Query 012433
Match_columns 464
No_of_seqs 158 out of 613
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:21:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x6v_B Bifunctional 3'-phospho 100.0 6E-134 2E-138 1092.5 43.5 398 54-455 225-624 (630)
2 1r6x_A ATP:sulfate adenylyltra 100.0 3E-134 9E-139 1041.7 35.4 388 55-457 2-395 (395)
3 1g8f_A Sulfate adenylyltransfe 100.0 2E-126 6E-131 1014.1 36.9 385 53-452 1-391 (511)
4 1jhd_A Sulfate adenylyltransfe 100.0 2E-119 7E-124 932.6 29.9 382 53-453 1-395 (396)
5 1m8p_A Sulfate adenylyltransfe 100.0 3E-118 1E-122 962.2 33.7 384 53-451 2-391 (573)
6 3cr8_A Sulfate adenylyltranfer 100.0 2E-116 8E-121 944.1 29.1 360 51-451 3-364 (552)
7 2gks_A Bifunctional SAT/APS ki 100.0 7E-116 2E-120 938.9 32.2 363 76-451 2-367 (546)
8 1v47_A ATP sulfurylase; produc 100.0 2E-112 7E-117 868.4 34.6 343 79-448 3-348 (349)
9 1od6_A PPAT, phosphopantethein 98.6 4E-07 1.4E-11 81.3 12.9 153 247-450 4-159 (160)
10 1qjc_A Phosphopantetheine aden 98.5 3.1E-06 1E-10 75.2 16.5 151 247-449 5-157 (158)
11 1ej2_A Nicotinamide mononucleo 98.3 8.9E-06 3E-10 74.7 14.7 151 246-448 6-160 (181)
12 1kam_A Deamido-NAD(+), nicotin 98.2 2.3E-05 8E-10 72.4 15.1 170 246-447 10-188 (194)
13 1k4m_A NAMN adenylyltransferas 98.2 2E-05 6.7E-10 74.1 13.6 177 247-448 7-209 (213)
14 1o6b_A Phosphopantetheine aden 98.1 5E-05 1.7E-09 68.5 14.9 152 246-448 5-157 (169)
15 2qtr_A Nicotinate (nicotinamid 98.1 1E-05 3.6E-10 73.9 10.2 166 248-447 7-183 (189)
16 3k9w_A Phosphopantetheine aden 98.0 0.00014 4.7E-09 68.1 14.8 157 244-452 23-181 (187)
17 3f3m_A Phosphopantetheine aden 98.0 0.00011 3.6E-09 67.6 13.6 153 245-450 4-160 (168)
18 4f3r_A Phosphopantetheine aden 97.8 6.1E-05 2.1E-09 68.8 9.5 151 246-449 7-160 (162)
19 1f9a_A Hypothetical protein MJ 97.8 0.00024 8E-09 64.3 12.7 144 250-448 7-154 (168)
20 3nv7_A Phosphopantetheine aden 97.7 0.00013 4.4E-09 66.4 9.5 145 251-447 10-156 (157)
21 1vlh_A Phosphopantetheine aden 97.7 0.00056 1.9E-08 62.5 13.3 146 251-450 20-169 (173)
22 3nd5_A Phosphopantetheine aden 97.6 0.00042 1.4E-08 63.8 10.9 144 251-448 10-158 (171)
23 1yum_A 'probable nicotinate-nu 97.5 0.0013 4.6E-08 63.3 14.6 172 244-447 23-226 (242)
24 3h05_A Uncharacterized protein 97.5 0.00019 6.4E-09 66.3 7.4 156 245-447 3-166 (177)
25 3nbk_A Phosphopantetheine aden 97.4 0.0024 8.1E-08 59.3 14.0 151 246-449 24-176 (177)
26 2x0k_A Riboflavin biosynthesis 97.2 0.00098 3.3E-08 67.6 9.8 161 245-450 17-188 (338)
27 2qjt_B Nicotinamide-nucleotide 97.2 0.0039 1.3E-07 61.7 13.8 157 246-451 9-179 (352)
28 2qjo_A Bifunctional NMN adenyl 97.2 0.0011 3.6E-08 65.2 9.3 152 247-449 11-172 (341)
29 2h29_A Probable nicotinate-nuc 97.1 0.004 1.4E-07 57.1 12.2 168 250-448 9-184 (189)
30 1nup_A FKSG76; NAD biosynthesi 97.1 0.0036 1.2E-07 60.4 11.8 189 251-458 14-242 (252)
31 2b7l_A Glycerol-3-phosphate cy 96.8 0.0072 2.5E-07 52.0 10.1 89 245-356 3-96 (132)
32 3gmi_A UPF0348 protein MJ0951; 96.5 0.0093 3.2E-07 61.0 10.0 178 243-450 52-261 (357)
33 1kqn_A Nmnat, nicotinamide mon 96.5 0.0096 3.3E-07 58.6 9.8 187 250-458 15-263 (279)
34 1mrz_A Riboflavin kinase/FMN a 96.4 0.026 9E-07 56.0 12.1 151 246-450 2-161 (293)
35 1lw7_A Transcriptional regulat 96.1 0.01 3.5E-07 59.5 7.7 87 251-348 10-113 (365)
36 3glv_A Lipopolysaccharide core 95.8 0.037 1.2E-06 48.7 8.9 132 244-430 3-139 (143)
37 1coz_A Protein (glycerol-3-pho 95.1 0.18 6.2E-06 42.8 10.8 89 245-356 3-96 (129)
38 3op1_A Macrolide-efflux protei 94.8 0.13 4.4E-06 51.5 10.3 101 244-356 21-133 (308)
39 3do8_A Phosphopantetheine aden 81.8 1.3 4.5E-05 39.3 4.4 53 251-309 8-65 (148)
40 3n8h_A Pantothenate synthetase 81.4 0.99 3.4E-05 44.3 3.7 41 227-267 6-47 (264)
41 3uk2_A Pantothenate synthetase 71.5 0.68 2.3E-05 45.9 -0.5 62 227-296 7-70 (283)
42 3elb_A Ethanolamine-phosphate 63.1 24 0.00084 35.5 8.9 90 244-357 8-103 (341)
43 2ejc_A Pantoate--beta-alanine 51.2 28 0.00096 34.2 6.8 40 228-267 4-45 (280)
44 3ag6_A Pantothenate synthetase 49.2 36 0.0012 33.5 7.2 39 228-266 5-45 (283)
45 3inn_A Pantothenate synthetase 46.8 22 0.00076 35.6 5.3 63 227-297 24-92 (314)
46 3v67_A Sensor protein CPXA; PA 45.0 8.4 0.00029 34.0 1.7 56 151-215 54-111 (138)
47 2l9z_A PR domain zinc finger p 44.3 7.6 0.00026 27.4 1.1 22 394-415 11-34 (39)
48 3q12_A Pantoate--beta-alanine 41.9 27 0.00092 34.6 5.0 40 227-266 6-47 (287)
49 3elb_A Ethanolamine-phosphate 38.5 56 0.0019 32.9 6.8 90 246-358 201-299 (341)
50 2kdx_A HYPA, hydrogenase/ureas 37.7 8.2 0.00028 32.8 0.5 38 385-422 64-109 (119)
51 1v8f_A Pantoate-beta-alanine l 35.5 32 0.0011 33.8 4.3 36 228-267 4-40 (276)
52 3mxt_A Pantothenate synthetase 34.6 35 0.0012 33.8 4.4 64 227-296 6-72 (285)
53 3hl4_A Choline-phosphate cytid 30.7 38 0.0013 32.5 3.9 106 227-354 60-171 (236)
54 1xvq_A Thiol peroxidase; thior 27.5 1.1E+02 0.0038 26.2 6.2 57 134-190 100-168 (175)
55 3a43_A HYPD, hydrogenase nicke 26.9 16 0.00054 32.1 0.5 19 385-403 61-79 (139)
56 3gl3_A Putative thiol:disulfid 23.2 1.5E+02 0.005 24.0 5.9 62 134-195 86-150 (152)
No 1
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=100.00 E-value=6.4e-134 Score=1092.52 Aligned_cols=398 Identities=59% Similarity=1.034 Sum_probs=382.8
Q ss_pred cCCCCCc--eeecccCchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCee
Q 012433 54 IEPDGGK--LTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVV 131 (464)
Q Consensus 54 i~PhGg~--Lv~l~v~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~ 131 (464)
+.||||+ |++|+|+++++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||..+
T Consensus 225 ~ip~G~~~~l~~l~v~~~~~~~~~~~a~~l~~i~l~~~~~~dlell~~G~fsPL~GfM~~~dy~~v~--~~~~l~~g~~~ 302 (630)
T 1x6v_B 225 IVPVDASYEVKELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCL--HFDCLLDGGVI 302 (630)
T ss_dssp SSCCCCCCSCCCCBCCGGGHHHHHHHHHTSCEEECCHHHHHHHHHHHHTTTTTCCSSCCHHHHHHHH--HHSEECTTSCE
T ss_pred cccccCcccceecccChHHHHHHHHhhccCCEEEECHHHHHHHHHHhcCCccCchhhCCHHHHHHHH--HhCEeCCCCee
Confidence 5799966 9999999999999999999999999999999999999999999999999999999999 59999997422
Q ss_pred ecceeEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeee
Q 012433 132 NMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGD 211 (464)
Q Consensus 132 pwpiPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~ 211 (464)
+|||||||+|+++++++|++|++|+| +.+|+++|+|+|+|+|++||++||++||||+|++||||+.++ ++|+|+|||+
T Consensus 303 ~~~iPi~L~v~~~~~~~l~~g~~v~L-~~~g~~~a~l~v~e~~~~dk~~~a~~v~gt~d~~HPgv~~~~-~~g~~~vgG~ 380 (630)
T 1x6v_B 303 NLSVPIVLTATHEDKERLDGCTAFAL-MYEGRRVAILRNPEFFEHRKEERCARQWGTTCKNHPYIKMVM-EQGDWLIGGD 380 (630)
T ss_dssp ECCSCCCEEECHHHHHHHTTCSEEEE-EETTEEEEEEEEEEEEECCHHHHHHHHHSCCCTTSHHHHHHH-HSCSEEEEEE
T ss_pred eeeeEEEEeCCHHHHhhCCCCCEEEE-ccCCeEEEEEEeeEEEecCHHHHHHHHhCCCCCCCcchHHHH-hCCCEEEEeE
Confidence 47999999999999999999999999 579999999999999999999999999999999999999976 4699999999
Q ss_pred EEEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCC
Q 012433 212 LEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKA 291 (464)
Q Consensus 212 v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~ 291 (464)
|+++++|.|+|+|++||+||+|+|+.|+++||++|||||||||+|||||+|||.|++.+.+.|+++++||||||||+||+
T Consensus 381 i~~l~~~~~~~~~~~~~~tP~e~r~~f~~~gw~~VvafqtrNP~HraHe~l~~~a~~~~~d~g~~~~~lll~pl~G~tk~ 460 (630)
T 1x6v_B 381 LQVLDRVYWNDGLDQYRLTPTELKQKFKDMNADAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTKD 460 (630)
T ss_dssp EEECSCCCCCSSCGGGCCCHHHHHHHHHHTTCSEEEEEEESSCCCHHHHHHHHHHHHHHHHHTCSSEEEEEEEBCSCCCT
T ss_pred EEEEecCcccccchhhcCCHHHHHHHHHHcCCCeEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCcEEEEeCcCCCCC
Confidence 99999999888899999999999999999999999999999999999999999988777788899999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCc
Q 012433 292 DDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDAD 371 (464)
Q Consensus 292 ~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~ 371 (464)
||||+++||+||++++++||||+++++|++||++||||||||||||||||||||||||||||||||||+++++.+|||+|
T Consensus 461 ~di~~~~r~~~~~~~~~~~y~p~~~~~l~~~p~~mryaGPrEa~~hai~rkN~Gcth~IVGrdhAG~g~~~~~~~~Y~~~ 540 (630)
T 1x6v_B 461 DDVPLMWRMKQHAAVLEEGVLNPETTVVAIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPAGMPHPETGKDLYEPS 540 (630)
T ss_dssp TSCCHHHHHHHHHHHHHTTSSCGGGEEECCBCCCCCCCHHHHHHHHHHHHHHTTCSEEEECSSTTCCBCTTTCSBSSCTT
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCcceEEeeccchhhhcCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCCCCccccCCcc
Confidence 99999999999999999779999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhCCCCCcceeeEeceEEEecCCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhhc
Q 012433 372 HGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYDS 451 (464)
Q Consensus 372 ~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~~ 451 (464)
+||+||++++++.+|+|++|+++|||++|++|++..||+++++++||||+||+||++|+.||+||||||||++|++||++
T Consensus 541 ~aq~i~~~~~~~l~i~~~~~~~~~Y~~~~~~~~~~~p~~~~~~~~isgt~~R~~l~~G~~pP~~f~rpev~~~l~~~~~~ 620 (630)
T 1x6v_B 541 HGAKVLTMAPGLITLEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLTEYYKS 620 (630)
T ss_dssp HHHHHHHHCTTCTTCEEEECCCEEEETTTTEEEECCSTTGGGEECCCHHHHHHHHHTTCCCCTTSSCHHHHHHHHHHHHH
T ss_pred hHHHHHhcCcccCCceEEEcceeEEEcccCceeccCCCCCceeeecCHHHHHHHHHCCCCCCcccCcHHHHHHHHHhccC
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 012433 452 LTPA 455 (464)
Q Consensus 452 ~~~~ 455 (464)
+.+.
T Consensus 621 ~~~~ 624 (630)
T 1x6v_B 621 LEKA 624 (630)
T ss_dssp HCC-
T ss_pred cccc
Confidence 8753
No 2
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=100.00 E-value=2.7e-134 Score=1041.68 Aligned_cols=388 Identities=30% Similarity=0.474 Sum_probs=362.2
Q ss_pred CCCCCceeecccCch-hHHHHHHHhcc--CCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCee
Q 012433 55 EPDGGKLTELIVDKS-LRDVRKREAAT--LPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVV 131 (464)
Q Consensus 55 ~PhGg~Lv~l~v~~~-~~~~l~~ea~~--lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~ 131 (464)
.||||+|+||+|+++ ++++++++|.+ ||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 2 ~phgg~l~~l~v~~~~~~~~~~~~a~~~~lp~i~l~~~~l~dlell~~G~fsPL~GFM~~~dy~~V~--~~~rL~dG~~- 78 (395)
T 1r6x_A 2 APHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVV--TDSRLADGTL- 78 (395)
T ss_dssp CCTTSSCCBHHHHTGGGHHHHHHHHTCTTSEEEECCHHHHHHHHHHHBTTTTTCCEECCHHHHHHHH--HHSBCTTSCB-
T ss_pred cCCCccccccccCchHHhHHHHHHhhcCCCCeEEcCHHHHHHHHHHhcCCccCCcccCCHHHHHHHH--HhCcCCCCCC-
Confidence 599999999999865 45669999999 99999999999999999999999999999999999999 6999999997
Q ss_pred ecceeEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeee
Q 012433 132 NMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGD 211 (464)
Q Consensus 132 pwpiPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~ 211 (464)
|||||||+|+++++++|++|++|+|+|.+|+++|+|+|+|+|++||++||++||| +|++||||++++.+.|+|+|||+
T Consensus 79 -wpiPI~L~v~~e~~~~l~~g~~vaL~~~~g~~~ail~v~e~y~~dk~~~a~~vfg-~d~~HPgV~~~~~~~g~~~vgG~ 156 (395)
T 1r6x_A 79 -WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQDVYKPNKTIEAEKVFR-GDPEHPAISYLFNVAGDYYVGGS 156 (395)
T ss_dssp -CCSCCCEEECHHHHHTCCTTCEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHC-SCTTSHHHHHHHHTSCSEEEEEE
T ss_pred -cceEEEEeCCHHHHhhcCCCCEEEEEcCCCceEEEEEeeeeeccChHHHHHHHhC-CCcCCccHHHHHhhcCCEEEEEE
Confidence 6999999999999999999999999989999999999999999999999999999 99999999998765699999999
Q ss_pred EEEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhh-HHHHHHHHHHHHHhcCCCCcEEEecccCCCC
Q 012433 212 LEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGH-ALLMTDTRRRLLEMGYQNPILLLHPLGGYTK 290 (464)
Q Consensus 212 v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaH-e~l~k~~~~~ale~g~~~~~Lll~PlvG~tK 290 (464)
|+++++|.|+ +|++||+||+|+|+.|+++||++|||||||||+|||| |+++| +|+|. +++||||||+|+||
T Consensus 157 v~~l~~~~~~-df~~~r~tP~e~R~~f~~~gw~~VvafqtrNP~HraH~e~~~r----~a~e~---~~~lllhPlvG~tK 228 (395)
T 1r6x_A 157 LEAIQLPQHY-DYPGLRKTPAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVR----AAREA---NAKVLIHPVVGLTK 228 (395)
T ss_dssp EEESCCCCCC-SSTTCSCCHHHHHHHHHHTTCCCEEEECCSSCCCHHHHHHHHH----HHHHT---TCEEEECCBCSBCC
T ss_pred EEEEecCCcC-CchhhcCCHHHHHHHHHhcCCCcEEEeccCCCcchhhHHHHHH----HHHHc---CCcEEEEECCCCCC
Confidence 9999998887 6999999999999999999999999999999999999 66665 46676 48999999999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCC
Q 012433 291 ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDA 370 (464)
Q Consensus 291 ~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~ 370 (464)
+||+|+++||+||+++++ +| |+++++|++||++||||||||||||||+|||||||||||||||||||+++++.+||++
T Consensus 229 ~~Dip~~vR~~~~~~~l~-~y-p~~~v~l~~~p~~mryAGPrEai~HAiiRkN~GcthfIVGRDhAG~g~~~~~~d~Y~~ 306 (395)
T 1r6x_A 229 PGDIDHHTRVRVYQEIIK-RY-PNGIAFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHAGPGKNSKGVDFYGP 306 (395)
T ss_dssp TTCCCHHHHHHHHHHHGG-GS-STTCEEECCBCCBCCCCHHHHHHHHHHHHHHTTCSEEEECTTTTCCCBCTTSCBSSCT
T ss_pred CCCCCHHHHHHHHHHHHH-hC-CCccEEEEecchhhhhcCcHHHHHHHHHHHHcCCceEEECCCCCCCCCCCcccccCCc
Confidence 999999999999999999 45 9999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHhhhCCCCCcceeeEeceEEEecCCCceeec--CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 371 DHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFF--DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 371 ~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~--~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
|+||+||++++++.+|+|++|++++||++|++|++. |||+++++++||||+||+||++|+.||+|||||||+++|+++
T Consensus 307 ~~aq~i~~~~~~el~I~~v~f~~~~Y~~~~~~~~~~~~~p~~~~~~~~iSGT~~R~~L~~G~~pP~~f~rpeV~~iL~~~ 386 (395)
T 1r6x_A 307 YDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRES 386 (395)
T ss_dssp THHHHHHHHHHHHHTCEEEECCCEEEEGGGTEEEETTTSCSSSCCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHTTC
T ss_pred chHHHHHHhchhccCceEEEecceEEecccCeEEEcccCCCCccceEccCHHHHHHHHHCcCCCCcccCCHHHHHHHHHh
Confidence 999999999877778999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred hhccCCCCC
Q 012433 449 YDSLTPADN 457 (464)
Q Consensus 449 ~~~~~~~~~ 457 (464)
|++..+||.
T Consensus 387 ~~~r~~qg~ 395 (395)
T 1r6x_A 387 NPPRPKGSS 395 (395)
T ss_dssp ---------
T ss_pred cCChhhcCC
Confidence 999888763
No 3
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=100.00 E-value=1.7e-126 Score=1014.07 Aligned_cols=385 Identities=30% Similarity=0.478 Sum_probs=365.4
Q ss_pred ccCCCCCceeecccCch-hHHHHHHHhcc--CCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCC
Q 012433 53 LIEPDGGKLTELIVDKS-LRDVRKREAAT--LPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGS 129 (464)
Q Consensus 53 li~PhGg~Lv~l~v~~~-~~~~l~~ea~~--lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~ 129 (464)
|+.||||+|+||+|+++ ++++++++|.+ ||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||+
T Consensus 1 ~~~phgg~l~~~~~~~~~~~~~~~~~a~~~~lp~i~l~~~~~~dlell~~G~fsPL~GfM~~~d~~~v~--~~~rl~~G~ 78 (511)
T 1g8f_A 1 MPAPHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVV--TDSRLADGT 78 (511)
T ss_dssp -CCCTTSSCCCHHHHTGGGHHHHHHHHTCTTSEEEECCHHHHHHHHHHHTTTTTTCCEECCHHHHHHHH--HHSBCTTCC
T ss_pred CCCCCCCeeeccccCchhhhHHHHHHhhcCCCCeEEcCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCC
Confidence 57899999999998665 55669999999 99999999999999999999999999999999999999 699999999
Q ss_pred eeecceeEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEe
Q 012433 130 VVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIG 209 (464)
Q Consensus 130 ~~pwpiPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vg 209 (464)
+ |||||||+|+++++++|++|++|+|+|.+|+++|+|+|+|+|++||++||++||| +|++||||++++.+.|+|+||
T Consensus 79 ~--w~iPi~L~v~~~~~~~l~~g~~v~L~~~~g~~~a~l~v~e~~~~dk~~~~~~v~g-~d~~HPgv~~~~~~~g~~~v~ 155 (511)
T 1g8f_A 79 L--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQDVYKPNKTIEAERVFR-GDPEHPAISYLFNVAGDYYVG 155 (511)
T ss_dssp B--CCSCCCEEECHHHHTTCCTTCEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHC-SCTTSHHHHHHHHTSCSEEEE
T ss_pred C--cceeEEEeCCHHHHhhccCCCEEEEECCCCceEEEEEeeeeeccChHHHHHHHhC-CCcCCccHHHHHhhCCCEEEE
Confidence 7 6999999999999999999999999988999999999999999999999999999 999999999987556999999
Q ss_pred eeEEEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhh-HHHHHHHHHHHHHhcCCCCcEEEecccCC
Q 012433 210 GDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGH-ALLMTDTRRRLLEMGYQNPILLLHPLGGY 288 (464)
Q Consensus 210 G~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaH-e~l~k~~~~~ale~g~~~~~Lll~PlvG~ 288 (464)
|+|+++++|.|+ +|++||+||+|+|+.|+++||++|||||||||+|||| |+++| +|+|. +++||||||+|+
T Consensus 156 G~v~~l~~~~~~-~~~~~~~tP~e~r~~f~~~gw~~v~afqtrnP~HraH~e~~~~----~a~e~---~~~lll~pl~g~ 227 (511)
T 1g8f_A 156 GSLEAIQLPQHY-DYPGLRKTPAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVR----AAREA---NAKVLIHPVVGL 227 (511)
T ss_dssp EEEEESCCCCCC-SCTTTCCCHHHHHHHHHHTTCCCEEEEEESSCCCHHHHHHHHH----HHHHH---TCEEEEEEBCSB
T ss_pred EEEEEEecCCcC-CchhhcCCHHHHHHHHHHcCCCcEEEEecCCCCchHHHHHHHH----HHHHc---CCcEEEEECCCC
Confidence 999999998887 6999999999999999999999999999999999999 67765 46676 489999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCC
Q 012433 289 TKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLY 368 (464)
Q Consensus 289 tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y 368 (464)
||+||+|+++||+||+++++ +| |+++++|+++|++|||||||||+||||+|||||||||||||||||||+++++.+||
T Consensus 228 ~k~~di~~~~r~~~~~~~~~-~y-p~~~~~l~~~p~~m~yaGprea~~hai~r~n~G~th~IvGrdhAg~g~~~~~~~~Y 305 (511)
T 1g8f_A 228 TKPGDIDHHTRVRVYQEIIK-RY-PNGIAFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHAGPGKNSKGVDFY 305 (511)
T ss_dssp CSTTCCCHHHHHHHHHHHGG-GS-CTTSEEECCBCCBCCCCHHHHHHHHHHHHHHTTCSEEECCTTTTCCCBCTTSCBSS
T ss_pred CCCCCCCHHHHHHHHHHHHH-hC-CcccEEEEecchhhhccCcHHHHHHHHHHHhCCCceEEeCCCCCCCCCCCcccccC
Confidence 99999999999999999999 45 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHhhhCCCCCcceeeEeceEEEecCCCceeec--CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHH
Q 012433 369 DADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFF--DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLV 446 (464)
Q Consensus 369 ~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~--~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~ 446 (464)
++|+||+||++++++.+|++++|++++||++|++|++. |||+++++++||||+||+||++|+.||+|||||||+++|+
T Consensus 306 ~~~~aq~i~~~~~~~l~i~pv~fd~~~y~~~~g~~i~~d~~p~~~~~~~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vLr 385 (511)
T 1g8f_A 306 GPYDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILR 385 (511)
T ss_dssp CTTHHHHHHHHTHHHHCSEEECCCCEEEEGGGTEEEEGGGCSSSCCCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHH
T ss_pred CcchHHHHHHhCccccCceEEeecceeEecccCeEEEcccCCCCcccccccCHHHHHHHHhCCCCCCccccChhhHHHHH
Confidence 99999999999977778999999999999999999986 9999999999999999999999999999999999999999
Q ss_pred HHhhcc
Q 012433 447 EYYDSL 452 (464)
Q Consensus 447 ~~~~~~ 452 (464)
++|++.
T Consensus 386 ~~~~~~ 391 (511)
T 1g8f_A 386 ESNPPR 391 (511)
T ss_dssp HHSCCG
T ss_pred Hhcccc
Confidence 999653
No 4
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=100.00 E-value=2.1e-119 Score=932.60 Aligned_cols=382 Identities=27% Similarity=0.427 Sum_probs=362.5
Q ss_pred ccCCCCCceeeccc--CchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCe
Q 012433 53 LIEPDGGKLTELIV--DKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSV 130 (464)
Q Consensus 53 li~PhGg~Lv~l~v--~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~ 130 (464)
++.||||+|+||+| +++++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 1 ~~~phgg~l~~~~~~~~~~~~~~~~~~a~~lp~i~l~~~~~~dlell~~G~fsPL~GFM~~~d~~~v~--~~~rl~~G~~ 78 (396)
T 1jhd_A 1 MIKPVGSDELKPLFVYDPEEHHKLSHEAESLPSVVISSQAAGNAVMMGAGYFSPLQGFMNVADAMGAA--EKMTLSDGSF 78 (396)
T ss_dssp CCCCTTSSSCCCCBCCSHHHHHHHHHHHTTSCEEECCHHHHHHHHHHHTTTTTTCCEECCHHHHHHHH--HHSBCTTSCB
T ss_pred CCCCCCCeeeccccCCChHHHHHHHHHhccCCeEecCHHHHHHHHHHhcCCccCCcccCCHHHHHHHH--HhCcCCCCCC
Confidence 46899999999999 9999999999999999999999999999999999999999999999999999 6999999998
Q ss_pred eecceeEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccCCHHHHHH------HhhCCCCCCChhHHHHHHhcC
Q 012433 131 VNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIA------RTWGTTAPGLPYVDQAITYAG 204 (464)
Q Consensus 131 ~pwpiPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~------~vfGT~d~~HPgV~~~~~~~g 204 (464)
|||||||+|++ +++|++|++|+|+|.+|+++|+|+|+|+|++||++||+ +||||+|++||||++++ ++|
T Consensus 79 --wpiPi~L~v~~--~~~l~~g~~v~L~d~~g~~~a~l~v~e~~~~dk~~~a~~~~~~~~v~gt~d~~HPgv~~~~-~~g 153 (396)
T 1jhd_A 79 --FPVPVLCLLEN--TDAIGDAKRIALRDPNVEGNPVLAVMDIEAIEEVSDEQMAVMTDKVYRTTDMDHIGVKTFN-SQG 153 (396)
T ss_dssp --CCSCCCCEESC--STTTTTCSEEEEECTTSTTCCEEEEEECCEEEECCHHHHHHHHHHHHSCCCTTSHHHHHHT-TSC
T ss_pred --ccEEEEEecch--hhhCCCCCEEEEECCCCceEEEEEeeeeeccChHHHhhhhcccccEECCCCCCCcchHHHh-hcC
Confidence 59999999987 78999999999999999999999999999999999999 99999999999999875 689
Q ss_pred CEEEeeeEEEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEec
Q 012433 205 NWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP 284 (464)
Q Consensus 205 ~~~vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~P 284 (464)
+|+|||+|++++++.|+++|++||+||+|+|+.|+++||++|||||||||+||||++|++.|+ +.. ..++|||||
T Consensus 154 ~~~vgG~v~~l~~~~~~~~~~~~~~tP~e~R~~f~~~gw~~VvafqTrNPiHrgH~~l~~~Al----e~~-~~D~vll~P 228 (396)
T 1jhd_A 154 RVAVSGPIQVLNFSYFQADFPDTFRTAVEIRNEIKEHGWSKVVAFQTRNPMHRAHEELCRMAM----ESL-DADGVVVHM 228 (396)
T ss_dssp SEEEEEEEEECCCHHHHHHCTTTBCCHHHHHHHHHHHTCSSEEEEEESSCCCHHHHHHHHHHH----HHH-TCSEEEEEE
T ss_pred CEEEEEEEEEEecccccccchhhcCCHHHHHHHHHhcCCceEEEeccCCCCchHHHHHHHHHH----HHc-CCCeEEEEE
Confidence 999999999999988777899999999999999999999999999999999999999998643 331 136799999
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCC
Q 012433 285 LGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEK 364 (464)
Q Consensus 285 lvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~ 364 (464)
++|++|+||+|+++|++||+++++ +|||+++++++++|++||||||||++||||+|||||||||||||||||+|
T Consensus 229 ~~g~~K~~di~~~~R~~~~~~~~~-~~~p~~~v~l~~~p~~m~~aGPreailhaiirkn~G~t~fIVGrDhag~~----- 302 (396)
T 1jhd_A 229 LLGKLKKGDIPAPVRDAAIRTMAE-VYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVG----- 302 (396)
T ss_dssp EECCCCTTCCCHHHHHHHHHHHHH-HHSCTTCEEEEEEECCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCT-----
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-hcCCCcceEEEechHHhhcCCchHHHHHHHHHHcCCCcEEEECCCCCCcc-----
Confidence 999999999999999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhHHhhhC-CCC-CcceeeEeceEEEecCCCceeec--CCCC-CcceeecCHHHHHHHHHCCCCCCCCccch
Q 012433 365 RDLYDADHGKKVLSMA-PGL-ERLNILPFKVAAYDKTQGKMAFF--DPSR-AKDFLFISGTKMRTLARSKENPPDGFMCP 439 (464)
Q Consensus 365 ~~~Y~~~~aq~i~~~~-~~~-~~i~i~~f~~~~Yc~~c~~~~~~--~ph~-~~~~~~iSGT~vR~~L~~G~~pP~~f~rP 439 (464)
+||++|++|+||+.+ +++ .+|++++|++++||++|++|++. |||+ ++++++||||+||++|++|+.||+|||+|
T Consensus 303 -~~y~~~~aq~il~~~~~~~~l~i~iv~~~~~~Y~~~~~~~~~~~~~p~~~~~~~~~ISgT~IR~~L~~G~~pP~~f~~p 381 (396)
T 1jhd_A 303 -DYYGAFDAQTIFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRDVPDHTKEDFVLLSGTKVREMLGQGIAPPPEFSRP 381 (396)
T ss_dssp -TCSCTTHHHHHHHHTSCTTSCSCEEEECCCEEEETTTTEEEEGGGCTTCCGGGEECCCHHHHHHHHHTTCCCCTTTCCH
T ss_pred -ccCCcchHHHHHHhcccccccceeEEecccceecCCCCeEEEccccCcccCCCccccCHHHHHHHHHCCCCCCcccCCH
Confidence 999999999999987 444 68999999999999999999985 9998 88999999999999999999999999999
Q ss_pred HHHHHHHHHhhccC
Q 012433 440 GGWKVLVEYYDSLT 453 (464)
Q Consensus 440 eV~~iL~~~~~~~~ 453 (464)
||+++|+++|++++
T Consensus 382 eV~~~I~~~~~~~~ 395 (396)
T 1jhd_A 382 EVAKILMDYYQSIN 395 (396)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccC
Confidence 99999999999864
No 5
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=100.00 E-value=3e-118 Score=962.21 Aligned_cols=384 Identities=29% Similarity=0.440 Sum_probs=366.0
Q ss_pred ccCCCCCceeecccCc-hhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCee
Q 012433 53 LIEPDGGKLTELIVDK-SLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVV 131 (464)
Q Consensus 53 li~PhGg~Lv~l~v~~-~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~ 131 (464)
|+.||||+|+||+|++ +++++++++|.+||+|.||++++||||||++|+||||+|||+++||+||+ ++|||+||++
T Consensus 2 ~~~phgg~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~l~~G~~sPl~gfm~~~d~~~v~--~~~~l~~g~~- 78 (573)
T 1m8p_A 2 ANAPHGGVLKDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADYDRVC--EDNRLADGNV- 78 (573)
T ss_dssp CSCCSTTSCCCHHHHTSTTHHHHHHHHTTSCEEEECHHHHHHHHHHHTSTTTTCCEECCHHHHHHHH--HHSBCTTSCB-
T ss_pred CCCCCCCcccccccCchHHHHHHHHHhccCCeEEeCHHHHHHHHHHhcCCcCCCcccCCHHHHHHHH--HhCcCCCCCC-
Confidence 6789999999999988 89999999999999999999999999999999999999999999999999 5999999987
Q ss_pred ecceeEEEecCHHHHHhc--CCCCeEEEeC-CCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEE
Q 012433 132 NMSVPIVLAIDDEQKRRI--GESTRVALVD-SDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLI 208 (464)
Q Consensus 132 pwpiPI~L~v~~e~~~~l--~~g~~vaL~d-~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~v 208 (464)
|||||||+|+++++++| ++|++|+|+| ++|+++|+|+|+|+|++||++||++||| +|++||||++++.+.|+|+|
T Consensus 79 -~~~Pi~l~v~~~~~~~l~~~~g~~v~L~~~~~g~~~a~l~v~e~~~~dk~~~~~~v~g-~~~~hP~v~~~~~~~g~~~v 156 (573)
T 1m8p_A 79 -FSMPITLDASQEVIDEKKLQAASRITLRDFRDDRNLAILTIDDIYRPDKTKEAKLVFG-GDPEHPAIVYLNNTVKEFYI 156 (573)
T ss_dssp -CCSCCCCEECHHHHHHTTCCTTCEEEEEETTTTEEEEEEEESCCCCCCHHHHHHHTSC-CCSSTHHHHHHHHTSCSEEC
T ss_pred -cceeEEEeCCHHHHHhhccCCCCEEEEEecCCCeEEEEEEeeeeecCCHHHHHHHHhC-CCCCCccHHHHHhccCCEEE
Confidence 69999999999999999 9999999998 8999999999999999999999999999 99999999998765599999
Q ss_pred eeeEEEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCC
Q 012433 209 GGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY 288 (464)
Q Consensus 209 gG~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~ 288 (464)
||+|+++++|.|+ +|++||+||+|+|+.|+++||++|||||||||+|||||+|+++| |.+. +++||||||+|+
T Consensus 157 ~G~~~~l~~~~~~-~~~~~~~tp~e~r~~~~~~gw~~v~afqtrnP~Hr~H~~l~~~a---~~~~---~~~llv~pl~g~ 229 (573)
T 1m8p_A 157 GGKIEAVNKLNHY-DYVALRYTPAELRVHFDKLGWSRVVAFQTRNPMHRAHRELTVRA---ARSR---QANVLIHPVVGL 229 (573)
T ss_dssp CEEEEECCCCCCC-SCGGGBCCHHHHHHHHHHTTCCSEEEECCSSCCCHHHHHHHHHH---HHHT---TCEEEECCBCCC
T ss_pred EEEEEEEecCCcc-CcHhhcCCHHHHHHHHHHcCCCeEEEEeeCCCcchhhHHHHHHH---HHhc---CCcEEEEeCCCC
Confidence 9999999998887 69999999999999999999999999999999999999998753 4455 489999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCC
Q 012433 289 TKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLY 368 (464)
Q Consensus 289 tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y 368 (464)
||+||+|+++|++||+++++ +| |+++++++++|++|||||||||+||||||||||||||||||||||||+++++.+||
T Consensus 230 ~k~~di~~~~R~~~~~~~~~-~~-p~~~v~l~~~p~~m~~agprea~~ha~ir~n~G~th~ivgrdhag~g~~~~~~~~Y 307 (573)
T 1m8p_A 230 TKPGDIDHFTRVRAYQALLP-RY-PNGMAVLGLLGLAMRMGGPREAIWHAIIRKNHGATHFIVGRDHAGPGSNSKGEDFY 307 (573)
T ss_dssp CCTTCHHHHHHHHHHHHHGG-GS-STTSEEECBBCCCCCCCHHHHHHHHHHHHHHHTCSEEEECTTTTCCCCCTTCCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHH-hC-CCCcEEEEecCchhhccCchHHHHHHHHHHHCCCCeEEECCCCCCCCCCCCCcccC
Confidence 99999999999999999999 44 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHhhhCCCCCcceeeEeceEEEecCCCceeec--CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHH
Q 012433 369 DADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFF--DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLV 446 (464)
Q Consensus 369 ~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~--~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~ 446 (464)
++|+||+||++++++.+|++++|++++||++|++|++. ||| +.+++.||||+||++|++|+.+|.||++|+|+++++
T Consensus 308 ~~~~a~~i~~~~~~~l~i~~v~fd~~~y~~~~g~~i~id~~~~-~~~~~~iSgt~ir~~l~~g~~~p~w~~~~eVsr~lR 386 (573)
T 1m8p_A 308 GPYDAQHAVEKYKDELGIEVVEFQMVTYLPDTDEYRPVDQVPA-GVKTLNISGTELRRRLRSGAHIPEWFSYPEVVKILR 386 (573)
T ss_dssp CTTHHHHHHHHHHHHHCCEEEECCCCCBBTTTTBCCCSSSSCT-TSCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHH
T ss_pred CcchHHHHHHhhhhhcCceeEeccceEEEcCCCcEEecccCCC-CceeecCChHHHHHHHhccCCCCcccccccccHHHH
Confidence 99999999999876678999999999999999999986 898 667899999999999999999999999999999999
Q ss_pred HHhhc
Q 012433 447 EYYDS 451 (464)
Q Consensus 447 ~~~~~ 451 (464)
+++++
T Consensus 387 e~~~~ 391 (573)
T 1m8p_A 387 ESNPP 391 (573)
T ss_dssp TTSCC
T ss_pred Hhccc
Confidence 99953
No 6
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=100.00 E-value=2.3e-116 Score=944.12 Aligned_cols=360 Identities=23% Similarity=0.324 Sum_probs=322.7
Q ss_pred CCccCCCCCceeecccCchhHHHHHHHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCe
Q 012433 51 AGLIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSV 130 (464)
Q Consensus 51 ~~li~PhGg~Lv~l~v~~~~~~~l~~ea~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~ 130 (464)
+.|+.||||+|+|| |+++++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 3 ~~~~~phgg~l~~~-~~~~~~~~~~~~a~~~~~~~l~~~~~~dlell~~G~~sPl~gfm~~~d~~~v~--~~~~l~~g~~ 79 (552)
T 3cr8_A 3 NQLIEPYGGTLVNL-IDPEKREALKHEALSLPSLDLDWQQQCELEMLMTGAYSPLTGFMTRAQCARVE--SAQQLDDGSF 79 (552)
T ss_dssp CCCCCCGGGSCCCC-BCGGGHHHHHHHHHTSCEEECCHHHHHHHHHHHHTTTTTCCEECCHHHHHHHH--HHCBCTTCCB
T ss_pred CCCCCCCCCccccC-CChHHHHHHHHHhccCCeEecCHHHHHHHHHHhcCCccCCcccCCHHHHHHHH--HhCcCCCCCC
Confidence 35789999999999 99999999999999999999999999999999999999999999999999999 6999999987
Q ss_pred eecceeEEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEee
Q 012433 131 VNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGG 210 (464)
Q Consensus 131 ~pwpiPI~L~v~~e~~~~l~~g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG 210 (464)
|||||||+|+++++++|++|++|+|+|.+|+++|+|+|+|+|++| |+|+|||
T Consensus 80 --~~~Pi~l~v~~~~~~~l~~g~~v~L~~~~g~~~a~l~v~e~~~~d--------------------------g~~~v~G 131 (552)
T 3cr8_A 80 --WPSPITLTSRDRALADRRPGERLALRDGEGYMLAILTLSDVWKDG--------------------------ERWHLAG 131 (552)
T ss_dssp --CCSCCCEEECCGGGTTCCTTCEEEEECTTSCEEEEEEEEEEEEET--------------------------TEEEEEE
T ss_pred --cceEEEEeCCHhHhhccCCCCEEEEECCCCcEEEEEEEEEEEeeC--------------------------CCEEEEE
Confidence 699999999999999999999999999999999999999999997 8999999
Q ss_pred eEEEeccCCCCCCCCcccCCHHHHHHHHHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCC
Q 012433 211 DLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK 290 (464)
Q Consensus 211 ~v~~l~~~~~~~~f~~~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK 290 (464)
+|+++++|.++ +|++||+||+|+|+.|+++||++|||||||||+|||||+++++ +++|.+ ++||||||+|+||
T Consensus 132 ~v~~~~~~~~~-~~~~~~~tp~e~r~~~~~~gw~~v~afqtrnp~Hrah~~~~~~---~~~~~~---~~lll~pl~g~~k 204 (552)
T 3cr8_A 132 EVEGAALPPHP-DFVSLRATPAELRALFVRRGWRRIIAWQARQPMHRAQYEFCLK---SAIENE---ANLLLHPQVGGDI 204 (552)
T ss_dssp EEEESCCCCCC-TTTTTBCCHHHHHHHHHHTTCCSEEEECCSSCCCHHHHHHHHH---HHHHTT---CEEEECCBCCCCT
T ss_pred EEEEEecCCcC-CchhhcCCHHHHHHHHHhcCCCceEEEecCCCCchHHHHHHHH---HHHhcC---CeEEEEeccCCCC
Confidence 99999988887 6999999999999999999999999999999999999999875 445774 8899999999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCC
Q 012433 291 ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDA 370 (464)
Q Consensus 291 ~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~ 370 (464)
+||||+++||+||+++++ +| |+++++|++||++|||||||||+||||||||||||||||||||||||+++++.+|||+
T Consensus 205 ~~d~~~~~r~~~~~~~~~-~~-p~~~~~l~~~p~~m~~agprea~~ha~~r~n~G~th~ivGrdhag~g~~~~~~~~Y~~ 282 (552)
T 3cr8_A 205 TEAPAYFGLVRSFLAIRD-RF-PAATTQLSLLPAPPPEASGRALLLRAIVARNFGCSLLIAGGEHQPDGGDCRRGEDLTQ 282 (552)
T ss_dssp TTCTTHHHHHHHHHHHGG-GS-CGGGEEECBBCSCCCCSCSHHHHHHHHHHHHHTCSEEEC-------------------
T ss_pred CCCCCHHHHHHHHHHHHH-hC-CCccEEEeecchhhcccCcHHHHHHHHHHHhCCCCeeeeCCCCCCCCCCCCccccCCc
Confidence 999999999999999999 45 9999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHhhhCCCCCcceeeEeceEEEecCCCceeec--CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 371 DHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFF--DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 371 ~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~--~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
|+||+||++++++.+|++++|++++||++|++|++. ||| +++++.||||+||++|++|+.||.||++|+|+++++++
T Consensus 283 ~~a~~i~~~~~~~l~i~pv~f~~~~y~~~~g~~~~~d~~~~-~~~~~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~ 361 (552)
T 3cr8_A 283 NRVDPSVAERAEKIGVRLIAYPRMVYVEDRAEHLPEAEAPQ-GARLLTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQ 361 (552)
T ss_dssp ---CCSSHHHHHHHTCEEECCCCEEEEGGGTEEEEGGGSCT-TCCEECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHH
T ss_pred chHHHHHHhhhhhcCCeeeeccceEEecCCCeEEecccCCC-CcccccCCHHHHHHHHhcCCCCCccccccchhhhhhhh
Confidence 999999999977779999999999999999999986 999 58999999999999999999999999999999999998
Q ss_pred hhc
Q 012433 449 YDS 451 (464)
Q Consensus 449 ~~~ 451 (464)
++.
T Consensus 362 ~~~ 364 (552)
T 3cr8_A 362 TPP 364 (552)
T ss_dssp SCC
T ss_pred ccc
Confidence 853
No 7
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=100.00 E-value=7.1e-116 Score=938.88 Aligned_cols=363 Identities=29% Similarity=0.480 Sum_probs=332.1
Q ss_pred HHhccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCeeecceeEEEecCHHHHHhcCCCCeE
Q 012433 76 REAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRV 155 (464)
Q Consensus 76 ~ea~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~pwpiPI~L~v~~e~~~~l~~g~~v 155 (464)
++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++ |||||||+|+++++++|++|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~dl~~l~~G~~sPl~gfm~~~d~~~v~--~~~~l~~g~~--~~~Pi~l~v~~~~~~~l~~g~~v 77 (546)
T 2gks_A 2 EKIKYLKSIQISQRSVLDLELLAVGAFTPLDRFMGEEDYRNVV--ESMRLKSGTL--FPIPITLPMEKEIAKDLKEGEWI 77 (546)
T ss_dssp --CCSSEEEECCHHHHHHHHHHHTTTTTTCCSSCCHHHHHHHH--HHSBCTTSCB--CCSCCCEEECHHHHTTCCTTCEE
T ss_pred cccccCCeEecCHHHHHHHHHHhcCCcCCccccCCHHHHHHHH--HhCcCCCCCC--cceeEEEeCCHHHHhhcCCCCEE
Confidence 5788999999999999999999999999999999999999999 5999999987 69999999999999999999999
Q ss_pred EEeCCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEeccCCCCCCCCcccCCHHHHH
Q 012433 156 ALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLR 235 (464)
Q Consensus 156 aL~d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~e~R 235 (464)
+|+|.+|+++|+|+|+|+|++||++||++||||+|++||||++++ ++|+|+|||+|+++++|.|+ +|++||+||+|+|
T Consensus 78 ~L~~~~g~~~a~l~v~e~~~~dk~~~~~~v~gt~~~~hp~v~~~~-~~g~~~~~G~~~~l~~~~~~-~~~~~~~tp~e~r 155 (546)
T 2gks_A 78 VLRDPKNVPLAIMRVEEVYKWNLEYEAKNVLGTTDPRHPLVAEMH-TWGEYYISGELKVIQLPKYY-DFPEYRKTPKQVR 155 (546)
T ss_dssp EEECTTCCEEEEEECCEEEECCHHHHHHHHHSCCCTTSHHHHHHT-TSCSEEEECCEEESCCCCCC-SCGGGBCCHHHHH
T ss_pred EEECCCCeeEEEEEeceeecCCHHHHHHHHhCCCCCCCcchHHHh-hcCCEEEEEEEEEeecCCcC-CcHhhcCCHHHHH
Confidence 999999999999999999999999999999999999999999976 46999999999999998887 6999999999999
Q ss_pred HHHHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCC
Q 012433 236 DEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPE 315 (464)
Q Consensus 236 ~~f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~ 315 (464)
+.|+++||++|||||||||+|||||+||++| +.+. +++|||||++|+||+||+|+++|++||+++++ +|||++
T Consensus 156 ~~~~~~gw~~v~afqtrnP~Hr~H~~l~~~a---~~~~---~~~llv~p~~g~~k~~di~~~~R~~~~~~~~~-~~~p~~ 228 (546)
T 2gks_A 156 EEIKSLGLDKIVAFQTRNPMHRVHEELTKRA---MEKV---GGGLLLHPVVGLTKPGDVDVYTRMRIYKVLYE-KYYDKK 228 (546)
T ss_dssp HHHHHHTCSCEEEECCSSCCCHHHHHHHHHH---HHHH---TSEEEECCBCSBCCTTSCCHHHHHHHHHHHHH-HHSCTT
T ss_pred HHHHHcCCCcEEEEecCCCCcHHHHHHHHHH---HHhc---CCcEEEEeCcCCCCCCCCCHHHHHHHHHHHHH-hcCCCC
Confidence 9999999999999999999999999998753 3355 48999999999999999999999999999999 799999
Q ss_pred ceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEE
Q 012433 316 TTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAA 395 (464)
Q Consensus 316 ~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~ 395 (464)
+++++++|++|||||||||+||||||||||||||||||||||||+++++.+|||+|+||+||++++++.+|++++|++++
T Consensus 229 ~v~~~~~p~~m~~agprea~~ha~ir~n~G~th~ivgrdhag~g~~~~~~~~Y~~~~a~~~~~~~~~~lgi~~v~fd~~~ 308 (546)
T 2gks_A 229 KTILAFLPLAMRMAGPREALWHGIIRRNYGATHFIVGRDHASPGKDSKGKPFYDPYEAQELFKKYEDEIGIKMVPFEELV 308 (546)
T ss_dssp TEEECBBCCBCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCCBCTTSCBSSCTTHHHHHHHHHHHHHTCEEEECCCCE
T ss_pred cEEEeecCchhhccCchHHHHHHHHHHhCCCCeEEECCCCCCCCCCCCCcccCCcchHHHHHHhcccccCceEEeccceE
Confidence 99999999999999999999999999999999999999999999998999999999999999998766789999999999
Q ss_pred EecCCCceeec--CCCCCcceeecCHHHHHHH-HHCCCCCCCCccchHHHHHHHHHhhc
Q 012433 396 YDKTQGKMAFF--DPSRAKDFLFISGTKMRTL-ARSKENPPDGFMCPGGWKVLVEYYDS 451 (464)
Q Consensus 396 Yc~~c~~~~~~--~ph~~~~~~~iSGT~vR~~-L~~G~~pP~~f~rPeV~~iL~~~~~~ 451 (464)
||++|++|++. |||++.++++||||+||++ |++|+.||+|||||||+++|+++|++
T Consensus 309 y~~~~g~~i~id~~~~~~~~~~~iSgt~iR~~~L~~g~~~p~~~~r~eV~~~lr~~~~~ 367 (546)
T 2gks_A 309 YVPELDQYVEINEAKKRNLKYINISGTEIRENFLKQGRKLPEWFTRPEVAEILAETYVP 367 (546)
T ss_dssp EETTTTEEECSCC---------------CTHHHHTTTCCCCTTTSCHHHHHHHHHHSCC
T ss_pred EEcCCCeEEeeeccCCCCceeeecchhhhhhhhhcCCCCCCccccchhHHHHHHHhhcc
Confidence 99999999986 7987778999999999999 99999999999999999999999954
No 8
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=100.00 E-value=2e-112 Score=868.44 Aligned_cols=343 Identities=30% Similarity=0.431 Sum_probs=328.0
Q ss_pred ccCCeEeeChhhHHHHHHHhcCCcCCCCCCCChhhhhhccccCCeecCCCCeeecceeEEEecCHHHHHhcCCCCeEEEe
Q 012433 79 ATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALV 158 (464)
Q Consensus 79 ~~lp~i~l~~~~l~dLelL~~G~fsPL~GFM~~~dy~sVl~~~~mRL~dG~~~pwpiPI~L~v~~e~~~~l~~g~~vaL~ 158 (464)
.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++ |||||||+|+++ ++|++|++|+|
T Consensus 3 ~~lp~i~l~~~~~~dlell~~G~fsPL~GfM~~~d~~~v~--~~~rl~~G~~--wpiPi~L~v~~~--~~l~~g~~v~L- 75 (349)
T 1v47_A 3 ETLPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVA--HEMRLPTGEV--WTIPILLQFREK--PRVGPGNTVAL- 75 (349)
T ss_dssp -CCCEEECCHHHHHHHHHHHTTTTTTCCSBCCHHHHHHHH--HHSBCTTSCB--CCSCCCEEESSC--CSCCTTCEEEE-
T ss_pred ccCceeecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--cCeEEEecCChh--hcCCCCCEEEE-
Confidence 4799999999999999999999999999999999999999 5999999988 599999999988 88999999999
Q ss_pred CCCCcEEEEEEeCccccCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEeccCCCCCCCCcccCCHHHHHHHH
Q 012433 159 DSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEF 238 (464)
Q Consensus 159 d~eG~~lAiL~V~eiy~~Dk~~ea~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~~~f~~~r~tP~e~R~~f 238 (464)
|.+|+++|+|+|+|+|++||++||++||||+|++||||++++ +.|+|+|||+|++++ + ++|++||+||+|+|+.|
T Consensus 76 ~~~g~~~a~l~v~e~~~~dk~~~~~~v~gt~d~~HPgv~~~~-~~g~~~vgG~v~~l~---~-~~f~~~~~tP~e~r~~f 150 (349)
T 1v47_A 76 LHGGERVALLHVAEAYELDLEALARAVFGTDSETHPGVARLY-GKGPYALAGRVEVLK---P-RPRTPLEKTPEEVRAFF 150 (349)
T ss_dssp EETTEEEEEEECCEEEECCHHHHHHHHHSCCCTTSHHHHHHH-HTCSEEEEBCEEESS---C-CCCCTTCCCHHHHHHHH
T ss_pred ccCCeeEEEEEeeeeeccCHHHHHHHHhCCCCcCCcchHHHh-hcCCEEEEEEEEEEE---c-CCchhhcCCHHHHHHHH
Confidence 789999999999999999999999999999999999999876 679999999999999 3 38999999999999999
Q ss_pred HhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 012433 239 SKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTV 318 (464)
Q Consensus 239 ~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~ 318 (464)
+++||++|||||||||+||||++|++. |++. .++|||||++|++|+||+|+++|++||+++++ +|||+++++
T Consensus 151 ~~~gw~~VvafqTrNPiHrgH~~l~~~----ale~---~d~vll~P~~g~~K~~d~~~~~R~~~~~~~i~-~~~p~~~~~ 222 (349)
T 1v47_A 151 RQRGWRKVVAFQTRNAPHRAHEYLIRL----GLEL---ADGVLVHPILGAKKPDDFPTEVIVEAYQALIR-DFLPQERVA 222 (349)
T ss_dssp HHTTCCSEEEEEESSCCCHHHHHHHHH----HHHH---SSEEEEEEBCSCCCTTSCCHHHHHHHHHHHHH-HHSCGGGEE
T ss_pred HhcCCCeEEEeecCCCCchHHHHHHHH----HHHh---CCcEEEEECCCCCCCCCCCHHHHHHHHHHHHh-hcCCCcceE
Confidence 999999999999999999999999874 5565 38999999999999999999999999999999 689999999
Q ss_pred EEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEec
Q 012433 319 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDK 398 (464)
Q Consensus 319 l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~ 398 (464)
++++|++||||||||++||||+|||||||||||||||||+| +||++++||+||++++ +.+|++++|++++||+
T Consensus 223 l~~~p~~m~~aGPreailhaiirkn~G~t~fIVGrDhag~~------~~y~~~~aq~i~~~~~-~l~i~~v~~~~~~Y~~ 295 (349)
T 1v47_A 223 FFGLATPMRYAGPKEAVFHALVRKNFGATHFLVGRDHAGVG------DFYDPYAAHRIFDRLP-PLGIEIVKVGAVFHCP 295 (349)
T ss_dssp ECCBCSCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCST------TCSCTTHHHHGGGGSC-CCSSEEEECCCEEEET
T ss_pred EEechHHhhcCCcHHHHHHHHHHHcCCCcEEEECcCCCCcc------cccCcccHHHHHHhhh-hcCceEEeccccEEcc
Confidence 99999999999999999999999999999999999999999 9999999999999998 6689999999999999
Q ss_pred CCCceeec--CCC-CCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 399 TQGKMAFF--DPS-RAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 399 ~c~~~~~~--~ph-~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
+|++|++. ||| +++++++||||+||++|++|+.||+|||||||+++|++|
T Consensus 296 ~~~~~~~~~~~p~~~~~~~~~ISgT~iR~~L~~G~~pp~~f~~peV~~~I~~~ 348 (349)
T 1v47_A 296 LCGGIASERTCPEGHREKRTAISMTKVRALLREGKAPPSELVRPELLPILRRG 348 (349)
T ss_dssp TTTEEEETTTSCGGGGGGCEECCHHHHHHHHHTTCCCCTTTSCGGGHHHHHTT
T ss_pred cCCceEEccccCccCCCcccccCHHHHHHHHHCcCCCchhcCCHHHHHHHHhh
Confidence 99999985 999 888999999999999999999999999999999999885
No 9
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=98.61 E-value=4e-07 Score=81.30 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=93.4
Q ss_pred EEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCC--CCCChHHHHHHHHHHHHcCCCCCCceEEEecCC
Q 012433 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKA--DDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPS 324 (464)
Q Consensus 247 vafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~--~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~ 324 (464)
+..=|-||+|+||..|++. |++.. +.+++.|...+.|+ ..++.+.|++-.+..+. + + +.+.+..+.
T Consensus 4 v~~GsFdp~H~GH~~l~~~----a~~~~---d~v~v~~~~~p~k~~~~~~~~~~R~~ml~~a~~-~-~--~~v~v~~~e- 71 (160)
T 1od6_A 4 VYPGSFDPLTNGHLDVIQR----ASRLF---EKVTVAVLENPSKRGQYLFSAEERLAIIREATA-H-L--ANVEAATFS- 71 (160)
T ss_dssp EEEECCTTCCHHHHHHHHH----HHHHS---SEEEEEEECC-----CCSSCHHHHHHHHHHHTT-T-C--TTEEEEEEC-
T ss_pred EEEeeeCCCCHHHHHHHHH----HHHHC---CEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHhc-C-C--CCEEEEecC-
Confidence 3344899999999999874 44553 45777776555565 57899999998887765 2 2 345555444
Q ss_pred CcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhH-HhhhCCCCCcceeeEeceEEEecCCCce
Q 012433 325 PMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKK-VLSMAPGLERLNILPFKVAAYDKTQGKM 403 (464)
Q Consensus 325 ~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~-i~~~~~~~~~i~i~~f~~~~Yc~~c~~~ 403 (464)
| .+...+ +++++.+||+|-|..| +|- +..+- .+...-+ .+++.+.+ ..
T Consensus 72 -----~----~~~~~l-~~l~~~~~v~G~d~~~--------~~~--~~~~~~~~~r~~~-~~~~~i~~------~~---- 120 (160)
T 1od6_A 72 -----G----LLVDFV-RRVGAQAIVKGLRAVS--------DYE--YELQMAHLNRQLY-PGLETLFI------LA---- 120 (160)
T ss_dssp -----S----CHHHHH-HHTTCSEEEEEECTTS--------CHH--HHHHHHHHHHHHT-TTCEEEEE------EC----
T ss_pred -----c----hHHHHH-HHcCCCEEEEeCCccc--------chH--HHHHHHHhCcCCC-CCCCEEEE------eC----
Confidence 2 222233 7799999999988433 221 11100 1111000 12222221 00
Q ss_pred eecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhh
Q 012433 404 AFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYD 450 (464)
Q Consensus 404 ~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~ 450 (464)
++ ....||+|.||+++++|.. ...|..|+|.+.|.+.|+
T Consensus 121 ---~~----~~~~ISST~IR~~l~~G~~-~~~~vP~~V~~~I~~~~~ 159 (160)
T 1od6_A 121 ---AT----RYSFVSSTMVKEIARYGGD-VSKLVPPATLRALKAKLG 159 (160)
T ss_dssp ---CG----GGTTCCHHHHHHHHHTTCC-CTTTSCHHHHHHHHHHTT
T ss_pred ---CC----CCCcccHHHHHHHHHcCCC-hhHHCCHHHHHHHHHHhc
Confidence 12 1236999999999999985 567999999999998774
No 10
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=98.54 E-value=3.1e-06 Score=75.22 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=94.5
Q ss_pred EEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 012433 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPM 326 (464)
Q Consensus 247 vafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~M 326 (464)
+..=|-||+|+||..|++. |++.. +-+++.|...+.|...++.+.|++-.+..+. + ++ .+.+..+.
T Consensus 5 i~~GsFDpvH~GH~~l~~~----a~~~~---d~v~v~~~~~p~k~~~~~~~~R~~ml~~a~~-~-~~--~v~v~~~~--- 70 (158)
T 1qjc_A 5 IYPGTFDPITNGHIDIVTR----ATQMF---DHVILAIAASPSKKPMFTLEERVALAQQATA-H-LG--NVEVVGFS--- 70 (158)
T ss_dssp EEEECCTTCCHHHHHHHHH----HHTTS---SEEEEEEESCCSSCCSSCHHHHHHHHHHHTT-T-CT--TEEEEEEC---
T ss_pred EEEecCCCCCHHHHHHHHH----HHHhC---CEEEEEECCCCCCCCCCCHHHHHHHHHHHHh-c-CC--CeEEcccc---
Confidence 3333899999999999864 55553 5577777777777677899999998887666 2 23 45555444
Q ss_pred ccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHH--hhhCCCCCcceeeEeceEEEecCCCcee
Q 012433 327 HYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKV--LSMAPGLERLNILPFKVAAYDKTQGKMA 404 (464)
Q Consensus 327 ryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i--~~~~~~~~~i~i~~f~~~~Yc~~c~~~~ 404 (464)
.| +...+ +.+++.+||+|-|... +-..-..+ +.+.-+ .+++.+.+
T Consensus 71 ~~-------~~~~l-~~l~~~~~v~G~d~~~-----------~~~~~~~~~~~~r~~~-~~~~~i~~------------- 117 (158)
T 1qjc_A 71 DL-------MANFA-RNQHATVLIRGLRAVA-----------DFEYEMQLAHMNRHLM-PELESVFL------------- 117 (158)
T ss_dssp SC-------HHHHH-HHTTCCEEEEECCTTC-----------CHHHHHHHHHHHHHHC-TTSEEEEE-------------
T ss_pred hH-------HHHHH-HHcCCCEEEEeccchh-----------hhHHHHHHHHhCccCC-CCCCEEEE-------------
Confidence 12 22333 6779999999977432 11111111 111000 01222111
Q ss_pred ecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHh
Q 012433 405 FFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYY 449 (464)
Q Consensus 405 ~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~ 449 (464)
.+ ......||+|.||+++++|.. ...|..++|++.|.+.+
T Consensus 118 --~~--~~~~~~iSST~IR~~i~~g~~-~~~~vP~~V~~yI~~~~ 157 (158)
T 1qjc_A 118 --MP--SKEWSFISSSLVKEVARHQGD-VTHFLPENVHQALMAKL 157 (158)
T ss_dssp --CC--CGGGTTCCHHHHHHHHHTTCC-CGGGSCHHHHHHHHHHH
T ss_pred --EC--CCCCCccCHHHHHHHHHcCCC-hhHhCCHHHHHHHHHhh
Confidence 11 111136999999999999985 45799999999998765
No 11
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=98.34 E-value=8.9e-06 Score=74.65 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=95.5
Q ss_pred EEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCC---CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 012433 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY---TKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIF 322 (464)
Q Consensus 246 VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~---tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~l 322 (464)
++..=|-||+|+||..|++. |++.. +-+.+.+..+. +|...++.+.|++-.+..+.+.-++.+.+.+..+
T Consensus 6 ~i~~G~Fdp~H~GH~~l~~~----a~~~~---d~v~v~v~~~~~p~~~~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~~~ 78 (181)
T 1ej2_A 6 GLLVGRMQPFHRGHLQVIKS----ILEEV---DELIICIGSAQLSHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPV 78 (181)
T ss_dssp EEEEECCTTCCHHHHHHHHH----HTTTC---SEEEEEECSTTCCSSSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred EEEEEEcCCcCHHHHHHHHH----HHHhC---CeeEEEECCCCCCcCCCCCCCHHHHHHHHHHHHhhCCCCCCcEEEEec
Confidence 44445999999999999874 44542 44544332332 2455789999999999887731122234444333
Q ss_pred CCCcccCChhHHHHHHHHHH-HcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecCCC
Q 012433 323 PSPMHYAGPTEVQWHAKARI-NAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQG 401 (464)
Q Consensus 323 p~~MryAGPREAllHAiiRk-NyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~ 401 (464)
...+ ....|+..+++ .++|+.+++|||. .++++... +++++..
T Consensus 79 --d~~~---~~~~w~~~~~~l~~~~~~~v~gr~~-----------------~~~~~~~~----~i~~~~~---------- 122 (181)
T 1ej2_A 79 --QDIE---CNALWVGHIKMLTPPFDRVYSGNPL-----------------VQRLFSED----GYEVTAP---------- 122 (181)
T ss_dssp --CCCS---CHHHHHHHHHHHSCCCSEEECCCHH-----------------HHHHHHHT----TCCEECC----------
T ss_pred --CccC---CHHHHHHHHHHHCCCCCEEEECCHH-----------------HHHHHHhC----CeEEEec----------
Confidence 3333 24578886665 5689999999873 12333321 2333321
Q ss_pred ceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 402 KMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 402 ~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
|. .+...||+|.||+++++|.. ...+..+.|.+.|.+.
T Consensus 123 ------~~--~~~~~ISST~IR~~l~~G~~-i~~lvP~~V~~yI~~~ 160 (181)
T 1ej2_A 123 ------PL--FYRDRYSGTEVRRRMLDDGD-WRSLLPESVVEVIDEI 160 (181)
T ss_dssp ------CC--SSTTTSSHHHHHHHHHHTCC-CGGGSCHHHHHHHHHT
T ss_pred ------CC--CccCcCcHHHHHHHHHcCCC-hhHhCCHHHHHHHHHc
Confidence 11 11225999999999999986 4578999999998764
No 12
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=98.23 E-value=2.3e-05 Score=72.43 Aligned_cols=170 Identities=18% Similarity=0.157 Sum_probs=95.8
Q ss_pred EEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecc-cCCCC--CCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 012433 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPL-GGYTK--ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIF 322 (464)
Q Consensus 246 VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~Pl-vG~tK--~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~l 322 (464)
++..=+-||+|+||..|++.|. +.. ..+.+++.|. .-+.| ..-++.+.|++-.+.+++. +| .+ .+.
T Consensus 10 ~v~~GsFdp~H~GH~~l~~~a~----~~~-~~d~v~~~~~~~~~~k~~~~~~~~~~R~~ml~~a~~~--~~--~v--~v~ 78 (194)
T 1kam_A 10 GIFGGTFDPPHNGHLLMANEVL----YQA-GLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQS--NP--SF--KLE 78 (194)
T ss_dssp EEEEECCSSCCHHHHHHHHHHH----HHT-TCSEEEEEECCCC---------CHHHHHHHHHHHHTT--CT--TE--EEC
T ss_pred EEEEeccccccHHHHHHHHHHH----HHh-CCCEEEEEECCCCCCcCCcCCCCHHHHHHHHHHHHcC--CC--Ce--EEe
Confidence 3444599999999999987543 331 1244666554 22334 3467899999999987772 33 33 345
Q ss_pred CCCcccCChhHHH-HHHHHHHHcCCc--eeeecCCCCC-CCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEec
Q 012433 323 PSPMHYAGPTEVQ-WHAKARINAGAN--FYIVGRDPAG-MGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDK 398 (464)
Q Consensus 323 p~~MryAGPREAl-lHAiiRkNyGcT--HfIVGRDHAG-vG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~ 398 (464)
+.....+||.=.+ .-.-+++.|.-+ .||+|-|... .. .+| +.++|+... .++.+....+..
T Consensus 79 ~~e~~~~~~~~t~~~l~~l~~~~p~~~~~~v~G~D~~~~~~------~W~---~~e~i~~~~------~~~v~~R~g~~~ 143 (194)
T 1kam_A 79 LVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLP------KWY---KLDELLNLI------QFIGVKRPGFHV 143 (194)
T ss_dssp CGGGSTTCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCC------CCH---HHHHHHHHS------EEEEEECSSCCC
T ss_pred HHHhcCCCCCChHHHHHHHHHHCCCCcEEEEEecchhhhhc------ccc---CHHHHHHhC------cEEEEECCCcch
Confidence 6666667753221 223345556544 8999999753 21 233 346676532 111111100000
Q ss_pred CC-Cceeec-CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHH
Q 012433 399 TQ-GKMAFF-DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447 (464)
Q Consensus 399 ~c-~~~~~~-~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~ 447 (464)
.. .++... .+ ...||+|.||+++++|.. -..+..+.|++.|.+
T Consensus 144 ~l~~~i~~~~~~-----~~~ISST~IR~~i~~g~~-~~~lvP~~V~~yI~~ 188 (194)
T 1kam_A 144 ETPYPLLFADVP-----EFEVSSTMIRERFKSKKP-TDYLIPDKVKKYVEE 188 (194)
T ss_dssp CCSSCCEEEECC-----CBCCCHHHHHHHHHHTCC-CTTTSCHHHHHHHHH
T ss_pred hcCCCEEEeCCC-----CCCcCHHHHHHHHHcCCC-chhhCCHHHHHHHHH
Confidence 00 111111 12 237999999999999986 456899999999876
No 13
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=98.19 E-value=2e-05 Score=74.09 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=103.2
Q ss_pred EEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccC-CCCC-CCCChHHHHHHHHHHHHcCCCCCCceEEEecCC
Q 012433 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG-YTKA-DDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPS 324 (464)
Q Consensus 247 vafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG-~tK~-~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~ 324 (464)
+..=|-||+|+||..|++.|.+.+ + .+.+++.|... ..|+ .-++.+.|++-.+..++. .| .+. +.+.
T Consensus 7 i~~GsFdPiH~GH~~l~~~a~~~~---~--~d~v~~~~~~~~~~k~~~~~~~~~R~~ml~~a~~~--~~--~v~--v~~~ 75 (213)
T 1k4m_A 7 LFGGTFDPVHYGHLKPVETLANLI---G--LTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIAD--KP--LFT--LDER 75 (213)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHH---T--CSCEEEEECSSCTTSCCCSSCHHHHHHHHHHHHTT--CT--TEE--ECCH
T ss_pred EEEeCcCCCCHHHHHHHHHHHHHc---C--CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHhcc--CC--CEE--EeHH
Confidence 444599999999999988654332 2 24466666533 3453 468999999999987772 23 333 4455
Q ss_pred CcccCChh--HHHHHHHHHHHcCCc---eeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCC----CCCcceeeEec-e-
Q 012433 325 PMHYAGPT--EVQWHAKARINAGAN---FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAP----GLERLNILPFK-V- 393 (464)
Q Consensus 325 ~MryAGPR--EAllHAiiRkNyGcT---HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~----~~~~i~i~~f~-~- 393 (464)
....+||. .-.+.. +++.||++ .||+|-|..-=- ..+|+ .++|++... .-.+..+..+. +
T Consensus 76 e~~~~~~s~t~~~l~~-l~~~~~~~~~~~~i~G~D~~~~l-----~~W~~---~~~i~~~~~~vv~~R~~~~~~~~~~~~ 146 (213)
T 1k4m_A 76 ELKRNAPSYTAQTLKE-WRQEQGPDVPLAFIIGQDSLLTF-----PTWYE---YETILDNAHLIVCRRPGYPLEMAQPQY 146 (213)
T ss_dssp HHHCSSCCCHHHHHHH-HHHHHCTTSCEEEEEEHHHHHHG-----GGSTT---HHHHHHHCEEEEECCTTCCSSCSSHHH
T ss_pred HhcCCCCCcHHHHHHH-HHHHhCCCCcEEEEEehhhhhhh-----hccCC---HHHHHhhCcEEEEECCCCchhhhhhHH
Confidence 55566653 333333 77888999 899999865311 12343 456666431 00000000000 0
Q ss_pred -EEE----ec--------CCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 394 -AAY----DK--------TQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 394 -~~Y----c~--------~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
..+ .+ ..+.+... +. ....||+|.||+++++|.. ...+..++|++.|.+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~i~~~-~~---~~~~iSST~IR~~i~~g~~-i~~lvP~~V~~yI~~~ 209 (213)
T 1k4m_A 147 QQWLEDHLTHNPEDLHLQPAGKIYLA-ET---PWFNISATIIRERLQNGES-CEDLLPEPVLTYINQQ 209 (213)
T ss_dssp HHHHHHHBCSCTTHHHHSSSCCEEEE-CC---CCCCCCHHHHHHHHHTTCC-CTTTSCHHHHHHHHHH
T ss_pred HHHHhhhhcchhhhhhhccCCeEEEE-eC---CcccCCHHHHHHHHHcCCC-chhcCCHHHHHHHHHc
Confidence 000 00 01111111 11 1357999999999999987 5678999999998763
No 14
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=98.14 E-value=5e-05 Score=68.48 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=92.3
Q ss_pred EEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCC
Q 012433 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSP 325 (464)
Q Consensus 246 VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~ 325 (464)
++..=|-||+|+||..|++. |++.. +-+++.|..-+.|..-++.+.|++-.+..+. + ++ .+.+..+.
T Consensus 5 ~i~~GsFDpvH~GH~~li~~----a~~~~---d~v~v~~~~~p~k~~l~~~~~R~~ml~~a~~-~-~~--~v~v~~~e-- 71 (169)
T 1o6b_A 5 AVCPGSFDPVTYGHLDIIKR----GAHIF---EQVYVCVLNNSSKKPLFSVEERCELLREVTK-D-IP--NITVETSQ-- 71 (169)
T ss_dssp EEEEECCTTCCHHHHHHHHH----HHHHS---SEEEEEECCCCSSCCSSCHHHHHHHHHHHHT-T-CT--TEEEEECS--
T ss_pred EEEEEeeCCCCHHHHHHHHH----HHHhC---CEEEEEECCCCccCCCCCHHHHHHHHHHHHh-c-CC--CEEEcccc--
Confidence 44445999999999999874 44553 4466666544456567899999998887776 2 23 45454444
Q ss_pred cccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhH-HhhhCCCCCcceeeEeceEEEecCCCcee
Q 012433 326 MHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKK-VLSMAPGLERLNILPFKVAAYDKTQGKMA 404 (464)
Q Consensus 326 MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~-i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~ 404 (464)
-| ... . -+.+++..||+|-|... +| + +..+- .+... ...+++.+.+ ..
T Consensus 72 -~~------~~~-~-l~~l~~~~~i~G~d~~~--------~~-~-~~~~~~~~~r~-~~~~~~~i~~------~~----- 120 (169)
T 1o6b_A 72 -GL------LID-Y-ARRKNAKAILRGLRAVS--------DF-E-YEMQGTSVNRV-LDESIETFFM------MA----- 120 (169)
T ss_dssp -SC------HHH-H-HHHTTCSEEEEEECSGG--------GH-H-HHHHHHHHHHH-HCTTSEEEEE------EC-----
T ss_pred -hH------HHH-H-HHHcCCCEEEEcCcccc--------ch-H-HHHHHHHHhcc-ccCCCCEEEE------EC-----
Confidence 11 122 1 27789999999988542 11 0 11110 11110 0012322221 00
Q ss_pred ecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 405 FFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 405 ~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
++ ....||+|.||+++++|..+ ..+..|.|.+.|.+.
T Consensus 121 --~~----~~~~ISST~IR~~l~~G~~~-~~~vP~~V~~yi~~~ 157 (169)
T 1o6b_A 121 --NN----QYSFLSSSIVKEVARYDGSV-SEFVPPEVELALQQK 157 (169)
T ss_dssp --CS----TTTTCCHHHHHHHHHTTCCC-TTTSCHHHHHHHHHH
T ss_pred --CC----CCCcCcHHHHHHHHHcCCCh-hHHCCHHHHHHHHHh
Confidence 11 11259999999999999865 468899999999875
No 15
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=98.13 E-value=1e-05 Score=73.95 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=95.3
Q ss_pred EeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecc-cCCCC--CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCC
Q 012433 248 AFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPL-GGYTK--ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPS 324 (464)
Q Consensus 248 afQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~Pl-vG~tK--~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~ 324 (464)
..=|-||+|+||..|++.|. +.. ..+.+++.|. .-..| +.-++.+.|++-.+.+++ + .+ . +.+.+.
T Consensus 7 ~~GsFDPvH~GH~~li~~a~----~~~-~~d~v~~~~~~~~~~k~~~~~~~~~~R~~ml~~~~~-~-~~--~--v~v~~~ 75 (189)
T 2qtr_A 7 IGGTFDPPHYGHLLIANEVY----HAL-NLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATE-A-EE--H--FSICLE 75 (189)
T ss_dssp EEECCSSCCHHHHC-CHHHH----HHT-TCSEEEEEECSSCTTCTTSCCCCHHHHHHHHHHHHT-T-CT--T--EEECCT
T ss_pred EecCcccccHHHHHHHHHHH----HHc-CCCEEEEEECCCCCCccCCCCCCHHHHHHHHHHHhC-C-CC--C--EEEehH
Confidence 33489999999999987543 331 1245656555 33345 356899999999988776 2 23 3 344677
Q ss_pred CcccCChhHHHHHHHHHHHcCCce------eeecCCCC-CCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEe
Q 012433 325 PMHYAGPTEVQWHAKARINAGANF------YIVGRDPA-GMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYD 397 (464)
Q Consensus 325 ~MryAGPREAllHAiiRkNyGcTH------fIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc 397 (464)
....+||.=.+ . .+ +.+++.+ ||+|-|.. |.. .+| +.++|++.. .++.+....|-
T Consensus 76 e~~~~~~~~~~-~-~l-~~l~~~~p~~~~~~v~G~D~~~~~~------~w~---~~~~l~~~~------~~~v~~r~~~~ 137 (189)
T 2qtr_A 76 ELSRKGPSYTY-D-TM-LQLTKKYPDVQFHFIIGGDMVEYLP------KWY---NIEALLDLV------TFVGVARPGYK 137 (189)
T ss_dssp GGGSCSCCCHH-H-HH-HHHHHHCTTCEEEEEEEHHHHHHGG------GST---THHHHTTTC------EEEEECCTTCC
T ss_pred HhcCCCCCCHH-H-HH-HHHHHHCCCCCEEEEEehhhhhhhh------ccC---CHHHHHHhC------CEEEEECCCCC
Confidence 77777775222 2 12 4455556 99998864 222 233 234555421 11111100000
Q ss_pred -cCCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHH
Q 012433 398 -KTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447 (464)
Q Consensus 398 -~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~ 447 (464)
.....+... +. ....||+|.||+++++|.. -..+..|+|++.|.+
T Consensus 138 ~~~~~~v~~~-~~---~~~~iSST~IR~~l~~g~~-~~~lvP~~V~~yI~~ 183 (189)
T 2qtr_A 138 LRTPYPITTV-EI---PEFAVSSSLLRERYKEKKT-CKYLLPEKVQVYIER 183 (189)
T ss_dssp CCCSSCCEEE-CC---CCCCCCHHHHHHHHHTTCC-CTTTSCHHHHHHHHH
T ss_pred ccCCceEEEE-cC---CCCccCHHHHHHHHHcCCC-chhcCCHHHHHHHHH
Confidence 000011111 11 1237999999999999987 456889999999876
No 16
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=97.98 E-value=0.00014 Score=68.08 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=99.6
Q ss_pred CeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 012433 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFP 323 (464)
Q Consensus 244 ~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp 323 (464)
+.++..=+-||+|+||..|+++ |.+.. +-|.+-+..-+.|..-++.+-|++..+.+++ + ++ .+.+..+.
T Consensus 23 ki~v~~GsFDpiH~GHl~li~~----A~~~~---d~viv~v~~~p~K~~l~s~eeR~~ml~~~~~-~-v~--~v~v~~f~ 91 (187)
T 3k9w_A 23 VVAVYPGTFDPLTRGHEDLVRR----ASSIF---DTLVVGVADSRAKKPFFSLEERLKIANEVLG-H-YP--NVKVMGFT 91 (187)
T ss_dssp CEEEEEECCTTCCHHHHHHHHH----HHHHS---SEEEEEEECCGGGCCSSCHHHHHHHHHHHHT-T-CT--TEEEEEES
T ss_pred EEEEEEEeCCcCcHHHHHHHHH----HHHHC---CcEEEEEecCCccCCCCCHHHHHHHHHHHhc-c-CC--cEEEEech
Confidence 3455555999999999999874 44553 4465555555567677999999999998876 2 33 44444443
Q ss_pred CCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhh--HHhhhCCCCCcceeeEeceEEEecCCC
Q 012433 324 SPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGK--KVLSMAPGLERLNILPFKVAAYDKTQG 401 (464)
Q Consensus 324 ~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq--~i~~~~~~~~~i~i~~f~~~~Yc~~c~ 401 (464)
|-. . -. .+.+|+..+|+|-|-.. ||- |+.+ .+-.... .+++.+.+ ..
T Consensus 92 ------~~~---~-d~-l~~l~~~~iv~G~r~~~--------Df~--~E~~la~~nr~l~--~~ietv~l------~~-- 140 (187)
T 3k9w_A 92 ------GLL---K-DF-VRANDARVIVRGLRAVS--------DFE--YEFQMAGMNRYLL--PDVETMFM------TP-- 140 (187)
T ss_dssp ------SCH---H-HH-HHHTTCSEEEEECCTTS--------CHH--HHHHHHHHHHHHC--TTCEEEEE------CC--
T ss_pred ------hhH---H-HH-HHHcCCCEEEECCCccc--------ccc--hHHHHHHHHHHhC--CCCcEEEE------ec--
Confidence 211 1 12 35689999999955221 222 2221 1111111 13443322 11
Q ss_pred ceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhhcc
Q 012433 402 KMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYDSL 452 (464)
Q Consensus 402 ~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~~~ 452 (464)
+| ....||+|.||+.++.|..+ ..|..|.|++.|.+-++..
T Consensus 141 -----~~----~~~~ISST~IRe~~~~g~~i-~~lVP~~V~~~i~~k~~~~ 181 (187)
T 3k9w_A 141 -----SD----QYQFISGTIVREIAQLGGDV-SKFVFPSVEKWLTEKVAAM 181 (187)
T ss_dssp -----CG----GGTTCCHHHHHHHHHTTCCC-TTTSCHHHHHHHHHHHHHH
T ss_pred -----cc----ccccccHHHHHHHHHcCCCh-hHHCCHHHHHHHHHHhccc
Confidence 12 34579999999999999976 7799999999999877653
No 17
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=97.97 E-value=0.00011 Score=67.62 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=93.3
Q ss_pred eEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 012433 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFP 323 (464)
Q Consensus 245 ~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp 323 (464)
+|+-|- |-||+|.||..+.+ .|.+.. +-|++-|..-+.|..-++.+.|++-.+..++. +| .+.+..+.
T Consensus 4 ki~i~~GsFDPiH~GHl~i~~----~a~~~~---d~viv~v~~~p~K~~~~~~~~R~~ml~~a~~~--~~--~v~v~~~e 72 (168)
T 3f3m_A 4 TIAVIPGSFDPITYGHLDIIE----RSTDRF---DEIHVCVLKNSKKEGTFSLEERMDLIEQSVKH--LP--NVKVHQFS 72 (168)
T ss_dssp CEEEEEECCTTCCHHHHHHHH----HHGGGS---SEEEEEECC-----CCSCHHHHHHHHHHHTTT--CT--TEEEEECC
T ss_pred eEEEEEEEcCcCCHHHHHHHH----HHHHhC---CEEEEEEcCCCCCCCCCCHHHHHHhHHHHhcC--CC--CEEEEEcC
Confidence 444444 99999999999986 455663 56777777666677789999999999887762 33 34455444
Q ss_pred CCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhh---hCCCCCcceeeEeceEEEecCC
Q 012433 324 SPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLS---MAPGLERLNILPFKVAAYDKTQ 400 (464)
Q Consensus 324 ~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~---~~~~~~~i~i~~f~~~~Yc~~c 400 (464)
|-. . =.-+.++++.||.|-|-.. || .++.+ +.. ... .+++.+ |...
T Consensus 73 ------~~t---v--d~~~~l~~~~~I~G~d~~~--------d~--~~e~~-~a~~~r~l~--~~~e~v------~l~~- 121 (168)
T 3f3m_A 73 ------GLL---V--DYCEQVGAKTIIRGLRAVS--------DF--EYELR-LTSMNKKLN--NEIETL------YMMS- 121 (168)
T ss_dssp ------SCH---H--HHHHHHTCCEEEEEECTTC--------CH--HHHHH-HHHHHHHHC--TTSEEE------EEEC-
T ss_pred ------CCH---H--HHHHHcCCCEEEEcCCchh--------hh--hHHHH-HhHHhHhhC--CCCcEE------EEeC-
Confidence 311 1 1125579999999977321 22 11111 111 111 122221 1111
Q ss_pred CceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhh
Q 012433 401 GKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYD 450 (464)
Q Consensus 401 ~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~ 450 (464)
+| ....||+|.||++++.|..+ ..|..+.|.+.|.+.++
T Consensus 122 ------~p----~~~~ISST~IRe~~~~g~~i-~~lvP~~V~~~i~~~~~ 160 (168)
T 3f3m_A 122 ------ST----NYSFISSSIVKEVAAYRADI-SEFVPPYVEKALKKKFK 160 (168)
T ss_dssp ------CT----TTTTCCHHHHHHHHHTTCCC-TTTSCHHHHHHHHHHHC
T ss_pred ------Cc----ccccccHHHHHHHHHcCCCh-hHHCCHHHHHHHHHhhc
Confidence 22 12249999999999999875 68999999999887765
No 18
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=97.83 E-value=6.1e-05 Score=68.77 Aligned_cols=151 Identities=18% Similarity=0.185 Sum_probs=90.3
Q ss_pred EEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCC
Q 012433 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPS 324 (464)
Q Consensus 246 VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~ 324 (464)
++-|- |-||+|.||..+++ .|.+.+ +-|++-+..-+.|..-++.+.|++..+.++. . +.+.+..+.
T Consensus 7 i~i~~GsFDPiH~GHl~li~----~A~~~~---d~viv~v~~~~~K~~~~~~~~R~~m~~~~~~--~---~~v~V~~~~- 73 (162)
T 4f3r_A 7 IAIYPGTFDPLTNGHVDIIE----RALPLF---NKIIVACAPTSRKDPHLKLEERVNLIADVLT--D---ERVEVLPLT- 73 (162)
T ss_dssp EEEEEECCTTCCHHHHHHHH----HHGGGC---SEEEEEECCC------CCHHHHHHHHHHHCC--C---TTEEEEECC-
T ss_pred EEEEEEEcCCCCHHHHHHHH----HHHHHC---CcEEEEEecCCccCCCCCHHHHHHHHHHhhC--C---CCEEEEecc-
Confidence 33333 99999999999986 456664 5677766666667677999999999887765 2 345454433
Q ss_pred CcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhh--HHhhhCCCCCcceeeEeceEEEecCCCc
Q 012433 325 PMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGK--KVLSMAPGLERLNILPFKVAAYDKTQGK 402 (464)
Q Consensus 325 ~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq--~i~~~~~~~~~i~i~~f~~~~Yc~~c~~ 402 (464)
| +.--.+ +.+|++.||.|-|-.+ ||- |+.| .+-.... .+++.+.+ ..
T Consensus 74 -----~----l~~~~~-~~~~~~~~v~G~r~~~--------Df~--~e~~~a~~nr~l~--~~ietv~l------~~--- 122 (162)
T 4f3r_A 74 -----G----LLVDFA-KTHQANFILRGLRAVS--------DFD--YEFQLAHMNYQLS--PEIETIFL------PA--- 122 (162)
T ss_dssp -----S----CHHHHH-HHTTCCEEEEEECSHH--------HHH--HHHHHHHHHHHHC--TTCEEEEE------EC---
T ss_pred -----c----hHHHHH-HHcCCCEEEECCCchh--------hhh--hHHHHHHHHHHhC--CCccEEEE------EC---
Confidence 3 111223 4579999999965221 331 2221 1111121 13454433 11
Q ss_pred eeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHh
Q 012433 403 MAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYY 449 (464)
Q Consensus 403 ~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~ 449 (464)
+| ....||+|.||+.++.|..+ ..|..|.|.+.|.+-+
T Consensus 123 ----~~----~~~~ISST~IRe~~~~g~~i-~~~VP~~V~~~l~~~~ 160 (162)
T 4f3r_A 123 ----RE----GYSYVSGTMVREIVTLGGDV-SPFVPPLVARHLQKRR 160 (162)
T ss_dssp ----CG----GGSSCCHHHHHHHHHTTCCC-TTTSCHHHHHHC----
T ss_pred ----Cc----ccccccHHHHHHHHHcCCCh-hHhCCHHHHHHHHHHh
Confidence 22 34579999999999999976 7899999999887644
No 19
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=97.80 E-value=0.00024 Score=64.35 Aligned_cols=144 Identities=15% Similarity=0.095 Sum_probs=88.1
Q ss_pred ecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCC---CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 012433 250 QLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY---TKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPM 326 (464)
Q Consensus 250 QTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~---tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~M 326 (464)
=|-||+|.||..|++. |++.. +-+++.+-.+. +|...++.+.|++-.+..+++ +|. .+.+. +...
T Consensus 7 GsFdp~H~GH~~l~~~----a~~~~---d~v~v~v~~~~~p~~~~~~~~~~~R~~m~~~~~~~--~~~-~v~v~--~~d~ 74 (168)
T 1f9a_A 7 GRFQPFHKGHLEVIKK----IAEEV---DEIIIGIGSAQKSHTLENPFTAGERILMITQSLKD--YDL-TYYPI--PIKD 74 (168)
T ss_dssp ECCTTCCHHHHHHHHH----HTTTC---SEEEEEECSTTCCSSSSCCSCHHHHHHHHHHHHTT--SSC-EEEEE--ECCC
T ss_pred EecCCcCHHHHHHHHH----HHHhC---CeEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHhc--CCC-ceEEE--eeCC
Confidence 3899999999999864 44552 44544322332 244568999999999988873 342 23222 2222
Q ss_pred ccCChhHHHHHHHHH-HHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEecCCCceee
Q 012433 327 HYAGPTEVQWHAKAR-INAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAF 405 (464)
Q Consensus 327 ryAGPREAllHAiiR-kNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~ 405 (464)
.+. +..|+..++ ..+.|+.+++||+. + ++++.. .++.++.
T Consensus 75 l~~---~~~w~~~~~~~~~~~~~~~~~~~~------------~-----~~~~~~----~~i~~~~--------------- 115 (168)
T 1f9a_A 75 IEF---NSIWVSYVESLTPPFDIVYSGNPL------------V-----RVLFEE----RGYEVKR--------------- 115 (168)
T ss_dssp CSC---GGGHHHHHHHHSCCCSEEECCCHH------------H-----HHHHHH----TTCEEEC---------------
T ss_pred ccc---HHHHHHHHHHhccCCCEEEECcHH------------H-----HHhhhh----cCcEEEe---------------
Confidence 222 347887654 45577777766642 1 233321 1233321
Q ss_pred cCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 406 FDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 406 ~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
.|. .+...||+|.||+++++|.. ...|..+.|++.|.+.
T Consensus 116 -~~~--~~~~~ISST~IR~~~~~g~~-i~~lvP~~V~~yI~~~ 154 (168)
T 1f9a_A 116 -PEM--FNRKEYSGTEIRRRMLNGEK-WEHLVPKAVVDVIKEI 154 (168)
T ss_dssp -CCC--CSTTTSSHHHHHHHHHHTCC-CGGGSCHHHHHHHHHH
T ss_pred -CCc--cccCcccHHHHHHHHHcCCC-hhHcCCHHHHHHHHHc
Confidence 111 11224999999999999986 4678999999988754
No 20
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=97.71 E-value=0.00013 Score=66.42 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=93.5
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAG 330 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAG 330 (464)
|-||+|.||..+++ .|++.+ +-|++-+..-+.|..-++.+.|++..+..++ ..| .+.+..+ .|
T Consensus 10 sFDPiH~GHl~ii~----~A~~~~---D~viv~v~~~~~K~~~~~~~eR~~ml~~a~~--~~~--~v~v~~~------~~ 72 (157)
T 3nv7_A 10 TFDPVTNGHIDIIH----RSSELF---EKLIVAVAHSSAKNPMFSLDERLKMIQLATK--SFK--NVECVAF------EG 72 (157)
T ss_dssp CCTTCCHHHHHHHH----HHHTTS---SEEEEEEECCGGGCCSSCHHHHHHHHHHHHT--TST--TEEEEEE------CS
T ss_pred EcCCCCHHHHHHHH----HHHHhC---CceEEEEccCCCCCCCCCHHHHHHHHHHHhc--CCC--cEEEEec------Cc
Confidence 89999999999986 456664 5566665555567778999999999998887 233 4444433 22
Q ss_pred hhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhH--HhhhCCCCCcceeeEeceEEEecCCCceeecCC
Q 012433 331 PTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKK--VLSMAPGLERLNILPFKVAAYDKTQGKMAFFDP 408 (464)
Q Consensus 331 PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~--i~~~~~~~~~i~i~~f~~~~Yc~~c~~~~~~~p 408 (464)
++-. ..+.+|++.+|-|=+..+ ||- |+-|- .-.... .+++.+.+ +
T Consensus 73 ----l~~~-~~~~~~~~~ivrG~r~~~--------D~~--ye~~~a~~n~~l~--~~ietv~l----------------~ 119 (157)
T 3nv7_A 73 ----LLAY-LAKEYHCKVLVRGLRVVS--------DFE--YELQMGYANKSLN--HELETLYF----------------M 119 (157)
T ss_dssp ----CHHH-HHHHTTCCCBCCCCSCCC--------CHH--HHHHHHHHHHHSS--CCCCCCCC----------------C
T ss_pred ----hHHH-HHHHcCCCEEEECCcccc--------hhh--hhHHHHHHHHHhC--CCceEEEE----------------c
Confidence 3322 345679999998844322 332 22221 111111 12443322 1
Q ss_pred CCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHH
Q 012433 409 SRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447 (464)
Q Consensus 409 h~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~ 447 (464)
.......||+|.||++++.|..+ ..|..|.|++.|.+
T Consensus 120 -~~~~~~~iSSt~vRe~~~~ggdv-~~~VP~~V~~~l~~ 156 (157)
T 3nv7_A 120 -PTLQNAFISSSIVRSIIAHKGDA-SHLVPKEIYPLISK 156 (157)
T ss_dssp -CCHHHHTCCHHHHHHHHHTTCCC-TTTSCTTTHHHHCC
T ss_pred -CCcccceeeHHHHHHHHHcCCCh-HHhCCHHHHHHHhh
Confidence 13345689999999999999875 67899999887753
No 21
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=97.68 E-value=0.00056 Score=62.54 Aligned_cols=146 Identities=21% Similarity=0.196 Sum_probs=90.9
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcccCC
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAG 330 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~MryAG 330 (464)
|-||+|.||..+.+ .|++.. +-|++-|.....|..-++.+.|++-.+..+++ +| .+.+..+. |
T Consensus 20 sFdP~H~GHl~l~~----~A~~~~---D~viv~v~~~~~kk~~~~~~~R~~ml~~a~~~--~~--~v~v~~~e------~ 82 (173)
T 1vlh_A 20 SFDPITLGHVDIIK----RALSIF---DELVVLVTENPRKKCMFTLEERKKLIEEVLSD--LD--GVKVDVHH------G 82 (173)
T ss_dssp CCTTCCHHHHHHHH----HHHTTC---SEEEEEEECCTTCCCSSCHHHHHHHHHHHTTT--CT--TEEEEEEC------S
T ss_pred EECcCcHHHHHHHH----HHHHHC---CEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcC--CC--CEEEecCc------c
Confidence 89999999999986 456664 66888887776777789999999999877762 34 45555444 3
Q ss_pred hhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhh----hCCCCCcceeeEeceEEEecCCCceeec
Q 012433 331 PTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLS----MAPGLERLNILPFKVAAYDKTQGKMAFF 406 (464)
Q Consensus 331 PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~----~~~~~~~i~i~~f~~~~Yc~~c~~~~~~ 406 (464)
- + .-.-+.++++.||-| +. ..++ -..++. .-++..+++. +|.. .
T Consensus 83 ~----t-vd~l~~l~~~~~i~g-----l~------~w~d---~~~~~~~~~~~r~~~~~~~~------i~l~-------~ 130 (173)
T 1vlh_A 83 L----L-VDYLKKHGIKVLVRG-----LR------AVTD---YEYELQMALANKKLYSDLET------VFLI-------A 130 (173)
T ss_dssp C----H-HHHHHHHTCCEEEEE-----EC------TTSC---HHHHHHHHHHHHHHSTTCEE------EEEE-------C
T ss_pred h----H-HHHHHHhCCCeEEeC-----CC------cccc---hhhccchhhcCCCCCCCCcE------EEEe-------C
Confidence 1 1 112255688888844 22 1111 111221 0011111221 1110 0
Q ss_pred CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhh
Q 012433 407 DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYD 450 (464)
Q Consensus 407 ~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~ 450 (464)
.| ....||+|.||+.+++|.. ...|..+.|.+.|.+.++
T Consensus 131 ~~----~~~~iSST~IR~~i~~g~~-i~~lvP~~V~~yI~~~~~ 169 (173)
T 1vlh_A 131 SE----KFSFISSSLVKEVALYGGD-VTEWVPPEVARALNEKLK 169 (173)
T ss_dssp CG----GGTTCCHHHHHHHHHTTCC-CTTTSCHHHHHHHHHHTC
T ss_pred CC----CCCceeHHHHHHHHHcCCC-hhHcCCHHHHHHHHHHHh
Confidence 11 1124999999999999985 456899999999988774
No 22
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=97.57 E-value=0.00042 Score=63.78 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=86.8
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEE-EecCCCcccC
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVV-SIFPSPMHYA 329 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l-~~lp~~MryA 329 (464)
|-||+|.||..+.++ |++.. +-|++-|..-+.|..-++.+.|++-.+..+++ +| .+.+ ..+.
T Consensus 10 sFDPiH~GHl~i~~~----a~~~~---D~viv~v~~~~~K~~~~~~~~R~~ml~~a~~~--~~--~v~v~~~~e------ 72 (171)
T 3nd5_A 10 SFDPMTNGHLNLIER----SAKLF---DEVIIGVFINTSKQTLFTPEEKKYLIEEATKE--MP--NVRVIMQET------ 72 (171)
T ss_dssp CCTTCCHHHHHHHHH----HHTTC---SEEEEEEEC------CCCHHHHHHHHHHHHTT--CT--TEEEEEECS------
T ss_pred EccccCHHHHHHHHH----HHHHC---CCeEEEEecCCCCCCCCCHHHHHHHHHHHHcc--CC--CEEEeeCCC------
Confidence 899999999999864 55663 56777776666777789999999999988872 33 3444 5454
Q ss_pred ChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhC--C-CC-CcceeeEeceEEEecCCCceee
Q 012433 330 GPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMA--P-GL-ERLNILPFKVAAYDKTQGKMAF 405 (464)
Q Consensus 330 GPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~--~-~~-~~i~i~~f~~~~Yc~~c~~~~~ 405 (464)
|-. . - ..+.++++.||.|-|-.. || +..+... . .+ .+++.+.+ ..
T Consensus 73 ~~t---v-d-~~~~l~~~~~i~G~~~~~--------d~------~~e~~la~~nr~l~~~~etv~l------~~------ 121 (171)
T 3nd5_A 73 QLT---V-E-SAKSLGANFLIRGIRNVK--------DY------EYEKDIAKMNQHLAPEIETVFL------LA------ 121 (171)
T ss_dssp SCH---H-H-HHHHHTCCEEEEEECSHH--------HH------HHHHHHHHHHHHHCTTSEEEEE------EC------
T ss_pred CcH---H-H-HHHHCCCCEEEECCCchh--------hh------HHHHHHHHHhhhhcCCccEEEE------eC------
Confidence 211 1 1 124458889999955221 22 1222211 0 00 11222221 11
Q ss_pred cCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 406 FDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 406 ~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
+| ....||+|.||+.++.|..+ ..|..|.|.+.|.+.
T Consensus 122 -~~----~~~~ISST~IRe~~~~g~~i-~~lVP~~V~~~i~~~ 158 (171)
T 3nd5_A 122 -EE----PYAHVSSSLLKEVLRFGGDV-SDYLPPNIYHALKQK 158 (171)
T ss_dssp -CG----GGTTCCHHHHHHHHHTTCCC-GGGSCHHHHHHHHHC
T ss_pred -Cc----cccccchHHHHHHHHcCCCh-hHhCCHHHHHHHHHh
Confidence 12 23479999999999999875 678999999988764
No 23
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=97.55 E-value=0.0013 Score=63.27 Aligned_cols=172 Identities=17% Similarity=0.195 Sum_probs=100.4
Q ss_pred CeEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCC-CC-CCCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 012433 244 DAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY-TK-ADDVPLSWRMKQHEKVLEDGVLDPETTVVS 320 (464)
Q Consensus 244 ~~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~-tK-~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~ 320 (464)
++|+-|- |-||+|.||..|++.|.+.+ + .+.+++-|.... .| ..-++.+.|++-.+..++. .| .+.+
T Consensus 23 ~~i~i~~GsFdPiH~GHl~li~~a~~~~---~--ld~v~v~~~~~~p~K~~~~~~~~~R~~ml~~a~~~--~~--~v~v- 92 (242)
T 1yum_A 23 KRIGLFGGTFDPVHIGHMRSAVEMAEQF---A--LDELRLLPNARPPHRETPQVSAAQRLAMVERAVAG--VE--RLTV- 92 (242)
T ss_dssp CEEEEEEECCTTCCHHHHHHHHHHHHHH---T--CSEEEEEECCCCGGGSCTTCCHHHHHHHHHHHHTT--CT--TEEE-
T ss_pred ceEEEEEeeCcHhhHHHHHHHHHHHHHc---C--CCEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHhcC--CC--eEEE-
Confidence 3454444 99999999999987653322 1 255777666553 44 3568999999999977762 23 3443
Q ss_pred ecCCCcccCChhHHH-HHHHHHHHcCCc---eeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEE
Q 012433 321 IFPSPMHYAGPTEVQ-WHAKARINAGAN---FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAY 396 (464)
Q Consensus 321 ~lp~~MryAGPREAl-lHAiiRkNyGcT---HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y 396 (464)
.+....-.||.-.+ .=..+++.||.+ .||+|-|-.-=- ..+|+ .++|++.. .++.+.-- |
T Consensus 93 -~~~e~~~~~~sytvdtl~~l~~~~~p~~~~~fI~G~D~l~~l-----~~W~~---~~~i~~~~------~~vv~~R~-~ 156 (242)
T 1yum_A 93 -DPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGL-----PTWHR---WEALLDHC------HIVVLQRP-D 156 (242)
T ss_dssp -CCGGGGSSSSCCHHHHHHHHHHHSCTTCEEEEEEEHHHHTTG-----GGSTT---GGGSTTTC------EEEEEECS-S
T ss_pred -eeeeecCCCCCCHHHHHHHHHHHhCCCCcEEEEEehhHhhhh-----hhhcC---HHHHHhhC------cEEEEECC-C
Confidence 44444445653322 112456778766 688898743211 13443 33455321 11111110 1
Q ss_pred ec------------------------CCCceeec-CCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHH
Q 012433 397 DK------------------------TQGKMAFF-DPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447 (464)
Q Consensus 397 c~------------------------~c~~~~~~-~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~ 447 (464)
.. ..+++... .| ...||+|.||+++++|.. -..|..+.|++.|.+
T Consensus 157 ~~~~~~~e~~~~~~~~~~~~~~~L~~~~~~i~~~~~~-----~~~ISST~IR~~i~~g~~-i~~lVP~~V~~yI~~ 226 (242)
T 1yum_A 157 ADSEPPESLRDLLAARSVADPQALKGPGGQITFVWQT-----PLAVSATQIRALLGAGRS-VRFLVPDAVLNYIEA 226 (242)
T ss_dssp SCCCCCGGGHHHHHHHBCSCGGGCCSSSCCEEEEECC-----CCSCCHHHHHHHHHTTCC-CBTTBCHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHhhccchhhhccCCCeEEEecCC-----CCcCcHHHHHHHHHcCCC-hhHcCCHHHHHHHHH
Confidence 00 11111111 11 247999999999999986 567999999999986
No 24
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=97.49 E-value=0.00019 Score=66.33 Aligned_cols=156 Identities=14% Similarity=0.185 Sum_probs=93.1
Q ss_pred eEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEeccc-CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEec
Q 012433 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLG-GYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIF 322 (464)
Q Consensus 245 ~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~Plv-G~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~l 322 (464)
+|.-|- |-||+|.||..+.+ |++. .+-+++.|.. -..|.+-++.+.|++-.+..+++ .|...+.+.-+
T Consensus 3 ~igi~gGsFdPih~GHl~i~~-----a~~~---~d~v~~~p~~~~~~k~~~~~~~~R~~m~~~a~~~--~~~~~~~v~~~ 72 (177)
T 3h05_A 3 KIAIFGSAFNPPSLGHKSVIE-----SLSH---FDLVLLEPSIAHAWGKNMLDYPIRCKLVDAFIKD--MGLSNVQRSDL 72 (177)
T ss_dssp EEEEEEECCSSCCHHHHHHHT-----TCTT---SSEEEEEECC-------CCCHHHHHHHHHHHHHH--HCCTTEEECCH
T ss_pred EEEEEEeccchhhHHHHHHHH-----HHHH---CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHhc--CCCCcEEEEeh
Confidence 343344 89999999999964 2333 2567777765 24466779999999999998874 34334444433
Q ss_pred CCCcccCC-hhH--HHHHHHHHHHcCCc--eeeecCCCC-CCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEE
Q 012433 323 PSPMHYAG-PTE--VQWHAKARINAGAN--FYIVGRDPA-GMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAY 396 (464)
Q Consensus 323 p~~MryAG-PRE--AllHAiiRkNyGcT--HfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y 396 (464)
.....-.| |.- -.+.. +++.|.-. .||+|-|.. +.. .+| +.++|++.. .++.++
T Consensus 73 E~~l~~~~~~syT~dTl~~-l~~~~p~~~~~~iiG~D~l~~l~------~W~---~~~~l~~~~------~~vv~~---- 132 (177)
T 3h05_A 73 EQALYQPGQSVTTYALLEK-IQEIYPTADITFVIGPDNFFKFA------KFY---KAEEITERW------TVMACP---- 132 (177)
T ss_dssp HHHHC----CCCHHHHHHH-HHHHSTTSEEEEEECHHHHHTGG------GST---THHHHHHHS------EEEECC----
T ss_pred hhhcccCCCCcchHHHHHH-HHHHhcCCCeEEEEecchhhhcc------cch---hHHHHHHhC------CEEEEc----
Confidence 22210122 321 12332 35556444 389999943 322 233 356777653 222221
Q ss_pred ecCCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHH
Q 012433 397 DKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE 447 (464)
Q Consensus 397 c~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~ 447 (464)
..+.||+|.||+++++|+.+ ..+..++|.+.|.+
T Consensus 133 ----------------r~~~iSST~IR~~i~~g~~~-~~lvp~~V~~yI~~ 166 (177)
T 3h05_A 133 ----------------EKVKIRSTDIRNALIEGKDI-STYTTPTVSELLLN 166 (177)
T ss_dssp ----------------CSSCCCHHHHHHHHHHTCCC-TTTSCHHHHHHHHC
T ss_pred ----------------CCCCCcHHHHHHHHHcCCCh-hHhCCHHHHHHHHH
Confidence 14689999999999999864 67889999998875
No 25
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=97.43 E-value=0.0024 Score=59.33 Aligned_cols=151 Identities=13% Similarity=0.052 Sum_probs=95.3
Q ss_pred EEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCC
Q 012433 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSP 325 (464)
Q Consensus 246 VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~ 325 (464)
.+-.=|-||+|.||..++++ |++.. +-|++-|..-+.|..-++.+.|++-.+..++ .+| .+.+..+.
T Consensus 24 ~i~~GsFDPiH~GHl~ii~~----A~~~~---D~Viv~v~~np~K~~~~s~eeR~~mv~~a~~--~~~--~v~V~~~e-- 90 (177)
T 3nbk_A 24 AVCPGSFDPVTLGHVDIFER----AAAQF---DEVVVAILVNPAKTGMFDLDERIAMVKESTT--HLP--NLRVQVGH-- 90 (177)
T ss_dssp EEEEECCTTCCHHHHHHHHH----HHHHS---SEEEEEECCCTTSCCSSCHHHHHHHHHHHCT--TCT--TEEEEECC--
T ss_pred EEEEEeeCCCCHHHHHHHHH----HHHHC---CEEEEEEcCCCCCCCCCCHHHHHHHHHHHhC--CCC--CEEEEecC--
Confidence 33334999999999999874 45553 6688877776778888999999999988776 234 34444433
Q ss_pred cccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhH--HhhhCCCCCcceeeEeceEEEecCCCce
Q 012433 326 MHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKK--VLSMAPGLERLNILPFKVAAYDKTQGKM 403 (464)
Q Consensus 326 MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~--i~~~~~~~~~i~i~~f~~~~Yc~~c~~~ 403 (464)
| +=.=..+.+|++.||-|=+-.. ||- |+.|- +-... .+++.+.+ ..
T Consensus 91 ----~-----l~vd~~~~~~a~~ivrGlr~~~--------Dfe--ye~~~a~~nr~l---~~ietvfl------~~---- 138 (177)
T 3nbk_A 91 ----G-----LVVDFVRSCGMTAIVKGLRTGT--------DFE--YELQMAQMNKHI---AGVDTFFV------AT---- 138 (177)
T ss_dssp ----S-----CHHHHHHHTTCCEEEEEECTTC--------CHH--HHHHHHHHHHHH---HCCEEEEE------EC----
T ss_pred ----c-----hHHHHHHHcCCCEEEECCCchh--------HHH--HHHHHHHHHHhc---CCCceEEE------eC----
Confidence 3 1122335589998886633111 221 11110 10011 13443322 11
Q ss_pred eecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHh
Q 012433 404 AFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYY 449 (464)
Q Consensus 404 ~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~ 449 (464)
......||+|.||++++.|.. ...|..+.|++.|.+-+
T Consensus 139 -------~~~~~~ISST~IRe~~~~ggd-v~~lVP~~V~~~l~~~~ 176 (177)
T 3nbk_A 139 -------APRYSFVSSSLAKEVAMLGGD-VSELLPEPVNRRLRDRL 176 (177)
T ss_dssp -------CGGGSSCCHHHHHHHHHTTCC-CGGGSCHHHHHHHHHHH
T ss_pred -------CCcccccchHHHHHHHHcCCC-hhHhCCHHHHHHHHHHh
Confidence 123457999999999999976 46799999999887654
No 26
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=97.24 E-value=0.00098 Score=67.59 Aligned_cols=161 Identities=17% Similarity=0.152 Sum_probs=96.8
Q ss_pred eEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEe----c--ccCCCC--CCCCChHHHHHHHHHHHHcCCCCCCc
Q 012433 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH----P--LGGYTK--ADDVPLSWRMKQHEKVLEDGVLDPET 316 (464)
Q Consensus 245 ~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~----P--lvG~tK--~~Di~~~~Rvr~ye~ll~~~y~p~~~ 316 (464)
.|++.=+-+++|+||.+|++.|.+.|.+.+. ..+++. | ++...+ .--.+.+.|++-.+.+ --+.
T Consensus 17 ~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~--~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~------gVD~ 88 (338)
T 2x0k_A 17 SAVTIGVFDGVHRGHQKLINATVEKAREVGA--KAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESF------GIDG 88 (338)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHHHHTC--EEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHT------TCSE
T ss_pred eEEEEEeCCcccHHHHHHHHHHHHHHHHcCC--cEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhc------CCCE
Confidence 6777889999999999999988777766541 223443 2 333222 2245778888755542 2233
Q ss_pred eEEEecCCCcccCC--hhHHHHHHHHHHHcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEece
Q 012433 317 TVVSIFPSPMHYAG--PTEVQWHAKARINAGANFYIVGRDPA-GMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKV 393 (464)
Q Consensus 317 ~~l~~lp~~MryAG--PREAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~ 393 (464)
++ ++|....++. | |.....++.+.+++.+++||-|+. |-+ ..++. +.+..+... |++++..+.
T Consensus 89 v~--v~~F~~~~a~ls~-e~Fi~~il~~~l~~~~ivvG~Df~FG~~------r~g~~----~~L~~~~~~-g~~V~~v~~ 154 (338)
T 2x0k_A 89 VL--VIDFTRELSGTSP-EKYVEFLLEDTLHASHVVVGANFTFGEN------AAGTA----DSLRQICQS-RLTVDVIDL 154 (338)
T ss_dssp EE--EECTTTSSSSCCH-HHHHHHCCCCCTCEEEEEEETTCEESGG------GCEEH----HHHHHHTTT-TSEEEEECC
T ss_pred EE--EccccHHHHhCCH-HHHHHHHHHhhcCCCEEEEeecCCCCCC------CCCCH----HHHHHHhcC-CeEEEEECc
Confidence 33 4555555553 4 444555677889999999999975 433 22222 222333233 666655533
Q ss_pred EEEecCCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhh
Q 012433 394 AAYDKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYD 450 (464)
Q Consensus 394 ~~Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~ 450 (464)
.-+ +-..||.|.||++|++|. -.++.+.|-+.|.
T Consensus 155 ~~~----------------~~~~ISST~IR~~L~~G~-------i~~a~~lLGrpy~ 188 (338)
T 2x0k_A 155 LDD----------------EGVRISSTTVREFLSEGD-------VARANWALGRHFY 188 (338)
T ss_dssp CEE----------------TTEECSHHHHHHHHHTTC-------HHHHHHHHTSCCE
T ss_pred Eec----------------CCcccccchHHHHHhcCc-------HHHHHHhcceeeE
Confidence 211 124799999999999996 2344444544443
No 27
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=97.22 E-value=0.0039 Score=61.66 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=91.3
Q ss_pred EEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCC---CCCCCCChHHHHHHHHHHHHcCCCCCCceEEEe
Q 012433 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY---TKADDVPLSWRMKQHEKVLEDGVLDPETTVVSI 321 (464)
Q Consensus 246 VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~---tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~ 321 (464)
+.-|= |-||+|.||..|+++ |++.. +-++|-+.... +|..-++.+.|++-.+..+++.-+|..++.+..
T Consensus 9 ~~i~~GtFdP~h~GHl~~~~~----a~~~~---d~~~~~v~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~~~~~~~ 81 (352)
T 2qjt_B 9 ISVFIGRFQPFHKGHLHNIII----ALQNS---KKVIINIGSCFNTPNIKNPFSFEQRKQMIESDLQVAGIDLDTVVIEP 81 (352)
T ss_dssp EEEEEECCTTCCHHHHHHHHH----HHHSE---EEEEEEEEEESCCCCSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred EEEEEEecCCCChHHHHHHHH----HHHhC---CcEEEEECCCCCCcccCCCCCHHHHHHHHHHHhccccCccceEEEEE
Confidence 43344 899999999999874 45553 44545444332 455668999999999998875445656666655
Q ss_pred cCCCcccCChhHHHHHHHHHHHc------CCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEE
Q 012433 322 FPSPMHYAGPTEVQWHAKARINA------GANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAA 395 (464)
Q Consensus 322 lp~~MryAGPREAllHAiiRkNy------GcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~ 395 (464)
++... + + ..+|...+++.. .+..+++|+.... . ...+...+. ...+..
T Consensus 82 ~~d~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~--------------~-~~~~~~~~~---~~~~~~---- 135 (352)
T 2qjt_B 82 LADYF-Y-Q--EQKWQDELRKNVYKHAKNNNSIAIVGHIKDS--------------S-SYYIRSFPE---WDYIGV---- 135 (352)
T ss_dssp EECCT-T-C--HHHHHHHHHHHHTTTSCSSCCEEECCBSSSS--------------H-HHHHHHCTT---SEECCB----
T ss_pred cCCCc-C-C--hHHHHHHHHHHHHHhcccCCeEEEEcCCCCc--------------c-hhhhhcCCc---cceecc----
Confidence 44322 1 2 346766655432 2345555554210 0 001111110 010000
Q ss_pred EecCCCceeecCCCCCcceeecCHHHHHHHHHC-CCC-C-CCCccch-HHHHHHHHHhhc
Q 012433 396 YDKTQGKMAFFDPSRAKDFLFISGTKMRTLARS-KEN-P-PDGFMCP-GGWKVLVEYYDS 451 (464)
Q Consensus 396 Yc~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~-G~~-p-P~~f~rP-eV~~iL~~~~~~ 451 (464)
+ ....||+|.||++++. |.. . -..|..+ .|++.|.++++.
T Consensus 136 ------------~----~~~~iSST~IR~~~~~~g~~~~~i~~lvP~~~va~~I~~w~~~ 179 (352)
T 2qjt_B 136 ------------D----NYKNFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKFMDT 179 (352)
T ss_dssp ------------C----CTTCCCHHHHHHHHHTTCCCGGGCSCSSTTSHHHHHHHHHTTS
T ss_pred ------------C----CCCCCCchHHHHHHhccCcccchhhhcCChHHHHHHHHHHhcC
Confidence 0 2235999999999997 721 1 3446788 899999988754
No 28
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=97.19 E-value=0.0011 Score=65.24 Aligned_cols=152 Identities=15% Similarity=0.122 Sum_probs=83.9
Q ss_pred EEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEE-ecccC--CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecC
Q 012433 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL-HPLGG--YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFP 323 (464)
Q Consensus 247 vafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll-~PlvG--~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp 323 (464)
+..=|-||+|+||..|++.| ++.. +-+.+ .+--. .+|..-++.+.|++-.+..+.+ ++.+++.+-++.
T Consensus 11 i~~G~FdP~H~GH~~li~~a----~~~~---d~v~v~v~~~~~p~~~~~~~~~~~R~~m~~~~~~~--~~~~~~~~i~~~ 81 (341)
T 2qjo_A 11 IYIGRFQPFHLGHLRTLNLA----LEKA---EQVIIILGSHRVAADTRNPWRSPERMAMIEACLSP--QILKRVHFLTVR 81 (341)
T ss_dssp EEEECCTTCCHHHHHHHHHH----HHHE---EEEEEEEEEETCCCCSSSCSCHHHHHHHHHTTSCH--HHHTTEEEEEEE
T ss_pred EEEEEeCCCCHHHHHHHHHH----HHhC---CeEEEEECCcccCCCCCCCCCHHHHHHHHHHHhhh--ccCCeEEEEECC
Confidence 33348999999999998754 4442 22332 22221 1344568999998866654431 121334443333
Q ss_pred CCcccCChhHHHHHHHHH---HHc--C-CceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEe
Q 012433 324 SPMHYAGPTEVQWHAKAR---INA--G-ANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYD 397 (464)
Q Consensus 324 ~~MryAGPREAllHAiiR---kNy--G-cTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc 397 (464)
-.. ++ ...|+.-++ +.+ | |+..++|.|..+. ......++ ++.++.+
T Consensus 82 d~~-~~---~~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~~---------------~~~~~~~~---~~~~~~~------ 133 (341)
T 2qjo_A 82 DWL-YS---DNLWLAAVQQQVLKITGGSNSVVVLGHRKDAS---------------SYYLNLFP---QWDYLET------ 133 (341)
T ss_dssp CCT-TC---HHHHHHHHHHHHHHHHTTCSCEEEEECCCSGG---------------GGGGGSCT---TSEEEEC------
T ss_pred CCc-CC---hHHHHHHHHHHhHHhcCCCceEEEEcCCCCCC---------------hHHHHhcc---ccceeec------
Confidence 221 11 123333221 222 2 8899999886321 11111122 3444333
Q ss_pred cCCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCC-ccchHHHHHHHHHh
Q 012433 398 KTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDG-FMCPGGWKVLVEYY 449 (464)
Q Consensus 398 ~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~-f~rPeV~~iL~~~~ 449 (464)
| ....||+|.||+++++|....-| +..+.|++.|.++.
T Consensus 134 ----------~----~~~~iSST~IR~~l~~g~~~~~~~lvp~~v~~~i~~~~ 172 (341)
T 2qjo_A 134 ----------G----HYPDFSSTAIRGAYFEGKEGDYLDKVPPAIADYLQTFQ 172 (341)
T ss_dssp ----------C----CCTTCCHHHHHHHHHHTCGGGTTTTSCHHHHHHHHHHT
T ss_pred ----------c----cCCCCCcHHHHHHHHcCCCcchhhhCCHHHHHHHHHhc
Confidence 1 22469999999999999864311 67889998887764
No 29
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=97.15 E-value=0.004 Score=57.07 Aligned_cols=168 Identities=12% Similarity=0.144 Sum_probs=91.4
Q ss_pred ecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCC-CC--CCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCc
Q 012433 250 QLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY-TK--ADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPM 326 (464)
Q Consensus 250 QTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~-tK--~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~M 326 (464)
=|-||+|.||..|++.|.+. .+ .+-+++.|.... .| ..-++.+.|++-.+..+++ +| .+.++ ....
T Consensus 9 GsFdp~H~GH~~l~~~a~~~---~~--~d~v~~~~~~~~~~k~~~~~~~~~~R~~m~~~a~~~--~~--~v~v~--~~e~ 77 (189)
T 2h29_A 9 GQFNPIHTAHMIVASEVFHE---LQ--PDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDE--LG--FGDIC--DDEI 77 (189)
T ss_dssp ECCTTCCHHHHHHHHHHHHH---HC--CSEEEEEECSBCTTSCCCSSCCCHHHHHHHHHHHHH--HT--CCEEC--CHHH
T ss_pred ecCCcccHHHHHHHHHHHHH---cC--CCEEEEEECCCCCCCcCCCCCCHHHHHHHHHHHHcC--CC--CEEEe--hHHh
Confidence 38999999999998765332 12 234554554332 34 3357999999999987763 23 23333 2222
Q ss_pred ccCChhHH--HHHHHHHHHcCCc--eeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEec-CCC
Q 012433 327 HYAGPTEV--QWHAKARINAGAN--FYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDK-TQG 401 (464)
Q Consensus 327 ryAGPREA--llHAiiRkNyGcT--HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~-~c~ 401 (464)
.-.||.-. .+.. +++.|.-+ .||+|-|...=- ..+| +.++|+... .++.+..--|.. ...
T Consensus 78 ~~~~~syt~dtl~~-l~~~~p~~~~~~i~G~D~~~~~-----~~W~---~~~~i~~~~------~~~v~~R~~~~~~~~~ 142 (189)
T 2h29_A 78 KRGGQSYTYDTIKA-FKEQHKDSELYFVIGTDQYNQL-----EKWY---QIEYLKEMV------TFVVVNRDKNSQNVEN 142 (189)
T ss_dssp HHCSBCCHHHHHHH-HHHHSTTEEEEEEEEHHHHTTG-----GGST---THHHHHHHC------EEEEECCSSSCCCCCT
T ss_pred cCCCCCCHHHHHHH-HHHHCCCCcEEEEEecchhhhh-----cccc---CHHHHHhhC------cEEEEECCCCccccCC
Confidence 22344211 2222 34445332 788998854311 1233 235666532 111111100000 011
Q ss_pred ceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHH
Q 012433 402 KMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEY 448 (464)
Q Consensus 402 ~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~ 448 (464)
++.... .. ...||+|.||+++++|.. -..|..+.|++.|.+.
T Consensus 143 ~i~~~~-~~---~~~ISST~IR~~i~~g~~-~~~lvP~~V~~yI~~~ 184 (189)
T 2h29_A 143 AMIAIQ-IP---RVDISSTMIRQRVSEGKS-IQVLVPKSVENYIKGE 184 (189)
T ss_dssp TSEEEC-CC---CBCCCHHHHHHHHHTTCC-CBTTBCHHHHHHHHHH
T ss_pred cEEEEc-CC---CCccCHHHHHHHHHcCCC-hhhcCCHHHHHHHHHh
Confidence 221111 11 257999999999999986 3568899999998763
No 30
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=97.10 E-value=0.0036 Score=60.43 Aligned_cols=189 Identities=16% Similarity=0.062 Sum_probs=96.1
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCC-CCcEEEecccC-CCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCccc
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQ-NPILLLHPLGG-YTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHY 328 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~-~~~Lll~PlvG-~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~Mry 328 (464)
|-||+|.||..|++.|++.+-+.+.. .-++++.|.-. ..|..-++.+.|++-.+..+++ .| .+.+ -++...-
T Consensus 14 sFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~--~~--~~~v--~~~E~~~ 87 (252)
T 1nup_A 14 SFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQT--SD--WIRV--DPWESEQ 87 (252)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGG--CS--SEEE--CCHHHHS
T ss_pred cCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcC--CC--ceEe--ehHHhcC
Confidence 99999999999998765544332100 00034455432 3455678999999999988873 23 3333 3444444
Q ss_pred CChhHH--HHHHHHHHHcC-----------------------CceeeecCCCC-CCCCCCCCCCCCCCchhhHHhhhCCC
Q 012433 329 AGPTEV--QWHAKARINAG-----------------------ANFYIVGRDPA-GMGHPVEKRDLYDADHGKKVLSMAPG 382 (464)
Q Consensus 329 AGPREA--llHAiiRkNyG-----------------------cTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~ 382 (464)
.||.-. .+.. +++-|| --.||+|-|-. ....+ ..+| .++.++|++.+.
T Consensus 88 ~~~syTidtL~~-l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~fiiGaD~l~~l~~p---~~W~-~~~~~~i~~~~~- 161 (252)
T 1nup_A 88 AQWMETVKVLRH-HHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTP---NLWK-DAHIQEIVEKFG- 161 (252)
T ss_dssp SSCCCHHHHHHH-HHHHHC--------------------CCCEEEEEEEHHHHHHTTST---TTSC-HHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHH-HHHHHhhccccccccccccccccCCCCCceEEEEEecchHhHCCCc---CccC-cchHHHHHhhCc-
Confidence 555322 1111 333342 12466676631 11000 0233 234677776431
Q ss_pred CCcceeeE-----eceEEEec-----CCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHH--Hhh
Q 012433 383 LERLNILP-----FKVAAYDK-----TQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVE--YYD 450 (464)
Q Consensus 383 ~~~i~i~~-----f~~~~Yc~-----~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~--~~~ 450 (464)
|-++. ...+.|.. ..+.+.... ......||+|.||+++++|..+ ..+..+.|.+.|.+ .|+
T Consensus 162 ---lvv~~R~g~~~~~~~~~~~~l~~~~~~i~~~~---~~~~~~ISST~IR~~~~~g~~i-~~lvP~~V~~yI~~~~LY~ 234 (252)
T 1nup_A 162 ---LVCVGRVSHDPKGYIAESPILRMHQHNIHLAK---EPVQNEISATYIRRALGQGQSV-KYLIPDAVITYIKDHGLYT 234 (252)
T ss_dssp ---EEEECCTTCCHHHHHHHCHHHHHTGGGEEEEC---CCSCCCCCHHHHHHHHHTTCCC-BTTBCHHHHHHHHHTTCSC
T ss_pred ---EEEEECCCCChHHhhhhHHHHHhcCCCEEEEc---CCCCCccCHHHHHHHHHcCCCc-hhcCCHHHHHHHHHcCCcC
Confidence 11111 00000000 011111111 1123579999999999999865 46889999999987 466
Q ss_pred ccCCCCCC
Q 012433 451 SLTPADNG 458 (464)
Q Consensus 451 ~~~~~~~~ 458 (464)
.....+|.
T Consensus 235 ~~~~~~~~ 242 (252)
T 1nup_A 235 KGSTWKGK 242 (252)
T ss_dssp C-------
T ss_pred CCccCCCc
Confidence 54443433
No 31
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=96.82 E-value=0.0072 Score=52.01 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=52.5
Q ss_pred eEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccC-----CCCCCCCChHHHHHHHHHHHHcCCCCCCceEE
Q 012433 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG-----YTKADDVPLSWRMKQHEKVLEDGVLDPETTVV 319 (464)
Q Consensus 245 ~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG-----~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l 319 (464)
.++..=+-||+|+||..|++. |.+.+ +-+.+-+... ..|..-++.+.|++-.++ +. .. +.+++
T Consensus 3 ~~~~~G~FDp~H~GH~~li~~----a~~~~---~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~-~~--~~--d~v~~ 70 (132)
T 2b7l_A 3 RVITYGTYDLLHYGHIELLRR----AREMG---DYLIVALSTDEFNQIKHKKSYYDYEQRKMMLES-IR--YV--DLVIP 70 (132)
T ss_dssp EEEEEECCCSCCHHHHHHHHH----HHHTS---SEEEEEEECHHHHHHTTCCCSSCHHHHHHHHHT-BT--TC--CEEEE
T ss_pred EEEEeeecCcCCHHHHHHHHH----HHHhC---CcEEEEEECCHHHhccCCCCCCCHHHHHHHHHh-cC--CC--CEEEE
Confidence 345555899999999999874 45553 3333333221 123335788999986663 22 22 34443
Q ss_pred EecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCC
Q 012433 320 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (464)
Q Consensus 320 ~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHA 356 (464)
. + .|.+-+-. + +.++++++|+|.|..
T Consensus 71 ~-----~---~~~~~~~~--~-~~~~~~~iv~G~D~~ 96 (132)
T 2b7l_A 71 E-----K---GWGQKEDD--V-EKFDVDVFVMGHDWE 96 (132)
T ss_dssp E-----C---CGGGHHHH--H-HHTTCCEEEECGGGT
T ss_pred C-----C---ChHHHHHH--H-HHcCCCEEEECCCCc
Confidence 1 1 12222222 3 568999999999974
No 32
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=96.51 E-value=0.0093 Score=60.99 Aligned_cols=178 Identities=20% Similarity=0.170 Sum_probs=94.5
Q ss_pred CCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEE-e-cc--cCCCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 012433 243 ADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL-H-PL--GGYTKADDVPLSWRMKQHEKVLEDGVLDPETTV 318 (464)
Q Consensus 243 w~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll-~-Pl--vG~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~ 318 (464)
=++|+++=.-||+|+||.+|++.+. +.+ ..+.| . +. +....+--++.+.|.+..+.. | -|.
T Consensus 52 ~~~v~~lG~FDg~H~GHq~lI~~a~----~~~---~~~~Vms~~~~~vqrg~~~l~~~~~R~~~~~~~---G---vD~-- 116 (357)
T 3gmi_A 52 DKIVCDFTEYNPLHKGHKYALEKGK----EHG---IFISVLPGPLERSGRGIPYFLNRYIRAEMAIRA---G---ADI-- 116 (357)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHH----TSS---EEEEEECCTTSBCTTSSBCSSCHHHHHHHHHHH---T---CSE--
T ss_pred CCEEEEEEecCccCHHHHHHHHHHH----HcC---CeEEEEcCchHHhcCCCCcCCCHHHHHHHHHHC---C---CCE--
Confidence 3678999999999999999997543 321 11212 1 12 322233446667787755543 2 233
Q ss_pred EEecCCCcccCChhHHHHHH-HHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceee-------E
Q 012433 319 VSIFPSPMHYAGPTEVQWHA-KARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNIL-------P 390 (464)
Q Consensus 319 l~~lp~~MryAGPREAllHA-iiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~-------~ 390 (464)
+-.+|..+. -.|-|-+-.| .+-+.+||.+++||- +... +|+. -++. .+ .+ ..+.+. .
T Consensus 117 vielpF~~~-~s~~~Fv~~~v~ll~~l~~~~iv~G~-~~~~-------~~~~--~~~~-i~--~~-~~~~~kp~~~~g~e 181 (357)
T 3gmi_A 117 VVEGPPMGI-MGSGQYMRCLIKMFYSLGAEIIPRGY-IPEK-------TMEK--VIDC-IN--KG-YHIQVKPYKIICIE 181 (357)
T ss_dssp EEECCCGGG-SCHHHHHHHHHHHHHHHTCCEEEEEE-CCCH-------HHHH--HHHH-HH--TT-CCEEEETTEEEETT
T ss_pred EEEcCchhh-CCHHHHHHHHHHHHHHcCCCEEEECC-CCch-------hHHH--HHHH-Hh--cc-cccccccchhccCc
Confidence 334565433 4666643332 233689999999998 4321 2211 1111 11 11 011111 1
Q ss_pred ece-------------EEEecCCCceee--cCCCCCcc---ee-ecCHHHHHHHHHCCC-CCCCCccchHHHHHHHHHhh
Q 012433 391 FKV-------------AAYDKTQGKMAF--FDPSRAKD---FL-FISGTKMRTLARSKE-NPPDGFMCPGGWKVLVEYYD 450 (464)
Q Consensus 391 f~~-------------~~Yc~~c~~~~~--~~ph~~~~---~~-~iSGT~vR~~L~~G~-~pP~~f~rPeV~~iL~~~~~ 450 (464)
+.+ +-||+....+.+ ..++-.-. +. .+|||.||+++++|. ..=.-|+.+.+++.|.+.++
T Consensus 182 y~~~~~~~l~~pn~il~~y~kai~~~~~~~~~~~i~~~~i~R~~~~SAS~IR~~i~~g~~~~~~~lVP~~t~~~l~~~~~ 261 (357)
T 3gmi_A 182 TGEILGEKLNIDNYVIASMSQMIYKLNREGLKFNPKFVFVKRLEGISGTKIREAIFSGKFEDIKNMLPKTTLSILKELYD 261 (357)
T ss_dssp TCCEEESCCCGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEECSCCCCHHHHHHHHHTTCGGGTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHhCcCcCCCCCeEEEecCCCcccHHHHHHHHHcCChhHHHhcCChHHHHHHHHHHh
Confidence 222 112322222220 01110000 10 599999999999996 33455889999999998765
No 33
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=96.51 E-value=0.0096 Score=58.59 Aligned_cols=187 Identities=17% Similarity=0.090 Sum_probs=100.5
Q ss_pred ecCCCCchhhHHHHHHHHHHHHHhcC-CCCcEEEeccc-CCCCCCCCChHHHHHHHHHHHHcCCCCCCceEEEecCCCcc
Q 012433 250 QLRNPVHNGHALLMTDTRRRLLEMGY-QNPILLLHPLG-GYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMH 327 (464)
Q Consensus 250 QTRNPlHRaHe~l~k~~~~~ale~g~-~~~~Lll~Plv-G~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~~lp~~Mr 327 (464)
=|-||+|.||..|++.|++.+-..+. ..-++++.|.- ...|..-++.+.|++-.+.+++. .| . +.+.+....
T Consensus 15 GsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~K~~l~s~~~R~~ml~~ai~~--~~--~--~~v~~~E~~ 88 (279)
T 1kqn_A 15 GSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATKN--SK--W--VEVDTWESL 88 (279)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCCTTCCCHHHHHHHHHHHTTT--CS--S--EEECCTGGG
T ss_pred eeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCccccCCCCHHHHHHHHHHHhcC--CC--c--EEEeccccc
Confidence 39999999999999876544322110 00011344532 23455678999999988877762 23 3 334566666
Q ss_pred cCChhHHH--HHHHHHHHcC------------------------------------------CceeeecCCCCC-CCCCC
Q 012433 328 YAGPTEVQ--WHAKARINAG------------------------------------------ANFYIVGRDPAG-MGHPV 362 (464)
Q Consensus 328 yAGPREAl--lHAiiRkNyG------------------------------------------cTHfIVGRDHAG-vG~~~ 362 (464)
-.|+...+ +.. +++.|| --.||+|-|-.- ...+
T Consensus 89 ~~~~syTidtL~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~GaD~l~~~~~p- 166 (279)
T 1kqn_A 89 QKEWKETLKVLRH-HQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLESFAVP- 166 (279)
T ss_dssp CSSCCCHHHHHHH-HHHHHTC--------------------------------------CCCEEEEEEEHHHHHHTTST-
T ss_pred cCCCCcHHHHHHH-HHHHHhhcccccccccccccccccccccccccccccccccccCCCCCccEEEEEehhhHhhCcCc-
Confidence 66764322 221 233331 125777776431 1000
Q ss_pred CCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEe------------cCCCceeec-CCCCCcceeecCHHHHHHHHHCC
Q 012433 363 EKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYD------------KTQGKMAFF-DPSRAKDFLFISGTKMRTLARSK 429 (464)
Q Consensus 363 ~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc------------~~c~~~~~~-~ph~~~~~~~iSGT~vR~~L~~G 429 (464)
..+| .++.++|++.+. |-++. --.|. +-.+.+... .+ -...||+|+||+++++|
T Consensus 167 --~~W~-~~~~e~il~~~~----lvv~~--R~g~~~~~~~~~~~~l~~~~~~i~~v~~~----~~~~ISST~IR~~l~~g 233 (279)
T 1kqn_A 167 --NLWK-SEDITQIVANYG----LICVT--RAGNDAQKFIYESDVLWKHRSNIHVVNEW----IANDISSTKIRRALRRG 233 (279)
T ss_dssp --TTSC-HHHHHHHHHHTC----EEEEE--SCHHHHHHHHHTCHHHHHTGGGEEEEECC----SCCCCCHHHHHHHHHTT
T ss_pred --cccC-cchHHHHHhhCc----EEEEe--CCCCChHhhhhhHHHHhhcCCcEEEECCC----CCCccCHHHHHHHHHcC
Confidence 0222 234677887542 22221 00000 001111111 11 13579999999999999
Q ss_pred CCCCCCccchHHHHHHHHH--hhccCCCCCC
Q 012433 430 ENPPDGFMCPGGWKVLVEY--YDSLTPADNG 458 (464)
Q Consensus 430 ~~pP~~f~rPeV~~iL~~~--~~~~~~~~~~ 458 (464)
+.+ ..+..++|.+-|.+. |+.-...+|.
T Consensus 234 ~si-~~lvP~~V~~YI~~~~LY~~~~~~~~~ 263 (279)
T 1kqn_A 234 QSI-RYLVPDLVQEYIEKHNLYSSESEDRNA 263 (279)
T ss_dssp CCC-BTTBCHHHHHHHHHHTCCSHHHHTTTT
T ss_pred CCh-hhcCCHHHHHHHHHcCCcCCCcccCcc
Confidence 865 568889999999873 5543333443
No 34
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=96.37 E-value=0.026 Score=56.03 Aligned_cols=151 Identities=16% Similarity=0.141 Sum_probs=85.1
Q ss_pred EEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEe----c-ccCCC-CCCCCChHHHHHHHHHHHHcCCCCCCceEE
Q 012433 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH----P-LGGYT-KADDVPLSWRMKQHEKVLEDGVLDPETTVV 319 (464)
Q Consensus 246 VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~----P-lvG~t-K~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l 319 (464)
|++.=+-+.+|+||..|+++|.+.|.+.+. ..+++. | ++... ..--.+.+.|++..++ +- .++
T Consensus 2 vvtiG~FDgvH~GH~~ll~~a~~~a~~~~~--~~vVvtFdphP~~l~~~~~~~l~~~~eR~~ll~~------lg--~~~- 70 (293)
T 1mrz_A 2 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKD--DSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSR------YA--RTV- 70 (293)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHHHHTC--CCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTT------TS--CEE-
T ss_pred EEEEeeCccccHHHHHHHHHHHHHHHHcCC--eEEEEEecCCHHHhCCCCCCCCCCHHHHHHHHHh------CC--CEE-
Confidence 455567889999999999988777766642 224443 3 33322 1225677888874432 22 222
Q ss_pred EecCCCcccC--ChhHHHHHHHHHHHcCCceeeecCCCC-CCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEE
Q 012433 320 SIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAY 396 (464)
Q Consensus 320 ~~lp~~MryA--GPREAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Y 396 (464)
++|. ..++ .| |.....++ +++.+++||-|+. |-+ .-++ .. .+.. .|++++..+..-
T Consensus 71 -v~~F-~~~a~ls~-~~Fi~~il---l~~~~iVvG~Df~fG~~------~~g~---~~-~L~~----~G~~V~~v~~~~- 129 (293)
T 1mrz_A 71 -VLDF-FRIKDLTP-EGFVERYL---SGVSAVVVGRDFRFGKN------ASGN---AS-FLRK----KGVEVYEIEDVV- 129 (293)
T ss_dssp -EECH-HHHTTCCH-HHHHHHHC---TTCCEEEEETTCCBSGG------GCBC---HH-HHHH----TTCEEEEECCCE-
T ss_pred -EEEh-HHhhcCCH-HHHHHHHh---cCCCEEEECCCCCCCCC------CCCC---HH-HHHh----CCCEEEEECCEE-
Confidence 3343 2233 34 44444444 9999999999975 322 1111 12 2222 244554432210
Q ss_pred ecCCCceeecCCCCCcceeecCHHHHHHHHHCCCCCCCCccchHHHHHHHHHhh
Q 012433 397 DKTQGKMAFFDPSRAKDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYD 450 (464)
Q Consensus 397 c~~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~~pP~~f~rPeV~~iL~~~~~ 450 (464)
.+-..+|.|.||++|++|..- ++.+.|-+.|.
T Consensus 130 ---------------~~~~~iSST~IR~~L~~G~i~-------~a~~lLGr~y~ 161 (293)
T 1mrz_A 130 ---------------VQGKRVSSSLIRNLVQEGRVE-------EIPAYLGRYFE 161 (293)
T ss_dssp ---------------ETTEECCHHHHHHHHHTTCTT-------TTHHHHSSCCE
T ss_pred ---------------eCCccccHhHHHHHHhcCcHH-------HHhhhcCCCeE
Confidence 012369999999999999632 44455544443
No 35
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.12 E-value=0.01 Score=59.51 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=53.3
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCC------C----CCCCChHHHHHHHHHHHHcCCCCCCceEEE
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT------K----ADDVPLSWRMKQHEKVLEDGVLDPETTVVS 320 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~t------K----~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l~ 320 (464)
|-||+|.||..++++ |++. ++-|+|-|..-.. | ..-++.+.|++-.+..++ .+|. ++.+.
T Consensus 10 tFdP~h~GHl~~~~~----a~~~---~d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~--~~~~-~~~v~ 79 (365)
T 1lw7_A 10 KFYPVHTGHINMIYE----AFSK---VDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFK--YQKN-QIFIH 79 (365)
T ss_dssp CCSSCCHHHHHHHHH----HHTT---CSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTS--TTTT-TEEEE
T ss_pred eeCCCCHHHHHHHHH----HHHH---CCEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhh--cCCC-cEEEE
Confidence 899999999999864 4555 3668777765543 1 224999999999988876 3443 13333
Q ss_pred ec---CCCcccC-Ch--hHHHHHHHHHH-HcCCce
Q 012433 321 IF---PSPMHYA-GP--TEVQWHAKARI-NAGANF 348 (464)
Q Consensus 321 ~l---p~~MryA-GP--REAllHAiiRk-NyGcTH 348 (464)
.+ +.+. |+ += .+..+..+++. .+.++.
T Consensus 80 ~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~ 113 (365)
T 1lw7_A 80 HLVEDGIPS-YPNGWQSWSEAVKTLFHEKHFEPSI 113 (365)
T ss_dssp EEECSSSCC-TTSCHHHHHHHHHHHHHHTTCCCSE
T ss_pred EeccCCCCC-CchHHHHHHHHHHHHhhccCCCCcE
Confidence 22 1111 21 00 34556677775 345553
No 36
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=95.78 E-value=0.037 Score=48.70 Aligned_cols=132 Identities=13% Similarity=0.140 Sum_probs=60.2
Q ss_pred CeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccC-----CCCCCCCChHHHHHHHHHHHHcCCCCCCceE
Q 012433 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG-----YTKADDVPLSWRMKQHEKVLEDGVLDPETTV 318 (464)
Q Consensus 244 ~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG-----~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~ 318 (464)
++|++.=+-||+|+||..|++. |.+.+ +-+.+-.... ..+.--.+.+.|++..+.+ + .-+.++
T Consensus 3 ~~v~~~G~FD~vH~GH~~li~~----a~~~~---~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~---~--~vd~v~ 70 (143)
T 3glv_A 3 IRVMATGVFDILHLGHIHYLKE----SKKLG---DELVVVVARDSTARNNGKIPIFDENSRLALISEL---K--VVDRAI 70 (143)
T ss_dssp CEEEEEECCSSCCHHHHHHHHH----HHTTS---SEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTB---T--TCSEEE
T ss_pred eEEEEEeecCCCCHHHHHHHHH----HHHhC---CCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhc---C--CCCEEE
Confidence 5677777999999999999874 45553 2233311111 1233457888898855431 1 123343
Q ss_pred EEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCCCCCCCCCCCCCCchhhHHhhhCCCCCcceeeEeceEEEec
Q 012433 319 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDK 398 (464)
Q Consensus 319 l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~~f~~~~Yc~ 398 (464)
+. -|.+- .. ++ +.+|+.++++|-|+. |+..+-++....+ +. .+++++..
T Consensus 71 ~~---------~~~~f-~~-~~-~~l~~~~iv~G~d~~-----------f~~~~l~~~~~~~-g~-~v~vv~~~------ 119 (143)
T 3glv_A 71 LG---------HEGDM-MK-TV-IEVKPDIITLGYDQK-----------FDEAELQSKINKL-GI-TVKIVRIS------ 119 (143)
T ss_dssp EC---------CTTCH-HH-HH-HHHCCSEEEECTTCH-----------HHHHHHHHHHHHH-TC-CCEEEECC------
T ss_pred Ec---------CchhH-HH-HH-HhcCCCEEEECCCCC-----------CCHHHHHHHHHHc-CC-eEEEEEee------
Confidence 31 23332 22 33 579999999998842 2222333333332 22 23444430
Q ss_pred CCCceeecCCCCCcceeecCHHHHHHHHHCCC
Q 012433 399 TQGKMAFFDPSRAKDFLFISGTKMRTLARSKE 430 (464)
Q Consensus 399 ~c~~~~~~~ph~~~~~~~iSGT~vR~~L~~G~ 430 (464)
.. . -..+|.|.||++|.++.
T Consensus 120 --------~~-~---~~~iSST~IR~~i~~~~ 139 (143)
T 3glv_A 120 --------KY-D---GQLNSSSSVRKKIMELI 139 (143)
T ss_dssp --------CC-C--------------------
T ss_pred --------cc-C---CCcCCHHHHHHHHHHHh
Confidence 00 1 23699999999998753
No 37
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=95.12 E-value=0.18 Score=42.81 Aligned_cols=89 Identities=15% Similarity=0.211 Sum_probs=51.8
Q ss_pred eEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccC-----CCCCCCCChHHHHHHHHHHHHcCCCCCCceEE
Q 012433 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG-----YTKADDVPLSWRMKQHEKVLEDGVLDPETTVV 319 (464)
Q Consensus 245 ~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG-----~tK~~Di~~~~Rvr~ye~ll~~~y~p~~~~~l 319 (464)
.++..=+-||+|+||..|++. |.+.+ +-+.+-+... ..+..-++.+.|++-.++ +. .. +.++.
T Consensus 3 ~~~~~G~FDp~H~GH~~li~~----a~~~~---d~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~-~~--~~--d~v~~ 70 (129)
T 1coz_A 3 KVITYGTFDLLHWGHIKLLER----AKQLG---DYLVVAISTDEFNLQKQKKAYHSYEHRKLILET-IR--YV--DEVIP 70 (129)
T ss_dssp EEEEEECCCSCCHHHHHHHHH----HHTTS---SEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTT-BT--TC--CEEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHH----HHHhC---CCeEEEEECCHHHhcCCCCCCCCHHHHHHHHHh-cC--CC--CEEEe
Confidence 344455899999999999874 45553 3344433321 123456788999886653 21 22 33332
Q ss_pred EecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCC
Q 012433 320 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 356 (464)
Q Consensus 320 ~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHA 356 (464)
. + .+.+-+ . .+ +.++++++|+|-|..
T Consensus 71 ~-----~---~~~~~~-~-~l-~~~~~~~iv~G~D~~ 96 (129)
T 1coz_A 71 E-----K---NWEQKK-Q-DI-IDHNIDVFVMGDDWE 96 (129)
T ss_dssp E-----C---CSTTHH-H-HH-HHTTCSEEEEEGGGT
T ss_pred C-----C---CHHHHH-H-HH-HHhCCcEEEECCCCC
Confidence 2 1 122222 2 24 457999999998864
No 38
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=94.83 E-value=0.13 Score=51.51 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=62.0
Q ss_pred CeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEE----ecc--cCC---CC-CCCCChHHHHHHHHHHHHcCCCC
Q 012433 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL----HPL--GGY---TK-ADDVPLSWRMKQHEKVLEDGVLD 313 (464)
Q Consensus 244 ~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll----~Pl--vG~---tK-~~Di~~~~Rvr~ye~ll~~~y~p 313 (464)
..|++.=+-+-+|+||..|++++.+.|.+.| .+.+++ ||. +.. .+ .--.+.+-|++..+.+ |
T Consensus 21 ~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~--~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~l---G--- 92 (308)
T 3op1_A 21 DSVVVLGYFDGIHKGHQELFRVANKAARKDL--LPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKRE---G--- 92 (308)
T ss_dssp CEEEEESCCSSCCHHHHHHHHHHHHHSSTTC--CCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHH---T---
T ss_pred CeEEEEecCCcccHHHHHHHHHHHHHHHhcC--CceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHc---C---
Confidence 4688999999999999999987665555543 223333 221 222 11 1235567777766543 2
Q ss_pred CCceEEEecCCCcccC--ChhHHHHHHHHHHHcCCceeeecCCCC
Q 012433 314 PETTVVSIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDPA 356 (464)
Q Consensus 314 ~~~~~l~~lp~~MryA--GPREAllHAiiRkNyGcTHfIVGRDHA 356 (464)
-+.++ ++|..-.+| .|.| -..-++ +.+++.+++||-|+.
T Consensus 93 VD~v~--~~~F~~~~a~ls~e~-Fv~~ll-~~l~~~~ivvG~Dfr 133 (308)
T 3op1_A 93 VEELY--LLDFSSQFASLTAQE-FFATYI-KAMNAKIIVAGFDYT 133 (308)
T ss_dssp CCEEE--EECCCHHHHTCCHHH-HHHHHH-HHHTEEEEEEETTCC
T ss_pred CCEEE--EecCCHHHHcCCHHH-HHHHHH-HHcCCCEEEECcCCC
Confidence 23333 455554444 4544 344455 589999999999964
No 39
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=81.76 E-value=1.3 Score=39.31 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=37.8
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCCC--C--CCCCChHHHHHHHHHHH-Hc
Q 012433 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT--K--ADDVPLSWRMKQHEKVL-ED 309 (464)
Q Consensus 251 TRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~t--K--~~Di~~~~Rvr~ye~ll-~~ 309 (464)
|-||+|.||..+.+.| ++.+ .+-|++-|..... | ..-++.+.|++-.+.++ +.
T Consensus 8 tFDPiH~GHl~l~~~a----~~~~--~d~viv~v~~~~~~~k~~~~~~~~~~R~~ml~~a~~~~ 65 (148)
T 3do8_A 8 TFEPLHEGHKKLIDVA----IKLG--GRDITIGVTSDRMARARIRSVLPFAIRAENVKRYVMRK 65 (148)
T ss_dssp CCSSCCHHHHHHHHHH----HHHH--TTCEEEEEECHHHHHHHSCCCSCHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHH----HHhC--CCEEEEEECCCccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 8899999999998754 3432 1446665544332 3 45689999999999988 63
No 40
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=81.43 E-value=0.99 Score=44.31 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=32.6
Q ss_pred ccCCHHHHHHHHHhCCCCeEEEee-cCCCCchhhHHHHHHHH
Q 012433 227 FRLSPAQLRDEFSKRNADAVFAFQ-LRNPVHNGHALLMTDTR 267 (464)
Q Consensus 227 ~r~tP~e~R~~f~~~gw~~VvafQ-TRNPlHRaHe~l~k~~~ 267 (464)
.-.|++|+|+..+.....+-+||. |=.-+|.||..|++.|+
T Consensus 6 i~~ti~~lr~~~~~~~~g~~ig~VPTMGaLH~GHlsLv~~Ar 47 (264)
T 3n8h_A 6 IADNIKQFHSIRNSLIKQQKIGFVPTMGALHNGHISLIKKAK 47 (264)
T ss_dssp EECSHHHHHHHHHTSCTTSCEEEEEECSSCCHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHhCCCcEEEECCCcchhHHHHHHHHHHH
Confidence 345899999999864334568888 99999999999998653
No 41
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=71.55 E-value=0.68 Score=45.89 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=40.8
Q ss_pred ccCCHHHHHHHHHhCCCCeEEEee-cCCCCchhhHHHHHHHHHHHHHhc-CCCCcEEEecccCCCCCCCCCh
Q 012433 227 FRLSPAQLRDEFSKRNADAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMG-YQNPILLLHPLGGYTKADDVPL 296 (464)
Q Consensus 227 ~r~tP~e~R~~f~~~gw~~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g-~~~~~Lll~PlvG~tK~~Di~~ 296 (464)
.-.|.+|+|+..++ .+-+||. |=.=+|+||..|+++| .+.. ...-.+++||+- -...+|++.
T Consensus 7 i~~ti~~lr~~~~~---g~~ig~VPTMG~LH~GH~sLi~~A----~~~~d~vVvSifvnP~q-f~~~ed~~~ 70 (283)
T 3uk2_A 7 VISSIQELRDQLRG---QNRTAFVPTMGNLHEGHLSLMRLA----RQHGDPVVASIFVNRLQ-FGPNEDFDK 70 (283)
T ss_dssp EECCHHHHHHHTTT---CSSCEEEEECSSCCHHHHHHHHHH----HTTCSSEEEEECCCGGG-SCTTSCTTT
T ss_pred EEcCHHHHHHHHHc---CCeEEEECCCCcccHHHHHHHHHH----HHhCCEEEEEEcCCHHH-cCCcccccc
Confidence 34589999999886 3456777 9999999999999854 3331 001135667765 334556543
No 42
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=63.10 E-value=24 Score=35.48 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=55.9
Q ss_pred CeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEe----cccCCCC-CCCCChHHHHHHHHHHHHcCCCCCCceE
Q 012433 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH----PLGGYTK-ADDVPLSWRMKQHEKVLEDGVLDPETTV 318 (464)
Q Consensus 244 ~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~----PlvG~tK-~~Di~~~~Rvr~ye~ll~~~y~p~~~~~ 318 (464)
++|++.=+-+|+|.||..++++ |.+.+ +-|.+- |.+-..| +--++.+-|++..+++ . +. +.++
T Consensus 8 ~~v~~~G~FD~lH~GH~~lL~~----A~~l~---d~LiVgV~~d~~v~~~K~~pi~s~eER~~~l~~l-~--~V--D~Vv 75 (341)
T 3elb_A 8 VRVWCDGCYDMVHYGHSNQLRQ----ARAMG---DYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAI-K--WV--DEVV 75 (341)
T ss_dssp CEEEEEECCCSCCHHHHHHHHH----HHHTS---SEEEEEECCHHHHHHHSSCCSSCHHHHHHHHHHB-T--TC--CEEE
T ss_pred eEEEEEeeCCCCCHHHHHHHHH----HHHhC---CcCEEEeecCHHHhccCCCCCCCHHHHHHHHHHc-C--CC--CEEE
Confidence 4577777999999999999874 55664 333332 2111112 3457889999977763 2 22 2232
Q ss_pred EEec-CCCcccCChhHHHHHHHHHHHcCCceeeecCCCCC
Q 012433 319 VSIF-PSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 357 (464)
Q Consensus 319 l~~l-p~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAG 357 (464)
++ |. .-|.|-+ +.++|..++.|-|+..
T Consensus 76 --~f~~~----~~~~efi------~~~~~d~vV~G~D~~~ 103 (341)
T 3elb_A 76 --PAAPY----VTTLETL------DKYNCDFCVHGNDITL 103 (341)
T ss_dssp --ETCCS----SCCHHHH------HHTTCSEEEECSCCCB
T ss_pred --ecCCC----CCHHHHH------HHhCCCEEEECCCCCC
Confidence 22 21 2344442 6899999999999874
No 43
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=51.23 E-value=28 Score=34.17 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHh--CCCCeEEEeecCCCCchhhHHHHHHHH
Q 012433 228 RLSPAQLRDEFSK--RNADAVFAFQLRNPVHNGHALLMTDTR 267 (464)
Q Consensus 228 r~tP~e~R~~f~~--~gw~~VvafQTRNPlHRaHe~l~k~~~ 267 (464)
..|..|+|+..+. +.-++|+..=|-.-+|+||..|++.|+
T Consensus 4 ~~~~~el~~~~~~~r~~g~~V~~vgtfdgLH~GH~sLI~~A~ 45 (280)
T 2ejc_A 4 IETIEEMKKFSEEMREKKKTIGFVPTMGYLHEGHLSLVRRAR 45 (280)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEEEEEECSCCCHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHhcCCEEEEEcCCccccHHHHHHHHHHH
Confidence 3478888875442 112457666799999999999998543
No 44
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=49.23 E-value=36 Score=33.53 Aligned_cols=39 Identities=10% Similarity=0.287 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHhC-CCCeEEEee-cCCCCchhhHHHHHHH
Q 012433 228 RLSPAQLRDEFSKR-NADAVFAFQ-LRNPVHNGHALLMTDT 266 (464)
Q Consensus 228 r~tP~e~R~~f~~~-gw~~VvafQ-TRNPlHRaHe~l~k~~ 266 (464)
..|+.|+|+..+.. ...+-+||. |=.-+|+||..|++.+
T Consensus 5 ~~~~~~l~~~~~~~r~~g~~I~fVpTmG~lH~GH~~LI~~a 45 (283)
T 3ag6_A 5 ITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRES 45 (283)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHhcCCcEEEEECCccccHHHHHHHHHH
Confidence 35788998754321 112345663 4333999999999854
No 45
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=46.79 E-value=22 Score=35.60 Aligned_cols=63 Identities=21% Similarity=0.366 Sum_probs=39.7
Q ss_pred ccCCHHHHHHHHHh-CCCCeEEEee-cCCCCchhhHHHHHHHHHHHHHhcCCCCc----EEEecccCCCCCCCCChH
Q 012433 227 FRLSPAQLRDEFSK-RNADAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPI----LLLHPLGGYTKADDVPLS 297 (464)
Q Consensus 227 ~r~tP~e~R~~f~~-~gw~~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~~~~~----Lll~PlvG~tK~~Di~~~ 297 (464)
.-.|++|+|+..+. +...+-+||. |=.-+|.||..|+++|+ +. ++. +|+||+ ---.++|++.+
T Consensus 24 ii~t~~elr~~~~~~r~~g~~IgfVPTMG~LH~GHlsLi~~A~----~~---~d~vVVSIFVNP~-QF~~~EDl~~Y 92 (314)
T 3inn_A 24 IIHTIEELRQALAPARQQGKKIGFVPTMGYLHKGHLELVRRAR----VE---NDVTLVSIFVNPL-QFGANEDLGRY 92 (314)
T ss_dssp EECSHHHHHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHHHHH----HH---CSEEEEEECCCGG-GSCTTSSTTTC
T ss_pred EEcCHHHHHHHHHHHHHcCCeEEEEcCCCccCHHHHHHHHHHH----Hh---CCEEEEEECCChh-hcCCCcccccc
Confidence 44589999988753 1122356776 88899999999998653 33 243 556665 22244565443
No 46
>3v67_A Sensor protein CPXA; PAS fold, signal sensing, signaling protein, merohedral twin; 2.30A {Vibrio parahaemolyticus}
Probab=45.03 E-value=8.4 Score=34.02 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=41.4
Q ss_pred CCCeEEEeCCCCcEEEEEEeCccccCCHHHHHHH--hhCCCCCCChhHHHHHHhcCCEEEeeeEEEe
Q 012433 151 ESTRVALVDSDDNVVAILNDIEIYKHPKEERIAR--TWGTTAPGLPYVDQAITYAGNWLIGGDLEVL 215 (464)
Q Consensus 151 ~g~~vaL~d~eG~~lAiL~V~eiy~~Dk~~ea~~--vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l 215 (464)
+|.++-|+|.+|++++..+.++ -+-.|-+ ++-++++.||=.+ .-|+|.|.|++.+-
T Consensus 54 ~~~r~~l~d~eG~Il~~~~~~~-----~~~ralrnFi~~sd~~~~P~qk----~ygr~~i~GPf~i~ 111 (138)
T 3v67_A 54 PRPRVFFSDYNGNVLTTDKRSN-----FQLRAMQNFVTSIEDYNKPKQR----LYGRYMIAGPVPIV 111 (138)
T ss_dssp CSCEEEEECTTSCEECCCCSCH-----HHHHHHHHHHHHCSCTTSCEEE----EETTEEEEEEEEEE
T ss_pred CCccEEEEcCCCCEecCCcccc-----hhHHHHHHHHHhccCccCchhh----hhCcEEEeCCEEEE
Confidence 5778999999999999776443 1223444 4467778899866 47999999998764
No 47
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=44.26 E-value=7.6 Score=27.43 Aligned_cols=22 Identities=9% Similarity=-0.008 Sum_probs=16.1
Q ss_pred EEEecCCCceee-cCC-CCCccee
Q 012433 394 AAYDKTQGKMAF-FDP-SRAKDFL 415 (464)
Q Consensus 394 ~~Yc~~c~~~~~-~~p-h~~~~~~ 415 (464)
+.||..|+++-. .|| ||+-.++
T Consensus 11 yl~CE~C~~~~~~~Cp~HGP~~fV 34 (39)
T 2l9z_A 11 TIWCTLCDRAYPSDCPEHGPVTFV 34 (39)
T ss_dssp SEEEGGGTEEESSSBTTTBSCSCC
T ss_pred hhHHHHHhhhchhhchhcCCCccc
Confidence 579999999955 597 5665443
No 48
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=41.94 E-value=27 Score=34.58 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=28.8
Q ss_pred ccCCHHHHHHHHHh-CCCCeEEEee-cCCCCchhhHHHHHHH
Q 012433 227 FRLSPAQLRDEFSK-RNADAVFAFQ-LRNPVHNGHALLMTDT 266 (464)
Q Consensus 227 ~r~tP~e~R~~f~~-~gw~~VvafQ-TRNPlHRaHe~l~k~~ 266 (464)
.-.|++|+|+..+. +...+-+||. |=.-+|.||..|++.|
T Consensus 6 i~~t~~elr~~~~~~r~~g~~IgfVPTMG~LH~GHlsLv~~A 47 (287)
T 3q12_A 6 IIETLPLLRQQIRRWRQEGKRIALVPTMGNLHEGHMTLVDEA 47 (287)
T ss_dssp EECSHHHHHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHcCCeEEEEcCCCcccHHHHHHHHHH
Confidence 34589999998753 1122356776 8788999999999854
No 49
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=38.47 E-value=56 Score=32.85 Aligned_cols=90 Identities=12% Similarity=0.063 Sum_probs=54.0
Q ss_pred EEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCc-EEEecccC-----CCC---CCCCChHHHHHHHHHHHHcCCCCCCc
Q 012433 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPI-LLLHPLGG-----YTK---ADDVPLSWRMKQHEKVLEDGVLDPET 316 (464)
Q Consensus 246 VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~-Lll~PlvG-----~tK---~~Di~~~~Rvr~ye~ll~~~y~p~~~ 316 (464)
|+.-=|-+|+|.||..++++ |.+++ +. -||.-+.- ..| .--++.+-|+.+.+++ . |.+ .
T Consensus 201 v~~~GsFD~~h~GHl~~L~r----A~~l~---D~~~LiVgV~~d~~v~~~Kg~~~pi~~~~ER~~~v~~~-~--~vd--~ 268 (341)
T 3elb_A 201 IYVAGAFDLFHIGHVDFLEK----VHRLA---ERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLAC-R--YVS--E 268 (341)
T ss_dssp EEEEECCTTCCHHHHHHHHH----HHTTS---SSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHHHTB-T--TCC--E
T ss_pred EEEecccCCCCHHHHHHHHH----HHHhC---CCCEEEEEEccCHhhHhhcCCCCCCCCHHHHHHHHHHc-C--CCC--C
Confidence 33333999999999999874 56675 41 22222222 123 2368999999988863 3 433 3
Q ss_pred eEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCCCCCC
Q 012433 317 TVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGM 358 (464)
Q Consensus 317 ~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRDHAGv 358 (464)
+++. -|+. ... =+.+.+|++-++-|-|+...
T Consensus 269 V~v~-~~~~-----l~~-----~~~~~~~~~~iv~G~d~~~~ 299 (341)
T 3elb_A 269 VVIG-APYA-----VTA-----ELLSHFKVDLVCHGKTEIIP 299 (341)
T ss_dssp EEEE-ECSS-----CCH-----HHHHHTTCSEEEECSSCCCC
T ss_pred EEEC-CCCc-----chH-----HHHHhcCCcEEEECCCCccc
Confidence 4442 1211 111 12356799999999987653
No 50
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=37.68 E-value=8.2 Score=32.77 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=27.6
Q ss_pred cceeeEeceEEEecCCCcee------e-cCCC-CCcceeecCHHHH
Q 012433 385 RLNILPFKVAAYDKTQGKMA------F-FDPS-RAKDFLFISGTKM 422 (464)
Q Consensus 385 ~i~i~~f~~~~Yc~~c~~~~------~-~~ph-~~~~~~~iSGT~v 422 (464)
.|.|...+..++|..|+... . .||+ +......+||.+|
T Consensus 64 ~L~i~~~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~~i~~G~el 109 (119)
T 2kdx_A 64 ILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGNEM 109 (119)
T ss_dssp CEEEEEECCEEECSSSSCEECSCCSTTCCCSSSSSCCCEEEESSCC
T ss_pred EEEEEeccceEEcCCCCCEEeCCCCCCCcCccccCCCcEEecCCeE
Confidence 36777778889999999764 3 5897 5555556787654
No 51
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=35.53 E-value=32 Score=33.79 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=25.6
Q ss_pred cCCHHHHHHHHHhCCCCeEEEee-cCCCCchhhHHHHHHHH
Q 012433 228 RLSPAQLRDEFSKRNADAVFAFQ-LRNPVHNGHALLMTDTR 267 (464)
Q Consensus 228 r~tP~e~R~~f~~~gw~~VvafQ-TRNPlHRaHe~l~k~~~ 267 (464)
..+..|+|+..++.| ++|. |=.-+|+||..|+++|+
T Consensus 4 ~~~~~~l~~~~~~~g----i~~VpTmG~lH~GH~~Li~~A~ 40 (276)
T 1v8f_A 4 VSTVAELRAALPREG----VGFVPTMGYLHRGHLALVERAR 40 (276)
T ss_dssp ECSHHHHHHHCCSSC----EEEEEECSSCCHHHHHHHHHHH
T ss_pred EecHHHHHHHHhhcC----ceEEEeCCCccHHHHHHHHHHH
Confidence 357889988774444 5554 54449999999998654
No 52
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=34.63 E-value=35 Score=33.76 Aligned_cols=64 Identities=11% Similarity=0.219 Sum_probs=40.2
Q ss_pred ccCCHHHHHHHHHh-CCCCeEEEee-cCCCCchhhHHHHHHHHHHHHHhcC-CCCcEEEecccCCCCCCCCCh
Q 012433 227 FRLSPAQLRDEFSK-RNADAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGY-QNPILLLHPLGGYTKADDVPL 296 (464)
Q Consensus 227 ~r~tP~e~R~~f~~-~gw~~VvafQ-TRNPlHRaHe~l~k~~~~~ale~g~-~~~~Lll~PlvG~tK~~Di~~ 296 (464)
.-.|++|+|+..+. +.-.+-+||. |=.-+|.||..|++.|+ + +. ..-.+|+||+ ---..+|+..
T Consensus 6 i~~ti~elr~~~~~~~~~g~~Ig~VPTMGaLH~GHlsLv~~Ar----~-~d~VVVSIFVNP~-QF~~~EDl~~ 72 (285)
T 3mxt_A 6 VITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHAK----T-QDKVIVSIFVNPM-QFGPNEDFSS 72 (285)
T ss_dssp EECCHHHHHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHHHHT----T-SSEEEEEECCCGG-GCCTTSCTTT
T ss_pred EEcCHHHHHHHHHHHHHcCCeEEEEcCCCcccHHHHHHHHHHH----h-CCEEEEEeccCcc-ccCCchhhhc
Confidence 34589999998763 1223457887 88999999999998543 3 20 0123667776 2234456543
No 53
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=30.71 E-value=38 Score=32.53 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=59.8
Q ss_pred ccCCHHHHHHHHHhCCCCeEEEeecCCCCchhhHHHHHHHHHHHHHhcCCCCcEEEecccCC-----CC-CCCCChHHHH
Q 012433 227 FRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY-----TK-ADDVPLSWRM 300 (464)
Q Consensus 227 ~r~tP~e~R~~f~~~gw~~VvafQTRNPlHRaHe~l~k~~~~~ale~g~~~~~Lll~PlvG~-----tK-~~Di~~~~Rv 300 (464)
.+.|-.+.+..-...+-.+|+..=|-+|+|.||..++++ |.++. .++.|+| -+... .| .--++.+-|+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~V~~~GtFD~~H~GHl~iL~r----Ak~lf-~gD~LIV-gV~~D~~v~~~Kg~pi~s~eER~ 133 (236)
T 3hl4_A 60 VRVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQ----AKNLF-PNTYLIV-GVCSDELTHNFKGFTVMNENERY 133 (236)
T ss_dssp CCCCHHHHHHCCCTTSCEEEEEEECCTTCCHHHHHHHHH----HHTSS-SSEEEEE-EECCHHHHHHHTCCCSSCHHHHH
T ss_pred hhccHHHHhcCCCCCCCeEEEEeccCCCCCHHHHHHHHH----HHHhc-CCCeEEE-EEcccHHHhhcCCCCCCCHHHHH
Confidence 356666665544333334566666999999999999875 44551 1133444 22221 23 3368999999
Q ss_pred HHHHHHHHcCCCCCCceEEEecCCCcccCChhHHHHHHHHHHHcCCceeeecCC
Q 012433 301 KQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRD 354 (464)
Q Consensus 301 r~ye~ll~~~y~p~~~~~l~~lp~~MryAGPREAllHAiiRkNyGcTHfIVGRD 354 (464)
+..+++ . +. +.+++. -|+.. .. =.-+.+||+.++.|-|
T Consensus 134 e~v~~~-k--~V--D~Vvv~-~p~~l-----~~-----d~i~~~~~d~Vv~GDd 171 (236)
T 3hl4_A 134 DAVQHC-R--YV--DEVVRN-APWTL-----TP-----EFLAEHRIDFVAHDDI 171 (236)
T ss_dssp HHHHTB-T--TC--SEEESS-CCSSC-----CH-----HHHHHTTCCEEEEESS
T ss_pred HHHHHh-C--CC--CeEEEC-CcCcC-----cH-----HHHHHcCCCEEEECCc
Confidence 988753 2 32 234331 22221 11 1224789998888765
No 54
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=27.49 E-value=1.1e+02 Score=26.20 Aligned_cols=57 Identities=21% Similarity=0.150 Sum_probs=38.3
Q ss_pred ceeEEEecCHHHHHhcCCC-----------CeEEEeCCCCcEEEEEEeCccccC-CHHHHHHHhhCCCC
Q 012433 134 SVPIVLAIDDEQKRRIGES-----------TRVALVDSDDNVVAILNDIEIYKH-PKEERIARTWGTTA 190 (464)
Q Consensus 134 piPI~L~v~~e~~~~l~~g-----------~~vaL~d~eG~~lAiL~V~eiy~~-Dk~~ea~~vfGT~d 190 (464)
++|++.|.+.+.++.+..- -...|+|++|++++.....+.... +-++..+.+..|.-
T Consensus 100 ~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~~~~ 168 (175)
T 1xvq_A 100 NVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATSG 168 (175)
T ss_dssp CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHTC-
T ss_pred CceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHhhcC
Confidence 3488888776666665432 358899999999999875565543 55665666665543
No 55
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=26.93 E-value=16 Score=32.09 Aligned_cols=19 Identities=0% Similarity=-0.113 Sum_probs=15.7
Q ss_pred cceeeEeceEEEecCCCce
Q 012433 385 RLNILPFKVAAYDKTQGKM 403 (464)
Q Consensus 385 ~i~i~~f~~~~Yc~~c~~~ 403 (464)
.|.|...+..++|..|+..
T Consensus 61 ~L~i~~~p~~~~C~~CG~~ 79 (139)
T 3a43_A 61 EIEFVEEEAVFKCRNCNYE 79 (139)
T ss_dssp EEEEEEECCEEEETTTCCE
T ss_pred EEEEEecCCcEECCCCCCE
Confidence 3777778889999999866
No 56
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=23.21 E-value=1.5e+02 Score=24.05 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=33.3
Q ss_pred ceeEEEecCHHHHHhcC--CCCeEEEeCCCCcEEEEEEeCcccc-CCHHHHHHHhhCCCCCCChh
Q 012433 134 SVPIVLAIDDEQKRRIG--ESTRVALVDSDDNVVAILNDIEIYK-HPKEERIARTWGTTAPGLPY 195 (464)
Q Consensus 134 piPI~L~v~~e~~~~l~--~g~~vaL~d~eG~~lAiL~V~eiy~-~Dk~~ea~~vfGT~d~~HPg 195 (464)
++|+..+.+.+.++.+. .--.+.|+|++|+++....-..-+. ..-++..++.-+..+..||+
T Consensus 86 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~~~~~~ 150 (152)
T 3gl3_A 86 EFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNEGHHHH 150 (152)
T ss_dssp CSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC--------
T ss_pred CCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccccccccc
Confidence 34888888777766553 3356788999999998766322111 12333455555655555554
Done!