus 318 ~l~~lp~~MryA--GPREAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~ 394 (464)
+-++|....++ -| |....-++- +.++.+++||.|+. |-. .-.+...-++++. ..+++++..+..
T Consensus 73 -v~~~~f~~~~~~~s~-~~Fi~~il~-~~~~~~ivvG~Df~FG~~------~~g~~~~L~~~~~----~~g~~v~~v~~~ 139 (180)
T cd02064 73 -LLVLPFDKEFASLSA-EEFVEDLLV-KLNAKHVVVGFDFRFGKG------RSGDAELLKELGK----KYGFEVTVVPPV 139 (180)
T ss_pred -EEEeCCCHHHHcCCH-HHHHHHHHh-hcCCeEEEEccCCCCCCC------CCCCHHHHHHhhh----hcCcEEEEeCcE
Confidence 33345544333 34 444455554 34999999999986 322 1112222223332 224555544321
Q ss_pred EEecCCCceeecCCCCCcceeecCHHHHHHHHHCCCC
Q 012433 395 AYDKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKEN 431 (464)
Q Consensus 395 ~Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~ 431 (464)
-| +...||.|.||++|++|..
T Consensus 140 ~~----------------~~~~iSST~IR~~i~~G~i 160 (180)
T cd02064 140 TL----------------DGERVSSTRIREALAEGDV 160 (180)
T ss_pred ec----------------CCcEEcHHHHHHHHHhCCH
Confidence 11 1136999999999999973
No 26
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=97.40 E-value=0.0055 Score=58.60 Aligned_cols=174 Identities=18% Similarity=0.212 Sum_probs=100.2
Q ss_pred eEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccC-CCCC--CCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 012433 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG-YTKA--DDVPLSWRMKQHEKVLEDGVLDPETTVVS 320 (464)
Q Consensus 245 ~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG-~tK~--~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~ 320 (464)
+|.-|- +-||+|.||..|.+.|++ ..+ -+-+++.|--. ..|. .-++.+.|++-.+.++++ .| .+.++
T Consensus 5 ~i~i~gGsFdP~H~GH~~l~~~a~~---~~~--~d~v~~~p~~~~~~k~~~~~~~~~~R~~m~~~a~~~--~~--~~~v~ 75 (203)
T PRK00071 5 RIGLFGGTFDPPHYGHLAIAEEAAE---RLG--LDEVWFLPNPGPPHKPQKPLAPLEHRLAMLELAIAD--NP--RFSVS 75 (203)
T ss_pred EEEEEeeCCCccCHHHHHHHHHHHH---HcC--CCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHhcC--CC--ceEEe
Confidence 455555 899999999999875432 122 13355555422 2232 578999999999988883 33 23343
Q ss_pred ecCCCcccCChhHHHH-HHHHHHHcCCc--eeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEe
Q 012433 321 IFPSPMHYAGPTEVQW-HAKARINAGAN--FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYD 397 (464)
Q Consensus 321 ~lp~~MryAGPREAll-HAiiRkNyGcT--HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc 397 (464)
+....-.||.=.+- =..+++.|.-+ .||+|-|--- .|-.-++.++|++... ++.+..-.|.
T Consensus 76 --~~E~~~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~--------~l~~W~~~~~i~~~~~------~iv~~R~g~~ 139 (203)
T PRK00071 76 --DIELERPGPSYTIDTLRELRARYPDVELVFIIGADALA--------QLPRWKRWEEILDLVH------FVVVPRPGYP 139 (203)
T ss_pred --HHHHhCCCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhh--------hcccccCHHHHHHhCc------EEEEeCCCCC
Confidence 33333334432221 11234556433 5899999442 3333446788887542 2222111111
Q ss_pred cC-------------CCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 398 KT-------------QGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 398 ~~-------------c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
.. ++.+... + .....||.|+||+.+++|.. ...+..|+|.+-|.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~-~---~~~~~ISST~IR~~l~~g~~-~~~lvp~~V~~YI~~~ 198 (203)
T PRK00071 140 LEALALPALQQLLEAAGAITLL-D---VPLLAISSTAIRERIKEGRP-IRYLLPEAVLDYIEKH 198 (203)
T ss_pred ccccchhHHHHhhccCCCEEEE-e---CCCCccCHHHHHHHHHcCCC-hhHhCCHHHHHHHHHh
Confidence 00 1111111 1 11257999999999999986 4678999999988763
No 27
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=97.40 E-value=0.0068 Score=60.22 Aligned_cols=180 Identities=21% Similarity=0.238 Sum_probs=105.9
Q ss_pred eEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEeccc-CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 012433 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLG-GYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIF 322 (464)
Q Consensus 245 ~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~Plv-G~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~l 322 (464)
+|.=|- |-||+|.||..+.+.+ ++. +.-+-+++.|.. .+.|....+.+.|++-.+..+++.-.+... +.+-
T Consensus 23 ~IgifGGSFdPiH~GHl~ia~~~----~~~-l~ld~v~~iP~~~pp~K~~~~~~~~Rl~M~~lAi~~~~~~~~~--~~v~ 95 (243)
T PRK06973 23 RIGILGGTFDPIHDGHLALARRF----ADV-LDLTELVLIPAGQPWQKADVSAAEHRLAMTRAAAASLVLPGVT--VRVA 95 (243)
T ss_pred eEEEECCCCCCCcHHHHHHHHHH----HHH-cCCCEEEEEECCcCCCCCCCCCHHHHHHHHHHHHHhccCCCce--EEEe
Confidence 455555 9999999999997643 332 112457777764 344656789999999999888731112223 4444
Q ss_pred CCCcccCChhHHHH-HHHHHHHcC--Cc-eeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEe-
Q 012433 323 PSPMHYAGPTEVQW-HAKARINAG--AN-FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYD- 397 (464)
Q Consensus 323 p~~MryAGPREAll-HAiiRkNyG--cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc- 397 (464)
.....-.||.=.+- =..+++.|| +. .||+|-|..-- |=.=++.++|++... + +.+.---|.
T Consensus 96 ~~Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~--------l~~W~~~~~L~~~~~----l--vV~~R~g~~~ 161 (243)
T PRK06973 96 TDEIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVR--------LDTWRDWRRLFDYAH----L--CAATRPGFDL 161 (243)
T ss_pred HhhhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhh--------cCCcccHHHHHHhCC----E--EEEECCCCCc
Confidence 55555577765441 134566683 43 68999996642 222345688887542 1 111111110
Q ss_pred c---------------C-------CCceeecCCCCCcceeecCHHHHHHHHHCCC-------CCCCCccchHHHHHHHHH
Q 012433 398 K---------------T-------QGKMAFFDPSRAKDFLFISGTKMRTLARSKE-------NPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 398 ~---------------~-------c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~-------~pP~~f~rPeV~~iL~~~ 448 (464)
. . .......++ ...+.||.|.||+.|++|. .....+..++|.+-|.+.
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~l~~~~~g~~~~~~---~~~~~ISST~IR~~l~~g~~~~~~~~~~i~~lvP~~V~~YI~~~ 238 (243)
T PRK06973 162 GAASPAVAAEIAARQADADVLQATPAGHLLIDT---TLAFDLSATDIRAHLRACIARRAQVPDASAEHVPAAVWAYILQH 238 (243)
T ss_pred ccchhHHHHHHhhhhhhhhhhhcCCCceEEEcC---CCcccccHHHHHHHHHcCCCcccccCCChhHhCCHHHHHHHHHc
Confidence 0 0 000111111 1234699999999999992 345678889999988764
No 28
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=97.38 E-value=0.0034 Score=59.61 Aligned_cols=167 Identities=17% Similarity=0.197 Sum_probs=99.1
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCC-CC--CCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-KA--DDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~t-K~--~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~Mr 327 (464)
|-||+|.||..+.+.| ++.. ..+.+++.|..... |. .-++.+.|++-.+.++++ .| ...+ -....+
T Consensus 5 sFdP~H~GHl~l~~~a----~~~~-~~d~v~~~p~~~~p~k~~~~~~~~~~R~~m~~~a~~~--~~--~~~v--~~~E~~ 73 (193)
T TIGR00482 5 SFDPIHYGHLLLAEEA----LDHL-DLDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAIED--NP--KFEV--DDFEIK 73 (193)
T ss_pred cCCccCHHHHHHHHHH----HHHc-CCCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhc--CC--CEEE--eHHHHh
Confidence 6799999999998643 3331 12457777755442 32 448999999999988883 23 3333 345555
Q ss_pred cCCh--hHHHHHHHHHHHcC-Cc-eeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecC----
Q 012433 328 YAGP--TEVQWHAKARINAG-AN-FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKT---- 399 (464)
Q Consensus 328 yAGP--REAllHAiiRkNyG-cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~---- 399 (464)
-.|| .=-.+ .-+|+.|. +. .||+|-|-.-=-+ .+| +.++|++... ++.+.---|...
T Consensus 74 ~~~~syT~~tl-~~l~~~~p~~~~~~iiG~D~l~~l~-----~W~---~~~~i~~~~~------~iv~~R~g~~~~~~~~ 138 (193)
T TIGR00482 74 RGGPSYTIDTL-KHLKKKYPDVELYFIIGADALRSFP-----LWK---DWQELLELVH------LVIVPRPGYTLDKALL 138 (193)
T ss_pred CCCCCCHHHHH-HHHHHHCCCCeEEEEEcHHHhhhhc-----ccc---CHHHHHHhCc------EEEEeCCCCCcchhhh
Confidence 5666 22233 33455564 33 5899999764221 333 6678887542 122111111100
Q ss_pred --------CCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 400 --------QGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 400 --------c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
.+.+... + .....||+|+||+++++|+.+. .+..|+|.+-|.+.
T Consensus 139 ~~~~~~~~~~~i~~~-~---~~~~~iSST~IR~~l~~g~~~~-~lvP~~V~~YI~~~ 190 (193)
T TIGR00482 139 EKAILRMHHGNLTLL-H---NPRVPISSTEIRQRIRQGKSIE-YLLPDPVIKYIKQH 190 (193)
T ss_pred HHHHhcccCCcEEEE-c---CCccccCHHHHHHHHHcCCCch-hhCCHHHHHHHHHh
Confidence 0011111 1 1125799999999999998754 68899999988763
No 29
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=97.22 E-value=0.0034 Score=63.85 Aligned_cols=161 Identities=18% Similarity=0.151 Sum_probs=91.1
Q ss_pred EEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEE----ecc--cCC-CCCCCCChHHHHHHHHHHHHcCCCCCCceEE
Q 012433 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL----HPL--GGY-TKADDVPLSWRMKQHEKVLEDGVLDPETTVV 319 (464)
Q Consensus 247 vafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll----~Pl--vG~-tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l 319 (464)
+++=.-+-+|+||..|++.+.+.|.+.+.+ ..++ ||. ..+ ..+--.+.+.|.+-.+.+ -=+.+
T Consensus 2 vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~--~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~------Gvd~~-- 71 (288)
T TIGR00083 2 LAIGYFDGLHLGHQALLQELKQIAEEKGLP--PAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK------GVEQL-- 71 (288)
T ss_pred EEEEeCCccCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc------CCCEE--
Confidence 445566889999999999888777776533 2333 332 221 112244556676644432 22333
Q ss_pred EecCCCcccC--ChhHHHHHHHHHHHcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEE
Q 012433 320 SIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAY 396 (464)
Q Consensus 320 ~~lp~~MryA--GPREAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y 396 (464)
-++|....+| -| |.-..-++.+.+++.+++||-|+. |-+ .= .+++ .+..+....++.+...+
T Consensus 72 ~~~~F~~~~a~ls~-e~Fi~~~l~~~l~~~~ivvG~Df~FG~~------~~---G~~~-~L~~~~~~~g~~v~~~~---- 136 (288)
T TIGR00083 72 LVVVFDEEFANLSA-LQFIDQLIVKHLHVKFLVVGDDFRFGHD------RQ---GDFL-LLQLFGNTTIFCVIVKQ---- 136 (288)
T ss_pred EEeCCCHHHHcCCH-HHHHHHHHHhccCCcEEEECCCccCCCC------CC---CCHH-HHHHhccccCcEEEEec----
Confidence 3455543333 44 445566777889999999999986 432 11 1121 22222122233332221
Q ss_pred ecCCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhhcc
Q 012433 397 DKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYDSL 452 (464)
Q Consensus 397 c~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~~~ 452 (464)
+. ..+ ..||.|.||++|++|.. .++.+.|-+.|.--
T Consensus 137 -----------~~-~~~-~~ISST~IR~~l~~G~i-------~~A~~lLGr~y~i~ 172 (288)
T TIGR00083 137 -----------LF-CQD-IRISSSAIRQALKNGDL-------ELANKLLGRPYFIC 172 (288)
T ss_pred -----------cc-cCC-CeECHHHHHHHHHcCCH-------HHHHHhhhhhhccc
Confidence 11 113 57999999999999974 45555555655543
No 30
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.09 E-value=0.0058 Score=59.03 Aligned_cols=148 Identities=13% Similarity=0.065 Sum_probs=87.5
Q ss_pred CCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCC-----CCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 012433 253 NPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-----KADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (464)
Q Consensus 253 NPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~t-----K~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~Mr 327 (464)
+|+|.||.++++. |++. ++-|+|- +|.. ..+=+.+.-|+.-....+.+. ...++.+..++ =.
T Consensus 14 QPfH~GHl~~I~~----al~~---~devII~--IGSA~~s~t~~NPFTa~ER~~MI~~aL~e~--~~~rv~~ipi~--D~ 80 (196)
T PRK13793 14 QPFHLAHMQTIEI----ALQQ---SRYVILA--LGSAQMERNIKNPFLAIEREQMILSNFSLD--EQKRIRFVHVV--DV 80 (196)
T ss_pred CCCcHHHHHHHHH----HHHh---CCEEEEE--EccCCCCCCCCCCCCHHHHHHHHHHhcchh--hcceEEEEecC--Cc
Confidence 4999999999874 5565 3444442 4543 344477788888777666421 23355555454 22
Q ss_pred cCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecCCCceeecC
Q 012433 328 YAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFD 407 (464)
Q Consensus 328 yAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~~ 407 (464)
.++++|-+-+++--- -++..+. -|+ ++..+.++.++.+..|+++-+... .
T Consensus 81 ---~~~~~Wv~~V~~~v~---~v~~~n~-~V~----------------~~g~~k~e~s~~l~~fpew~~v~~-------~ 130 (196)
T PRK13793 81 ---YNDEKWVKQVKSLVN---GVIEPNS-KVG----------------LIGHFKDESSYYLRLFPEWVMVEL-------D 130 (196)
T ss_pred ---cchhHHHHHHHHhch---hhccCCC-cce----------------eecccccCceEEEEeCCCCceeec-------c
Confidence 478999999987652 1111111 011 111121233455556665555222 2
Q ss_pred CCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 408 PSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 408 ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
+. +-.||||+||+++.+|.. =+....|.|+++|.++
T Consensus 131 ~~----r~~~SaT~IR~~~~~g~~-w~~lVP~~V~~~l~~~ 166 (196)
T PRK13793 131 SL----KDSISATPMREAYYQGKI-KTDAFPKGTIQFLEEF 166 (196)
T ss_pred cc----cCccchHHHHHHHHcCCC-hhhhCCHHHHHHHHHh
Confidence 21 446899999999999886 2234899999998876
No 31
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=97.02 E-value=0.023 Score=55.74 Aligned_cols=182 Identities=15% Similarity=0.067 Sum_probs=99.3
Q ss_pred EEEee-cCCCCchhhHHHHHHHHHHHHHhc--CCCCcEEEecccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEe
Q 012433 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMG--YQNPILLLHPLGG-YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSI 321 (464)
Q Consensus 246 VvafQ-TRNPlHRaHe~l~k~~~~~ale~g--~~~~~Lll~PlvG-~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~ 321 (464)
|+-|. |-||+|.||..+.+.+.+. ++.- +.....++.|.-- +.|..-.+.+.|++-.+..+++ .| ...++
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~-l~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~--~~--~~~v~- 75 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDH-LHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQS--SD--WIRVD- 75 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHH-HHhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHcc--CC--CEEEE-
Confidence 45566 8999999999998755432 2220 0001123456422 4567788999999999988873 33 33444
Q ss_pred cCCCcccCChhHHH--HHHHHHHHc--------------------CCc-eeeecCCCCCCCCCCCCCCCCCCchhhHHhh
Q 012433 322 FPSPMHYAGPTEVQ--WHAKARINA--------------------GAN-FYIVGRDPAGMGHPVEKRDLYDADHGKKVLS 378 (464)
Q Consensus 322 lp~~MryAGPREAl--lHAiiRkNy--------------------GcT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~ 378 (464)
++...-.||.-.+ +-.+ ++-| ++. .||+|-|..-=- .....|.....++|+.
T Consensus 76 -~~E~~~~~~syT~~TL~~l-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~fiiG~D~l~~l---~~~~~W~~~~~e~ll~ 150 (225)
T cd09286 76 -DWESLQPEWMRTAKVLRHH-REEINNKYGGIEGAAKRVLDGSRREVKIMLLCGADLLESF---GIPGLWKDADLEEILG 150 (225)
T ss_pred -ehhccCCccccHHHHHHHH-HHHhcccccccccccccccccccCCceEEEEecHhHHHhc---CCCCcCCHHHHHHHHH
Confidence 4555556653322 2222 3323 244 488899965311 0001243334778887
Q ss_pred hCCCCCcceeeEeceEEEec------------CCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHH
Q 012433 379 MAPGLERLNILPFKVAAYDK------------TQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLV 446 (464)
Q Consensus 379 ~~~~~~~i~i~~f~~~~Yc~------------~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~ 446 (464)
.+. +-+++ --.|.. ..+.+. .... .-...||.|.||+.+++|+. ...++.++|.+.|.
T Consensus 151 ~~~----~vv~~--R~g~~~~~~~~~~~~l~~~~~~i~-~~~~--~~~~~ISST~IR~~l~~g~~-~~~llp~~V~~YI~ 220 (225)
T cd09286 151 EFG----LVVVE--RTGSDPENFIASSDILRKYQDNIH-LVKD--WIPNDISSTKVRRALRRGMS-VKYLLPDPVIEYIE 220 (225)
T ss_pred hCC----EEEEe--CCCCCHHHhhhccchhHHhhCCEE-EEec--CcccccChHHHHHHHHcCCC-chhcCCHHHHHHHH
Confidence 542 22221 111110 001111 0111 01126999999999999975 44788999999887
Q ss_pred HH
Q 012433 447 EY 448 (464)
Q Consensus 447 ~~ 448 (464)
+.
T Consensus 221 ~~ 222 (225)
T cd09286 221 QH 222 (225)
T ss_pred Hc
Confidence 63
No 32
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=96.63 E-value=0.03 Score=57.85 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=94.2
Q ss_pred EEEee-cCCCCchhhHHHHHHHHHHHHH-hcCCCCcEEEeccc-CCCCC-CCCCh-HHHHHHHHHHHHcCCCCCCceEEE
Q 012433 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLE-MGYQNPILLLHPLG-GYTKA-DDVPL-SWRMKQHEKVLEDGVLDPETTVVS 320 (464)
Q Consensus 246 VvafQ-TRNPlHRaHe~l~k~~~~~ale-~g~~~~~Lll~Plv-G~tK~-~Di~~-~~Rvr~ye~ll~~~y~p~~~~~l~ 320 (464)
|.-|- |-||+|.||..|.+.+ ++ .+ .+-+++.|-. .+.|. ...+. +.|++-.+.++++ .| .+.++
T Consensus 3 i~i~gGsFdP~H~GHl~la~~a----~~~~~--~d~v~~~p~~~~p~K~~~~~~~~~~R~~m~~~a~~~--~~--~~~v~ 72 (342)
T PRK07152 3 IAIFGGSFDPIHKGHINIAKKA----IKKLK--LDKLFFVPTYINPFKKKQKASNGEHRLNMLKLALKN--LP--KMEVS 72 (342)
T ss_pred EEEEeeCCCCcCHHHHHHHHHH----HHHhC--CCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhh--CC--CeEEe
Confidence 33444 8999999999997643 33 22 2456666643 33343 34555 8899999888883 24 33333
Q ss_pred ecCCCcccCChhHH-HHHHHHHHHcCCc--eeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEe
Q 012433 321 IFPSPMHYAGPTEV-QWHAKARINAGAN--FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYD 397 (464)
Q Consensus 321 ~lp~~MryAGPREA-llHAiiRkNyGcT--HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc 397 (464)
+...+-.||.=. ---..+++.|.=+ .||+|-|-.. .|-.-.+.++|++... ++.++---|.
T Consensus 73 --~~E~~~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~--------~l~~W~~~~~l~~~~~------~iv~~R~g~~ 136 (342)
T PRK07152 73 --DFEIKRQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLE--------KFKKWKNIEEILKKVQ------IVVFKRKKNI 136 (342)
T ss_pred --HHHHhCCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhh--------hcccccCHHHHHHhCC------EEEEECCCCC
Confidence 333344555311 1223445567433 6799999654 2223345678876542 2222111111
Q ss_pred cCC----CceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 398 KTQ----GKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 398 ~~c----~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
..- ..+... + .....||+|+||+.+++|. ..|+|++.|.+.
T Consensus 137 ~~~~~~~~~i~~~-~---~~~~~iSST~IR~~~~~~~------vP~~V~~YI~~~ 181 (342)
T PRK07152 137 NKKNLKKYNVLLL-K---NKNLNISSTKIRKGNLLGK------LDPKVNDYINEN 181 (342)
T ss_pred cccccccCcEEEe-c---CCccccCHHHHHHHHHcCC------CCHHHHHHHHHc
Confidence 100 011111 1 1235799999999999998 557888888764
No 33
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=96.48 E-value=0.028 Score=58.32 Aligned_cols=171 Identities=17% Similarity=0.122 Sum_probs=100.8
Q ss_pred CeEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEE--
Q 012433 244 DAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVS-- 320 (464)
Q Consensus 244 ~~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~-- 320 (464)
++|.+|- +-||+|.||.+|+++ |++. -+.++..++. .+..-++.+.|++-.+..+++ +|. -.++.
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~----A~~~----~d~~~v~v~~-~~~~~f~~~~R~~~v~~~~~~--~~n-v~v~~~~ 206 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQ----AARQ----CDWLHLFVVK-EDASLFSYDERFALVKQGIQD--LSN-VTVHNGS 206 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHH----HHHH----CCEEEEEEEe-CCCCCCCHHHHHHHHHHHhcC--CCC-EEEEecC
Confidence 4777777 999999999999874 4455 2455555555 445689999999999988883 343 22221
Q ss_pred -------ecCCCcccC-Ch---hH-----HHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhh-hCCCC
Q 012433 321 -------IFPSPMHYA-GP---TE-----VQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLS-MAPGL 383 (464)
Q Consensus 321 -------~lp~~MryA-GP---RE-----AllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~-~~~~~ 383 (464)
.||.--.=. +. -. .||--.|+..+|.||=-||-++--.= ...|.. .-++++. ..++
T Consensus 207 ~~~is~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~-----t~~yn~-~m~~~~~~~~~~- 279 (332)
T TIGR00124 207 AYIISRATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV-----TALYNQ-KMKYWLEEPNDA- 279 (332)
T ss_pred CceeccccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh-----HHHHHH-HHHHhhhccCCC-
Confidence 122211110 11 11 23334577789999999999865432 134422 1133333 2332
Q ss_pred CcceeeEeceEEEecCCCceeecCCCCCcceeecCHHHHHHHHHCCC-CCCCCccchHHHHHHHHHh
Q 012433 384 ERLNILPFKVAAYDKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKE-NPPDGFMCPGGWKVLVEYY 449 (464)
Q Consensus 384 ~~i~i~~f~~~~Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~-~pP~~f~rPeV~~iL~~~~ 449 (464)
.+|++++++..-. . -..+|+|.||++|++|. .-=..++.+...+.|.++.
T Consensus 280 ~~I~~~~I~R~~~------------~----~~~~SASaIR~~L~~~~~~~i~~~VP~~t~~~l~~~~ 330 (332)
T TIGR00124 280 PPIEVVEIQRKLA------------A----GGPISASTVRELLAKGDWAAWAKLVPETTLHFLQNLL 330 (332)
T ss_pred CCcEEEEEeeecC------------C----CCeeCHHHHHHHHHcCCHHHHHHhCCHHHHHHHHHhh
Confidence 3577777732111 1 12599999999999875 1111245566666665543
No 34
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=96.43 E-value=0.039 Score=50.66 Aligned_cols=131 Identities=19% Similarity=0.131 Sum_probs=80.9
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAG 330 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAG 330 (464)
|-||+|.||..+.++ |.+.. +-+++-|..-+.|..-++.+.|++-.+.++++ +|.-.+ +.. +.|
T Consensus 9 SFDPih~GHl~ii~~----A~~~~---D~v~v~v~~np~K~~~~s~e~R~~~l~~~~~~--~~~v~v-~~~------~~~ 72 (140)
T PRK13964 9 SFDPFHKGHLNILKK----ALKLF---DKVYVVVSINPDKSNASDLDSRFKNVKNKLKD--FKNVEV-LIN------ENK 72 (140)
T ss_pred eeCCCCHHHHHHHHH----HHHhC---CEEEEEeccCCCCCCCCCHHHHHHHHHHHHcC--CCCcEE-ecC------cCC
Confidence 889999999999875 44553 56777777777788889999999999988873 454222 111 111
Q ss_pred hhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCC-CcceeeEeceEEEecCCCceeecCCC
Q 012433 331 PTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGL-ERLNILPFKVAAYDKTQGKMAFFDPS 409 (464)
Q Consensus 331 PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~-~~i~i~~f~~~~Yc~~c~~~~~~~ph 409 (464)
. + .=+.|..||+-+|-|=.-. . ||= |+-| +..+-..+ .+|+.+++ +
T Consensus 73 ---l-~-v~~~~~~~a~~ivrGlR~~--~------Dfe--yE~~-~a~~n~~l~~~ietvfl----------------~- 119 (140)
T PRK13964 73 ---L-T-AEIAKKLGANFLIRSARNN--I------DFQ--YEIV-LAAGNKSLNNDLETILI----------------I- 119 (140)
T ss_pred ---c-H-HHHHHHCCCeEEEEecCCC--c------cHH--HHHH-HHHHHHhhcCCCeEEEe----------------e-
Confidence 1 1 2245777999777774421 1 221 2222 11111111 24666655 1
Q ss_pred CCcceeecCHHHHHHHHHCCC
Q 012433 410 RAKDFLFISGTKMRTLARSKE 430 (464)
Q Consensus 410 ~~~~~~~iSGT~vR~~L~~G~ 430 (464)
...+...||.|.||++.+-|+
T Consensus 120 ~~~~~~~iSSs~vre~~~~~~ 140 (140)
T PRK13964 120 PDYDKIEYSSTLLRHKKFLKK 140 (140)
T ss_pred cCCCCCEEeHHHHHHHHHccC
Confidence 123556899999999998774
No 35
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=96.42 E-value=0.023 Score=58.28 Aligned_cols=163 Identities=21% Similarity=0.184 Sum_probs=92.1
Q ss_pred eEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEE----ecc--cCCCC--CCCCChHHHHHHHHHHHHcCCCCCCc
Q 012433 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL----HPL--GGYTK--ADDVPLSWRMKQHEKVLEDGVLDPET 316 (464)
Q Consensus 245 ~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll----~Pl--vG~tK--~~Di~~~~Rvr~ye~ll~~~y~p~~~ 316 (464)
.|+++=+-+-+|+||..|++.|.+.|.+.+. ...++ ||- ....+ .--.+.+-|.+..+.+ + =+.
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~--~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~---g---VD~ 86 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGL--PSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL---G---VDY 86 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCC--CEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc---C---CCE
Confidence 6888889999999999999987666655431 22344 232 11111 1234667777755543 1 233
Q ss_pred eEEEecCCCcccCC-hhHHHHHHHHHHHcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceE
Q 012433 317 TVVSIFPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDPA-GMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVA 394 (464)
Q Consensus 317 ~~l~~lp~~MryAG-PREAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~ 394 (464)
+++ +|....++. +-|..++-++.+.+++.+++||.|+. |-+ .--+...-++..+.+ |++++..+..
T Consensus 87 ~~~--~~F~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~------~~G~~~~L~~~~~~~----g~~v~~v~~~ 154 (305)
T PRK05627 87 VLV--LPFDEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKK------RAGDFELLKEAGKEF----GFEVTIVPEV 154 (305)
T ss_pred EEE--ecCCHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCC------CCCCHHHHHHHHHHc----CcEEEEeccE
Confidence 333 454322221 23556677888999999999999985 322 111112222332222 3444333221
Q ss_pred EEecCCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhh
Q 012433 395 AYDKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYD 450 (464)
Q Consensus 395 ~Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~ 450 (464)
+. +-..+|.|.||++|++|.. .++.+.|-+.|.
T Consensus 155 --~~--------------~~~~ISST~IR~~I~~G~i-------~~A~~lLg~~y~ 187 (305)
T PRK05627 155 --KE--------------DGERVSSTAIRQALAEGDL-------ELANKLLGRPYS 187 (305)
T ss_pred --ec--------------CCCcCchHHHHHHHHcCCH-------HHHHhhhcCCCc
Confidence 10 1125999999999999974 344455545444
No 36
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=96.29 E-value=0.031 Score=54.00 Aligned_cols=171 Identities=17% Similarity=0.211 Sum_probs=100.1
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCC-C--CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-K--ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~t-K--~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~Mr 327 (464)
|-||+|.||..+.+.+++ ..+ -+-|+..|-.... | .+-.|.+.|++-.+.+++++ |. +.+-...+.
T Consensus 11 sFdP~H~GHl~ia~~~~~---~l~--ld~vi~~ps~~~p~k~~~~~a~~~~R~~Ml~la~~~~--~~----~~v~~~e~~ 79 (197)
T COG1057 11 SFDPPHYGHLLIAEEALD---QLG--LDKVIFLPSPVPPHKKKKELASAEHRLAMLELAIEDN--PR----FEVSDREIK 79 (197)
T ss_pred CCCCCCHHHHHHHHHHHH---hcC--CCeEEEecCCCCCCCCCccCCCHHHHHHHHHHHHhcC--CC----cceeHHHHH
Confidence 899999999999765432 232 1345555555433 3 45899999999999999842 33 333344455
Q ss_pred cCChh---HHHHHHHHHHHcCCc-eeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecCCCce
Q 012433 328 YAGPT---EVQWHAKARINAGAN-FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKM 403 (464)
Q Consensus 328 yAGPR---EAllHAiiRkNyGcT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~ 403 (464)
--|+. +.|-|..-+.|-.+. -||+|-|.-- .|-.=++.++|++... ++.++.-.|+..+..+
T Consensus 80 r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~--------~l~~W~~~~ell~~~~------~vv~~Rp~~~~~~~~~ 145 (197)
T COG1057 80 RGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLA--------SLPKWYDWDELLKLVT------FVVAPRPGYGELELSL 145 (197)
T ss_pred cCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhh--------hhhhhhhHHHHHHhCC------EEEEecCCchhhhhhh
Confidence 55654 566554444444442 3899999642 2223346677876542 2333333332111111
Q ss_pred eecCCC---CCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHH
Q 012433 404 AFFDPS---RAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447 (464)
Q Consensus 404 ~~~~ph---~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~ 447 (464)
.+.+.. -....+.||.|.||+.+++|+.+ ..+..++|.+-+.+
T Consensus 146 ~~~~~~~~~~~~~~~~ISSt~IR~~~~~~~~~-~~llP~~V~~YI~~ 191 (197)
T COG1057 146 LSSGGAIILLDLPRLDISSTEIRERIRRGASV-DYLLPDSVLSYIEE 191 (197)
T ss_pred hcCCceEEEccCccccCchHHHHHHHhCCCCc-hhcCCHHHHHHHHH
Confidence 100000 12234579999999999999754 45677788776654
No 37
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=96.18 E-value=0.11 Score=49.77 Aligned_cols=146 Identities=18% Similarity=0.180 Sum_probs=87.1
Q ss_pred ecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHc--C--CCCCCceEEE--ecC
Q 012433 250 QLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLED--G--VLDPETTVVS--IFP 323 (464)
Q Consensus 250 QTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~--~--y~p~~~~~l~--~lp 323 (464)
...||.+.||.||+..| ... .+.|..++|...+ ..||.+.|.+-.+.=..+ | +.|.+..++| .||
T Consensus 6 MNaNPFT~GH~yLiE~A----a~~----~d~l~vFVV~eD~-S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFP 76 (182)
T PF08218_consen 6 MNANPFTLGHRYLIEQA----AKE----CDWLHVFVVSEDR-SLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFP 76 (182)
T ss_pred EcCCCCccHHHHHHHHH----HHh----CCEEEEEEEcccc-CcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccCh
Confidence 47899999999998643 333 3588888888665 459999998855544431 0 1233333332 333
Q ss_pred CCcccCChhH---------HHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceE
Q 012433 324 SPMHYAGPTE---------VQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVA 394 (464)
Q Consensus 324 ~~MryAGPRE---------AllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~ 394 (464)
.--.-..-.. .||--.|++.+|.|+=-||-++-..=. ..|.. .-+++| |. .||+++.++..
T Consensus 77 sYFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT-----~~YN~-~M~~~L---p~-~gi~v~ei~R~ 146 (182)
T PF08218_consen 77 SYFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVT-----RIYNE-AMKEIL---PP-YGIEVVEIPRK 146 (182)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHH-----HHHHH-HHHHhc---cc-cCCEEEEEecc
Confidence 3222111111 234446888999999999998654321 22310 113333 33 35777666321
Q ss_pred EEecCCCceeecCCCCCcceeecCHHHHHHHHHCCC
Q 012433 395 AYDKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKE 430 (464)
Q Consensus 395 ~Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~ 430 (464)
.. .-.-||.+++|++|++|.
T Consensus 147 -------------~~---~g~~ISAS~VR~~l~~~~ 166 (182)
T PF08218_consen 147 -------------EI---NGEPISASRVRKLLKEGD 166 (182)
T ss_pred -------------cC---CCcEEcHHHHHHHHHcCC
Confidence 11 223699999999999994
No 38
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=95.97 E-value=0.099 Score=53.79 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=86.6
Q ss_pred CeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEE--ecccCCCCCC----CCChHHHHHHHHHHHHcCCCCCCce
Q 012433 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL--HPLGGYTKAD----DVPLSWRMKQHEKVLEDGVLDPETT 317 (464)
Q Consensus 244 ~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll--~PlvG~tK~~----Di~~~~Rvr~ye~ll~~~y~p~~~~ 317 (464)
..|++.=--+=+|+||..|++++.+.|.+.+.....+.. ||..=-.... -.+...|.+.. . -|.=+.+
T Consensus 16 ~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l----~--~~gvd~~ 89 (304)
T COG0196 16 GCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLL----A--GYGVDAL 89 (304)
T ss_pred CcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHH----H--hcCCcEE
Confidence 467777777889999999999888777777533222333 3322111111 23344454433 3 1333433
Q ss_pred EEEecCCCcccC--ChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEE
Q 012433 318 VVSIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAA 395 (464)
Q Consensus 318 ~l~~lp~~MryA--GPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~ 395 (464)
+ +++..-.+| .|. .-.+ ++-++..|.|+|||-|.- -|+ +-.+. -+.+..+... |++++..+.
T Consensus 90 ~--v~~F~~~fa~ls~~-~Fv~-~lv~~l~~k~ivvG~DF~-FGk-----~~~g~---~~~L~~~~~~-gf~v~~v~~-- 153 (304)
T COG0196 90 V--VLDFDLEFANLSAE-EFVE-LLVEKLNVKHIVVGFDFR-FGK-----GRQGN---AELLRELGQK-GFEVTIVPK-- 153 (304)
T ss_pred E--EEeCCHhHhhCCHH-HHHH-HHHhccCCcEEEEecccc-cCC-----CCCCC---HHHHHHhccC-CceEEEecc--
Confidence 3 344454444 554 4455 999999999999999953 221 11111 1233333223 555544311
Q ss_pred EecCCCceeecCCCCCcceeecCHHHHHHHHHCCCC
Q 012433 396 YDKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKEN 431 (464)
Q Consensus 396 Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~ 431 (464)
.|. +...||.|.||+.|++|..
T Consensus 154 ----------~~~----~~~~iSSt~IR~~L~~gdl 175 (304)
T COG0196 154 ----------INE----EGIRISSTAIRQALREGDL 175 (304)
T ss_pred ----------Eec----CCcEEchHHHHHHHhcCCH
Confidence 122 2267999999999999974
No 39
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=95.83 E-value=0.25 Score=46.31 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=99.8
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAG 330 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAG 330 (464)
|-+|++.||.-++++|. .+ -|-+.|--..-+.|..-++.+-|++-.+.... -+|.-++ .+ |.|
T Consensus 10 SFDPiTnGHlDii~RA~----~~---Fd~viVaV~~np~K~plFsleER~~l~~~~~~--~l~nV~V-~~-------f~~ 72 (159)
T COG0669 10 SFDPITNGHLDIIKRAS----AL---FDEVIVAVAINPSKKPLFSLEERVELIREATK--HLPNVEV-VG-------FSG 72 (159)
T ss_pred CCCCCccchHHHHHHHH----Hh---ccEEEEEEEeCCCcCCCcCHHHHHHHHHHHhc--CCCceEE-Ee-------ccc
Confidence 78999999999998653 33 24566666777789999999999999998887 4565433 22 222
Q ss_pred hhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHh-h-hCCCCCcceeeEeceEEEecCCCceeecCC
Q 012433 331 PTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVL-S-MAPGLERLNILPFKVAAYDKTQGKMAFFDP 408 (464)
Q Consensus 331 PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~-~-~~~~~~~i~i~~f~~~~Yc~~c~~~~~~~p 408 (464)
|=+=++|..||+.+|=|=--+. || .|+-|--. . ... ++|+.+.+
T Consensus 73 -----Llvd~ak~~~a~~ivRGLR~~s--------Df--eYE~qma~~N~~L~--~eveTvFl----------------- 118 (159)
T COG0669 73 -----LLVDYAKKLGATVLVRGLRAVS--------DF--EYELQMAHMNRKLA--PEVETVFL----------------- 118 (159)
T ss_pred -----HHHHHHHHcCCCEEEEeccccc--------hH--HHHHHHHHHHHhhc--ccccEEEe-----------------
Confidence 5566778899999987643221 22 13333211 1 111 13555554
Q ss_pred CCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 409 SRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 409 h~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
.....+.+||+|-+|+..+-|-.+- .|..|+|.+.|.+-
T Consensus 119 ~~s~~~~~iSSs~Vreia~~ggdvs-~~VP~~V~~~l~~k 157 (159)
T COG0669 119 MPSPEYSFISSSLVREIAAFGGDVS-EFVPEAVARALRAK 157 (159)
T ss_pred cCCcceehhhHHHHHHHHHhCCCch-hhCCHHHHHHHHHh
Confidence 1234667899999999999999875 58899999988764
No 40
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=95.54 E-value=0.2 Score=46.43 Aligned_cols=136 Identities=21% Similarity=0.225 Sum_probs=80.4
Q ss_pred eEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccC----CCC-CCCCChHHHHHHHHHHHHcCCCCCCceEE
Q 012433 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG----YTK-ADDVPLSWRMKQHEKVLEDGVLDPETTVV 319 (464)
Q Consensus 245 ~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG----~tK-~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l 319 (464)
+|+-.=|-||+|.||..+.+. |++.+ +-|+|-.--. ..| .--.+.+.|++..+.+++ +..|..++.+
T Consensus 3 ~v~~gGtFDplH~GH~~ll~~----A~~~~---d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~~~-~~~~~~~~~i 74 (153)
T PRK00777 3 KVAVGGTFDPLHDGHRALLRK----AFELG---KRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKFLK-AVEYDREYEI 74 (153)
T ss_pred EEEEecccCCCCHHHHHHHHH----HHHcC---CEEEEEEcCCccccccCCCCCCCHHHHHHHHHHHHH-hcCCCCcEEE
Confidence 344444899999999999874 45554 4455522222 223 346799999999999988 4666666555
Q ss_pred EecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecC
Q 012433 320 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKT 399 (464)
Q Consensus 320 ~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~ 399 (464)
..+.-. -||. +..+ .+-++||.|- +.+...-.++..+. |+..++|+.++..-|
T Consensus 75 ~~i~d~---~gp~-------~~~~--~d~ivvs~et-----------~~~~~~in~~r~~~-gl~~l~i~~v~~~~~--- 127 (153)
T PRK00777 75 VKIDDP---YGPA-------LEDD--FDAIVVSPET-----------YPGALKINEIRRER-GLKPLEIVVIDFVLA--- 127 (153)
T ss_pred Eecccc---CCCc-------cccC--CCEEEEChhh-----------hhhHHHHHHHHHHC-CCCceEEEEEeeeec---
Confidence 544322 3442 1122 5667888872 22333444555443 555666665543221
Q ss_pred CCceeecCCCCCcceeecCHHHHHHHHH
Q 012433 400 QGKMAFFDPSRAKDFLFISGTKMRTLAR 427 (464)
Q Consensus 400 c~~~~~~~ph~~~~~~~iSGT~vR~~L~ 427 (464)
++-..+|.|+||+.+.
T Consensus 128 ------------~~~~~~SSt~Ir~~~~ 143 (153)
T PRK00777 128 ------------EDGKPISSTRIRRGEI 143 (153)
T ss_pred ------------CCCCeeeHHHHHHhhh
Confidence 1124699999998654
No 41
>PRK07143 hypothetical protein; Provisional
Probab=94.94 E-value=0.16 Score=51.55 Aligned_cols=99 Identities=15% Similarity=0.207 Sum_probs=56.3
Q ss_pred CeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEE--ecccC-CCCCC-CCChHHHHHHHHHHHHcCCCCCCceEE
Q 012433 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL--HPLGG-YTKAD-DVPLSWRMKQHEKVLEDGVLDPETTVV 319 (464)
Q Consensus 244 ~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll--~PlvG-~tK~~-Di~~~~Rvr~ye~ll~~~y~p~~~~~l 319 (464)
..|+++=.-+-+|+||..|+++| .+.+.. ..++. ||..- ..++. -.+.+.|++..+. +--+.+++
T Consensus 16 ~~vvaiG~FDGvH~GHq~Ll~~a----~~~~~~-~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~------~Gvd~~~~ 84 (279)
T PRK07143 16 KPTFVLGGFESFHLGHLELFKKA----KESNDE-IVIVIFKNPENLPKNTNKKFSDLNSRLQTLAN------LGFKNIIL 84 (279)
T ss_pred CeEEEEccCCcCCHHHHHHHHHH----HHCCCc-EEEEEeCChHHhcccCcccCCCHHHHHHHHHH------CCCCEEEE
Confidence 46888889999999999999754 345311 11211 22210 01111 2344566664432 22244443
Q ss_pred EecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCC
Q 012433 320 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (464)
Q Consensus 320 ~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHA 356 (464)
-.|...+.--.|.|=+=+ ++ + +++.+++||.|+.
T Consensus 85 ~~F~~~~a~ls~e~Fi~~-ll-~-l~~~~iVvG~Df~ 118 (279)
T PRK07143 85 LDFNEELQNLSGNDFIEK-LT-K-NQVSFFVVGKDFR 118 (279)
T ss_pred eCCCHHHhCCCHHHHHHH-HH-h-cCCCEEEECCCcc
Confidence 334334555567554443 44 4 9999999999987
No 42
>PRK13670 hypothetical protein; Provisional
Probab=94.77 E-value=0.16 Score=53.87 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=58.4
Q ss_pred eEEEeec-CCCCchhhHHHHHHHHHHHHHhcCCCCcEEEeccc--CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEe
Q 012433 245 AVFAFQL-RNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLG--GYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSI 321 (464)
Q Consensus 245 ~VvafQT-RNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~Plv--G~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~ 321 (464)
+|+|.-+ -||+|+||.++++.+.+.+-+ + ..+.|-|-- ..-.+--++-+.|.+... +. --|. +-.
T Consensus 2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~-~---~~~~Vmp~~f~qrg~p~i~~~~~R~~~a~---~~---GvD~--vie 69 (388)
T PRK13670 2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNA-D---VTIAVMSGNFVQRGEPAIVDKWTRAKMAL---EN---GVDL--VVE 69 (388)
T ss_pred ceeEEEeeeCCcCHHHHHHHHHHHHHHhC-C---CcEEEecHHHhCCCCCCCCCHHHHHHHHH---Hc---CCCE--EEE
Confidence 4677774 799999999999876654433 2 223333422 111122567777776443 32 2343 334
Q ss_pred cCCCcccCChhHHHHHH--HHHHHcCCceeeecCCCCC
Q 012433 322 FPSPMHYAGPTEVQWHA--KARINAGANFYIVGRDPAG 357 (464)
Q Consensus 322 lp~~MryAGPREAllHA--iiRkNyGcTHfIVGRDHAG 357 (464)
+|..+--..|.+=+-.| ++ +.+||+|+++|-|..+
T Consensus 70 lpf~~a~~sae~F~~~aV~iL-~~l~v~~lv~G~e~g~ 106 (388)
T PRK13670 70 LPFLYSVQSADFFAEGAVSIL-DALGVDSLVFGSESGD 106 (388)
T ss_pred eCCchHhCCHHHHHHhHHHHH-HHcCCCEEEEcCCCCC
Confidence 66663333443333332 67 8899999999999433
No 43
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.73 E-value=1.7 Score=46.36 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=40.1
Q ss_pred CeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCC----------CCCCChHHHHHHHHHHHH
Q 012433 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK----------ADDVPLSWRMKQHEKVLE 308 (464)
Q Consensus 244 ~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK----------~~Di~~~~Rvr~ye~ll~ 308 (464)
+..+.+=+-+|+|.||..|+++| +.. ++.|.|.+..-..+ ..-++.+.|++-.+..+.
T Consensus 53 ~~~v~~G~FdP~H~GH~~lI~~A----~~~---~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~ 120 (399)
T PRK08099 53 KIGVVFGKFYPLHTGHIYLIQRA----CSQ---VDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFK 120 (399)
T ss_pred cEEEEEEecCCCCHHHHHHHHHH----HHH---CCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhC
Confidence 45666669999999999999754 444 25455444333322 345788999998888876
No 44
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=93.17 E-value=1 Score=41.88 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=54.5
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCC---CCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT---KADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~t---K~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~Mr 327 (464)
+-||+|.||..+++. |++. ++-|+|.|---.. |..-++.+.|++-.+..+++ + ..+.+..++.+..
T Consensus 7 ~F~P~H~GHl~li~~----a~~~---~d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~--~--~~~~v~~~~~~d~ 75 (158)
T cd02167 7 KFAPLHTGHVYLIYK----ALSQ---VDELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPD--Q--ENIVVHTLNEPDI 75 (158)
T ss_pred ccCCCCHHHHHHHHH----HHHH---CCEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC--C--CCEEEEeCCCCCC
Confidence 678999999999874 4455 2667776643322 23368999999999888762 2 3466667777554
Q ss_pred c-CChhHHHHHHHHHHHcC
Q 012433 328 Y-AGPTEVQWHAKARINAG 345 (464)
Q Consensus 328 y-AGPREAllHAiiRkNyG 345 (464)
. --..-..|=+.|+...+
T Consensus 76 ~~~~~~w~~w~~~v~~~v~ 94 (158)
T cd02167 76 PEYPNGWDIWSNRVKTLIA 94 (158)
T ss_pred CCCchhHHHHHHHHHHHHh
Confidence 3 22234445777776655
No 45
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=92.12 E-value=4.1 Score=37.08 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=55.4
Q ss_pred HHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEec--ccCCCCCC---CCChHHHHHHHHHHHHcCCC
Q 012433 238 FSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP--LGGYTKAD---DVPLSWRMKQHEKVLEDGVL 312 (464)
Q Consensus 238 f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~P--lvG~tK~~---Di~~~~Rvr~ye~ll~~~y~ 312 (464)
.++++=+.|++.=+-+-+|+||..+++.| .+.+.. -.+.+++ .....|+. =.+.+-|++..+++ ++.
T Consensus 6 ~~~~~~~~v~~~G~FDgvH~GH~~ll~~a----~~~~~~-~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~---~~V 77 (144)
T TIGR02199 6 ARARGKKIVFTNGCFDILHAGHVSYLQQA----RALGDR-LVVGVNSDASVKRLKGETRPINPEEDRAEVLAAL---SSV 77 (144)
T ss_pred HHHcCCCEEEEeCcccccCHHHHHHHHHH----HHhCCc-cEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhc---CCC
Confidence 33444467888889999999999999754 444311 1233322 21111221 45667777766543 111
Q ss_pred CCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCC
Q 012433 313 DPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 357 (464)
Q Consensus 313 p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAG 357 (464)
+.+++ ++ .+ -|.+-+ +.+++.++++|-|+..
T Consensus 78 --D~vi~--f~-~~---~~~~fi------~~l~~~~vv~G~d~~~ 108 (144)
T TIGR02199 78 --DYVVI--FD-ED---TPEELI------GELKPDILVKGGDYKV 108 (144)
T ss_pred --CEEEE--CC-CC---CHHHHH------HHhCCCEEEECCCCCC
Confidence 22333 32 11 243332 3799999999998754
No 46
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=91.88 E-value=0.79 Score=40.39 Aligned_cols=90 Identities=16% Similarity=0.228 Sum_probs=51.5
Q ss_pred CeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecc----cC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 012433 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPL----GG-YTKADDVPLSWRMKQHEKVLEDGVLDPETTV 318 (464)
Q Consensus 244 ~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~Pl----vG-~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~ 318 (464)
+.|++.=+-+++|+||..+++.| .+.+ +-|.+-.. .. ..+.--.+.+.|++..+.+ ++. +.+
T Consensus 2 ~~v~~~G~FDgvH~GH~~ll~~a----~~~~---~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~---~~v--d~v- 68 (129)
T cd02171 2 KVVITYGTFDLLHIGHLNLLERA----KALG---DKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESI---RYV--DLV- 68 (129)
T ss_pred cEEEEeeeeccCCHHHHHHHHHH----HHhC---CEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcC---Ccc--CEE-
Confidence 35677778899999999999754 4443 22322221 11 1122346678888876643 111 122
Q ss_pred EEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCC
Q 012433 319 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (464)
Q Consensus 319 l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHA 356 (464)
+ + +..+.+-+-. + +.+.++++++|.|+.
T Consensus 69 ~---~----~~~~~~f~~~--~-~~l~~~~vv~G~d~~ 96 (129)
T cd02171 69 I---P----ETNWEQKIED--I-KKYNVDVFVMGDDWE 96 (129)
T ss_pred e---c----CCCccChHHH--H-HHhCCCEEEECCCCc
Confidence 1 2 2333332222 2 678999999999984
No 47
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=90.60 E-value=0.48 Score=44.04 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=59.9
Q ss_pred CeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEE--ec--ccC--CCCCCCCChHHHHHHHHHHHHcCCCCCCce
Q 012433 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL--HP--LGG--YTKADDVPLSWRMKQHEKVLEDGVLDPETT 317 (464)
Q Consensus 244 ~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll--~P--lvG--~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~ 317 (464)
+.|+++=.-+=+|+||..|++.+.+.|.+.+.+-..+.. || +.+ ....--.+.+-|.+.++.+ --+.+
T Consensus 6 ~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~------Gvd~~ 79 (157)
T PF06574_consen 6 KSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL------GVDYV 79 (157)
T ss_dssp -EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT------TESEE
T ss_pred CcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc------CCCEE
Confidence 467787788899999999999888888776422112222 22 233 1122235667777765543 22333
Q ss_pred EEEecCCCcccC-ChhHHHHHHHHHHHcCCceeeecCCCC
Q 012433 318 VVSIFPSPMHYA-GPTEVQWHAKARINAGANFYIVGRDPA 356 (464)
Q Consensus 318 ~l~~lp~~MryA-GPREAllHAiiRkNyGcTHfIVGRDHA 356 (464)
+ ++|....++ =.-|.-++-++.++++|.+++||-|+.
T Consensus 80 ~--~~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~Dfr 117 (157)
T PF06574_consen 80 I--VIPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFR 117 (157)
T ss_dssp E--EE-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-E
T ss_pred E--EecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCcc
Confidence 3 345443322 133677888899999999999999965
No 48
>PRK13671 hypothetical protein; Provisional
Probab=90.40 E-value=1.3 Score=45.71 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=56.6
Q ss_pred EEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC---CCChHHHHHHHHHHHHcCCCCCCceEEEe
Q 012433 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD---DVPLSWRMKQHEKVLEDGVLDPETTVVSI 321 (464)
Q Consensus 246 VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~---Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~ 321 (464)
|+|.- |-||+|.||.++.+.+++ +.+ .+.+++.|-....+.+ -++.+.|.+.- +..| -|-|+==+
T Consensus 2 ~~GIIaeFNP~H~GHl~~~~~a~~---~~~--~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma---~~~G---~DLViELP 70 (298)
T PRK13671 2 AIGIIAEYNPFHNGHIYQINYIKN---KFP--NEKIIVILSGKYTQRGEIAVASFEKRKKIA---LKYG---VDKVIKLP 70 (298)
T ss_pred ceeEEeeeCCccHHHHHHHHHHHH---hcC--CCEEEEEECcCCCCCCCCCCCCHHHHHHHH---HHcC---CCEEEecc
Confidence 45555 789999999999875432 222 3556776766665544 34788888743 3322 23322111
Q ss_pred cCCCc----ccCChhHHHHHHHHHHHcCCceeeecCCCCCC
Q 012433 322 FPSPM----HYAGPTEVQWHAKARINAGANFYIVGRDPAGM 358 (464)
Q Consensus 322 lp~~M----ryAGPREAllHAiiRkNyGcTHfIVGRDHAGv 358 (464)
++.+. .||----. +-..+||+++.+|-++..+
T Consensus 71 ~~~a~~sAe~FA~gaV~-----lL~~lgvd~l~FGsE~~d~ 106 (298)
T PRK13671 71 FEYATQAAHIFAKGAIK-----KLNKEKIDKLIFGSESNDI 106 (298)
T ss_pred HHHHhhchHHHHHHHHH-----HHHHcCCCEEEECCCCCCH
Confidence 22222 12211112 3356899999999998775
No 49
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=89.54 E-value=1 Score=34.65 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=35.2
Q ss_pred EEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcE-EEec--ccCCCCC-CCCChHHHHHHHHHHHH
Q 012433 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPIL-LLHP--LGGYTKA-DDVPLSWRMKQHEKVLE 308 (464)
Q Consensus 247 vafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~L-ll~P--lvG~tK~-~Di~~~~Rvr~ye~ll~ 308 (464)
+.+=+-||+|.||.++++. |.+.+ +..+ +|.+ .....|. .-.+.+.|.+..+.+..
T Consensus 3 ~~~G~Fdp~H~GH~~~l~~----a~~~~--~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~ 62 (66)
T TIGR00125 3 IFVGTFDPFHLGHLDLLER----AKELF--DELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKY 62 (66)
T ss_pred EEcCccCCCCHHHHHHHHH----HHHhC--CEEEEEECchHhccccCCCCCCCHHHHHHHHHHhcc
Confidence 3444789999999999874 44554 1122 2222 2333344 55889999998876654
No 50
>PLN02388 phosphopantetheine adenylyltransferase
Probab=89.40 E-value=2.8 Score=40.12 Aligned_cols=140 Identities=21% Similarity=0.258 Sum_probs=81.0
Q ss_pred CCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEE----ecccCCCC-CC-CCChHHHHHHHHHHHHcCCCCCCc
Q 012433 243 ADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL----HPLGGYTK-AD-DVPLSWRMKQHEKVLEDGVLDPET 316 (464)
Q Consensus 243 w~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll----~PlvG~tK-~~-Di~~~~Rvr~ye~ll~~~y~p~~~ 316 (464)
-..|++.=|-+.+|+||..|++.|.+.|.+ .++| +|+....+ +. =.+.+.|++..+.++.. +.++.
T Consensus 19 ~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~------~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~--~~p~~ 90 (177)
T PLN02388 19 YGAVVLGGTFDRLHDGHRLFLKAAAELARD------RIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKS--IKPEL 90 (177)
T ss_pred CCeEEEEecCCccCHHHHHHHHHHHHhhhc------CEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHH--cCCCc
Confidence 357888889999999999999865433321 1222 33332221 22 24789999999999983 44443
Q ss_pred eEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhh--hCCCCCcceeeEeceE
Q 012433 317 TVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLS--MAPGLERLNILPFKVA 394 (464)
Q Consensus 317 ~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~--~~~~~~~i~i~~f~~~ 394 (464)
.+.+.|+.=.|+.. +. +-....+||..+...-| .+|=+ ...|+..++|+..+.
T Consensus 91 -~~~i~~i~D~~Gpt-------~~--~~~~d~LVVS~ET~~g~--------------~~IN~~R~e~Gl~pL~i~~v~~- 145 (177)
T PLN02388 91 -VVQAEPIIDPYGPS-------IV--DENLEAIVVSKETLPGG--------------LSVNKKRAERGLSQLKIEVVDI- 145 (177)
T ss_pred -eEEEEEecCCCCCc-------cc--CCCCCEEEEcHhHhhhH--------------HHHHHHHHHCCCCCeEEEEEEe-
Confidence 24566666666533 11 22356788888866443 22222 123444455543321
Q ss_pred EEecCCCceeecCCCCCcceeecCHHHHHHHHHC
Q 012433 395 AYDKTQGKMAFFDPSRAKDFLFISGTKMRTLARS 428 (464)
Q Consensus 395 ~Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~ 428 (464)
... .. +-..||.|.||+++.+
T Consensus 146 --v~~--------~~---~~~kiSST~iR~~~~~ 166 (177)
T PLN02388 146 --VPE--------ES---TGNKLSSTTLRRLEAE 166 (177)
T ss_pred --Eec--------CC---CCCccCHHHHHHHHHH
Confidence 111 11 1247999999998754
No 51
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=86.52 E-value=4.3 Score=37.23 Aligned_cols=74 Identities=22% Similarity=0.330 Sum_probs=43.0
Q ss_pred Eee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEE----ecccCCCC-CCC-CChHHHHHHHHHHHHcCCCCCCceEEE
Q 012433 248 AFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLL----HPLGGYTK-ADD-VPLSWRMKQHEKVLEDGVLDPETTVVS 320 (464)
Q Consensus 248 afQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll----~PlvG~tK-~~D-i~~~~Rvr~ye~ll~~~y~p~~~~~l~ 320 (464)
+|- |-||+|.||..|.+.| .+.+ .+-+++ .++...++ +.- .+.+.|++..+.+++. +-|.-. +.
T Consensus 3 ~~GGtFD~lH~GH~~Ll~~a----~~~~--~d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~-~~~~~~--~~ 73 (143)
T cd02164 3 AVGGTFDRLHDGHKILLSVA----FLLA--GEKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVD-LKPTLK--YE 73 (143)
T ss_pred EEcccCCCCCHHHHHHHHHH----HHHh--cCCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHh-cCCCce--EE
Confidence 344 8899999999998754 3432 122333 12221122 223 4899999999999983 444322 34
Q ss_pred ecCCCcccCCh
Q 012433 321 IFPSPMHYAGP 331 (464)
Q Consensus 321 ~lp~~MryAGP 331 (464)
+.|..=.| ||
T Consensus 74 i~~i~d~~-Gp 83 (143)
T cd02164 74 IVPIDDPY-GP 83 (143)
T ss_pred EEEccCCC-CC
Confidence 44544444 44
No 52
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=84.96 E-value=1.2 Score=38.94 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=32.7
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCC-C--CCCCChHHHHHHHHHHHH
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-K--ADDVPLSWRMKQHEKVLE 308 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~t-K--~~Di~~~~Rvr~ye~ll~ 308 (464)
|-||+|.||..+++. |.+.+.. +-+++.|..... | ..-++.+.|++-.+.++.
T Consensus 5 sFdP~H~GH~~~l~~----a~~~~~~-~~vi~v~~~~~~~k~~~~~~~~~~R~~ml~~~~~ 60 (157)
T PF01467_consen 5 SFDPPHNGHLNLLRE----ARELFDE-DLVIVVPSDNSPHKDKKPIFSFEERLEMLRAAFK 60 (157)
T ss_dssp --TT--HHHHHHHHH----HHHHSSE-SEEEEEEEEHHCHSTTSSSSTHHHHHHHHHHHHT
T ss_pred EcCcccHHHHHHHHH----HHHhccc-cccccccccccccccccccCcHHHHHHHHHHHHh
Confidence 569999999999874 5565411 114444443333 2 246899999999998887
No 53
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=83.83 E-value=15 Score=38.24 Aligned_cols=192 Identities=17% Similarity=0.167 Sum_probs=107.2
Q ss_pred HHHHHhcCCEEE---eeeEEEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEee-cCCCCchhhHHHHHHHHHHHHH
Q 012433 197 DQAITYAGNWLI---GGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQ-LRNPVHNGHALLMTDTRRRLLE 272 (464)
Q Consensus 197 ~~~~~~~g~~~v---gG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQ-TRNPlHRaHe~l~k~~~~~ale 272 (464)
+.++...|=|-| .+-+.+++.-. ..|.+|..+-++.|. --++|-+.. ..||.--||.||..+ |..
T Consensus 102 ~~lFk~~GF~~i~~~~~~ivlmENs~--trl~~y~~~L~k~r~-----~gkkIgaIVMNANPFTLGH~YLVEq----Aaa 170 (352)
T COG3053 102 AALFKQCGFSEIASAENVIVLMENSA--TRLKDYLSSLKKLRH-----PGKKIGAIVMNANPFTLGHRYLVEQ----AAA 170 (352)
T ss_pred HHHHHhCCceEeeccCceEEEeecCc--hhHHHHHHHHHHhcc-----CCCeeEEEEEeCCCccchhHHHHHH----HHh
Confidence 345555665555 34445555322 134444333333322 246788877 899999999999864 333
Q ss_pred hcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCc------eEE--EecCCCcccCChhH-----------
Q 012433 273 MGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPET------TVV--SIFPSPMHYAGPTE----------- 333 (464)
Q Consensus 273 ~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~------~~l--~~lp~~MryAGPRE----------- 333 (464)
. | +.|=.++|+ ....+||++.|++-.+.=+. +++.=+ .++ +.||.-. ----+
T Consensus 171 q---c-DwlHLFvV~-eD~S~f~y~~R~~Lv~~G~~--~l~Nvt~HsgsdYiISrATFP~YF--iKeq~vv~~s~t~iDl 241 (352)
T COG3053 171 Q---C-DWLHLFVVK-EDSSLFPYEDRLDLVKKGTA--DLPNVTVHSGSDYIISRATFPAYF--IKEQSVVNDSQTEIDL 241 (352)
T ss_pred h---C-CEEEEEEEe-cccccCCHHHHHHHHHHhhc--cCCceEEecCCCeEEEecccchhh--hhhHHHHHHHHHHHHH
Confidence 3 2 456666777 44567999999996655444 344311 122 2333322 11122
Q ss_pred HHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCC-CCCcceeeEeceEEEecCCCceeecCCCCCc
Q 012433 334 VQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAP-GLERLNILPFKVAAYDKTQGKMAFFDPSRAK 412 (464)
Q Consensus 334 AllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~-~~~~i~i~~f~~~~Yc~~c~~~~~~~ph~~~ 412 (464)
.||.--+++.+|.||=-||-++--.= ...|.. +-++++.... .-+.|+++..+..-|.
T Consensus 242 ~iFr~~iA~aLgIThRfVG~EP~c~v-----T~~YNq-~M~~~L~~~~~~~p~I~vvei~Rk~~~--------------- 300 (352)
T COG3053 242 KIFRKYIAPALGITHRFVGTEPFCRV-----TAIYNQ-QMRYWLEDPTISAPPIEVVEIERKKYQ--------------- 300 (352)
T ss_pred HHHHHHHHHHhCcceeeecCCCCcHH-----HHHHHH-HHHHHHhccCCCCCceEEEEeehhhhc---------------
Confidence 44555677899999999998865432 133322 2234443321 1123677666322211
Q ss_pred ceeecCHHHHHHHHHCCC
Q 012433 413 DFLFISGTKMRTLARSKE 430 (464)
Q Consensus 413 ~~~~iSGT~vR~~L~~G~ 430 (464)
---||.+.+|.+|+++.
T Consensus 301 -~~~ISAS~VR~~l~~~~ 317 (352)
T COG3053 301 -EMPISASRVRQLLAKND 317 (352)
T ss_pred -CCcccHHHHHHHHHhCC
Confidence 12599999999999874
No 54
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=81.81 E-value=3.2 Score=42.86 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=38.7
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccC--C-CCCCCCChHHHHHHHHHHHH
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG--Y-TKADDVPLSWRMKQHEKVLE 308 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG--~-tK~~Di~~~~Rvr~ye~ll~ 308 (464)
|-||+|.||..+++. |++. ++-|+|.|-.- . ++..-++.+.|++-.+..++
T Consensus 9 sFdP~H~GHl~ii~~----a~~~---~d~v~v~~~~~~~~~~~~~~~~~~~R~~~l~~~~~ 62 (325)
T TIGR01526 9 KFYPLHTGHIYLIYE----AFSK---VDELHIVVGSLFYDSKAKRPPPVQDRLRWLREIFK 62 (325)
T ss_pred ccCCCCHHHHHHHHH----HHHH---CCEEEEEECCCCcCccCCCCCCHHHHHHHHHHHhc
Confidence 889999999999875 4455 36677766431 1 45567899999999998887
No 55
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=77.63 E-value=3.1 Score=36.63 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=46.9
Q ss_pred EeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEec--ccCCC-CCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCC
Q 012433 248 AFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP--LGGYT-KADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPS 324 (464)
Q Consensus 248 afQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~P--lvG~t-K~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~ 324 (464)
++=+-+.+|+||..++++| .+.+.. ..+.+++ +.-.. +.-=.+.+-|++.++.+ +|. +.+ +|.
T Consensus 3 ~~G~FDg~H~GH~~~l~~a----~~~~~~-~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~---~~V--d~v----i~~ 68 (125)
T TIGR01518 3 TYGTFDLLHWGHINLLERA----KQLGDY-LIVALSTDEFNLQKQKKAYHSYEHRKLILETI---RYV--DLV----IPE 68 (125)
T ss_pred EcceeCCCCHHHHHHHHHH----HHcCCE-EEEEEechHHHhhcCCCCCCCHHHHHHHHHcC---CCc--cEE----ecC
Confidence 3345689999999999754 444311 1122222 22111 22235667787766643 111 122 221
Q ss_pred CcccCChhHHHHHHHHHHHcCCceeeecCCCCC
Q 012433 325 PMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 357 (464)
Q Consensus 325 ~MryAGPREAllHAiiRkNyGcTHfIVGRDHAG 357 (464)
. |.|.-.+- + +.+++.++++|-|+.|
T Consensus 69 ----~-~~~~f~~~-l-~~~~~~~vv~G~D~~g 94 (125)
T TIGR01518 69 ----K-SWEQKKQD-I-IDFNIDVFVMGDDWEG 94 (125)
T ss_pred ----C-CccchHHH-H-HHcCCCEEEECCCccc
Confidence 1 22222222 3 4799999999999954
No 56
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=75.79 E-value=5.6 Score=33.79 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=27.7
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCC---CCCChHHHHHHHHH
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKA---DDVPLSWRMKQHEK 305 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~---~Di~~~~Rvr~ye~ 305 (464)
+-||+|.||..+++. |.+.+ +.+++-+..-..+. +-.+.+.|++..++
T Consensus 7 ~Fdp~H~GH~~l~~~----a~~~~---d~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~ 57 (105)
T cd02156 7 EPGYLHIGHAKLICR----AKGIA---DQCVVRIDDNPPVKVWQDPHELEERKESIEE 57 (105)
T ss_pred CCCCCCHHHHHHHHH----HHHhC---CcEEEEEcCCCcccccCChHHHHHHHHHHHH
Confidence 349999999999874 55553 34555544333322 23444555554443
No 57
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=75.45 E-value=27 Score=31.77 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=51.4
Q ss_pred CeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEec----ccCCCC-CCCCChHHHHHHHHHHHHcCCCCCCceE
Q 012433 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP----LGGYTK-ADDVPLSWRMKQHEKVLEDGVLDPETTV 318 (464)
Q Consensus 244 ~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~P----lvG~tK-~~Di~~~~Rvr~ye~ll~~~y~p~~~~~ 318 (464)
+.|++.=+-+.+|+||..++++| .+.+ +.+++-. .+...+ .-=.+.+-|++..+.+ ++ -+.++
T Consensus 5 ~~vv~~G~FDgvH~GH~~ll~~a----~~~~---~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~l---g~--VD~vi 72 (144)
T cd02172 5 TVVLCHGVFDLLHPGHVRHLQAA----RSLG---DILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAAL---GF--VDYVV 72 (144)
T ss_pred EEEEEecccCCCCHHHHHHHHHH----HHhC---CeEEEEEeChHHhccCCCCCCCCHHHHHHHHHcc---CC--ccEEE
Confidence 45777778999999999999754 4443 2222222 122222 1235667787755432 11 12222
Q ss_pred EEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCC
Q 012433 319 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 357 (464)
Q Consensus 319 l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAG 357 (464)
++|. --|.| . ++ .+++.++++|-|+..
T Consensus 73 --~~~~----~~~~~-f----i~-~l~~~~vv~G~d~~f 99 (144)
T cd02172 73 --LFDN----PTALE-I----ID-ALQPNIYVKGGDYEN 99 (144)
T ss_pred --ECCC----CCHHH-H----HH-HhCCCEEEECCCccc
Confidence 2342 13444 2 22 599999999999863
No 58
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=73.39 E-value=19 Score=31.81 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=50.2
Q ss_pred eEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecc----c-CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEE
Q 012433 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPL----G-GYTKADDVPLSWRMKQHEKVLEDGVLDPETTVV 319 (464)
Q Consensus 245 ~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~Pl----v-G~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l 319 (464)
.|++.=+-||+|+||..+.+. |.+.+ +-+.+-+. + ..++.--.+.+-|++..+. ++ +. +.+++
T Consensus 3 ~v~~~G~FD~~H~GH~~ll~~----a~~~~---~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~-~~--~v--d~v~~ 70 (136)
T cd02170 3 RVYAAGTFDIIHPGHIRFLEE----AKKLG---DYLIVGVARDETVAKIKRRPILPEEQRAEVVEA-LK--YV--DEVIL 70 (136)
T ss_pred EEEEcCccCCCCHHHHHHHHH----HHHhC---CEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHc-CC--Cc--CEEEE
Confidence 455666889999999999874 44553 22332221 1 1122344677889987775 22 22 22221
Q ss_pred EecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCC
Q 012433 320 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (464)
Q Consensus 320 ~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHA 356 (464)
. + |.+- .+.+ .+ +.+.++|+|-|+-
T Consensus 71 --~--~-----~~~~-~~~l-~~-~~~~~vv~G~d~~ 95 (136)
T cd02170 71 --G--H-----PWSY-FKPL-EE-LKPDVIVLGDDQK 95 (136)
T ss_pred --C--C-----CCCH-hHHH-HH-HCCCEEEECCCCC
Confidence 1 1 4343 4444 33 5578999999874
No 59
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=72.26 E-value=4.3 Score=41.44 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=41.3
Q ss_pred cCCHHHHHHHHH-hCCCCeEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHH
Q 012433 228 RLSPAQLRDEFS-KRNADAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWR 299 (464)
Q Consensus 228 r~tP~e~R~~f~-~~gw~~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~R 299 (464)
--|.+++|+..+ .|.-.+-+||. |=+-+|.||..|+++|.+ +.....-.+|+||+=- -..+|++.+-|
T Consensus 4 i~ti~~lr~~~~~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~---~~d~VVVSIFVNP~QF-g~~EDl~~YPR 73 (285)
T COG0414 4 ITTIAELRQAIKALRKEGKRVGLVPTMGNLHEGHLSLVRRAKK---ENDVVVVSIFVNPLQF-GPNEDLDRYPR 73 (285)
T ss_pred eehHHHHHHHHHHHHHcCCEEEEEcCCcccchHHHHHHHHHhh---cCCeEEEEEEeChhhc-CCchhhhhCCC
Confidence 347889998876 22223458998 999999999999986532 2211112356666522 23455554443
No 60
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=69.04 E-value=7.9 Score=36.95 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=37.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCC-----CCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 012433 252 RNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK-----ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFP 323 (464)
Q Consensus 252 RNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK-----~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp 323 (464)
-.|+|.||-++++. |++. .|-|+| ++|... .+-+.+--|+-..+..+.+.-.+. |+.+..++
T Consensus 12 FqP~H~GHl~vi~~----al~~---vDeliI--~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~-r~~~~~v~ 78 (172)
T COG1056 12 FQPLHTGHLYVIKR----ALSK---VDELII--VIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDL-RVYLRPVF 78 (172)
T ss_pred cCCccHhHHHHHHH----HHHh---CCEEEE--EEccCcccccccCCCCccchhHHHHHHHHhcCCCc-eEEEEecC
Confidence 34999999999974 5565 243433 567633 334567778777776664333444 66554443
No 61
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=68.06 E-value=3.4 Score=42.28 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhC-CCCeEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHH
Q 012433 229 LSPAQLRDEFSKR-NADAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWR 299 (464)
Q Consensus 229 ~tP~e~R~~f~~~-gw~~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~R 299 (464)
.|.+|+|+..+.. --.+-+||. |=.-+|-||..|++.|++ +.....-.+||||+=-. ..+|+..+-|
T Consensus 5 ~~i~el~~~~~~~~~~~~~igfVPTMGaLHeGHlsLi~~A~~---~~d~vVVSIFVNP~QF~-~~eD~~~YPR 73 (280)
T PF02569_consen 5 RTISELREWIRAWRKAGKTIGFVPTMGALHEGHLSLIRRARA---ENDVVVVSIFVNPTQFG-PNEDFDKYPR 73 (280)
T ss_dssp -SHHHHHHHHHHHHHTTSSEEEEEE-SS--HHHHHHHHHHHH---HSSEEEEEE---GGGSS-TTSHTTTS--
T ss_pred ccHHHHHHHHHHHHHcCCeEEEECCCchhhHHHHHHHHHHHh---CCCEEEEEECcCcccCC-CcchhhhCCC
Confidence 4788999988641 124678888 999999999999986542 32111124788887543 3466665444
No 62
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=67.96 E-value=7.9 Score=41.27 Aligned_cols=96 Identities=16% Similarity=0.329 Sum_probs=31.5
Q ss_pred EEEeec-CCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCC---CChHHHHHHHHHHHHcCCCCCCceEEEe
Q 012433 246 VFAFQL-RNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADD---VPLSWRMKQHEKVLEDGVLDPETTVVSI 321 (464)
Q Consensus 246 VvafQT-RNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~D---i~~~~Rvr~ye~ll~~~y~p~~~~~l~~ 321 (464)
|+|.-+ =||.|+||.|++..++ +. ++++.+++..-+-..+.|+ ++..+|-++ .++.| -|-| +-
T Consensus 3 ~~GIIaEYNPFHnGH~y~i~~~k----~~-~~ad~ii~vMSGnFvQRGEPAi~dKw~RA~~---AL~~G---aDLV-iE- 69 (388)
T PF05636_consen 3 VVGIIAEYNPFHNGHLYQIEQAK----KI-TGADVIIAVMSGNFVQRGEPAIIDKWTRAEM---ALKNG---ADLV-IE- 69 (388)
T ss_dssp ----E---TT--HHHHHHHHHHH--------TSSEEEEEE--TTSBTSSB-SS-HHHHHHH---HHHHT----SEE-EE-
T ss_pred CCCeEEeECCccHHHHHHHHHHh----cc-CCCCEEEEEECCCcccCCCeeeCCHHHHHHH---HHHcC---CCEE-EE-
Confidence 455553 6999999999987653 32 2245566666666667776 778888774 34434 2333 22
Q ss_pred cCCCc------ccCChhHHHHHHHHHHHcCCceeeecCCCCCCC
Q 012433 322 FPSPM------HYAGPTEVQWHAKARINAGANFYIVGRDPAGMG 359 (464)
Q Consensus 322 lp~~M------ryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG 359 (464)
||... .||---=.| -...||+++.+|-++..+-
T Consensus 70 LP~~~a~qsA~~FA~gaV~l-----L~~lgvd~l~FGsE~~~~~ 108 (388)
T PF05636_consen 70 LPVVYALQSAEYFARGAVSL-----LNALGVDYLSFGSESGDIE 108 (388)
T ss_dssp ---G----------------------------------------
T ss_pred CCCccccccccccccccccc-----ccccccccccccccccccc
Confidence 23222 232111122 3557999999999987764
No 63
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=65.57 E-value=3.9 Score=41.86 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHh-CCCCeEEEee-cCCCCchhhHHHHHHHHH
Q 012433 229 LSPAQLRDEFSK-RNADAVFAFQ-LRNPVHNGHALLMTDTRR 268 (464)
Q Consensus 229 ~tP~e~R~~f~~-~gw~~VvafQ-TRNPlHRaHe~l~k~~~~ 268 (464)
.|++|+|+..+. +...+-+||. |=.-+|+||..|++.+.+
T Consensus 5 ~~~~~l~~~~~~~~~~g~~ig~VpTmG~LH~GH~~LI~~a~~ 46 (282)
T TIGR00018 5 ETIPLLRQYIRQLRMEGKTVGFVPTMGNLHDGHMSLIDRAVA 46 (282)
T ss_pred ecHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 478899998864 2223567776 433399999999986543
No 64
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=63.26 E-value=3.7 Score=36.32 Aligned_cols=38 Identities=8% Similarity=0.123 Sum_probs=29.4
Q ss_pred cceeeEeceEEEecCCCceee-------cCCC-CCcceeecCHHHH
Q 012433 385 RLNILPFKVAAYDKTQGKMAF-------FDPS-RAKDFLFISGTKM 422 (464)
Q Consensus 385 ~i~i~~f~~~~Yc~~c~~~~~-------~~ph-~~~~~~~iSGT~v 422 (464)
.|+|...+..+||..|+...+ .||+ +..+..-++|.++
T Consensus 61 ~L~i~~~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~i~~G~El 106 (114)
T PRK03681 61 KLHLEEQEAECWCETCQQYVTLLTQRVRRCPQCHGDMLRIVADDGL 106 (114)
T ss_pred EEEEEeeCcEEEcccCCCeeecCCccCCcCcCcCCCCcEEccCCeE
Confidence 377778888999999998853 1998 7667777888665
No 65
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=62.64 E-value=38 Score=35.95 Aligned_cols=98 Identities=21% Similarity=0.333 Sum_probs=54.4
Q ss_pred EEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccC-CCCCCC---CChHHHHHHHHHHHHcCCCCCCceEEE
Q 012433 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG-YTKADD---VPLSWRMKQHEKVLEDGVLDPETTVVS 320 (464)
Q Consensus 246 VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG-~tK~~D---i~~~~Rvr~ye~ll~~~y~p~~~~~l~ 320 (464)
++|+- -=||.|+||.|+++.|++ . ++++ ..+--+.| .+.-|. ++...|.+ ..++.| - -.
T Consensus 3 ~~Gii~eyNPfHnGH~y~i~~Ar~----~-~~~d-~~i~~msgdf~qRgepai~~k~~r~~---~aL~~g-----~--D~ 66 (358)
T COG1323 3 SIGIIAEYNPFHNGHQYHINKARE----E-FKGD-EIIAVMSGDFTQRGEPAIGHKWERKK---MALEGG-----A--DL 66 (358)
T ss_pred ceeeeeecCcccccHHHHHHHHHH----h-ccCC-ceEEeeecchhhcCCCccccHHHHHh---hhhhcC-----c--eE
Confidence 45555 369999999999986543 1 2233 33333334 333333 23333332 223311 1 12
Q ss_pred ecCCCcccCC---hhHHHHHHHHHHHcCCceeeecCCCCCCC
Q 012433 321 IFPSPMHYAG---PTEVQWHAKARINAGANFYIVGRDPAGMG 359 (464)
Q Consensus 321 ~lp~~MryAG---PREAllHAiiRkNyGcTHfIVGRDHAGvG 359 (464)
++|++.-|+| +-=|.--..+-.|.||+.+.+|-.+-|+-
T Consensus 67 VIelP~~~s~q~a~~fa~~av~il~~l~~~~i~fgse~~~i~ 108 (358)
T COG1323 67 VIELPLERSGQGAPYFATRAVRILNALGGDDIAFGSPPMGIM 108 (358)
T ss_pred EEEcceEEecCCCchhhHHHHHHHHhcCCCeEEEeCCCCchH
Confidence 2344444443 33344456777899999999999887764
No 66
>PLN02660 pantoate--beta-alanine ligase
Probab=61.70 E-value=5.3 Score=40.96 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHh-CCCCeEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEeccc
Q 012433 229 LSPAQLRDEFSK-RNADAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLG 286 (464)
Q Consensus 229 ~tP~e~R~~f~~-~gw~~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~Plv 286 (464)
.|.+|+|+..+. +.-.+-+||. |=.-+|+||..|++.+++.+- ...-..++||.-
T Consensus 4 ~~~~~lr~~~~~~~~~g~~igfVpTmG~LH~GH~~LI~~a~~~a~---~vVvTffvnP~q 60 (284)
T PLN02660 4 RDKAAMRAWSRAQRAQGKRIALVPTMGYLHEGHLSLVRAARARAD---VVVVSIYVNPGQ 60 (284)
T ss_pred ccHHHHHHHHHHHHHcCCeEEEEEcCchhhHHHHHHHHHHHHhCC---EEEEEEeCChHH
Confidence 478899988764 2224567887 433399999999986543211 001135666765
No 67
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=59.93 E-value=4.7 Score=35.70 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=28.7
Q ss_pred cceeeEeceEEEecCCCceeec------CCC-CCcceeecCHHHH
Q 012433 385 RLNILPFKVAAYDKTQGKMAFF------DPS-RAKDFLFISGTKM 422 (464)
Q Consensus 385 ~i~i~~f~~~~Yc~~c~~~~~~------~ph-~~~~~~~iSGT~v 422 (464)
.|.|...+..++|+.|+...+. ||+ +.....-++|.++
T Consensus 61 ~L~I~~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~~G~El 105 (115)
T TIGR00100 61 KLNIEDEPVECECEDCSEEVSPEIDLYRCPKCHGIMLQVRAGKEL 105 (115)
T ss_pred EEEEEeeCcEEEcccCCCEEecCCcCccCcCCcCCCcEEecCCeE
Confidence 3677778889999999987642 998 6666667787655
No 68
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=57.84 E-value=6.8 Score=39.97 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHh-CCCCeEEEee-cCCCCchhhHHHHHHHHH
Q 012433 229 LSPAQLRDEFSK-RNADAVFAFQ-LRNPVHNGHALLMTDTRR 268 (464)
Q Consensus 229 ~tP~e~R~~f~~-~gw~~VvafQ-TRNPlHRaHe~l~k~~~~ 268 (464)
.|++|+|+..+. +.-.+-+||. |=.=+|+||..|++.|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~ig~V~TmG~LH~GH~~LI~~a~~ 46 (277)
T cd00560 5 TTIAELRAWLRNWRAQGKTIGFVPTMGALHEGHLSLVRRARA 46 (277)
T ss_pred ccHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 478888888764 1223445554 544499999999986543
No 69
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=57.68 E-value=5.4 Score=35.24 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=29.1
Q ss_pred cceeeEeceEEEecCCCceee------cCCC-CCcceeecCHHHH
Q 012433 385 RLNILPFKVAAYDKTQGKMAF------FDPS-RAKDFLFISGTKM 422 (464)
Q Consensus 385 ~i~i~~f~~~~Yc~~c~~~~~------~~ph-~~~~~~~iSGT~v 422 (464)
.|+|...+..++|..|+.... .||+ +..+..-++|.++
T Consensus 61 ~L~I~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~~G~El 105 (113)
T PRK12380 61 DLHIVYKPAQAWCWDCSQVVEIHQHDAQCPHCHGERLRVDTGDSL 105 (113)
T ss_pred EEEEEeeCcEEEcccCCCEEecCCcCccCcCCCCCCcEEccCCeE
Confidence 377777888999999997653 2998 6667777888665
No 70
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=54.57 E-value=23 Score=27.58 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=20.0
Q ss_pred EEecCHHHHHhcCC---------CCeEEEeCCCCcEEEEEEeC
Q 012433 138 VLAIDDEQKRRIGE---------STRVALVDSDDNVVAILNDI 171 (464)
Q Consensus 138 ~L~v~~e~~~~l~~---------g~~vaL~d~eG~~lAiL~V~ 171 (464)
+++++++++..+.- ++.++..+++|+++|+++-.
T Consensus 3 ~~~ls~~ea~~l~~Gr~l~~~~~~g~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 3 VRELSAEEARDLRHGRRLPAAGPPGPVAAFAPDGRLVALLEER 45 (56)
T ss_dssp EEE--HHHHHHHHTT---B-----S-EEEE-TTS-EEEEEEEE
T ss_pred ceECCHHHHHHHhCCCccCCCCCCceEEEECCCCcEEEEEEcc
Confidence 45667777766643 45567788999999999643
No 71
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=50.54 E-value=7.7 Score=34.17 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=24.4
Q ss_pred cceeeEeceEEEecCCCceee------cCCC-CCcceeecCHHHH
Q 012433 385 RLNILPFKVAAYDKTQGKMAF------FDPS-RAKDFLFISGTKM 422 (464)
Q Consensus 385 ~i~i~~f~~~~Yc~~c~~~~~------~~ph-~~~~~~~iSGT~v 422 (464)
.|.|...+..++|..|+.-.+ .||+ +..+..-+||.++
T Consensus 61 ~L~Ie~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~~G~el 105 (113)
T PF01155_consen 61 ELEIEEVPARARCRDCGHEFEPDEFDFSCPRCGSPDVEIISGREL 105 (113)
T ss_dssp EEEEEEE--EEEETTTS-EEECHHCCHH-SSSSSS-EEEEESS-E
T ss_pred EEEEEecCCcEECCCCCCEEecCCCCCCCcCCcCCCcEEccCCeE
Confidence 367777888999999998765 2998 6666667888664
No 72
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=47.55 E-value=7 Score=34.76 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=28.1
Q ss_pred cceeeEeceEEEecCCCceee------c-CCC-CCcceeecCHHHH
Q 012433 385 RLNILPFKVAAYDKTQGKMAF------F-DPS-RAKDFLFISGTKM 422 (464)
Q Consensus 385 ~i~i~~f~~~~Yc~~c~~~~~------~-~ph-~~~~~~~iSGT~v 422 (464)
.|+|...+..++|..|+...+ . ||. ++.+..-++|.++
T Consensus 62 ~L~Ie~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~i~~G~El 107 (117)
T PRK00564 62 ILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGNEM 107 (117)
T ss_pred EEEEEecCCEEEhhhCCCccccCCccCCcCcCCCCCceEEecCCEE
Confidence 377778888999999997643 2 998 6666666777654
No 73
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=46.89 E-value=29 Score=29.60 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=38.2
Q ss_pred EEEeeeEEEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCch------hhHHHHHHHHHHHHHhcCCCCc
Q 012433 206 WLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHN------GHALLMTDTRRRLLEMGYQNPI 279 (464)
Q Consensus 206 ~~vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHR------aHe~l~k~~~~~ale~g~~~~~ 279 (464)
+||+|+++++.. ++ +-.=.+.-+.++++|.. |+ ||.+. -.+.-|+..++... .||.
T Consensus 1 iYIaGPmtG~~~--~N------~~~f~~~a~~L~~~G~~-vv-----nPa~~~~~~~~~~~~ym~~~l~~L~----~cD~ 62 (92)
T PF14359_consen 1 IYIAGPMTGLPD--YN------RPAFNAAAKRLRAKGYE-VV-----NPAELGIPEGLSWEEYMRICLAMLS----DCDA 62 (92)
T ss_pred CeEeCCcCCCcc--hH------HHHHHHHHHHHHHCCCE-Ee-----CchhhCCCCCCCHHHHHHHHHHHHH----hCCE
Confidence 489999998752 11 11223444556667743 33 77776 44555554443322 2577
Q ss_pred EEEecccCCCCCCC
Q 012433 280 LLLHPLGGYTKADD 293 (464)
Q Consensus 280 Lll~PlvG~tK~~D 293 (464)
+++.| ||..+-.
T Consensus 63 i~~l~--gWe~S~G 74 (92)
T PF14359_consen 63 IYMLP--GWENSRG 74 (92)
T ss_pred EEEcC--CcccCcc
Confidence 77766 7766543
No 74
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=45.04 E-value=31 Score=35.27 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHhCC-CCeEEEee-cCCCCchhhHHHHHHHHH
Q 012433 229 LSPAQLRDEFSKRN-ADAVFAFQ-LRNPVHNGHALLMTDTRR 268 (464)
Q Consensus 229 ~tP~e~R~~f~~~g-w~~VvafQ-TRNPlHRaHe~l~k~~~~ 268 (464)
.|.+|+|+.++... -.+-+||- |=.=+|+||..|++.+.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~i~~v~tmG~lH~GH~~Li~~a~~ 46 (281)
T PRK00380 5 TTIAELRAALRRWRREGKRIGLVPTMGALHEGHLSLVREARA 46 (281)
T ss_pred ecHHHHHHHHHHHHHcCCeEEEEEccCceeHHHHHHHHHHHH
Confidence 46888888875321 12345555 433399999999986543
No 75
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=44.45 E-value=44 Score=37.09 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHhCCCCeEEEee-cCCCCchhhHHHHHHHH
Q 012433 229 LSPAQLRDEFSKRNADAVFAFQ-LRNPVHNGHALLMTDTR 267 (464)
Q Consensus 229 ~tP~e~R~~f~~~gw~~VvafQ-TRNPlHRaHe~l~k~~~ 267 (464)
.|++|+|+..+...-+ -+||. |=.-+|.||..|++.|+
T Consensus 5 ~~~~~l~~~~~~~~~~-~ig~VPTMG~LH~GHlsLi~~A~ 43 (512)
T PRK13477 5 RTVAGLRAWLRQQRSE-TIGFVPTMGALHQGHLSLIRRAR 43 (512)
T ss_pred ecHHHHHHHHHHhcCC-cEEEECCCcchhHHHHHHHHHHH
Confidence 4789999998753223 67888 99999999999998653
No 76
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=43.95 E-value=11 Score=33.88 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=27.9
Q ss_pred cceeeEeceEEEecCCCce-----e--------ecCCC-CCcceeecCHHHHH
Q 012433 385 RLNILPFKVAAYDKTQGKM-----A--------FFDPS-RAKDFLFISGTKMR 423 (464)
Q Consensus 385 ~i~i~~f~~~~Yc~~c~~~-----~--------~~~ph-~~~~~~~iSGT~vR 423 (464)
.|.|...+..+|| .|+.. . ..||+ +..+..-++|.+++
T Consensus 61 ~L~I~~vp~~~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i~~G~El~ 112 (124)
T PRK00762 61 DLIVEMIPVEIEC-ECGYEGVVDEDEIDHYAAVIECPVCGNKRAHILGGRECN 112 (124)
T ss_pred EEEEEecCeeEEe-eCcCcccccccchhccccCCcCcCCCCCCCEEecCCeEE
Confidence 3777778889999 99977 1 23998 66666677886653
No 77
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=43.72 E-value=47 Score=28.25 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=30.1
Q ss_pred EEecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCccc
Q 012433 138 VLAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEIY 174 (464)
Q Consensus 138 ~L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~eiy 174 (464)
.+.++.++|++ |+.||.|.|....|++.+.+.+++--
T Consensus 32 ~v~i~p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~~~~~i 70 (116)
T cd02786 32 TLLIHPADAAARGIADGDLVVVFNDRGSVTLRAKVTDDV 70 (116)
T ss_pred EEEECHHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCCC
Confidence 35577777764 68999999999999999999988744
No 78
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=43.06 E-value=46 Score=40.53 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=60.9
Q ss_pred cCCCCCCCChhhhhhccccCCeecCCCCeeecceeEEEecCHHHHHhcCCCCeEEEeCC-CCcEEEEEEeCccccCCHHH
Q 012433 102 ASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDS-DDNVVAILNDIEIYKHPKEE 180 (464)
Q Consensus 102 fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~pwpiPI~L~v~~e~~~~l~~g~~vaL~d~-eG~~lAiL~V~eiy~~Dk~~ 180 (464)
|.+++.+++.++|.+|- |.-+ -+.+.|+++..+.++.++...|+++ +|++...+...|+| ++
T Consensus 377 f~~yd~~~~~e~y~tv~---------~qN~----N~SV~VtDeFM~aVe~d~~w~L~~p~~gkv~ktV~AReLw----~k 439 (1220)
T PRK07562 377 FPTYDTDWDSEAYLTVS---------GQNS----NNSVRVTDEFLRAVENDGDWNLTARTDGKVAKTLKARDLW----EK 439 (1220)
T ss_pred ccccccccccchhcccc---------cccc----cceeccCHHHHHHHHCCCCeeeeccCCCceeeEeeHHHHH----HH
Confidence 77899999999999984 2222 3367789999999999999999875 68999999999999 45
Q ss_pred HHHHhhCCCCCCChhHH
Q 012433 181 RIARTWGTTAPGLPYVD 197 (464)
Q Consensus 181 ea~~vfGT~d~~HPgV~ 197 (464)
.++..|-|.| ||+.
T Consensus 440 I~~aawetGd---PgI~ 453 (1220)
T PRK07562 440 IGYAAWASAD---PGLQ 453 (1220)
T ss_pred HHHHHHHHCC---ceEE
Confidence 7777777655 6664
No 79
>PRK13671 hypothetical protein; Provisional
Probab=41.18 E-value=44 Score=34.60 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=54.9
Q ss_pred EeeeEEEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhhHHH-HHHHH-HHHHHhcCCCCcEEE-ec
Q 012433 208 IGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALL-MTDTR-RRLLEMGYQNPILLL-HP 284 (464)
Q Consensus 208 vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaHe~l-~k~~~-~~ale~g~~~~~Lll-~P 284 (464)
+.|=|.-+||+|.+ --..+++..++.+.+.|+..-+.||+||+.-.+ -+..| ++|++.| .+|+| .|
T Consensus 2 ~~GIIaeFNP~H~G--------Hl~~~~~a~~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G---~DLViELP 70 (298)
T PRK13671 2 AIGIIAEYNPFHNG--------HIYQINYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYG---VDKVIKLP 70 (298)
T ss_pred ceeEEeeeCCccHH--------HHHHHHHHHHhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcC---CCEEEecc
Confidence 45777888888875 245677777788899999999999999996655 22221 3566665 55666 57
Q ss_pred ccCCCCCCCCChHHHHH
Q 012433 285 LGGYTKADDVPLSWRMK 301 (464)
Q Consensus 285 lvG~tK~~Di~~~~Rvr 301 (464)
++..+.+.|+=+.--|+
T Consensus 71 ~~~a~~sAe~FA~gaV~ 87 (298)
T PRK13671 71 FEYATQAAHIFAKGAIK 87 (298)
T ss_pred HHHHhhchHHHHHHHHH
Confidence 77666654443333333
No 80
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=40.51 E-value=2.8 Score=41.58 Aligned_cols=48 Identities=25% Similarity=0.474 Sum_probs=37.3
Q ss_pred EEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccC------CHHHHHHHhhCCCCCC
Q 012433 138 VLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKH------PKEERIARTWGTTAPG 192 (464)
Q Consensus 138 ~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~------Dk~~ea~~vfGT~d~~ 192 (464)
=+.|..+.+..++.|.++.|-+ +|.+++||+. -.++..+++|||||+.
T Consensus 20 EvlvdP~~a~~~R~g~~vdlee-------vLa~~~Vf~da~KG~~Ase~dL~k~FgTtd~~ 73 (234)
T COG1500 20 EVLVDPNKALEYREGKEVDLEE-------VLATETVFKDASKGEKASEEDLKKAFGTTDPD 73 (234)
T ss_pred EEEECHhHHHHHHcCCCCCHHH-------HHhHHHHHHhccccccCCHHHHHHHhCCCCHH
Confidence 3456677788899999888865 6788999987 2356789999999943
No 81
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=40.04 E-value=21 Score=32.49 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=45.2
Q ss_pred ccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCeeecceeEEEecCHHHHHhcCCCCeEEEe
Q 012433 79 ATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALV 158 (464)
Q Consensus 79 ~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~pwpiPI~L~v~~e~~~~l~~g~~vaL~ 158 (464)
..+....|..++++=|-.=.+.+ =||+.++|+++- .+.|.+ ++.+.-|++|..+.+.
T Consensus 60 ~kve~a~ie~~~~q~lY~dg~~~-----~FMD~etyeq~~--------------v~~~~~----~d~~~~l~eg~~v~v~ 116 (131)
T COG0231 60 DKVEVAIVERKTAQYLYIDGDFY-----VFMDLETYEQYE--------------LPKDQI----GDAAKFLKEGMEVEVL 116 (131)
T ss_pred CEEEEeEEeeeeEEEEEcCCCeE-----EEccCCCceEEE--------------ecchhh----hhHHHhcCCCCEEEEE
Confidence 34556666666665222222222 399999999985 244444 6778889999999887
Q ss_pred CCCCcEEEEE
Q 012433 159 DSDDNVVAIL 168 (464)
Q Consensus 159 d~eG~~lAiL 168 (464)
--+|+++++-
T Consensus 117 ~~~g~~i~v~ 126 (131)
T COG0231 117 LYNGEPIAVE 126 (131)
T ss_pred EECCEEEEEE
Confidence 6689999863
No 82
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=39.91 E-value=2.3e+02 Score=26.13 Aligned_cols=90 Identities=16% Similarity=0.080 Sum_probs=53.7
Q ss_pred eEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCC------CCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 012433 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY------TKADDVPLSWRMKQHEKVLEDGVLDPETTV 318 (464)
Q Consensus 245 ~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~------tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~ 318 (464)
+|...=+-+|+|.||..++++ |.++| ..+-||.-+... +..-=++.+.|+.+.+++ + |.. .++
T Consensus 4 rV~~~G~FDl~H~GHi~~L~~----A~~lg--~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~-~--~Vd--~Vi 72 (150)
T cd02174 4 RVYVDGCFDLFHYGHANALRQ----AKKLG--PNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHC-K--WVD--EVV 72 (150)
T ss_pred EEEEeCccCCCCHHHHHHHHH----HHHhC--CCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhc-C--CCC--eEE
Confidence 455556899999999999874 45563 013344333221 112348899999988865 3 442 343
Q ss_pred EEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCC
Q 012433 319 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (464)
Q Consensus 319 l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHA 356 (464)
+. -|. +..+. +-+.++|+.++.|-|..
T Consensus 73 ~~-~~~-----~~~~~-----~i~~~~~d~vv~G~d~~ 99 (150)
T cd02174 73 EG-APY-----VTTPE-----FLDKYKCDYVAHGDDIY 99 (150)
T ss_pred EC-CCC-----CChHH-----HHHHhCCCEEEECCCCC
Confidence 32 122 11122 23578999999998765
No 83
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=39.73 E-value=56 Score=27.64 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=28.9
Q ss_pred EecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCccc
Q 012433 139 LAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEIY 174 (464)
Q Consensus 139 L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~eiy 174 (464)
+-++.++|++ |+.||.|.|..+.|++.+.+.+++--
T Consensus 37 v~inp~dA~~lgi~~Gd~V~v~~~~G~~~~~v~~~~~i 74 (120)
T cd00508 37 VEIHPEDAARLGIKDGDLVRVSSRRGSVVVRARVTDRV 74 (120)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCEEEEEEEEECCCc
Confidence 4567777765 58999999999899999888887643
No 84
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=39.36 E-value=62 Score=28.10 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=28.9
Q ss_pred EEecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCcc
Q 012433 138 VLAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEI 173 (464)
Q Consensus 138 ~L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~ei 173 (464)
++-++.+++++ |+.||.|.|....|.+.+.+.+++-
T Consensus 34 ~v~inp~dA~~~gi~~Gd~V~v~s~~G~~~~~v~v~~~ 71 (130)
T cd02781 34 VAEINPETAAKLGIADGDWVWVETPRGRARQKARLTPG 71 (130)
T ss_pred EEEECHHHHHHcCCCCCCEEEEECCCCEEEEEEEECCC
Confidence 35567777765 5899999999999999988887763
No 85
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=39.11 E-value=76 Score=27.11 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=29.8
Q ss_pred EecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCcccc
Q 012433 139 LAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEIYK 175 (464)
Q Consensus 139 L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~eiy~ 175 (464)
+.++.++|++ |+.||.|.|..+.|++.+.+.+++--+
T Consensus 37 v~i~p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~v~~~i~ 75 (122)
T cd02792 37 VEISPELAAERGIKNGDMVWVSSPRGKIKVKALVTDRVK 75 (122)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCceEEEEEEECCCcC
Confidence 4467777765 589999999999999999999887543
No 86
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=38.76 E-value=70 Score=27.00 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=29.1
Q ss_pred EecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCcccc
Q 012433 139 LAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEIYK 175 (464)
Q Consensus 139 L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~eiy~ 175 (464)
+-++.++|++ |+.||.|.|..+.|.+.+.+.+++--.
T Consensus 37 v~in~~dA~~lgi~~Gd~V~v~~~~G~~~~~v~i~~~i~ 75 (116)
T cd02790 37 VEINPEDAKRLGIEDGEKVRVSSRRGSVEVRARVTDRVP 75 (116)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCCcC
Confidence 4467777765 589999999998999988888876443
No 87
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=38.69 E-value=52 Score=28.04 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=29.2
Q ss_pred EEecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCc
Q 012433 138 VLAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIE 172 (464)
Q Consensus 138 ~L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~e 172 (464)
.+.++.++|++ |+.||.|.+..+.|.+.+...+++
T Consensus 32 ~v~i~p~dA~~lgI~dGd~V~v~s~~G~i~~~a~v~~ 68 (112)
T cd02787 32 VVFMNPDDIARLGLKAGDRVDLESAFGDGQGRIVRGF 68 (112)
T ss_pred EEEECHHHHHHhCCCCCCEEEEEecCCCCeEEEEecc
Confidence 46677777775 689999999999999999888877
No 88
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=38.08 E-value=75 Score=27.59 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=31.4
Q ss_pred EEecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCccccC
Q 012433 138 VLAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEIYKH 176 (464)
Q Consensus 138 ~L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~eiy~~ 176 (464)
.+.++.++|++ |+.||.|.|..+.|++.+...+++--+.
T Consensus 33 ~v~i~p~dA~~~gi~~Gd~V~v~s~~G~i~~~a~~~~~v~~ 73 (124)
T cd02785 33 RVKINPIDAAARGIAHGDLVEVYNDRGSVVCKAKVDDGIQP 73 (124)
T ss_pred eEEECHHHHHHcCCCCCCEEEEEeCCCEEEEEEEECCCcCC
Confidence 35678887774 6899999999999999999998875443
No 89
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=38.03 E-value=72 Score=27.42 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=29.9
Q ss_pred EecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCcccc
Q 012433 139 LAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEIYK 175 (464)
Q Consensus 139 L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~eiy~ 175 (464)
+.++.++|++ |+.||.|.|..+.|.+.+.+.+++--.
T Consensus 35 v~in~~dA~~lgi~~Gd~V~v~s~~G~i~~~~~~~~~i~ 73 (115)
T cd02779 35 IEVNPEDAKREGLKNGDLVEVYNDYGSTTAMAYVTNTVK 73 (115)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCEEEEEEEEECCCcC
Confidence 5567777664 689999999999999999999887543
No 90
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=37.93 E-value=82 Score=29.11 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=54.1
Q ss_pred eEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEeccc-----CCCC---CCCCChHHHHHHHHHHHHcCCCCCC
Q 012433 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLG-----GYTK---ADDVPLSWRMKQHEKVLEDGVLDPE 315 (464)
Q Consensus 245 ~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~Plv-----G~tK---~~Di~~~~Rvr~ye~ll~~~y~p~~ 315 (464)
+||-+- |-+|+|.||..++++ |.+.| +-| |.-+. -..| .--++.+.|+...++ ++ +.+
T Consensus 3 ~iv~~~G~FD~~H~GHi~~L~~----A~~lg---d~l-iVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~-~~--~Vd-- 69 (152)
T cd02173 3 KVVYVDGAFDLFHIGHIEFLEK----ARELG---DYL-IVGVHDDQTVNEYKGSNYPIMNLHERVLSVLA-CR--YVD-- 69 (152)
T ss_pred eEEEEcCcccCCCHHHHHHHHH----HHHcC---CEE-EEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHh-cC--CCC--
Confidence 445554 899999999999874 55665 433 33332 1223 246899999998865 44 443
Q ss_pred ceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCC
Q 012433 316 TTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 357 (464)
Q Consensus 316 ~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAG 357 (464)
.+++. -|. +. -.-+-+-++|+.++.|-|..+
T Consensus 70 ~V~v~-~~~-----~~-----~~~~~~~~~~d~vv~G~d~~~ 100 (152)
T cd02173 70 EVVIG-APY-----VI-----TKELIEHFKIDVVVHGKTEET 100 (152)
T ss_pred EEEEC-CCC-----cc-----hHHHHHHhCCCEEEECCCCcc
Confidence 34442 122 11 122235699999999988653
No 91
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=36.18 E-value=55 Score=28.28 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=28.7
Q ss_pred EecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCcc
Q 012433 139 LAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEI 173 (464)
Q Consensus 139 L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~ei 173 (464)
+.++.++|++ |+.||.|.|....|.+.+...+++-
T Consensus 32 v~i~p~~A~~~gi~~Gd~V~v~s~~g~i~~~a~~~~~ 68 (121)
T cd02794 32 VWINPLDAAARGIKDGDRVLVFNDRGKVIRPVKVTER 68 (121)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCceEEEEEEECCC
Confidence 4577777774 6899999999999999988888764
No 92
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=35.96 E-value=1.3e+02 Score=31.63 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=37.3
Q ss_pred EEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEe----cccCCCCCCCCChHHHHHHHHHHHH
Q 012433 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH----PLGGYTKADDVPLSWRMKQHEKVLE 308 (464)
Q Consensus 246 VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~----PlvG~tK~~Di~~~~Rvr~ye~ll~ 308 (464)
|+.-=|-+.+|-||..|.+. |.+.| +.|+|- .++...|.-..|++.|++..+.+|+
T Consensus 3 V~vgGTFD~lH~GH~~lL~~----A~~~g---d~LiVgvt~D~~~~~~k~~~~~~e~R~~~v~~fl~ 62 (322)
T PRK01170 3 TVVGGTFSKLHKGHKALLKK----AIETG---DEVVIGLTSDEYVRKNKVYPIPYEDRKRKLENFIK 62 (322)
T ss_pred EEEccccccCChHHHHHHHH----HHHcC---CEEEEEEccHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 34444899999999999874 55664 333332 1222233222999999999999997
No 93
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=35.78 E-value=19 Score=32.84 Aligned_cols=19 Identities=5% Similarity=-0.150 Sum_probs=15.1
Q ss_pred ceeeEeceEEEecCCCcee
Q 012433 386 LNILPFKVAAYDKTQGKMA 404 (464)
Q Consensus 386 i~i~~f~~~~Yc~~c~~~~ 404 (464)
|.|...+..++|..|+...
T Consensus 62 L~i~~~p~~~~C~~CG~~~ 80 (135)
T PRK03824 62 IIFEEEEAVLKCRNCGNEW 80 (135)
T ss_pred EEEEecceEEECCCCCCEE
Confidence 6667777889999999655
No 94
>cd02789 MopB_CT_FmdC-FwdD The MopB_FmdC-FwdD CD includes the C-terminus of subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC) and subunit D of tungsten formylmethanofuran dehydrogenase (FwdD), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding superfamily of proteins. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=35.00 E-value=76 Score=27.22 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=28.9
Q ss_pred EEecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCc
Q 012433 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (464)
Q Consensus 138 ~L~v~~e~~~--~l~~g~~vaL~d~eG~~lAiL~V~e 172 (464)
++.++.++|+ +|+.||.|.|....|.+.+.+.+++
T Consensus 32 ~v~i~p~dA~~lgi~~Gd~V~v~~~~G~v~~~v~~~~ 68 (106)
T cd02789 32 YCEINPEDYKLLGKPEGDKVKVTSEFGEVVVFAKENE 68 (106)
T ss_pred EEEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECC
Confidence 4557777777 4689999999998999998888876
No 95
>cd02788 MopB_CT_NDH-1_NuoG2-N7 MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain, is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups
Probab=34.34 E-value=77 Score=26.54 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=28.2
Q ss_pred EecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCc
Q 012433 139 LAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIE 172 (464)
Q Consensus 139 L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~e 172 (464)
+.++.+++++ |+.||.|.|....|.+.+.+.+++
T Consensus 31 v~inp~dA~~lGi~~Gd~V~v~s~~G~i~~~v~v~~ 66 (96)
T cd02788 31 ARLSPADAARLGLADGDLVEFSLGDGTLTLPVQISK 66 (96)
T ss_pred EEECHHHHHHcCCCCCCEEEEEECCeEEEEEEEECC
Confidence 4577777775 589999999998899988888776
No 96
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=34.17 E-value=1.7e+02 Score=30.89 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=53.9
Q ss_pred CCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEE--Eecc--cCC-CCCCCCChHHHHHHHHHHHHcCCCCCCce
Q 012433 243 ADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILL--LHPL--GGY-TKADDVPLSWRMKQHEKVLEDGVLDPETT 317 (464)
Q Consensus 243 w~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Ll--l~Pl--vG~-tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~ 317 (464)
-.+|++.=+-+-+|.||..++++ |.+.| +-|. +||- +.. +.+-=.+.+-|++..+.+ ++ -+.+
T Consensus 11 ~~~v~~~G~FD~vH~GH~~~L~q----Ak~~g---~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~---~~--VD~V 78 (353)
T PTZ00308 11 TIRVWVDGCFDMLHFGHANALRQ----ARALG---DELFVGCHSDEEIMRNKGPPVMHQEERYEALRAC---KW--VDEV 78 (353)
T ss_pred cEEEEEEeecccCCHHHHHHHHH----HHHhC---CEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhc---CC--ccEE
Confidence 35677777899999999999875 44554 3233 3332 111 111256778888866643 11 1233
Q ss_pred EEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCC
Q 012433 318 VVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (464)
Q Consensus 318 ~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHA 356 (464)
++ .+|.....+ .| +-++|.++++|-|..
T Consensus 79 v~-~~p~~~~~~---------fI-~~l~~d~vv~GdD~~ 106 (353)
T PTZ00308 79 VE-GYPYTTRLE---------DL-ERLECDFVVHGDDIS 106 (353)
T ss_pred EE-CCCCCchHH---------HH-HHhCCCEEEECCCCC
Confidence 33 245432211 22 779999999999976
No 97
>cd02783 MopB_CT_2 The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=33.26 E-value=79 Score=29.05 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=28.8
Q ss_pred EecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCc
Q 012433 139 LAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIE 172 (464)
Q Consensus 139 L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~e 172 (464)
+.++.++|++ |+.||.|.|..+.|.+.+.+.+++
T Consensus 34 v~inp~dA~~~GI~dGd~V~v~s~~G~~~~~a~v~~ 69 (156)
T cd02783 34 LYMHPKTAKELGIKDGDWVWVESVNGRVKGQARFTE 69 (156)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeeEEEEEEECC
Confidence 5677777764 689999999999999999998877
No 98
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=32.68 E-value=1.1e+02 Score=29.07 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=38.2
Q ss_pred EEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEec----ccCC-CCCCCCChHHHHHHHHHHHHc
Q 012433 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP----LGGY-TKADDVPLSWRMKQHEKVLED 309 (464)
Q Consensus 246 VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~P----lvG~-tK~~Di~~~~Rvr~ye~ll~~ 309 (464)
+||.= |-.++|.||..|.. .|.+.| ..+.|-- ++.. .+..=.|+++|++-...++..
T Consensus 7 ~vavGGTFd~LH~GHk~LL~----~A~~~G---~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~ 69 (158)
T COG1019 7 KVAVGGTFDRLHDGHKKLLE----VAFEIG---DRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLES 69 (158)
T ss_pred EEEecccchhhhhhHHHHHH----HHHHhC---CeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHH
Confidence 45554 89999999999986 567776 3343321 1111 344457889999988888874
No 99
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=30.85 E-value=52 Score=27.59 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=27.7
Q ss_pred EEecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcc
Q 012433 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (464)
Q Consensus 138 ~L~v~~e~~~--~l~~g~~vaL~d~eG~~lAiL~V~ei 173 (464)
.+-++.++|+ +|+.||.|.|..+.|.+.+...+++-
T Consensus 31 ~v~inp~dA~~~Gi~~Gd~V~v~s~~G~v~~~v~~~~~ 68 (110)
T PF01568_consen 31 FVEINPEDAAKLGIKDGDWVRVSSPRGSVEVRVKVTDG 68 (110)
T ss_dssp EEEEEHHHHHHCT--TTCEEEEEETTEEEEEEEEEETT
T ss_pred EEEEcHHHHHHhcCcCCCEEEEEeccceEeeeeEEecC
Confidence 3446677766 46899999999999999999998873
No 100
>cd02776 MopB_CT_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. This CD (MopB_CT_Nitrate-R-NarG-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=30.81 E-value=88 Score=28.41 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=29.6
Q ss_pred EEecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcc
Q 012433 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (464)
Q Consensus 138 ~L~v~~e~~~--~l~~g~~vaL~d~eG~~lAiL~V~ei 173 (464)
.+-++.++++ +|+.||.|.+.+..|++.+...+++-
T Consensus 32 ~v~inp~dA~~lgI~dGd~V~v~~~~G~v~~~a~v~~~ 69 (141)
T cd02776 32 VVWMNPKDAAELGIKDNDWVEVFNDNGVVVARAKVSPR 69 (141)
T ss_pred EEEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECCC
Confidence 4567888877 56899999999988999988888763
No 101
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=30.80 E-value=95 Score=26.49 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=28.5
Q ss_pred EecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCcc
Q 012433 139 LAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEI 173 (464)
Q Consensus 139 L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~ei 173 (464)
+-++.+++++ |+.||.|.|.+..|.+.+.+.+++-
T Consensus 37 v~in~~dA~~lgi~~Gd~V~v~~~~G~~~~~v~~~~~ 73 (122)
T cd02791 37 VEIHPEDAARLGLKEGDLVRVTSRRGEVVLRVRVTDR 73 (122)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCC
Confidence 5577777775 5799999999989999888887664
No 102
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=30.73 E-value=1.2e+02 Score=25.88 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=29.3
Q ss_pred EEecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCccc
Q 012433 138 VLAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEIY 174 (464)
Q Consensus 138 ~L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~eiy 174 (464)
.+.++.++|++ |+.||.|.|....|.+.+...+++-.
T Consensus 31 ~v~i~p~dA~~~gi~~Gd~V~v~s~~G~i~~~v~v~~~v 69 (123)
T cd02778 31 TLWINPETAARLGIKDGDRVEVSSARGKVTGKARLTEGI 69 (123)
T ss_pred eEEECHHHHHHcCCCCCCEEEEEeCCCcEEEEEEEcCCc
Confidence 35567777664 68999999999899999888887743
No 103
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=29.97 E-value=73 Score=29.04 Aligned_cols=36 Identities=3% Similarity=-0.135 Sum_probs=28.8
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCccc
Q 012433 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIY 174 (464)
Q Consensus 139 L~v~~e~~~--~l~~g~~vaL~d~eG~~lAiL~V~eiy 174 (464)
+.++.++|+ .|+.||.|.|..+.|.+.+...|++--
T Consensus 40 v~InP~dA~~lGI~dGD~V~V~s~~G~i~~~a~vt~~i 77 (137)
T cd02784 40 ALVSPRTAEALGLLQGDVVRIRRGGRTIELPVWIQPGH 77 (137)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECCCc
Confidence 556666666 578999999999899999998887743
No 104
>cd02775 MopB_CT Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=29.82 E-value=83 Score=25.64 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=27.6
Q ss_pred EEecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCc
Q 012433 138 VLAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIE 172 (464)
Q Consensus 138 ~L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~e 172 (464)
.+-++.+++++ |+.||.|.|.+..|.+.+.+.+.+
T Consensus 24 ~v~~~~~da~~lgl~~Gd~v~v~~~~g~~~~~v~~~~ 60 (101)
T cd02775 24 VVEINPEDAAALGIKDGDLVRVESRRGSVVLRAKVTD 60 (101)
T ss_pred EEEECHHHHHHcCCCCCCEEEEEcCCcEEEEEEEECC
Confidence 34466766664 689999999999999988887766
No 105
>cd02780 MopB_CT_Tetrathionate_Arsenate-R This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of tetrathionate reductase, subunit A, (TtrA); respiratory arsenate As(V) reductase, catalytic subunit (ArrA); and other related proteins.
Probab=27.62 E-value=90 Score=27.90 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=29.8
Q ss_pred EEecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCccc
Q 012433 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIY 174 (464)
Q Consensus 138 ~L~v~~e~~~--~l~~g~~vaL~d~eG~~lAiL~V~eiy 174 (464)
.+.++.++|+ +|+.||.|.|.+..|.+.+.+.+++--
T Consensus 31 ~v~inp~dA~~lgI~~Gd~V~v~s~~G~i~~~v~i~~~i 69 (143)
T cd02780 31 PVWINPEDAAKLGIKTGDRVRVVTPGGSVVGKAKVTEGV 69 (143)
T ss_pred EEEECHHHHHHcCCCCCCEEEEEeCCceEEEEEEECCCc
Confidence 3456777777 468999999999999999999887743
No 106
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=26.99 E-value=93 Score=27.11 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=28.4
Q ss_pred EecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCcc
Q 012433 139 LAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEI 173 (464)
Q Consensus 139 L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~ei 173 (464)
+-++.++++. |+.||.|.|....|.+.+...+++-
T Consensus 36 v~i~p~dA~~lgi~~Gd~V~v~s~~g~i~~~v~i~~~ 72 (127)
T cd02777 36 VWINPLDAAARGIKDGDIVRVFNDRGAVLAGARVTDR 72 (127)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCC
Confidence 5567777665 5799999999989999988888764
No 107
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=26.99 E-value=37 Score=26.72 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=16.4
Q ss_pred HhcCCCCeEEEeCCCCcEEEE
Q 012433 147 RRIGESTRVALVDSDDNVVAI 167 (464)
Q Consensus 147 ~~l~~g~~vaL~d~eG~~lAi 167 (464)
+=|++|..+.+.--+|+++++
T Consensus 38 ~~L~e~~~v~v~~~~~~~i~v 58 (61)
T cd04470 38 KFLKEGMEVIVLFYNGEPIGV 58 (61)
T ss_pred hhCcCCCEEEEEEECCEEEEE
Confidence 347889988877658998886
No 108
>cd02782 MopB_CT_1 The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=26.28 E-value=1.6e+02 Score=25.65 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=30.2
Q ss_pred EecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCccccC
Q 012433 139 LAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEIYKH 176 (464)
Q Consensus 139 L~v~~e~~~~--l~~g~~vaL~d~eG~~lAiL~V~eiy~~ 176 (464)
+-++.++++. |+.||.|.|....|.+.+.+.+++--..
T Consensus 35 v~i~p~dA~~~gi~~Gd~V~v~s~~g~~~~~~~~~~~v~~ 74 (129)
T cd02782 35 LRIHPDDAAALGLADGDKVRVTSAAGSVEAEVEVTDDMMP 74 (129)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCCeEEEEEEECCCcCC
Confidence 4567777774 6899999999999999988888775443
No 109
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=25.94 E-value=91 Score=31.21 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=38.1
Q ss_pred EEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 012433 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTV 318 (464)
Q Consensus 246 VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~ 318 (464)
|-.|-.+|+-=|||-+.+..|++.+-|-|. +-=+++|.+||+ .||+++.+
T Consensus 54 V~~f~~~~~~RRGHVeFI~aAL~~M~efgv---------------------~kDL~~Y~~LLD--vFPKg~fv 103 (228)
T PF06239_consen 54 VDIFKQRDVRRRGHVEFIYAALKKMDEFGV---------------------EKDLEVYKALLD--VFPKGKFV 103 (228)
T ss_pred HHHHHhcCCCCcChHHHHHHHHHHHHHcCC---------------------cccHHHHHHHHH--hCCCCCcc
Confidence 556778898889999999877776666541 112589999999 99999765
No 110
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=25.90 E-value=95 Score=27.27 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=28.7
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcc
Q 012433 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (464)
Q Consensus 139 L~v~~e~~~--~l~~g~~vaL~d~eG~~lAiL~V~ei 173 (464)
+.++.++|+ +|+.||.|.|.+..|.+.+.+.+++-
T Consensus 35 v~i~p~dA~~~gi~~Gd~V~v~s~~G~~~~~~~~~~~ 71 (129)
T cd02793 35 IRINPADAAARGIADGDIVRVFNDRGACLAGAVVTDG 71 (129)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCC
Confidence 567777766 56899999999999999988888663
No 111
>PRK13599 putative peroxiredoxin; Provisional
Probab=25.07 E-value=3e+02 Score=26.76 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=54.2
Q ss_pred ceeEEEecCHHHHHhcCC---------CCeEEEeCCCCcEEEEEEeCccccCCHHHHHHHh--hCCCCCCChhHHHHHHh
Q 012433 134 SVPIVLAIDDEQKRRIGE---------STRVALVDSDDNVVAILNDIEIYKHPKEERIART--WGTTAPGLPYVDQAITY 202 (464)
Q Consensus 134 piPI~L~v~~e~~~~l~~---------g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~v--fGT~d~~HPgV~~~~~~ 202 (464)
++||+.|.+.+.++.+.. --.+-++|++|++..+.....-=..+-++-.+.+ ..++|.. +|+.
T Consensus 92 ~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~~~~--~~~~---- 165 (215)
T PRK13599 92 PFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQY--GVAL---- 165 (215)
T ss_pred ceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhhhhc--CCCc----
Confidence 679999988888777643 2456788999999998754432233333322222 3333322 3432
Q ss_pred cCCEEEe---eeEEEeccCCCCCCCCcccCCHHHHHHHHHh---CCCCeE
Q 012433 203 AGNWLIG---GDLEVLEPIKYHDGLDRFRLSPAQLRDEFSK---RNADAV 246 (464)
Q Consensus 203 ~g~~~vg---G~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~---~gw~~V 246 (464)
--+|--+ |+=.++.|+ .|..|.++.|.+ .|++.+
T Consensus 166 p~~w~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 205 (215)
T PRK13599 166 PEKWPNNYLIKDHVIVPPS----------TDEASANERKEKIKSKEIEAF 205 (215)
T ss_pred CCCCCCCCCCCCcEEEcCC----------CCHHHHHHhccccccCCcccc
Confidence 3345331 443344332 267777787764 466654
No 112
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=24.43 E-value=45 Score=29.95 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=26.1
Q ss_pred ceeeEeceEEEecCCCceee------cCCC-CCcceeecCHHHH
Q 012433 386 LNILPFKVAAYDKTQGKMAF------FDPS-RAKDFLFISGTKM 422 (464)
Q Consensus 386 i~i~~f~~~~Yc~~c~~~~~------~~ph-~~~~~~~iSGT~v 422 (464)
+.|...+..++|..|++... .||+ +.....-++|.++
T Consensus 62 l~Ie~~p~~~~C~~C~~~~~~e~~~~~CP~C~s~~~~i~~G~el 105 (115)
T COG0375 62 LHIEEEPAECWCLDCGQEVELEELDYRCPKCGSINLRIIGGDEL 105 (115)
T ss_pred EEEEEeccEEEeccCCCeecchhheeECCCCCCCceEEecCCee
Confidence 66667778999999988765 2997 5555555565443
No 113
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.38 E-value=71 Score=30.10 Aligned_cols=30 Identities=30% Similarity=0.549 Sum_probs=24.3
Q ss_pred eEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEE
Q 012433 136 PIVLAIDDEQKRRIGESTRVALVDSDDNVVAILN 169 (464)
Q Consensus 136 PI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~ 169 (464)
=.+++++++ |.+||+++.+|.+|+++|+=+
T Consensus 102 KfVi~~D~~----iR~~dEvlVVne~d~LlAvGr 131 (155)
T COG1370 102 KFVIDVDEE----IRAGDEVLVVNEDDELLAVGR 131 (155)
T ss_pred hheeccCcc----cCCCCeEEEECCCCcEEEeee
Confidence 457777664 788999999999999998744
No 114
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain. The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.
Probab=24.11 E-value=41 Score=25.41 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=17.2
Q ss_pred HHHhcCCCCeEEEeCCCCcEEEE
Q 012433 145 QKRRIGESTRVALVDSDDNVVAI 167 (464)
Q Consensus 145 ~~~~l~~g~~vaL~d~eG~~lAi 167 (464)
.++-|++|..|.+.--+|+++++
T Consensus 33 ~~~~l~eg~~v~v~~~~g~~i~~ 55 (55)
T cd04463 33 SFESFEPGEVVLVDTRTGQYVGV 55 (55)
T ss_pred HHhhCCCCCEEEEEEECCEEEeC
Confidence 45668999999876557887763
No 115
>PF12450 vWF_A: von Willebrand factor ; InterPro: IPR022156 This domain family is found in bacteria, and is approximately 100 amino acids in length. The family is found in association with PF00092 from PFAM. There are two conserved sequence motifs: STF and DVD. There are two completely conserved residues (E and N) that may be functionally important. In hemostasis, platelet adhesion to the damaged vessel wall is mediated by several proteins, including von Willebrand factor. In solution vWF becomes immobilized via its A3 domain on the fibrillar collagen of the vessel wall and acts as an intermediary between collagen and the platelet receptor glycoprotein Ibalpha (GPIbalpha), which is the only platelet receptor that does not require prior activation for bond formation.
Probab=24.04 E-value=70 Score=28.04 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=25.9
Q ss_pred cCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhhc
Q 012433 417 ISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYDS 451 (464)
Q Consensus 417 iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~~ 451 (464)
=|=+.+|++|.+|..||+.-.|.| +++.|++-
T Consensus 38 aSYs~vRr~L~~G~lPp~~aVR~E---E~iNyF~Y 69 (99)
T PF12450_consen 38 ASYSNVRRFLNQGQLPPPDAVRIE---EMINYFDY 69 (99)
T ss_pred ccHHHHHHHHHCCCCCCcCceeHH---HHhhcccC
Confidence 455679999999999999999976 67776543
No 116
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=23.99 E-value=77 Score=25.43 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=23.4
Q ss_pred eeEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEe
Q 012433 135 VPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILND 170 (464)
Q Consensus 135 iPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V 170 (464)
.|=+..++.+ ++.||.|.+.+++|+.+|+=..
T Consensus 21 ~~GV~~~~~~----f~~gd~V~i~~~~g~~ia~G~a 52 (74)
T PF01472_consen 21 APGVVEVDGD----FRKGDEVAIVDEDGEVIAVGRA 52 (74)
T ss_dssp GGGEEEEETT------TTSEEEEEETTSSEEEEEEE
T ss_pred hHHhEECCCC----cCCCCEEEEEcCCCeEEEEEEE
Confidence 3556666554 5789999999999999998664
No 117
>COG4118 Phd Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=23.87 E-value=92 Score=26.32 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.3
Q ss_pred HHHHhcCCCCeEEEeCCCCcEEEEEEe
Q 012433 144 EQKRRIGESTRVALVDSDDNVVAILND 170 (464)
Q Consensus 144 e~~~~l~~g~~vaL~d~eG~~lAiL~V 170 (464)
+.++.++.|++|.+.. .|+++|.|.-
T Consensus 16 ~lL~rV~aGEev~IT~-~G~PVArivp 41 (84)
T COG4118 16 ELLRRVRAGEEVIITK-RGRPVARLVP 41 (84)
T ss_pred HHHHHHhCCCEEEEee-CCeEEEEEee
Confidence 4566789999999997 8999999983
No 118
>PRK13760 putative RNA-associated protein; Provisional
Probab=23.71 E-value=47 Score=33.23 Aligned_cols=58 Identities=26% Similarity=0.449 Sum_probs=40.8
Q ss_pred EEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccC----C--HHHHHHHhhCCCCCCChhHHHHHHhcC
Q 012433 138 VLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKH----P--KEERIARTWGTTAPGLPYVDQAITYAG 204 (464)
Q Consensus 138 ~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~----D--k~~ea~~vfGT~d~~HPgV~~~~~~~g 204 (464)
...|+.+.+.+.+.|..+-|-+ +|.+++||.. + ++++..++|||+|. --|...+...|
T Consensus 20 EI~v~p~~v~~~R~g~~~~l~e-------Vl~~~~VF~n~~kG~~As~~~L~~~FGT~d~--~~i~~~IL~kG 83 (231)
T PRK13760 20 EILVDPDLALKFKEGKDVDIED-------VLAVEEVFKDAKKGDKASEESLKKVFGTTDP--LEIAEEIIKKG 83 (231)
T ss_pred EEEECHHHHHHHHCCCCCCHHH-------HhccceEEecCccCCcCCHHHHHHHhCCCCH--HHHHHHHHhcC
Confidence 4556788888888888777754 5667778877 2 36788899999983 34444443444
No 119
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=23.61 E-value=6.4e+02 Score=25.00 Aligned_cols=74 Identities=19% Similarity=0.108 Sum_probs=51.5
Q ss_pred HHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEE-EecCCCcccCChhHHHHHHHHHHHcCCc
Q 012433 269 RLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVV-SIFPSPMHYAGPTEVQWHAKARINAGAN 347 (464)
Q Consensus 269 ~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l-~~lp~~MryAGPREAllHAiiRkNyGcT 347 (464)
.+++.| .+++++.=-.|+- --+..+-|.+-.+.+.+ ....+..++ .+-.. ..+|++-.|...+..|++
T Consensus 29 ~l~~~G--v~gl~v~GstGE~--~~lt~~Er~~l~~~~~~--~~~~~~~vi~gv~~~-----~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 29 FQIENG--TDGLVVCGTTGES--PTLSDEEHEAVIEAVVE--AVNGRVPVIAGTGSN-----NTAEAIELTKRAEKAGAD 97 (284)
T ss_pred HHHHcC--CCEEEECCCCcch--hhCCHHHHHHHHHHHHH--HhCCCCcEEeccCCc-----cHHHHHHHHHHHHHcCCC
Confidence 455666 5678877444433 35788899999998888 334333333 33222 468999999999999999
Q ss_pred eeeecC
Q 012433 348 FYIVGR 353 (464)
Q Consensus 348 HfIVGR 353 (464)
.+++..
T Consensus 98 ~v~~~~ 103 (284)
T cd00950 98 AALVVT 103 (284)
T ss_pred EEEEcc
Confidence 999974
No 120
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=23.55 E-value=74 Score=27.48 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=14.5
Q ss_pred HHHHhcCCCCcEEEecccCCC
Q 012433 269 RLLEMGYQNPILLLHPLGGYT 289 (464)
Q Consensus 269 ~ale~g~~~~~Lll~PlvG~t 289 (464)
.|+|.. .++.||||..|..
T Consensus 71 ~al~~~--G~G~LvHP~~G~~ 89 (93)
T PF07157_consen 71 AALEAP--GPGELVHPWFGSM 89 (93)
T ss_pred HHHcCC--CCeEEecCCCceE
Confidence 566653 5899999999954
No 121
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=23.05 E-value=93 Score=24.29 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.8
Q ss_pred cCCCCeEEEeCCCCcEEEEEE
Q 012433 149 IGESTRVALVDSDDNVVAILN 169 (464)
Q Consensus 149 l~~g~~vaL~d~eG~~lAiL~ 169 (464)
+++|+.|++.|.+|+.+|+-.
T Consensus 31 ~~~g~~V~v~~~~g~~vg~G~ 51 (77)
T smart00359 31 IKEGDVVVIVDEKGEPLGIGL 51 (77)
T ss_pred cCCCCEEEEEcCCCCEEEEEE
Confidence 678999999998999999875
No 122
>PRK04980 hypothetical protein; Provisional
Probab=22.71 E-value=85 Score=27.63 Aligned_cols=30 Identities=7% Similarity=0.090 Sum_probs=26.6
Q ss_pred HhcCCCCeEEE-eCCCCcEEEEEEeCccccC
Q 012433 147 RRIGESTRVAL-VDSDDNVVAILNDIEIYKH 176 (464)
Q Consensus 147 ~~l~~g~~vaL-~d~eG~~lAiL~V~eiy~~ 176 (464)
...++|+.+.+ ++.+|++++.+.|.++-..
T Consensus 30 ~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i 60 (102)
T PRK04980 30 SHFKPGDVLRVGTFEDDRYFCTIEVLSVSPV 60 (102)
T ss_pred cCCCCCCEEEEEECCCCcEEEEEEEEEEEEE
Confidence 45789999999 8888999999999998866
Done!