Query 012434
Match_columns 464
No_of_seqs 141 out of 1728
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 09:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.3E-53 4.3E-58 414.0 37.9 346 34-446 62-411 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3.3E-51 1.1E-55 397.4 35.1 361 16-446 9-387 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.6E-51 8.7E-56 397.1 34.0 349 29-447 39-388 (410)
4 1xti_A Probable ATP-dependent 100.0 8.2E-51 2.8E-55 391.3 35.1 348 34-448 14-363 (391)
5 1s2m_A Putative ATP-dependent 100.0 1.6E-50 5.5E-55 390.3 33.3 348 28-446 22-369 (400)
6 3eiq_A Eukaryotic initiation f 100.0 2.1E-50 7.3E-55 391.4 32.2 351 29-447 42-392 (414)
7 3fht_A ATP-dependent RNA helic 100.0 2E-50 6.8E-55 391.4 30.9 352 27-447 25-384 (412)
8 3pey_A ATP-dependent RNA helic 100.0 4.8E-50 1.6E-54 386.6 31.8 349 29-448 7-362 (395)
9 1hv8_A Putative ATP-dependent 100.0 3.5E-49 1.2E-53 376.6 31.1 344 29-448 8-351 (367)
10 1fuu_A Yeast initiation factor 100.0 1.1E-50 3.8E-55 390.8 18.2 348 29-447 23-371 (394)
11 3sqw_A ATP-dependent RNA helic 100.0 4.9E-48 1.7E-52 388.8 33.4 359 34-445 27-401 (579)
12 3fmp_B ATP-dependent RNA helic 100.0 3.4E-50 1.2E-54 396.3 17.2 352 28-448 93-452 (479)
13 3i5x_A ATP-dependent RNA helic 100.0 1.6E-47 5.6E-52 385.0 33.3 359 34-445 78-452 (563)
14 2z0m_A 337AA long hypothetical 100.0 2E-47 6.8E-52 360.1 30.9 321 35-440 1-321 (337)
15 3fho_A ATP-dependent RNA helic 100.0 1.3E-47 4.4E-52 378.8 19.0 344 34-447 125-475 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 8.2E-46 2.8E-50 369.0 27.6 335 30-445 24-377 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 7.2E-46 2.5E-50 366.0 26.7 332 35-445 9-346 (523)
18 3oiy_A Reverse gyrase helicase 100.0 1.1E-43 3.7E-48 343.7 27.4 332 37-443 8-366 (414)
19 2zj8_A DNA helicase, putative 100.0 1.6E-42 5.4E-47 357.2 26.9 341 29-445 3-390 (720)
20 2va8_A SSO2462, SKI2-type heli 100.0 7.4E-42 2.5E-46 352.5 29.2 340 27-443 8-409 (715)
21 2p6r_A Afuhel308 helicase; pro 100.0 1.6E-42 5.5E-47 356.2 21.4 338 35-446 10-392 (702)
22 1wp9_A ATP-dependent RNA helic 100.0 3.5E-41 1.2E-45 334.0 29.5 334 50-456 9-489 (494)
23 4a2p_A RIG-I, retinoic acid in 100.0 7.1E-42 2.4E-46 344.3 24.2 339 47-447 4-513 (556)
24 2ykg_A Probable ATP-dependent 100.0 1.4E-41 4.8E-46 350.5 23.4 345 40-444 3-518 (696)
25 3tbk_A RIG-I helicase domain; 100.0 5.9E-41 2E-45 337.6 25.7 337 50-447 4-512 (555)
26 3l9o_A ATP-dependent RNA helic 100.0 3.9E-41 1.3E-45 355.8 22.9 335 35-448 169-603 (1108)
27 4a2q_A RIG-I, retinoic acid in 100.0 1E-40 3.6E-45 346.9 24.5 342 44-446 242-753 (797)
28 2xgj_A ATP-dependent RNA helic 100.0 1.8E-39 6.1E-44 340.2 27.3 323 43-448 80-505 (1010)
29 1gm5_A RECG; helicase, replica 100.0 6.6E-40 2.3E-44 333.0 23.1 327 36-440 355-695 (780)
30 4ddu_A Reverse gyrase; topoiso 100.0 3.4E-39 1.2E-43 340.8 27.0 301 39-414 67-388 (1104)
31 4a2w_A RIG-I, retinoic acid in 100.0 1E-39 3.5E-44 342.6 22.8 342 44-446 242-753 (936)
32 2oca_A DAR protein, ATP-depend 100.0 1.8E-39 6.3E-44 322.5 21.2 314 49-443 112-456 (510)
33 2eyq_A TRCF, transcription-rep 100.0 2E-38 6.8E-43 337.2 30.3 330 35-443 588-923 (1151)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 2.2E-39 7.5E-44 342.7 21.1 327 41-445 48-457 (1054)
35 4f92_B U5 small nuclear ribonu 100.0 8.9E-39 3E-43 349.0 26.4 362 35-460 911-1325(1724)
36 1tf5_A Preprotein translocase 100.0 2.7E-38 9.4E-43 314.7 25.5 358 45-444 79-547 (844)
37 4f92_B U5 small nuclear ribonu 100.0 1.4E-38 4.8E-43 347.4 24.6 359 35-460 66-490 (1724)
38 4gl2_A Interferon-induced heli 100.0 6.7E-39 2.3E-43 330.7 20.4 340 50-443 7-519 (699)
39 4a4z_A Antiviral helicase SKI2 100.0 1.7E-38 5.7E-43 333.0 23.2 317 45-440 35-490 (997)
40 2fwr_A DNA repair protein RAD2 100.0 5E-38 1.7E-42 309.1 22.8 300 50-449 93-461 (472)
41 2fsf_A Preprotein translocase 100.0 3E-36 1E-40 299.2 24.2 358 46-445 71-586 (853)
42 1nkt_A Preprotein translocase 100.0 1.4E-35 4.7E-40 294.7 26.3 358 45-444 107-619 (922)
43 2jlq_A Serine protease subunit 100.0 1.2E-35 4E-40 288.5 19.7 288 47-441 1-310 (451)
44 2xau_A PRE-mRNA-splicing facto 100.0 5.9E-35 2E-39 298.9 22.2 337 27-444 72-445 (773)
45 1yks_A Genome polyprotein [con 100.0 1.8E-36 6.1E-41 292.8 10.2 267 65-440 4-297 (440)
46 3h1t_A Type I site-specific re 100.0 2.9E-35 1E-39 296.9 17.6 319 50-442 178-558 (590)
47 2whx_A Serine protease/ntpase/ 100.0 6.1E-35 2.1E-39 291.6 18.9 299 35-440 157-476 (618)
48 3dmq_A RNA polymerase-associat 100.0 9.7E-35 3.3E-39 305.2 20.6 374 49-452 152-625 (968)
49 3o8b_A HCV NS3 protease/helica 100.0 2.3E-34 8E-39 284.4 20.1 281 50-446 217-518 (666)
50 1z63_A Helicase of the SNF2/RA 100.0 5.9E-34 2E-38 282.1 22.8 325 49-452 36-463 (500)
51 2wv9_A Flavivirin protease NS2 100.0 1.6E-34 5.6E-39 290.2 17.4 297 42-440 202-531 (673)
52 2v6i_A RNA helicase; membrane, 100.0 9.2E-34 3.2E-38 273.4 20.6 270 69-440 2-288 (431)
53 2z83_A Helicase/nucleoside tri 100.0 1.6E-34 5.4E-39 281.0 15.0 269 67-442 19-313 (459)
54 1z3i_X Similar to RAD54-like; 100.0 8.7E-31 3E-35 264.9 29.3 371 50-449 55-535 (644)
55 3mwy_W Chromo domain-containin 100.0 2.3E-31 7.9E-36 275.8 24.8 378 49-449 235-691 (800)
56 3rc3_A ATP-dependent RNA helic 100.0 1.7E-31 5.9E-36 267.3 20.4 270 68-439 154-442 (677)
57 3fe2_A Probable ATP-dependent 100.0 8.5E-31 2.9E-35 233.7 20.6 213 17-299 24-240 (242)
58 3ber_A Probable ATP-dependent 100.0 1.2E-30 3.9E-35 233.2 21.1 219 13-296 29-247 (249)
59 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 4.7E-31 1.6E-35 275.0 19.8 332 36-440 250-707 (1038)
60 3ly5_A ATP-dependent RNA helic 100.0 2.8E-30 9.6E-35 232.6 19.8 219 6-291 35-257 (262)
61 2pl3_A Probable ATP-dependent 100.0 7E-30 2.4E-34 227.1 21.9 199 35-297 32-233 (236)
62 2oxc_A Probable ATP-dependent 100.0 5.6E-30 1.9E-34 226.6 20.2 201 28-295 25-227 (230)
63 1vec_A ATP-dependent RNA helic 100.0 1.2E-29 4.2E-34 220.8 20.5 195 35-294 10-205 (206)
64 1t6n_A Probable ATP-dependent 100.0 4.4E-29 1.5E-33 219.5 23.0 203 27-294 14-218 (220)
65 3fmo_B ATP-dependent RNA helic 100.0 1E-29 3.4E-34 233.1 19.4 204 28-297 93-298 (300)
66 1qde_A EIF4A, translation init 100.0 1.7E-29 5.7E-34 222.9 19.4 198 35-298 21-218 (224)
67 3bor_A Human initiation factor 100.0 1.1E-29 3.7E-34 225.7 18.3 206 20-296 28-234 (237)
68 3jux_A Protein translocase sub 100.0 1.7E-28 5.8E-33 238.9 27.7 379 46-445 72-590 (822)
69 3iuy_A Probable ATP-dependent 100.0 2.1E-29 7.1E-34 222.8 19.3 196 34-294 26-226 (228)
70 1wrb_A DJVLGB; RNA helicase, D 100.0 1.2E-29 4.2E-34 228.0 18.0 210 29-299 25-242 (253)
71 1q0u_A Bstdead; DEAD protein, 100.0 1.3E-29 4.4E-34 222.6 17.6 199 35-298 11-213 (219)
72 3dkp_A Probable ATP-dependent 100.0 1.9E-29 6.4E-34 225.7 16.8 220 16-298 19-242 (245)
73 2gxq_A Heat resistant RNA depe 100.0 9.6E-29 3.3E-33 215.3 20.1 196 34-295 7-204 (207)
74 1c4o_A DNA nucleotide excision 99.9 6E-25 2.1E-29 221.9 27.9 123 318-444 423-552 (664)
75 2ipc_A Preprotein translocase 99.9 1.3E-24 4.4E-29 215.7 25.8 131 46-210 76-215 (997)
76 2d7d_A Uvrabc system protein B 99.9 1.3E-23 4.3E-28 212.1 29.0 122 319-444 430-558 (661)
77 2vl7_A XPD; helicase, unknown 99.9 4.3E-25 1.5E-29 218.6 16.6 375 46-452 4-531 (540)
78 2hjv_A ATP-dependent RNA helic 99.9 1.1E-24 3.9E-29 181.1 14.5 139 305-446 8-146 (163)
79 1t5i_A C_terminal domain of A 99.9 1.1E-24 3.6E-29 182.7 13.0 137 305-444 4-140 (172)
80 1fuk_A Eukaryotic initiation f 99.9 3.5E-24 1.2E-28 178.6 14.1 137 307-446 4-141 (165)
81 3crv_A XPD/RAD3 related DNA he 99.9 1.4E-23 4.7E-28 208.8 19.0 384 47-451 1-540 (551)
82 2rb4_A ATP-dependent RNA helic 99.9 4.5E-24 1.5E-28 179.8 12.8 139 304-445 5-150 (175)
83 3eaq_A Heat resistant RNA depe 99.9 9.4E-24 3.2E-28 183.2 14.9 136 307-445 6-141 (212)
84 2p6n_A ATP-dependent RNA helic 99.9 5.5E-24 1.9E-28 181.1 12.6 153 286-443 10-162 (191)
85 2jgn_A DBX, DDX3, ATP-dependen 99.9 6E-24 2E-28 180.1 12.6 141 303-446 16-157 (185)
86 3i32_A Heat resistant RNA depe 99.9 8.8E-23 3E-27 185.2 14.6 136 307-445 3-138 (300)
87 4a15_A XPD helicase, ATP-depen 99.9 1.6E-22 5.4E-27 202.4 17.4 90 50-142 3-92 (620)
88 2yjt_D ATP-dependent RNA helic 99.8 3.2E-24 1.1E-28 179.7 0.0 136 308-446 5-141 (170)
89 3b6e_A Interferon-induced heli 99.9 1.3E-21 4.5E-26 171.3 13.5 146 46-217 29-182 (216)
90 1rif_A DAR protein, DNA helica 99.8 5.1E-20 1.7E-24 167.8 10.7 128 50-212 113-240 (282)
91 3llm_A ATP-dependent RNA helic 99.8 2.1E-18 7.3E-23 152.4 13.7 142 49-224 60-205 (235)
92 1z5z_A Helicase of the SNF2/RA 99.8 2.8E-18 9.5E-23 153.9 11.4 134 315-451 93-233 (271)
93 2fz4_A DNA repair protein RAD2 99.8 4.4E-18 1.5E-22 150.1 11.8 117 50-215 93-210 (237)
94 1w36_D RECD, exodeoxyribonucle 98.4 6.4E-07 2.2E-11 89.6 10.2 86 38-129 136-224 (608)
95 4b3f_X DNA-binding protein smu 98.4 8.9E-07 3.1E-11 89.6 10.1 69 49-124 188-256 (646)
96 2gk6_A Regulator of nonsense t 98.2 1E-05 3.6E-10 81.3 13.6 70 48-124 178-247 (624)
97 3upu_A ATP-dependent DNA helic 98.2 2.8E-06 9.5E-11 82.3 7.4 73 46-121 21-94 (459)
98 2xzl_A ATP-dependent helicase 98.1 3.3E-05 1.1E-09 79.4 15.0 70 48-124 358-427 (802)
99 2wjy_A Regulator of nonsense t 98.1 3.2E-05 1.1E-09 79.4 13.7 69 49-124 355-423 (800)
100 3e1s_A Exodeoxyribonuclease V, 97.9 3E-05 1E-09 76.8 9.4 63 50-120 189-251 (574)
101 3hgt_A HDA1 complex subunit 3; 97.8 0.00018 6.2E-09 64.5 12.3 126 315-448 106-243 (328)
102 3lfu_A DNA helicase II; SF1 he 97.4 0.00024 8.1E-09 72.2 8.1 83 49-137 8-92 (647)
103 1uaa_A REP helicase, protein ( 97.2 0.00061 2.1E-08 69.3 8.1 83 50-138 2-87 (673)
104 3vkw_A Replicase large subunit 97.2 0.00035 1.2E-08 65.9 5.4 45 70-123 162-206 (446)
105 1pjr_A PCRA; DNA repair, DNA r 97.1 0.0011 3.9E-08 67.8 8.7 83 49-137 10-94 (724)
106 2orw_A Thymidine kinase; TMTK, 96.9 0.00048 1.6E-08 57.3 3.0 39 69-111 3-41 (184)
107 2o0j_A Terminase, DNA packagin 96.9 0.0024 8.3E-08 59.4 7.9 72 50-127 163-234 (385)
108 1xx6_A Thymidine kinase; NESG, 96.8 0.0039 1.3E-07 51.9 8.1 39 69-111 8-46 (191)
109 2j9r_A Thymidine kinase; TK1, 96.6 0.0049 1.7E-07 51.9 7.4 40 69-112 28-67 (214)
110 3e2i_A Thymidine kinase; Zn-bi 96.6 0.0026 9E-08 53.4 5.4 40 69-112 28-67 (219)
111 2b8t_A Thymidine kinase; deoxy 96.4 0.0018 6.2E-08 55.4 3.3 39 69-111 12-50 (223)
112 3ec2_A DNA replication protein 96.4 0.01 3.6E-07 48.9 8.0 19 69-87 38-56 (180)
113 3cpe_A Terminase, DNA packagin 96.4 0.0027 9.1E-08 63.4 4.9 73 50-128 163-235 (592)
114 1w4r_A Thymidine kinase; type 96.3 0.0053 1.8E-07 50.8 5.4 38 69-110 20-57 (195)
115 1a5t_A Delta prime, HOLB; zinc 96.0 0.016 5.3E-07 53.3 7.5 37 51-87 3-42 (334)
116 2orv_A Thymidine kinase; TP4A 96.0 0.0072 2.5E-07 51.4 4.8 40 69-112 19-58 (234)
117 3u4q_A ATP-dependent helicase/ 95.9 0.011 3.9E-07 64.2 7.3 70 49-124 9-80 (1232)
118 3te6_A Regulatory protein SIR3 95.8 0.04 1.4E-06 49.8 9.2 27 68-95 44-70 (318)
119 1l8q_A Chromosomal replication 95.7 0.072 2.5E-06 48.5 10.9 37 69-109 37-73 (324)
120 2z4s_A Chromosomal replication 94.9 0.2 7E-06 47.7 11.4 39 69-109 130-168 (440)
121 2v1u_A Cell division control p 94.6 0.14 4.6E-06 47.8 9.5 20 68-87 43-62 (387)
122 2chg_A Replication factor C sm 94.3 0.37 1.3E-05 40.6 10.9 17 70-86 39-55 (226)
123 1gm5_A RECG; helicase, replica 94.2 0.13 4.3E-06 52.8 8.5 84 331-414 416-501 (780)
124 3u61_B DNA polymerase accessor 94.1 0.28 9.6E-06 44.5 10.1 14 197-210 105-118 (324)
125 2zpa_A Uncharacterized protein 94.0 0.09 3.1E-06 52.3 6.9 59 50-117 175-233 (671)
126 2hjv_A ATP-dependent RNA helic 93.8 1.1 3.8E-05 35.7 12.2 77 101-206 35-112 (163)
127 2qby_B CDC6 homolog 3, cell di 93.4 0.19 6.6E-06 46.8 8.0 19 69-87 45-63 (384)
128 2gno_A DNA polymerase III, gam 93.4 0.19 6.4E-06 45.2 7.4 18 70-87 19-36 (305)
129 3oiy_A Reverse gyrase helicase 93.1 0.31 1E-05 46.0 8.8 82 331-412 63-148 (414)
130 3hjh_A Transcription-repair-co 92.9 0.63 2.2E-05 44.7 10.6 75 321-411 372-446 (483)
131 1fuk_A Eukaryotic initiation f 92.7 1.5 5.3E-05 35.0 11.4 76 101-205 30-106 (165)
132 1iqp_A RFCS; clamp loader, ext 92.7 0.15 5E-06 46.4 5.7 18 70-87 47-64 (327)
133 2rb4_A ATP-dependent RNA helic 92.6 1.2 4.2E-05 35.9 10.9 76 100-204 33-109 (175)
134 2zr9_A Protein RECA, recombina 92.5 0.086 2.9E-06 48.5 3.8 41 66-110 58-98 (349)
135 2jgn_A DBX, DDX3, ATP-dependen 92.3 0.73 2.5E-05 37.8 9.0 77 100-205 45-122 (185)
136 1t5i_A C_terminal domain of A 92.3 1.7 5.7E-05 35.1 11.1 77 101-206 31-108 (172)
137 3io5_A Recombination and repai 92.2 0.079 2.7E-06 47.4 3.1 43 68-113 28-70 (333)
138 3eaq_A Heat resistant RNA depe 92.1 2.2 7.5E-05 35.8 12.0 74 101-203 31-105 (212)
139 2p6n_A ATP-dependent RNA helic 91.8 1.7 5.8E-05 35.8 10.8 76 101-205 54-130 (191)
140 3n70_A Transport activator; si 91.8 0.088 3E-06 41.5 2.7 19 68-86 23-41 (145)
141 3kl4_A SRP54, signal recogniti 91.8 0.88 3E-05 42.9 9.9 35 70-108 98-132 (433)
142 2w58_A DNAI, primosome compone 91.4 0.15 5E-06 42.7 3.9 18 70-87 55-72 (202)
143 3hr8_A Protein RECA; alpha and 91.4 0.098 3.4E-06 48.0 2.9 40 68-111 60-99 (356)
144 1xp8_A RECA protein, recombina 91.2 0.13 4.3E-06 47.6 3.4 48 59-110 62-111 (366)
145 1u94_A RECA protein, recombina 91.0 0.13 4.4E-06 47.4 3.2 40 66-109 60-99 (356)
146 2eyq_A TRCF, transcription-rep 90.6 0.88 3E-05 49.0 9.7 82 331-412 651-734 (1151)
147 4ddu_A Reverse gyrase; topoiso 90.4 0.44 1.5E-05 51.0 7.1 82 331-412 120-205 (1104)
148 3cmu_A Protein RECA, recombina 90.0 0.2 6.8E-06 56.2 4.2 43 66-112 1424-1466(2050)
149 3co5_A Putative two-component 89.7 0.1 3.4E-06 41.0 1.2 18 68-85 26-43 (143)
150 2p65_A Hypothetical protein PF 89.6 0.48 1.6E-05 38.6 5.4 19 69-87 43-61 (187)
151 1t6n_A Probable ATP-dependent 89.3 2 6.9E-05 36.1 9.3 106 333-441 83-198 (220)
152 3u4q_B ATP-dependent helicase/ 89.1 0.45 1.5E-05 51.5 6.1 39 73-112 5-43 (1166)
153 2qgz_A Helicase loader, putati 88.9 0.37 1.3E-05 43.4 4.5 36 69-108 152-188 (308)
154 4b4t_J 26S protease regulatory 88.2 0.24 8.3E-06 46.1 2.8 54 26-86 144-199 (405)
155 3i5x_A ATP-dependent RNA helic 88.1 6.6 0.00023 38.5 13.4 81 100-206 338-419 (563)
156 2w0m_A SSO2452; RECA, SSPF, un 88.1 0.64 2.2E-05 39.5 5.4 41 65-109 19-59 (235)
157 3syl_A Protein CBBX; photosynt 87.7 0.62 2.1E-05 41.8 5.2 19 69-87 67-85 (309)
158 2zts_A Putative uncharacterize 87.6 0.59 2E-05 40.3 4.9 52 68-123 29-80 (251)
159 3i32_A Heat resistant RNA depe 87.6 4.3 0.00015 36.1 10.6 76 101-205 28-104 (300)
160 3iuy_A Probable ATP-dependent 87.5 1.4 4.9E-05 37.3 7.2 78 331-412 93-176 (228)
161 4b4t_M 26S protease regulatory 87.4 0.34 1.2E-05 45.7 3.4 54 26-86 177-232 (434)
162 3dm5_A SRP54, signal recogniti 87.3 2.8 9.6E-05 39.6 9.4 60 70-136 101-162 (443)
163 2d7d_A Uvrabc system protein B 87.3 3.8 0.00013 41.2 11.1 81 100-209 444-525 (661)
164 3sqw_A ATP-dependent RNA helic 87.2 5.5 0.00019 39.3 12.2 82 100-207 287-369 (579)
165 2eyu_A Twitching motility prot 87.1 0.35 1.2E-05 42.3 3.1 21 66-86 22-42 (261)
166 2dr3_A UPF0273 protein PH0284; 86.6 0.64 2.2E-05 40.0 4.5 50 68-122 22-71 (247)
167 4b4t_L 26S protease subunit RP 86.5 0.32 1.1E-05 46.0 2.6 55 26-87 177-233 (437)
168 2bjv_A PSP operon transcriptio 86.5 0.66 2.3E-05 40.6 4.6 19 68-86 28-46 (265)
169 2i4i_A ATP-dependent RNA helic 86.4 4.4 0.00015 37.8 10.6 75 100-203 275-350 (417)
170 2r44_A Uncharacterized protein 86.2 0.19 6.7E-06 45.8 0.9 32 55-86 32-63 (331)
171 1jbk_A CLPB protein; beta barr 85.9 0.73 2.5E-05 37.6 4.4 19 69-87 43-61 (195)
172 3ber_A Probable ATP-dependent 85.9 3.9 0.00013 35.2 9.2 78 331-412 110-195 (249)
173 2cvh_A DNA repair and recombin 85.8 0.75 2.6E-05 38.7 4.5 44 59-109 9-53 (220)
174 1c4o_A DNA nucleotide excision 85.6 6.2 0.00021 39.7 11.6 81 100-209 438-519 (664)
175 2oap_1 GSPE-2, type II secreti 85.5 1.5 5.2E-05 42.5 6.8 18 68-85 259-276 (511)
176 3bh0_A DNAB-like replicative h 85.5 0.92 3.1E-05 40.9 5.1 61 58-123 57-117 (315)
177 4b4t_I 26S protease regulatory 85.1 0.45 1.5E-05 44.6 2.8 55 26-87 178-234 (437)
178 3hws_A ATP-dependent CLP prote 84.9 0.42 1.4E-05 44.2 2.6 20 68-87 50-69 (363)
179 1tue_A Replication protein E1; 84.8 0.53 1.8E-05 39.2 2.8 30 58-87 47-76 (212)
180 3bos_A Putative DNA replicatio 84.7 1 3.5E-05 38.4 4.8 20 68-87 51-70 (242)
181 2kjq_A DNAA-related protein; s 84.6 0.81 2.8E-05 36.0 3.7 20 68-87 35-54 (149)
182 1w36_B RECB, exodeoxyribonucle 84.3 1.5 5.2E-05 47.4 6.9 56 70-125 17-80 (1180)
183 1xti_A Probable ATP-dependent 83.6 5 0.00017 37.0 9.5 79 100-207 249-328 (391)
184 1e9r_A Conjugal transfer prote 83.4 1 3.4E-05 42.8 4.6 43 69-115 53-95 (437)
185 1u0j_A DNA replication protein 83.2 2.1 7E-05 37.3 6.0 49 36-87 72-122 (267)
186 2oxc_A Probable ATP-dependent 83.0 2.5 8.7E-05 35.8 6.6 77 331-412 91-175 (230)
187 3fht_A ATP-dependent RNA helic 82.9 5.2 0.00018 37.2 9.4 74 101-203 266-340 (412)
188 3nbx_X ATPase RAVA; AAA+ ATPas 82.8 0.24 8.2E-06 47.8 -0.0 31 55-85 27-57 (500)
189 3pey_A ATP-dependent RNA helic 82.8 5.8 0.0002 36.5 9.6 78 101-207 243-321 (395)
190 2chq_A Replication factor C sm 82.8 1.2 4E-05 40.1 4.6 18 70-87 39-56 (319)
191 1p9r_A General secretion pathw 82.6 0.96 3.3E-05 42.5 4.0 30 54-85 154-183 (418)
192 1cr0_A DNA primase/helicase; R 82.6 2.9 0.0001 37.1 7.1 49 58-109 24-72 (296)
193 1ofh_A ATP-dependent HSL prote 82.6 0.37 1.3E-05 43.3 1.1 19 69-87 50-68 (310)
194 2qor_A Guanylate kinase; phosp 82.5 0.95 3.2E-05 37.8 3.6 22 65-86 8-29 (204)
195 3bgw_A DNAB-like replicative h 82.4 1.4 4.8E-05 41.8 5.1 48 58-109 186-233 (444)
196 1vec_A ATP-dependent RNA helic 82.4 5.1 0.00017 33.0 8.2 77 332-412 71-155 (206)
197 1ojl_A Transcriptional regulat 82.3 0.63 2.2E-05 41.8 2.6 19 68-86 24-42 (304)
198 2v1x_A ATP-dependent DNA helic 82.3 2.9 9.8E-05 41.4 7.4 59 332-393 84-144 (591)
199 2gxq_A Heat resistant RNA depe 82.3 5 0.00017 33.1 8.1 77 331-412 71-153 (207)
200 1sxj_D Activator 1 41 kDa subu 82.2 0.58 2E-05 42.9 2.3 18 70-87 59-76 (353)
201 4ag6_A VIRB4 ATPase, type IV s 82.1 1.5 5.1E-05 40.9 5.1 41 68-112 34-74 (392)
202 1s2m_A Putative ATP-dependent 82.0 6.8 0.00023 36.2 9.8 77 100-205 257-334 (400)
203 1oyw_A RECQ helicase, ATP-depe 82.0 2.7 9.2E-05 40.9 7.1 77 332-411 65-147 (523)
204 2l8b_A Protein TRAI, DNA helic 81.9 3.2 0.00011 33.6 6.1 59 53-116 37-95 (189)
205 1wp9_A ATP-dependent RNA helic 81.9 10 0.00036 35.8 11.4 99 78-207 340-447 (494)
206 3vaa_A Shikimate kinase, SK; s 81.8 0.82 2.8E-05 38.0 2.9 20 68-87 24-43 (199)
207 1g5t_A COB(I)alamin adenosyltr 81.8 1.9 6.3E-05 35.6 4.9 35 69-107 28-62 (196)
208 3eie_A Vacuolar protein sortin 81.8 0.82 2.8E-05 41.4 3.1 19 69-87 51-69 (322)
209 2c9o_A RUVB-like 1; hexameric 81.7 1.3 4.6E-05 42.2 4.7 20 68-87 62-81 (456)
210 2qz4_A Paraplegin; AAA+, SPG7, 81.5 0.92 3.1E-05 39.4 3.3 20 68-87 38-57 (262)
211 1lvg_A Guanylate kinase, GMP k 81.3 0.91 3.1E-05 37.7 3.0 19 68-86 3-21 (198)
212 3cf0_A Transitional endoplasmi 81.3 0.9 3.1E-05 40.7 3.2 20 68-87 48-67 (301)
213 2db3_A ATP-dependent RNA helic 81.2 13 0.00044 35.0 11.4 73 103-204 302-375 (434)
214 1kgd_A CASK, peripheral plasma 81.2 0.97 3.3E-05 36.8 3.1 19 68-86 4-22 (180)
215 3fe2_A Probable ATP-dependent 81.1 4.1 0.00014 34.8 7.3 77 332-412 102-185 (242)
216 3h4m_A Proteasome-activating n 81.1 0.93 3.2E-05 40.1 3.2 19 68-86 50-68 (285)
217 4b4t_H 26S protease regulatory 81.0 1.1 3.6E-05 42.5 3.6 54 26-86 205-260 (467)
218 3iij_A Coilin-interacting nucl 81.0 1.3 4.3E-05 36.0 3.8 20 68-87 10-29 (180)
219 4b4t_K 26S protease regulatory 81.0 1.2 4E-05 42.0 3.9 55 26-87 168-224 (428)
220 1kag_A SKI, shikimate kinase I 80.9 1.1 3.7E-05 36.1 3.3 18 69-86 4-21 (173)
221 2r6a_A DNAB helicase, replicat 80.9 2.3 7.7E-05 40.6 6.0 50 58-110 192-241 (454)
222 4a1f_A DNAB helicase, replicat 80.8 1.9 6.4E-05 39.2 5.1 58 59-121 36-93 (338)
223 2r8r_A Sensor protein; KDPD, P 80.7 1.7 6E-05 36.7 4.5 26 70-95 7-32 (228)
224 2q6t_A DNAB replication FORK h 80.6 2.2 7.5E-05 40.6 5.8 49 58-109 189-237 (444)
225 2pl3_A Probable ATP-dependent 80.6 7.7 0.00026 32.8 8.9 77 331-412 96-180 (236)
226 3bor_A Human initiation factor 80.4 3.4 0.00012 35.2 6.5 79 331-412 97-182 (237)
227 2j0s_A ATP-dependent RNA helic 80.4 7.1 0.00024 36.3 9.3 75 102-205 277-352 (410)
228 3a8t_A Adenylate isopentenyltr 80.1 0.87 3E-05 41.2 2.6 18 70-87 41-58 (339)
229 3uk6_A RUVB-like 2; hexameric 80.1 1.4 4.7E-05 40.6 4.1 19 69-87 70-88 (368)
230 2qmh_A HPR kinase/phosphorylas 80.0 0.87 3E-05 37.7 2.3 17 69-85 34-50 (205)
231 3t15_A Ribulose bisphosphate c 79.9 1.2 4.3E-05 39.6 3.6 19 69-87 36-54 (293)
232 3trf_A Shikimate kinase, SK; a 79.9 1 3.5E-05 36.8 2.8 19 69-87 5-23 (185)
233 2px0_A Flagellar biosynthesis 79.8 1.9 6.5E-05 38.4 4.7 38 68-108 104-141 (296)
234 3jvv_A Twitching mobility prot 79.7 1.8 6.3E-05 39.7 4.7 26 69-95 123-148 (356)
235 4fcw_A Chaperone protein CLPB; 79.7 0.3 1E-05 43.9 -0.6 18 70-87 48-65 (311)
236 1hv8_A Putative ATP-dependent 79.7 5.6 0.00019 36.2 8.2 77 100-205 237-314 (367)
237 1qhx_A CPT, protein (chloramph 79.6 0.9 3.1E-05 36.8 2.4 18 69-86 3-20 (178)
238 2iut_A DNA translocase FTSK; n 79.6 1.4 4.9E-05 42.9 4.1 42 69-110 214-255 (574)
239 1sxj_C Activator 1 40 kDa subu 79.3 0.69 2.4E-05 42.3 1.7 17 71-87 48-64 (340)
240 3tr0_A Guanylate kinase, GMP k 79.1 1.2 4.1E-05 37.0 3.1 19 68-86 6-24 (205)
241 3b9p_A CG5977-PA, isoform A; A 79.0 1.1 3.8E-05 39.8 3.0 18 69-86 54-71 (297)
242 3tau_A Guanylate kinase, GMP k 78.8 1.2 4.2E-05 37.2 3.1 19 68-86 7-25 (208)
243 2ius_A DNA translocase FTSK; n 78.7 1.8 6.1E-05 41.8 4.4 28 68-95 166-193 (512)
244 1y63_A LMAJ004144AAA protein; 78.6 1.4 4.9E-05 35.9 3.3 20 68-87 9-28 (184)
245 1d2n_A N-ethylmaleimide-sensit 78.6 1 3.4E-05 39.6 2.5 19 69-87 64-82 (272)
246 2r2a_A Uncharacterized protein 78.4 1.4 4.7E-05 36.7 3.2 19 70-88 6-24 (199)
247 2ehv_A Hypothetical protein PH 78.2 2.2 7.5E-05 36.6 4.6 23 66-88 27-49 (251)
248 1zp6_A Hypothetical protein AT 78.0 1.1 3.6E-05 36.8 2.4 18 68-85 8-25 (191)
249 2j41_A Guanylate kinase; GMP, 77.6 1.4 4.9E-05 36.6 3.1 19 68-86 5-23 (207)
250 1um8_A ATP-dependent CLP prote 77.5 1.5 5.1E-05 40.6 3.5 19 69-87 72-90 (376)
251 1xwi_A SKD1 protein; VPS4B, AA 77.4 1.2 4.1E-05 40.3 2.7 19 69-87 45-63 (322)
252 3lw7_A Adenylate kinase relate 77.2 1 3.5E-05 36.2 2.0 17 71-87 3-19 (179)
253 3exa_A TRNA delta(2)-isopenten 77.2 1.3 4.4E-05 39.6 2.7 18 70-87 4-21 (322)
254 3b85_A Phosphate starvation-in 77.1 1.9 6.4E-05 36.1 3.7 30 54-87 11-40 (208)
255 1njg_A DNA polymerase III subu 77.0 1.5 5.2E-05 37.2 3.2 17 70-86 46-62 (250)
256 1q57_A DNA primase/helicase; d 77.0 2.3 7.7E-05 41.2 4.7 58 60-121 233-290 (503)
257 1lv7_A FTSH; alpha/beta domain 76.9 1.3 4.5E-05 38.4 2.8 18 69-86 45-62 (257)
258 3f9v_A Minichromosome maintena 76.7 1.7 5.9E-05 43.0 3.8 15 71-85 329-343 (595)
259 1sxj_E Activator 1 40 kDa subu 76.6 2 6.8E-05 39.3 4.1 18 70-87 37-54 (354)
260 2ewv_A Twitching motility prot 76.4 1.2 4.2E-05 41.2 2.5 20 67-86 134-153 (372)
261 3foz_A TRNA delta(2)-isopenten 76.4 1.4 4.8E-05 39.3 2.7 18 70-87 11-28 (316)
262 2qp9_X Vacuolar protein sortin 76.2 1.9 6.3E-05 39.7 3.7 19 69-87 84-102 (355)
263 1z6g_A Guanylate kinase; struc 76.0 1.8 6.3E-05 36.5 3.4 19 67-85 21-39 (218)
264 2v54_A DTMP kinase, thymidylat 75.9 1.8 6.1E-05 35.8 3.3 20 68-87 3-22 (204)
265 2gza_A Type IV secretion syste 75.8 1.5 5.1E-05 40.4 2.9 18 68-85 174-191 (361)
266 3cmw_A Protein RECA, recombina 75.7 1.9 6.4E-05 48.0 4.0 45 68-116 1430-1474(1706)
267 3ney_A 55 kDa erythrocyte memb 75.6 1.7 5.7E-05 36.0 2.9 18 68-85 18-35 (197)
268 3pfi_A Holliday junction ATP-d 75.5 2.2 7.7E-05 38.7 4.1 19 69-87 55-73 (338)
269 2z43_A DNA repair and recombin 75.3 2 7E-05 38.8 3.7 44 67-110 105-150 (324)
270 3k1j_A LON protease, ATP-depen 75.2 1 3.5E-05 44.8 1.8 32 55-86 46-77 (604)
271 3vkg_A Dynein heavy chain, cyt 75.1 2.3 7.7E-05 50.3 4.6 52 35-87 873-924 (3245)
272 3vfd_A Spastin; ATPase, microt 74.9 1.7 6E-05 40.4 3.2 19 69-87 148-166 (389)
273 3kb2_A SPBC2 prophage-derived 74.8 1.3 4.5E-05 35.5 2.0 17 71-87 3-19 (173)
274 2r62_A Cell division protease 74.8 1.1 3.8E-05 39.2 1.7 19 69-87 44-62 (268)
275 3a00_A Guanylate kinase, GMP k 74.7 2 6.8E-05 35.1 3.2 16 70-85 2-17 (186)
276 1vma_A Cell division protein F 74.7 2.8 9.6E-05 37.5 4.3 36 69-108 104-139 (306)
277 3cm0_A Adenylate kinase; ATP-b 74.7 1.2 4.2E-05 36.2 1.9 19 69-87 4-22 (186)
278 2ze6_A Isopentenyl transferase 74.7 1.6 5.6E-05 37.8 2.8 17 71-87 3-19 (253)
279 2l82_A Designed protein OR32; 74.6 15 0.0005 26.3 7.0 75 335-412 5-86 (162)
280 2x8a_A Nuclear valosin-contain 74.5 2.4 8.4E-05 37.2 3.9 16 70-85 45-60 (274)
281 1kht_A Adenylate kinase; phosp 74.4 1.4 4.6E-05 36.1 2.1 19 69-87 3-21 (192)
282 3ly5_A ATP-dependent RNA helic 74.4 12 0.00042 32.3 8.4 78 331-412 125-210 (262)
283 2rhm_A Putative kinase; P-loop 74.3 1.2 4.1E-05 36.5 1.7 19 69-87 5-23 (193)
284 1wrb_A DJVLGB; RNA helicase, D 74.1 11 0.00038 32.3 8.0 76 333-412 101-183 (253)
285 1zu4_A FTSY; GTPase, signal re 74.1 3.2 0.00011 37.4 4.6 36 69-108 105-140 (320)
286 3d8b_A Fidgetin-like protein 1 74.0 1.8 6.3E-05 39.7 3.0 19 69-87 117-135 (357)
287 1ixz_A ATP-dependent metallopr 73.6 2.6 8.8E-05 36.4 3.8 17 70-86 50-66 (254)
288 2pt7_A CAG-ALFA; ATPase, prote 73.4 3.2 0.00011 37.6 4.4 18 68-85 170-187 (330)
289 1qde_A EIF4A, translation init 73.4 4.3 0.00015 34.0 5.1 77 331-412 81-164 (224)
290 2v9p_A Replication protein E1; 73.4 2.5 8.5E-05 37.8 3.6 31 57-87 114-144 (305)
291 1zak_A Adenylate kinase; ATP:A 73.4 2.2 7.4E-05 36.0 3.2 20 68-87 4-23 (222)
292 1rj9_A FTSY, signal recognitio 73.3 4.1 0.00014 36.4 5.0 36 69-108 102-137 (304)
293 1ly1_A Polynucleotide kinase; 73.2 1.5 5.2E-05 35.4 2.1 16 71-86 4-19 (181)
294 3cf2_A TER ATPase, transitiona 73.1 2.6 8.9E-05 43.1 4.1 54 25-85 199-254 (806)
295 3c8u_A Fructokinase; YP_612366 73.0 2.4 8.4E-05 35.3 3.4 18 68-85 21-38 (208)
296 1s96_A Guanylate kinase, GMP k 72.5 2.2 7.4E-05 36.1 2.9 20 66-85 13-32 (219)
297 3ice_A Transcription terminati 72.4 4.8 0.00016 37.2 5.3 31 56-87 162-192 (422)
298 1ex7_A Guanylate kinase; subst 72.4 1.8 6.1E-05 35.5 2.3 16 70-85 2-17 (186)
299 1zuh_A Shikimate kinase; alpha 72.4 2.1 7.1E-05 34.2 2.7 19 69-87 7-25 (168)
300 3umf_A Adenylate kinase; rossm 72.3 2.7 9.2E-05 35.4 3.4 20 68-87 28-47 (217)
301 2v3c_C SRP54, signal recogniti 72.3 4.1 0.00014 38.4 5.0 35 70-108 100-134 (432)
302 1nlf_A Regulatory protein REPA 72.2 2.8 9.4E-05 36.9 3.7 24 67-90 28-51 (279)
303 3crm_A TRNA delta(2)-isopenten 72.1 2 6.9E-05 38.6 2.7 18 70-87 6-23 (323)
304 4eun_A Thermoresistant glucoki 72.1 2.3 7.7E-05 35.2 2.9 19 69-87 29-47 (200)
305 1z5z_A Helicase of the SNF2/RA 71.9 38 0.0013 29.4 11.0 60 78-144 93-152 (271)
306 4gp7_A Metallophosphoesterase; 71.9 1.4 5E-05 35.4 1.6 18 68-85 8-25 (171)
307 3b9q_A Chloroplast SRP recepto 71.8 4 0.00014 36.4 4.6 37 68-108 99-135 (302)
308 2wwf_A Thymidilate kinase, put 71.7 2.3 7.7E-05 35.5 2.9 20 68-87 9-28 (212)
309 1znw_A Guanylate kinase, GMP k 71.4 2.4 8.3E-05 35.3 3.0 18 68-85 19-36 (207)
310 3cf2_A TER ATPase, transitiona 71.4 4.1 0.00014 41.7 5.1 18 69-86 511-528 (806)
311 1n0w_A DNA repair protein RAD5 71.2 2.5 8.4E-05 36.1 3.1 26 66-91 21-46 (243)
312 2qt1_A Nicotinamide riboside k 71.2 2.1 7.1E-05 35.6 2.5 22 64-85 16-37 (207)
313 1hqc_A RUVB; extended AAA-ATPa 71.1 2 6.7E-05 38.7 2.5 19 69-87 38-56 (324)
314 2yjt_D ATP-dependent RNA helic 73.7 0.85 2.9E-05 36.8 0.0 76 101-205 30-106 (170)
315 2qby_A CDC6 homolog 1, cell di 70.9 3.1 0.00011 38.3 3.9 19 69-87 45-63 (386)
316 4akg_A Glutathione S-transfera 70.8 2.6 8.8E-05 49.3 3.8 52 35-87 890-941 (2695)
317 1aky_A Adenylate kinase; ATP:A 70.4 2.6 8.8E-05 35.5 3.0 19 69-87 4-22 (220)
318 3t61_A Gluconokinase; PSI-biol 70.4 2.4 8.1E-05 35.1 2.7 19 69-87 18-36 (202)
319 1knq_A Gluconate kinase; ALFA/ 70.3 2.3 7.8E-05 34.2 2.5 19 69-87 8-26 (175)
320 3d3q_A TRNA delta(2)-isopenten 70.2 2.4 8.2E-05 38.4 2.8 18 70-87 8-25 (340)
321 1in4_A RUVB, holliday junction 70.2 2.6 8.8E-05 38.3 3.1 18 70-87 52-69 (334)
322 2oca_A DAR protein, ATP-depend 70.0 21 0.00072 34.3 9.8 77 103-207 349-426 (510)
323 2zan_A Vacuolar protein sortin 69.8 2.3 7.9E-05 40.4 2.8 19 69-87 167-185 (444)
324 3pvs_A Replication-associated 69.8 2.3 7.7E-05 40.5 2.7 18 70-87 51-68 (447)
325 3pxg_A Negative regulator of g 69.8 3.1 0.00011 39.8 3.7 20 68-87 200-219 (468)
326 3uie_A Adenylyl-sulfate kinase 69.4 2.4 8.1E-05 35.1 2.5 20 68-87 24-43 (200)
327 1zd8_A GTP:AMP phosphotransfer 69.4 2.4 8.2E-05 35.9 2.5 18 69-86 7-24 (227)
328 1cke_A CK, MSSA, protein (cyti 69.2 2.9 0.0001 35.2 3.1 19 69-87 5-23 (227)
329 1iy2_A ATP-dependent metallopr 69.2 3.9 0.00013 35.8 4.0 17 70-86 74-90 (278)
330 2c95_A Adenylate kinase 1; tra 69.2 2.6 9E-05 34.5 2.7 20 68-87 8-27 (196)
331 3hu3_A Transitional endoplasmi 69.0 2.3 7.9E-05 40.9 2.6 19 68-86 237-255 (489)
332 3tbk_A RIG-I helicase domain; 69.0 23 0.00078 34.3 9.9 105 80-203 370-476 (555)
333 2j37_W Signal recognition part 69.0 31 0.0011 33.1 10.4 36 70-109 102-137 (504)
334 2i1q_A DNA repair and recombin 68.7 3.8 0.00013 36.9 3.8 25 68-92 97-121 (322)
335 4gl2_A Interferon-induced heli 68.6 7 0.00024 39.5 6.2 78 101-203 400-488 (699)
336 3fmo_B ATP-dependent RNA helic 68.6 4.4 0.00015 36.0 4.2 75 332-413 162-245 (300)
337 1ye8_A Protein THEP1, hypothet 68.4 2.8 9.7E-05 34.0 2.7 15 71-85 2-16 (178)
338 2yvu_A Probable adenylyl-sulfa 68.4 6.1 0.00021 32.0 4.8 20 68-87 12-31 (186)
339 1tev_A UMP-CMP kinase; ploop, 68.2 1.9 6.5E-05 35.3 1.6 19 69-87 3-21 (196)
340 3lnc_A Guanylate kinase, GMP k 68.0 2.4 8.1E-05 36.1 2.2 19 68-86 26-44 (231)
341 1via_A Shikimate kinase; struc 67.8 3.3 0.00011 33.2 3.0 18 70-87 5-22 (175)
342 2iyv_A Shikimate kinase, SK; t 67.8 3.6 0.00012 33.3 3.2 18 70-87 3-20 (184)
343 3b6e_A Interferon-induced heli 67.7 5.2 0.00018 33.2 4.3 78 332-413 82-172 (216)
344 1e6c_A Shikimate kinase; phosp 67.6 3.9 0.00013 32.6 3.3 18 70-87 3-20 (173)
345 3eph_A TRNA isopentenyltransfe 67.5 3.1 0.00011 38.7 2.9 17 71-87 4-20 (409)
346 4a74_A DNA repair and recombin 67.5 2.6 8.8E-05 35.6 2.3 22 66-87 22-43 (231)
347 3tqc_A Pantothenate kinase; bi 67.5 6.2 0.00021 35.5 4.9 16 71-86 94-109 (321)
348 3nwj_A ATSK2; P loop, shikimat 67.4 3.6 0.00012 35.5 3.3 19 69-87 48-66 (250)
349 3eiq_A Eukaryotic initiation f 67.4 8 0.00027 35.9 6.0 77 100-205 279-356 (414)
350 1ak2_A Adenylate kinase isoenz 67.4 3.4 0.00012 35.1 3.1 19 69-87 16-34 (233)
351 2cdn_A Adenylate kinase; phosp 67.4 3.4 0.00012 34.1 3.1 19 69-87 20-38 (201)
352 2og2_A Putative signal recogni 67.2 5.7 0.00019 36.4 4.7 36 69-108 157-192 (359)
353 1g8p_A Magnesium-chelatase 38 67.2 2.2 7.5E-05 38.9 1.9 18 69-86 45-62 (350)
354 3sr0_A Adenylate kinase; phosp 67.0 3.8 0.00013 34.2 3.2 18 71-88 2-19 (206)
355 1g41_A Heat shock protein HSLU 66.8 3.8 0.00013 38.7 3.5 18 69-86 50-67 (444)
356 3fb4_A Adenylate kinase; psych 66.8 3.1 0.00011 34.8 2.7 17 71-87 2-18 (216)
357 2bdt_A BH3686; alpha-beta prot 66.7 3.3 0.00011 33.8 2.8 18 70-87 3-20 (189)
358 1svm_A Large T antigen; AAA+ f 66.7 4.2 0.00014 37.5 3.7 30 57-86 157-186 (377)
359 1v5w_A DMC1, meiotic recombina 66.7 2.9 9.8E-05 38.2 2.6 45 66-110 119-165 (343)
360 2i3b_A HCR-ntpase, human cance 66.6 3.9 0.00013 33.5 3.2 19 69-87 1-19 (189)
361 1yks_A Genome polyprotein [con 66.3 17 0.00058 34.3 8.0 68 101-202 177-245 (440)
362 3dl0_A Adenylate kinase; phosp 66.2 3.2 0.00011 34.7 2.7 17 71-87 2-18 (216)
363 3nwn_A Kinesin-like protein KI 66.2 3.8 0.00013 37.5 3.2 33 54-86 84-122 (359)
364 1nn5_A Similar to deoxythymidy 66.0 3.5 0.00012 34.4 2.8 20 68-87 8-27 (215)
365 2plr_A DTMP kinase, probable t 66.0 3.2 0.00011 34.5 2.6 19 69-87 4-22 (213)
366 1gvn_B Zeta; postsegregational 65.9 2.4 8.2E-05 37.5 1.9 18 69-86 33-50 (287)
367 2vli_A Antibiotic resistance p 65.9 2.1 7.3E-05 34.6 1.5 19 69-87 5-23 (183)
368 3a4m_A L-seryl-tRNA(SEC) kinas 65.8 2.3 8E-05 37.0 1.7 19 69-87 4-22 (260)
369 3pxi_A Negative regulator of g 65.7 1.3 4.3E-05 45.6 -0.0 17 71-87 523-539 (758)
370 1c9k_A COBU, adenosylcobinamid 65.4 4.5 0.00016 32.8 3.3 44 72-123 2-45 (180)
371 2pt5_A Shikimate kinase, SK; a 65.2 2.7 9.4E-05 33.4 2.0 17 71-87 2-18 (168)
372 1fnn_A CDC6P, cell division co 65.2 2.9 0.0001 38.6 2.4 16 71-86 46-61 (389)
373 1nij_A Hypothetical protein YJ 64.9 5.6 0.00019 35.8 4.1 15 71-85 6-20 (318)
374 3e70_C DPA, signal recognition 64.8 6 0.0002 35.7 4.3 36 69-108 129-164 (328)
375 1bg2_A Kinesin; motor protein, 64.8 4.7 0.00016 36.3 3.5 35 52-86 55-95 (325)
376 1nks_A Adenylate kinase; therm 64.7 3.3 0.00011 33.7 2.4 17 71-87 3-19 (194)
377 3bs4_A Uncharacterized protein 64.7 8.5 0.00029 33.3 5.0 52 68-124 20-71 (260)
378 3m6a_A ATP-dependent protease 64.7 5.3 0.00018 39.0 4.2 20 68-87 107-126 (543)
379 3tif_A Uncharacterized ABC tra 64.5 2.9 9.8E-05 35.8 2.0 19 66-84 28-46 (235)
380 2pez_A Bifunctional 3'-phospho 64.4 3.4 0.00012 33.3 2.4 19 69-87 5-23 (179)
381 1sxj_B Activator 1 37 kDa subu 64.1 6.1 0.00021 35.3 4.3 18 70-87 43-60 (323)
382 1sxj_A Activator 1 95 kDa subu 64.0 3.9 0.00013 39.7 3.1 18 70-87 78-95 (516)
383 2z0h_A DTMP kinase, thymidylat 63.9 3.1 0.00011 34.1 2.1 16 72-87 3-18 (197)
384 1fuu_A Yeast initiation factor 63.9 17 0.0006 33.2 7.6 77 331-412 88-171 (394)
385 3cmw_A Protein RECA, recombina 63.9 6.8 0.00023 43.6 5.2 41 66-110 31-71 (1706)
386 3aez_A Pantothenate kinase; tr 63.8 8.5 0.00029 34.4 5.1 21 66-86 87-107 (312)
387 1f2t_A RAD50 ABC-ATPase; DNA d 63.7 5.6 0.00019 31.0 3.5 16 70-85 24-39 (149)
388 1ukz_A Uridylate kinase; trans 63.7 3.1 0.00011 34.4 2.1 17 70-86 16-32 (203)
389 3be4_A Adenylate kinase; malar 63.4 3.5 0.00012 34.6 2.3 19 69-87 5-23 (217)
390 2jaq_A Deoxyguanosine kinase; 63.4 4 0.00014 33.6 2.7 17 71-87 2-18 (205)
391 2bwj_A Adenylate kinase 5; pho 63.4 3.7 0.00013 33.7 2.5 19 69-87 12-30 (199)
392 1qf9_A UMP/CMP kinase, protein 63.3 3.7 0.00013 33.4 2.5 18 70-87 7-24 (194)
393 1goj_A Kinesin, kinesin heavy 63.3 5.1 0.00018 36.6 3.5 35 52-86 58-98 (355)
394 1jr3_A DNA polymerase III subu 62.8 4.6 0.00016 37.0 3.3 18 70-87 39-56 (373)
395 2ce7_A Cell division protein F 62.8 4.5 0.00015 38.7 3.2 18 69-86 49-66 (476)
396 1gku_B Reverse gyrase, TOP-RG; 62.8 9 0.00031 40.9 5.8 80 331-412 98-184 (1054)
397 1vht_A Dephospho-COA kinase; s 62.7 3.1 0.0001 34.9 1.9 19 69-87 4-22 (218)
398 1xjc_A MOBB protein homolog; s 62.7 11 0.00037 30.2 5.0 35 70-108 5-39 (169)
399 3lre_A Kinesin-like protein KI 62.7 5.3 0.00018 36.5 3.5 36 51-86 82-123 (355)
400 3cmu_A Protein RECA, recombina 62.6 6.1 0.00021 44.7 4.5 48 59-110 1069-1118(2050)
401 2h58_A Kinesin-like protein KI 62.6 5.4 0.00018 36.0 3.5 19 68-86 78-98 (330)
402 3asz_A Uridine kinase; cytidin 62.6 3.5 0.00012 34.3 2.2 18 69-86 6-23 (211)
403 2y65_A Kinesin, kinesin heavy 62.5 5.3 0.00018 36.6 3.5 36 51-86 61-102 (365)
404 2vvg_A Kinesin-2; motor protei 62.5 5.4 0.00018 36.3 3.5 36 51-86 66-107 (350)
405 2pbr_A DTMP kinase, thymidylat 62.4 3.4 0.00012 33.7 2.1 16 72-87 3-18 (195)
406 1m7g_A Adenylylsulfate kinase; 62.3 3.2 0.00011 34.6 1.9 20 68-87 24-43 (211)
407 1ls1_A Signal recognition part 62.3 7.4 0.00025 34.5 4.4 36 69-108 98-133 (295)
408 1jjv_A Dephospho-COA kinase; P 62.3 4.4 0.00015 33.6 2.7 16 71-86 4-19 (206)
409 4e22_A Cytidylate kinase; P-lo 62.2 4.7 0.00016 34.8 3.0 19 68-86 26-44 (252)
410 1j8m_F SRP54, signal recogniti 62.2 6.2 0.00021 35.1 3.8 36 69-108 98-133 (297)
411 2xxa_A Signal recognition part 62.2 7.6 0.00026 36.6 4.6 36 70-108 101-136 (433)
412 4a14_A Kinesin, kinesin-like p 62.1 5.5 0.00019 36.2 3.5 36 51-86 60-101 (344)
413 2p5t_B PEZT; postsegregational 62.0 2.7 9.1E-05 36.4 1.4 19 69-87 32-50 (253)
414 4etp_A Kinesin-like protein KA 62.0 5.3 0.00018 37.2 3.4 19 68-86 138-158 (403)
415 3b6u_A Kinesin-like protein KI 61.9 5.1 0.00017 36.8 3.2 36 51-86 78-119 (372)
416 2cbz_A Multidrug resistance-as 61.9 3.4 0.00012 35.3 2.0 19 67-85 29-47 (237)
417 2yhs_A FTSY, cell division pro 61.8 8.2 0.00028 36.9 4.7 35 69-107 293-327 (503)
418 1htw_A HI0065; nucleotide-bind 61.8 4.9 0.00017 31.8 2.8 20 66-85 30-49 (158)
419 3t0q_A AGR253WP; kinesin, alph 61.6 5.6 0.00019 36.2 3.5 22 65-86 80-103 (349)
420 2zfi_A Kinesin-like protein KI 61.5 5.7 0.00019 36.5 3.5 34 53-86 68-107 (366)
421 1e4v_A Adenylate kinase; trans 61.4 4 0.00014 34.1 2.4 17 71-87 2-18 (214)
422 3tlx_A Adenylate kinase 2; str 61.3 4.4 0.00015 34.7 2.7 19 69-87 29-47 (243)
423 4anj_A Unconventional myosin-V 61.3 4 0.00014 43.1 2.7 66 28-95 99-169 (1052)
424 3dc4_A Kinesin-like protein NO 61.3 4.6 0.00016 36.7 2.8 35 51-85 71-111 (344)
425 1f9v_A Kinesin-like protein KA 61.2 5.1 0.00018 36.4 3.1 23 64-86 78-102 (347)
426 1t5c_A CENP-E protein, centrom 61.1 5.3 0.00018 36.3 3.2 35 52-86 55-95 (349)
427 3bfn_A Kinesin-like protein KI 60.8 5.5 0.00019 36.8 3.3 36 51-86 75-116 (388)
428 3pxi_A Negative regulator of g 60.8 5.5 0.00019 40.8 3.7 20 68-87 200-219 (758)
429 1v8k_A Kinesin-like protein KI 60.7 5.1 0.00018 37.3 3.1 35 52-86 132-172 (410)
430 2bbw_A Adenylate kinase 4, AK4 60.6 5.1 0.00017 34.3 3.0 18 69-86 27-44 (246)
431 3lda_A DNA repair protein RAD5 60.5 5.8 0.0002 37.0 3.4 42 68-109 177-220 (400)
432 1z3i_X Similar to RAD54-like; 60.3 77 0.0026 31.5 11.9 98 78-207 396-497 (644)
433 3gbj_A KIF13B protein; kinesin 60.2 5.6 0.00019 36.3 3.2 34 53-86 71-110 (354)
434 2nr8_A Kinesin-like protein KI 60.1 5.7 0.00019 36.3 3.2 33 54-86 83-121 (358)
435 3nh6_A ATP-binding cassette SU 60.1 3.8 0.00013 36.6 2.0 20 66-85 77-96 (306)
436 2vhj_A Ntpase P4, P4; non- hyd 60.0 4.7 0.00016 36.2 2.6 23 69-91 123-145 (331)
437 3foj_A Uncharacterized protein 60.0 10 0.00035 27.0 4.1 37 331-370 55-91 (100)
438 2f1r_A Molybdopterin-guanine d 59.9 3.5 0.00012 33.2 1.6 18 70-87 3-20 (171)
439 4eaq_A DTMP kinase, thymidylat 59.8 5.5 0.00019 33.8 3.0 20 68-87 25-44 (229)
440 2jeo_A Uridine-cytidine kinase 59.7 4.7 0.00016 34.6 2.6 19 68-86 24-42 (245)
441 3u06_A Protein claret segregat 59.3 5.9 0.0002 37.0 3.2 19 68-86 136-156 (412)
442 2if2_A Dephospho-COA kinase; a 59.2 4.8 0.00016 33.2 2.5 16 71-86 3-18 (204)
443 1sgw_A Putative ABC transporte 59.0 5.2 0.00018 33.6 2.6 19 67-85 33-51 (214)
444 2ghi_A Transport protein; mult 58.8 4.1 0.00014 35.4 2.0 20 66-85 43-62 (260)
445 2xb4_A Adenylate kinase; ATP-b 58.8 5.4 0.00018 33.6 2.7 17 71-87 2-18 (223)
446 1x88_A Kinesin-like protein KI 58.7 5.4 0.00018 36.5 2.8 35 52-86 66-106 (359)
447 1r6b_X CLPA protein; AAA+, N-t 58.5 1.6 5.6E-05 44.7 -0.7 17 71-87 490-506 (758)
448 2heh_A KIF2C protein; kinesin, 58.5 6.1 0.00021 36.5 3.1 35 52-86 112-152 (387)
449 3kta_A Chromosome segregation 58.4 5.5 0.00019 32.1 2.6 15 71-85 28-42 (182)
450 3zq6_A Putative arsenical pump 58.4 10 0.00036 34.0 4.7 34 71-108 16-49 (324)
451 3tqf_A HPR(Ser) kinase; transf 58.3 4.7 0.00016 32.4 2.1 19 69-87 16-34 (181)
452 2qm8_A GTPase/ATPase; G protei 58.2 14 0.00047 33.5 5.5 29 57-85 43-71 (337)
453 2owm_A Nckin3-434, related to 58.2 6.9 0.00024 36.9 3.5 34 53-86 115-154 (443)
454 3gk5_A Uncharacterized rhodane 58.2 9.7 0.00033 27.6 3.7 38 331-371 54-91 (108)
455 3eme_A Rhodanese-like domain p 57.8 11 0.00036 27.1 3.9 36 332-370 56-91 (103)
456 3p32_A Probable GTPase RV1496/ 57.6 12 0.0004 34.2 5.0 36 69-108 79-114 (355)
457 1tf5_A Preprotein translocase 57.4 24 0.00082 36.1 7.4 77 328-410 120-210 (844)
458 2wbe_C Bipolar kinesin KRP-130 57.2 5.8 0.0002 36.5 2.8 34 52-85 78-117 (373)
459 1b0u_A Histidine permease; ABC 57.1 4.6 0.00016 35.2 2.0 20 66-85 29-48 (262)
460 3cob_A Kinesin heavy chain-lik 56.7 5.5 0.00019 36.5 2.5 19 68-86 77-97 (369)
461 1mv5_A LMRA, multidrug resista 56.4 4 0.00014 35.1 1.5 19 67-85 26-44 (243)
462 3dkp_A Probable ATP-dependent 56.4 8.8 0.0003 32.7 3.8 78 332-412 98-184 (245)
463 3qks_A DNA double-strand break 56.3 8.8 0.0003 31.8 3.6 26 70-97 24-49 (203)
464 2ffh_A Protein (FFH); SRP54, s 56.3 9 0.00031 36.0 4.0 36 69-108 98-133 (425)
465 1pzn_A RAD51, DNA repair and r 56.2 6.3 0.00022 36.0 2.9 24 27-50 35-58 (349)
466 2rep_A Kinesin-like protein KI 56.1 6.7 0.00023 36.1 3.0 36 51-86 93-133 (376)
467 2grj_A Dephospho-COA kinase; T 56.1 6.7 0.00023 32.2 2.8 18 70-87 13-30 (192)
468 2ff7_A Alpha-hemolysin translo 56.1 5.3 0.00018 34.4 2.2 18 68-85 34-51 (247)
469 1uf9_A TT1252 protein; P-loop, 56.1 5.8 0.0002 32.6 2.4 18 70-87 9-26 (203)
470 1lkx_A Myosin IE heavy chain; 56.0 9 0.00031 38.5 4.1 67 27-95 49-119 (697)
471 3gfo_A Cobalt import ATP-bindi 56.0 5.2 0.00018 35.1 2.2 19 67-85 32-50 (275)
472 1vpl_A ABC transporter, ATP-bi 56.0 4.9 0.00017 34.8 2.0 20 66-85 38-57 (256)
473 2zu0_C Probable ATP-dependent 55.9 6.2 0.00021 34.4 2.7 20 66-85 43-62 (267)
474 1q0u_A Bstdead; DEAD protein, 55.9 6.1 0.00021 33.0 2.6 77 332-412 72-159 (219)
475 2ixe_A Antigen peptide transpo 55.8 5 0.00017 35.1 2.0 20 66-85 42-61 (271)
476 2olj_A Amino acid ABC transpor 55.8 5 0.00017 35.0 2.0 20 66-85 47-66 (263)
477 2pze_A Cystic fibrosis transme 55.7 5.4 0.00019 33.8 2.2 18 68-85 33-50 (229)
478 1ypw_A Transitional endoplasmi 55.5 5.9 0.0002 40.8 2.8 20 67-86 236-255 (806)
479 3qf7_A RAD50; ABC-ATPase, ATPa 55.4 6.7 0.00023 36.1 2.9 16 71-86 25-40 (365)
480 1tf7_A KAIC; homohexamer, hexa 55.3 7.8 0.00027 37.7 3.5 40 57-96 26-66 (525)
481 2yz2_A Putative ABC transporte 55.1 5.2 0.00018 34.9 2.0 31 195-225 154-184 (266)
482 2ga8_A Hypothetical 39.9 kDa p 55.0 10 0.00035 34.5 4.0 17 71-87 26-42 (359)
483 3iwh_A Rhodanese-like domain p 54.7 13 0.00045 26.8 3.9 36 332-370 56-91 (103)
484 2jlq_A Serine protease subunit 54.4 37 0.0013 32.1 8.1 36 101-140 188-223 (451)
485 1ji0_A ABC transporter; ATP bi 54.3 5.9 0.0002 33.9 2.2 18 68-85 31-48 (240)
486 3dmq_A RNA polymerase-associat 54.2 35 0.0012 36.0 8.5 80 100-207 502-584 (968)
487 2pcj_A ABC transporter, lipopr 54.2 5.3 0.00018 33.8 1.9 18 68-85 29-46 (224)
488 1rz3_A Hypothetical protein rb 54.2 6.5 0.00022 32.4 2.4 19 69-87 22-40 (201)
489 3auy_A DNA double-strand break 54.1 6.1 0.00021 36.4 2.4 16 70-85 26-41 (371)
490 1w7j_A Myosin VA; motor protei 54.0 11 0.00038 38.5 4.4 27 68-95 155-181 (795)
491 1g6h_A High-affinity branched- 53.8 6 0.00021 34.2 2.2 20 66-85 30-49 (257)
492 1r6b_X CLPA protein; AAA+, N-t 53.8 11 0.00036 38.7 4.4 20 68-87 206-225 (758)
493 2dhr_A FTSH; AAA+ protein, hex 53.7 7.8 0.00027 37.3 3.2 17 70-86 65-81 (499)
494 2wv9_A Flavivirin protease NS2 53.7 36 0.0012 34.1 8.1 34 101-138 410-443 (673)
495 2p6r_A Afuhel308 helicase; pro 53.6 14 0.00048 37.4 5.2 76 331-413 67-148 (702)
496 4g1u_C Hemin import ATP-bindin 53.6 6 0.0002 34.5 2.2 19 67-85 35-53 (266)
497 2fsf_A Preprotein translocase 53.5 27 0.00091 35.8 7.0 59 329-393 112-171 (853)
498 1w9i_A Myosin II heavy chain; 53.3 12 0.0004 38.1 4.4 32 57-89 161-192 (770)
499 1ihu_A Arsenical pump-driving 53.2 14 0.00047 36.5 5.0 35 70-108 9-43 (589)
500 1uj2_A Uridine-cytidine kinase 53.0 6 0.00021 34.1 2.1 17 71-87 24-40 (252)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-53 Score=414.04 Aligned_cols=346 Identities=26% Similarity=0.428 Sum_probs=296.0
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc----cCCccEEEEcc
Q 012434 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLP 109 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~----~~~~~~lil~P 109 (464)
+|++.+.+.++++||..|+++|.++++.++. ++++++++|||+|||++|+++++..+.... ..++++||++|
T Consensus 62 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~P 137 (434)
T 2db3_A 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSP 137 (434)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEec
Confidence 4999999999999999999999999998876 899999999999999999999999887643 23568999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhc
Q 012434 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (464)
Q Consensus 110 ~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~ 189 (464)
|++|+.|+++.+++++...++++..++|+.....+.. .+..+++|+|+||++|.+.+.+
T Consensus 138 treLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---------------------~l~~~~~Ivv~Tp~~l~~~l~~ 196 (434)
T 2db3_A 138 TRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---------------------CITRGCHVVIATPGRLLDFVDR 196 (434)
T ss_dssp SHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---------------------HHTTCCSEEEECHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---------------------HhhcCCCEEEEChHHHHHHHHh
Confidence 9999999999999999888899999999887655432 2346789999999999999887
Q ss_pred CCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceee
Q 012434 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (464)
Q Consensus 190 ~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
.. ..+.+++++|+||||++.+.+|...+..++...... +..+.
T Consensus 197 ~~-~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~------------------------------------~~~q~ 239 (434)
T 2db3_A 197 TF-ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR------------------------------------PEHQT 239 (434)
T ss_dssp TS-CCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC------------------------------------SSCEE
T ss_pred CC-cccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC------------------------------------CCceE
Confidence 54 668899999999999999999998888888754211 33489
Q ss_pred EEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHH
Q 012434 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (464)
Q Consensus 270 i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (464)
+++|||++..........+.++..+....... ....+......+....+...+.+++..... ++||||++++.++.++
T Consensus 240 l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~ 317 (434)
T 2db3_A 240 LMFSATFPEEIQRMAGEFLKNYVFVAIGIVGG-ACSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLA 317 (434)
T ss_dssp EEEESCCCHHHHHHHHTTCSSCEEEEESSTTC-CCTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHhccCCEEEEeccccc-cccccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHH
Confidence 99999998887777777777777666554332 223444455556667788888888877654 4999999999999999
Q ss_pred HHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcC
Q 012434 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (464)
Q Consensus 350 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 429 (464)
+.|.+.+ +.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.
T Consensus 318 ~~L~~~~---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~ 394 (434)
T 2db3_A 318 SFLSEKE---FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRV 394 (434)
T ss_dssp HHHHHTT---CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCT
T ss_pred HHHHhCC---CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccC
Confidence 9999876 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeeCccccc
Q 012434 430 GQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 430 g~~g~~~~~~~~~~~~~ 446 (464)
|+.|.+++|++.++...
T Consensus 395 g~~G~a~~~~~~~~~~~ 411 (434)
T 2db3_A 395 GNNGRATSFFDPEKDRA 411 (434)
T ss_dssp TCCEEEEEEECTTTCGG
T ss_pred CCCCEEEEEEeccccHH
Confidence 99999999998654433
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-51 Score=397.41 Aligned_cols=361 Identities=27% Similarity=0.429 Sum_probs=295.4
Q ss_pred CCCccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 012434 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
..|....+|++++ |++.+.+.++.+||..|+++|.++++.+.. ++++++.+|||+|||++++++++..+.
T Consensus 9 ~~p~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~ 78 (417)
T 2i4i_A 9 NCPPHIESFSDVE------MGEIIMGNIELTRYTRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIY 78 (417)
T ss_dssp TCCCCCSSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCcccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 3455556676663 999999999999999999999999998876 899999999999999999999998886
Q ss_pred hhcc-----------------CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccc
Q 012434 96 NRAV-----------------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158 (464)
Q Consensus 96 ~~~~-----------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~ 158 (464)
.... .++++||++|+++|+.|+++.+++++...++++..++|+.........
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------- 147 (417)
T 2i4i_A 79 SDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD----------- 147 (417)
T ss_dssp HHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH-----------
T ss_pred hccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH-----------
Confidence 5421 125799999999999999999999988888999999998876554322
Q ss_pred cCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhcccccccccccccc
Q 012434 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 238 (464)
Q Consensus 159 ~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (464)
+..+++|+|+||++|.+.+.... +.+.++++||+||||++.+.++...+..+........
T Consensus 148 ----------~~~~~~I~v~Tp~~l~~~l~~~~-~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~--------- 207 (417)
T 2i4i_A 148 ----------LERGCHLLVATPGRLVDMMERGK-IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP--------- 207 (417)
T ss_dssp ----------HTTCCSEEEECHHHHHHHHHTTS-BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC---------
T ss_pred ----------hhCCCCEEEEChHHHHHHHHcCC-cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC---------
Confidence 34567999999999999887644 6688899999999999998888888877775322110
Q ss_pred ccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCc
Q 012434 239 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL 318 (464)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (464)
....+.+++|||++..........+.++..+...... .....+...........
T Consensus 208 -------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ 261 (417)
T 2i4i_A 208 -------------------------KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESD 261 (417)
T ss_dssp -------------------------BTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGG
T ss_pred -------------------------cCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCccCceEEEEEeccHh
Confidence 0234789999999776666666666666555443322 22334444455566677
Q ss_pred hHHHHHHHHHhh-CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccc
Q 012434 319 KPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397 (464)
Q Consensus 319 ~~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~ 397 (464)
+...+..++... .++++||||++++.++.+++.|++.+ +.+..+||+++..+|.++++.|++|+.+|||||+++++
T Consensus 262 ~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 338 (417)
T 2i4i_A 262 KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 338 (417)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHT
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC---CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 788888888776 56789999999999999999999876 88999999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012434 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 398 Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
|+|+|++++||+++.|.+...|+||+||+||.|+.|.+++|++..+...
T Consensus 339 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 339 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp TSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred CCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHH
Confidence 9999999999999999999999999999999999999999998776554
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.6e-51 Score=397.14 Aligned_cols=349 Identities=25% Similarity=0.433 Sum_probs=293.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
|+++ +|++.+.+.++++||..|+++|.++++.++. ++++++.+|||+|||+++++++++.+... ..+.++||++
T Consensus 39 f~~~-~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~ 112 (410)
T 2j0s_A 39 FDTM-GLREDLLRGIYAYGFEKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILA 112 (410)
T ss_dssp GGGG-CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTT-SCSCCEEEEC
T ss_pred Hhhc-CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhc-cCCceEEEEc
Confidence 4445 3999999999999999999999999998886 89999999999999999999999877543 2456899999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhh
Q 012434 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~ 188 (464)
|+++|+.|+.+.+.+++...++.+...+|+......... +..+++|+|+||+++.+.+.
T Consensus 113 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~ivv~Tp~~l~~~l~ 171 (410)
T 2j0s_A 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---------------------LDYGQHVVAGTPGRVFDMIR 171 (410)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---------------------HHHCCSEEEECHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---------------------hhcCCCEEEcCHHHHHHHHH
Confidence 999999999999999988888999999998876554322 34567999999999999887
Q ss_pred cCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCcee
Q 012434 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (464)
Q Consensus 189 ~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
... +.+.++++||+||||++.+.++...+..++..+. +..+
T Consensus 172 ~~~-~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~ 212 (410)
T 2j0s_A 172 RRS-LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP--------------------------------------PATQ 212 (410)
T ss_dssp TTS-SCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC--------------------------------------TTCE
T ss_pred hCC-ccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCc--------------------------------------cCce
Confidence 743 6678899999999999988888877777765543 2338
Q ss_pred eEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeecc-CCchHHHHHHHHHhhCCCeEEEEecChhhHHH
Q 012434 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (464)
.+++|||++..........+.++..+......... ..+........ ...+...+..++.....+++||||++++.++.
T Consensus 213 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~ 291 (410)
T 2j0s_A 213 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW 291 (410)
T ss_dssp EEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSC-TTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccC-CCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHH
Confidence 89999999877666666677777665544333222 33333333333 44478888888888888899999999999999
Q ss_pred HHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhh
Q 012434 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (464)
Q Consensus 348 l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~ 427 (464)
+++.|.+.+ +.+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|.+...|+||+||+|
T Consensus 292 l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~g 368 (410)
T 2j0s_A 292 LTEKMREAN---FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSG 368 (410)
T ss_dssp HHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSS
T ss_pred HHHHHHhCC---CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhccccc
Confidence 999999876 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeeCcccccc
Q 012434 428 RAGQLGRCFTLLHKDEKKGA 447 (464)
Q Consensus 428 R~g~~g~~~~~~~~~~~~~~ 447 (464)
|.|+.|.+++|+++++...+
T Consensus 369 R~g~~g~~~~~~~~~~~~~~ 388 (410)
T 2j0s_A 369 RYGRKGVAINFVKNDDIRIL 388 (410)
T ss_dssp GGGCCEEEEEEEEGGGHHHH
T ss_pred CCCCceEEEEEecHHHHHHH
Confidence 99999999999988775443
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=8.2e-51 Score=391.29 Aligned_cols=348 Identities=24% Similarity=0.356 Sum_probs=291.3
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012434 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
+|++.+.+.++++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+... ..+.++||++|+++|
T Consensus 14 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~L 88 (391)
T 1xti_A 14 LLKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQVSVLVMCHTREL 88 (391)
T ss_dssp CCCHHHHHHHHHHSCCSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCC-TTCCCEEEECSCHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhccc-CCCeeEEEECCCHHH
Confidence 3999999999999999999999999988776 79999999999999999999998876543 235589999999999
Q ss_pred HHHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCC
Q 012434 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (464)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~ 192 (464)
+.|+.+.++++.... ++++..++|+.........+. ...++|+|+||+++.+.+....
T Consensus 89 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------~~~~~iiv~T~~~l~~~~~~~~- 147 (391)
T 1xti_A 89 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVVGTPGRILALARNKS- 147 (391)
T ss_dssp HHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH--------------------HSCCSEEEECHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh--------------------cCCCCEEEECHHHHHHHHHcCC-
Confidence 999999999998765 788999999887654432221 2346999999999999887643
Q ss_pred cCCCCccEEEEehhhHhhh-HhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEE
Q 012434 193 FTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (464)
Q Consensus 193 ~~~~~~~~iIvDE~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (464)
..+.++++||+||||++.+ .++...+..++.... ...+.++
T Consensus 148 ~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~ 189 (391)
T 1xti_A 148 LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--------------------------------------HEKQVMM 189 (391)
T ss_dssp SCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC--------------------------------------SSSEEEE
T ss_pred ccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC--------------------------------------CCceEEE
Confidence 5678899999999999976 466666666655433 2338899
Q ss_pred eeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHH
Q 012434 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351 (464)
Q Consensus 272 ~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~ 351 (464)
+|||++..........+..+..+...............+........+...+..++....++++||||++++.++.+++.
T Consensus 190 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~ 269 (391)
T 1xti_A 190 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQL 269 (391)
T ss_dssp EESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHH
T ss_pred EEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHH
Confidence 99999888777776677777666554443334445555666667777888888888888889999999999999999999
Q ss_pred HhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCC
Q 012434 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (464)
Q Consensus 352 l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~ 431 (464)
|++.+ +.+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|.++..|+||+||+||.|+
T Consensus 270 L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 346 (391)
T 1xti_A 270 LVEQN---FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGT 346 (391)
T ss_dssp HHHTT---CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCC
T ss_pred HHhCC---CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCC
Confidence 99876 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeeCcccccch
Q 012434 432 LGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 432 ~g~~~~~~~~~~~~~~~ 448 (464)
.|.+++++++++...++
T Consensus 347 ~g~~~~~~~~~~~~~~~ 363 (391)
T 1xti_A 347 KGLAITFVSDENDAKIL 363 (391)
T ss_dssp CCEEEEEECSHHHHHHH
T ss_pred ceEEEEEEcccchHHHH
Confidence 99999999877654433
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.6e-50 Score=390.33 Aligned_cols=348 Identities=27% Similarity=0.485 Sum_probs=292.0
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE
Q 012434 28 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (464)
Q Consensus 28 ~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil 107 (464)
+|++++ |++.+.+.+.++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+... ..+.++||+
T Consensus 22 ~f~~~~-l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil 95 (400)
T 1s2m_A 22 TFEDFY-LKRELLMGIFEAGFEKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPK-LNKIQALIM 95 (400)
T ss_dssp CGGGGC-CCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTT-SCSCCEEEE
T ss_pred ChhhcC-CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhc-cCCccEEEE
Confidence 344453 999999999999999999999999998876 78999999999999999999999877643 244589999
Q ss_pred cccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhh
Q 012434 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (464)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l 187 (464)
+|+++|+.|+.+.++.++...++.+....|+........ .+..+++|+|+||+++.+.+
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~T~~~l~~~~ 154 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---------------------RLNETVHILVGTPGRVLDLA 154 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---------------------HTTSCCSEEEECHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---------------------HhcCCCCEEEEchHHHHHHH
Confidence 999999999999999998888899999999877554422 23456799999999999888
Q ss_pred hcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCce
Q 012434 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (464)
Q Consensus 188 ~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
.... ..+.++++||+||||++.+..+...+..+...+. +..
T Consensus 155 ~~~~-~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~--------------------------------------~~~ 195 (400)
T 1s2m_A 155 SRKV-ADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP--------------------------------------PTH 195 (400)
T ss_dssp HTTC-SCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC--------------------------------------SSC
T ss_pred HhCC-cccccCCEEEEeCchHhhhhchHHHHHHHHHhCC--------------------------------------cCc
Confidence 7643 5678899999999999998888887777765543 233
Q ss_pred eeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHH
Q 012434 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (464)
Q Consensus 268 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (464)
+.+++|||++..........+..+..+..... .....+..+........+...+..++.....+++||||++++.++.
T Consensus 196 ~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~ 273 (400)
T 1s2m_A 196 QSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVEL 273 (400)
T ss_dssp EEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHH
T ss_pred eEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHH
Confidence 78999999987666666556666554433322 2223344455556667788888888888888899999999999999
Q ss_pred HHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhh
Q 012434 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (464)
Q Consensus 348 l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~ 427 (464)
+++.|++.+ +.+..+||+|+..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|.+...|+||+||+|
T Consensus 274 l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~g 350 (400)
T 1s2m_A 274 LAKKITDLG---YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSG 350 (400)
T ss_dssp HHHHHHHHT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSS
T ss_pred HHHHHHhcC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhc
Confidence 999999876 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeeCccccc
Q 012434 428 RAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 428 R~g~~g~~~~~~~~~~~~~ 446 (464)
|.|+.|.|+++++.++...
T Consensus 351 R~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 351 RFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp CTTCCEEEEEEECGGGHHH
T ss_pred CCCCCceEEEEeccchHHH
Confidence 9999999999998887654
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.1e-50 Score=391.41 Aligned_cols=351 Identities=25% Similarity=0.416 Sum_probs=281.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
|+.+ ++++.+.+.++++||..|+++|.+++..++. ++++++.+|||+|||+++++++++.+.... .+.++||++
T Consensus 42 f~~~-~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~ 115 (414)
T 3eiq_A 42 FDDM-NLSESLLRGIYAYGFEKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDL-KATQALVLA 115 (414)
T ss_dssp GGGG-CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTS-CSCCEEEEC
T ss_pred HhhC-CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcC-CceeEEEEe
Confidence 4444 3999999999999999999999999988886 889999999999999999999998876542 455899999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhh
Q 012434 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~ 188 (464)
|+++|+.|+.+.++.++...+..+....|+.........+ ...+++|+|+||+++.+.+.
T Consensus 116 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~iiv~T~~~l~~~l~ 175 (414)
T 3eiq_A 116 PTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL--------------------QMEAPHIIVGTPGRVFDMLN 175 (414)
T ss_dssp SSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHH--------------------TTTCCSEEEECHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHH--------------------hcCCCCEEEECHHHHHHHHH
Confidence 9999999999999999888889999999988765543322 12557999999999999887
Q ss_pred cCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCcee
Q 012434 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (464)
Q Consensus 189 ~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
... +.+..+++||+||||++.+.++...+..++..+.. ..+
T Consensus 176 ~~~-~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~ 216 (414)
T 3eiq_A 176 RRY-LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS--------------------------------------NTQ 216 (414)
T ss_dssp HTS-SCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCT--------------------------------------TCE
T ss_pred cCC-cccccCcEEEEECHHHhhccCcHHHHHHHHHhCCC--------------------------------------CCe
Confidence 743 66788999999999999888888877777765532 338
Q ss_pred eEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHH
Q 012434 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l 348 (464)
.+++|||++..........+.++..+...............+........+...+..++.....+++||||++++.++.+
T Consensus 217 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 296 (414)
T 3eiq_A 217 VVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWL 296 (414)
T ss_dssp EEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHH
T ss_pred EEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHH
Confidence 89999999877777777777777666554444333333333333444556888888888888889999999999999999
Q ss_pred HHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhc
Q 012434 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (464)
Q Consensus 349 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R 428 (464)
++.|.+.+ +.+..+||+|+..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|.+...|+||+||+||
T Consensus 297 ~~~l~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR 373 (414)
T 3eiq_A 297 TEKMHARD---FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 373 (414)
T ss_dssp HHHHHTTT---CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC--
T ss_pred HHHHHhcC---CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccC
Confidence 99999876 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeeCcccccc
Q 012434 429 AGQLGRCFTLLHKDEKKGA 447 (464)
Q Consensus 429 ~g~~g~~~~~~~~~~~~~~ 447 (464)
.|+.|.|+++++.++...+
T Consensus 374 ~g~~g~~~~~~~~~~~~~~ 392 (414)
T 3eiq_A 374 FGRKGVAINMVTEEDKRTL 392 (414)
T ss_dssp -----CEEEEECSTHHHHH
T ss_pred CCCCceEEEEEcHHHHHHH
Confidence 9999999999988765543
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2e-50 Score=391.42 Aligned_cols=352 Identities=24% Similarity=0.345 Sum_probs=286.6
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEE
Q 012434 27 CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 106 (464)
Q Consensus 27 ~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~li 106 (464)
.+|+.+ ++++.+.+.++++||..|+++|.++++.++.. .++++++.+|||+|||+++++++++.+.... .+.++||
T Consensus 25 ~~f~~~-~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-~~~~~li 100 (412)
T 3fht_A 25 KSFEEL-RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-KYPQCLC 100 (412)
T ss_dssp SCTGGG-TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTS-CSCCEEE
T ss_pred CCHhhC-CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcC-CCCCEEE
Confidence 345555 39999999999999999999999999998862 2489999999999999999999998876543 4558999
Q ss_pred EcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHH
Q 012434 107 VLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 185 (464)
Q Consensus 107 l~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~ 185 (464)
++|+++|+.|+.+.++++.... +..+....++...... ...+++|+|+||+++.+
T Consensus 101 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~ivv~T~~~l~~ 156 (412)
T 3fht_A 101 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGTPGTVLD 156 (412)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT------------------------CCCCCSEEEECHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh------------------------hcCCCCEEEECchHHHH
Confidence 9999999999999999987754 5777777777654322 12346999999999999
Q ss_pred hhhcCCCcCCCCccEEEEehhhHhhh-HhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCC
Q 012434 186 HINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (464)
Q Consensus 186 ~l~~~~~~~~~~~~~iIvDE~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
.+.....+.+.++++||+||||++.+ .++......+...+.
T Consensus 157 ~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~-------------------------------------- 198 (412)
T 3fht_A 157 WCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------------------- 198 (412)
T ss_dssp HHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC--------------------------------------
T ss_pred HHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC--------------------------------------
Confidence 98776667788999999999999876 455555665555443
Q ss_pred CceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhh
Q 012434 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344 (464)
Q Consensus 265 ~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~ 344 (464)
...+.+++|||++..........+.++..+...............+........+...+..++....++++||||+++..
T Consensus 199 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~ 278 (412)
T 3fht_A 199 RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKT 278 (412)
T ss_dssp TTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHH
T ss_pred CCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Confidence 23388999999988777777777777766655544333333223333333345677778888888888999999999999
Q ss_pred HHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCC------Ccch
Q 012434 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------YIKT 418 (464)
Q Consensus 345 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~------s~~~ 418 (464)
++.+++.|.+.+ +.+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. +...
T Consensus 279 ~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~ 355 (412)
T 3fht_A 279 ASWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNET 355 (412)
T ss_dssp HHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHH
T ss_pred HHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchhe
Confidence 999999999876 8899999999999999999999999999999999999999999999999999994 5679
Q ss_pred hhhhhhhhhcCCCCccEEEEeeCcccccc
Q 012434 419 YIHRAGRTARAGQLGRCFTLLHKDEKKGA 447 (464)
Q Consensus 419 ~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 447 (464)
|+||+||+||.|+.|.++++++..+....
T Consensus 356 ~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 384 (412)
T 3fht_A 356 YLHRIGRTGRFGKRGLAVNMVDSKHSMNI 384 (412)
T ss_dssp HHHHHTTSSCTTCCEEEEEEECSHHHHHH
T ss_pred eecccCcccCCCCCceEEEEEcChhhHHH
Confidence 99999999999999999999987654433
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.8e-50 Score=386.55 Aligned_cols=349 Identities=23% Similarity=0.340 Sum_probs=282.7
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
|+++ +|++.+.+.++++||..|+++|.++++.++.. .++++++.+|||+|||++++++++..+.... .+.++||++
T Consensus 7 f~~~-~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~ 82 (395)
T 3pey_A 7 FDEL-GLAPELLKGIYAMKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPED-ASPQAICLA 82 (395)
T ss_dssp STTS-CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTC-CSCCEEEEC
T ss_pred HhhC-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCC-CCccEEEEC
Confidence 4444 39999999999999999999999999998862 2389999999999999999999998776542 455899999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhh
Q 012434 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~ 188 (464)
|+++|+.|+++.+++++...++.+....++...... ..+++|+|+||+++.+.+.
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~iiv~T~~~l~~~~~ 137 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK-------------------------QINAQVIVGTPGTVLDLMR 137 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS-------------------------CBCCSEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc-------------------------cCCCCEEEEcHHHHHHHHH
Confidence 999999999999999988778888887776542211 2357999999999999887
Q ss_pred cCCCcCCCCccEEEEehhhHhhh-HhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCce
Q 012434 189 ATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (464)
Q Consensus 189 ~~~~~~~~~~~~iIvDE~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
... ..+.++++||+||||++.+ .++...+..+..... ...
T Consensus 138 ~~~-~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~ 178 (395)
T 3pey_A 138 RKL-MQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP--------------------------------------KDT 178 (395)
T ss_dssp TTC-BCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC--------------------------------------TTC
T ss_pred cCC-cccccCCEEEEEChhhhcCccccHHHHHHHHHhCC--------------------------------------CCc
Confidence 643 6688899999999999877 455555555555443 233
Q ss_pred eeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHH
Q 012434 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (464)
Q Consensus 268 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (464)
+.+++|||++.............+..+...............+........+...+..++....++++||||+++..++.
T Consensus 179 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 258 (395)
T 3pey_A 179 QLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANV 258 (395)
T ss_dssp EEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHH
Confidence 88999999977766666666666555544443322222222222233444566677777777788999999999999999
Q ss_pred HHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCC------Ccchhhh
Q 012434 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------YIKTYIH 421 (464)
Q Consensus 348 l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~------s~~~~~Q 421 (464)
+++.|++.+ +.+..+||+|+..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|. |+..|+|
T Consensus 259 l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Q 335 (395)
T 3pey_A 259 LYGKLKSEG---HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 335 (395)
T ss_dssp HHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHH
T ss_pred HHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhH
Confidence 999999876 8899999999999999999999999999999999999999999999999999998 9999999
Q ss_pred hhhhhhcCCCCccEEEEeeCcccccch
Q 012434 422 RAGRTARAGQLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 422 ~~GR~~R~g~~g~~~~~~~~~~~~~~~ 448 (464)
|+||+||.|+.|.++++++..+...++
T Consensus 336 r~GR~gR~g~~g~~~~~~~~~~~~~~~ 362 (395)
T 3pey_A 336 RIGRTGRFGRKGVAISFVHDKNSFNIL 362 (395)
T ss_dssp HHTTSSCTTCCEEEEEEECSHHHHHHH
T ss_pred hccccccCCCCceEEEEEechHHHHHH
Confidence 999999999999999999876655443
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.5e-49 Score=376.65 Aligned_cols=344 Identities=28% Similarity=0.465 Sum_probs=282.7
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
|+++ +|++.+.+.++++||..|+++|.++++.++. .++++++.+|||+|||++++++++..+... .+.++||++
T Consensus 8 f~~~-~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--~~~~~lil~ 81 (367)
T 1hv8_A 8 FNEL-NLSDNILNAIRNKGFEKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN--NGIEAIILT 81 (367)
T ss_dssp GGGS-SCCHHHHHHHHHHTCCSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS--SSCCEEEEC
T ss_pred hhhc-CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc--CCCcEEEEc
Confidence 3444 3999999999999999999999999998875 237999999999999999999888776543 355899999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhh
Q 012434 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~ 188 (464)
|+++|+.|+.+.+.++....++.+...+|+......... ..+++|+|+||+++.+.+.
T Consensus 82 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----------------------~~~~~iiv~T~~~l~~~~~ 139 (367)
T 1hv8_A 82 PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA----------------------LKNANIVVGTPGRILDHIN 139 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHH----------------------HHTCSEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhh----------------------cCCCCEEEecHHHHHHHHH
Confidence 999999999999999988778889999998876544222 1256999999999999887
Q ss_pred cCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCcee
Q 012434 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (464)
Q Consensus 189 ~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
... ..+.+++++|+||||++.+.++...+..++.... +..+
T Consensus 140 ~~~-~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~ 180 (367)
T 1hv8_A 140 RGT-LNLKNVKYFILDEADEMLNMGFIKDVEKILNACN--------------------------------------KDKR 180 (367)
T ss_dssp TTC-SCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC--------------------------------------SSCE
T ss_pred cCC-cccccCCEEEEeCchHhhhhchHHHHHHHHHhCC--------------------------------------CCce
Confidence 643 5678899999999999988887777777665543 2337
Q ss_pred eEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHH
Q 012434 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l 348 (464)
.+++|||++..........+.++....... ...+...........+...+..++. ..+.++||||++++.++.+
T Consensus 181 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l 254 (367)
T 1hv8_A 181 ILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKEL 254 (367)
T ss_dssp EEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHH
T ss_pred EEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHH
Confidence 899999997765555554455444433222 1233444455566667777777766 4567899999999999999
Q ss_pred HHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhc
Q 012434 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (464)
Q Consensus 349 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R 428 (464)
++.|++.+ +.+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|.|+..|+||+||+||
T Consensus 255 ~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R 331 (367)
T 1hv8_A 255 ASMLRDIG---FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR 331 (367)
T ss_dssp HHHHHHTT---CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCC
T ss_pred HHHHHhcC---CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhccccccc
Confidence 99999876 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeeCcccccch
Q 012434 429 AGQLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 429 ~g~~g~~~~~~~~~~~~~~~ 448 (464)
.|+.|.++++++..+...+.
T Consensus 332 ~g~~g~~~~~~~~~~~~~~~ 351 (367)
T 1hv8_A 332 AGKKGKAISIINRREYKKLR 351 (367)
T ss_dssp SSSCCEEEEEECTTSHHHHH
T ss_pred CCCccEEEEEEcHHHHHHHH
Confidence 99999999999887665443
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-50 Score=390.79 Aligned_cols=348 Identities=26% Similarity=0.445 Sum_probs=165.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
|+++ +|++.+.+.+.++||.+|+++|.++++.++. ++++++.+|||+|||++++++++..+... ..+.++||++
T Consensus 23 f~~~-~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~ 96 (394)
T 1fuu_A 23 FDDM-ELDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS-VKAPQALMLA 96 (394)
T ss_dssp SGGG-CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTT-CCSCCEEEEC
T ss_pred hhhc-CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhcc-CCCCCEEEEc
Confidence 3444 3999999999999999999999999998876 78999999999999999999999877654 2456899999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhh
Q 012434 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~ 188 (464)
|+++|+.|+.+.+.+++...++++..++|+.........+ .+++|+|+||+++.+.+.
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------------~~~~i~v~T~~~l~~~~~ 154 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL----------------------RDAQIVVGTPGRVFDNIQ 154 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH----------------------HHCSEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc----------------------CCCCEEEECHHHHHHHHH
Confidence 9999999999999999888889999999988765442221 246899999999999887
Q ss_pred cCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCcee
Q 012434 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (464)
Q Consensus 189 ~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
... +.+.+++++|+||||++.+.++...+..++..+.. ..+
T Consensus 155 ~~~-~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~ 195 (394)
T 1fuu_A 155 RRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP--------------------------------------TTQ 195 (394)
T ss_dssp TTS-SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT--------------------------------------TCE
T ss_pred hCC-cchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCC--------------------------------------Cce
Confidence 643 56788999999999999888888777777765542 237
Q ss_pred eEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceee-ccCCchHHHHHHHHHhhCCCeEEEEecChhhHHH
Q 012434 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (464)
.+++|||++..........+..+..+......... ..+...... .....+...+..++.....+++||||++++.++.
T Consensus 196 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~ 274 (394)
T 1fuu_A 196 VVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL-EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEE 274 (394)
T ss_dssp EEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------------------------------
T ss_pred EEEEEEecCHHHHHHHHHhcCCCeEEEecCccccC-CCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHH
Confidence 89999999876666666666666655444332222 222222222 2233366667777777677899999999999999
Q ss_pred HHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhh
Q 012434 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (464)
Q Consensus 348 l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~ 427 (464)
+++.|++.+ +.+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|.++..|+||+||+|
T Consensus 275 l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~ 351 (394)
T 1fuu_A 275 LTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGG 351 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcC---CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCccc
Confidence 999998765 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeeCcccccc
Q 012434 428 RAGQLGRCFTLLHKDEKKGA 447 (464)
Q Consensus 428 R~g~~g~~~~~~~~~~~~~~ 447 (464)
|.|+.|.|+++++.++...+
T Consensus 352 R~g~~g~~~~~~~~~~~~~~ 371 (394)
T 1fuu_A 352 RFGRKGVAINFVTNEDVGAM 371 (394)
T ss_dssp --------------------
T ss_pred CCCCCceEEEEEchhHHHHH
Confidence 99999999999988765543
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.9e-48 Score=388.80 Aligned_cols=359 Identities=29% Similarity=0.426 Sum_probs=279.7
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc---cCCccEEEEccc
Q 012434 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPT 110 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~---~~~~~~lil~P~ 110 (464)
.|++++.++++++||..|+++|.++++.++.. .++++++.+|||+|||++|++++++.+.... ..+.++|||+|+
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 104 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcch
Confidence 38999999999999999999999999988831 3789999999999999999999999887753 234589999999
Q ss_pred HHHHHHHHHHHHHhccc----cCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHh
Q 012434 111 RDLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (464)
Q Consensus 111 ~~L~~q~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~ 186 (464)
++|+.|+.+.++++... ....+..+.|+.........+ ...+++|+|+||++|.+.
T Consensus 105 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l--------------------~~~~~~IlV~Tp~~l~~~ 164 (579)
T 3sqw_A 105 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM--------------------NKLRPNIVIATPGRLIDV 164 (579)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH--------------------HHHCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHH--------------------hcCCCCEEEECHHHHHHH
Confidence 99999999999987632 246778888887665543322 134579999999999988
Q ss_pred hhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCc
Q 012434 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (464)
Q Consensus 187 l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
+.+.....+..+++||+||||++.+.+|...+..+...+..... .....
T Consensus 165 l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~-------------------------------~~~~~ 213 (579)
T 3sqw_A 165 LEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS-------------------------------KSADN 213 (579)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS-------------------------------SCTTC
T ss_pred HHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhc-------------------------------ccccC
Confidence 87643345778999999999999999988888888776543211 01124
Q ss_pred eeeEEeeeeeecCccchhcccccCCeeeecCCc---cccCccccccceeeccC-CchHH----HHHHHHHh-hCCCeEEE
Q 012434 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICES-KLKPL----YLVALLQS-LGEEKCIV 337 (464)
Q Consensus 267 ~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~----~l~~~l~~-~~~~~~lV 337 (464)
.+.+++|||++..........+..+..+..... .......+......... ..+.. .+...+.. ..+.++||
T Consensus 214 ~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 293 (579)
T 3sqw_A 214 IKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 293 (579)
T ss_dssp CEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 489999999988777777666666544332221 11222222222222222 22221 22222222 45679999
Q ss_pred EecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcc
Q 012434 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (464)
Q Consensus 338 f~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~ 417 (464)
||+++..++.+++.|++....++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++.
T Consensus 294 F~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~ 373 (579)
T 3sqw_A 294 FAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 373 (579)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTT
T ss_pred ECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHH
Confidence 99999999999999987633348899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012434 418 TYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 418 ~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
.|+||+||+||.|+.|.|++|++..+..
T Consensus 374 ~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 374 NYIHRIGRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred HhhhhccccccCCCCceEEEEEcccHHH
Confidence 9999999999999999999999877543
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.4e-50 Score=396.35 Aligned_cols=352 Identities=24% Similarity=0.351 Sum_probs=161.3
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE
Q 012434 28 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (464)
Q Consensus 28 ~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil 107 (464)
+|+.+ +|++.+.+.++++||..|+++|.++++.++.. .++++++.+|||+|||++|+++++..+.... .++++||+
T Consensus 93 ~f~~~-~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-~~~~~lil 168 (479)
T 3fmp_B 93 SFEEL-RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-KYPQCLCL 168 (479)
T ss_dssp CSGGG-TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-CSCCEEEE
T ss_pred CHHHc-CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhcC-CCCcEEEE
Confidence 45555 39999999999999999999999999988761 2489999999999999999999998776543 45589999
Q ss_pred cccHHHHHHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHh
Q 012434 108 LPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (464)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~ 186 (464)
+|+++|+.|+++.++.+.... ++.+....++...... ...+++|+|+||+++.+.
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~Ivv~Tp~~l~~~ 224 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGTPGTVLDW 224 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEECHHHHHHH
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc------------------------ccCCCCEEEECchHHHHH
Confidence 999999999999999887654 5677777776553322 123468999999999999
Q ss_pred hhcCCCcCCCCccEEEEehhhHhhh-HhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCC
Q 012434 187 INATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (464)
Q Consensus 187 l~~~~~~~~~~~~~iIvDE~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
+.+...+.+.++++||+||||++.+ .++......+...+. .
T Consensus 225 l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~--------------------------------------~ 266 (479)
T 3fmp_B 225 CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------------------------------------R 266 (479)
T ss_dssp HTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC--------------------------------------T
T ss_pred HHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC--------------------------------------c
Confidence 8776667788999999999999876 466666665555443 2
Q ss_pred ceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhH
Q 012434 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 345 (464)
Q Consensus 266 ~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~ 345 (464)
..+.+++|||++..........+.++..+.............+.+........+...+..++.....+++||||+++..+
T Consensus 267 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~ 346 (479)
T 3fmp_B 267 NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTA 346 (479)
T ss_dssp TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------------------------------------------
T ss_pred cceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHH
Confidence 33899999999887777777777777666555443333222222333333456666777777777778999999999999
Q ss_pred HHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC------CCcchh
Q 012434 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTY 419 (464)
Q Consensus 346 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~------~s~~~~ 419 (464)
+.+++.|.+.+ +.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.| .+...|
T Consensus 347 ~~l~~~L~~~~---~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~ 423 (479)
T 3fmp_B 347 SWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETY 423 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCC---ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHH
Confidence 99999998776 889999999999999999999999999999999999999999999999999999 466899
Q ss_pred hhhhhhhhcCCCCccEEEEeeCcccccch
Q 012434 420 IHRAGRTARAGQLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 420 ~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 448 (464)
+||+||+||.|+.|.+++|++..+...++
T Consensus 424 ~Qr~GRagR~g~~G~~i~~~~~~~~~~~~ 452 (479)
T 3fmp_B 424 LHRIGRTGRFGKRGLAVNMVDSKHSMNIL 452 (479)
T ss_dssp -----------------------------
T ss_pred HHHhcccccCCCCceEEEEEcCcchHHHH
Confidence 99999999999999999999877644443
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.6e-47 Score=385.01 Aligned_cols=359 Identities=29% Similarity=0.425 Sum_probs=278.3
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc---CCccEEEEccc
Q 012434 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPT 110 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~---~~~~~lil~P~ 110 (464)
.|++.+.+.++++||..|+++|.++++.++. ..++++++.+|||+|||++|++++++.+..... .+.++|||+|+
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Pt 155 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 155 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCc
Confidence 3899999999999999999999999998873 136899999999999999999999999887532 23589999999
Q ss_pred HHHHHHHHHHHHHhccc----cCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHh
Q 012434 111 RDLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (464)
Q Consensus 111 ~~L~~q~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~ 186 (464)
++|+.|+++.++++... .+..+..+.|+.........+ ...+++|+|+||+++.+.
T Consensus 156 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------~~~~~~Iiv~Tp~~l~~~ 215 (563)
T 3i5x_A 156 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM--------------------NKLRPNIVIATPGRLIDV 215 (563)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH--------------------HHHCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHH--------------------hcCCCCEEEECcHHHHHH
Confidence 99999999999987542 246678888887655443222 134679999999999988
Q ss_pred hhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCc
Q 012434 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (464)
Q Consensus 187 l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
+.+.....++.+++||+||||++.+.+|...+..+...+..... ...+.
T Consensus 216 l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~-------------------------------~~~~~ 264 (563)
T 3i5x_A 216 LEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS-------------------------------KSADN 264 (563)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS-------------------------------SCTTC
T ss_pred HHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccc-------------------------------cCccC
Confidence 87643345778999999999999999988888888776543211 01134
Q ss_pred eeeEEeeeeeecCccchhcccccCCeeeecCCc---cccCccccccceeeccC-CchHHH----HHHHHHh-hCCCeEEE
Q 012434 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICES-KLKPLY----LVALLQS-LGEEKCIV 337 (464)
Q Consensus 267 ~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~----l~~~l~~-~~~~~~lV 337 (464)
.+.+++|||++..........+..+..+..... .......+......... ..+... +...+.. ..+.++||
T Consensus 265 ~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 344 (563)
T 3i5x_A 265 IKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 344 (563)
T ss_dssp CEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 589999999987777766666665544332211 11122222222222222 222222 2222222 45779999
Q ss_pred EecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcc
Q 012434 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (464)
Q Consensus 338 f~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~ 417 (464)
||+++..++.+++.|++....++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++.
T Consensus 345 F~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~ 424 (563)
T 3i5x_A 345 FAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 424 (563)
T ss_dssp ECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTT
T ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchh
Confidence 99999999999999987633348899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012434 418 TYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 418 ~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
.|+||+||+||.|+.|.+++|+...+..
T Consensus 425 ~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 425 NYIHRIGRTARSGKEGSSVLFICKDELP 452 (563)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred hhhhhcCccccCCCCceEEEEEchhHHH
Confidence 9999999999999999999999877643
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2e-47 Score=360.14 Aligned_cols=321 Identities=28% Similarity=0.445 Sum_probs=261.5
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012434 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
|++.+.+.++++||..|+++|.++++.+.. ++++++.+|||+|||+++++++++. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHH
Confidence 589999999999999999999999998876 8899999999999999999888763 34799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcC
Q 012434 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~ 194 (464)
.|+.+.+++++...+..+..++|+......... ..+++|+|+||+++.+.+.... ..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~i~v~T~~~l~~~~~~~~-~~ 126 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR----------------------VRNADIVVATPGRLLDLWSKGV-ID 126 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH----------------------HTTCSEEEECHHHHHHHHHTTS-CC
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh----------------------cCCCCEEEECHHHHHHHHHcCC-cc
Confidence 999999999988888999999998776544322 1347999999999999877643 56
Q ss_pred CCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeee
Q 012434 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 274 (464)
+.++++||+||||++.+.++...+..++..... ..+.+++||
T Consensus 127 ~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~SA 168 (337)
T 2z0m_A 127 LSSFEIVIIDEADLMFEMGFIDDIKIILAQTSN--------------------------------------RKITGLFSA 168 (337)
T ss_dssp GGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTT--------------------------------------CSEEEEEES
T ss_pred hhhCcEEEEEChHHhhccccHHHHHHHHhhCCc--------------------------------------ccEEEEEeC
Confidence 788999999999999888887777777665432 226788999
Q ss_pred eeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhh
Q 012434 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (464)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~ 354 (464)
|++..........+.++..+.... ................ ......+....++++||||+++++++.+++.|+
T Consensus 169 T~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~- 241 (337)
T 2z0m_A 169 TIPEEIRKVVKDFITNYEEIEACI----GLANVEHKFVHVKDDW--RSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD- 241 (337)
T ss_dssp CCCHHHHHHHHHHSCSCEEEECSG----GGGGEEEEEEECSSSS--HHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-
T ss_pred cCCHHHHHHHHHhcCCceeeeccc----ccCCceEEEEEeChHH--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-
Confidence 997776655555555544432221 1112222222222222 223355666678899999999999999998885
Q ss_pred cCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCcc
Q 012434 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (464)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~ 434 (464)
.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|+..|+||+||+||.|+.|.
T Consensus 242 ------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~ 315 (337)
T 2z0m_A 242 ------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGE 315 (337)
T ss_dssp ------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEE
T ss_pred ------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCce
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEee
Q 012434 435 CFTLLH 440 (464)
Q Consensus 435 ~~~~~~ 440 (464)
+++|+.
T Consensus 316 ~~~~~~ 321 (337)
T 2z0m_A 316 AITFIL 321 (337)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 999998
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-47 Score=378.83 Aligned_cols=344 Identities=22% Similarity=0.320 Sum_probs=236.5
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012434 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
++++.+.+.+.+.||..|+++|.+++..++.. .++++++.+|||+|||++++++++..+..+. .+.++||++|+++|
T Consensus 125 ~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~-~~~~vLvl~P~~~L 201 (508)
T 3fho_A 125 XXXXXXXXXXXXXXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASV-PKPQAICLAPSREL 201 (508)
T ss_dssp --------------CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTC-CSCCEEEECSCHHH
T ss_pred ccccccccccccccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCC-CCceEEEEECcHHH
Confidence 47888999999999999999999999998862 2489999999999999999999998876653 35589999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCc
Q 012434 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (464)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~ 193 (464)
+.|+.+.+++++...++.+....++..... ...+++|+|+||+++.+.+.... +
T Consensus 202 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~Ivv~T~~~l~~~l~~~~-~ 255 (508)
T 3fho_A 202 ARQIMDVVTEMGKYTEVKTAFGIKDSVPKG-------------------------AKIDAQIVIGTPGTVMDLMKRRQ-L 255 (508)
T ss_dssp HHHHHHHHHHHSTTSSCCEEC-----------------------------------CCCCSEEEECHHHHHHHHHTTC-S
T ss_pred HHHHHHHHHHhCCccCeeEEEEeCCccccc-------------------------ccCCCCEEEECHHHHHHHHHcCC-c
Confidence 999999999998766666555555432211 12357999999999999887644 6
Q ss_pred CCCCccEEEEehhhHhhh-HhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEe
Q 012434 194 TLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (464)
Q Consensus 194 ~~~~~~~iIvDE~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (464)
.+.++++||+||||++.+ .++......+...+.. ..+.+++
T Consensus 256 ~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~i~l 297 (508)
T 3fho_A 256 DARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPR--------------------------------------NTQIVLF 297 (508)
T ss_dssp CCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCT--------------------------------------TCEEEEE
T ss_pred cccCCCEEEEechhhhcccCCcHHHHHHHHHhCCc--------------------------------------CCeEEEE
Confidence 678899999999999876 4566666666655532 3388999
Q ss_pred eeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHH
Q 012434 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (464)
Q Consensus 273 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l 352 (464)
|||++.............+..+...............+........+...+..++....++++||||+++.+++.+++.|
T Consensus 298 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 298 SATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp ESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred eCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 99997766666666666665554443332222222222333345556777777777778889999999999999999999
Q ss_pred hhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC------CCcchhhhhhhhh
Q 012434 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRT 426 (464)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~------~s~~~~~Q~~GR~ 426 (464)
.+.+ ..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.| .|+..|+||+||+
T Consensus 378 ~~~~---~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRa 454 (508)
T 3fho_A 378 TADG---HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRT 454 (508)
T ss_dssp TTTT---CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCC
T ss_pred HhCC---CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhc
Confidence 8766 889999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred hcCCCCccEEEEeeCcccccc
Q 012434 427 ARAGQLGRCFTLLHKDEKKGA 447 (464)
Q Consensus 427 ~R~g~~g~~~~~~~~~~~~~~ 447 (464)
||.|+.|.+++|++..+....
T Consensus 455 gR~g~~g~~i~l~~~~~~~~~ 475 (508)
T 3fho_A 455 GRFGRVGVSINFVHDKKSWEE 475 (508)
T ss_dssp C-----CEEEEEECTTTSSSS
T ss_pred CCCCCCcEEEEEEeChHHHHH
Confidence 999999999999986655443
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=8.2e-46 Score=368.98 Aligned_cols=335 Identities=20% Similarity=0.287 Sum_probs=254.0
Q ss_pred CCCCCCCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 30 DHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 30 ~~~~~l~~~i~~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
..++ +++.+.+.+++ +||..|+++|.++++.++. ++++++.+|||+|||++|+++++. ...++||++
T Consensus 24 ~~~~-l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~-------~~g~~lVis 91 (591)
T 2v1x_A 24 EDFP-WSGKVKDILQNVFKLEKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC-------SDGFTLVIC 91 (591)
T ss_dssp SCST-THHHHHHHHHHTSCCCSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT-------SSSEEEEEC
T ss_pred ccCC-CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH-------cCCcEEEEe
Confidence 3443 89999999998 7999999999999999886 899999999999999999999874 234899999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh---hcCCcEEEeCchHHHH
Q 012434 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL---QSAVDILVATPGRLMD 185 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IiI~T~~~l~~ 185 (464)
|+++|+.|+.+.+..+ |+++..+.|+........ .+..+ ..+.+|+|+||++|..
T Consensus 92 P~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~------------------~~~~l~~~~~~~~Ilv~Tpe~L~~ 149 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQL----GISATMLNASSSKEHVKW------------------VHAEMVNKNSELKLIYVTPEKIAK 149 (591)
T ss_dssp SCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHH------------------HHHHHHCTTCCCCEEEECHHHHHS
T ss_pred CHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHH------------------HHHHhhcccCCCCEEEEChhHhhc
Confidence 9999999999999987 788999999876554421 11222 3568999999998742
Q ss_pred ---hhhcC-CCcCCCCccEEEEehhhHhhhHh--hhhhHHH---HHHhccccccccccccccccccccccchhhhccccc
Q 012434 186 ---HINAT-RGFTLEHLCYLVVDETDRLLREA--YQAWLPT---VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (464)
Q Consensus 186 ---~l~~~-~~~~~~~~~~iIvDE~H~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
++... ....+.++++||+||||++..++ |...... +...
T Consensus 150 ~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~-------------------------------- 197 (591)
T 2v1x_A 150 SKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ-------------------------------- 197 (591)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH--------------------------------
T ss_pred cHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh--------------------------------
Confidence 22211 11346689999999999986544 3222211 1111
Q ss_pred cccCCCCCCceeeEEeeeeeecCccchhccc--ccCCeeeecCCccccCccccccceeeccCC---chHHHHHHHHHh-h
Q 012434 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLD--LHHPLFLTTGETRYKLPERLESYKLICESK---LKPLYLVALLQS-L 330 (464)
Q Consensus 257 ~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~-~ 330 (464)
.+..+.+++|||+++......... +..+..+........ + .+....... .+...+..++.. .
T Consensus 198 -------~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~n----l-~~~v~~~~~~~~~~~~~l~~~l~~~~ 265 (591)
T 2v1x_A 198 -------FPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPN----L-YYEVRQKPSNTEDFIEDIVKLINGRY 265 (591)
T ss_dssp -------CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTT----E-EEEEEECCSSHHHHHHHHHHHHTTTT
T ss_pred -------CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcc----c-EEEEEeCCCcHHHHHHHHHHHHHHhc
Confidence 133478999999976654433322 233333332221111 1 111111221 233445555543 3
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEe
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~ 410 (464)
.++++||||++++.++.+++.|++.+ +.+..+||+|+..+|..+++.|.+|+.+|||||+++++|+|+|++++||++
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g---~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~ 342 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLG---IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHH 342 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEES
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEe
Confidence 67899999999999999999999876 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012434 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 411 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
+.|.|+..|+|++||+||.|+.|.|+++++..+..
T Consensus 343 ~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~ 377 (591)
T 2v1x_A 343 SMSKSMENYYQESGRAGRDDMKADCILYYGFGDIF 377 (591)
T ss_dssp SCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred CCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHH
Confidence 99999999999999999999999999999876543
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=7.2e-46 Score=366.04 Aligned_cols=332 Identities=22% Similarity=0.308 Sum_probs=256.1
Q ss_pred CCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012434 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 35 l~~~i~~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
|++.+.+.+++ +||..|+++|.++++.++. ++++++.+|||+|||++|+++++.. ..++||++|+++|
T Consensus 9 L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~~-------~g~~lvi~P~~aL 77 (523)
T 1oyw_A 9 LESGAKQVLQETFGYQQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALLL-------NGLTVVVSPLISL 77 (523)
T ss_dssp HHHHHHHHHHHTTCCSSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHS-------SSEEEEECSCHHH
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHHh-------CCCEEEECChHHH
Confidence 89999999998 8999999999999998886 8999999999999999999988742 2379999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-hcCCcEEEeCchHHHHhhhcCCC
Q 012434 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRG 192 (464)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiI~T~~~l~~~l~~~~~ 192 (464)
+.|+.+.++.+ ++++..++++........ .+..+ ....+|+++||+++...... ..
T Consensus 78 ~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~------------------~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~ 134 (523)
T 1oyw_A 78 MKDQVDQLQAN----GVAAACLNSTQTREQQLE------------------VMTGCRTGQIRLLYIAPERLMLDNFL-EH 134 (523)
T ss_dssp HHHHHHHHHHT----TCCEEEECTTSCHHHHHH------------------HHHHHHHTCCSEEEECHHHHTSTTHH-HH
T ss_pred HHHHHHHHHHc----CCcEEEEeCCCCHHHHHH------------------HHHHHhcCCCCEEEECHHHHhChHHH-HH
Confidence 99999999876 788888888776544321 11222 34589999999998532111 01
Q ss_pred cCCCCccEEEEehhhHhhhHh--hhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeE
Q 012434 193 FTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (464)
Q Consensus 193 ~~~~~~~~iIvDE~H~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (464)
+...++++||+||||++.+++ |......+...... .+..+.+
T Consensus 135 l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~------------------------------------~~~~~~i 178 (523)
T 1oyw_A 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR------------------------------------FPTLPFM 178 (523)
T ss_dssp HTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH------------------------------------CTTSCEE
T ss_pred HhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh------------------------------------CCCCCEE
Confidence 234678999999999986544 22222211111000 0234789
Q ss_pred EeeeeeecCccchh--cccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHH
Q 012434 271 VLSATLTQDPNKLA--QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (464)
Q Consensus 271 ~~sat~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l 348 (464)
++|||+........ ...+.++.......... ...+.......+...+...+....++++||||++++.++.+
T Consensus 179 ~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~------~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l 252 (523)
T 1oyw_A 179 ALTATADDTTRQDIVRLLGLNDPLIQISSFDRP------NIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDT 252 (523)
T ss_dssp EEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT------TEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC------ceEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHH
Confidence 99999976543322 23344554443322211 11222333456677788888877788999999999999999
Q ss_pred HHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhc
Q 012434 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (464)
Q Consensus 349 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R 428 (464)
++.|++.+ +.+..+||+|+..+|.++++.|.+|+.+|||||+++++|+|+|++++||+++.|.|+..|+|++||+||
T Consensus 253 ~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR 329 (523)
T 1oyw_A 253 AARLQSKG---ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329 (523)
T ss_dssp HHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCT
T ss_pred HHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccC
Confidence 99999876 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeeCcccc
Q 012434 429 AGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 429 ~g~~g~~~~~~~~~~~~ 445 (464)
.|+.|.++++++..+..
T Consensus 330 ~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 330 DGLPAEAMLFYDPADMA 346 (523)
T ss_dssp TSSCEEEEEEECHHHHH
T ss_pred CCCCceEEEEeCHHHHH
Confidence 99999999999776643
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.1e-43 Score=343.71 Aligned_cols=332 Identities=18% Similarity=0.280 Sum_probs=241.9
Q ss_pred HHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 012434 37 PRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (464)
Q Consensus 37 ~~i~~~~~~-~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~ 115 (464)
+++.+.+++ +|| +|+++|.++++.++. ++++++.+|||+|||++++++++.... .+.++||++|+++|+.
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHH
Confidence 345566655 577 799999999988875 889999999999999988888777652 3458999999999999
Q ss_pred HHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcC-CcEEEeCchHHHHhhhcCCCcC
Q 012434 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFT 194 (464)
Q Consensus 116 q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IiI~T~~~l~~~l~~~~~~~ 194 (464)
|+++.++.++. .++++..++|+.+..... ..+..+..+ ++|+|+||+++.+.+.. +.
T Consensus 79 q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~------------------~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~ 136 (414)
T 3oiy_A 79 QTLERLQKLAD-EKVKIFGFYSSMKKEEKE------------------KFEKSFEEDDYHILVFSTQFVSKNREK---LS 136 (414)
T ss_dssp HHHHHHHHHCC-SSCCEEECCTTSCHHHHH------------------HHHHHHHHTCCSEEEEEHHHHHHCHHH---HT
T ss_pred HHHHHHHHHcc-CCceEEEEECCCChhhHH------------------HHHHHhhcCCCCEEEECHHHHHHHHHH---hc
Confidence 99999999988 789999999998764331 122334444 89999999999887765 55
Q ss_pred CCCccEEEEehhhHhhh-----------Hhhhhh-HHHHHHhccccccccccccccccccccccchhhhccccccccCCC
Q 012434 195 LEHLCYLVVDETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
+.++++||+||||++.. .++... +..++..++.... ... ..
T Consensus 137 ~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~-------------~~~--------------l~ 189 (414)
T 3oiy_A 137 QKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI-------------YER--------------PK 189 (414)
T ss_dssp TCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-------------CCC--------------CT
T ss_pred cccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchh-------------hhh--------------cc
Confidence 67899999999998764 233333 4455544431100 000 00
Q ss_pred CCCceeeEEeeee-eecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecC
Q 012434 263 PYPRLVKMVLSAT-LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341 (464)
Q Consensus 263 ~~~~~~~i~~sat-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s 341 (464)
..+..+.+++||| .+............. +.... .......+.+..... .+...+..++... ++++||||++
T Consensus 190 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~i~~~~~~~---~~~~~l~~~l~~~-~~~~lVF~~~ 261 (414)
T 3oiy_A 190 NLKPGILVVSSATAKPRGIRPLLFRDLLN---FTVGR-LVSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQT 261 (414)
T ss_dssp TCCCCEEEESSCCSSCCSSTTHHHHHHHS---CCSSC-CCCCCCSEEEEEESS---CCHHHHHHHHHHH-CSSEEEEESS
T ss_pred cCCCceEEEEecCCCcchhHHHHHHHhhc---cCcCc-cccccccchheeecc---CHHHHHHHHHHHc-CCCEEEEECC
Confidence 0134589999999 443333221111111 11111 111122223322222 4566667777663 5899999999
Q ss_pred hhhHHHHHHHHhhcCccceeEe-eccCcccHHHHHHHHHHHhcCCeeEEEE----cccccccCCCCC-CCeEEEecCC--
Q 012434 342 VESTHRLCTLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKP-- 413 (464)
Q Consensus 342 ~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~iLi~----t~~~~~Gidip~-~~~vi~~~~~-- 413 (464)
+..++.+++.|++.+ +.+. .+||. +|+ ++.|++|+.+|||| |+++++|+|+|+ +++||+++.|
T Consensus 262 ~~~~~~l~~~L~~~~---~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~ 332 (414)
T 3oiy_A 262 EEEGKELYEYLKRFK---FNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSG 332 (414)
T ss_dssp HHHHHHHHHHHHHTT---CCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTT
T ss_pred HHHHHHHHHHHHHcC---CceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCC
Confidence 999999999999876 7887 88985 344 99999999999999 999999999999 9999999999
Q ss_pred CCcchhhhhhhhhhcCC----CCccEEEEeeCcc
Q 012434 414 AYIKTYIHRAGRTARAG----QLGRCFTLLHKDE 443 (464)
Q Consensus 414 ~s~~~~~Q~~GR~~R~g----~~g~~~~~~~~~~ 443 (464)
.+...|+||+||+||.| +.|.+++++++..
T Consensus 333 ~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~ 366 (414)
T 3oiy_A 333 PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEE 366 (414)
T ss_dssp TCHHHHHHHHGGGCCEETTEECCEEEEEECCCHH
T ss_pred CCHHHHHHHhCccccCCCCCCcceEEEEEEccHH
Confidence 99999999999999987 5789999884433
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.6e-42 Score=357.24 Aligned_cols=341 Identities=21% Similarity=0.284 Sum_probs=253.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
|++++ |++.+.+.++++||.+|+++|.+++..+ +..++++++++|||+|||+++.+++++.+... +.+++|++
T Consensus 3 f~~l~-l~~~~~~~l~~~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~ 75 (720)
T 2zj8_A 3 VDELR-VDERIKSTLKERGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIV 75 (720)
T ss_dssp GGGCC-SCHHHHHHHHHTTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEEC
T ss_pred HhhcC-CCHHHHHHHHHCCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEc
Confidence 44553 9999999999999999999999997762 22489999999999999999999999887743 34899999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhh
Q 012434 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~ 188 (464)
|+++|+.|+++.++.+.. .|+++..++|+...... ...+++|+|+||+++...+.
T Consensus 76 P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~~~ 130 (720)
T 2zj8_A 76 PLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE------------------------WLGKYDIIIATAEKFDSLLR 130 (720)
T ss_dssp SSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG------------------------GGGGCSEEEECHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc------------------------ccCCCCEEEECHHHHHHHHH
Confidence 999999999999976544 48999999997653322 12356999999999988877
Q ss_pred cCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCcee
Q 012434 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (464)
Q Consensus 189 ~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
+.. ..++++++||+||+|++.+..++..+..++..+.. ..+
T Consensus 131 ~~~-~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~--------------------------------------~~~ 171 (720)
T 2zj8_A 131 HGS-SWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG--------------------------------------KAQ 171 (720)
T ss_dssp HTC-TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT--------------------------------------TBE
T ss_pred cCh-hhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc--------------------------------------CCe
Confidence 643 44788999999999999877777778877776642 228
Q ss_pred eEEeeeeeecCccchhcccccCCeeeecCCccccCccc--cccceeecc-----CCchHHHHHHHHHhhCCCeEEEEecC
Q 012434 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER--LESYKLICE-----SKLKPLYLVALLQSLGEEKCIVFTSS 341 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~lVf~~s 341 (464)
.+++|||+++. ...... +.... +............ ......... .......+.+.+. .++++||||++
T Consensus 172 ii~lSATl~n~-~~~~~~-l~~~~-~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s 246 (720)
T 2zj8_A 172 IIGLSATIGNP-EELAEW-LNAEL-IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNM 246 (720)
T ss_dssp EEEEECCCSCH-HHHHHH-TTEEE-EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSC
T ss_pred EEEEcCCcCCH-HHHHHH-hCCcc-cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecC
Confidence 99999998642 222221 11111 1100000000000 000000001 2333444444443 46899999999
Q ss_pred hhhHHHHHHHHhhcCcc------------------------------ceeEeeccCcccHHHHHHHHHHHhcCCeeEEEE
Q 012434 342 VESTHRLCTLLNHFGEL------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391 (464)
Q Consensus 342 ~~~~~~l~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~ 391 (464)
++.++.++..|.+.... ...+..+||+|+..+|..+++.|++|+.+||||
T Consensus 247 r~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlva 326 (720)
T 2zj8_A 247 RRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVA 326 (720)
T ss_dssp HHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 99999999998763110 124888999999999999999999999999999
Q ss_pred cccccccCCCCCCCeEEE----ec----CCCCcchhhhhhhhhhcCC--CCccEEEEeeCcccc
Q 012434 392 SDAMTRGMDVEGVNNVVN----YD----KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDEKK 445 (464)
Q Consensus 392 t~~~~~Gidip~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~ 445 (464)
|+++++|+|+|++++||. |+ .|.|..+|.||+||+||.| ..|.|++++...+..
T Consensus 327 T~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 327 TPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp CSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred CcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 999999999999999887 54 5788999999999999988 478899888877643
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.4e-42 Score=352.46 Aligned_cols=340 Identities=22% Similarity=0.298 Sum_probs=248.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEE
Q 012434 27 CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 106 (464)
Q Consensus 27 ~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~li 106 (464)
.+|++++ |++.+.+.++++||.+|+++|.+++..++ ..++++++++|||+|||+++.+++++.+... +.+++|
T Consensus 8 ~~~~~l~-l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~il~ 80 (715)
T 2va8_A 8 MPIEDLK-LPSNVIEIIKKRGIKKLNPPQTEAVKKGL---LEGNRLLLTSPTGSGKTLIAEMGIISFLLKN---GGKAIY 80 (715)
T ss_dssp CBGGGSS-SCHHHHHHHHTTSCCBCCHHHHHHHHTTT---TTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---CSEEEE
T ss_pred CcHHHcC-CCHHHHHHHHhCCCCCCCHHHHHHHHHHh---cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC---CCeEEE
Confidence 4455554 99999999999999999999999987632 3489999999999999999999999887643 358999
Q ss_pred EcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHh
Q 012434 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (464)
Q Consensus 107 l~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~ 186 (464)
++|+++|+.|+++.++.+. ..|+++...+|+...... ...+++|+|+||+++...
T Consensus 81 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~ 135 (715)
T 2va8_A 81 VTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA------------------------WLKNYDIIITTYEKLDSL 135 (715)
T ss_dssp ECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG------------------------GGGGCSEEEECHHHHHHH
T ss_pred EeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh------------------------hcCCCCEEEEcHHHHHHH
Confidence 9999999999999996553 358899999997654322 113569999999999998
Q ss_pred hhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCc
Q 012434 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (464)
Q Consensus 187 l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
+.+.. ..++++++||+||+|++.+..++..++.++..+. .
T Consensus 136 ~~~~~-~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~---------------------------------------~ 175 (715)
T 2va8_A 136 WRHRP-EWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK---------------------------------------R 175 (715)
T ss_dssp HHHCC-GGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH---------------------------------------T
T ss_pred HhCCh-hHhhccCEEEEechhhcCCcccchHHHHHHHhcc---------------------------------------c
Confidence 87643 4478899999999999876677777777766543 1
Q ss_pred eeeEEeeeeeecCccchhcccccCCeeeecCCccccCcccc----------cccee------eccCCchHHHHHHHHHhh
Q 012434 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL----------ESYKL------ICESKLKPLYLVALLQSL 330 (464)
Q Consensus 267 ~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~------~~~~~~~~~~l~~~l~~~ 330 (464)
.+.+++|||+++. ..+... +..+. +............+ ...+. ..........+...+ .
T Consensus 176 ~~ii~lSATl~n~-~~~~~~-l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 250 (715)
T 2va8_A 176 RNLLALSATISNY-KQIAKW-LGAEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--S 250 (715)
T ss_dssp SEEEEEESCCTTH-HHHHHH-HTCEE-EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--T
T ss_pred CcEEEEcCCCCCH-HHHHHH-hCCCc-cCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHH--h
Confidence 2889999998542 222221 11111 10000000000000 00000 000122223333333 2
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCcc---------------------------------ceeEeeccCcccHHHHHHH
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFGEL---------------------------------RIKIKEYSGLQRQSVRSKT 377 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~r~~~ 377 (464)
.++++||||++++.++.+++.|.+.... ...+..+||+|+..+|..+
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 5689999999999999999999864211 1248889999999999999
Q ss_pred HHHHhcCCeeEEEEcccccccCCCCCCCeEEE----ec-------CCCCcchhhhhhhhhhcCC--CCccEEEEeeCcc
Q 012434 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD-------KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDE 443 (464)
Q Consensus 378 ~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~----~~-------~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~ 443 (464)
++.|++|+.+|||||+++++|+|+|++++||. |+ .|.|..+|.||+||+||.| ..|.|+.++...+
T Consensus 331 ~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 331 EEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999999999999999999999998 77 7889999999999999987 4788998887765
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.6e-42 Score=356.17 Aligned_cols=338 Identities=23% Similarity=0.301 Sum_probs=248.3
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012434 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
|++.+.+.++++||.+|+++|.++++.+.. ++++++++|||+|||+++.+++++.+.. +.+++|++|+++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La 81 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALA 81 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHH
Confidence 789999999999999999999999888654 8999999999999999999999988764 34899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcC
Q 012434 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~ 194 (464)
.|+++.++.+. ..|+++...+|+...... ...+++|+|+||+++...+.+.. ..
T Consensus 82 ~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~l~~~~-~~ 135 (702)
T 2p6r_A 82 GEKYESFKKWE-KIGLRIGISTGDYESRDE------------------------HLGDCDIIVTTSEKADSLIRNRA-SW 135 (702)
T ss_dssp HHHHHHHTTTT-TTTCCEEEECSSCBCCSS------------------------CSTTCSEEEEEHHHHHHHHHTTC-SG
T ss_pred HHHHHHHHHHH-hcCCEEEEEeCCCCcchh------------------------hccCCCEEEECHHHHHHHHHcCh-hH
Confidence 99999996554 348899999997653321 12357999999999999887643 44
Q ss_pred CCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeee
Q 012434 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 274 (464)
++++++||+||+|++.+..++..+..++..+.... +..+.+++||
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~-----------------------------------~~~~ii~lSA 180 (702)
T 2p6r_A 136 IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-----------------------------------KALRVIGLSA 180 (702)
T ss_dssp GGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC-----------------------------------TTCEEEEEEC
T ss_pred HhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC-----------------------------------cCceEEEECC
Confidence 78899999999999887777777777666543110 2348999999
Q ss_pred eeecCccchhcccccCCeeeecCCccccCcccc--ccceeeccC-------CchHHHHHHHHHhhCCCeEEEEecChhhH
Q 012434 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLICES-------KLKPLYLVALLQSLGEEKCIVFTSSVEST 345 (464)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~lVf~~s~~~~ 345 (464)
|+++ ....... +..+. +............. ......... ......+...+. .++++||||++++.+
T Consensus 181 Tl~n-~~~~~~~-l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~ 255 (702)
T 2p6r_A 181 TAPN-VTEIAEW-LDADY-YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGA 255 (702)
T ss_dssp CCTT-HHHHHHH-TTCEE-EECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHH
T ss_pred CcCC-HHHHHHH-hCCCc-ccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHH
Confidence 9864 2222221 22111 11111100000000 000000000 013333444332 578999999999999
Q ss_pred HHHHHHHhhcCc---------------------------cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccccccc
Q 012434 346 HRLCTLLNHFGE---------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398 (464)
Q Consensus 346 ~~l~~~l~~~~~---------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~G 398 (464)
+.+++.|.+... ....+..+||+|+..+|..+++.|++|+.+|||||+++++|
T Consensus 256 ~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~G 335 (702)
T 2p6r_A 256 EKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAG 335 (702)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSS
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhcc
Confidence 999999875310 01357889999999999999999999999999999999999
Q ss_pred CCCCCCCeEEE----ec---CCCCcchhhhhhhhhhcCC--CCccEEEEeeCccccc
Q 012434 399 MDVEGVNNVVN----YD---KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDEKKG 446 (464)
Q Consensus 399 idip~~~~vi~----~~---~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~ 446 (464)
+|+|++++||. |+ .|.|..+|.||+||+||.| ..|.|+.++...+...
T Consensus 336 idip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 336 VNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp SCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred CCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 99999999988 54 6889999999999999988 4788999988776443
No 22
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.5e-41 Score=334.03 Aligned_cols=334 Identities=25% Similarity=0.310 Sum_probs=243.6
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.|+++|.+++..++. + ++++.+|||+|||++++.+++..+.. .+.++||++|+++|+.||.+++.+++...+
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 699999999988876 4 99999999999999999988877762 355899999999999999999999875444
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh
Q 012434 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~ 209 (464)
.++..++|+........ ...+++|+|+||+.+.+.+.... +.+.++++||+||||++
T Consensus 81 ~~v~~~~g~~~~~~~~~----------------------~~~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDEaH~~ 137 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK----------------------AWARAKVIVATPQTIENDLLAGR-ISLEDVSLIVFDEAHRA 137 (494)
T ss_dssp GGEEEECSCSCHHHHHH----------------------HHHHCSEEEECHHHHHHHHHTTS-CCTTSCSEEEEETGGGC
T ss_pred hheEEeeCCcchhhhhh----------------------hccCCCEEEecHHHHHHHHhcCC-cchhhceEEEEECCccc
Confidence 58888998876544311 22346999999999999877643 56788999999999998
Q ss_pred hhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcc--c
Q 012434 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL--D 287 (464)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~--~ 287 (464)
.+......+...+.... +..+.+++|||+.......... .
T Consensus 138 ~~~~~~~~~~~~~~~~~--------------------------------------~~~~~l~lTaTp~~~~~~~~~l~~~ 179 (494)
T 1wp9_A 138 VGNYAYVFIAREYKRQA--------------------------------------KNPLVIGLTASPGSTPEKIMEVINN 179 (494)
T ss_dssp STTCHHHHHHHHHHHHC--------------------------------------SSCCEEEEESCSCSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhcC--------------------------------------CCCeEEEEecCCCCCcHHHHHHHHh
Confidence 75433333332222211 2237889999987432221110 0
Q ss_pred cc--CCeeeecCCc--------------cccCcccc--------------------------------------------
Q 012434 288 LH--HPLFLTTGET--------------RYKLPERL-------------------------------------------- 307 (464)
Q Consensus 288 ~~--~~~~~~~~~~--------------~~~~~~~~-------------------------------------------- 307 (464)
+. .+........ ....+...
T Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (494)
T 1wp9_A 180 LGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIIN 259 (494)
T ss_dssp TTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHH
T ss_pred cChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHH
Confidence 00 0000000000 00000000
Q ss_pred --------------------------------------ccc-----------------------------------eeec
Q 012434 308 --------------------------------------ESY-----------------------------------KLIC 314 (464)
Q Consensus 308 --------------------------------------~~~-----------------------------------~~~~ 314 (464)
..+ ....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (494)
T 1wp9_A 260 EEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIG 339 (494)
T ss_dssp HHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence 000 0000
Q ss_pred cCCchHHHHHHHHHh----hCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccC--------cccHHHHHHHHHHHh
Q 012434 315 ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG--------LQRQSVRSKTLKAFR 382 (464)
Q Consensus 315 ~~~~~~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~--------~~~~~~r~~~~~~f~ 382 (464)
....|...+.+++.. ..+.++||||+++..++.+++.|++.+ +.+..+|| +|+..+|.++++.|+
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 416 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG---IKAKRFVGQASKENDRGLSQREQKLILDEFA 416 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT---CCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcC---CCcEEEeccccccccccCCHHHHHHHHHHHh
Confidence 334466667777766 468899999999999999999999876 88999999 999999999999999
Q ss_pred cCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccccchhhcccccc
Q 012434 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAIGRSLFHQS 456 (464)
Q Consensus 383 ~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (464)
+|+.+|||+|+++++|+|+|++++||++++|+|+..|+||+||+||.|+ |.++.++..++.++.+........
T Consensus 417 ~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee~~~~~~~~k~ 489 (494)
T 1wp9_A 417 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEAYYWSSRQKE 489 (494)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHHHHHHHCC---
T ss_pred cCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997 999999999988877755544433
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.1e-42 Score=344.31 Aligned_cols=339 Identities=19% Similarity=0.207 Sum_probs=198.5
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc-CCccEEEEcccHHHHHHHHHHHHHhc
Q 012434 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 47 ~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
+..+|+++|.++++.++. ++++++.+|||+|||+++++++++.+..... .+.++||++|+++|+.|+.+.+++++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 445899999999998876 7899999999999999999999988876431 15689999999999999999999999
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEeh
Q 012434 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE 205 (464)
...++++..++|+....... ..+..+++|+|+||+++.+.+.......+.++++||+||
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 138 (556)
T 4a2p_A 80 ERQGYSVQGISGENFSNVSV---------------------EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 138 (556)
T ss_dssp GGGTCCEEECCCC-----CH---------------------HHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEET
T ss_pred cccCceEEEEeCCCCcchhH---------------------HHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEEC
Confidence 88899999999987544332 223345799999999999988875533688999999999
Q ss_pred hhHhhhHhhhhhH-HHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCcc-ch
Q 012434 206 TDRLLREAYQAWL-PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-KL 283 (464)
Q Consensus 206 ~H~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~-~~ 283 (464)
||++.+.+....+ ..++...... ..+..+.+++|||+..... ..
T Consensus 139 ah~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~l~lSAT~~~~~~~~~ 184 (556)
T 4a2p_A 139 CHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAKNI 184 (556)
T ss_dssp GGGCSTTSHHHHHHHHHHHHHHCC-------------------------------------CCEEEEEESCCCCTTCSSH
T ss_pred CcccCCcchHHHHHHHHHHhhhcc----------------------------------cCCCCeEEEEeCCcccCchhhH
Confidence 9999766543222 1222211100 0133488999999853210 00
Q ss_pred h----------c------------------ccccCCeeeecCCccccCcccc-----------cc---------------
Q 012434 284 A----------Q------------------LDLHHPLFLTTGETRYKLPERL-----------ES--------------- 309 (464)
Q Consensus 284 ~----------~------------------~~~~~~~~~~~~~~~~~~~~~~-----------~~--------------- 309 (464)
. . .+...+......... ...... ..
T Consensus 185 ~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (556)
T 4a2p_A 185 EETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-RIHNPFAAIISNLMSETEALMRTIYSVDTLSQNS 263 (556)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC-CSCCHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC-CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 0 0 000111100000000 000000 00
Q ss_pred -----------c--------------------------------------------------------------------
Q 012434 310 -----------Y-------------------------------------------------------------------- 310 (464)
Q Consensus 310 -----------~-------------------------------------------------------------------- 310 (464)
+
T Consensus 264 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 343 (556)
T 4a2p_A 264 KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT 343 (556)
T ss_dssp -CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC
T ss_pred ccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 0
Q ss_pred ---------------------eeeccCCchHHHHHHHHHh----hCCCeEEEEecChhhHHHHHHHHhhcCc--------
Q 012434 311 ---------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE-------- 357 (464)
Q Consensus 311 ---------------------~~~~~~~~~~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~l~~~~~-------- 357 (464)
........|...+..++.. ..+.++||||+++..++.+++.|++...
T Consensus 344 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~ 423 (556)
T 4a2p_A 344 ELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGV 423 (556)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC
T ss_pred HHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeE
Confidence 0000124455566666654 4578999999999999999999987510
Q ss_pred -cceeEeeccCcccHHHHHHHHHHHhc-CCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccE
Q 012434 358 -LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (464)
Q Consensus 358 -~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 435 (464)
.+.....+||+|+..+|.+++++|++ |+.+|||||+++++|+|+|++++||++++|+|+..|+||+|| ||. +.|.+
T Consensus 424 ~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~ 501 (556)
T 4a2p_A 424 LMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKC 501 (556)
T ss_dssp ------------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCE
T ss_pred EEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceE
Confidence 12445566888999999999999999 999999999999999999999999999999999999999999 999 89999
Q ss_pred EEEeeCcccccc
Q 012434 436 FTLLHKDEKKGA 447 (464)
Q Consensus 436 ~~~~~~~~~~~~ 447 (464)
++++...+..+.
T Consensus 502 ~~l~~~~~~~~~ 513 (556)
T 4a2p_A 502 ILVTSKTEVVEN 513 (556)
T ss_dssp EEEESCHHHHHH
T ss_pred EEEEeCcchHHH
Confidence 999988776543
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.4e-41 Score=350.53 Aligned_cols=345 Identities=17% Similarity=0.157 Sum_probs=210.6
Q ss_pred HHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc-CCccEEEEcccHHHHHHHH
Q 012434 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVK 118 (464)
Q Consensus 40 ~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~-~~~~~lil~P~~~L~~q~~ 118 (464)
...++.+||..|+++|.++++.++. ++++++++|||+|||+++++++++.+..... .+.++||++|+++|+.|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHH
Confidence 3456788999999999999998876 8999999999999999999999988776421 2258999999999999999
Q ss_pred HHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCc
Q 012434 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 198 (464)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~ 198 (464)
+.+++++...++++..++|+....... ..+..+++|+|+||++|.+.+.......+.++
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~---------------------~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPV---------------------EQIVENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCH---------------------HHHHHTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred HHHHHHhccCCceEEEEeCCccccccH---------------------HHhccCCCEEEECHHHHHHHHhcCcccccccc
Confidence 999999887789999999987543321 12334679999999999998887543367889
Q ss_pred cEEEEehhhHhhhHhhhh-hHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeee
Q 012434 199 CYLVVDETDRLLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277 (464)
Q Consensus 199 ~~iIvDE~H~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~ 277 (464)
++||+||||++.+..... ....++..... ....+..+.+++|||+.
T Consensus 138 ~~vViDEaH~~~~~~~~~~i~~~~l~~~~~---------------------------------~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 138 TLMIFDECHNTSKQHPYNMIMFNYLDQKLG---------------------------------GSSGPLPQVIGLTASVG 184 (696)
T ss_dssp SEEEEETGGGCSTTCHHHHHHHHHHHHHHT---------------------------------TCCSCCCEEEEEESCCC
T ss_pred cEEEEeCCCcccCcccHHHHHHHHHHHhhc---------------------------------ccCCCCCeEEEEeCccc
Confidence 999999999986443221 11112211100 00012337778888875
Q ss_pred cCcc--------chhcc---------------------cccCCeeeec--CCccc-------------------------
Q 012434 278 QDPN--------KLAQL---------------------DLHHPLFLTT--GETRY------------------------- 301 (464)
Q Consensus 278 ~~~~--------~~~~~---------------------~~~~~~~~~~--~~~~~------------------------- 301 (464)
.... ..... ....|..... .....
T Consensus 185 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~ 264 (696)
T 2ykg_A 185 VGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDL 264 (696)
T ss_dssp CSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTG
T ss_pred cCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2100 00000 0000000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 012434 302 -------------------------------------------------------------------------------- 301 (464)
Q Consensus 302 -------------------------------------------------------------------------------- 301 (464)
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 344 (696)
T 2ykg_A 265 ENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN 344 (696)
T ss_dssp GGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHH
Confidence
Q ss_pred ---cCcccccccee-------------e---ccCCchHHHHHHHHHhh----CCCeEEEEecChhhHHHHHHHHhhcCc-
Q 012434 302 ---KLPERLESYKL-------------I---CESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGE- 357 (464)
Q Consensus 302 ---~~~~~~~~~~~-------------~---~~~~~~~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~l~~~~~- 357 (464)
.....+..... . .....+...+..++... .++++||||+++..++.+++.|++.+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~ 424 (696)
T 2ykg_A 345 VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL 424 (696)
T ss_dssp HHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTC
T ss_pred HhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCc
Confidence 00000000000 0 01345666777777665 567999999999999999999988642
Q ss_pred cceeEeec--------cCcccHHHHHHHHHHHhc-CCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhc
Q 012434 358 LRIKIKEY--------SGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (464)
Q Consensus 358 ~~~~~~~~--------~~~~~~~~r~~~~~~f~~-~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R 428 (464)
..+.+..+ |++|+..+|.++++.|++ |+.+|||||+++++|+|+|++++||++++|.|+..|+||+|| ||
T Consensus 425 ~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR 503 (696)
T 2ykg_A 425 SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 503 (696)
T ss_dssp CSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC---------
T ss_pred cccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-Cc
Confidence 12456666 669999999999999998 999999999999999999999999999999999999999999 99
Q ss_pred CCCCccEEEEeeCccc
Q 012434 429 AGQLGRCFTLLHKDEK 444 (464)
Q Consensus 429 ~g~~g~~~~~~~~~~~ 444 (464)
. +.|.++.++...+.
T Consensus 504 ~-~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 504 A-RGSKCFLLTSNAGV 518 (696)
T ss_dssp --CCCEEEEEESCHHH
T ss_pred C-CCceEEEEecCCCH
Confidence 8 78999999987665
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5.9e-41 Score=337.59 Aligned_cols=337 Identities=18% Similarity=0.194 Sum_probs=222.7
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc-cCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
+|+++|.++++.++. ++++++.+|||+|||+++++++++.+.... ..+.++||++|+++|+.|+.+.+.+++...
T Consensus 4 ~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 799999999998875 899999999999999999999998887642 125689999999999999999999999888
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012434 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
++++..++|+....... ..+..+++|+|+||+++.+.+.......+.++++||+||||+
T Consensus 80 ~~~~~~~~g~~~~~~~~---------------------~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~ 138 (555)
T 3tbk_A 80 GYNIASISGATSDSVSV---------------------QHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN 138 (555)
T ss_dssp TCCEEEECTTTGGGSCH---------------------HHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG
T ss_pred CcEEEEEcCCCcchhhH---------------------HHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc
Confidence 89999999998644332 223345799999999999988875533678899999999999
Q ss_pred hhhHhhh-hhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccc-----
Q 012434 209 LLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK----- 282 (464)
Q Consensus 209 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~----- 282 (464)
+.+.+.. ..+..++...... ...+..+.+++|||+......
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~lSAT~~~~~~~~~~~~ 185 (555)
T 3tbk_A 139 TSKNHPYNQIMFRYLDHKLGE---------------------------------SRDPLPQVVGLTASVGVGDAKTAEEA 185 (555)
T ss_dssp CSTTCHHHHHHHHHHHHHTSS---------------------------------CCSCCCEEEEEESCCCCTTCCSHHHH
T ss_pred cCCcchHHHHHHHHHHhhhcc---------------------------------ccCCCCeEEEEecCcccCccccHHHH
Confidence 9765422 2222222221110 001334889999998543200
Q ss_pred ---hh---c------------------ccccCCeeeecCCccccCccc--------------------------------
Q 012434 283 ---LA---Q------------------LDLHHPLFLTTGETRYKLPER-------------------------------- 306 (464)
Q Consensus 283 ---~~---~------------------~~~~~~~~~~~~~~~~~~~~~-------------------------------- 306 (464)
.. . .+...+......... .....
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 264 (555)
T 3tbk_A 186 MQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVAS-RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNR 264 (555)
T ss_dssp HHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCC-CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSC
T ss_pred HHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecC-cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 00 0 000011000000000 00000
Q ss_pred ---c-------c------------------------------------------------------cc------------
Q 012434 307 ---L-------E------------------------------------------------------SY------------ 310 (464)
Q Consensus 307 ---~-------~------------------------------------------------------~~------------ 310 (464)
. . .+
T Consensus 265 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (555)
T 3tbk_A 265 EFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDET 344 (555)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----H
T ss_pred cccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchH
Confidence 0 0 00
Q ss_pred -------------------eeeccCCchHHHHHHHHHh----hCCCeEEEEecChhhHHHHHHHHhhcCc---------c
Q 012434 311 -------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE---------L 358 (464)
Q Consensus 311 -------------------~~~~~~~~~~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~l~~~~~---------~ 358 (464)
........|...+.+++.. ..+.++||||+++..++.+++.|++.+. .
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 424 (555)
T 3tbk_A 345 ERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILT 424 (555)
T ss_dssp HHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECC
T ss_pred HHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEE
Confidence 0000123455566666654 3568999999999999999999987531 1
Q ss_pred ceeEeeccCcccHHHHHHHHHHHhc-CCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEE
Q 012434 359 RIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437 (464)
Q Consensus 359 ~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~ 437 (464)
+.....+||+|+..+|.++++.|++ |+.+|||||+++++|+|+|++++||++++|+|+..|+||+|| ||. +.|.+++
T Consensus 425 g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~ 502 (555)
T 3tbk_A 425 GRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFL 502 (555)
T ss_dssp C--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEE
T ss_pred ecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEE
Confidence 1234456679999999999999999 999999999999999999999999999999999999999999 998 8999999
Q ss_pred EeeCcccccc
Q 012434 438 LLHKDEKKGA 447 (464)
Q Consensus 438 ~~~~~~~~~~ 447 (464)
|++..+....
T Consensus 503 l~~~~~~~~~ 512 (555)
T 3tbk_A 503 LTSSADVIEK 512 (555)
T ss_dssp EESCHHHHHH
T ss_pred EEcCCCHHHH
Confidence 9988766543
No 26
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-41 Score=355.76 Aligned_cols=335 Identities=18% Similarity=0.174 Sum_probs=241.7
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012434 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
+++.+...+...++-.|+++|.+++..+.. ++++++++|||+|||+++.++++..+.. +.+++|++|+++|+
T Consensus 169 l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~----g~dvLV~ApTGSGKTlva~l~i~~~l~~----g~rvlvl~PtraLa 240 (1108)
T 3l9o_A 169 IAEHKRVNEARTYPFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALS 240 (1108)
T ss_dssp TTTTCCCSCSSCCSSCCCHHHHHHHHHHTT----TCCEEEECCSSSHHHHHHHHHHHHHHHT----TCEEEEEESSHHHH
T ss_pred CChhhhHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEcCcHHHH
Confidence 445554455555555899999999888754 8999999999999999999999988754 34899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcC
Q 012434 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~ 194 (464)
.|+++.+...+. .++.++|+... ..+++|+|+||++|.+.+.+.. ..
T Consensus 241 ~Q~~~~l~~~~~----~VglltGd~~~----------------------------~~~~~IlV~Tpe~L~~~L~~~~-~~ 287 (1108)
T 3l9o_A 241 NQKYRELLAEFG----DVGLMTGDITI----------------------------NPDAGCLVMTTEILRSMLYRGS-EV 287 (1108)
T ss_dssp HHHHHHHHHHTS----SEEEECSSCBC----------------------------CCSCSEEEEEHHHHHHHHHHCS-SH
T ss_pred HHHHHHHHHHhC----CccEEeCcccc----------------------------CCCCCEEEeChHHHHHHHHcCc-cc
Confidence 999999999865 57778887652 2346999999999999887754 45
Q ss_pred CCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeee
Q 012434 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 274 (464)
+.++++||+||||++.+.+++..+..++..++. ..+.+++||
T Consensus 288 l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~--------------------------------------~~qvl~lSA 329 (1108)
T 3l9o_A 288 MREVAWVIFDEVHYMRDKERGVVWEETIILLPD--------------------------------------KVRYVFLSA 329 (1108)
T ss_dssp HHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCT--------------------------------------TSEEEEEEC
T ss_pred cccCCEEEEhhhhhccccchHHHHHHHHHhcCC--------------------------------------CceEEEEcC
Confidence 778999999999999999999888888876642 348899999
Q ss_pred eeecCccc--hhcccccCCeeeec-CCccccCcc-----ccccceeecc-------------------------------
Q 012434 275 TLTQDPNK--LAQLDLHHPLFLTT-GETRYKLPE-----RLESYKLICE------------------------------- 315 (464)
Q Consensus 275 t~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~------------------------------- 315 (464)
|++..... +.......+..+.. ......... ..........
T Consensus 330 Tipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 409 (1108)
T 3l9o_A 330 TIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSR 409 (1108)
T ss_dssp SCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--------------
T ss_pred CCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccc
Confidence 97655332 21112222221111 111000000 0000000000
Q ss_pred ---------------CCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCcc----------------------
Q 012434 316 ---------------SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL---------------------- 358 (464)
Q Consensus 316 ---------------~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~---------------------- 358 (464)
...+...+...+.....+++||||+++..|+.++..|...+..
T Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~ 489 (1108)
T 3l9o_A 410 GKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPET 489 (1108)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchh
Confidence 0112223444444556679999999999999999998753211
Q ss_pred --------------ceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCC--------CCc
Q 012434 359 --------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--------AYI 416 (464)
Q Consensus 359 --------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~--------~s~ 416 (464)
...+..+||+|+..+|..+++.|.+|..+|||||+++++|+|+|++++||.+..+ .|+
T Consensus 490 d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~ 569 (1108)
T 3l9o_A 490 DRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 569 (1108)
T ss_dssp TTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCH
T ss_pred hhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCH
Confidence 0127889999999999999999999999999999999999999999999976543 366
Q ss_pred chhhhhhhhhhcCC--CCccEEEEeeCcccccch
Q 012434 417 KTYIHRAGRTARAG--QLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 417 ~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~ 448 (464)
..|+||+||+||.| ..|.|+++++.......+
T Consensus 570 ~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~ 603 (1108)
T 3l9o_A 570 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVA 603 (1108)
T ss_dssp HHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHH
T ss_pred HHHHHhhcccCCCCCCCceEEEEEecCCcCHHHH
Confidence 67999999999999 577888777666444444
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1e-40 Score=346.88 Aligned_cols=342 Identities=18% Similarity=0.190 Sum_probs=205.1
Q ss_pred HHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc-cCCccEEEEcccHHHHHHHHHHHH
Q 012434 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFA 122 (464)
Q Consensus 44 ~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~ 122 (464)
..+|+..|+++|.++++.++. ++++++++|||+|||++++++++..+.... ..+.++||++|+++|+.|+.+.++
T Consensus 242 ~~~g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 242 PVYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp ------CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred hhcCCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 346788999999999998876 799999999999999999999998887642 115689999999999999999999
Q ss_pred HhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEE
Q 012434 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (464)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iI 202 (464)
+++...++++..++|+....... ..+..+++|+|+||+++.+.+.......+.++++||
T Consensus 318 ~~~~~~~~~v~~~~g~~~~~~~~---------------------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 376 (797)
T 4a2q_A 318 HHFERQGYSVQGISGENFSNVSV---------------------EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMI 376 (797)
T ss_dssp HHHGGGTCCEEEECCC-----CH---------------------HHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEE
T ss_pred HhcccCCceEEEEeCCcchhhhH---------------------HHhhCCCCEEEEchHHHHHHHHhccccccccCCEEE
Confidence 99988899999999987544332 223456799999999999988865533688899999
Q ss_pred EehhhHhhhHhhhhh-HHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCc-
Q 012434 203 VDETDRLLREAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP- 280 (464)
Q Consensus 203 vDE~H~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~- 280 (464)
+||||++...+.... +..+....... ..+..+.+++|||+....
T Consensus 377 iDEaH~~~~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~l~lSATp~~~~~ 422 (797)
T 4a2q_A 377 FDECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNA 422 (797)
T ss_dssp ETTGGGCSTTSHHHHHHHHHHHHHHTT----------------------------------CCCCCEEEEEESCCCCTTC
T ss_pred EECccccCCCccHHHHHHHHHHHhhcc----------------------------------CCCCCeEEEEcCCcccccc
Confidence 999999876543222 22222211100 113448899999985321
Q ss_pred -------cchh---------------------cccccCCeee--ecCCccc-c---------------------------
Q 012434 281 -------NKLA---------------------QLDLHHPLFL--TTGETRY-K--------------------------- 302 (464)
Q Consensus 281 -------~~~~---------------------~~~~~~~~~~--~~~~~~~-~--------------------------- 302 (464)
.... ...+..+... ....... .
T Consensus 423 ~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~ 502 (797)
T 4a2q_A 423 KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQ 502 (797)
T ss_dssp CSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Confidence 0000 0000111100 0000000 0
Q ss_pred Cc----cc------c-----------------------------c-------------------------cc--------
Q 012434 303 LP----ER------L-----------------------------E-------------------------SY-------- 310 (464)
Q Consensus 303 ~~----~~------~-----------------------------~-------------------------~~-------- 310 (464)
.+ .. . . .+
T Consensus 503 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 582 (797)
T 4a2q_A 503 NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGP 582 (797)
T ss_dssp ----CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred hccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccC
Confidence 00 00 0 0 00
Q ss_pred -----------------------eeeccCCchHHHHHHHHHh----hCCCeEEEEecChhhHHHHHHHHhhcCc------
Q 012434 311 -----------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE------ 357 (464)
Q Consensus 311 -----------------------~~~~~~~~~~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~l~~~~~------ 357 (464)
........|...+..++.. ..+.++||||+++..++.+++.|++...
T Consensus 583 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~ 662 (797)
T 4a2q_A 583 YTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 662 (797)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccc
Confidence 0000023455566666654 4568999999999999999999987411
Q ss_pred ---cceeEeeccCcccHHHHHHHHHHHhc-CCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCc
Q 012434 358 ---LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (464)
Q Consensus 358 ---~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 433 (464)
.+.....+||+|+..+|.+++++|++ |+.+|||||+++++|+|+|++++||++++|+|+..|+||+|| ||. +.|
T Consensus 663 ~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g 740 (797)
T 4a2q_A 663 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGS 740 (797)
T ss_dssp EEC----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CC
T ss_pred eEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCc
Confidence 12455667899999999999999999 999999999999999999999999999999999999999999 999 899
Q ss_pred cEEEEeeCccccc
Q 012434 434 RCFTLLHKDEKKG 446 (464)
Q Consensus 434 ~~~~~~~~~~~~~ 446 (464)
.++.++...+..+
T Consensus 741 ~~i~l~~~~~~ee 753 (797)
T 4a2q_A 741 KCILVTSKTEVVE 753 (797)
T ss_dssp CEEEEECCHHHHH
T ss_pred eEEEEEeCCcHHH
Confidence 9999998876644
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-39 Score=340.21 Aligned_cols=323 Identities=19% Similarity=0.206 Sum_probs=239.3
Q ss_pred HHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 012434 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (464)
Q Consensus 43 ~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (464)
...++|. |+++|.+++..+.. ++++++++|||+|||+++.++++..+.. +.++||++|+++|+.|+++.+.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~----g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHT----TCEEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhcc----CCeEEEECChHHHHHHHHHHHH
Confidence 3456784 99999999988765 8999999999999999999888877753 3489999999999999999999
Q ss_pred HhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEE
Q 012434 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (464)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iI 202 (464)
..+. .++.++|+.... .+++|+|+||++|.+.+.+.. ..+.++++||
T Consensus 151 ~~~~----~vglltGd~~~~----------------------------~~~~IvV~Tpe~L~~~L~~~~-~~l~~l~lVV 197 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITIN----------------------------PDAGCLVMTTEILRSMLYRGS-EVMREVAWVI 197 (1010)
T ss_dssp HHHS----CEEEECSSCEEC----------------------------TTCSEEEEEHHHHHHHHHHTC-TTGGGEEEEE
T ss_pred HHhC----CEEEEeCCCccC----------------------------CCCCEEEEcHHHHHHHHHcCc-chhhcCCEEE
Confidence 8764 677788876532 246899999999998877643 5678899999
Q ss_pred EehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccc
Q 012434 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (464)
Q Consensus 203 vDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 282 (464)
+||||++.+..++.....++..++ +..+.+++|||+++....
T Consensus 198 iDEaH~l~d~~rg~~~e~il~~l~--------------------------------------~~~~il~LSATi~n~~e~ 239 (1010)
T 2xgj_A 198 FDEVHYMRDKERGVVWEETIILLP--------------------------------------DKVRYVFLSATIPNAMEF 239 (1010)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHSC--------------------------------------TTCEEEEEECCCTTHHHH
T ss_pred EechhhhcccchhHHHHHHHHhcC--------------------------------------CCCeEEEEcCCCCCHHHH
Confidence 999999988877777777776554 233889999998653221
Q ss_pred hhcc--cccCCeeeecCCccccCcccccccee---------ecc------------------------------------
Q 012434 283 LAQL--DLHHPLFLTTGETRYKLPERLESYKL---------ICE------------------------------------ 315 (464)
Q Consensus 283 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------------------------------------ 315 (464)
..+. ....+..+....... ..+..+.. ...
T Consensus 240 a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~ 316 (1010)
T 2xgj_A 240 AEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQ 316 (1010)
T ss_dssp HHHHHHHHTSCEEEEEECCCS---SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------
T ss_pred HHHHHhhcCCCeEEEecCCCc---ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccccccc
Confidence 1111 111111111110000 00000000 000
Q ss_pred --C--------CchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCcc---------------------------
Q 012434 316 --S--------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL--------------------------- 358 (464)
Q Consensus 316 --~--------~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~--------------------------- 358 (464)
. ......+...+......++||||+++..|+.+++.|...+..
T Consensus 317 ~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~ 396 (1010)
T 2xgj_A 317 TYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELP 396 (1010)
T ss_dssp ------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCH
T ss_pred ccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcch
Confidence 0 122333555555556679999999999999999998763211
Q ss_pred ---------ceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEE----ecC----CCCcchhhh
Q 012434 359 ---------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YDK----PAYIKTYIH 421 (464)
Q Consensus 359 ---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~----~~~----~~s~~~~~Q 421 (464)
...+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||. |+. |.++.+|+|
T Consensus 397 ~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Q 476 (1010)
T 2xgj_A 397 QIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQ 476 (1010)
T ss_dssp HHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHH
T ss_pred hHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhH
Confidence 123788999999999999999999999999999999999999999999998 887 789999999
Q ss_pred hhhhhhcCCC--CccEEEEeeCcccccch
Q 012434 422 RAGRTARAGQ--LGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 422 ~~GR~~R~g~--~g~~~~~~~~~~~~~~~ 448 (464)
|+||+||.|. .|.|+++++.......+
T Consensus 477 r~GRAGR~G~d~~G~vi~l~~~~~e~~~~ 505 (1010)
T 2xgj_A 477 MSGRAGRRGLDDRGIVIMMIDEKMEPQVA 505 (1010)
T ss_dssp HHTTBCCTTTCSSEEEEEEECSCCCHHHH
T ss_pred hhhhcccCCCCCceEEEEEECCCCCHHHH
Confidence 9999999997 49999998765333333
No 29
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.6e-40 Score=333.00 Aligned_cols=327 Identities=17% Similarity=0.220 Sum_probs=237.2
Q ss_pred CHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012434 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 36 ~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~--~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
.+.+.+.++.++| +|+++|.+++..+...+..+ +++++++|||+|||++++++++..+..+ .+++|++||++|
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g----~qvlvlaPtr~L 429 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG----FQTAFMVPTSIL 429 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT----SCEEEECSCHHH
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCcHHH
Confidence 4667777788999 99999999999987644333 5899999999999999999999887653 489999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhc-CCcEEEeCchHHHHhhhcCCC
Q 012434 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRG 192 (464)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiI~T~~~l~~~l~~~~~ 192 (464)
+.|+++.+.+++...++++..++|+.+..... ..+..+.. .++|+|+||+.+.+.
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~------------------~~~~~l~~g~~~IvVgT~~ll~~~------ 485 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKE------------------KIKSGLRNGQIDVVIGTHALIQED------ 485 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHH------------------HHHHHHHSSCCCEEEECTTHHHHC------
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHH------------------HHHHHHhcCCCCEEEECHHHHhhh------
Confidence 99999999999888899999999998765542 23334444 489999999887542
Q ss_pred cCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEe
Q 012434 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (464)
Q Consensus 193 ~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (464)
+.+.++++||+||+|++..... ..+ .......+.+++
T Consensus 486 ~~~~~l~lVVIDEaHr~g~~qr--------~~l-----------------------------------~~~~~~~~vL~m 522 (780)
T 1gm5_A 486 VHFKNLGLVIIDEQHRFGVKQR--------EAL-----------------------------------MNKGKMVDTLVM 522 (780)
T ss_dssp CCCSCCCEEEEESCCCC-------------CCC-----------------------------------CSSSSCCCEEEE
T ss_pred hhccCCceEEecccchhhHHHH--------HHH-----------------------------------HHhCCCCCEEEE
Confidence 4567899999999998621110 000 000123478999
Q ss_pred eeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCCeEEEEecChh-------
Q 012434 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE------- 343 (464)
Q Consensus 273 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~s~~------- 343 (464)
|||+.+...........+...+.... .....+.. ......+...+...+.. ..+++++|||++++
T Consensus 523 SATp~p~tl~~~~~g~~~~s~i~~~p---~~r~~i~~---~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~ 596 (780)
T 1gm5_A 523 SATPIPRSMALAFYGDLDVTVIDEMP---PGRKEVQT---MLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNV 596 (780)
T ss_dssp ESSCCCHHHHHHHTCCSSCEEECCCC---SSCCCCEE---CCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------
T ss_pred eCCCCHHHHHHHHhCCcceeeeeccC---CCCcceEE---EEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhH
Confidence 99986543332221111111111100 00011111 11122233334444433 24678999999764
Q ss_pred -hHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCC-Ccchhhh
Q 012434 344 -STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIH 421 (464)
Q Consensus 344 -~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~-s~~~~~Q 421 (464)
.++.+++.|++....++.+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.+. +...+.|
T Consensus 597 ~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Q 676 (780)
T 1gm5_A 597 KSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQ 676 (780)
T ss_dssp CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 46777887876112347899999999999999999999999999999999999999999999999999985 6888999
Q ss_pred hhhhhhcCCCCccEEEEee
Q 012434 422 RAGRTARAGQLGRCFTLLH 440 (464)
Q Consensus 422 ~~GR~~R~g~~g~~~~~~~ 440 (464)
++||+||.|+.|.|+++++
T Consensus 677 r~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 677 LRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp HHHTSCCSSTTCEEECCCC
T ss_pred HhcccCcCCCCCEEEEEEC
Confidence 9999999999999999987
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.4e-39 Score=340.83 Aligned_cols=301 Identities=18% Similarity=0.273 Sum_probs=217.1
Q ss_pred HHHHHH-HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 012434 39 LKVALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 39 i~~~~~-~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~ 117 (464)
+.+.++ .+|| +|+++|.++++.++. ++++++++|||+|||++++.+++..+. .+.++||++||++|+.|+
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~ 137 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQT 137 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHH
Confidence 334443 4788 699999999988876 899999999999999988887777663 345899999999999999
Q ss_pred HHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcC-CcEEEeCchHHHHhhhcCCCcCCC
Q 012434 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLE 196 (464)
Q Consensus 118 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IiI~T~~~l~~~l~~~~~~~~~ 196 (464)
++.++.++ ..++++..++|+.+.... ...+..+..+ ++|+|+||++|.+++.. +.+.
T Consensus 138 ~~~l~~l~-~~~i~v~~l~Gg~~~~er------------------~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~ 195 (1104)
T 4ddu_A 138 LERLQKLA-DEKVKIFGFYSSMKKEEK------------------EKFEKSFEEDDYHILVFSTQFVSKNREK---LSQK 195 (1104)
T ss_dssp HHHHHTTS-CTTSCEEEECTTCCTTHH------------------HHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTS
T ss_pred HHHHHHhh-CCCCeEEEEeCCCCHHHH------------------HHHHHHHhCCCCCEEEECHHHHHHHHHh---hccc
Confidence 99999977 668999999999876332 1222334444 89999999999888764 5567
Q ss_pred CccEEEEehhhHhhh-----------Hhhhhh-HHHHHHhccccccccccccccccccccccchhhhccccccccCCCCC
Q 012434 197 HLCYLVVDETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (464)
Q Consensus 197 ~~~~iIvDE~H~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
++++||+||||++.. .++... +..++..++... .... ....
T Consensus 196 ~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~----------------~~~~-----------~~~~ 248 (1104)
T 4ddu_A 196 RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGK----------------IYER-----------PKNL 248 (1104)
T ss_dssp CCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTS----------------CCCC-----------CSSC
T ss_pred CcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccch----------------hhhh-----------hccC
Confidence 899999999998764 334444 556665543110 0000 0000
Q ss_pred CceeeEEeeeee-ecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChh
Q 012434 265 PRLVKMVLSATL-TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 343 (464)
Q Consensus 265 ~~~~~i~~sat~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~ 343 (464)
...+.+++|||+ +............ .+...... .....+.+....+ .+...+..++... ++++||||+++.
T Consensus 249 ~~~q~ll~SAT~~p~~~~~~~~~~~l---~i~v~~~~-~~~~~i~~~~~~~---~k~~~L~~ll~~~-~~~~LVF~~s~~ 320 (1104)
T 4ddu_A 249 KPGILVVSSATAKPRGIRPLLFRDLL---NFTVGRLV-SVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEE 320 (1104)
T ss_dssp CCCEEEEECBSSCCCSSTTHHHHHHT---CCCCCBCC-CCCCCEEEEEESC---CCHHHHHHHHHHH-CSSEEEEESSSH
T ss_pred CCceEEEEcCCCCcHHHHHHHhhcce---eEEeccCC-CCcCCceeEEEec---CHHHHHHHHHHhc-CCCEEEEECcHH
Confidence 344899999994 3333221111111 11111111 1222233333322 4566667777764 589999999999
Q ss_pred hHHHHHHHHhhcCccceeEe-eccCcccHHHHHHHHHHHhcCCeeEEEE----cccccccCCCCC-CCeEEEecCCC
Q 012434 344 STHRLCTLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA 414 (464)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~iLi~----t~~~~~Gidip~-~~~vi~~~~~~ 414 (464)
.++.++..|++.+ +.+. .+||. |.+ ++.|++|+.+|||| |+++++|+|+|+ +++||+++.|.
T Consensus 321 ~a~~l~~~L~~~g---~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 321 EGKELYEYLKRFK---FNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHHHHHHHHTT---CCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HHHHHHHHHHhCC---CCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9999999999876 8887 99993 455 99999999999999 999999999999 99999999998
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1e-39 Score=342.63 Aligned_cols=342 Identities=18% Similarity=0.198 Sum_probs=204.8
Q ss_pred HHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc-cCCccEEEEcccHHHHHHHHHHHH
Q 012434 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFA 122 (464)
Q Consensus 44 ~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~ 122 (464)
.-.|+..|+++|.++++.++. ++++++.+|||+|||++++++++..+.... ..+.++||++|+++|+.|+.+.++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp ------CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 344678999999999998876 899999999999999999999988776542 115689999999999999999999
Q ss_pred HhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEE
Q 012434 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (464)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iI 202 (464)
+++...++++..++|+........ .+..+++|+|+||++|.+.+.......+.++++||
T Consensus 318 ~~~~~~~~~v~~~~G~~~~~~~~~---------------------~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liV 376 (936)
T 4a2w_A 318 HHFERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMI 376 (936)
T ss_dssp HHHHTTTCCEEEECCC-----CCH---------------------HHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEE
T ss_pred HHhcccCceEEEEECCcchhhHHH---------------------HhccCCCEEEecHHHHHHHHHcCccccccCCCEEE
Confidence 998877899999999875443211 12345699999999999988875533678899999
Q ss_pred EehhhHhhhHhhh-hhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCcc
Q 012434 203 VDETDRLLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (464)
Q Consensus 203 vDE~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 281 (464)
+||||++...+.. ..+..+....... ..+..+.+++|||+.....
T Consensus 377 iDEaH~~~~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~l~LSATp~~~~~ 422 (936)
T 4a2w_A 377 FDECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNA 422 (936)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHTT----------------------------------CSCCCEEEEEESCCCCTTC
T ss_pred EECccccCCCccHHHHHHHHHHHhhcc----------------------------------CCCcCeEEEecCCcccccc
Confidence 9999998765332 2222222211100 1133478999999853210
Q ss_pred -c-------hh---------------------cccccCCeeeecCCcc-cc-----------------------------
Q 012434 282 -K-------LA---------------------QLDLHHPLFLTTGETR-YK----------------------------- 302 (464)
Q Consensus 282 -~-------~~---------------------~~~~~~~~~~~~~~~~-~~----------------------------- 302 (464)
. .. ......+......... ..
T Consensus 423 ~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~ 502 (936)
T 4a2w_A 423 KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQ 502 (936)
T ss_dssp CSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------
T ss_pred hhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 0 00 0001111100000000 00
Q ss_pred C--------------------------ccc--------------------------------------cccc--------
Q 012434 303 L--------------------------PER--------------------------------------LESY-------- 310 (464)
Q Consensus 303 ~--------------------------~~~--------------------------------------~~~~-------- 310 (464)
. +.. +..+
T Consensus 503 ~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~ 582 (936)
T 4a2w_A 503 NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGP 582 (936)
T ss_dssp ----CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc
Confidence 0 000 0000
Q ss_pred -----------------------eeeccCCchHHHHHHHHHh----hCCCeEEEEecChhhHHHHHHHHhhcCc------
Q 012434 311 -----------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE------ 357 (464)
Q Consensus 311 -----------------------~~~~~~~~~~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~l~~~~~------ 357 (464)
........|...+..++.. ..+.++||||+++..++.+++.|.+...
T Consensus 583 ~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~ 662 (936)
T 4a2w_A 583 YTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 662 (936)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccce
Confidence 0000124455566666665 3567999999999999999999987511
Q ss_pred ---cceeEeeccCcccHHHHHHHHHHHhc-CCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCc
Q 012434 358 ---LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (464)
Q Consensus 358 ---~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 433 (464)
.+.....+||+|+..+|.+++++|+. |+.+|||||+++++|+|+|++++||++++|+|+..|+||+|| ||. +.|
T Consensus 663 ~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g 740 (936)
T 4a2w_A 663 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGS 740 (936)
T ss_dssp EEC----------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CC
T ss_pred eEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCC
Confidence 12445567899999999999999999 999999999999999999999999999999999999999999 999 799
Q ss_pred cEEEEeeCccccc
Q 012434 434 RCFTLLHKDEKKG 446 (464)
Q Consensus 434 ~~~~~~~~~~~~~ 446 (464)
.++.+++..+..+
T Consensus 741 ~vi~Li~~~t~ee 753 (936)
T 4a2w_A 741 KCILVTSKTEVVE 753 (936)
T ss_dssp CEEEEESCHHHHH
T ss_pred EEEEEEeCCCHHH
Confidence 9999998876654
No 32
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.8e-39 Score=322.48 Aligned_cols=314 Identities=18% Similarity=0.186 Sum_probs=225.8
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012434 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
.+|+++|.+++..++. ++++++++|||+|||++++.++...+..+ ..++|||+|+++|+.||.+.++++....
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC---SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC---CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 3799999999998875 68999999999999999998888776643 3489999999999999999999986655
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012434 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
+..+..++|+.....+ ...+.+|+|+||+.+.+. ....+.++++||+||||+
T Consensus 185 ~~~v~~~~~~~~~~~~------------------------~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~ 236 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK------------------------YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHL 236 (510)
T ss_dssp GGGEEECGGGCCTTGG------------------------GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGG
T ss_pred ccceEEEecCCccccc------------------------cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcC
Confidence 6788888887654322 234579999999976442 224467899999999999
Q ss_pred hhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhc-cc
Q 012434 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LD 287 (464)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~-~~ 287 (464)
+.... ...++..+. ...+.+++|||++........ ..
T Consensus 237 ~~~~~----~~~il~~~~--------------------------------------~~~~~l~lSATp~~~~~~~~~~~~ 274 (510)
T 2oca_A 237 ATGKS----ISSIISGLN--------------------------------------NCMFKFGLSGSLRDGKANIMQYVG 274 (510)
T ss_dssp CCHHH----HHHHGGGCT--------------------------------------TCCEEEEEESCGGGCSSCHHHHHH
T ss_pred CCccc----HHHHHHhcc--------------------------------------cCcEEEEEEeCCCCCcccHHHhHH
Confidence 86633 223332221 223788999999655433211 11
Q ss_pred ccCCeeeecCCcccc-----Cc--------------------ccccc-ceeeccCCchHHHHHHHHHhh---CCCeEEEE
Q 012434 288 LHHPLFLTTGETRYK-----LP--------------------ERLES-YKLICESKLKPLYLVALLQSL---GEEKCIVF 338 (464)
Q Consensus 288 ~~~~~~~~~~~~~~~-----~~--------------------~~~~~-~~~~~~~~~~~~~l~~~l~~~---~~~~~lVf 338 (464)
+..+........... .+ ..+.. +........+...+.+++... .++++|||
T Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf 354 (510)
T 2oca_A 275 MFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMF 354 (510)
T ss_dssp HHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 222222211111000 00 00000 001111223333445555443 34556666
Q ss_pred ecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEc-ccccccCCCCCCCeEEEecCCCCcc
Q 012434 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIK 417 (464)
Q Consensus 339 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t-~~~~~Gidip~~~~vi~~~~~~s~~ 417 (464)
++ +++++.+++.|.+.+ ..+..+||+|+..+|.++++.|.+|+.+||||| +++++|+|+|++++||+++++.++.
T Consensus 355 ~~-~~~~~~l~~~L~~~~---~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~ 430 (510)
T 2oca_A 355 KH-VSHGKAIFDLIKNEY---DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKI 430 (510)
T ss_dssp SS-HHHHHHHHHHHHTTC---SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCC
T ss_pred ec-HHHHHHHHHHHHHcC---CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHH
Confidence 66 899999999999876 588999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCccEEEEeeCcc
Q 012434 418 TYIHRAGRTARAGQLGRCFTLLHKDE 443 (464)
Q Consensus 418 ~~~Q~~GR~~R~g~~g~~~~~~~~~~ 443 (464)
.|+|++||+||.|+.|.++++++-.+
T Consensus 431 ~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 431 IVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp HHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred HHHHHHhcccccCCCCceEEEEEeec
Confidence 99999999999998876666665333
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2e-38 Score=337.19 Aligned_cols=330 Identities=17% Similarity=0.187 Sum_probs=244.8
Q ss_pred CCHHHHHHH-HHCCCCccchhhHHhHHhhhCCCCCCC--CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 012434 35 LDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (464)
Q Consensus 35 l~~~i~~~~-~~~~~~~l~~~Q~~~~~~i~~~~~~~~--~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~ 111 (464)
.++...+.+ ..++|. ++++|.++++.++..+.+++ ++++++|||+|||.+++.+++..+.. +.+++|++||+
T Consensus 588 ~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~----g~~vlvlvPt~ 662 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN----HKQVAVLVPTT 662 (1151)
T ss_dssp CCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT----TCEEEEECSSH
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh----CCeEEEEechH
Confidence 455555555 557884 79999999999886554454 89999999999999998888776553 34899999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhc-CCcEEEeCchHHHHhhhcC
Q 012434 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINAT 190 (464)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiI~T~~~l~~~l~~~ 190 (464)
.|+.|+++.+.+.+...++++..+++....... ...+..+.. .++|+|+||+.+.+
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~------------------~~~~~~l~~g~~dIvV~T~~ll~~----- 719 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ------------------TQILAEVAEGKIDILIGTHKLLQS----- 719 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHH------------------HHHHHHHHTTCCSEEEECTHHHHS-----
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHH------------------HHHHHHHhcCCCCEEEECHHHHhC-----
Confidence 999999999999888778899998887655443 222333444 48999999986632
Q ss_pred CCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeE
Q 012434 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (464)
Q Consensus 191 ~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (464)
.+.+.++++||+||+|++... ....+..+. ...+.+
T Consensus 720 -~~~~~~l~lvIiDEaH~~g~~-----~~~~l~~l~--------------------------------------~~~~vl 755 (1151)
T 2eyq_A 720 -DVKFKDLGLLIVDEEHRFGVR-----HKERIKAMR--------------------------------------ANVDIL 755 (1151)
T ss_dssp -CCCCSSEEEEEEESGGGSCHH-----HHHHHHHHH--------------------------------------TTSEEE
T ss_pred -CccccccceEEEechHhcChH-----HHHHHHHhc--------------------------------------CCCCEE
Confidence 245778999999999996332 222222222 223789
Q ss_pred EeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh-hCCCeEEEEecChhhHHHHH
Q 012434 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLC 349 (464)
Q Consensus 271 ~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~lVf~~s~~~~~~l~ 349 (464)
++|||+.+.........+.+...+..... ....+..+. ....+......++.. ..+++++|||++++.++.++
T Consensus 756 ~lSATp~p~~l~~~~~~~~~~~~i~~~~~---~r~~i~~~~---~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~ 829 (1151)
T 2eyq_A 756 TLTATPIPRTLNMAMSGMRDLSIIATPPA---RRLAVKTFV---REYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 829 (1151)
T ss_dssp EEESSCCCHHHHHHHTTTSEEEECCCCCC---BCBCEEEEE---EECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHH
T ss_pred EEcCCCChhhHHHHHhcCCCceEEecCCC---CccccEEEE---ecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHH
Confidence 99999876655544444444333322111 011111111 112222333333333 35789999999999999999
Q ss_pred HHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecC-CCCcchhhhhhhhhhc
Q 012434 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK-PAYIKTYIHRAGRTAR 428 (464)
Q Consensus 350 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~-~~s~~~~~Q~~GR~~R 428 (464)
+.|++.. .+..+..+||+|+..+|.++++.|.+|+.+|||||+++++|+|+|++++||+++. +.+..+|.|++||+||
T Consensus 830 ~~L~~~~-p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR 908 (1151)
T 2eyq_A 830 ERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 908 (1151)
T ss_dssp HHHHHHC-TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCB
T ss_pred HHHHHhC-CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCc
Confidence 9998861 2378999999999999999999999999999999999999999999999999987 5688999999999999
Q ss_pred CCCCccEEEEeeCcc
Q 012434 429 AGQLGRCFTLLHKDE 443 (464)
Q Consensus 429 ~g~~g~~~~~~~~~~ 443 (464)
.|+.|.|++++..++
T Consensus 909 ~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 909 SHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTBCEEEEEEECCGG
T ss_pred CCCceEEEEEECCcc
Confidence 999999999887653
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.2e-39 Score=342.69 Aligned_cols=327 Identities=20% Similarity=0.301 Sum_probs=238.1
Q ss_pred HHHH-HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHH
Q 012434 41 VALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (464)
Q Consensus 41 ~~~~-~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~ 119 (464)
+.+. .+||. | ++|.++++.++. ++++++.+|||+|||+ +.++++..+.. .+.++||++||++|+.|+.+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl-~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILR----KESFAATAPTGVGKTS-FGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHT----TCCEECCCCBTSCSHH-HHHHHHHHHHT---TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHh----CCCEEEEcCCCCCHHH-HHHHHHHHHhh---cCCeEEEEeccHHHHHHHHH
Confidence 4443 48998 9 999999999886 8999999999999998 77777777654 34589999999999999999
Q ss_pred HHHHhccccCc----eEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCC
Q 012434 120 VFAAIAPAVGL----SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195 (464)
Q Consensus 120 ~~~~~~~~~~~----~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~ 195 (464)
.++.++...++ .+..++|+.+...+.. ....+.+ ++|+|+||++|.+.+.+ +
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~------------------~~~~l~~-~~IlV~TP~~L~~~l~~-----L 173 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKEN------------------FMQNLRN-FKIVITTTQFLSKHYRE-----L 173 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHH------------------HHHSGGG-CSEEEEEHHHHHHCSTT-----S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHH------------------HHhhccC-CCEEEEcHHHHHHHHHH-----h
Confidence 99999888788 8999999987655321 1223334 79999999999987765 5
Q ss_pred CCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeee
Q 012434 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (464)
Q Consensus 196 ~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat 275 (464)
++++++|+||||++.+ ++..+..++..+........ .......+.+++|||
T Consensus 174 ~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~---------------------------~~~~~~~q~~l~SAT 224 (1054)
T 1gku_B 174 GHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKT---------------------------KSWVGEARGCLMVST 224 (1054)
T ss_dssp CCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTT---------------------------TEEEECCSSEEEECC
T ss_pred ccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhh---------------------------hhcccCCceEEEEec
Confidence 5899999999999877 56666666665432110000 000123477899999
Q ss_pred eecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhc
Q 012434 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355 (464)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~ 355 (464)
++.. .......+..+..+........ ...+.+... ...+...+..++... ++++||||+++..++.+++.|++.
T Consensus 225 ~t~~-~~~~~~~~~~~~~i~v~~~~~~-~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~ 298 (1054)
T 1gku_B 225 ATAK-KGKKAELFRQLLNFDIGSSRIT-VRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK 298 (1054)
T ss_dssp CCSC-CCTTHHHHHHHHCCCCSCCEEC-CCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS
T ss_pred CCCc-hhHHHHHhhcceEEEccCcccC-cCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc
Confidence 8776 4333333333322222221111 122222222 344555566666655 578999999999999999999864
Q ss_pred CccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEE----cccccccCCCCCC-CeEEEecCC-----------------
Q 012434 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEGV-NNVVNYDKP----------------- 413 (464)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~----t~~~~~Gidip~~-~~vi~~~~~----------------- 413 (464)
+.+..+||++ ..+++.|++|+.+|||| |+++++|+|+|++ ++||+++.|
T Consensus 299 ----~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~ 369 (1054)
T 1gku_B 299 ----FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMV 369 (1054)
T ss_dssp ----SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHH
T ss_pred ----cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHH
Confidence 7889999998 37789999999999999 8999999999995 999999999
Q ss_pred ------------------------------------------------------CCcchhhhhhhhhhcCCCCc--cEEE
Q 012434 414 ------------------------------------------------------AYIKTYIHRAGRTARAGQLG--RCFT 437 (464)
Q Consensus 414 ------------------------------------------------------~s~~~~~Q~~GR~~R~g~~g--~~~~ 437 (464)
.+..+|+||+||+||.|+.| .+++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~ 449 (1054)
T 1gku_B 370 KLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGAS 449 (1054)
T ss_dssp HHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEE
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEE
Confidence 78999999999999987665 4777
Q ss_pred EeeCcccc
Q 012434 438 LLHKDEKK 445 (464)
Q Consensus 438 ~~~~~~~~ 445 (464)
|+..++..
T Consensus 450 ~~~~~d~~ 457 (1054)
T 1gku_B 450 FLLEDDSE 457 (1054)
T ss_dssp EEECSCHH
T ss_pred EEEecCHH
Confidence 77666544
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.9e-39 Score=348.97 Aligned_cols=362 Identities=19% Similarity=0.170 Sum_probs=255.0
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012434 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
|++...+.+...+|..++++|.++++.++. .++|+++++|||+|||+++.+++++.+... .+.+++|++|+++|+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~---~~~nvlv~APTGSGKTliaelail~~l~~~--~~~kavyi~P~raLa 985 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYN---SDDNVFVGAPTGSGKTICAEFAILRMLLQS--SEGRCVYITPMEALA 985 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHS---CCSCEEEECCTTSCCHHHHHHHHHHHHHHC--TTCCEEEECSCHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCCcEEEEeCCCCCchHHHHHHHHHHHHhC--CCCEEEEEcChHHHH
Confidence 455666777777899999999999999886 568999999999999999999999998865 345899999999999
Q ss_pred HHHHHHHHH-hccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCC-
Q 012434 115 LQVKDVFAA-IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG- 192 (464)
Q Consensus 115 ~q~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~- 192 (464)
.|.++.+.+ +....|++|..+.|+.....+ ...+++|+|+||+++..++++...
T Consensus 986 ~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~------------------------~~~~~~IiV~TPEkld~llr~~~~~ 1041 (1724)
T 4f92_B 986 EQVYMDWYEKFQDRLNKKVVLLTGETSTDLK------------------------LLGKGNIIISTPEKWDILSRRWKQR 1041 (1724)
T ss_dssp HHHHHHHHHHHTTTSCCCEEECCSCHHHHHH------------------------HHHHCSEEEECHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhchhcCCEEEEEECCCCcchh------------------------hcCCCCEEEECHHHHHHHHhCcccc
Confidence 999999875 555678999999998654322 123469999999999777765432
Q ss_pred cCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEe
Q 012434 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (464)
Q Consensus 193 ~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (464)
..+++++++|+||+|.+.+ ..+..++.++..+.... .....+.|++++
T Consensus 1042 ~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~-------------------------------~~~~~~~riI~l 1089 (1724)
T 4f92_B 1042 KNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYIS-------------------------------SQIERPIRIVAL 1089 (1724)
T ss_dssp HHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHH-------------------------------HTTSSCCEEEEE
T ss_pred cccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHH-------------------------------hhcCCCceEEEE
Confidence 2477899999999997755 45555555554332100 000134589999
Q ss_pred eeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchH-------HHHHHHHH-hhCCCeEEEEecChhh
Q 012434 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP-------LYLVALLQ-SLGEEKCIVFTSSVES 344 (464)
Q Consensus 273 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~l~-~~~~~~~lVf~~s~~~ 344 (464)
|||+++......+........+....... +..++.+.......... ..+...+. ...++++||||+|+..
T Consensus 1090 SATl~N~~dla~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~ 1167 (1724)
T 4f92_B 1090 SSSLSNAKDVAHWLGCSATSTFNFHPNVR--PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQ 1167 (1724)
T ss_dssp ESCBTTHHHHHHHHTCCSTTEEECCGGGC--SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHH
T ss_pred eCCCCCHHHHHHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHH
Confidence 99996543333343333322222222111 11122221111111111 11222233 3356789999999999
Q ss_pred HHHHHHHHhhcC-------------------------------ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc
Q 012434 345 THRLCTLLNHFG-------------------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (464)
Q Consensus 345 ~~~l~~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~ 393 (464)
|+.++..|.... .....+..+|++|+..+|..+.+.|++|..++||||+
T Consensus 1168 ~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~ 1247 (1724)
T 4f92_B 1168 TRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASR 1247 (1724)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEG
T ss_pred HHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEECh
Confidence 998887764310 0123588899999999999999999999999999999
Q ss_pred cccccCCCCCCCeEEE----e------cCCCCcchhhhhhhhhhcCCC--CccEEEEeeCcccccchhhcccccccccc
Q 012434 394 AMTRGMDVEGVNNVVN----Y------DKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEKKGAIGRSLFHQSRVLG 460 (464)
Q Consensus 394 ~~~~Gidip~~~~vi~----~------~~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (464)
.++.|+|+|...+||. + ..|.++.+|.||+|||||.|. .|.+++++.. ....++.+.+....+++|
T Consensus 1248 tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~-~~~~~~~~ll~~~~pveS 1325 (1724)
T 4f92_B 1248 SLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQG-SKKDFFKKFLYEPLPVES 1325 (1724)
T ss_dssp GGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEG-GGHHHHHHHTTSCBCCCC
T ss_pred HHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecc-hHHHHHHHHhCCCCceee
Confidence 9999999998777662 2 124678899999999999987 5777766654 455666677777777665
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.7e-38 Score=314.72 Aligned_cols=358 Identities=18% Similarity=0.177 Sum_probs=247.6
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012434 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 45 ~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.+|| +|++.|..+++.++. |+ ++.++||+|||++|.+|++...+. +..++|||||++||.|.++++..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~----G~--Iaea~TGeGKTlaf~LP~~l~aL~----g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHD----GN--IAEMKTGEGKTLTSTLPVYLNALT----GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHT----TS--EEECCTTSCHHHHHHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhC----CC--EEEccCCcHHHHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4799 999999999988875 66 999999999999999999854433 347999999999999999999999
Q ss_pred ccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HHhhhcC-----CCcCCCCc
Q 012434 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHL 198 (464)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~~l~~~-----~~~~~~~~ 198 (464)
...+|+++++++|+.+...+. ...+++|+|+||+.| .+++... ..+.++.+
T Consensus 148 ~~~lgl~v~~i~gg~~~~~r~-----------------------~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~ 204 (844)
T 1tf5_A 148 FEFLGLTVGLNLNSMSKDEKR-----------------------EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPL 204 (844)
T ss_dssp HHHTTCCEEECCTTSCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred HhhcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCC
Confidence 999999999999997654331 223579999999999 4544332 22557889
Q ss_pred cEEEEehhhHhh-hH---------------hhhhhHHHHHHhccc---------ccccccc---------------cccc
Q 012434 199 CYLVVDETDRLL-RE---------------AYQAWLPTVLQLTRS---------DNENRFS---------------DAST 238 (464)
Q Consensus 199 ~~iIvDE~H~~~-~~---------------~~~~~~~~~~~~~~~---------~~~~~~~---------------~~~~ 238 (464)
.++|+||||.++ +. ++...+..++..++. ..+..+. ..+.
T Consensus 205 ~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsa 284 (844)
T 1tf5_A 205 HFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDV 284 (844)
T ss_dssp CEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSG
T ss_pred CEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCC
Confidence 999999999987 54 256677778777652 1111000 0000
Q ss_pred ccccccccchh-------hhc-----------------cccc-----------c------ccCCC--------------C
Q 012434 239 FLPSAFGSLKT-------IRR-----------------CGVE-----------R------GFKDK--------------P 263 (464)
Q Consensus 239 ~~~~~~~~~~~-------~~~-----------------~~~~-----------~------~~~~~--------------~ 263 (464)
-.+.....+.. ..+ ++.. . ...-. .
T Consensus 285 t~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~f 364 (844)
T 1tf5_A 285 KHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYF 364 (844)
T ss_dssp GGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHH
Confidence 00000000000 000 0000 0 00000 0
Q ss_pred CCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCCeEEEEecC
Q 012434 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSS 341 (464)
Q Consensus 264 ~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~s 341 (464)
....+...+|+|.......+...+-.+.+.++... .....-...........|...+...+.. ..++++||||+|
T Consensus 365 r~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~---p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s 441 (844)
T 1tf5_A 365 RMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNR---PVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 441 (844)
T ss_dssp TTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSS---CCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHhhhccCCcccchhHHHHHHHhCCceEEecCCC---CcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 00113456777765444444333322222222111 1111111123344556777788777754 356789999999
Q ss_pred hhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCC--------CCCeEEEecCC
Q 012434 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE--------GVNNVVNYDKP 413 (464)
Q Consensus 342 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip--------~~~~vi~~~~~ 413 (464)
++.++.+++.|.+.+ +++..+||++...+|..+.++++.| .|+|||+++++|+|++ +..+||.++.|
T Consensus 442 ~~~se~Ls~~L~~~g---i~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 442 VETSELISKLLKNKG---IPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERH 516 (844)
T ss_dssp HHHHHHHHHHHHTTT---CCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCC
T ss_pred HHHHHHHHHHHHHCC---CCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCC
Confidence 999999999999877 8899999999888877666666555 6999999999999999 78899999999
Q ss_pred CCcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012434 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 414 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
.|...|.||+||+||.|..|.+++|++.++.
T Consensus 517 ~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 517 ESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred CCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 9999999999999999999999999987764
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.4e-38 Score=347.44 Aligned_cols=359 Identities=18% Similarity=0.222 Sum_probs=249.5
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc-------cCCccEEEE
Q 012434 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLRALVV 107 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~-------~~~~~~lil 107 (464)
||++.+..++ ||++|+++|.++++.++. .++|+++++|||+|||+++.+++++.+.... ..+.+++|+
T Consensus 66 Lp~~~~~~f~--g~~~ln~iQs~~~~~al~---~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyi 140 (1724)
T 4f92_B 66 LPKYAQAGFE--GFKTLNRIQSKLYRAALE---TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYI 140 (1724)
T ss_dssp SCGGGSTTCT--TCSBCCHHHHHTHHHHHT---CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEE
T ss_pred cCHHHHHhcC--CCCCCCHHHHHHHHHHHc---CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEE
Confidence 5666555443 699999999999998876 6789999999999999999999999987532 235689999
Q ss_pred cccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhh
Q 012434 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (464)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l 187 (464)
+|+++|+.|..+.+.+.+...|++|..++|+.....+ ...+++|+|+||+++...+
T Consensus 141 aP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~------------------------~~~~~~IlVtTpEkld~ll 196 (1724)
T 4f92_B 141 APMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE------------------------EISATQIIVCTPEKWDIIT 196 (1724)
T ss_dssp CSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT------------------------TGGGCSEEEECHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc------------------------ccCCCCEEEECHHHHHHHH
Confidence 9999999999999999888889999999998764332 1235799999999986666
Q ss_pred hcCCC-cCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCc
Q 012434 188 NATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (464)
Q Consensus 188 ~~~~~-~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
++... ..++++++||+||+|.+.+ ..+..++.++..+..... ...+.
T Consensus 197 r~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~-------------------------------~~~~~ 244 (1724)
T 4f92_B 197 RKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIE-------------------------------MTQED 244 (1724)
T ss_dssp TSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHH-------------------------------HHTCC
T ss_pred cCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHH-------------------------------hCCCC
Confidence 55332 2367899999999996644 556666655543211000 00034
Q ss_pred eeeEEeeeeeecCccchhc-ccccCC---eeeecCCccccCccccccceeeccCCch---HHH----HHHHHHh-hCCCe
Q 012434 267 LVKMVLSATLTQDPNKLAQ-LDLHHP---LFLTTGETRYKLPERLESYKLICESKLK---PLY----LVALLQS-LGEEK 334 (464)
Q Consensus 267 ~~~i~~sat~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----l~~~l~~-~~~~~ 334 (464)
.|+|++|||+++. ..+.. .....+ ..+.... .|..+............ ... +...+.. ..+++
T Consensus 245 ~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~----RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 319 (1724)
T 4f92_B 245 VRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSF----RPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ 319 (1724)
T ss_dssp CEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGG----CSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred CcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCC----ccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCc
Confidence 5899999998643 33222 211110 1111111 11222222222222211 111 1222222 24568
Q ss_pred EEEEecChhhHHHHHHHHhhcC----------------------------------ccceeEeeccCcccHHHHHHHHHH
Q 012434 335 CIVFTSSVESTHRLCTLLNHFG----------------------------------ELRIKIKEYSGLQRQSVRSKTLKA 380 (464)
Q Consensus 335 ~lVf~~s~~~~~~l~~~l~~~~----------------------------------~~~~~~~~~~~~~~~~~r~~~~~~ 380 (464)
+||||+|++.|+.+++.|.+.. .....++.+||+|+..+|..+.+.
T Consensus 320 ~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~ 399 (1724)
T 4f92_B 320 VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDL 399 (1724)
T ss_dssp EEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHH
Confidence 9999999999999988886421 012347889999999999999999
Q ss_pred HhcCCeeEEEEcccccccCCCCCCCeEEE----ecC------CCCcchhhhhhhhhhcCCC--CccEEEEeeCcccccch
Q 012434 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVN----YDK------PAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 381 f~~~~~~iLi~t~~~~~Gidip~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~~~ 448 (464)
|++|..++|+||++++.|||+|..++||. +++ +.++.+|.||+|||||.|. .|.++++...++. ..+
T Consensus 400 F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~-~~~ 478 (1724)
T 4f92_B 400 FADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGEL-QYY 478 (1724)
T ss_dssp HHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTC-CHH
T ss_pred HHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhH-HHH
Confidence 99999999999999999999998877774 332 4578899999999999874 6777777765544 344
Q ss_pred hhcccccccccc
Q 012434 449 GRSLFHQSRVLG 460 (464)
Q Consensus 449 ~~~~~~~~~~~~ 460 (464)
...+..+.+++|
T Consensus 479 ~~ll~~~~pieS 490 (1724)
T 4f92_B 479 LSLLNQQLPIES 490 (1724)
T ss_dssp HHHTTTCSCCCC
T ss_pred HHHHcCCCcchh
Confidence 455555556655
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.7e-39 Score=330.69 Aligned_cols=340 Identities=19% Similarity=0.249 Sum_probs=218.3
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc--CCccEEEEcccHHHHHHH-HHHHHHhcc
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQV-KDVFAAIAP 126 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~--~~~~~lil~P~~~L~~q~-~~~~~~~~~ 126 (464)
.|+++|.+++..++. ++++++.+|||+|||++++++++..+..+.. .+.++||++|+++|+.|+ .+.+++++.
T Consensus 7 ~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 799999999999886 8899999999999999999999988876522 225899999999999999 999999876
Q ss_pred ccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhc-----CCCcCCCCccEE
Q 012434 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-----TRGFTLEHLCYL 201 (464)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~-----~~~~~~~~~~~i 201 (464)
. ++++..++|+....... ..+..+++|+|+||+.|.+.+.. ...+.+.++++|
T Consensus 83 ~-~~~v~~~~g~~~~~~~~---------------------~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lv 140 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKISF---------------------PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 140 (699)
T ss_dssp T-TSCEEEEC----CCCCH---------------------HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEE
T ss_pred c-CceEEEEeCCcchhhHH---------------------HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEE
Confidence 5 48899999987543321 22335679999999999987742 223567889999
Q ss_pred EEehhhHhhhHhhhhh-HHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCc
Q 012434 202 VVDETDRLLREAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (464)
Q Consensus 202 IvDE~H~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 280 (464)
|+||||++........ ...++........ .........+..+.+++|||+....
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~-------------------------~~~~~~~~~~~~~il~lTATp~~~~ 195 (699)
T 4gl2_A 141 IIDECHHTNKEAVYNNIMRHYLMQKLKNNR-------------------------LKKENKPVIPLPQILGLTASPGVGG 195 (699)
T ss_dssp EEESGGGCBTTBSSCSHHHHHHHHHHHHHH-------------------------HHC----CCCCCEEEEECSCCCCCS
T ss_pred EEECccccCccchHHHHHHHHHHhhhcccc-------------------------cccccccCCCCCEEEEecccccccc
Confidence 9999998854432222 2222211100000 0000001113347899999997631
Q ss_pred c--------chhc----c-----------------cccCCee-eecCCccccCc------------------cccccc--
Q 012434 281 N--------KLAQ----L-----------------DLHHPLF-LTTGETRYKLP------------------ERLESY-- 310 (464)
Q Consensus 281 ~--------~~~~----~-----------------~~~~~~~-~~~~~~~~~~~------------------~~~~~~-- 310 (464)
. .... . ....|.. +.........+ .....+
T Consensus 196 ~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~ 275 (699)
T 4gl2_A 196 ATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGT 275 (699)
T ss_dssp CCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSS
T ss_pred cccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccc
Confidence 1 0000 0 0011100 00000000000 000000
Q ss_pred --------------------------------------------------------------------------------
Q 012434 311 -------------------------------------------------------------------------------- 310 (464)
Q Consensus 311 -------------------------------------------------------------------------------- 310 (464)
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (699)
T 4gl2_A 276 QPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETD 355 (699)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhH
Confidence
Q ss_pred -----------------ee-eccCCchHHHHHHHHHh----hC-CCeEEEEecChhhHHHHHHHHhhcC---ccceeEee
Q 012434 311 -----------------KL-ICESKLKPLYLVALLQS----LG-EEKCIVFTSSVESTHRLCTLLNHFG---ELRIKIKE 364 (464)
Q Consensus 311 -----------------~~-~~~~~~~~~~l~~~l~~----~~-~~~~lVf~~s~~~~~~l~~~l~~~~---~~~~~~~~ 364 (464)
.. ......+...+..++.. .. ++++||||+++..++.+++.|++.. ..++.+..
T Consensus 356 ~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~ 435 (699)
T 4gl2_A 356 RFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHH 435 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEE
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEE
Confidence 00 00011222223333332 23 7899999999999999999998751 11388999
Q ss_pred ccCc--------ccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEE
Q 012434 365 YSGL--------QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436 (464)
Q Consensus 365 ~~~~--------~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 436 (464)
+||+ |+..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|+||+|||+|.| .++
T Consensus 436 lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~ 512 (699)
T 4gl2_A 436 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STY 512 (699)
T ss_dssp CCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEE
T ss_pred EECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceE
Confidence 9999 99999999999999999999999999999999999999999999999999999999976654 444
Q ss_pred EEeeCcc
Q 012434 437 TLLHKDE 443 (464)
Q Consensus 437 ~~~~~~~ 443 (464)
+++...+
T Consensus 513 ~l~~~~~ 519 (699)
T 4gl2_A 513 VLVAHSG 519 (699)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 4554433
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.7e-38 Score=332.96 Aligned_cols=317 Identities=16% Similarity=0.157 Sum_probs=232.2
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012434 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 45 ~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.++| +|+++|.+++..+.. ++++++.+|||+|||+++.+++...+.. +.+++|++|+++|+.|+++.+++.
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~~----g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHRN----MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHHT----TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCC-CCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4577 599999999988876 8999999999999999988887766543 347999999999999999999987
Q ss_pred ccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEe
Q 012434 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (464)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvD 204 (464)
+. ++.+..++|+.... ...+|+|+||+.|.+.+.... ..+.++++||+|
T Consensus 106 ~~--~~~v~~l~G~~~~~----------------------------~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~lvViD 154 (997)
T 4a4z_A 106 FD--DVNIGLITGDVQIN----------------------------PDANCLIMTTEILRSMLYRGA-DLIRDVEFVIFD 154 (997)
T ss_dssp C----CCEEEECSSCEEC----------------------------TTSSEEEEEHHHHHHHHHHTC-SGGGGEEEEEEC
T ss_pred cC--CCeEEEEeCCCccC----------------------------CCCCEEEECHHHHHHHHHhCc-hhhcCCCEEEEE
Confidence 65 67888999876532 335999999999998887644 457789999999
Q ss_pred hhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchh
Q 012434 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284 (464)
Q Consensus 205 E~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 284 (464)
|||++.+.+++..+..++..++. ..+.+++|||+++......
T Consensus 155 EaH~l~d~~~g~~~e~ii~~l~~--------------------------------------~v~iIlLSAT~~n~~ef~~ 196 (997)
T 4a4z_A 155 EVHYVNDQDRGVVWEEVIIMLPQ--------------------------------------HVKFILLSATVPNTYEFAN 196 (997)
T ss_dssp CTTCCCTTCTTCCHHHHHHHSCT--------------------------------------TCEEEEEECCCTTHHHHHH
T ss_pred CcccccccchHHHHHHHHHhccc--------------------------------------CCCEEEEcCCCCChHHHHH
Confidence 99999888888878877766542 3378889999754321111
Q ss_pred cccc--------------cCCeeee--cCCccccC---------------------------------------------
Q 012434 285 QLDL--------------HHPLFLT--TGETRYKL--------------------------------------------- 303 (464)
Q Consensus 285 ~~~~--------------~~~~~~~--~~~~~~~~--------------------------------------------- 303 (464)
+... ..|.... ........
T Consensus 197 ~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (997)
T 4a4z_A 197 WIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRG 276 (997)
T ss_dssp HHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------------
T ss_pred HHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccc
Confidence 1110 0011000 00000000
Q ss_pred -------------------------------ccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHH
Q 012434 304 -------------------------------PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (464)
Q Consensus 304 -------------------------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l 352 (464)
......+........+...+...+......++||||+++..|+.++..|
T Consensus 277 ~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L 356 (997)
T 4a4z_A 277 GSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWL 356 (997)
T ss_dssp ----------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH
Confidence 0000001111123344566777777777789999999999999999999
Q ss_pred hhcCcc------------------------------------ceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccccc
Q 012434 353 NHFGEL------------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (464)
Q Consensus 353 ~~~~~~------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~ 396 (464)
.+.+.. ...+..+||+|+..+|..+++.|.+|..+|||||++++
T Consensus 357 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a 436 (997)
T 4a4z_A 357 EGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFA 436 (997)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhh
Confidence 764311 12478899999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEecCCC---------CcchhhhhhhhhhcCCC--CccEEEEee
Q 012434 397 RGMDVEGVNNVVNYDKPA---------YIKTYIHRAGRTARAGQ--LGRCFTLLH 440 (464)
Q Consensus 397 ~Gidip~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~g~--~g~~~~~~~ 440 (464)
+|+|+|+ ..||+.+.+. |+..|+|++||+||.|. .|.|++++.
T Consensus 437 ~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 437 MGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred CCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 9999999 6666665554 89999999999999984 555665553
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5e-38 Score=309.11 Aligned_cols=300 Identities=25% Similarity=0.311 Sum_probs=217.3
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.|+++|.+++..+.. ++++++++|||+|||++++.++... +.++||++|+++|+.||.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 799999999888775 6779999999999999988877653 347999999999999999999984 6
Q ss_pred ce-EEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012434 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 130 ~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
++ +..++|+.. ...+|+|+||+.+...+... ..++++||+||||+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~ 203 (472)
T 2fwr_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (472)
T ss_dssp GGGEEEBSSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGG
T ss_pred CcceEEECCCcC------------------------------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcC
Confidence 77 888888754 23589999999997766431 24589999999999
Q ss_pred hhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCc--------
Q 012434 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-------- 280 (464)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~-------- 280 (464)
+.+..+.. +...+ +..+.+++|||+....
T Consensus 204 ~~~~~~~~----~~~~~---------------------------------------~~~~~l~lSATp~~~~~~~~~l~~ 240 (472)
T 2fwr_A 204 LPAESYVQ----IAQMS---------------------------------------IAPFRLGLTATFEREDGRHEILKE 240 (472)
T ss_dssp TTSTTTHH----HHHTC---------------------------------------CCSEEEEEESCCCCTTSGGGSHHH
T ss_pred CCChHHHH----HHHhc---------------------------------------CCCeEEEEecCccCCCCHHHHHHH
Confidence 87665543 22222 1125677888876321
Q ss_pred -----------cchhcccccCCeeee--cC--Cccc---------------------cCccccccc--------------
Q 012434 281 -----------NKLAQLDLHHPLFLT--TG--ETRY---------------------KLPERLESY-------------- 310 (464)
Q Consensus 281 -----------~~~~~~~~~~~~~~~--~~--~~~~---------------------~~~~~~~~~-------------- 310 (464)
.......+.++.... .. .... .....+..+
T Consensus 241 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (472)
T 2fwr_A 241 VVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEAL 320 (472)
T ss_dssp HTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTT
T ss_pred HhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHH
Confidence 111111111111100 00 0000 000000000
Q ss_pred -------eeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhc
Q 012434 311 -------KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (464)
Q Consensus 311 -------~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 383 (464)
...+....+...+.+++....++++||||++++.++.+++.|. +..+||+++..+|.++++.|++
T Consensus 321 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 321 RAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------CCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------cceeeCCCCHHHHHHHHHHHhC
Confidence 0112344566778888888788999999999999999999873 4568999999999999999999
Q ss_pred CCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCC-cc--EEEEeeCcccccchh
Q 012434 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL-GR--CFTLLHKDEKKGAIG 449 (464)
Q Consensus 384 ~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~-g~--~~~~~~~~~~~~~~~ 449 (464)
|+.+|||+|+++++|+|+|++++||+++.|+|+..|+|++||+||.|+. +. ++.+++.++.++.+.
T Consensus 393 g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~ 461 (472)
T 2fwr_A 393 GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTA 461 (472)
T ss_dssp SSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-----
T ss_pred CCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHH
Confidence 9999999999999999999999999999999999999999999999854 33 455667666666554
No 41
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3e-36 Score=299.17 Aligned_cols=358 Identities=17% Similarity=0.145 Sum_probs=237.2
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012434 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
+|. +|++.|..++..++. |+ ++.++||+|||++|++|++..... +..++||+||++||.|.++++..+.
T Consensus 71 lg~-~p~~VQ~~~i~~ll~----G~--Iaem~TGsGKTlaf~LP~l~~~l~----g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNE----RC--IAEMRTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHS----SE--EEECCTTSCHHHHHHHHHHHHHTT----SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccC----Ce--eeeecCCchHHHHHHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 464 899999999887775 65 999999999999999999865443 3479999999999999999999999
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HHhhhcCC-----CcCCCCcc
Q 012434 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~~l~~~~-----~~~~~~~~ 199 (464)
..+|+++++++|+.+...+ ....+++|+|+||+.| .+++...- .+.++++.
T Consensus 140 ~~lgl~v~~i~GG~~~~~r-----------------------~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~ 196 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAPAK-----------------------REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLH 196 (853)
T ss_dssp HHTTCCEEECCTTCCHHHH-----------------------HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCC
T ss_pred HhcCCeEEEEeCCCCHHHH-----------------------HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCc
Confidence 9999999999999765322 1223579999999999 67665432 24578899
Q ss_pred EEEEehhhHhh-hH---------------hhhhhHHHHHHhcccc--------------------ccc------------
Q 012434 200 YLVVDETDRLL-RE---------------AYQAWLPTVLQLTRSD--------------------NEN------------ 231 (464)
Q Consensus 200 ~iIvDE~H~~~-~~---------------~~~~~~~~~~~~~~~~--------------------~~~------------ 231 (464)
++|+||||.++ +. ++...+..++..+... ...
T Consensus 197 ~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~ 276 (853)
T 2fsf_A 197 YALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEE 276 (853)
T ss_dssp EEEESCHHHHTTTTTTCEEEEEEC--------------------------------------------------------
T ss_pred EEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHH
Confidence 99999999998 33 2445555666555421 000
Q ss_pred -------------cccccccccccccc----cchhhh-------ccc---------------------cccccCC---C-
Q 012434 232 -------------RFSDASTFLPSAFG----SLKTIR-------RCG---------------------VERGFKD---K- 262 (464)
Q Consensus 232 -------------~~~~~~~~~~~~~~----~~~~~~-------~~~---------------------~~~~~~~---~- 262 (464)
-++.....+..... +...+. +.+ +-..... .
T Consensus 277 ~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~ 356 (853)
T 2fsf_A 277 LLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQ 356 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccce
Confidence 00000000000000 000000 000 0000000 0
Q ss_pred ----------------CCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHH
Q 012434 263 ----------------PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (464)
Q Consensus 263 ----------------~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 326 (464)
.....+..++|+|.......+...+-.+.+.++. ..+.. ..-....+......|...+...
T Consensus 357 I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPt--n~p~~-R~d~~d~v~~~~~~K~~al~~~ 433 (853)
T 2fsf_A 357 IQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPT--NRPMI-RKDLPDLVYMTEAEKIQAIIED 433 (853)
T ss_dssp CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCC--SSCCC-CEECCCEEESSHHHHHHHHHHH
T ss_pred ecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCC--CCCce-eecCCcEEEeCHHHHHHHHHHH
Confidence 0001134556676654444333333222222221 11111 1111223445566788888887
Q ss_pred HHh--hCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCC
Q 012434 327 LQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404 (464)
Q Consensus 327 l~~--~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~ 404 (464)
+.. ..+.++||||.|++.++.+++.|++.+ +++..+||++...++..+.++|+.| .|+|||+++++|+||+..
T Consensus 434 i~~~~~~gqpvLVft~sie~se~Ls~~L~~~g---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~ 508 (853)
T 2fsf_A 434 IKERTAKGQPVLVGTISIEKSELVSNELTKAG---IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLG 508 (853)
T ss_dssp HHHHHTTTCCEEEEESSHHHHHHHHHHHHHTT---CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTT
T ss_pred HHHHhcCCCCEEEEECcHHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCC
Confidence 754 356789999999999999999999887 8899999999888888888888887 699999999999999963
Q ss_pred -------------------------------------CeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012434 405 -------------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 405 -------------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
.+||.++.|.|...|.|++||+||.|.+|.+++|++.++.-
T Consensus 509 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 509 GSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp CCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred CchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 59999999999999999999999999999999999877643
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.4e-35 Score=294.73 Aligned_cols=358 Identities=18% Similarity=0.153 Sum_probs=249.6
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012434 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 45 ~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.+|+ +|++.|..++..++. |+ ++.++||+|||+++.+|++...+. +..++|||||+.||.|.++++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~----G~--Iaem~TGeGKTLa~~LP~~l~aL~----g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHL----GN--VAEMKTGEGKTLTCVLPAYLNALA----GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHT----TE--EEECCTTSCHHHHTHHHHHHHHTT----TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhc----CC--EEEecCCCccHHHHHHHHHHHHHh----CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3688 999999999888775 65 999999999999999999755443 236999999999999999999999
Q ss_pred ccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HHhhhcC-----CCcCCCCc
Q 012434 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHL 198 (464)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~~l~~~-----~~~~~~~~ 198 (464)
...+|+++++++|+.+...+. ...+++|+++||+.| .+++... ..+.++.+
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r~-----------------------~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l 232 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDERR-----------------------VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGH 232 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred HhhcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCC
Confidence 999999999999987643321 223479999999999 5666543 13557789
Q ss_pred cEEEEehhhHhhh----------------HhhhhhHHHHHHhccc---------cccc------------------cccc
Q 012434 199 CYLVVDETDRLLR----------------EAYQAWLPTVLQLTRS---------DNEN------------------RFSD 235 (464)
Q Consensus 199 ~~iIvDE~H~~~~----------------~~~~~~~~~~~~~~~~---------~~~~------------------~~~~ 235 (464)
.++|+||||.++. .++...+..++..+.. .... -++.
T Consensus 233 ~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsa 312 (922)
T 1nkt_A 233 HYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEA 312 (922)
T ss_dssp CEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCS
T ss_pred CEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCC
Confidence 9999999999983 3567778888887752 1111 0111
Q ss_pred cccccccccc----cchhhhc-------ccc---ccccCCC--------------------------------------C
Q 012434 236 ASTFLPSAFG----SLKTIRR-------CGV---ERGFKDK--------------------------------------P 263 (464)
Q Consensus 236 ~~~~~~~~~~----~~~~~~~-------~~~---~~~~~~~--------------------------------------~ 263 (464)
....+...+. +...+.+ .+. ...+... .
T Consensus 313 t~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyf 392 (922)
T 1nkt_A 313 ANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYF 392 (922)
T ss_dssp TTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHH
Confidence 1000000000 0000000 000 0000000 0
Q ss_pred CCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHh--hCCCeEEEEecC
Q 012434 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSS 341 (464)
Q Consensus 264 ~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lVf~~s 341 (464)
....+..++|+|......++...+-.+.+.++... +..... ....+......|...+...+.. ..++++||||.|
T Consensus 393 r~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~--p~~R~d-~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~S 469 (922)
T 1nkt_A 393 RLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNM--PMIRED-QSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTS 469 (922)
T ss_dssp TTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSS--CCCCEE-CCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCC--Cccccc-CCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 01124566777775444444333322322222211 111111 1123344556688777777754 356789999999
Q ss_pred hhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCC-----------------
Q 012434 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV----------------- 404 (464)
Q Consensus 342 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~----------------- 404 (464)
++.++.+++.|++.+ +++..+||++...++..+.++|+.| .|+|||+++++|+||+..
T Consensus 470 ie~sE~Ls~~L~~~G---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~ 544 (922)
T 1nkt_A 470 VERSEYLSRQFTKRR---IPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLD 544 (922)
T ss_dssp HHHHHHHHHHHHHTT---CCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhcccc
Confidence 999999999999887 8899999999877777777778777 699999999999999964
Q ss_pred -----------------------------------CeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012434 405 -----------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 405 -----------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
.+||.++.|.|...|.|++||+||.|.+|.+++|++.++.
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 545 PVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4899999999999999999999999999999999987765
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.2e-35 Score=288.53 Aligned_cols=288 Identities=15% Similarity=0.187 Sum_probs=202.6
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCE-EEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012434 47 GISSLFPVQVAVWQETIGPGLFERDL-CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 47 ~~~~l~~~Q~~~~~~i~~~~~~~~~~-li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
|+..+++.|. +++.+++ ++++ ++.+|||+|||++++++++..+... +.+++|++||++|+.|+.+.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~---~~~~lvl~Ptr~La~Q~~~~l~g-- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFR----KKRLTIMDLHPGAGKTKRILPSIVREALLR---RLRTLILAPTRVVAAEMEEALRG-- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGS----TTCEEEECCCTTSSCCTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTT--
T ss_pred CCCCCCCcHH-HHHHHHh----cCCeEEEECCCCCCHhhHHHHHHHHHHHhc---CCcEEEECCCHHHHHHHHHHhcC--
Confidence 6778888885 5665554 6555 9999999999999999988776653 45899999999999999988752
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEeh
Q 012434 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE 205 (464)
..+....+.... ....+..|.++|++.+.+.+... ..+.++++||+||
T Consensus 71 ----~~v~~~~~~~~~--------------------------~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDE 118 (451)
T 2jlq_A 71 ----LPIRYQTPAVKS--------------------------DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDE 118 (451)
T ss_dssp ----SCEEECCTTCSC--------------------------CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEET
T ss_pred ----ceeeeeeccccc--------------------------cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeC
Confidence 233221111100 01234578899999988766543 4467899999999
Q ss_pred hhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhc
Q 012434 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (464)
Q Consensus 206 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 285 (464)
||++ +..+......+...... +..+.+++|||++........
T Consensus 119 ah~~-~~~~~~~~~~~~~~~~~-------------------------------------~~~~~i~~SAT~~~~~~~~~~ 160 (451)
T 2jlq_A 119 AHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTATPPGSTDPFPQ 160 (451)
T ss_dssp TTCC-SHHHHHHHHHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCC
T ss_pred CccC-CcchHHHHHHHHHhhcC-------------------------------------CCceEEEEccCCCccchhhhc
Confidence 9976 33322222222211110 234899999999664433221
Q ss_pred ccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeec
Q 012434 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (464)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~ 365 (464)
..+..+.... ..+. ..+ ... ...+.. .++++||||++++.++.+++.|++.+ +.+..+
T Consensus 161 ---~~~~~~~~~~---~~p~--~~~------~~~----~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g---~~~~~l 218 (451)
T 2jlq_A 161 ---SNSPIEDIER---EIPE--RSW------NTG----FDWITD-YQGKTVWFVPSIKAGNDIANCLRKSG---KRVIQL 218 (451)
T ss_dssp ---CSSCEEEEEC---CCCS--SCC------SSS----CHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTT---CCEEEE
T ss_pred ---CCCceEecCc---cCCc--hhh------HHH----HHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcC---CeEEEC
Confidence 2222221111 1110 001 001 122222 36699999999999999999999876 788899
Q ss_pred cCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEec--------------------CCCCcchhhhhhhh
Q 012434 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD--------------------KPAYIKTYIHRAGR 425 (464)
Q Consensus 366 ~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~--------------------~~~s~~~~~Q~~GR 425 (464)
|+++. .++++.|++|+.+|||||+++++|+|+|+ ++||+++ .|.+..+|+||+||
T Consensus 219 h~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GR 293 (451)
T 2jlq_A 219 SRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGR 293 (451)
T ss_dssp CTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTT
T ss_pred CHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccc
Confidence 99874 57899999999999999999999999999 9999988 88999999999999
Q ss_pred hhcCCC-CccEEEEeeC
Q 012434 426 TARAGQ-LGRCFTLLHK 441 (464)
Q Consensus 426 ~~R~g~-~g~~~~~~~~ 441 (464)
+||.|+ .|.+++|+..
T Consensus 294 aGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 294 IGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp SSCCTTCCCEEEEECSC
T ss_pred cCCCCCCCccEEEEeCC
Confidence 999997 7888777643
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=5.9e-35 Score=298.93 Aligned_cols=337 Identities=17% Similarity=0.198 Sum_probs=233.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEE
Q 012434 27 CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 106 (464)
Q Consensus 27 ~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~li 106 (464)
.+|+.++ +++.+.+.++..+ ..|...|+.++..++. .++++++.+|||+|||+..-..++...... ..+.++++
T Consensus 72 ~~f~~~~-l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~---~~~~vii~gpTGSGKTtllp~ll~~~~~~~-~~g~~ilv 145 (773)
T 2xau_A 72 NPFTGRE-FTPKYVDILKIRR-ELPVHAQRDEFLKLYQ---NNQIMVFVGETGSGKTTQIPQFVLFDEMPH-LENTQVAC 145 (773)
T ss_dssp CTTTCSB-CCHHHHHHHHHHT-TSGGGGGHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHHHHHHCGG-GGTCEEEE
T ss_pred CCccccC-CCHHHHHHHHHhh-cCChHHHHHHHHHHHh---CCCeEEEECCCCCCHHHHHHHHHHHhcccc-CCCceEEe
Confidence 3466664 9999999999888 6899999999877765 467899999999999994222222211111 12446999
Q ss_pred EcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHh
Q 012434 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (464)
Q Consensus 107 l~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~ 186 (464)
++|+++|+.|+++.+.... +..+....|....... ....+.+|+++||+.+.+.
T Consensus 146 l~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~~~~-----------------------~~~~~~~I~v~T~G~l~r~ 199 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIRFEN-----------------------KTSNKTILKYMTDGMLLRE 199 (773)
T ss_dssp EESCHHHHHHHHHHHHHHT---TCCBTTTEEEEETTEE-----------------------ECCTTCSEEEEEHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHh---CCchhheecceecccc-----------------------ccCCCCCEEEECHHHHHHH
Confidence 9999999999988776543 2222222221100000 0123468999999999987
Q ss_pred hhcCCCcCCCCccEEEEehhhH-hhhHh-hhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCC
Q 012434 187 INATRGFTLEHLCYLVVDETDR-LLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (464)
Q Consensus 187 l~~~~~~~~~~~~~iIvDE~H~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
+... ..+.++++||+||+|. .++.. ....+..+....
T Consensus 200 l~~~--~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~--------------------------------------- 238 (773)
T 2xau_A 200 AMED--HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR--------------------------------------- 238 (773)
T ss_dssp HHHS--TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---------------------------------------
T ss_pred HhhC--ccccCCCEEEecCccccccchHHHHHHHHHHHHhC---------------------------------------
Confidence 7653 4578899999999996 44422 223333333221
Q ss_pred CceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHH----HHHHHHhhCCCeEEEEec
Q 012434 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY----LVALLQSLGEEKCIVFTS 340 (464)
Q Consensus 265 ~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~lVf~~ 340 (464)
+..+.+++|||+. ...+.......+. +...... ..+..++........... +..+.....++++||||+
T Consensus 239 ~~~~iIl~SAT~~--~~~l~~~~~~~~v-i~v~gr~----~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~ 311 (773)
T 2xau_A 239 PDLKIIIMSATLD--AEKFQRYFNDAPL-LAVPGRT----YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLT 311 (773)
T ss_dssp TTCEEEEEESCSC--CHHHHHHTTSCCE-EECCCCC----CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECS
T ss_pred CCceEEEEecccc--HHHHHHHhcCCCc-ccccCcc----cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 2338899999984 2333332222232 2222211 122333333333332222 222333346789999999
Q ss_pred ChhhHHHHHHHHhhc--------CccceeEeeccCcccHHHHHHHHHHHh-----cCCeeEEEEcccccccCCCCCCCeE
Q 012434 341 SVESTHRLCTLLNHF--------GELRIKIKEYSGLQRQSVRSKTLKAFR-----EGKIQVLVSSDAMTRGMDVEGVNNV 407 (464)
Q Consensus 341 s~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~~iLi~t~~~~~Gidip~~~~v 407 (464)
++++++.+++.|.+. ...++.+..+||+|+..+|..+++.|. .|+.+|||||+++++|+|+|++++|
T Consensus 312 ~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~V 391 (773)
T 2xau_A 312 GEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYV 391 (773)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEE
Confidence 999999999999751 224588999999999999999999999 9999999999999999999999999
Q ss_pred EEecC------------------CCCcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012434 408 VNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 408 i~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
|.++. |.|..+|+||+||+||. +.|.|+.+++..+.
T Consensus 392 Id~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 392 VDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99877 88999999999999999 79999999987765
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.8e-36 Score=292.84 Aligned_cols=267 Identities=15% Similarity=0.153 Sum_probs=179.2
Q ss_pred CCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHH
Q 012434 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144 (464)
Q Consensus 65 ~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 144 (464)
.+..++++++++|||+|||+++++++++.+..+ +.+++|++||++|+.|+++.+..+ + +....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~---~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~~~----- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR---RLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQAF----- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTTS----C--EEEESSCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc---CCeEEEEcchHHHHHHHHHHHhcC----C--eEEecccc-----
Confidence 345689999999999999999999999877653 458999999999999999988744 2 22111100
Q ss_pred HHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcC-------CCcCCCCccEEEEehhhHhhhHhhhhh
Q 012434 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-------RGFTLEHLCYLVVDETDRLLREAYQAW 217 (464)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~-------~~~~~~~~~~iIvDE~H~~~~~~~~~~ 217 (464)
-.++||+.+.+.+... ....+.+++++|+||+|++ +..+...
T Consensus 70 ------------------------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~ 118 (440)
T 1yks_A 70 ------------------------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAA 118 (440)
T ss_dssp ------------------------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHH
T ss_pred ------------------------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHH
Confidence 0255655443222111 1134678999999999998 3333322
Q ss_pred HHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecC
Q 012434 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (464)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 297 (464)
...+...... ...+.+++|||+++......... .+.....
T Consensus 119 ~~~~~~~~~~-------------------------------------~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~~- 158 (440)
T 1yks_A 119 RGWAAHRARA-------------------------------------NESATILMTATPPGTSDEFPHSN--GEIEDVQ- 158 (440)
T ss_dssp HHHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCCCS--SCEEEEE-
T ss_pred HHHHHHHhcc-------------------------------------CCceEEEEeCCCCchhhhhhhcC--CCeeEee-
Confidence 2222222110 23489999999977655443321 1111000
Q ss_pred CccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHH
Q 012434 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377 (464)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~ 377 (464)
...+.......+ ..+.. .++++||||++++.++.+++.|++.+ +.+..+||+ +|.++
T Consensus 159 --------------~~~~~~~~~~~~-~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~---~~v~~lhg~----~R~~~ 215 (440)
T 1yks_A 159 --------------TDIPSEPWNTGH-DWILA-DKRPTAWFLPSIRAANVMAASLRKAG---KSVVVLNRK----TFERE 215 (440)
T ss_dssp --------------CCCCSSCCSSSC-HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTT---CCEEECCSS----SCC--
T ss_pred --------------eccChHHHHHHH-HHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcC---CCEEEecch----hHHHH
Confidence 000111101111 12222 36799999999999999999999876 889999993 57789
Q ss_pred HHHHhcCCeeEEEEcccccccCCCCCCCeEEE-------------------ecCCCCcchhhhhhhhhhcC-CCCccEEE
Q 012434 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------YDKPAYIKTYIHRAGRTARA-GQLGRCFT 437 (464)
Q Consensus 378 ~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~-------------------~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~ 437 (464)
++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|+||+||+||. |+.|.|++
T Consensus 216 ~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~ 294 (440)
T 1yks_A 216 YPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYY 294 (440)
T ss_dssp ------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred HhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEE
Confidence 9999999999999999999999999 999986 78899999999999999997 68999999
Q ss_pred Eee
Q 012434 438 LLH 440 (464)
Q Consensus 438 ~~~ 440 (464)
|+.
T Consensus 295 l~~ 297 (440)
T 1yks_A 295 YSE 297 (440)
T ss_dssp ECS
T ss_pred Eec
Confidence 973
No 46
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.9e-35 Score=296.87 Aligned_cols=319 Identities=17% Similarity=0.150 Sum_probs=188.6
Q ss_pred ccchhhHHhHHhhhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHHHhh-----ccCCccEEEEcccHHHHHHHH-HHHH
Q 012434 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVK-DVFA 122 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~-~~~li~~~tG~GKT~~~~~~~l~~~~~~-----~~~~~~~lil~P~~~L~~q~~-~~~~ 122 (464)
.|+++|.+++..+++.+..+ +++++++|||+|||++++..+...+..+ .....++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 79999999999887655555 5689999999999999665444443332 014568999999999999998 7777
Q ss_pred HhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcC---CCcCCCCcc
Q 012434 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT---RGFTLEHLC 199 (464)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~---~~~~~~~~~ 199 (464)
.+. ..+..+.++. ...+.+|+|+||++|.+..... ..+....++
T Consensus 258 ~~~----~~~~~~~~~~-----------------------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~ 304 (590)
T 3h1t_A 258 PFG----DARHKIEGGK-----------------------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFD 304 (590)
T ss_dssp TTC----SSEEECCC-------------------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCS
T ss_pred hcc----hhhhhhhccC-----------------------------CCCCCcEEEEEhhhhccccccccccccCCCCccC
Confidence 653 3333333221 2245699999999998765321 124466789
Q ss_pred EEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecC
Q 012434 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (464)
Q Consensus 200 ~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 279 (464)
+||+||||++..... .....++..+. ..+.+++|||+...
T Consensus 305 lvIiDEaH~~~~~~~-~~~~~il~~~~---------------------------------------~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 305 LIIIDECHRGSARDN-SNWREILEYFE---------------------------------------PAFQIGMTATPLRE 344 (590)
T ss_dssp EEEESCCC----------CHHHHHHST---------------------------------------TSEEEEEESSCSCT
T ss_pred EEEEECCccccccch-HHHHHHHHhCC---------------------------------------cceEEEeccccccc
Confidence 999999999865321 22233333322 12678999998654
Q ss_pred ccchhcccccCCe------------------eeecCCccc----cC--------ccccccceeeccC-------CchHHH
Q 012434 280 PNKLAQLDLHHPL------------------FLTTGETRY----KL--------PERLESYKLICES-------KLKPLY 322 (464)
Q Consensus 280 ~~~~~~~~~~~~~------------------~~~~~~~~~----~~--------~~~~~~~~~~~~~-------~~~~~~ 322 (464)
........+..+. ......... .. ...+......... ..+...
T Consensus 345 ~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 424 (590)
T 3h1t_A 345 DNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDA 424 (590)
T ss_dssp TTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHH
T ss_pred cchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHH
Confidence 3221111111111 100000000 00 0000000000000 001111
Q ss_pred ----HHHHHHh-hCCCeEEEEecChhhHHHHHHHHhhcCc-----cceeEeeccCcccHHHHHHHHHHHhcCCee---EE
Q 012434 323 ----LVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGE-----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VL 389 (464)
Q Consensus 323 ----l~~~l~~-~~~~~~lVf~~s~~~~~~l~~~l~~~~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---iL 389 (464)
+...+.. ...+++||||+++.+|+.+++.|.+.+. .+..+..+||.++. +|++++++|++++.+ ||
T Consensus 425 i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~il 503 (590)
T 3h1t_A 425 FAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVIL 503 (590)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEE
T ss_pred HHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEE
Confidence 2222333 2457999999999999999999987531 11236778999864 799999999998766 88
Q ss_pred EEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCC--CccEEEEeeCc
Q 012434 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKD 442 (464)
Q Consensus 390 i~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~ 442 (464)
++|+++++|+|+|++++||+++++.|+..|+|++||++|.+. .+..+++++--
T Consensus 504 vtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 504 TTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp EESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred EECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 999999999999999999999999999999999999999875 44555555443
No 47
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=6.1e-35 Score=291.60 Aligned_cols=299 Identities=14% Similarity=0.120 Sum_probs=209.9
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012434 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
+++.+.+++... ...+.|.|..+ ++.+..++++++.+|||+|||++|++++++.+... +.++||++||++|+
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~----i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~---~~~vLvl~PtreLa 228 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVD----EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR---RLRTLILAPTRVVA 228 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCC----GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccC----HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC---CCeEEEEcChHHHH
Confidence 444444444432 36778888665 44445699999999999999999999999887653 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcC
Q 012434 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~ 194 (464)
.|+.+.+.. ..+. +.+.. ... ....+..+.++|.+.+.+.+... ..
T Consensus 229 ~Qi~~~l~~------~~v~-~~~~~-l~~------------------------~~tp~~~i~~~t~~~l~~~l~~~--~~ 274 (618)
T 2whx_A 229 AEMEEALRG------LPIR-YQTPA-VKS------------------------DHTGREIVDLMCHATFTTRLLSS--TR 274 (618)
T ss_dssp HHHHHHTTT------SCEE-ECCTT-SSC------------------------CCCSSSCEEEEEHHHHHHHHHHC--SS
T ss_pred HHHHHHhcC------Ccee-Eeccc-cee------------------------ccCCCceEEEEChHHHHHHHhcc--cc
Confidence 999988763 2232 11111 000 01123356678888777655442 34
Q ss_pred CCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeee
Q 012434 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 274 (464)
+.++++||+||||++ +.++...+..+...+.. +..+.+++||
T Consensus 275 l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-------------------------------------~~~q~il~SA 316 (618)
T 2whx_A 275 VPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTA 316 (618)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH-------------------------------------TSCEEEEECS
T ss_pred ccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc-------------------------------------cCccEEEEEC
Confidence 678999999999987 66666666666655421 2338999999
Q ss_pred eeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhh
Q 012434 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (464)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~ 354 (464)
|++.....+.. .++..+..... .+. . +...+...+.. .++++||||++++.++.+++.|++
T Consensus 317 T~~~~~~~~~~---~~~~~~~v~~~---~~~-----------~-~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~ 377 (618)
T 2whx_A 317 TPPGSTDPFPQ---SNSPIEDIERE---IPE-----------R-SWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRK 377 (618)
T ss_dssp SCTTCCCSSCC---CSSCEEEEECC---CCS-----------S-CCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCchhhhhhhc---cCCceeeeccc---CCH-----------H-HHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHH
Confidence 99776544333 12222211111 000 0 00011112222 367999999999999999999998
Q ss_pred cCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeE--------------------EEecCCC
Q 012434 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV--------------------VNYDKPA 414 (464)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~v--------------------i~~~~~~ 414 (464)
.+ +.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++| ++++.|.
T Consensus 378 ~g---~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~ 449 (618)
T 2whx_A 378 SG---KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPV 449 (618)
T ss_dssp TT---CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEEC
T ss_pred cC---CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccC
Confidence 76 889999985 578899999999999999999999999998 8888 6666789
Q ss_pred CcchhhhhhhhhhcCCC-CccEEEEee
Q 012434 415 YIKTYIHRAGRTARAGQ-LGRCFTLLH 440 (464)
Q Consensus 415 s~~~~~Q~~GR~~R~g~-~g~~~~~~~ 440 (464)
+..+|+||+||+||.|. .|.+++|+.
T Consensus 450 s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 450 TPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 99999999999999964 899999986
No 48
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=9.7e-35 Score=305.23 Aligned_cols=374 Identities=15% Similarity=0.142 Sum_probs=224.5
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012434 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
..|++||.+++..++... +.+++++++||+|||++++..+...+..+ ...++|||||+ .|+.||.+++.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~--~~~~LLad~tGlGKTi~Ai~~i~~l~~~g--~~~rvLIVvP~-sLl~Qw~~E~~~~f--- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRH--APRVLLADEVGLGKTIEAGMILHQQLLSG--AAERVLIIVPE-TLQHQWLVEMLRRF--- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSS--SCEEEECCCTTSCHHHHHHHHHHHHHHTS--SCCCEEEECCT-TTHHHHHHHHHHHS---
T ss_pred CCCcHHHHHHHHHHHHhc--CCCEEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEeCH-HHHHHHHHHHHHHh---
Confidence 379999999998877532 56799999999999999887776666544 34479999999 99999999997765
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012434 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
++++..+++....... .. . .......+|+|+|++.+.+.......+...++++||+||||+
T Consensus 224 ~l~v~v~~~~~~~~~~-~~-~-----------------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQ-HD-A-----------------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp CCCCEECCHHHHHHHH-HT-T-----------------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred CCCEEEEccchhhhhh-hh-c-----------------ccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh
Confidence 5666666654321111 00 0 011234689999999986543222223355799999999999
Q ss_pred hhhHhhhh-hHHHHHHhccccccccccccccccccccc---------------cchhhhc----cc--------------
Q 012434 209 LLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFG---------------SLKTIRR----CG-------------- 254 (464)
Q Consensus 209 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~----~~-------------- 254 (464)
+.+.+... .....+..+....+..+..++++...... ....+.. +.
T Consensus 285 ~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~ 364 (968)
T 3dmq_A 285 LVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNK 364 (968)
T ss_dssp CCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred hcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCC
Confidence 86543221 11112221111111111222222111111 0000000 00
Q ss_pred cccc----cCCCCC-CceeeEEeeeeeecCc-----cc----hhcccccCCeeeecCC-cccc-----------------
Q 012434 255 VERG----FKDKPY-PRLVKMVLSATLTQDP-----NK----LAQLDLHHPLFLTTGE-TRYK----------------- 302 (464)
Q Consensus 255 ~~~~----~~~~~~-~~~~~i~~sat~~~~~-----~~----~~~~~~~~~~~~~~~~-~~~~----------------- 302 (464)
.... ...... .....++......... .. ...........+.... ....
T Consensus 365 ~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~ 444 (968)
T 3dmq_A 365 LSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQY 444 (968)
T ss_dssp CCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHH
T ss_pred CCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHH
Confidence 0000 000000 0000000000000000 00 0000000000000000 0000
Q ss_pred ------------------------Ccccc----c-cceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHh
Q 012434 303 ------------------------LPERL----E-SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (464)
Q Consensus 303 ------------------------~~~~~----~-~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~ 353 (464)
.++.. . ..........|...+..++....++++||||+++..++.+++.|.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~ 524 (968)
T 3dmq_A 445 QTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLR 524 (968)
T ss_dssp HHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHH
Confidence 00000 0 000123345678888888888888999999999999999999998
Q ss_pred h-cCccceeEeeccCcccHHHHHHHHHHHhcCC--eeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCC
Q 012434 354 H-FGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (464)
Q Consensus 354 ~-~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 430 (464)
+ .+ +.+..+||+|+..+|..+++.|++|+ .+|||||+++++|+|+|++++||++++|+++..|.|++||++|.|
T Consensus 525 ~~~g---~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 525 EREG---IRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIG 601 (968)
T ss_dssp TTTC---CCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSS
T ss_pred HHcC---CcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCC
Confidence 5 34 88999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred CCccEEEE--eeCcccccchhhcc
Q 012434 431 QLGRCFTL--LHKDEKKGAIGRSL 452 (464)
Q Consensus 431 ~~g~~~~~--~~~~~~~~~~~~~~ 452 (464)
+.|.++++ +.....++.+.+.+
T Consensus 602 q~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 602 QAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp SCSCCEEEEEEETTSHHHHHHHHH
T ss_pred CCceEEEEEecCCChHHHHHHHHH
Confidence 88865554 45555555444333
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.3e-34 Score=284.38 Aligned_cols=281 Identities=18% Similarity=0.261 Sum_probs=202.3
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.++++|..+ ...+..++++++.+|||+|||.++.+++++ ++.++||++|+++|+.|+++.+.+.. +
T Consensus 217 P~~~~q~~i----~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSP----PAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSC----CCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHH----HHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 455666554 555667889999999999999998887775 24489999999999999998776553 4
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh
Q 012434 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~ 209 (464)
..+....|+.. ...+.+|+|+||++|+ .. ..+.+.++++||+||||+
T Consensus 283 ~~vg~~vG~~~----------------------------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH~- 329 (666)
T 3o8b_A 283 IDPNIRTGVRT----------------------------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECHS- 329 (666)
T ss_dssp CCCEEECSSCE----------------------------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTTC-
T ss_pred CCeeEEECcEe----------------------------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccchh-
Confidence 55666666643 1345799999999984 22 346678899999999974
Q ss_pred hhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhccccc
Q 012434 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (464)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~ 289 (464)
.+.++...+..+...+....+ ...+++|||++..... .
T Consensus 330 l~~~~~~~l~~Il~~l~~~~~------------------------------------~llil~SAT~~~~i~~------~ 367 (666)
T 3o8b_A 330 TDSTTILGIGTVLDQAETAGA------------------------------------RLVVLATATPPGSVTV------P 367 (666)
T ss_dssp CSHHHHHHHHHHHHHTTTTTC------------------------------------SEEEEEESSCTTCCCC------C
T ss_pred cCccHHHHHHHHHHhhhhcCC------------------------------------ceEEEECCCCCccccc------C
Confidence 566676667777766543221 1357779998764321 1
Q ss_pred CCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcc
Q 012434 290 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369 (464)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 369 (464)
.+........ .......+ ..... +....++++||||++++.++.+++.|++.+ +.+..+||+|
T Consensus 368 ~p~i~~v~~~---~~~~i~~~----~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g---~~v~~lHG~l 430 (666)
T 3o8b_A 368 HPNIEEVALS---NTGEIPFY----GKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSGLG---INAVAYYRGL 430 (666)
T ss_dssp CTTEEEEECB---SCSSEEET----TEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECTTS
T ss_pred CcceEEEeec---ccchhHHH----Hhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHhCC---CcEEEecCCC
Confidence 1111111000 00000000 00000 122357899999999999999999999876 8899999999
Q ss_pred cHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEE----------ec-----------CCCCcchhhhhhhhhhc
Q 012434 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----------YD-----------KPAYIKTYIHRAGRTAR 428 (464)
Q Consensus 370 ~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~----------~~-----------~~~s~~~~~Q~~GR~~R 428 (464)
+..+ |.+++.+|||||+++++|+|+| +++||+ |+ .|.+..+|+||+||+||
T Consensus 431 ~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR 502 (666)
T 3o8b_A 431 DVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502 (666)
T ss_dssp CGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS
T ss_pred CHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC
Confidence 9865 4556679999999999999997 999884 44 78899999999999999
Q ss_pred CCCCccEEEEeeCccccc
Q 012434 429 AGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 429 ~g~~g~~~~~~~~~~~~~ 446 (464)
|+.|. +.|++..+...
T Consensus 503 -g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 503 -GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp -SSCEE-EEESCCCCBCS
T ss_pred -CCCCE-EEEEecchhhc
Confidence 89999 88888777655
No 50
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=5.9e-34 Score=282.15 Aligned_cols=325 Identities=17% Similarity=0.236 Sum_probs=216.8
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012434 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
..|++||.+++..+......+.++++.++||+|||++++..+......+ ...++|||||+ .|+.||.++++++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~--~~~~~LIv~P~-~l~~qw~~e~~~~~~-- 110 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN--ELTPSLVICPL-SVLKNWEEELSKFAP-- 110 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT--CCSSEEEEECS-TTHHHHHHHHHHHCT--
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC--CCCCEEEEccH-HHHHHHHHHHHHHCC--
Confidence 3799999999877643333578899999999999999765444433322 34579999995 688999999999976
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012434 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
+.++..++|+.... .....+|+|+||+++.+... +....+++||+||||+
T Consensus 111 ~~~v~~~~g~~~~~--------------------------~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~ 160 (500)
T 1z63_A 111 HLRFAVFHEDRSKI--------------------------KLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQN 160 (500)
T ss_dssp TSCEEECSSSTTSC--------------------------CGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGG
T ss_pred CceEEEEecCchhc--------------------------cccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccc
Confidence 45677777664210 12346899999999865433 2234689999999999
Q ss_pred hhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccc-hhc--
Q 012434 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK-LAQ-- 285 (464)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~-~~~-- 285 (464)
+.+.. ......+..+. ....+++|||+..+... +..
T Consensus 161 ~kn~~--~~~~~~l~~l~---------------------------------------~~~~l~LTaTP~~n~~~el~~ll 199 (500)
T 1z63_A 161 IKNPQ--TKIFKAVKELK---------------------------------------SKYRIALTGTPIENKVDDLWSIM 199 (500)
T ss_dssp GSCTT--SHHHHHHHTSC---------------------------------------EEEEEEECSSCSTTCHHHHHHHH
T ss_pred cCCHh--HHHHHHHHhhc---------------------------------------cCcEEEEecCCCCCCHHHHHHHH
Confidence 85432 12222222221 12457777776443110 000
Q ss_pred ---------------------------------ccccCCeeeecCCcc----ccCcccccc-------------c-----
Q 012434 286 ---------------------------------LDLHHPLFLTTGETR----YKLPERLES-------------Y----- 310 (464)
Q Consensus 286 ---------------------------------~~~~~~~~~~~~~~~----~~~~~~~~~-------------~----- 310 (464)
..+..+..+...... ..++..... |
T Consensus 200 ~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~ 279 (500)
T 1z63_A 200 TFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVE 279 (500)
T ss_dssp HHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHH
Confidence 000011111000000 000000000 0
Q ss_pred --------------------------------------eeeccCCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHH
Q 012434 311 --------------------------------------KLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCT 350 (464)
Q Consensus 311 --------------------------------------~~~~~~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~ 350 (464)
........|...+.+++... .+.++||||++...+..+++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~ 359 (500)
T 1z63_A 280 NLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRN 359 (500)
T ss_dssp HHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHH
Confidence 00112244566666666654 57799999999999999999
Q ss_pred HHhhc-CccceeEeeccCcccHHHHHHHHHHHhcC-Cee-EEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhh
Q 012434 351 LLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (464)
Q Consensus 351 ~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~ 427 (464)
.|.+. + ..+..+||+++..+|.+++++|+++ +.+ +|++|.++++|+|+|.+++||++++|+|+..+.|++||++
T Consensus 360 ~l~~~~~---~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~ 436 (500)
T 1z63_A 360 IIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVY 436 (500)
T ss_dssp HHHHHHT---CCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTT
T ss_pred HHHHhhC---CCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHH
Confidence 99874 5 7888999999999999999999988 455 7999999999999999999999999999999999999999
Q ss_pred cCCCCccE--EEEeeCcccccchhhcc
Q 012434 428 RAGQLGRC--FTLLHKDEKKGAIGRSL 452 (464)
Q Consensus 428 R~g~~g~~--~~~~~~~~~~~~~~~~~ 452 (464)
|.|+.+.+ +.++..+..++.+...+
T Consensus 437 R~Gq~~~v~v~~lv~~~tiee~i~~~~ 463 (500)
T 1z63_A 437 RIGQTRNVIVHKLISVGTLEEKIDQLL 463 (500)
T ss_dssp TTTTTSCEEEEEEEETTSHHHHTHHHH
T ss_pred HcCCCCeeEEEEEEeCCCHHHHHHHHH
Confidence 99987765 55667776666554333
No 51
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.6e-34 Score=290.17 Aligned_cols=297 Identities=14% Similarity=0.173 Sum_probs=198.7
Q ss_pred HHHHCCCC-----ccchhhH-----HhHHhhh--CCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012434 42 ALQNMGIS-----SLFPVQV-----AVWQETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 42 ~~~~~~~~-----~l~~~Q~-----~~~~~i~--~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
.+..+||. .|+++|. ++++.++ ..+..++++++++|||+|||++|++++++.+... +.+++|++|
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~---~~~~lilaP 278 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK---RLRTAVLAP 278 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT---TCCEEEEES
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCcEEEEcc
Confidence 34556776 8999999 7755444 1122689999999999999999999999876653 458999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhc
Q 012434 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (464)
Q Consensus 110 ~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~ 189 (464)
|++|+.|+++.+..+ ++. ...+... . ....+.-+-+.+...+.+.+..
T Consensus 279 Tr~La~Q~~~~l~~~----~i~--~~~~~l~--~------------------------v~tp~~ll~~l~~~~l~~~l~~ 326 (673)
T 2wv9_A 279 TRVVAAEMAEALRGL----PVR--YLTPAVQ--R------------------------EHSGNEIVDVMCHATLTHRLMS 326 (673)
T ss_dssp SHHHHHHHHHHTTTS----CCE--ECCC-----C------------------------CCCSCCCEEEEEHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC----Cee--eeccccc--c------------------------cCCHHHHHHHHHhhhhHHHHhc
Confidence 999999999888754 221 1110000 0 0001112333444444333332
Q ss_pred CCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceee
Q 012434 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (464)
Q Consensus 190 ~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
. ..+.++++||+||||++ +..+......+...... ...+.
T Consensus 327 ~--~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-------------------------------------~~~~v 366 (673)
T 2wv9_A 327 P--LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-------------------------------------GEAAA 366 (673)
T ss_dssp S--SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-------------------------------------TSCEE
T ss_pred c--cccccceEEEEeCCccc-CccHHHHHHHHHHhccc-------------------------------------cCCcE
Confidence 1 45778999999999988 22222222222222110 22389
Q ss_pred EEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHH
Q 012434 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (464)
Q Consensus 270 i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (464)
+++|||+.......... ..++...... .........+ ..+.. .++++||||++++.++.++
T Consensus 367 l~~SAT~~~~i~~~~~~--~~~i~~v~~~---------------~~~~~~~~~l-~~l~~-~~~~~lVF~~s~~~~e~la 427 (673)
T 2wv9_A 367 IFMTATPPGTSDPFPDT--NSPVHDVSSE---------------IPDRAWSSGF-EWITD-YAGKTVWFVASVKMSNEIA 427 (673)
T ss_dssp EEECSSCTTCCCSSCCC--SSCEEEEECC---------------CCSSCCSSCC-HHHHS-CCSCEEEECSSHHHHHHHH
T ss_pred EEEcCCCChhhhhhccc--CCceEEEeee---------------cCHHHHHHHH-HHHHh-CCCCEEEEECCHHHHHHHH
Confidence 99999997665443321 1111110000 0000000111 12222 4779999999999999999
Q ss_pred HHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEE--------------------
Q 012434 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------- 409 (464)
Q Consensus 350 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~-------------------- 409 (464)
+.|++.+ +.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 428 ~~L~~~g---~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll 499 (673)
T 2wv9_A 428 QCLQRAG---KRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILS 499 (673)
T ss_dssp HHHHTTT---CCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEEC
T ss_pred HHHHhCC---CeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceec
Confidence 9999875 889999994 688999999999999999999999999999 999997
Q ss_pred ecCCCCcchhhhhhhhhhcC-CCCccEEEEee
Q 012434 410 YDKPAYIKTYIHRAGRTARA-GQLGRCFTLLH 440 (464)
Q Consensus 410 ~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~ 440 (464)
++.|.+..+|+||+||+||. |+.|.|++|+.
T Consensus 500 ~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 500 VPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred ccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 45788889999999999999 78999999973
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=9.2e-34 Score=273.35 Aligned_cols=270 Identities=13% Similarity=0.099 Sum_probs=185.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHh
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (464)
++++++++|||+|||+++++++++.+... +.+++|++||++|+.|+.+.+. +..+....|.....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~---g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~~------ 66 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK---RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQSE------ 66 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcccc------
Confidence 68999999999999999999888666543 4589999999999999888775 34555444432110
Q ss_pred hccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhcccc
Q 012434 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228 (464)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~ 228 (464)
...+..+.+.|.+.+.+.+.. ...+.++++||+||+|++ ...+......+......
T Consensus 67 --------------------~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~- 122 (431)
T 2v6i_A 67 --------------------RTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM- 122 (431)
T ss_dssp ----------------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT-
T ss_pred --------------------CCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC-
Confidence 012235667788877665554 245778999999999987 43333333333322211
Q ss_pred ccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccc
Q 012434 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308 (464)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (464)
+..+.+++|||+.+....+... ..+... ....
T Consensus 123 ------------------------------------~~~~~l~~SAT~~~~~~~~~~~--~~~i~~-~~~~--------- 154 (431)
T 2v6i_A 123 ------------------------------------GDAGAIFMTATPPGTTEAFPPS--NSPIID-EETR--------- 154 (431)
T ss_dssp ------------------------------------TSCEEEEEESSCTTCCCSSCCC--SSCCEE-EECC---------
T ss_pred ------------------------------------CCCcEEEEeCCCCcchhhhcCC--CCceee-cccc---------
Confidence 2348999999997654433221 111111 0000
Q ss_pred cceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeE
Q 012434 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388 (464)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~i 388 (464)
.+ ..+...+...+.. .++++||||++++.++.+++.|++.+ +.+..+||+ +|.++++.|++|+.+|
T Consensus 155 -----~~-~~~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~---~~v~~lhg~----~r~~~~~~f~~g~~~v 220 (431)
T 2v6i_A 155 -----IP-DKAWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAG---KKVLYLNRK----TFESEYPKCKSEKWDF 220 (431)
T ss_dssp -----CC-SSCCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTT---CCEEEESTT----THHHHTTHHHHSCCSE
T ss_pred -----CC-HHHHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcC---CeEEEeCCc----cHHHHHHhhcCCCCeE
Confidence 00 0000111222333 36689999999999999999999875 889999997 4778999999999999
Q ss_pred EEEcccccccCCCCCCCe-----------------EEEecCCCCcchhhhhhhhhhcCCCCccEEEEee
Q 012434 389 LVSSDAMTRGMDVEGVNN-----------------VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440 (464)
Q Consensus 389 Li~t~~~~~Gidip~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 440 (464)
||||+++++|+|+| +.+ ||.++.|.+..+|+||+||+||.|..+.+++++.
T Consensus 221 LVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 221 VITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999 555 5667888899999999999999985554555554
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.6e-34 Score=281.01 Aligned_cols=269 Identities=16% Similarity=0.208 Sum_probs=188.0
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHH
Q 012434 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 146 (464)
..++++++.+|||+|||++|++++++.+... +.++||++|+++|+.|+++.+.. ..+....+.....
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~---~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~~---- 85 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ---RLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQRE---- 85 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHHT---TCCEEEEECSHHHHHHHHHHTTT------SCEEECC----------
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEECchHHHHHHHHHHhcC------ceEeEEecccccC----
Confidence 3578999999999999999999999877643 45899999999999999988862 2222222111100
Q ss_pred HhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh-----hhHhhhhhHHHH
Q 012434 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-----LREAYQAWLPTV 221 (464)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~-----~~~~~~~~~~~~ 221 (464)
...+..+.++|.+.+.+.+... ..+.++++||+||||++ ...++... .
T Consensus 86 ----------------------~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~~---~ 138 (459)
T 2z83_A 86 ----------------------HQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIAT---K 138 (459)
T ss_dssp ------------------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHHH---H
T ss_pred ----------------------CCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHHH---H
Confidence 0122356778888776655542 45778999999999973 22222111 1
Q ss_pred HHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccc
Q 012434 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301 (464)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (464)
.. . +..+.+++|||++......... ..++.....
T Consensus 139 ~~---~-------------------------------------~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~---- 172 (459)
T 2z83_A 139 VE---L-------------------------------------GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQD---- 172 (459)
T ss_dssp HH---T-------------------------------------TSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC----
T ss_pred hc---c-------------------------------------CCccEEEEEcCCCcchhhhccC--CCCeEEecc----
Confidence 10 0 2348999999997665443321 222221110
Q ss_pred cCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHH
Q 012434 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (464)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 381 (464)
..+. ....... ..+.. .++++||||++++.++.+++.|++.+ +.+..+|++ +|.++++.|
T Consensus 173 ~~~~--------~~~~~~~----~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g---~~v~~lh~~----~R~~~~~~f 232 (459)
T 2z83_A 173 EIPD--------RAWSSGY----EWITE-YAGKTVWFVASVKMGNEIAMCLQRAG---KKVIQLNRK----SYDTEYPKC 232 (459)
T ss_dssp CCCS--------SCCSSCC----HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTT---CCEEEESTT----CCCCCGGGS
T ss_pred cCCc--------chhHHHH----HHHHh-cCCCEEEEeCChHHHHHHHHHHHhcC---CcEEecCHH----HHHHHHhhc
Confidence 0000 0001111 12222 36799999999999999999999876 888999985 567889999
Q ss_pred hcCCeeEEEEcccccccCCCCCCCeEEE--------------------ecCCCCcchhhhhhhhhhcCCC-CccEEEEee
Q 012434 382 REGKIQVLVSSDAMTRGMDVEGVNNVVN--------------------YDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLH 440 (464)
Q Consensus 382 ~~~~~~iLi~t~~~~~Gidip~~~~vi~--------------------~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~ 440 (464)
++|+.+|||||+++++|+|+|+ ++||. ++.|.|..+|+||+||+||.|+ .|.+++|+.
T Consensus 233 ~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~ 311 (459)
T 2z83_A 233 KNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGG 311 (459)
T ss_dssp SSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEc
Confidence 9999999999999999999999 99998 5689999999999999999997 999999998
Q ss_pred Cc
Q 012434 441 KD 442 (464)
Q Consensus 441 ~~ 442 (464)
..
T Consensus 312 ~~ 313 (459)
T 2z83_A 312 AT 313 (459)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 54
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.7e-31 Score=264.88 Aligned_cols=371 Identities=18% Similarity=0.137 Sum_probs=221.9
Q ss_pred ccchhhHHhHHhhhCCC-----CCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc---CCccEEEEcccHHHHHHHHHHH
Q 012434 50 SLFPVQVAVWQETIGPG-----LFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVKDVF 121 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~-----~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~---~~~~~lil~P~~~L~~q~~~~~ 121 (464)
.|++||.+++..++... ..+..+|+..+||+|||++++..+...+..... ...++|||+|+ .|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 79999999988875422 345779999999999999977766655544321 23469999997 7889999999
Q ss_pred HHhccccCceEEEeecCCchhH--HHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCcc
Q 012434 122 AAIAPAVGLSVGLAVGQSSIAD--EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (464)
Q Consensus 122 ~~~~~~~~~~v~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~ 199 (464)
.++++. .+.+..++++..... ....+..... .....+|+|+||+.+...... +....++
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~vvi~ty~~l~~~~~~---l~~~~~~ 194 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQG---------------MRIPTPILIISYETFRLHAEV---LHKGKVG 194 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCS---------------SCCSCCEEEEEHHHHHHHTTT---TTTSCCC
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcC---------------CCCCCcEEEeeHHHHHhhHHH---hhcCCcc
Confidence 999765 456666666543221 1111111000 012368999999999765432 3345789
Q ss_pred EEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccc---------------hhhhc-c----------
Q 012434 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL---------------KTIRR-C---------- 253 (464)
Q Consensus 200 ~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~-~---------- 253 (464)
+||+||||++.+.... ....+..+.. ..++..+++++...+.++ ..+.. +
T Consensus 195 ~vI~DEaH~ikn~~~~--~~~al~~l~~--~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~ 270 (644)
T 1z3i_X 195 LVICDEGHRLKNSDNQ--TYLALNSMNA--QRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDA 270 (644)
T ss_dssp EEEETTGGGCCTTCHH--HHHHHHHHCC--SEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHST
T ss_pred EEEEECceecCChhhH--HHHHHHhccc--CcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCc
Confidence 9999999998543211 1122222211 111222222222111110 00000 0
Q ss_pred -----------------------ccc---cccCCCCCCce--eeEEeeeeeecCccchhcccc-----------------
Q 012434 254 -----------------------GVE---RGFKDKPYPRL--VKMVLSATLTQDPNKLAQLDL----------------- 288 (464)
Q Consensus 254 -----------------------~~~---~~~~~~~~~~~--~~i~~sat~~~~~~~~~~~~~----------------- 288 (464)
... ........|.. ..+...-|... ........
T Consensus 271 ~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q--~~lY~~~~~~~~~~~~~~~g~~~~~ 348 (644)
T 1z3i_X 271 DASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQ--KELYKLFLKQAKPVESLQTGKISVS 348 (644)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHH--HHHHHHHHHHHCGGGSSCTTCCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHH--HHHHHHHHHHHHHHHHHhcCccchh
Confidence 000 00000111111 11221111110 00000000
Q ss_pred ------------cCCeeeec----CCcc-----ccCccccccceeeccCCchHHHHHHHHHh---hCCCeEEEEecChhh
Q 012434 289 ------------HHPLFLTT----GETR-----YKLPERLESYKLICESKLKPLYLVALLQS---LGEEKCIVFTSSVES 344 (464)
Q Consensus 289 ------------~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~lVf~~s~~~ 344 (464)
.+|..+.. .... ...+..............|...+..++.. ..+.++|||+++...
T Consensus 349 ~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~ 428 (644)
T 1z3i_X 349 SLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQT 428 (644)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHH
Confidence 00000000 0000 00000000000111224455566665554 357899999999999
Q ss_pred HHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCe---eEEEEcccccccCCCCCCCeEEEecCCCCcchhhh
Q 012434 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421 (464)
Q Consensus 345 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q 421 (464)
++.+.+.|...+ +.+..+||+++..+|.+++++|++++. .+|++|.++++|+|++.+++||++++++|+..+.|
T Consensus 429 ~~~l~~~l~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Q 505 (644)
T 1z3i_X 429 LDLFEKLCRNRR---YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQ 505 (644)
T ss_dssp HHHHHHHHHHHT---CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHH
T ss_pred HHHHHHHHHHCC---CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHH
Confidence 999999998877 889999999999999999999998865 48999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCcc--EEEEeeCcccccchh
Q 012434 422 RAGRTARAGQLGR--CFTLLHKDEKKGAIG 449 (464)
Q Consensus 422 ~~GR~~R~g~~g~--~~~~~~~~~~~~~~~ 449 (464)
++||++|.|+.+. ++.++..+..++.+.
T Consensus 506 a~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~ 535 (644)
T 1z3i_X 506 AMARVWRDGQKKTCYIYRLLSTGTIEEKIL 535 (644)
T ss_dssp HHTTSSSTTCCSCEEEEEEEETTSHHHHHH
T ss_pred HHHhhhhcCCCCceEEEEEEECCCHHHHHH
Confidence 9999999997765 455677776666554
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.3e-31 Score=275.81 Aligned_cols=378 Identities=19% Similarity=0.170 Sum_probs=228.2
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012434 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
..|++||.+++..+......+.++|+..+||+|||++++..+...+.... ...++||||| ..++.||.+++.++++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-~~~~~LIV~P-~sll~qW~~E~~~~~p-- 310 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-QNGPHIIVVP-LSTMPAWLDTFEKWAP-- 310 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-CCSCEEEECC-TTTHHHHHHHHHHHST--
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-CCCCEEEEEC-chHHHHHHHHHHHHCC--
Confidence 37999999999877755567899999999999999997765555444332 3447999999 5788999999999986
Q ss_pred CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012434 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
+.++..++|................. .........++|+|+||+.+.+.... +....+++||+||||+
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~---------~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~ 378 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNP---------RAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHR 378 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC--------------CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccc---------cccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhh
Confidence 57888888887655544332211100 00011224578999999999775443 2223589999999999
Q ss_pred hhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhcccc---------------------------------
Q 012434 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV--------------------------------- 255 (464)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 255 (464)
+-+.. ......+..+.. ..++..+++++...+..+-.+...-.
T Consensus 379 lkn~~--s~~~~~l~~l~~--~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~ 454 (800)
T 3mwy_W 379 LKNAE--SSLYESLNSFKV--ANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPF 454 (800)
T ss_dssp GCCSS--SHHHHHHTTSEE--EEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGG
T ss_pred hcCch--hHHHHHHHHhhh--ccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHH
Confidence 84321 222222222211 11111122222111111100000000
Q ss_pred -cc---ccCCCCCCceeeEEeeeeeecCccchhcccccCC-eeeecCCccc--c-------------Cccc--------c
Q 012434 256 -ER---GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRY--K-------------LPER--------L 307 (464)
Q Consensus 256 -~~---~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~-~~~~~~~~~~--~-------------~~~~--------~ 307 (464)
.+ .......++.........+.+.-.......+... .......... . .+.. .
T Consensus 455 ~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~ 534 (800)
T 3mwy_W 455 ILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVL 534 (800)
T ss_dssp EEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHC
T ss_pred HhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHH
Confidence 00 0000001111111111111000000000000000 0000000000 0 0000 0
Q ss_pred -----------ccceeeccCCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHH
Q 012434 308 -----------ESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (464)
Q Consensus 308 -----------~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r 374 (464)
...........|...+..++... .+.++|||+.....+..+.++|...+ +.+..+||+++..+|
T Consensus 535 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~eR 611 (800)
T 3mwy_W 535 QKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKG---INFQRLDGTVPSAQR 611 (800)
T ss_dssp CCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHT---CCCEEESTTSCHHHH
T ss_pred HhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHH
Confidence 00000112345666777777765 46799999999999999999998876 889999999999999
Q ss_pred HHHHHHHhcCCe---eEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccE--EEEeeCcccccchh
Q 012434 375 SKTLKAFREGKI---QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKDEKKGAIG 449 (464)
Q Consensus 375 ~~~~~~f~~~~~---~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~~~~~~ 449 (464)
.++++.|+.++. .+|++|.++++|+|++.+++||++++++|+..+.|++||++|.|+...+ +.++..+..++.+.
T Consensus 612 ~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~ 691 (800)
T 3mwy_W 612 RISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVL 691 (800)
T ss_dssp HHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHH
T ss_pred HHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHH
Confidence 999999998654 4899999999999999999999999999999999999999999976655 55677777776554
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.98 E-value=1.7e-31 Score=267.35 Aligned_cols=270 Identities=16% Similarity=0.142 Sum_probs=189.3
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHH
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 147 (464)
.+++++++||||+|||.. ++..+... .+.+|++|+++|+.|+++.++.. |+++..+.|+......
T Consensus 154 ~rk~vlv~apTGSGKT~~----al~~l~~~----~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~--- 218 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYH----AIQKYFSA----KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ--- 218 (677)
T ss_dssp CCEEEEEECCTTSSHHHH----HHHHHHHS----SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS---
T ss_pred CCCEEEEEcCCCCCHHHH----HHHHHHhc----CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec---
Confidence 578999999999999984 33444433 25699999999999999998876 7889999888653100
Q ss_pred hhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccc
Q 012434 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (464)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~ 227 (464)
. -....+++++|++.+. ....++++|+||||++.+.+++..+..++..+..
T Consensus 219 ---T-----------------pGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~ 269 (677)
T 3rc3_A 219 ---P-----------------NGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA 269 (677)
T ss_dssp ---T-----------------TCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE
T ss_pred ---C-----------------CCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCc
Confidence 0 0012578888875541 2356799999999999888888777766655432
Q ss_pred cccccccccccccccccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCcccc
Q 012434 228 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307 (464)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (464)
...+.+++|||.. ........ ......+..... ..+...
T Consensus 270 -------------------------------------~~i~il~~SAT~~-~i~~l~~~-~~~~~~v~~~~r--~~~l~~ 308 (677)
T 3rc3_A 270 -------------------------------------EEVHLCGEPAAID-LVMELMYT-TGEEVEVRDYKR--LTPISV 308 (677)
T ss_dssp -------------------------------------EEEEEEECGGGHH-HHHHHHHH-HTCCEEEEECCC--SSCEEE
T ss_pred -------------------------------------cceEEEeccchHH-HHHHHHHh-cCCceEEEEeee--cchHHH
Confidence 2337788888842 11111111 111111111000 000000
Q ss_pred ccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhc--CC
Q 012434 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GK 385 (464)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~ 385 (464)
..... ..+... ....+|||.+++.++.+++.|.+.+ +.+..+||+|+..+|.++++.|++ |+
T Consensus 309 -----~~~~l-------~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g---~~v~~lHG~L~~~~R~~~~~~F~~~~g~ 372 (677)
T 3rc3_A 309 -----LDHAL-------ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRG---LESAVIYGSLPPGTKLAQAKKFNDPNDP 372 (677)
T ss_dssp -----CSSCC-------CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHCTTSS
T ss_pred -----HHHHH-------HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcC---CCeeeeeccCCHHHHHHHHHHHHccCCC
Confidence 00000 011112 2345788999999999999999865 889999999999999999999998 88
Q ss_pred eeEEEEcccccccCCCCCCCeEEEecC--------------CCCcchhhhhhhhhhcCCCC---ccEEEEe
Q 012434 386 IQVLVSSDAMTRGMDVEGVNNVVNYDK--------------PAYIKTYIHRAGRTARAGQL---GRCFTLL 439 (464)
Q Consensus 386 ~~iLi~t~~~~~Gidip~~~~vi~~~~--------------~~s~~~~~Q~~GR~~R~g~~---g~~~~~~ 439 (464)
.+|||||+++++|+|+ ++++||+++. |.+..+|+||+||+||.|+. |.|+.+.
T Consensus 373 ~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 373 CKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp CCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS
T ss_pred eEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe
Confidence 9999999999999999 8999999998 77899999999999999965 4444443
No 57
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=8.5e-31 Score=233.69 Aligned_cols=213 Identities=28% Similarity=0.415 Sum_probs=178.2
Q ss_pred CCccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHh
Q 012434 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (464)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~ 96 (464)
.|....+|++. +|++.+.+.++++||..|+++|.++++.++. ++++++.+|||+|||++|+++++..+..
T Consensus 24 ~p~~~~~f~~~------~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 24 CPKPVLNFYEA------NFPANVMDVIARQNFTEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp CCCCCSSTTTT------TCCHHHHHHHHTTTCCSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCccCCHhhc------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 34445555554 3999999999999999999999999998875 8999999999999999999999988875
Q ss_pred hc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcC
Q 012434 97 RA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (464)
Q Consensus 97 ~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (464)
.. ..++++||++|+++|+.|+.+.++.++...++.+..++|+......... +.++
T Consensus 94 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~ 152 (242)
T 3fe2_A 94 QPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD---------------------LERG 152 (242)
T ss_dssp SCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH---------------------HHHC
T ss_pred ccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---------------------hcCC
Confidence 32 2466899999999999999999999988889999999998876554332 3456
Q ss_pred CcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhc
Q 012434 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (464)
Q Consensus 173 ~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (464)
++|+|+||+++.+.+.... ..+.+++++|+||||++.+.++...+..++..+..
T Consensus 153 ~~I~v~Tp~~l~~~l~~~~-~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~------------------------- 206 (242)
T 3fe2_A 153 VEICIATPGRLIDFLECGK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP------------------------- 206 (242)
T ss_dssp CSEEEECHHHHHHHHHHTS-CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCS-------------------------
T ss_pred CCEEEECHHHHHHHHHcCC-CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCc-------------------------
Confidence 7999999999999887644 66889999999999999998888888888876542
Q ss_pred cccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCc
Q 012434 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (464)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 299 (464)
..+.+++|||+++.........+.++..+..+..
T Consensus 207 -------------~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 207 -------------DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp -------------SCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred -------------cceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 3389999999988888888888888888776543
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=233.25 Aligned_cols=219 Identities=32% Similarity=0.465 Sum_probs=178.9
Q ss_pred cCCCCCccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHH
Q 012434 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ 92 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~ 92 (464)
++.........-...+|+++ +|++.+.+.++++||..|+++|.++++.++. ++++++.+|||+|||+++++++++
T Consensus 29 ~~~~~~~~~~~~~~~~f~~l-~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~ 103 (249)
T 3ber_A 29 PTEASQPIVEEEETKTFKDL-GVTDVLCEACDQLGWTKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILN 103 (249)
T ss_dssp -CBCCCCCHHHHHHCCTGGG-TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccCCcCcccccCCHHHc-CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHH
Confidence 34444443333344456666 4999999999999999999999999998876 899999999999999999999998
Q ss_pred HHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcC
Q 012434 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (464)
Q Consensus 93 ~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (464)
.+.... .+.++||++|+++|+.|+++.+++++...++.+..++|+....... ..+..+
T Consensus 104 ~l~~~~-~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~~~~~ 161 (249)
T 3ber_A 104 ALLETP-QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQS---------------------LALAKK 161 (249)
T ss_dssp HHHHSC-CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHH---------------------HHHHTC
T ss_pred HHhcCC-CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHH---------------------HHhcCC
Confidence 887653 4568999999999999999999999888889999999987654432 223456
Q ss_pred CcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhc
Q 012434 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (464)
Q Consensus 173 ~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (464)
++|+|+||+++.+.+.....+.+.+++++|+||||++.+.++...+..++..++.
T Consensus 162 ~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~------------------------- 216 (249)
T 3ber_A 162 PHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR------------------------- 216 (249)
T ss_dssp CSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS-------------------------
T ss_pred CCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC-------------------------
Confidence 8999999999999887755567889999999999999998888888888765542
Q ss_pred cccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeec
Q 012434 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (464)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 296 (464)
..+.+++|||++.........++.+|..+..
T Consensus 217 -------------~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 217 -------------DRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp -------------SSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred -------------CCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 2388999999998888888888888876643
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=4.7e-31 Score=274.97 Aligned_cols=332 Identities=17% Similarity=0.175 Sum_probs=209.0
Q ss_pred CHHHHHHHHHCC-------CCccchhhHHhHHhhhCCCC----------CCCCEEEECCCCchhHHHhHHHHHHHHHhhc
Q 012434 36 DPRLKVALQNMG-------ISSLFPVQVAVWQETIGPGL----------FERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (464)
Q Consensus 36 ~~~i~~~~~~~~-------~~~l~~~Q~~~~~~i~~~~~----------~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~ 98 (464)
++.++..+..+- -..||++|.+++..++..+. .+++++++++||+|||+++ ++++..+...
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~- 327 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL- 327 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-
Confidence 455666666642 23599999999998876332 2368999999999999997 4455444332
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-hcCCcEEE
Q 012434 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILV 177 (464)
Q Consensus 99 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiI 177 (464)
....++|||||+++|+.|+.+.+..+... .+.++.+.. .+...+ ..+.+|+|
T Consensus 328 ~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~---------------------~l~~~L~~~~~~IiV 380 (1038)
T 2w00_A 328 DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTA---------------------GLKRNLDKDDNKIIV 380 (1038)
T ss_dssp TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCH---------------------HHHHHHHCSSCCEEE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHH---------------------HHHHHhcCCCCCEEE
Confidence 23458999999999999999999987642 112222221 122223 24579999
Q ss_pred eCchHHHHhhhcCCCc-CCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccc
Q 012434 178 ATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (464)
Q Consensus 178 ~T~~~l~~~l~~~~~~-~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
+||++|...+...... .+..+.+||+||||++....+ ...+...+
T Consensus 381 tTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~---~~~I~~~~------------------------------- 426 (1038)
T 2w00_A 381 TTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEA---QKNLKKKF------------------------------- 426 (1038)
T ss_dssp EEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHH---HHHHHHHC-------------------------------
T ss_pred EEHHHHHHHHhcccchhccccccEEEEEccchhcchHH---HHHHHHhC-------------------------------
Confidence 9999999877653212 355788999999999865433 23333332
Q ss_pred cccCCCCCCceeeEEeeeeeecCccc----hhc-----------------ccccCCeeeecCC--cccc---Cc---c--
Q 012434 257 RGFKDKPYPRLVKMVLSATLTQDPNK----LAQ-----------------LDLHHPLFLTTGE--TRYK---LP---E-- 305 (464)
Q Consensus 257 ~~~~~~~~~~~~~i~~sat~~~~~~~----~~~-----------------~~~~~~~~~~~~~--~~~~---~~---~-- 305 (464)
+..+.+++||||...... ... .+...|..+.... .... .. .
T Consensus 427 --------p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~ 498 (1038)
T 2w00_A 427 --------KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKL 498 (1038)
T ss_dssp --------SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHH
T ss_pred --------CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHH
Confidence 233788999998653220 110 0111111110000 0000 00 0
Q ss_pred -ccccceeeccCCchHHHHH-HHHHhh-----------CCCeEEEEecChhhHHHHHHHHhhcCc---------cceeE-
Q 012434 306 -RLESYKLICESKLKPLYLV-ALLQSL-----------GEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKI- 362 (464)
Q Consensus 306 -~~~~~~~~~~~~~~~~~l~-~~l~~~-----------~~~~~lVf~~s~~~~~~l~~~l~~~~~---------~~~~~- 362 (464)
.+....... ...+...+. .++... .+.+++|||+|+.+|..+++.|.+.+. .++++
T Consensus 499 ~~i~~~~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~a 577 (1038)
T 2w00_A 499 SAAENQQAFL-HPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIA 577 (1038)
T ss_dssp HHTCSTTTTT-CHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEE
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEE
Confidence 000000001 111222222 222211 245899999999999999999987541 12344
Q ss_pred eeccCc----------c----------cH-----------------------------HHHHHHHHHHhcCCeeEEEEcc
Q 012434 363 KEYSGL----------Q----------RQ-----------------------------SVRSKTLKAFREGKIQVLVSSD 393 (464)
Q Consensus 363 ~~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~~~~~iLi~t~ 393 (464)
.++|++ + +. .+|.+++++|++|+.+|||+|+
T Consensus 578 vv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd 657 (1038)
T 2w00_A 578 TIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVG 657 (1038)
T ss_dssp EECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESS
T ss_pred EEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcc
Confidence 345542 2 11 1478899999999999999999
Q ss_pred cccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCC----ccEEEEee
Q 012434 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL----GRCFTLLH 440 (464)
Q Consensus 394 ~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~----g~~~~~~~ 440 (464)
++.+|+|+|.+ +++.++.|.+...|+|++||++|.++. |.++.|.+
T Consensus 658 ~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 658 MFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred hHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999999 667888999999999999999998754 55555553
No 60
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.8e-30 Score=232.59 Aligned_cols=219 Identities=32% Similarity=0.507 Sum_probs=170.2
Q ss_pred ccCCCCccCCCCCccccccccCCCCCC-CCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHH
Q 012434 6 KKSMPVLPWMRSPVDVSLFEDCPLDHL-PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84 (464)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~ 84 (464)
...++.+|.... ..|+...|..+ +.+++.+.+.++++||..|+++|.++++.++. ++++++++|||+|||+
T Consensus 35 ~~~~~~~p~~~~----~~~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~ 106 (262)
T 3ly5_A 35 ESEVPSLPLGLT----GAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTL 106 (262)
T ss_dssp -----------C----CBSGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHH
T ss_pred cccCCCCccccc----cccccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCcEEEEccCCCCchH
Confidence 344556663322 23455555555 23899999999999999999999999998876 7899999999999999
Q ss_pred HhHHHHHHHHHhhc---cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCC
Q 012434 85 SYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161 (464)
Q Consensus 85 ~~~~~~l~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 161 (464)
+|++++++.+.... ..+.++||++|+++|+.|+++.+++++...+..+..+.|+.......
T Consensus 107 ~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------- 170 (262)
T 3ly5_A 107 AFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEA---------------- 170 (262)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHH----------------
T ss_pred HHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHH----------------
Confidence 99999999887621 23567999999999999999999999988889999999987655442
Q ss_pred chhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccc
Q 012434 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241 (464)
Q Consensus 162 ~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (464)
..+..+++|+|+||+++.+.+.....+.+.++++||+||||++.+.++...+..++..++.
T Consensus 171 -----~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~-------------- 231 (262)
T 3ly5_A 171 -----QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT-------------- 231 (262)
T ss_dssp -----HHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCS--------------
T ss_pred -----HHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCC--------------
Confidence 2234567999999999999887766567889999999999999999999998888877653
Q ss_pred cccccchhhhccccccccCCCCCCceeeEEeeeeeecCccchhcccccCC
Q 012434 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291 (464)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~ 291 (464)
..+.+++|||++.....+....+.++
T Consensus 232 ------------------------~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 232 ------------------------RRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp ------------------------SSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred ------------------------CCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 23889999999988888777666544
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=7e-30 Score=227.10 Aligned_cols=199 Identities=29% Similarity=0.452 Sum_probs=166.8
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc---cCCccEEEEcccH
Q 012434 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTR 111 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~---~~~~~~lil~P~~ 111 (464)
+++.+.+.++++||..|+++|.++++.++. ++++++.+|||+|||+++++++++.+.... ..+.++||++|++
T Consensus 32 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~ 107 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTR 107 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCH
Confidence 999999999999999999999999988876 899999999999999999999998876521 2456899999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCC
Q 012434 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191 (464)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~ 191 (464)
+|+.|+.+.++.++...++.+..++|+......... ..+++|+|+||+++.+.+....
T Consensus 108 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~iiv~Tp~~l~~~l~~~~ 165 (236)
T 2pl3_A 108 ELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER----------------------INNINILVCTPGRLLQHMDETV 165 (236)
T ss_dssp HHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH----------------------HTTCSEEEECHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh----------------------CCCCCEEEECHHHHHHHHHhcC
Confidence 999999999999988778999999998765544222 2457999999999999887655
Q ss_pred CcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEE
Q 012434 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (464)
Q Consensus 192 ~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (464)
.+.+.+++++|+||||++.+.++...+..++..++. ..+.++
T Consensus 166 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~l~ 207 (236)
T 2pl3_A 166 SFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK--------------------------------------KRQTLL 207 (236)
T ss_dssp SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT--------------------------------------TSEEEE
T ss_pred CcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC--------------------------------------CCeEEE
Confidence 566788999999999999988888888888776542 237899
Q ss_pred eeeeeecCccchhcccccCCeeeecC
Q 012434 272 LSATLTQDPNKLAQLDLHHPLFLTTG 297 (464)
Q Consensus 272 ~sat~~~~~~~~~~~~~~~~~~~~~~ 297 (464)
+|||++..........+.+|..+...
T Consensus 208 ~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 208 FSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp EESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred EEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 99999888888888888888776543
No 62
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=5.6e-30 Score=226.56 Aligned_cols=201 Identities=22% Similarity=0.341 Sum_probs=165.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE
Q 012434 28 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (464)
Q Consensus 28 ~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil 107 (464)
+|+++ +|++.+.+.++++||..|+++|.++++.++. ++++++.+|||+|||++|+++++..+.... .+.++||+
T Consensus 25 ~f~~l-~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~lil 98 (230)
T 2oxc_A 25 DFESL-LLSRPVLEGLRAAGFERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLEN-LSTQILIL 98 (230)
T ss_dssp CGGGG-TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTS-CSCCEEEE
T ss_pred CHhhc-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcC-CCceEEEE
Confidence 34445 3999999999999999999999999998876 899999999999999999999998876542 45689999
Q ss_pred cccHHHHHHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHh
Q 012434 108 LPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (464)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~ 186 (464)
+|+++|+.|+.+.++++.... ++++..++|+........ ...+++|+|+||+++.+.
T Consensus 99 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------------------~~~~~~Iiv~Tp~~l~~~ 156 (230)
T 2oxc_A 99 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT----------------------RLKKCHIAVGSPGRIKQL 156 (230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHH----------------------HTTSCSEEEECHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHH----------------------hccCCCEEEECHHHHHHH
Confidence 999999999999999987665 788999999877554422 224579999999999998
Q ss_pred hhcCCCcCCCCccEEEEehhhHhhhHh-hhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCC
Q 012434 187 INATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (464)
Q Consensus 187 l~~~~~~~~~~~~~iIvDE~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
+.... +.+.+++++|+||||++.+.+ +...+..++..++.
T Consensus 157 ~~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~-------------------------------------- 197 (230)
T 2oxc_A 157 IELDY-LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA-------------------------------------- 197 (230)
T ss_dssp HHTTS-SCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS--------------------------------------
T ss_pred HhcCC-cccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC--------------------------------------
Confidence 87643 667889999999999998876 88888888776542
Q ss_pred ceeeEEeeeeeecCccchhcccccCCeeee
Q 012434 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (464)
Q Consensus 266 ~~~~i~~sat~~~~~~~~~~~~~~~~~~~~ 295 (464)
..+.+++|||++.........++.+|..+.
T Consensus 198 ~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 198 SKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp SCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred CCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 237899999998777777777777776654
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1.2e-29 Score=220.77 Aligned_cols=195 Identities=26% Similarity=0.471 Sum_probs=164.0
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012434 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
|++.+.+.++++||.+|+++|.++++.++. ++++++.+|||+|||++++++++..+... ..+.+++|++|+++|+
T Consensus 10 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~~~~~lil~Pt~~L~ 84 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLK-KDNIQAMVIVPTRELA 84 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTT-SCSCCEEEECSCHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhccc-CCCeeEEEEeCcHHHH
Confidence 999999999999999999999999998876 79999999999999999999999877543 2456899999999999
Q ss_pred HHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCc
Q 012434 115 LQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (464)
Q Consensus 115 ~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~ 193 (464)
.|+.+.++.+.... ++.+..++|+........ .+..+++|+|+||+++.+.+.+.. .
T Consensus 85 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~-~ 142 (206)
T 1vec_A 85 LQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---------------------RLDDTVHVVIATPGRILDLIKKGV-A 142 (206)
T ss_dssp HHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---------------------HTTSCCSEEEECHHHHHHHHHTTC-S
T ss_pred HHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---------------------hcCCCCCEEEeCHHHHHHHHHcCC-c
Confidence 99999999998776 788999999877654432 234567999999999998887643 5
Q ss_pred CCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEee
Q 012434 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (464)
Q Consensus 194 ~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 273 (464)
.+.+++++|+||||++.+.++...+..+...++. ..+.+++|
T Consensus 143 ~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~--------------------------------------~~~~l~~S 184 (206)
T 1vec_A 143 KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK--------------------------------------NRQILLYS 184 (206)
T ss_dssp CCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT--------------------------------------TCEEEEEE
T ss_pred CcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCc--------------------------------------cceEEEEE
Confidence 6788999999999999888888888888766542 23889999
Q ss_pred eeeecCccchhcccccCCeee
Q 012434 274 ATLTQDPNKLAQLDLHHPLFL 294 (464)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~ 294 (464)
||++.........++.+|..+
T Consensus 185 AT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 185 ATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp SCCCHHHHHHHHHHCSSCEEE
T ss_pred eeCCHHHHHHHHHHcCCCeEe
Confidence 999888877777777777654
No 64
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=4.4e-29 Score=219.50 Aligned_cols=203 Identities=23% Similarity=0.356 Sum_probs=165.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEE
Q 012434 27 CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 106 (464)
Q Consensus 27 ~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~li 106 (464)
..|+++ +|++.+.+.++++||..|+++|.++++.+++ ++++++.+|||+|||++++++++..+... ..+.++||
T Consensus 14 ~~f~~~-~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~-~~~~~~li 87 (220)
T 1t6n_A 14 SGFRDF-LLKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQVSVLV 87 (220)
T ss_dssp CCSTTS-CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCC-TTCCCEEE
T ss_pred CCHhhc-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhcc-CCCEEEEE
Confidence 345555 4999999999999999999999999998886 78999999999999999999999877543 23458999
Q ss_pred EcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHH
Q 012434 107 VLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 185 (464)
Q Consensus 107 l~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~ 185 (464)
++|+++|+.|+.+.++++.... ++++..++|+.........+. ...++|+|+||+++.+
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--------------------~~~~~i~v~T~~~l~~ 147 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVVGTPGRILA 147 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH--------------------HSCCSEEEECHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh--------------------cCCCCEEEeCHHHHHH
Confidence 9999999999999999998766 789999999877655432221 2346999999999999
Q ss_pred hhhcCCCcCCCCccEEEEehhhHhhh-HhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCC
Q 012434 186 HINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (464)
Q Consensus 186 ~l~~~~~~~~~~~~~iIvDE~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
.+.... +.+.+++++|+||||++.+ .++...+..++.....
T Consensus 148 ~~~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~------------------------------------- 189 (220)
T 1t6n_A 148 LARNKS-LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH------------------------------------- 189 (220)
T ss_dssp HHHTTS-SCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS-------------------------------------
T ss_pred HHHhCC-CCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC-------------------------------------
Confidence 887643 6688999999999999986 5677777777655432
Q ss_pred CceeeEEeeeeeecCccchhcccccCCeee
Q 012434 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294 (464)
Q Consensus 265 ~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 294 (464)
..+.+++|||++.........++.+|..+
T Consensus 190 -~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 190 -EKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp -SSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred -cCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 33889999999988888888888887655
No 65
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=233.06 Aligned_cols=204 Identities=21% Similarity=0.302 Sum_probs=169.3
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE
Q 012434 28 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (464)
Q Consensus 28 ~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil 107 (464)
.|+++ +|++.+.+.+.++||..|+++|.++++.++.. .++++++++|||+|||++|++++++.+.... .++++||+
T Consensus 93 ~f~~l-~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~-~~~~~lil 168 (300)
T 3fmo_B 93 SFEEL-RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-KYPQCLCL 168 (300)
T ss_dssp CSGGG-TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-CSCCEEEE
T ss_pred CHhhc-CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhccC-CCceEEEE
Confidence 34555 49999999999999999999999999988751 1389999999999999999999999887643 45689999
Q ss_pred cccHHHHHHHHHHHHHhcccc-CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHh
Q 012434 108 LPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (464)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~ 186 (464)
+||++|+.|+.+.++.++... ++.+....|+...... ...+++|+|+||+++.++
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~IlV~TP~~l~~~ 224 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGTPGTVLDW 224 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEECHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh------------------------hcCCCCEEEECHHHHHHH
Confidence 999999999999999998764 6788888887654322 124569999999999999
Q ss_pred hhcCCCcCCCCccEEEEehhhHhhh-HhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCC
Q 012434 187 INATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (464)
Q Consensus 187 l~~~~~~~~~~~~~iIvDE~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
+.+...+.+.+++++|+||||++.+ .++...+..+...++.
T Consensus 225 l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~-------------------------------------- 266 (300)
T 3fmo_B 225 CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR-------------------------------------- 266 (300)
T ss_dssp HTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCT--------------------------------------
T ss_pred HHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCC--------------------------------------
Confidence 9775657788999999999999987 6788877777765542
Q ss_pred ceeeEEeeeeeecCccchhcccccCCeeeecC
Q 012434 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (464)
Q Consensus 266 ~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 297 (464)
..|.+++|||++.....+...++.+|..+...
T Consensus 267 ~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 267 NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 33899999999999999999999988877643
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=1.7e-29 Score=222.94 Aligned_cols=198 Identities=24% Similarity=0.422 Sum_probs=160.4
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012434 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
|++.+.+.++++||..|+++|.++++.+++ ++++++.+|||+|||+++++++++.+.... .+.++||++|+++|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~-~~~~~lil~Pt~~L~ 95 (224)
T 1qde_A 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSV-KAPQALMLAPTRELA 95 (224)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTC-CSCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccC-CCceEEEEECCHHHH
Confidence 999999999999999999999999998876 789999999999999999999998876542 456899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcC
Q 012434 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~ 194 (464)
.|+.+.++.++...++.+..++|+......... ..+++|+|+||+++.+.+.... ..
T Consensus 96 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~iiv~Tp~~l~~~~~~~~-~~ 152 (224)
T 1qde_A 96 LQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG----------------------LRDAQIVVGTPGRVFDNIQRRR-FR 152 (224)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECC--------------------------------CTTCSEEEECHHHHHHHHHTTS-SC
T ss_pred HHHHHHHHHHhcccCceEEEEeCCcchHHHHhc----------------------CCCCCEEEECHHHHHHHHHhCC-cc
Confidence 999999999988888999999988765443211 1237999999999998887643 66
Q ss_pred CCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEEeee
Q 012434 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 274 (464)
+.+++++|+||||++.+.++...+..++..++. ..+.+++||
T Consensus 153 ~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~--------------------------------------~~~~i~lSA 194 (224)
T 1qde_A 153 TDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP--------------------------------------TTQVVLLSA 194 (224)
T ss_dssp CTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT--------------------------------------TCEEEEEES
T ss_pred hhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCc--------------------------------------cCeEEEEEe
Confidence 788999999999999888888888887766542 238899999
Q ss_pred eeecCccchhcccccCCeeeecCC
Q 012434 275 TLTQDPNKLAQLDLHHPLFLTTGE 298 (464)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~ 298 (464)
|++.........++.+|..+....
T Consensus 195 T~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 195 TMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp SCCHHHHHHHHHHCSSCEEEC---
T ss_pred ecCHHHHHHHHHHCCCCEEEEecC
Confidence 998888888888888887765443
No 67
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=1.1e-29 Score=225.68 Aligned_cols=206 Identities=26% Similarity=0.417 Sum_probs=163.2
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhcc
Q 012434 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (464)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~ 99 (464)
...+|+++ +|++.+.+.++++||..|+++|.++++.++. ++++++.+|||+|||+++++++++.+... .
T Consensus 28 ~~~~f~~l------~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~-~ 96 (237)
T 3bor_A 28 IVDNFDDM------NLKESLLRGIYAYGFEKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIE-F 96 (237)
T ss_dssp CCCSGGGS------CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTT-S
T ss_pred ccCChhhc------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhc-C
Confidence 33445555 3999999999999999999999999998876 78999999999999999999999887643 2
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcC-CcEEEe
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IiI~ 178 (464)
.+.++||++|+++|+.|+.+.++.++...++.+...+|+........ .+..+ ++|+|+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~l~~~~~~Ilv~ 155 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ---------------------KLQAEAPHIVVG 155 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------------------------CCCSEEEE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHH---------------------HHhcCCCCEEEE
Confidence 45589999999999999999999998877888888888876443321 12233 799999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccc
Q 012434 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (464)
||+++.+.+.... ..+.+++++|+||||++.+.++...+..++..+..
T Consensus 156 Tp~~l~~~l~~~~-~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------------------------------- 203 (237)
T 3bor_A 156 TPGRVFDMLNRRY-LSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT------------------------------- 203 (237)
T ss_dssp CHHHHHHHHHTTS-SCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCT-------------------------------
T ss_pred CHHHHHHHHHhCC-cCcccCcEEEECCchHhhccCcHHHHHHHHHhCCC-------------------------------
Confidence 9999999887643 56788999999999999988888888887766532
Q ss_pred cCCCCCCceeeEEeeeeeecCccchhcccccCCeeeec
Q 012434 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (464)
Q Consensus 259 ~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 296 (464)
..+.+++|||++.........++.+|..+..
T Consensus 204 -------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 204 -------SIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp -------TCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred -------CCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 3388999999988888888888888776644
No 68
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=1.7e-28 Score=238.85 Aligned_cols=379 Identities=17% Similarity=0.142 Sum_probs=231.6
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012434 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
.|. +|++.|.-.--.+. .|+ ++.+.||.|||+++.+|++-..+. +..+.|+||+..||.|-++++..+.
T Consensus 72 lg~-r~~dvQligg~~L~----~G~--iaEM~TGEGKTLva~lp~~lnAL~----G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALH----EGK--VAEMKTGEGKTLAATMPIYLNALI----GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHH----TTC--EEECCTTSCHHHHTHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHh----CCC--hhhccCCCCccHHHHHHHHHHHhc----CCceEEEeccHHHHHhHHHHHHHHH
Confidence 454 68888865543333 244 999999999999999998755554 3369999999999999999999999
Q ss_pred cccCceEEEeecCCc-------hhH--HHHHhhcccccccc--------------------ccCCchhHHHhhhcCCcEE
Q 012434 126 PAVGLSVGLAVGQSS-------IAD--EISELIKRPKLEAG--------------------ICYDPEDVLQELQSAVDIL 176 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~-------~~~--~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~Ii 176 (464)
..+|+.+++++...+ ..+ +.....+.+.+... ...++.+... .-.++|.
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~--aY~~DIt 218 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE--AYLCDVT 218 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH--HHHSSEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH--HhcCCCE
Confidence 999999999988321 000 00000000000000 0011112111 2237999
Q ss_pred EeCchHHH-HhhhcC-----CCcCCCCccEEEEehhhHhhhH----------------hhhhhHHHHHHhccccc-----
Q 012434 177 VATPGRLM-DHINAT-----RGFTLEHLCYLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN----- 229 (464)
Q Consensus 177 I~T~~~l~-~~l~~~-----~~~~~~~~~~iIvDE~H~~~~~----------------~~~~~~~~~~~~~~~~~----- 229 (464)
.+|..-|- +.|+.. .......+.+.||||++.++=+ .+...+..+...+....
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 99987763 333221 1233567899999999976311 11111222222111100
Q ss_pred ----------------------cccccc-----------------------------------------------ccccc
Q 012434 230 ----------------------ENRFSD-----------------------------------------------ASTFL 240 (464)
Q Consensus 230 ----------------------~~~~~~-----------------------------------------------~~~~~ 240 (464)
.+-++. ++.-+
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 000000 00000
Q ss_pred ccccccchhhhccccccccCC-----CCCCceeeEEeeeeeecCccchhcccccCCeeeecCCccccCccccccceeecc
Q 012434 241 PSAFGSLKTIRRCGVERGFKD-----KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 315 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (464)
...+.+.+.+........... -.....+..+||+|.......+...+-.+.+.++... +.. ..-........
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnk--p~~-R~d~~d~vy~t 455 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHK--PMI-RKDHDDLVFRT 455 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCCSS--CCC-CEECCCEEESS
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEECCCC--Ccc-eeecCcEEEec
Confidence 000000000000000000000 0011224778999987655555444433323332211 111 11111234445
Q ss_pred CCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc
Q 012434 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (464)
Q Consensus 316 ~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~ 393 (464)
...|...+...+... .+.++||||+|++.++.+++.|.+.+ +++..+||+....++..+..+++.| .|+|||+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G---i~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG---IPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTT---CCCEEECSCHHHHHHHHHHHHHSTT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcc
Confidence 667778887777653 57899999999999999999999877 8899999997776666666666665 6999999
Q ss_pred cccccCCCC--------CCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012434 394 AMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 394 ~~~~Gidip--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
++++|+|++ +..+||.++.|.|...|.|++||+||.|.+|.+++|++.++.-
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHH
Confidence 999999998 5669999999999999999999999999999999999887743
No 69
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=222.82 Aligned_cols=196 Identities=30% Similarity=0.439 Sum_probs=159.7
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhh-----ccCCccEEEEc
Q 012434 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVL 108 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~-----~~~~~~~lil~ 108 (464)
++++.+.+.+.++||..|+++|.++++.++. ++++++.+|||+|||++|+++++..+... ...+.++||++
T Consensus 26 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~ 101 (228)
T 3iuy_A 26 QQYPDLLKSIIRVGILKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLT 101 (228)
T ss_dssp TTCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEEC
T ss_pred ccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEe
Confidence 4899999999999999999999999998876 89999999999999999999999877542 12466899999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhh
Q 012434 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (464)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~ 188 (464)
|+++|+.|+.+.++.+.. .++.+..++|+....... ..+.++++|+|+||+++.+.+.
T Consensus 102 Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~iiv~Tp~~l~~~~~ 159 (228)
T 3iuy_A 102 PTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQI---------------------EDISKGVDIIIATPGRLNDLQM 159 (228)
T ss_dssp SSHHHHHHHHHHHHHHCC-TTCCEEEECC------CH---------------------HHHHSCCSEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcc-cCceEEEEECCCChHHHH---------------------HHhcCCCCEEEECHHHHHHHHH
Confidence 999999999999999863 478888888887644332 2345668999999999999877
Q ss_pred cCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCcee
Q 012434 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (464)
Q Consensus 189 ~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
... ..+.+++++|+||||++.+.++...+..++..+.. ..+
T Consensus 160 ~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~ 200 (228)
T 3iuy_A 160 NNS-VNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP--------------------------------------DRQ 200 (228)
T ss_dssp TTC-CCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCS--------------------------------------SCE
T ss_pred cCC-cCcccceEEEEECHHHHhccchHHHHHHHHHhCCc--------------------------------------CCe
Confidence 643 66888999999999999998888888888876642 338
Q ss_pred eEEeeeeeecCccchhcccccCCeee
Q 012434 269 KMVLSATLTQDPNKLAQLDLHHPLFL 294 (464)
Q Consensus 269 ~i~~sat~~~~~~~~~~~~~~~~~~~ 294 (464)
.+++|||+++.........+.+|..+
T Consensus 201 ~l~~SAT~~~~~~~~~~~~l~~p~~i 226 (228)
T 3iuy_A 201 TVMTSATWPDTVRQLALSYLKDPMIV 226 (228)
T ss_dssp EEEEESCCCHHHHHHHHTTCSSCEEE
T ss_pred EEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 99999999888888888888877654
No 70
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=1.2e-29 Score=227.99 Aligned_cols=210 Identities=28% Similarity=0.446 Sum_probs=171.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc--------cC
Q 012434 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--------VR 100 (464)
Q Consensus 29 ~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~--------~~ 100 (464)
|+++ +|++.+.+.++++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+.... ..
T Consensus 25 f~~l-~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 25 FDEL-KLDPTIRNNILLASYQRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SGGG-SCCCSTTTTTTTTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred HhhC-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 3444 3899999999999999999999999998886 899999999999999999999998886532 23
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCc
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~ 180 (464)
++++||++|+++|+.|+.+.++.++...++.+..++|+........ .+..+++|+|+||
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---------------------EVQMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---------------------HHSSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HhCCCCCEEEECH
Confidence 4589999999999999999999998877889999999876654432 2345679999999
Q ss_pred hHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccC
Q 012434 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (464)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
+++.+.+.... ..+.+++++|+||||++.+.++...+..++..+....
T Consensus 159 ~~l~~~l~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~------------------------------- 206 (253)
T 1wrb_A 159 GRLVDFIEKNK-ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS------------------------------- 206 (253)
T ss_dssp HHHHHHHHTTS-BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC-------------------------------
T ss_pred HHHHHHHHcCC-CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC-------------------------------
Confidence 99999887654 6678899999999999999988888888887432211
Q ss_pred CCCCCceeeEEeeeeeecCccchhcccccCCeeeecCCc
Q 012434 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (464)
Q Consensus 261 ~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 299 (464)
....+.+++|||++..........+.++..+..+..
T Consensus 207 ---~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 207 ---GINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp ---GGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred ---CCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 013489999999988888888888888877765543
No 71
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=1.3e-29 Score=222.63 Aligned_cols=199 Identities=23% Similarity=0.347 Sum_probs=165.1
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012434 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
|++.+.+.++++||..|+++|.++++.+++ ++++++.+|||+|||+++++++++.+.... .+.++||++|+++|+
T Consensus 11 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~Pt~~L~ 85 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPER-AEVQAVITAPTRELA 85 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCc-CCceEEEEcCcHHHH
Confidence 999999999999999999999999998876 799999999999999999999998876542 456899999999999
Q ss_pred HHHHHHHHHhcccc----CceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcC
Q 012434 115 LQVKDVFAAIAPAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190 (464)
Q Consensus 115 ~q~~~~~~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~ 190 (464)
.|+.+.++++.... ++.+..++|+....... ..+..+++|+|+||+++.+.+...
T Consensus 86 ~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~Iiv~Tp~~l~~~l~~~ 144 (219)
T 1q0u_A 86 TQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---------------------EKLNVQPHIVIGTPGRINDFIREQ 144 (219)
T ss_dssp HHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---------------------CCCSSCCSEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---------------------HHcCCCCCEEEeCHHHHHHHHHcC
Confidence 99999999987765 67888888887543321 112346799999999999988764
Q ss_pred CCcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeE
Q 012434 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (464)
Q Consensus 191 ~~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (464)
. ..+.+++++|+||||++.+.++...+..++..++. ..+.+
T Consensus 145 ~-~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~--------------------------------------~~~~l 185 (219)
T 1q0u_A 145 A-LDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK--------------------------------------DLQML 185 (219)
T ss_dssp C-CCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCT--------------------------------------TCEEE
T ss_pred C-CCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCc--------------------------------------ccEEE
Confidence 3 66788999999999999988888888888766532 23889
Q ss_pred EeeeeeecCccchhcccccCCeeeecCC
Q 012434 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (464)
Q Consensus 271 ~~sat~~~~~~~~~~~~~~~~~~~~~~~ 298 (464)
++|||++..........+.+|..+....
T Consensus 186 ~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 186 VFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp EEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred EEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 9999998888888888888887765443
No 72
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=225.72 Aligned_cols=220 Identities=27% Similarity=0.476 Sum_probs=171.6
Q ss_pred CCCccccccccCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 012434 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
..|....+|+.+. +++ ++++.+.+.+.++||..|+++|.++++.++. ++++++.+|||+|||++|+++++..+.
T Consensus 19 ~~p~~~~~f~~l~-~~~-~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 19 DLPDPIATFQQLD-QEY-KINSRLLQNILDAGFQMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp SCCCCCSSHHHHH-HHH-CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred CCCCcccCHHHhh-hcc-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3444455555541 111 4999999999999999999999999998876 899999999999999999999999887
Q ss_pred hhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcE
Q 012434 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175 (464)
Q Consensus 96 ~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 175 (464)
.....+.++||++|+++|+.|+.+.+++++...++.+..++|+........ .....+++|
T Consensus 93 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~I 152 (245)
T 3dkp_A 93 QPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG--------------------PKSSKKFDI 152 (245)
T ss_dssp SCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTS--------------------TTSCCCCCE
T ss_pred hcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhh--------------------hhhcCCCCE
Confidence 654456689999999999999999999998888888888777643221100 112356799
Q ss_pred EEeCchHHHHhhhcCC-CcCCCCccEEEEehhhHhhhH---hhhhhHHHHHHhccccccccccccccccccccccchhhh
Q 012434 176 LVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (464)
Q Consensus 176 iI~T~~~l~~~l~~~~-~~~~~~~~~iIvDE~H~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (464)
+|+||+++.+.+.... .+.+.+++++|+||||++.+. ++...+..++.....
T Consensus 153 ~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~------------------------ 208 (245)
T 3dkp_A 153 LVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS------------------------ 208 (245)
T ss_dssp EEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC------------------------
T ss_pred EEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC------------------------
Confidence 9999999999887653 456889999999999999885 455555555543322
Q ss_pred ccccccccCCCCCCceeeEEeeeeeecCccchhcccccCCeeeecCC
Q 012434 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (464)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~ 298 (464)
+..+.+++|||++.....+....+.++..+..+.
T Consensus 209 -------------~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 209 -------------HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp -------------TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred -------------CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 2348899999999888888888888888776654
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.96 E-value=9.6e-29 Score=215.33 Aligned_cols=196 Identities=33% Similarity=0.483 Sum_probs=162.7
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhh--ccCCccEEEEcccH
Q 012434 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTR 111 (464)
Q Consensus 34 ~l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~--~~~~~~~lil~P~~ 111 (464)
+|++.+.+.++++||..|+++|.++++.+++ ++++++.+|||+|||+++++++++.+... ...+.+++|++|++
T Consensus 7 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~ 82 (207)
T 2gxq_A 7 PLKPEILEALHGRGLTTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTR 82 (207)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCH
Confidence 3999999999999999999999999998876 89999999999999999999999887642 12456899999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCC
Q 012434 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191 (464)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~ 191 (464)
+|+.|+.+.++.++.. +++..++|+........ .+..+++|+|+||+++.+.+....
T Consensus 83 ~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~ 139 (207)
T 2gxq_A 83 ELALQVASELTAVAPH--LKVVAVYGGTGYGKQKE---------------------ALLRGADAVVATPGRALDYLRQGV 139 (207)
T ss_dssp HHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHH---------------------HHHHCCSEEEECHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHH---------------------HhhCCCCEEEECHHHHHHHHHcCC
Confidence 9999999999998764 67888888876544322 234567999999999999887643
Q ss_pred CcCCCCccEEEEehhhHhhhHhhhhhHHHHHHhccccccccccccccccccccccchhhhccccccccCCCCCCceeeEE
Q 012434 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (464)
Q Consensus 192 ~~~~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (464)
+.+.+++++|+||||++.+.++...+..++...+. ..+.++
T Consensus 140 -~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~i~ 180 (207)
T 2gxq_A 140 -LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP--------------------------------------SRQTLL 180 (207)
T ss_dssp -SCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCT--------------------------------------TSEEEE
T ss_pred -cchhhceEEEEEChhHhhccchHHHHHHHHHhCCc--------------------------------------cCeEEE
Confidence 66888999999999999888888888887765432 238899
Q ss_pred eeeeeecCccchhcccccCCeeee
Q 012434 272 LSATLTQDPNKLAQLDLHHPLFLT 295 (464)
Q Consensus 272 ~sat~~~~~~~~~~~~~~~~~~~~ 295 (464)
+|||+++........++.+|..+.
T Consensus 181 ~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 181 FSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp ECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred EEEecCHHHHHHHHHHcCCCeEEE
Confidence 999998888888887888887664
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=6e-25 Score=221.86 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=108.2
Q ss_pred chHHHHHHHHHh--hCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccc
Q 012434 318 LKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (464)
Q Consensus 318 ~~~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~ 395 (464)
.+...+...+.. ..+.++||||++...++.+++.|.+.+ +.+..+||+++..+|.++++.|+.|+.+|||||+++
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l 499 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHG---IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 499 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC---CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChh
Confidence 344444444433 257799999999999999999999877 788999999999999999999999999999999999
Q ss_pred cccCCCCCCCeEEEecC-----CCCcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012434 396 TRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 396 ~~Gidip~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
++|+|+|++++||+++. |.|..+|+||+||+||.+ .|.+++|++..+.
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCH
Confidence 99999999999999997 889999999999999994 8999999877654
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.3e-24 Score=215.67 Aligned_cols=131 Identities=25% Similarity=0.296 Sum_probs=108.5
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012434 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
+|+ .|++.|..++..++. |+ ++.+.||+|||+++.+|++..... +..++|+|||+.||.|.++++..+.
T Consensus 76 lG~-~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~----G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALT----GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTT----CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 798 999999999888775 66 999999999999999998654443 3369999999999999999999999
Q ss_pred cccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHH-HHhhhcCC-----CcCCC---
Q 012434 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLE--- 196 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l-~~~l~~~~-----~~~~~--- 196 (464)
..+|+++++++|+.+...+ ....+++|+|+||..| .+++...- .+.+.
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r-----------------------~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~ 201 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAER-----------------------RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDH 201 (997)
T ss_dssp HTTTCCEEECCTTCCHHHH-----------------------HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSS
T ss_pred HhcCCeEEEEeCCCCHHHH-----------------------HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCC
Confidence 9999999999998764332 1223579999999999 67666532 24566
Q ss_pred CccEEEEehhhHhh
Q 012434 197 HLCYLVVDETDRLL 210 (464)
Q Consensus 197 ~~~~iIvDE~H~~~ 210 (464)
++.++|+||+|.++
T Consensus 202 ~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 202 PLHYAIIDEVDSIL 215 (997)
T ss_dssp SSCEEEETTHHHHT
T ss_pred CcceEEEechHHHH
Confidence 89999999999985
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=1.3e-23 Score=212.13 Aligned_cols=122 Identities=25% Similarity=0.343 Sum_probs=108.2
Q ss_pred hHHHHHHHHHh-h-CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccccc
Q 012434 319 KPLYLVALLQS-L-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (464)
Q Consensus 319 ~~~~l~~~l~~-~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~ 396 (464)
+...+...+.. . .+.++||||++...++.+++.|++.+ +.+..+||+++..+|.++++.|+.|+.+|||||+.++
T Consensus 430 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~ 506 (661)
T 2d7d_A 430 QIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIG---IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 506 (661)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCS
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcC---CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhh
Confidence 33444444433 2 56799999999999999999999876 7889999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEecC-----CCCcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012434 397 RGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 397 ~Gidip~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
+|+|+|++++||+++. |.|..+|+||+||+||. ..|.+++|++..+.
T Consensus 507 ~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 507 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITK 558 (661)
T ss_dssp TTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCH
T ss_pred CCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCH
Confidence 9999999999999997 88999999999999998 78999999987654
No 77
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.92 E-value=4.3e-25 Score=218.64 Aligned_cols=375 Identities=16% Similarity=0.143 Sum_probs=185.0
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 012434 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
.|| +||++|.+++..+.+.+..++++++.+|||+|||++++++++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHHHHhc-
Confidence 467 89999999988887777778999999999999999999988642 348999999999999999888774
Q ss_pred cccCceEEEeecCCchhHHHHHhhc-----------cccc---------------cccccCCchhHHHhhhcCCcEEEeC
Q 012434 126 PAVGLSVGLAVGQSSIADEISELIK-----------RPKL---------------EAGICYDPEDVLQELQSAVDILVAT 179 (464)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~-----------~~~~---------------~~~~~~~~~~~~~~~~~~~~IiI~T 179 (464)
++++..+.|............. .... ......++-.........++|+|+|
T Consensus 75 ---~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n 151 (540)
T 2vl7_A 75 ---GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMT 151 (540)
T ss_dssp ---TCCEEEC---------------------------------------------------------CTTGGGCSEEEEE
T ss_pred ---CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEC
Confidence 5666666654421110000000 0000 0000111112223345668999999
Q ss_pred chHHHHhhhcCC-C-----cCCCCccEEEEehhhHhhhH-----------hhhhhHHHHH--------------------
Q 012434 180 PGRLMDHINATR-G-----FTLEHLCYLVVDETDRLLRE-----------AYQAWLPTVL-------------------- 222 (464)
Q Consensus 180 ~~~l~~~l~~~~-~-----~~~~~~~~iIvDE~H~~~~~-----------~~~~~~~~~~-------------------- 222 (464)
|+.+.+...... . -.+.+.+++|+||||++.+. .+......+.
T Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l 231 (540)
T 2vl7_A 152 YPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLL 231 (540)
T ss_dssp THHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred hHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 999976443211 0 02346789999999998321 1111111111
Q ss_pred -Hhcccccc-cccccccc---ccccccccchhhh--------------------c--------cccccccCCCCC-----
Q 012434 223 -QLTRSDNE-NRFSDAST---FLPSAFGSLKTIR--------------------R--------CGVERGFKDKPY----- 264 (464)
Q Consensus 223 -~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~--------------------~--------~~~~~~~~~~~~----- 264 (464)
..+..... +....... .+......+.... . +.........|.
T Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~ 311 (540)
T 2vl7_A 232 IDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQL 311 (540)
T ss_dssp HHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHH
T ss_pred HHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHH
Confidence 00000000 00000000 0000000000000 0 000000000010
Q ss_pred ------CceeeEEeeeeeecC----ccchhcccccCCeeeecCCccccCccccccceeeccCCch---HHHHHHHHH---
Q 012434 265 ------PRLVKMVLSATLTQD----PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK---PLYLVALLQ--- 328 (464)
Q Consensus 265 ------~~~~~i~~sat~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~--- 328 (464)
.....|++|||+.+. ..... .+..+. +.........+ ..+...+ ...+...+.
T Consensus 312 l~~~~~~~~~~IltSATL~p~~~~~~~f~~--~~~~~~----g~~~~~~~~~l-----~s~f~~r~~~~~~~~~~l~~~~ 380 (540)
T 2vl7_A 312 IEDALNVKTFKVLMSGTLPESLTLTNSYKI--VVNESY----GRGEYYYCPNV-----TSELRKRNSNIPIYSILLKRIY 380 (540)
T ss_dssp HHHHTCCSSCEEEEESSCCTTCCCTTEEEE--ECCCC-----CCCEEEECTTC-----CCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccCCeEEEcccCCCCcccchhcCC--chhhee----cCCcceecccc-----CCCcccccCHHHHHHHHHHHHH
Confidence 011248999999772 11100 011110 00000000000 0010110 022222222
Q ss_pred hhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEE--EcccccccCCCCC---
Q 012434 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV--SSDAMTRGMDVEG--- 403 (464)
Q Consensus 329 ~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi--~t~~~~~Gidip~--- 403 (464)
...++++|||++|...++.+++.++. .. ...++.. .+|.++++.|+.+. .||+ +|..+++|||+|+
T Consensus 381 ~~~~g~~lvff~S~~~~~~v~~~l~~-----~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~ 451 (540)
T 2vl7_A 381 ENSSKSVLVFFPSYEMLESVRIHLSG-----IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKEN 451 (540)
T ss_dssp HTCSSEEEEEESCHHHHHHHHTTCTT-----SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------
T ss_pred HhCCCCEEEEeCCHHHHHHHHHHhcc-----Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcc
Confidence 23577999999999999999988864 22 3345543 45789999998865 6776 7899999999997
Q ss_pred -CCeEEEecCCCC-c-----------------------------chhhhhhhhhhcCCCCccEEEEeeCcccccchhhcc
Q 012434 404 -VNNVVNYDKPAY-I-----------------------------KTYIHRAGRTARAGQLGRCFTLLHKDEKKGAIGRSL 452 (464)
Q Consensus 404 -~~~vi~~~~~~s-~-----------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 452 (464)
+++||+++.|.. + ..+.|.+||+.|...+--+++++|++-....++..+
T Consensus 452 ~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R~~~~~yg~~l 531 (540)
T 2vl7_A 452 LFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSRYREYFADLGI 531 (540)
T ss_dssp CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGGGGGGTTTTTC
T ss_pred cccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccccCcchhhccc
Confidence 789999998732 1 235699999999866666666776666555555444
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=1.1e-24 Score=181.13 Aligned_cols=139 Identities=29% Similarity=0.495 Sum_probs=128.9
Q ss_pred cccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcC
Q 012434 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384 (464)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 384 (464)
..+.+++..++...|...+..++....++++||||+++..++.+++.|.+.+ +.+..+||+|+..+|..+++.|++|
T Consensus 8 ~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 8 RNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG---YPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4466777777888999999999998888999999999999999999999876 8899999999999999999999999
Q ss_pred CeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012434 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 385 ~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
+.+|||+|+++++|+|+|++++||+++.|+++..|+||+||+||.|+.|.+++|+...+...
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 146 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRF 146 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHH
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765443
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=1.1e-24 Score=182.73 Aligned_cols=137 Identities=28% Similarity=0.403 Sum_probs=127.4
Q ss_pred cccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcC
Q 012434 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384 (464)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 384 (464)
..+.+++..++...|...+..+++...++++||||+++..++.+++.|...+ +.+..+||+|+..+|..+++.|++|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC---CCEEEEECCCCHHHHHHHHHHHHCC
Confidence 4566777778888999999999998888899999999999999999999876 8899999999999999999999999
Q ss_pred CeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccc
Q 012434 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEK 444 (464)
Q Consensus 385 ~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 444 (464)
+.++||||+++++|+|+|++++||+++.|+++..|+||+||+||.|+.|.+++|++..+.
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 140 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 140 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHH
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhH
Confidence 999999999999999999999999999999999999999999999999999999987643
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=3.5e-24 Score=178.64 Aligned_cols=137 Identities=28% Similarity=0.467 Sum_probs=120.8
Q ss_pred cccceeeccCCc-hHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCC
Q 012434 307 LESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385 (464)
Q Consensus 307 ~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 385 (464)
+.+++..++... |...+..+++...++++||||+++..++.+++.|++.+ +.+..+||+|+..+|..+++.|++|+
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 445555566555 99999999998888999999999999999999999876 88999999999999999999999999
Q ss_pred eeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012434 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 386 ~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
.+|||+|+++++|+|+|++++||+++.|+++..|+||+||+||.|+.|.+++++...+...
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~ 141 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 141 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHH
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHH
Confidence 9999999999999999999999999999999999999999999999999999998776544
No 81
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.91 E-value=1.4e-23 Score=208.76 Aligned_cols=384 Identities=16% Similarity=0.073 Sum_probs=216.9
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 012434 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (464)
Q Consensus 47 ~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (464)
|| ++|++|.+++..+.+.+..++++++.+|||+|||++|+++++. .+.+++|++||++|+.|+.+++..+..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 45 7999999999988877778999999999999999999999987 234899999999999999999998877
Q ss_pred ccCceEEEeecCCchhHHH-------------HHhhccccc-----------------cccccCCchhHHHhhhcCCcEE
Q 012434 127 AVGLSVGLAVGQSSIADEI-------------SELIKRPKL-----------------EAGICYDPEDVLQELQSAVDIL 176 (464)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~-------------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~Ii 176 (464)
..++++..+.|...+.... ...+..... ......++-.........++||
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIV 152 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVI 152 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEE
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEE
Confidence 7688888888754321100 000000000 0011122333345556789999
Q ss_pred EeCchHHHHhhhcCCCcCCCCccEEEEehhhHhhhHhhh------------hh------------HHHHHHhccc-c-cc
Q 012434 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ------------AW------------LPTVLQLTRS-D-NE 230 (464)
Q Consensus 177 I~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~~~~~~~------------~~------------~~~~~~~~~~-~-~~ 230 (464)
|+||..|.+...+.......+..++|+||||++.+ ... .. +..+...+.. . ..
T Consensus 153 V~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~ 231 (551)
T 3crv_A 153 ALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPD 231 (551)
T ss_dssp EEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred EeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999998765443311124677999999999876 311 10 1111111111 0 00
Q ss_pred cc---c----cccccccccc---------------------cccc----hh--------hhc------ccc--ccccCCC
Q 012434 231 NR---F----SDASTFLPSA---------------------FGSL----KT--------IRR------CGV--ERGFKDK 262 (464)
Q Consensus 231 ~~---~----~~~~~~~~~~---------------------~~~~----~~--------~~~------~~~--~~~~~~~ 262 (464)
.. . ......+... ...+ .. ... ..+ ...+. .
T Consensus 232 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~-~ 310 (551)
T 3crv_A 232 EKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLN-L 310 (551)
T ss_dssp SSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHG-G
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHH-H
Confidence 00 0 0000000000 0000 00 000 000 00111 1
Q ss_pred CCCc-eeeEEeeeeeecCccchhcccccCCeee---e-cCCccccCccccccceee-ccC--C----chHHHHHHHHH--
Q 012434 263 PYPR-LVKMVLSATLTQDPNKLAQLDLHHPLFL---T-TGETRYKLPERLESYKLI-CES--K----LKPLYLVALLQ-- 328 (464)
Q Consensus 263 ~~~~-~~~i~~sat~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~-~~~--~----~~~~~l~~~l~-- 328 (464)
.... ...|++|||+.+........++..+... . .-.+.+ .+....+... .+. . .-...+...+.
T Consensus 311 ~~~~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l 388 (551)
T 3crv_A 311 LNDNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKI 388 (551)
T ss_dssp GGCTTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHH
Confidence 1122 5789999999762222223333312210 0 011111 2222111111 010 1 11222333332
Q ss_pred -hhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEc--ccccccCCCC---
Q 012434 329 -SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS--DAMTRGMDVE--- 402 (464)
Q Consensus 329 -~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t--~~~~~Gidip--- 402 (464)
...++++|||++|....+.+++. . +..+..-..+++ +.++++.|+.++..||+++ ..+++|||+|
T Consensus 389 ~~~~~g~~lvlF~Sy~~l~~v~~~---~---~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 389 YFQAKANVLVVFPSYEIMDRVMSR---I---SLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp HHHCSSEEEEEESCHHHHHHHHTT---C---CSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETT
T ss_pred HHhCCCCEEEEecCHHHHHHHHHh---c---CCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccC
Confidence 33578999999999999988862 1 234443333444 3567888864445899998 6999999999
Q ss_pred C--CCeEEEecCCCC------------------------------cchhhhhhhhhhcCCCCccEEEEeeCcccccchhh
Q 012434 403 G--VNNVVNYDKPAY------------------------------IKTYIHRAGRTARAGQLGRCFTLLHKDEKKGAIGR 450 (464)
Q Consensus 403 ~--~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 450 (464)
+ +++||+.+.|.. ...+.|.+||+.|...+.-+++++|++-...+++.
T Consensus 460 g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~~~~~~~~ 539 (551)
T 3crv_A 460 RSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFESLYWKK 539 (551)
T ss_dssp EESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGGGSHHHHH
T ss_pred CcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehhcccchhhh
Confidence 4 788999887621 11235999999998767667777776666655544
Q ss_pred c
Q 012434 451 S 451 (464)
Q Consensus 451 ~ 451 (464)
.
T Consensus 540 ~ 540 (551)
T 3crv_A 540 N 540 (551)
T ss_dssp H
T ss_pred h
Confidence 3
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=4.5e-24 Score=179.82 Aligned_cols=139 Identities=30% Similarity=0.514 Sum_probs=122.9
Q ss_pred ccccccceeeccCCc-hHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHh
Q 012434 304 PERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382 (464)
Q Consensus 304 ~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~ 382 (464)
+..+.+++..++... |...+..++....++++||||+++..++.+++.|.+.+ +.+..+||+|+..+|..+++.|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG---HQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECSSCCHHHHHHHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHH
Confidence 345666666666655 89999999988888899999999999999999999876 88999999999999999999999
Q ss_pred cCCeeEEEEcccccccCCCCCCCeEEEecCC------CCcchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012434 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 383 ~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
+|+.++||+|+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++|+...+..
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHH
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHH
Confidence 9999999999999999999999999999999 89999999999999999999999999877644
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=9.4e-24 Score=183.23 Aligned_cols=136 Identities=32% Similarity=0.483 Sum_probs=124.6
Q ss_pred cccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCe
Q 012434 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386 (464)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 386 (464)
+.+....++...|...+..++....++++||||+++..++.+++.|.+.+ +.+..+||+|+..+|..+++.|++|+.
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~ 82 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDLSQGERERVLGAFRQGEV 82 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT---CCEEEECSSSCHHHHHHHHHHHHSSSC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 34455667788999999999998889999999999999999999999876 889999999999999999999999999
Q ss_pred eEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012434 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 387 ~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
+|||||+++++|+|+|++++||+++.|.++..|+||+||+||.|+.|.|++|++..+..
T Consensus 83 ~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~ 141 (212)
T 3eaq_A 83 RVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERR 141 (212)
T ss_dssp CEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHH
T ss_pred eEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHH
Confidence 99999999999999999999999999999999999999999999999999999887643
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.91 E-value=5.5e-24 Score=181.09 Aligned_cols=153 Identities=27% Similarity=0.371 Sum_probs=121.5
Q ss_pred ccccCCeeeecCCccccCccccccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeec
Q 012434 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (464)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~ 365 (464)
..+.+|..+...... .....+.+.+..++...|...+..++... ++++||||+++..++.+++.|+..+ +.+..+
T Consensus 10 ~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g---~~~~~l 84 (191)
T 2p6n_A 10 GVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKG---VEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHT---CCEEEE
T ss_pred cccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcC---CcEEEE
Confidence 345566655554433 33456666677777888999998888765 5689999999999999999999876 889999
Q ss_pred cCcccHHHHHHHHHHHhcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcc
Q 012434 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (464)
Q Consensus 366 ~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 443 (464)
||+|+..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++|++..+
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~ 162 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKAC 162 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTS
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998764
No 85
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=6e-24 Score=180.14 Aligned_cols=141 Identities=29% Similarity=0.493 Sum_probs=115.5
Q ss_pred CccccccceeeccCCchHHHHHHHHHhh-CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHH
Q 012434 303 LPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (464)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 381 (464)
.+..+.+.+..++...|...+.+++... .++++||||+++..++.+++.|+..+ +.+..+||+|+..+|..+++.|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT---CCEEEEC--------CHHHHHH
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC---CceEEEeCCCCHHHHHHHHHHH
Confidence 3456677777788888999999999886 57899999999999999999999876 8899999999999999999999
Q ss_pred hcCCeeEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012434 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 382 ~~~~~~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
++|+.+|||+|+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++|++..+...
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 157 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI 157 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGG
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999998776544
No 86
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=8.8e-23 Score=185.19 Aligned_cols=136 Identities=31% Similarity=0.484 Sum_probs=122.5
Q ss_pred cccceeeccCCchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCe
Q 012434 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386 (464)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 386 (464)
+.++...+....|...+..++....++++||||+++..++.+++.|.+.+ +.+..+||+|+..+|..+++.|++|+.
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g---~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT---CCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 45667778888999999999998889999999999999999999998776 889999999999999999999999999
Q ss_pred eEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCcccc
Q 012434 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKK 445 (464)
Q Consensus 387 ~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 445 (464)
+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.|++|++..+..
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~ 138 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERR 138 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHH
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHH
Confidence 99999999999999999999999999999999999999999999999999999887643
No 87
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.89 E-value=1.6e-22 Score=202.40 Aligned_cols=90 Identities=21% Similarity=0.177 Sum_probs=77.4
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
+||+.|.+++..+.+.+..++++++.+|||+|||++++++++..+... +.+++|++||++++.|+.+++..+....+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~---~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER---KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc---CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 689999999998888888899999999999999999999999887653 34899999999999999999999877667
Q ss_pred ceEEEeecCCchh
Q 012434 130 LSVGLAVGQSSIA 142 (464)
Q Consensus 130 ~~v~~~~g~~~~~ 142 (464)
+++..+.|..++.
T Consensus 80 ~~~~~l~gr~~lC 92 (620)
T 4a15_A 80 IRAIPMQGRVNMC 92 (620)
T ss_dssp CCEEECCCHHHHC
T ss_pred eEEEEEECCCccc
Confidence 8888888876543
No 88
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.80 E-value=3.2e-24 Score=179.75 Aligned_cols=136 Identities=33% Similarity=0.523 Sum_probs=122.8
Q ss_pred ccceeeccC-CchHHHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCe
Q 012434 308 ESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386 (464)
Q Consensus 308 ~~~~~~~~~-~~~~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 386 (464)
.+++..++. ..|...+..++....++++||||+++..++.+++.|+..+ +.+..+||+|+..+|..+++.|++|+.
T Consensus 5 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 5 HQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG---INNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 344444555 7788888888887778899999999999999999998776 889999999999999999999999999
Q ss_pred eEEEEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccEEEEeeCccccc
Q 012434 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEKKG 446 (464)
Q Consensus 387 ~iLi~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 446 (464)
++||+|+++++|+|+|++++||+++.|+++..|+||+||+||.|+.|.+++++...+...
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 141 (170)
Confidence 999999999999999999999999999999999999999999999999999998776544
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=171.30 Aligned_cols=146 Identities=21% Similarity=0.217 Sum_probs=104.9
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc--cCCccEEEEcccHHHHHH-HHHHHH
Q 012434 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQ-VKDVFA 122 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~--~~~~~~lil~P~~~L~~q-~~~~~~ 122 (464)
.+...|+++|.+++..++. ++++++.+|||+|||++++.+++..+.... ..+.++||++|+++|+.| +.+.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred cCCCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 3455899999999998875 789999999999999999998887776532 235589999999999999 788888
Q ss_pred HhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCC-----cCCCC
Q 012434 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-----FTLEH 197 (464)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~-----~~~~~ 197 (464)
.+... ++.+..++|+....... .....+++|+|+||+.+.+.+..... ..+.+
T Consensus 105 ~~~~~-~~~v~~~~g~~~~~~~~---------------------~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~ 162 (216)
T 3b6e_A 105 PFLKK-WYRVIGLSGDTQLKISF---------------------PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSD 162 (216)
T ss_dssp HHHTT-TSCEEECCC---CCCCH---------------------HHHHHHCSEEEEEHHHHHHHHHC-------CCCGGG
T ss_pred HHhcc-CceEEEEeCCcccchhH---------------------HhhccCCCEEEECHHHHHHHHhccCcccccccchhc
Confidence 87664 67888888876543221 11223569999999999988876432 45678
Q ss_pred ccEEEEehhhHhhhHhhhhh
Q 012434 198 LCYLVVDETDRLLREAYQAW 217 (464)
Q Consensus 198 ~~~iIvDE~H~~~~~~~~~~ 217 (464)
+++||+||||++.+.++...
T Consensus 163 ~~~iIiDEah~~~~~~~~~~ 182 (216)
T 3b6e_A 163 FSLIIIDECHHTNKEAVYNN 182 (216)
T ss_dssp CSEEEETTC-------CHHH
T ss_pred ccEEEEECchhhccCCcHHH
Confidence 99999999999976644433
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.81 E-value=5.1e-20 Score=167.75 Aligned_cols=128 Identities=20% Similarity=0.167 Sum_probs=99.9
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
+|+++|.+++..++. +.+.++++|||+|||++++.++...+..+ ..++||++|+++|+.||.+.+.++....+
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC---SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC---CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 799999999988776 57789999999999999988777665532 33799999999999999999999876556
Q ss_pred ceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhHh
Q 012434 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (464)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~ 209 (464)
..+..+.++..... ....+.+|+|+||+++.+... ..+.++++||+||||++
T Consensus 186 ~~~~~~~~~~~~~~------------------------~~~~~~~I~v~T~~~l~~~~~----~~~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 186 AMIKKIGGGASKDD------------------------KYKNDAPVVVGTWQTVVKQPK----EWFSQFGMMMNDECHLA 237 (282)
T ss_dssp GGEEECSTTCSSTT------------------------CCCTTCSEEEECHHHHTTSCG----GGGGGEEEEEEETGGGC
T ss_pred ceEEEEeCCCcchh------------------------hhccCCcEEEEchHHHHhhHH----HHHhhCCEEEEECCccC
Confidence 67777777654221 112456999999998754321 34567899999999998
Q ss_pred hhH
Q 012434 210 LRE 212 (464)
Q Consensus 210 ~~~ 212 (464)
.+.
T Consensus 238 ~~~ 240 (282)
T 1rif_A 238 TGK 240 (282)
T ss_dssp CHH
T ss_pred Ccc
Confidence 653
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=152.39 Aligned_cols=142 Identities=21% Similarity=0.240 Sum_probs=101.4
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc-cCCccEEEEcccHHHHHHHHHHHHHhccc
Q 012434 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (464)
-.++++|.+++..+.+ ++++++.||||+|||.++..++++...... ....+++++.|++.++.|.++.+......
T Consensus 60 ~p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 60 LPVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp SGGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 4689999999888875 899999999999999988888877665432 12347999999999999998888765432
Q ss_pred -cCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehh
Q 012434 128 -VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (464)
Q Consensus 128 -~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~ 206 (464)
.+..++........ ....+++|+|+||+++.+.+.. .++++++||+|||
T Consensus 136 ~~~~~~g~~~~~~~~--------------------------~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEa 185 (235)
T 3llm_A 136 EPGKSCGYSVRFESI--------------------------LPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEI 185 (235)
T ss_dssp CTTSSEEEEETTEEE--------------------------CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCT
T ss_pred ccCceEEEeechhhc--------------------------cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECC
Confidence 23333321111100 0013468999999999998875 3678999999999
Q ss_pred hHh-hhHhhh-hhHHHHHHh
Q 012434 207 DRL-LREAYQ-AWLPTVLQL 224 (464)
Q Consensus 207 H~~-~~~~~~-~~~~~~~~~ 224 (464)
|++ .+.++. ..++.+...
T Consensus 186 h~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 186 HERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp TSCCHHHHHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHhh
Confidence 985 566655 445555543
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.76 E-value=2.8e-18 Score=153.86 Aligned_cols=134 Identities=15% Similarity=0.218 Sum_probs=104.5
Q ss_pred cCCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhc-CccceeEeeccCcccHHHHHHHHHHHhcC-Cee-EE
Q 012434 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VL 389 (464)
Q Consensus 315 ~~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-iL 389 (464)
....|...+.+++... .+.++||||++...+..+.+.|.+. + +.+..+||+++..+|.++++.|+++ +.+ +|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L 169 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIV 169 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHC---SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHhcCCCCCCEEE
Confidence 4567888888888776 7889999999999999999999874 5 7888999999999999999999998 666 78
Q ss_pred EEcccccccCCCCCCCeEEEecCCCCcchhhhhhhhhhcCCCCccE--EEEeeCcccccchhhc
Q 012434 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKDEKKGAIGRS 451 (464)
Q Consensus 390 i~t~~~~~Gidip~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~~~~~~~~ 451 (464)
++|.++++|+|++.+++||++++|+++..+.|++||++|.|+.+.+ +.++..+..++.+...
T Consensus 170 ~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~ 233 (271)
T 1z5z_A 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQL 233 (271)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHH
T ss_pred EehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999987765 6677777777665433
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.75 E-value=4.4e-18 Score=150.08 Aligned_cols=117 Identities=28% Similarity=0.300 Sum_probs=93.0
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (464)
.|+++|.+++..+++ ++++++++|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~----~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (237)
T ss_dssp CCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHHHGGG----C
T ss_pred CcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHhC----C
Confidence 799999999888765 5679999999999999987766542 347999999999999999999884 5
Q ss_pred ce-EEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhhH
Q 012434 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (464)
Q Consensus 130 ~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~ 208 (464)
+. +..+.|+.. ...+|+|+||+.+....... ..++++||+||||+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~ 203 (237)
T 2fz4_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (237)
T ss_dssp GGGEEEESSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSC
T ss_pred CCeEEEEeCCCC------------------------------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCcc
Confidence 66 777777653 23489999999987765431 24589999999999
Q ss_pred hhhHhhh
Q 012434 209 LLREAYQ 215 (464)
Q Consensus 209 ~~~~~~~ 215 (464)
+.+..+.
T Consensus 204 l~~~~~~ 210 (237)
T 2fz4_A 204 LPAESYV 210 (237)
T ss_dssp CCTTTHH
T ss_pred CCChHHH
Confidence 8665443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.43 E-value=6.4e-07 Score=89.63 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=58.8
Q ss_pred HHHHHHHHC-CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHH--hHHHHHHHHHhhccCCccEEEEcccHHHH
Q 012434 38 RLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS--YALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (464)
Q Consensus 38 ~i~~~~~~~-~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~--~~~~~l~~~~~~~~~~~~~lil~P~~~L~ 114 (464)
.+...+... +-..-.+.|+.++..++. ++.+++.|++|+|||.+ ++++++..+.. ..+.++++++||...+
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~--~~~~~vll~APTg~AA 209 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMAD--GERCRIRLAAPTGKAA 209 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCS--SCCCCEEEEBSSHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhh--cCCCeEEEEeCChhHH
Confidence 344555543 112236889999888774 78899999999999955 33333332211 2345899999999999
Q ss_pred HHHHHHHHHhccccC
Q 012434 115 LQVKDVFAAIAPAVG 129 (464)
Q Consensus 115 ~q~~~~~~~~~~~~~ 129 (464)
.++.+.+.......+
T Consensus 210 ~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 210 ARLTESLGKALRQLP 224 (608)
T ss_dssp HHHHHHHTHHHHHSS
T ss_pred HHHHHHHHHHHhcCC
Confidence 999888876655443
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.39 E-value=8.9e-07 Score=89.64 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=53.7
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012434 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
..|++.|.+|+..++. ...-.+++||+|||||.+..-.+.+.+.. +.++|+++||..-++++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHHhc
Confidence 3689999999887764 22357999999999999866555544443 448999999999999998888765
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.23 E-value=1e-05 Score=81.32 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=54.0
Q ss_pred CCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012434 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 48 ~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
+..+++.|.+++..++. +..++++||+|+|||.+... ++..+... .+.++++++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHH-HHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 34689999999888764 56789999999999987554 33344332 3458999999999999998888764
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.16 E-value=2.8e-06 Score=82.31 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=52.2
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCC-CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHH
Q 012434 46 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (464)
Q Consensus 46 ~~~~~l~~~Q~~~~~~i~~~~~~~~-~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 121 (464)
+.|..|++.|.+++..+...+..+. .+++.|+.|+|||.+. ..++..+...+ ..++++++||...+..+.+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~--~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG--ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT--CCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC--CceEEEecCcHHHHHHHHhhh
Confidence 5678899999999887755433343 8999999999999764 34444444432 236999999988776655443
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=3.3e-05 Score=79.45 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=53.9
Q ss_pred CCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012434 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 48 ~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
+..+++.|.+|+..++. +...++.||+|+|||.+....+. .+... .+.++|+++||...+.++.+.+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~-~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVY-HLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHH-HHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHH-HHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34688999999888764 55689999999999988554333 33321 2348999999999999999988765
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.08 E-value=3.2e-05 Score=79.44 Aligned_cols=69 Identities=25% Similarity=0.233 Sum_probs=53.5
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012434 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
..+++.|.+|+..++. +...++.||+|+|||.+... ++..+... .+.++++++||...+.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHH-HHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHH-HHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4688999999888764 56689999999999987543 44444432 3458999999999999988888764
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.91 E-value=3e-05 Score=76.77 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=47.9
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHH
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 120 (464)
.+++.|.+++..+.. ++.+++.|++|+|||.+.. .++..+.. .+.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~-~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTK-AVADLAES---LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHH-HHHHHHHH---TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHH-HHHHHHHh---cCCeEEEecCcHHHHHHhHhh
Confidence 688999999887764 6789999999999998633 34444443 345799999999888766553
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.84 E-value=0.00018 Score=64.53 Aligned_cols=126 Identities=15% Similarity=0.056 Sum_probs=90.6
Q ss_pred cCCchHHHHHHHHHhh--CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEc
Q 012434 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (464)
Q Consensus 315 ~~~~~~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t 392 (464)
....|...+..++... .+.++|+|++..+...-+.+++...+ +....+.|.....+++ -.++...+.+.|
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~---~~y~RlDG~~~~~~~k-----~~~~~~~i~Llt 177 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNK---VHIKRYDGHSIKSAAA-----ANDFSCTVHLFS 177 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSS---CEEEESSSCCC------------CCSEEEEEEE
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCC---CceEeCCCCchhhhhh-----cccCCceEEEEE
Confidence 4778888888888765 46699999999999999999998765 8889999985443211 124455555556
Q ss_pred ccccccCC-----CCCCCeEEEecCCCCcch-hhhhhhhhhcCC----CCccEEEEeeCcccccch
Q 012434 393 DAMTRGMD-----VEGVNNVVNYDKPAYIKT-YIHRAGRTARAG----QLGRCFTLLHKDEKKGAI 448 (464)
Q Consensus 393 ~~~~~Gid-----ip~~~~vi~~~~~~s~~~-~~Q~~GR~~R~g----~~g~~~~~~~~~~~~~~~ 448 (464)
...+.|+| +..++.||+++..+++.. .+|.+-|+.|.| +.-.++.++..+..++..
T Consensus 178 sag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~ 243 (328)
T 3hgt_A 178 SEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCR 243 (328)
T ss_dssp SSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHH
T ss_pred CCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHH
Confidence 66666776 567899999999999987 499999988873 355778888877777643
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.44 E-value=0.00024 Score=72.15 Aligned_cols=83 Identities=22% Similarity=0.161 Sum_probs=61.7
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc-
Q 012434 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~- 127 (464)
..|++-|.+++.. .+..++|.|+.|||||.+.+--+.+.+...+....++|++++|+..+.++.+.+......
T Consensus 8 ~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 8 DSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp TTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred hcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 4689999998542 257799999999999998766666655543334458999999999999999999877432
Q ss_pred -cCceEEEeec
Q 012434 128 -VGLSVGLAVG 137 (464)
Q Consensus 128 -~~~~v~~~~g 137 (464)
.++.+..+++
T Consensus 82 ~~~~~v~Tfhs 92 (647)
T 3lfu_A 82 QGGMWVGTFHG 92 (647)
T ss_dssp CTTCEEEEHHH
T ss_pred cCCcEEEcHHH
Confidence 2455555544
No 103
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.22 E-value=0.00061 Score=69.35 Aligned_cols=83 Identities=18% Similarity=0.085 Sum_probs=62.6
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc-
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV- 128 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 128 (464)
.|++-|.+++.. .+.+++|.|+.|||||.+..--+...+...+....++|+||.|+..+.++.+.+.......
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 478899998653 2578999999999999987666666665533344589999999999999999998775432
Q ss_pred --CceEEEeecC
Q 012434 129 --GLSVGLAVGQ 138 (464)
Q Consensus 129 --~~~v~~~~g~ 138 (464)
++.+..+++-
T Consensus 76 ~~~~~v~Tfhs~ 87 (673)
T 1uaa_A 76 ARGLMISTFHTL 87 (673)
T ss_dssp TTTSEEEEHHHH
T ss_pred ccCCEEEeHHHH
Confidence 4666666653
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.19 E-value=0.00035 Score=65.85 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=33.4
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 012434 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
+-.++.|+.|+|||... .+.+.. .+.+|++||++++..+.+.+.+
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~~~-----~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRVNF-----EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHCCT-----TTCEEEESCHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHH----HHHhcc-----CCeEEEeCCHHHHHHHHHHhhh
Confidence 34688999999999863 222221 2689999999999888877753
No 105
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.10 E-value=0.0011 Score=67.81 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=62.2
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc-
Q 012434 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~- 127 (464)
..|++-|.+++.. .+.+++|.|+.|||||.+..--+...+...+....++|++|.|+..+.++.+.+......
T Consensus 10 ~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4689999998653 257899999999999998766666666543334457999999999999999888876432
Q ss_pred -cCceEEEeec
Q 012434 128 -VGLSVGLAVG 137 (464)
Q Consensus 128 -~~~~v~~~~g 137 (464)
.++.+..+++
T Consensus 84 ~~~~~v~Tfhs 94 (724)
T 1pjr_A 84 AEDVWISTFHS 94 (724)
T ss_dssp GTTSEEEEHHH
T ss_pred ccCcEEeeHHH
Confidence 2456666655
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.88 E-value=0.00048 Score=57.33 Aligned_cols=39 Identities=21% Similarity=0.057 Sum_probs=26.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~ 111 (464)
++-.++.||+|+|||..++-.+..... .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH----TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeecc
Confidence 455789999999999875443333222 234799998884
No 107
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.86 E-value=0.0024 Score=59.37 Aligned_cols=72 Identities=14% Similarity=0.025 Sum_probs=54.7
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (464)
.|.++|...+..+.. .+.+++..+-+.|||.+....++..+... .+..++++.|+...+..+.+.++.+...
T Consensus 163 ~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~~--~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHSS--SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 689999998876532 35589999999999998766665544432 3557999999999998888877776554
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.82 E-value=0.0039 Score=51.94 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=27.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~ 111 (464)
++-.++.||+|+|||..++-.+.. +. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r-~~---~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRR-AK---IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH-HH---HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH-HH---HCCCEEEEEEecc
Confidence 556788999999999875543333 32 2355899999985
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.64 E-value=0.0049 Score=51.88 Aligned_cols=40 Identities=23% Similarity=0.065 Sum_probs=26.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~ 112 (464)
|+-.++.+++|+|||..++-.+..... .+.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~----~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF----AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH----CCCEEEEEEeccC
Confidence 444568999999999875543333322 3558999999764
No 110
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.60 E-value=0.0026 Score=53.40 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=26.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~ 112 (464)
|.-.++.+++|+|||...+-.+ ..... .+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~-~r~~~---~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRL-RRGIY---AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHHHH---TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHH-HHHHH---cCCceEEEEeccC
Confidence 5556889999999997644433 33332 3457999999765
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.39 E-value=0.0018 Score=55.37 Aligned_cols=39 Identities=23% Similarity=0.170 Sum_probs=26.9
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~ 111 (464)
+.-.++.|++|+|||..++-.+.. +.. .+.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r-~~~---~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR-LEY---ADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH-HHH---TTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH-HHh---cCCEEEEEEecc
Confidence 556788999999999875543333 322 344799998865
No 112
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.39 E-value=0.01 Score=48.92 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
++.+++.||+|+|||..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCEEEECCSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6789999999999998644
No 113
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.37 E-value=0.0027 Score=63.37 Aligned_cols=73 Identities=14% Similarity=0.018 Sum_probs=55.9
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (464)
.|+++|...+..+. ..+.+++..+-|.|||......++..+... ++..++++.|+...+....+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999887652 246689999999999998765555555443 34579999999999998888888776543
No 114
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.29 E-value=0.0053 Score=50.80 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=26.7
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
++=.++.||+|+|||...+-++-.... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~----~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI----AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH----TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH----cCCeEEEEccc
Confidence 456788999999999764443333322 34589999987
No 115
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.96 E-value=0.016 Score=53.30 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=27.5
Q ss_pred cchhhHHhHHhhhCCCCCCC---CEEEECCCCchhHHHhH
Q 012434 51 LFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 51 l~~~Q~~~~~~i~~~~~~~~---~~li~~~tG~GKT~~~~ 87 (464)
++|||.+++..+...+.+++ .+++.||.|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 46888888777665544442 38999999999998654
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.96 E-value=0.0072 Score=51.39 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=27.9
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~ 112 (464)
++-.++.|++|+|||..++-.+.... ..+.+++++.|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~----~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ----IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH----TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH----HCCCeEEEEeecCC
Confidence 55568899999999987444333322 34568999998764
No 117
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.91 E-value=0.011 Score=64.16 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=54.3
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhc--cCCccEEEEcccHHHHHHHHHHHHHh
Q 012434 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 49 ~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
..+++-|.+++.. .+++++|.|+.|||||.+.+--++..+..+. ....++|++|+|+..+..+.+.+...
T Consensus 9 ~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 3689999988542 2789999999999999987666666665532 23457999999999999988888764
No 118
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.04 Score=49.75 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=19.9
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHH
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
.+.++++.||+|+|||.+.-. ++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 357899999999999987443 444443
No 119
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.70 E-value=0.072 Score=48.54 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=23.7
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
+..+++.||+|+|||..+-. +...+... +.+++++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~~---~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKKR---GYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHHT---TCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHC---CCEEEEEEH
Confidence 46899999999999986432 33333322 335666653
No 120
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.88 E-value=0.2 Score=47.69 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=24.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
...+++.||+|+|||..+-. +...+... ..+.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~-~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQN-EPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHH-CCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEeeH
Confidence 46899999999999986433 33333322 12345666654
No 121
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.61 E-value=0.14 Score=47.83 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.||+|+|||..+-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 35789999999999998643
No 122
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.32 E-value=0.37 Score=40.59 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=14.7
Q ss_pred CCEEEECCCCchhHHHh
Q 012434 70 RDLCINSPTGSGKTLSY 86 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~ 86 (464)
.++++.||+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999854
No 123
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.15 E-value=0.13 Score=52.77 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=69.7
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-ccccCCCCCCCeEE
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~~~Gidip~~~~vi 408 (464)
.+.++++.++++.-+...++.+++.. ..++.+..+||+++..++...++.+.+|+.+|+|+|.. +...+++.+++.||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 46789999999999988888877642 33588999999999999999999999999999999975 45667888898888
Q ss_pred EecCCC
Q 012434 409 NYDKPA 414 (464)
Q Consensus 409 ~~~~~~ 414 (464)
+.....
T Consensus 496 IDEaHr 501 (780)
T 1gm5_A 496 IDEQHR 501 (780)
T ss_dssp EESCCC
T ss_pred ecccch
Confidence 876553
No 124
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.07 E-value=0.28 Score=44.52 Aligned_cols=14 Identities=36% Similarity=0.321 Sum_probs=12.2
Q ss_pred CccEEEEehhhHhh
Q 012434 197 HLCYLVVDETDRLL 210 (464)
Q Consensus 197 ~~~~iIvDE~H~~~ 210 (464)
...++++||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 57899999999885
No 125
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.04 E-value=0.09 Score=52.29 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=41.3
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 012434 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (464)
Q Consensus 50 ~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~ 117 (464)
.++.-|.+++..+.... ....++.|+-|.|||.+.-+ ++..+. .+++|.+|+..-+..+
T Consensus 175 ~~T~dQ~~al~~~~~~~--~~~~vlta~RGRGKSa~lG~-~~a~~~------~~~~vtAP~~~a~~~l 233 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP--PGVAAVTAARGRGKSALAGQ-LISRIA------GRAIVTAPAKASTDVL 233 (671)
T ss_dssp SCCHHHHHHHHHHTTCC--SEEEEEEECTTSSHHHHHHH-HHHHSS------SCEEEECSSCCSCHHH
T ss_pred CCCHHHHHHHHHHHHhh--hCeEEEecCCCCCHHHHHHH-HHHHHH------hCcEEECCCHHHHHHH
Confidence 67889999988877644 23479999999999965433 333322 1478889998766543
No 126
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.85 E-value=1.1 Score=35.75 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=54.3
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeC
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T 179 (464)
..++||.++++.-+..+++.+... ++.+..++|+.+..++... .+.+. ...+|+|+|
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~------------------~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDV------------------MNEFKRGEYRYLVAT 92 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHH------------------HHHHHTTSCSEEEEC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHH------------------HHHHHcCCCeEEEEC
Confidence 447999999999999888888775 7889999998876555322 22232 347899999
Q ss_pred chHHHHhhhcCCCcCCCCccEEEEehh
Q 012434 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iIvDE~ 206 (464)
. . + ..++++.++++||.-+.
T Consensus 93 ~-~----~--~~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 93 D-V----A--ARGIDIENISLVINYDL 112 (163)
T ss_dssp G-G----G--TTTCCCSCCSEEEESSC
T ss_pred C-h----h--hcCCchhcCCEEEEeCC
Confidence 2 1 2 23477777888886543
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.43 E-value=0.19 Score=46.78 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
...+++.||+|+|||..+-
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4579999999999998643
No 128
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.42 E-value=0.19 Score=45.24 Aligned_cols=18 Identities=17% Similarity=-0.123 Sum_probs=15.0
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
...++.||.|+|||..+.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 19 ISILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999997644
No 129
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.10 E-value=0.31 Score=46.02 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=66.8
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-cc---ccCCCCCCCe
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT---RGMDVEGVNN 406 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~~---~Gidip~~~~ 406 (464)
.+.++||.+|++.-+..+++.+++....++.+..++|+.+..++....+.+..++.+|+|+|+- +. .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 5678999999999999999999886444578999999999988888889999998999999963 21 1245567888
Q ss_pred EEEecC
Q 012434 407 VVNYDK 412 (464)
Q Consensus 407 vi~~~~ 412 (464)
+|+-..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 887665
No 130
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.90 E-value=0.63 Score=44.66 Aligned_cols=75 Identities=13% Similarity=0.022 Sum_probs=50.7
Q ss_pred HHHHHHHHhhCCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccccccCC
Q 012434 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400 (464)
Q Consensus 321 ~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~~~Gid 400 (464)
..+...++. .+.++++.+.|...++.+.+.|.+.+ +.+..... .. .+..| .+.|+...+..|+-
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~---i~~~~~~~-~~---------~~~~g--~v~i~~g~L~~GF~ 435 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIK---IAPQRIMR-LD---------EASDR--GRYLMIGAAEHGFV 435 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGT---CCCEECSC-GG---------GCCTT--CEEEEESCCCSCEE
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcC---CCceecCc-hh---------hcCCC--cEEEEEcccccCcc
Confidence 344444432 35789999999999999999999876 44332221 11 11233 46666678899999
Q ss_pred CCCCCeEEEec
Q 012434 401 VEGVNNVVNYD 411 (464)
Q Consensus 401 ip~~~~vi~~~ 411 (464)
+|....+|+..
T Consensus 436 ~p~~klaVITE 446 (483)
T 3hjh_A 436 DTVRNLALICE 446 (483)
T ss_dssp ETTTTEEEEEH
T ss_pred cCCCCEEEEEc
Confidence 99888888764
No 131
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.74 E-value=1.5 Score=34.97 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=53.1
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeC
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T 179 (464)
..++||.++++.-++.+++.+... ++.+..++|+.+...+... .+... ....|+|+|
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~------------------~~~f~~g~~~vlv~T 87 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTI------------------MKEFRSGSSRILIST 87 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHH------------------HHHHHTTSCSEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHH------------------HHHHHcCCCEEEEEc
Confidence 457999999999998888888765 7889999998876554322 22222 347899999
Q ss_pred chHHHHhhhcCCCcCCCCccEEEEeh
Q 012434 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iIvDE 205 (464)
. . + ..++++.++++||.-+
T Consensus 88 ~-~----~--~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 88 D-L----L--ARGIDVQQVSLVINYD 106 (165)
T ss_dssp G-G----G--TTTCCCCSCSEEEESS
T ss_pred C-h----h--hcCCCcccCCEEEEeC
Confidence 2 1 2 2346777788887643
No 132
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.65 E-value=0.15 Score=46.36 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.++++.||+|+|||..+-
T Consensus 47 ~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 359999999999998643
No 133
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.65 E-value=1.2 Score=35.95 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=53.7
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEe
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~ 178 (464)
...++||.++++..+..+++.+... ++.+..++|+.+...+... .+.+. ...+|+|+
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~------------------~~~f~~g~~~vLva 90 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASI------------------IQRFRDGKEKVLIT 90 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHH------------------HHHHHTTSCSEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHH------------------HHHHHcCCCeEEEE
Confidence 3458999999999998888888764 7889999999876655322 22222 34789999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEe
Q 012434 179 TPGRLMDHINATRGFTLEHLCYLVVD 204 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvD 204 (464)
|. .+ ..++++..+++||.-
T Consensus 91 T~-----~~--~~Gid~~~~~~Vi~~ 109 (175)
T 2rb4_A 91 TN-----VC--ARGIDVKQVTIVVNF 109 (175)
T ss_dssp CC-----SC--CTTTCCTTEEEEEES
T ss_pred ec-----ch--hcCCCcccCCEEEEe
Confidence 92 11 235777788888853
No 134
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.47 E-value=0.086 Score=48.49 Aligned_cols=41 Identities=20% Similarity=0.039 Sum_probs=27.9
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012434 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
+..|.-+++.+|+|+|||..++..+...... +.+++++.-.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~----g~~vlyi~~E 98 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAA----GGIAAFIDAE 98 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC
Confidence 3356778999999999998755544443332 3468888643
No 135
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=92.30 E-value=0.73 Score=37.84 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=45.5
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-hcCCcEEEe
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiI~ 178 (464)
.+.++||.++++.-+..+++.+... ++.+..++|+.+...+. ...+.+ ....+|+|+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~------------------~~~~~f~~g~~~vLva 102 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDRE------------------EALHQFRSGKSPILVA 102 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------C------------------HHHHHHHHTSSSEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHH------------------HHHHHHHcCCCeEEEE
Confidence 3558999999999998888888764 78899999987654432 222222 244789999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEeh
Q 012434 179 TPGRLMDHINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvDE 205 (464)
|. .+ ..++++.++++||.-+
T Consensus 103 T~-~~------~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 103 TA-VA------ARGLDISNVKHVINFD 122 (185)
T ss_dssp EC-------------CCCSBSEEEESS
T ss_pred cC-hh------hcCCCcccCCEEEEeC
Confidence 92 22 2346677788777633
No 136
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=92.26 E-value=1.7 Score=35.12 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=54.0
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeC
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T 179 (464)
..++||.++++.-+..+++.+... ++.+..++|+.+...+... .+.+. ....|+|+|
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~------------------~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSR------------------YQQFKDFQRRILVAT 88 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHH------------------HHHHHTTSCSEEEES
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHH------------------HHHHHCCCCcEEEEC
Confidence 458999999999999888888775 7889999998776554222 22222 347899999
Q ss_pred chHHHHhhhcCCCcCCCCccEEEEehh
Q 012434 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iIvDE~ 206 (464)
. . ...++++..+++||.-+.
T Consensus 89 ~-~------~~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 89 N-L------FGRGMDIERVNIAFNYDM 108 (172)
T ss_dssp S-C------CSTTCCGGGCSEEEESSC
T ss_pred C-c------hhcCcchhhCCEEEEECC
Confidence 3 1 123467777888876443
No 137
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.19 E-value=0.079 Score=47.43 Aligned_cols=43 Identities=12% Similarity=-0.096 Sum_probs=29.6
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L 113 (464)
.| .+++.+|+|+|||..++-.+......+ .+.+++++...-.+
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~ 70 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGI 70 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCC
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchh
Confidence 45 689999999999987666555544431 23478998765444
No 138
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.06 E-value=2.2 Score=35.79 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=53.1
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeC
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T 179 (464)
+.++||.++++.-++.+++.+... ++.+..++|+.+...+... .+... ...+|+|+|
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~------------------~~~f~~g~~~vlvaT 88 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERV------------------LGAFRQGEVRVLVAT 88 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHH------------------HHHHHSSSCCEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHH------------------HHHHHCCCCeEEEec
Confidence 448999999999998888888765 7889999999876655322 22233 347899999
Q ss_pred chHHHHhhhcCCCcCCCCccEEEE
Q 012434 180 PGRLMDHINATRGFTLEHLCYLVV 203 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iIv 203 (464)
. .+ ..++++.++++||.
T Consensus 89 ~-----~~--~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 89 D-----VA--ARGLDIPQVDLVVH 105 (212)
T ss_dssp T-----TT--TCSSSCCCBSEEEE
T ss_pred C-----hh--hcCCCCccCcEEEE
Confidence 2 12 23477778888874
No 139
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.79 E-value=1.7 Score=35.80 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=53.3
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-hcCCcEEEeC
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiI~T 179 (464)
+.++||.++++.-++.+++.+... ++.+..++|+.+...+... .+.+ ....+|+|+|
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~------------------l~~F~~g~~~vLvaT 111 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKA------------------IEAFREGKKDVLVAT 111 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHH------------------HHHHHHTSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHH------------------HHHHhcCCCEEEEEc
Confidence 347999999999999888888765 7889999998876554322 2222 2347899999
Q ss_pred chHHHHhhhcCCCcCCCCccEEEEeh
Q 012434 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iIvDE 205 (464)
+ .+. .++++.++++||.-+
T Consensus 112 -~----~~~--~Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 112 -D----VAS--KGLDFPAIQHVINYD 130 (191)
T ss_dssp -H----HHH--TTCCCCCCSEEEESS
T ss_pred -C----chh--cCCCcccCCEEEEeC
Confidence 2 222 246677788877643
No 140
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.78 E-value=0.088 Score=41.47 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
.+.++++.||+|+|||..+
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 4688999999999999853
No 141
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.75 E-value=0.88 Score=42.90 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=22.9
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
..+++.|++|+|||.+....+. .+.. .+.+++++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~-~l~~---~G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAY-FYKK---RGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH---cCCeEEEEe
Confidence 4578899999999987554332 2332 244677765
No 142
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.43 E-value=0.15 Score=42.70 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.7
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.++++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999998643
No 143
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.40 E-value=0.098 Score=48.04 Aligned_cols=40 Identities=20% Similarity=0.002 Sum_probs=26.3
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~ 111 (464)
.|.-+++.+|+|+|||..++..+.. +.. .+.+++++....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~-~~~---~gg~VlyId~E~ 99 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE-AQK---MGGVAAFIDAEH 99 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH-HHH---TTCCEEEEESSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHh---cCCeEEEEeccc
Confidence 4567899999999999865443333 222 234688886543
No 144
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.20 E-value=0.13 Score=47.63 Aligned_cols=48 Identities=17% Similarity=0.012 Sum_probs=30.7
Q ss_pred HHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012434 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 59 ~~~i~~--~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
++.++. -+..+.-+++.+++|+|||..++-.+...... +.+++|+...
T Consensus 62 LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~----g~~vlyi~~E 111 (366)
T 1xp8_A 62 LDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA----GGTCAFIDAE 111 (366)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred HHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC----CCeEEEEECC
Confidence 444443 34456778999999999998755544443332 3368888644
No 145
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.97 E-value=0.13 Score=47.42 Aligned_cols=40 Identities=20% Similarity=0.064 Sum_probs=28.0
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012434 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
+..+.-+++.+++|+|||..++-.+...... +.+++++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~----g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeC
Confidence 4456778999999999998766544444332 336888875
No 146
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.60 E-value=0.88 Score=48.99 Aligned_cols=82 Identities=11% Similarity=0.241 Sum_probs=66.7
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhc-CccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc-cccccCCCCCCCeEE
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~-~~~~Gidip~~~~vi 408 (464)
.+.+++|.+++..-+...++.+++. ...+..+..+++..+..++...++.+..|+.+|+|+|. .+...+.+.+++++|
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4568999999999998888888753 33457888999999999999999999999999999995 455667888888887
Q ss_pred EecC
Q 012434 409 NYDK 412 (464)
Q Consensus 409 ~~~~ 412 (464)
+-..
T Consensus 731 iDEa 734 (1151)
T 2eyq_A 731 VDEE 734 (1151)
T ss_dssp EESG
T ss_pred Eech
Confidence 7554
No 147
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.35 E-value=0.44 Score=50.98 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-cc---ccCCCCCCCe
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT---RGMDVEGVNN 406 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~~---~Gidip~~~~ 406 (464)
.+.++||.+|+++.+..+++.+++.+..++.+..+||+++..++...++.+..++.+|+|+|+- +. .-+++.++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 5678999999999999999999986655689999999999988889999999999999999963 21 1245667888
Q ss_pred EEEecC
Q 012434 407 VVNYDK 412 (464)
Q Consensus 407 vi~~~~ 412 (464)
+|+...
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 887655
No 148
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.03 E-value=0.2 Score=56.21 Aligned_cols=43 Identities=19% Similarity=0.057 Sum_probs=30.8
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 012434 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~ 112 (464)
+..+.++++.+|+|+|||..+...+.+... .+.+++|+...-.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~----~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHA 1466 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT----TTCCEEEECTTSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEEcccc
Confidence 335788999999999999876655554443 3447888876543
No 149
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.67 E-value=0.1 Score=41.03 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.+.++++.||+|+|||..
T Consensus 26 ~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp CSSCEEEEEETTCCHHHH
T ss_pred CCCcEEEECCCCccHHHH
Confidence 467899999999999974
No 150
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.60 E-value=0.48 Score=38.58 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
..++++.||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 151
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.27 E-value=2 Score=36.09 Aligned_cols=106 Identities=7% Similarity=0.163 Sum_probs=67.5
Q ss_pred CeEEEEecChhhHHHHHHHHhhcCcc--ceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-c-----cccCCCCCC
Q 012434 333 EKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEGV 404 (464)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~-----~~Gidip~~ 404 (464)
.++||.+++++.+..+++.+++.... +..+..++|+.+..+.. +.+..+..+|+|+|.- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999998888776322 47888899998765543 3344566799999952 1 234667788
Q ss_pred CeEEEecCCCCc--chhhhhhhhhhcCCCCccEEEEeeC
Q 012434 405 NNVVNYDKPAYI--KTYIHRAGRTARAGQLGRCFTLLHK 441 (464)
Q Consensus 405 ~~vi~~~~~~s~--~~~~Q~~GR~~R~g~~g~~~~~~~~ 441 (464)
+++|+.....-. ..+...+.+..+.-..+.-+++++.
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 198 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSA 198 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEES
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEe
Confidence 888876543211 2344444444443333344445543
No 152
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=89.15 E-value=0.45 Score=51.53 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=30.0
Q ss_pred EEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 012434 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (464)
Q Consensus 73 li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~ 112 (464)
+|.|+.|||||.+.+--+.+.+..+ ....++|++||...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~-~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA-PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC-TTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEecCcc
Confidence 7889999999998776666666553 34468999999763
No 153
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.86 E-value=0.37 Score=43.38 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=23.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHH-hhccCCccEEEEc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLS-NRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~-~~~~~~~~~lil~ 108 (464)
+.++++.||+|+|||..+.. +...+. . .+.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~a-ia~~~~~~---~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA-MAHELSEK---KGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHHHHHH---SCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHHHh---cCCcEEEEE
Confidence 57899999999999986543 333333 2 233566554
No 154
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.16 E-value=0.24 Score=46.06 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=31.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHC--CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 012434 26 DCPLDHLPCLDPRLKVALQNM--GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 26 ~~~~~~~~~l~~~i~~~~~~~--~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~ 86 (464)
+..|+++-||++.....-+.. .+..|--++.. .+...+.+++.||+|+|||+.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~-------gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESL-------GIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHH-------TCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhC-------CCCCCCceEEeCCCCCCHHHHH
Confidence 344667767766655554432 22233333321 1223578999999999999853
No 155
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=88.11 E-value=6.6 Score=38.48 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=57.4
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-hcCCcEEEe
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiI~ 178 (464)
.+.++||.++++.-++.+++.+...... ++.+..++|+.+...+... .+.+ ....+|+|+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~------------------~~~f~~g~~~vLva 398 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSL------------------VKRFKKDESGILVC 398 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHH------------------HHHHHHCSSEEEEE
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHH------------------HHHHhcCCCCEEEE
Confidence 4558999999999999999988876442 6889999998876655322 2222 244789999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEehh
Q 012434 179 TPGRLMDHINATRGFTLEHLCYLVVDET 206 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvDE~ 206 (464)
|. .+ ..++++.++++||.-..
T Consensus 399 T~-----~~--~~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 399 TD-----VG--ARGMDFPNVHEVLQIGV 419 (563)
T ss_dssp CG-----GG--TSSCCCTTCCEEEEESC
T ss_pred cc-----hh--hcCCCcccCCEEEEECC
Confidence 93 22 23577888888886553
No 156
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.06 E-value=0.64 Score=39.53 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=26.1
Q ss_pred CCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012434 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 65 ~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
-+..|.-+++.||+|+|||..+...+...... +.+++++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~----~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD----GDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHH----TCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC----CCeEEEEEc
Confidence 34457788999999999997644433222222 225777753
No 157
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.74 E-value=0.62 Score=41.81 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998644
No 158
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.64 E-value=0.59 Score=40.32 Aligned_cols=52 Identities=19% Similarity=0.102 Sum_probs=32.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
.|.-+++.|++|+|||..++-.+.+..... +.++++++-.- -..++.+.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~---~~~v~~~s~E~-~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLEE-RARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSS-CHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCceeecccC-CHHHHHHHHHH
Confidence 467789999999999987655455444433 23578876432 23444444443
No 159
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=87.60 E-value=4.3 Score=36.12 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=53.1
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeC
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T 179 (464)
+.++||.|+++.-++.+++.+... ++.+..++|+.+...+... .+.+. ...+|+|+|
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~------------------~~~f~~g~~~vLVaT 85 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERV------------------MGAFRQGEVRVLVAT 85 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHH------------------HHHHHHTSCCEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHH------------------HHHhhcCCceEEEEe
Confidence 458999999999888888777654 7889999999776555322 22232 347899999
Q ss_pred chHHHHhhhcCCCcCCCCccEEEEeh
Q 012434 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iIvDE 205 (464)
. .+. .++++.++++||.=+
T Consensus 86 ~-----va~--~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 86 D-----VAA--RGLDIPQVDLVVHYR 104 (300)
T ss_dssp S-----TTT--CSTTCCCCSEEEESS
T ss_pred c-----hhh--cCccccceeEEEEcC
Confidence 2 222 347777888887533
No 160
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=87.48 E-value=1.4 Score=37.30 Aligned_cols=78 Identities=8% Similarity=0.130 Sum_probs=52.7
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-----c-cccCCCCCC
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEGV 404 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-----~-~~Gidip~~ 404 (464)
.+.++||.+++++.+..+++.+++....+..+..++|+.+..++... +. ...+|+|+|.- + ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 45679999999999999999998876556788888888765443322 22 34799999951 1 235667788
Q ss_pred CeEEEecC
Q 012434 405 NNVVNYDK 412 (464)
Q Consensus 405 ~~vi~~~~ 412 (464)
+++|+...
T Consensus 169 ~~lViDEa 176 (228)
T 3iuy_A 169 TYLVIDEA 176 (228)
T ss_dssp CEEEECCH
T ss_pred eEEEEECH
Confidence 88887654
No 161
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.44 E-value=0.34 Score=45.67 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=30.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHC--CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 012434 26 DCPLDHLPCLDPRLKVALQNM--GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 26 ~~~~~~~~~l~~~i~~~~~~~--~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~ 86 (464)
+..|+++-|++.......... .+..|--++.. .+...+.+++.||+|+|||+.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~-------g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDM-------GIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHH-------CCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhC-------CCCCCCeeEEECcCCCCHHHHH
Confidence 334666666655544443331 22233333321 1223578999999999999863
No 162
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.28 E-value=2.8 Score=39.56 Aligned_cols=60 Identities=22% Similarity=0.070 Sum_probs=34.7
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc--ccHHHHHHHHHHHHHhccccCceEEEee
Q 012434 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLAV 136 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~--P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 136 (464)
..+++.+++|+|||.++.-.+ ..+.. .+.+++++. |.+.-+ .+.+..+....++++....
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~---~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~ 162 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQK---RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNP 162 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHT---TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCT
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHH---CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecC
Confidence 457889999999998755433 23332 244677765 333322 3344455555567665443
No 163
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=87.25 E-value=3.8 Score=41.19 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=58.5
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEe
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~ 178 (464)
.+.++||.|+|+..++.+++.+... |+++..++|+.+...+.. +.+.+. ...+|+|+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~------------------~l~~f~~g~~~VLVa 501 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIE------------------IIRDLRLGKYDVLVG 501 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHH------------------HHHHHHHTSCSEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHH------------------HHHHHhcCCeEEEEe
Confidence 3458999999999998888888775 788888998776555422 222222 34789999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEehhhHh
Q 012434 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~ 209 (464)
|- .+ ..++++.++++||+-+++.+
T Consensus 502 T~-----~l--~~GlDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 502 IN-----LL--REGLDIPEVSLVAILDADKE 525 (661)
T ss_dssp SC-----CC--STTCCCTTEEEEEETTTTCC
T ss_pred cc-----hh--hCCcccCCCCEEEEeCcccc
Confidence 83 12 24577888999999998754
No 164
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=87.17 E-value=5.5 Score=39.29 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=58.0
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-hcCCcEEEe
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiI~ 178 (464)
.+.++||.++++.-++.+++.+...... ++.+..++|+.+...+... .+.+ ....+|+|+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~------------------~~~F~~g~~~vLVa 347 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSL------------------VKRFKKDESGILVC 347 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHH------------------HHHHHHCSSEEEEE
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHH------------------HHHhhcCCCeEEEE
Confidence 4558999999999999999998876442 6889999999876655322 2222 244789999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEehhh
Q 012434 179 TPGRLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
|- .+ ..++++.++++||.-..-
T Consensus 348 T~-----~~--~~GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 348 TD-----VG--ARGMDFPNVHEVLQIGVP 369 (579)
T ss_dssp CG-----GG--TSSCCCTTCCEEEEESCC
T ss_pred cc-----hh--hcCCCcccCCEEEEcCCC
Confidence 93 22 235778888888866543
No 165
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.13 E-value=0.35 Score=42.30 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=17.3
Q ss_pred CCCCCCEEEECCCCchhHHHh
Q 012434 66 GLFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~ 86 (464)
+..|..+++.||||+|||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 345778999999999999853
No 166
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.59 E-value=0.64 Score=40.00 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=31.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (464)
.|.-+++.||+|+|||..++..+...... +.+++++.-... ..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~----~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM----GEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT----TCCEEEEESSSC-HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEccCC-HHHHHHHHH
Confidence 46778999999999998755444443332 336888864332 344444444
No 167
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.48 E-value=0.32 Score=45.96 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=31.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHC--CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 012434 26 DCPLDHLPCLDPRLKVALQNM--GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 26 ~~~~~~~~~l~~~i~~~~~~~--~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~ 87 (464)
+..|+++-|+++.+....... .+..|--++. . .+...+.+++.||+|+|||+.+-
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~-----~--g~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQR-----V--GIKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHH-----H--CCCCCCEEEEESCTTSSHHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHh-----C--CCCCCCeEEEECCCCCcHHHHHH
Confidence 445677767666555443321 2222322322 1 12235789999999999998633
No 168
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.47 E-value=0.66 Score=40.58 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
.+.++++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999753
No 169
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=86.42 E-value=4.4 Score=37.85 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=53.5
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-hcCCcEEEe
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiI~ 178 (464)
.+.++||.++++.-++.+++.+... +..+..++|+.+...+... .+.+ ....+|+|+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~------------------~~~f~~g~~~vlva 332 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEA------------------LHQFRSGKSPILVA 332 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHH------------------HHHHHHTSSCEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHH------------------HHHHHcCCCCEEEE
Confidence 4557999999999999888888764 7889999998876555222 2222 234789999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEE
Q 012434 179 TPGRLMDHINATRGFTLEHLCYLVV 203 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIv 203 (464)
|. .+. .++++.++++||.
T Consensus 333 T~-----~~~--~Gidip~v~~Vi~ 350 (417)
T 2i4i_A 333 TA-----VAA--RGLDISNVKHVIN 350 (417)
T ss_dssp CH-----HHH--TTSCCCCEEEEEE
T ss_pred CC-----hhh--cCCCcccCCEEEE
Confidence 93 233 2477778888775
No 170
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.16 E-value=0.19 Score=45.77 Aligned_cols=32 Identities=19% Similarity=0.054 Sum_probs=22.1
Q ss_pred hHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 012434 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 55 Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~ 86 (464)
|.++...+...+..+.++++.||+|+|||..+
T Consensus 32 ~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 32 QKYMINRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp CHHHHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 44444444433445789999999999999753
No 171
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.93 E-value=0.73 Score=37.59 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
..++++.||+|+|||..+-
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 172
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=85.87 E-value=3.9 Score=35.19 Aligned_cols=78 Identities=13% Similarity=0.253 Sum_probs=54.8
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-----cc--ccCCCC
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT--RGMDVE 402 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-----~~--~Gidip 402 (464)
.+.++||.+++++.+..+++.+++.. ..+..+..++|+....+....+ .+..+|+|+|.- +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 34579999999999999888887653 2247788889988765443322 246799999952 21 356777
Q ss_pred CCCeEEEecC
Q 012434 403 GVNNVVNYDK 412 (464)
Q Consensus 403 ~~~~vi~~~~ 412 (464)
.++++|+...
T Consensus 186 ~~~~lViDEa 195 (249)
T 3ber_A 186 ALKYLVMDEA 195 (249)
T ss_dssp TCCEEEECSH
T ss_pred ccCEEEEcCh
Confidence 8888887654
No 173
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.78 E-value=0.75 Score=38.73 Aligned_cols=44 Identities=16% Similarity=-0.053 Sum_probs=28.3
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012434 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 59 ~~~i~~-~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
++.++. -+..|.-+++.+|+|+|||..+...+. .. +.+++++.-
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~----~~~v~~i~~ 53 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LS----GKKVAYVDT 53 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HH----CSEEEEEES
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---Hc----CCcEEEEEC
Confidence 344443 455677889999999999986554333 21 335777753
No 174
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=85.57 E-value=6.2 Score=39.67 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=57.5
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEe
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~ 178 (464)
.+.++||.|+|+..++.+.+.+... |+++..++|+.+...+.. +.+.+. ...+|+|+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~------------------~~~~f~~g~~~VLva 495 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQA------------------LIRDLRLGHYDCLVG 495 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHH------------------HHHHHHTTSCSEEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHH------------------HHHHhhcCCceEEEc
Confidence 3458999999999998888888775 788888898776555422 222233 34789999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEehhhHh
Q 012434 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvDE~H~~ 209 (464)
|- .+ ..++++.++++||+=+++..
T Consensus 496 T~-----~l--~~GlDip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 496 IN-----LL--REGLDIPEVSLVAILDADKE 519 (664)
T ss_dssp SC-----CC--CTTCCCTTEEEEEETTTTSC
T ss_pred cC-----hh--hcCccCCCCCEEEEeCCccc
Confidence 82 12 24577888999998887644
No 175
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.47 E-value=1.5 Score=42.46 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.+..+++.||||+|||..
T Consensus 259 ~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp TTCCEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999975
No 176
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.47 E-value=0.92 Score=40.93 Aligned_cols=61 Identities=8% Similarity=-0.243 Sum_probs=38.1
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 012434 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 58 ~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
.++.++.-+..|.-+++.|++|+|||..++-.+...... +.++++++-- .-..|+...+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~----g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT----TCEEEEEESS-SCHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEECC-CCHHHHHHHHHH
Confidence 455556556667789999999999997655444444332 2468888743 223444444443
No 177
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.12 E-value=0.45 Score=44.57 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=31.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHC--CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 012434 26 DCPLDHLPCLDPRLKVALQNM--GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 26 ~~~~~~~~~l~~~i~~~~~~~--~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~ 87 (464)
+..|+++-||++......+.. .+..|--++.. .+...+.+|+.||+|+|||+.+-
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~-------Gi~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEM-------GIKPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHH-------TCCCCSEEEEESSTTTTHHHHHH
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhC-------CCCCCCCCceECCCCchHHHHHH
Confidence 345666667766555443331 22233333322 12235779999999999998633
No 178
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.91 E-value=0.42 Score=44.22 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
...++++.||+|+|||.++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999998643
No 179
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.78 E-value=0.53 Score=39.19 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=19.8
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 012434 58 VWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 58 ~~~~i~~~~~~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.+-....+++.||+|+|||..+.
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 344444433333458999999999998643
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.65 E-value=1 Score=38.44 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 36789999999999998643
No 181
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=84.56 E-value=0.81 Score=36.03 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.||+|+|||..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999998533
No 182
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=84.33 E-value=1.5 Score=47.44 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=43.0
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhc--------cCCccEEEEcccHHHHHHHHHHHHHhc
Q 012434 70 RDLCINSPTGSGKTLSYALPIVQTLSNRA--------VRCLRALVVLPTRDLALQVKDVFAAIA 125 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (464)
...+|.|+-|||||.+...-++..+...+ .....+|+||=|+.-+.++.+.+....
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 45599999999999997776777665321 233479999999998888888887653
No 183
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.56 E-value=5 Score=36.99 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=55.6
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEe
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~ 178 (464)
.+.++||.++++.-+..+++.+... ++.+..++|+.+...+.. ..+.+. ....|+|+
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~~~~~vlv~ 306 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLS------------------RYQQFKDFQRRILVA 306 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHH------------------HHHHHHTTCCSEEEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHH------------------HHHHHhcCCCcEEEE
Confidence 3458999999999999888888765 778899999877655422 222222 34789999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEehhh
Q 012434 179 TPGRLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
|. . -..++++.++++||.-+.-
T Consensus 307 T~-----~--~~~Gidi~~~~~Vi~~~~p 328 (391)
T 1xti_A 307 TN-----L--FGRGMDIERVNIAFNYDMP 328 (391)
T ss_dssp SC-----C--CSSCBCCTTEEEEEESSCC
T ss_pred CC-----h--hhcCCCcccCCEEEEeCCC
Confidence 93 1 1235778888888875543
No 184
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.43 E-value=1 Score=42.85 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=30.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~ 115 (464)
..++++.|+||+|||... ..++..+.. .+..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~---~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL---RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH---TTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH---CCCcEEEEeCCCchhH
Confidence 578999999999999874 334444433 2346888888777653
No 185
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.19 E-value=2.1 Score=37.32 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=30.6
Q ss_pred CHHHHHHHHHCCCCccchhhH-HhHHhhhCCCCC-CCCEEEECCCCchhHHHhH
Q 012434 36 DPRLKVALQNMGISSLFPVQV-AVWQETIGPGLF-ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 36 ~~~i~~~~~~~~~~~l~~~Q~-~~~~~i~~~~~~-~~~~li~~~tG~GKT~~~~ 87 (464)
-..+.+.|+-.|++ +.+. .++..+++.... ...+++.||+|+|||..+.
T Consensus 72 ~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34677788777764 3442 223444443212 2348999999999998655
No 186
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.04 E-value=2.5 Score=35.82 Aligned_cols=77 Identities=10% Similarity=0.147 Sum_probs=54.8
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCc--cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-c-----cccCCCC
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVE 402 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~-----~~Gidip 402 (464)
.+.++||.+++++.+..+.+.+++.+. .+..+..++|+.+..++...+ .+.+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 356899999999999999998887642 257888899998765543332 35799999963 1 2345666
Q ss_pred CCCeEEEecC
Q 012434 403 GVNNVVNYDK 412 (464)
Q Consensus 403 ~~~~vi~~~~ 412 (464)
.++++|+-..
T Consensus 166 ~~~~lViDEa 175 (230)
T 2oxc_A 166 SIRLFILDEA 175 (230)
T ss_dssp GCCEEEESSH
T ss_pred cCCEEEeCCc
Confidence 7777777553
No 187
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=82.89 E-value=5.2 Score=37.18 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=53.5
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeC
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T 179 (464)
..++||.++++.-+..+++.+... +..+..++|+.+..++.. +.+.+. ...+|+|+|
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~g~~~vlv~T 323 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAA------------------VIERFREGKEKVLVTT 323 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHH------------------HHHHHHTTSCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHH------------------HHHHHHCCCCcEEEEc
Confidence 447999999999999888888775 678899999887665522 223333 347899999
Q ss_pred chHHHHhhhcCCCcCCCCccEEEE
Q 012434 180 PGRLMDHINATRGFTLEHLCYLVV 203 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iIv 203 (464)
. .+ ..++++.++++||.
T Consensus 324 ~-----~~--~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 324 N-----VC--ARGIDVEQVSVVIN 340 (412)
T ss_dssp G-----GG--TSSCCCTTEEEEEE
T ss_pred C-----cc--ccCCCccCCCEEEE
Confidence 3 22 23577888888884
No 188
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=82.83 E-value=0.24 Score=47.85 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=22.2
Q ss_pred hHHhHHhhhCCCCCCCCEEEECCCCchhHHH
Q 012434 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 55 Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~ 85 (464)
|.+++..+...+..+.++++.||+|+|||..
T Consensus 27 q~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 27 RSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 4444444444444578999999999999974
No 189
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=82.82 E-value=5.8 Score=36.52 Aligned_cols=78 Identities=13% Similarity=0.249 Sum_probs=55.6
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeC
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T 179 (464)
+.++||.++++.-++.+++.++.. +..+..++|+.+..++.. +.+.+. ...+|+|+|
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~g~~~vlv~T 300 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDR------------------LIDDFREGRSKVLITT 300 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHH------------------HHHHHHTTSCCEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHH------------------HHHHHHCCCCCEEEEC
Confidence 457999999999998888888765 678899999887655522 223333 347899999
Q ss_pred chHHHHhhhcCCCcCCCCccEEEEehhh
Q 012434 180 PGRLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
. .+ ..++++.++++||.-+..
T Consensus 301 ~-----~~--~~Gidip~~~~Vi~~~~p 321 (395)
T 3pey_A 301 N-----VL--ARGIDIPTVSMVVNYDLP 321 (395)
T ss_dssp G-----GG--SSSCCCTTEEEEEESSCC
T ss_pred C-----hh--hcCCCcccCCEEEEcCCC
Confidence 3 22 245778889998875543
No 190
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=82.76 E-value=1.2 Score=40.05 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.0
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.++++.||+|+|||..+-
T Consensus 39 ~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CeEEEECcCCcCHHHHHH
Confidence 359999999999997643
No 191
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.61 E-value=0.96 Score=42.55 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=21.4
Q ss_pred hhHHhHHhhhCCCCCCCCEEEECCCCchhHHH
Q 012434 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 54 ~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~ 85 (464)
.+..++..++. ..+..+++.||||+|||..
T Consensus 154 ~~~~~L~~l~~--~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIK--RPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHT--SSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHH--hcCCeEEEECCCCCCHHHH
Confidence 44556665542 3456689999999999985
No 192
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.57 E-value=2.9 Score=37.09 Aligned_cols=49 Identities=10% Similarity=-0.022 Sum_probs=31.0
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012434 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 58 ~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
++..+.-.+..|.-+++.||+|+|||..+...+.. +... .+.+++++..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~-~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ-WGTA--MGKKVGLAML 72 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH-HHHT--SCCCEEEEES
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH-HHHH--cCCeEEEEeC
Confidence 45555555667888999999999999865433332 2221 1336777753
No 193
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=82.56 E-value=0.37 Score=43.27 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998643
No 194
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=82.53 E-value=0.95 Score=37.76 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=17.9
Q ss_pred CCCCCCCEEEECCCCchhHHHh
Q 012434 65 PGLFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 65 ~~~~~~~~li~~~tG~GKT~~~ 86 (464)
++..+.-+++.||+|+|||...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH
Confidence 4556888999999999999853
No 195
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=82.39 E-value=1.4 Score=41.84 Aligned_cols=48 Identities=10% Similarity=-0.220 Sum_probs=33.2
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012434 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 58 ~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
.++.++.-+..|.-+++.|++|+|||..++-.+...... +.++++++-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSl 233 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSL 233 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEEC
Confidence 345556555567779999999999998765545544443 346888874
No 196
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.35 E-value=5.1 Score=33.03 Aligned_cols=77 Identities=10% Similarity=0.166 Sum_probs=52.9
Q ss_pred CCeEEEEecChhhHHHHHHHHhhcCcc--ceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-----ccc-cCCCCC
Q 012434 332 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR-GMDVEG 403 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-----~~~-Gidip~ 403 (464)
+.++||.++++..+..+++.+++.... +..+..++|+.+..+.. ..+ .+..+|+|+|.- +.. .+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---Hhc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999988888765321 46788888887764332 222 346789999962 222 346667
Q ss_pred CCeEEEecC
Q 012434 404 VNNVVNYDK 412 (464)
Q Consensus 404 ~~~vi~~~~ 412 (464)
++++|+...
T Consensus 147 ~~~lViDEa 155 (206)
T 1vec_A 147 VQMIVLDEA 155 (206)
T ss_dssp CCEEEEETH
T ss_pred CCEEEEECh
Confidence 888887554
No 197
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=82.34 E-value=0.63 Score=41.76 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
.+.++++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999853
No 198
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=82.27 E-value=2.9 Score=41.43 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=52.4
Q ss_pred CCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHH--hcCCeeEEEEcc
Q 012434 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF--REGKIQVLVSSD 393 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f--~~~~~~iLi~t~ 393 (464)
++.+||.+|++.-+....+.|++.+ +.+..++|+++..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG---ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT---CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5789999999999999999998876 8899999999999888888887 467889999997
No 199
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.26 E-value=5 Score=33.09 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=54.0
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc-----ccc-ccCCCCCC
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEGV 404 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~-----~~~-~Gidip~~ 404 (464)
.+.++||.++++..+..+++.+++.... ..+..++|+.........+. +..+|+|+|. .+. ..+++..+
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 145 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPH-LKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRV 145 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTT-SCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhc-ceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhc
Confidence 3568999999999999999999876432 56777888877644433332 2478999995 222 24567778
Q ss_pred CeEEEecC
Q 012434 405 NNVVNYDK 412 (464)
Q Consensus 405 ~~vi~~~~ 412 (464)
+.+|+...
T Consensus 146 ~~iViDEa 153 (207)
T 2gxq_A 146 EVAVLDEA 153 (207)
T ss_dssp SEEEEESH
T ss_pred eEEEEECh
Confidence 88887654
No 200
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.21 E-value=0.58 Score=42.88 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.2
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.++++.||+|+|||..+-
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 459999999999998643
No 201
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.07 E-value=1.5 Score=40.94 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~ 112 (464)
.+.++++.|+||+|||...-..+.. +.. .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~-~~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR-EYM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH-HHT---TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH-HHH---CCCEEEEEeCCcC
Confidence 4678999999999999865443333 332 3447888877654
No 202
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=82.02 E-value=6.8 Score=36.24 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=54.0
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEe
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~ 178 (464)
...++||.++++.-++.+++.+... ++.+..++|+.+...+.. +.+.+. ....|+|+
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~g~~~vLv~ 314 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNK------------------VFHEFRQGKVRTLVC 314 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHH------------------HHHHHHTTSSSEEEE
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHH------------------HHHHHhcCCCcEEEE
Confidence 3458999999999999888888775 678899999887655522 222232 34789999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEeh
Q 012434 179 TPGRLMDHINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvDE 205 (464)
|. .+ ..++++.++++||.-+
T Consensus 315 T~-----~~--~~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 315 SD-----LL--TRGIDIQAVNVVINFD 334 (400)
T ss_dssp SS-----CS--SSSCCCTTEEEEEESS
T ss_pred cC-----cc--ccCCCccCCCEEEEeC
Confidence 93 11 2357777888887543
No 203
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=81.99 E-value=2.7 Score=40.93 Aligned_cols=77 Identities=10% Similarity=0.112 Sum_probs=60.7
Q ss_pred CCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-cc-----ccCCCCCCC
Q 012434 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT-----RGMDVEGVN 405 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~~-----~Gidip~~~ 405 (464)
.+.+||.++.+.-+....+.|++.+ +.+..++++.+..++..+...+..+..+|+++|+- +. ..++...++
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG---VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 5789999999999999999998876 78889999999988888899999999999999852 21 123334555
Q ss_pred eEEEec
Q 012434 406 NVVNYD 411 (464)
Q Consensus 406 ~vi~~~ 411 (464)
.+|+-.
T Consensus 142 ~vViDE 147 (523)
T 1oyw_A 142 LLAVDE 147 (523)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 666544
No 204
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=81.95 E-value=3.2 Score=33.64 Aligned_cols=59 Identities=5% Similarity=-0.062 Sum_probs=39.0
Q ss_pred hhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 012434 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (464)
Q Consensus 53 ~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q 116 (464)
+.|..+...++. ...+-.++.++-|++|+...+..++..... .+.++.+|+|+..-...
T Consensus 37 ~~~~~a~~~l~~--s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~---~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 37 AGYSDAVSVLAQ--DRPSLAIVSGQGGAAGQRERVAELVMMARE---QGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHH--HSCCEECCBCSSCSHHHHHHHHHHHHHHHH---TTCCEEEECSTTHHHHH
T ss_pred ccchhHHHHHhc--cCCceEEEecccchHHHHHHHHHHHHHHHh---cCeEEEEEcCchHHHHH
Confidence 456677666543 123557889999999998855444433333 45689999999765543
No 205
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=81.93 E-value=10 Score=35.82 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=59.4
Q ss_pred CCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeec--------CCchhHHHHHhh
Q 012434 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--------QSSIADEISELI 149 (464)
Q Consensus 78 tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g--------~~~~~~~~~~~~ 149 (464)
..++|..... .++...... ..+.++||.++++.-+..+.+.+... ++++..++| +.+...+
T Consensus 340 ~~~~k~~~l~-~~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r----- 408 (494)
T 1wp9_A 340 LDHPKMDKLK-EIIREQLQR-KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQ----- 408 (494)
T ss_dssp CSCHHHHHHH-HHHHHHHHH-CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHH-----
T ss_pred CCChHHHHHH-HHHHHHhcc-CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHH-----
Confidence 3455655422 233332211 23558999999999988888888776 788999999 3333322
Q ss_pred ccccccccccCCchhHHHhhh-cCCcEEEeCchHHHHhhhcCCCcCCCCccEEEEehhh
Q 012434 150 KRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
..+.+.+. ...+|+|+|. .+ ..++++...++||+-+..
T Consensus 409 -------------~~~~~~F~~~~~~vLv~T~-~~------~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 409 -------------KLILDEFARGEFNVLVATS-VG------EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp -------------HHHHHHHHHTSCSEEEECG-GG------GGGGGSTTCCEEEESSCC
T ss_pred -------------HHHHHHHhcCCceEEEECC-cc------ccCCCchhCCEEEEeCCC
Confidence 22223333 3478999992 21 234777778888866544
No 206
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=81.81 E-value=0.82 Score=37.97 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.++.+++.|++|+|||..+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999998644
No 207
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=81.78 E-value=1.9 Score=35.62 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=28.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil 107 (464)
...+++..++|.|||.+++-.++..+..+ .+|+|+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G----~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG----KNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT----CCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEE
Confidence 46799999999999999887777766653 478888
No 208
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=81.75 E-value=0.82 Score=41.39 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
...+++.||+|+|||..+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999998643
No 209
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.68 E-value=1.3 Score=42.22 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.++++++.||+|+|||..+-
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 35789999999999998644
No 210
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=81.51 E-value=0.92 Score=39.45 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
....+++.||+|+|||..+-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35679999999999998643
No 211
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=81.34 E-value=0.91 Score=37.71 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=15.1
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
.++-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3678999999999999853
No 212
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.25 E-value=0.9 Score=40.66 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.++.+++.||+|+|||..+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 46789999999999998643
No 213
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=81.25 E-value=13 Score=35.01 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=52.8
Q ss_pred cEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeCch
Q 012434 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPG 181 (464)
Q Consensus 103 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T~~ 181 (464)
++||.++++.-++.+++.+... +.++..++|+.+..++.. ..+.+. ....|+|+|.
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~------------------~l~~F~~g~~~vLvaT~- 358 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQ------------------ALRDFKNGSMKVLIATS- 358 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHH------------------HHHHHHTSSCSEEEECG-
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHH------------------HHHHHHcCCCcEEEEch-
Confidence 4999999999998888888765 788999999987665532 222233 3478999993
Q ss_pred HHHHhhhcCCCcCCCCccEEEEe
Q 012434 182 RLMDHINATRGFTLEHLCYLVVD 204 (464)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iIvD 204 (464)
.+. .++++.++++||.-
T Consensus 359 ----v~~--rGlDi~~v~~VI~~ 375 (434)
T 2db3_A 359 ----VAS--RGLDIKNIKHVINY 375 (434)
T ss_dssp ----GGT--SSCCCTTCCEEEES
T ss_pred ----hhh--CCCCcccCCEEEEE
Confidence 222 35778888888853
No 214
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=81.17 E-value=0.97 Score=36.81 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667899999999999853
No 215
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=81.14 E-value=4.1 Score=34.81 Aligned_cols=77 Identities=10% Similarity=0.210 Sum_probs=54.4
Q ss_pred CCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc-----ccc-ccCCCCCC
Q 012434 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEGV 404 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~-----~~~-~Gidip~~ 404 (464)
+.++||.+++++.+..+.+.+++.. ..++.+..++|+.+..+....+. . ..+|+|+|+ .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 5579999999999998888777642 22477888899888765544443 2 478999995 222 24577788
Q ss_pred CeEEEecC
Q 012434 405 NNVVNYDK 412 (464)
Q Consensus 405 ~~vi~~~~ 412 (464)
+++|+...
T Consensus 178 ~~lViDEa 185 (242)
T 3fe2_A 178 TYLVLDEA 185 (242)
T ss_dssp CEEEETTH
T ss_pred cEEEEeCH
Confidence 88877654
No 216
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.07 E-value=0.93 Score=40.06 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
.+..+++.||+|+|||..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4577999999999999853
No 217
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.97 E-value=1.1 Score=42.49 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=30.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHC--CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 012434 26 DCPLDHLPCLDPRLKVALQNM--GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 26 ~~~~~~~~~l~~~i~~~~~~~--~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~ 86 (464)
+..|+++-|++......-+.. .+..|-.++ .+ .+...+.+|+.||+|+|||+.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~-----~~--Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFA-----TL--GIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHH-----HH--TCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHH-----HC--CCCCCCceEeeCCCCCcHHHHH
Confidence 355777767665444433322 122222222 21 1223578999999999999853
No 218
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.96 E-value=1.3 Score=36.01 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.|++|+|||..+-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 46789999999999998643
No 219
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.95 E-value=1.2 Score=42.00 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=30.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHC--CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 012434 26 DCPLDHLPCLDPRLKVALQNM--GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 26 ~~~~~~~~~l~~~i~~~~~~~--~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~ 87 (464)
+..|+++-|++.......... .+..|--++ .+ .+...+.+++.||+|+|||..+-
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~-----~~--g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYE-----QI--GIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHH-----HH--CCCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHH-----hC--CCCCCceEEEECCCCCCHHHHHH
Confidence 344666667665544443321 222222222 21 12235779999999999998633
No 220
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=80.95 E-value=1.1 Score=36.09 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHh
Q 012434 69 ERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~ 86 (464)
+..+.+.|++|+|||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999853
No 221
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=80.91 E-value=2.3 Score=40.61 Aligned_cols=50 Identities=6% Similarity=-0.142 Sum_probs=33.5
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012434 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 58 ~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
.++.+..-+..|.-+++.|++|+|||..++-.+....... +.++++++..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~~s~E 241 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAIFSLE 241 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEEEESS
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEEECC
Confidence 4555665566778899999999999986554444433321 3368888743
No 222
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.83 E-value=1.9 Score=39.18 Aligned_cols=58 Identities=14% Similarity=-0.109 Sum_probs=35.9
Q ss_pred HHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHH
Q 012434 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (464)
Q Consensus 59 ~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 121 (464)
++.+..-+..|.-+++.|++|+|||..++-.+..... .+.+++|++.-- -..|+...+
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----~g~~Vl~fSlEm-s~~ql~~Rl 93 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----DDRGVAVFSLEM-SAEQLALRA 93 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----TTCEEEEEESSS-CHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEeCCC-CHHHHHHHH
Confidence 4445555556777999999999999865544444433 234688886432 233444444
No 223
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=80.70 E-value=1.7 Score=36.70 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=18.8
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHH
Q 012434 70 RDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
-++++.++.|+|||..++-.+.....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 35899999999999985544444333
No 224
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=80.63 E-value=2.2 Score=40.56 Aligned_cols=49 Identities=12% Similarity=-0.128 Sum_probs=32.6
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012434 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 58 ~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
.++.++.-+..|.-+++.|++|+|||..++-.+...... .+.++++++.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g~~vl~~sl 237 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EGVGVGIYSL 237 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCCCEEEEES
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEEC
Confidence 345556556667778999999999997655544444332 1346888864
No 225
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=80.62 E-value=7.7 Score=32.81 Aligned_cols=77 Identities=10% Similarity=0.173 Sum_probs=52.5
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-c----cc--cCCCC
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----TR--GMDVE 402 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~----~~--Gidip 402 (464)
.+.++||.++++..+..+++.+++.+ ..+..+..++|+.+.......+ ++.+|+|+|.- + .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 35689999999999999999888764 2346788888887654433322 35799999952 2 22 35666
Q ss_pred CCCeEEEecC
Q 012434 403 GVNNVVNYDK 412 (464)
Q Consensus 403 ~~~~vi~~~~ 412 (464)
+++++|+...
T Consensus 171 ~~~~lViDEa 180 (236)
T 2pl3_A 171 DLQMLVLDEA 180 (236)
T ss_dssp TCCEEEETTH
T ss_pred cccEEEEeCh
Confidence 7878877554
No 226
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.42 E-value=3.4 Score=35.22 Aligned_cols=79 Identities=10% Similarity=0.206 Sum_probs=48.3
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCc-cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc-----cccc-cCCCCC
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEG 403 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~-----~~~~-Gidip~ 403 (464)
.+.++||.+++++.+..+++.+++.+. .+..+..++|+.... ...+.+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 356899999999999999998887642 245666777776543 233445566689999994 2333 356667
Q ss_pred CCeEEEecC
Q 012434 404 VNNVVNYDK 412 (464)
Q Consensus 404 ~~~vi~~~~ 412 (464)
++++|+...
T Consensus 174 ~~~lViDEa 182 (237)
T 3bor_A 174 IKMFVLDEA 182 (237)
T ss_dssp CCEEEEESH
T ss_pred CcEEEECCc
Confidence 888877654
No 227
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=80.40 E-value=7.1 Score=36.29 Aligned_cols=75 Identities=15% Similarity=0.275 Sum_probs=53.2
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeCc
Q 012434 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATP 180 (464)
Q Consensus 102 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T~ 180 (464)
.++||.++++.-++.+++.+... ++.+..++|+.+..++.. +.+.+. ....|+|+|.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~------------------~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERES------------------IMKEFRSGASRVLISTD 334 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHH------------------HHHHHHHTSSCEEEECG
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHH------------------HHHHHHCCCCCEEEECC
Confidence 47999999999998888888765 678899999887655422 222232 3478999993
Q ss_pred hHHHHhhhcCCCcCCCCccEEEEeh
Q 012434 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iIvDE 205 (464)
.+ ..++++.++++||.-+
T Consensus 335 -----~~--~~Gidi~~v~~Vi~~~ 352 (410)
T 2j0s_A 335 -----VW--ARGLDVPQVSLIINYD 352 (410)
T ss_dssp -----GG--SSSCCCTTEEEEEESS
T ss_pred -----hh--hCcCCcccCCEEEEEC
Confidence 22 2357788888888643
No 228
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.14 E-value=0.87 Score=41.21 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
+.+++.||||+|||..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468899999999998644
No 229
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.09 E-value=1.4 Score=40.62 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4689999999999998643
No 230
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.00 E-value=0.87 Score=37.68 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.8
Q ss_pred CCCEEEECCCCchhHHH
Q 012434 69 ERDLCINSPTGSGKTLS 85 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~ 85 (464)
++-+++.||||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56689999999999975
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.92 E-value=1.2 Score=39.55 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
...+++.||+|+|||..+-
T Consensus 36 p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CSEEEEEECTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568899999999998643
No 232
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=79.92 E-value=1 Score=36.76 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
++.+++.|++|+|||.++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5678999999999998644
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=79.80 E-value=1.9 Score=38.42 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=23.7
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
.++.+++.+++|+|||.+....+. .+... .+.+++++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~-~l~~~--~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA-ISMLE--KHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH-HHHHT--TCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHHHh--cCCEEEEEe
Confidence 356788999999999987554332 22211 234677664
No 234
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=79.70 E-value=1.8 Score=39.65 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=18.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHH
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
+..+++.||||+|||...- +++..+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~-~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLA-AMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHH-HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH-HHHhccc
Confidence 4578999999999997533 2444443
No 235
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=79.66 E-value=0.3 Score=43.92 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.2
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 468999999999998644
No 236
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=79.66 E-value=5.6 Score=36.20 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=53.0
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEe
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~ 178 (464)
.+.++||.++++.-++.+++.++.. +..+..++|+.+...+.. +.+.+. ...+|+|+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~~~~~vlv~ 294 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREK------------------VIRLFKQKKIRILIA 294 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHH------------------HHHHHHTTSSSEEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHH------------------HHHHHHcCCCeEEEE
Confidence 3457999999999999888888775 778999999877655422 222222 34789999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEeh
Q 012434 179 TPGRLMDHINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvDE 205 (464)
|. . +.. ++++.++++||.-+
T Consensus 295 T~-~----~~~--Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 295 TD-V----MSR--GIDVNDLNCVINYH 314 (367)
T ss_dssp CT-T----HHH--HCCCSCCSEEEESS
T ss_pred CC-h----hhc--CCCcccCCEEEEec
Confidence 93 2 221 35666788887644
No 237
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=79.63 E-value=0.9 Score=36.76 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchhHHHh
Q 012434 69 ERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~ 86 (464)
+..+++.|++|+|||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999853
No 238
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=79.56 E-value=1.4 Score=42.89 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=26.9
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
..++++.|.||+|||......++..+....+...+++++=|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 578999999999999875554554444333333344555454
No 239
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.29 E-value=0.69 Score=42.25 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.5
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
++++.||+|+|||..+-
T Consensus 48 ~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 38999999999998644
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=79.05 E-value=1.2 Score=36.98 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
.|.-+.+.||+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677889999999999853
No 241
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.97 E-value=1.1 Score=39.84 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHh
Q 012434 69 ERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~ 86 (464)
+..+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999853
No 242
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=78.85 E-value=1.2 Score=37.20 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
.|.-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3566889999999999853
No 243
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=78.66 E-value=1.8 Score=41.78 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=20.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHH
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
.+.++++.|+||+|||...-..+...+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3688999999999999865443443333
No 244
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=78.60 E-value=1.4 Score=35.93 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.|++|+|||.++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35779999999999998643
No 245
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.59 E-value=1 Score=39.60 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
..++++.||+|+|||..+-
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4679999999999998644
No 246
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=78.40 E-value=1.4 Score=36.66 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=15.5
Q ss_pred CCEEEECCCCchhHHHhHH
Q 012434 70 RDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~ 88 (464)
.-.++.|++|+|||..+..
T Consensus 6 mi~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHH
Confidence 4578999999999997543
No 247
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=78.20 E-value=2.2 Score=36.60 Aligned_cols=23 Identities=26% Similarity=0.109 Sum_probs=18.3
Q ss_pred CCCCCCEEEECCCCchhHHHhHH
Q 012434 66 GLFERDLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~ 88 (464)
+..|.-+.+.||+|+|||..+..
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH
Confidence 34578899999999999986443
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=77.96 E-value=1.1 Score=36.84 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.|..+++.||+|+|||..
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467789999999999985
No 249
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=77.58 E-value=1.4 Score=36.56 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
.|.-+.+.||+|+|||..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999853
No 250
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=77.46 E-value=1.5 Score=40.63 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5689999999999998643
No 251
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=77.41 E-value=1.2 Score=40.32 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4779999999999998643
No 252
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=77.19 E-value=1 Score=36.16 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
-+++.|++|+|||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999998543
No 253
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=77.15 E-value=1.3 Score=39.63 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=14.5
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.-+++.||||+|||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347889999999998644
No 254
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=77.07 E-value=1.9 Score=36.12 Aligned_cols=30 Identities=23% Similarity=0.031 Sum_probs=22.1
Q ss_pred hhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 012434 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 54 ~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~ 87 (464)
.|..++..+- .|.-+.+.||.|+|||...-
T Consensus 11 g~~~~l~~i~----~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 11 GQKHYVDAID----TNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp HHHHHHHHHH----HCSEEEEECCTTSSTTHHHH
T ss_pred hHHHHHHhcc----CCCEEEEECCCCCCHHHHHH
Confidence 3555666653 47888999999999998533
No 255
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=77.02 E-value=1.5 Score=37.19 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.5
Q ss_pred CCEEEECCCCchhHHHh
Q 012434 70 RDLCINSPTGSGKTLSY 86 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~ 86 (464)
..+++.||+|+|||..+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999763
No 256
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=76.96 E-value=2.3 Score=41.24 Aligned_cols=58 Identities=5% Similarity=-0.101 Sum_probs=35.5
Q ss_pred HhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHH
Q 012434 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (464)
Q Consensus 60 ~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 121 (464)
+.++.-+..|.-+++.|++|+|||..++-.+...... .+.++++++---. ..|+...+
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SCCCEEEEESSSC-HHHHHHHH
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cCCcEEEEeccCC-HHHHHHHH
Confidence 4445445567778999999999998755444443332 1447888874322 33444444
No 257
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.93 E-value=1.3 Score=38.42 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHh
Q 012434 69 ERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~ 86 (464)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456999999999999853
No 258
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=76.69 E-value=1.7 Score=43.04 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHH
Q 012434 71 DLCINSPTGSGKTLS 85 (464)
Q Consensus 71 ~~li~~~tG~GKT~~ 85 (464)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 259
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.63 E-value=2 Score=39.28 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=14.9
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.++++.||+|+|||..+-
T Consensus 37 ~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 349999999999998643
No 260
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=76.42 E-value=1.2 Score=41.16 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=16.7
Q ss_pred CCCCCEEEECCCCchhHHHh
Q 012434 67 LFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~~ 86 (464)
..+..+++.||||+|||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677999999999999863
No 261
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=76.38 E-value=1.4 Score=39.33 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=14.5
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.-+++.||||+|||..+.
T Consensus 11 ~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCccCHHHHHH
Confidence 347889999999998644
No 262
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=76.20 E-value=1.9 Score=39.66 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
...+++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999998643
No 263
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=76.03 E-value=1.8 Score=36.48 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=16.0
Q ss_pred CCCCCEEEECCCCchhHHH
Q 012434 67 LFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~ 85 (464)
..|+-+.+.||+|+|||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999974
No 264
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=75.87 E-value=1.8 Score=35.84 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.|+.|+|||.+.-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46778999999999998643
No 265
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.83 E-value=1.5 Score=40.40 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.|..+++.||||+|||..
T Consensus 174 ~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTL 191 (361)
T ss_dssp TTCCEEEEESSSSCHHHH
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 588999999999999984
No 266
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.70 E-value=1.9 Score=47.95 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=31.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q 116 (464)
+|..+.+.+|.|+|||..++-.+.+.-. .+.+++++.+--++...
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~----~g~~~~~i~~e~~~~~~ 1474 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHALDPI 1474 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEECTTSCCCHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHh----cCCeEEEEecCCCCCHH
Confidence 3566999999999999886554444333 34578999876665544
No 267
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=75.65 E-value=1.7 Score=36.02 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.++-+++.||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 367789999999999985
No 268
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=75.53 E-value=2.2 Score=38.66 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
..++++.||+|+|||..+-
T Consensus 55 ~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCCEEEECSTTSSHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4689999999999998643
No 269
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.28 E-value=2 Score=38.79 Aligned_cols=44 Identities=16% Similarity=-0.087 Sum_probs=27.0
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHHHhh--ccCCccEEEEccc
Q 012434 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPT 110 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~--~~~~~~~lil~P~ 110 (464)
..|.-+++.|++|+|||..++..+....... +..+.+++++.-.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 3456789999999999987554444322210 0013468888644
No 270
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=75.24 E-value=1 Score=44.82 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=22.7
Q ss_pred hHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 012434 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 55 Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~ 86 (464)
|..++..+...+..+..+++.||+|+|||..+
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHH
Confidence 44444444444445789999999999999853
No 271
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.08 E-value=2.3 Score=50.32 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 012434 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~ 87 (464)
|.+.+.+.++++|+ .+.+.+..=+-.+++.+.-...+++.||||+|||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 34556677778887 45555544333445555556779999999999998754
No 272
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=74.87 E-value=1.7 Score=40.40 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
..++++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999998643
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=74.79 E-value=1.3 Score=35.46 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.1
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
.+++.|++|+|||.++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 274
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=74.76 E-value=1.1 Score=39.18 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
...+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4568999999999998643
No 275
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=74.73 E-value=2 Score=35.11 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.7
Q ss_pred CCEEEECCCCchhHHH
Q 012434 70 RDLCINSPTGSGKTLS 85 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~ 85 (464)
+-+.+.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999985
No 276
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=74.72 E-value=2.8 Score=37.49 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=22.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
++-+++.+++|+|||.+....+. .+.. .+.+++++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~-~l~~---~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK-MFVD---EGKSVVLAA 139 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHH-HHHh---cCCEEEEEc
Confidence 34578899999999987543222 2222 233676664
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=74.69 E-value=1.2 Score=36.23 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||..+-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5678999999999998644
No 278
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=74.67 E-value=1.6 Score=37.79 Aligned_cols=17 Identities=41% Similarity=0.194 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
-+++.||+|+|||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36889999999998643
No 279
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=74.63 E-value=15 Score=26.26 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=51.1
Q ss_pred EEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc--ccccC-----CCCCCCeE
Q 012434 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA--MTRGM-----DVEGVNNV 407 (464)
Q Consensus 335 ~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~--~~~Gi-----dip~~~~v 407 (464)
.+||.+.-+-..++.+.++..| ..+..+.++.....|.+-++.|..-..++--.-+. +.+.+ -.|.++.|
T Consensus 5 fvvfssdpeilkeivreikrqg---vrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvv 81 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG---VRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVV 81 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT---CEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCC---eEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEE
Confidence 5677777777788888887766 88888999999888889999998765554332221 11111 23667777
Q ss_pred EEecC
Q 012434 408 VNYDK 412 (464)
Q Consensus 408 i~~~~ 412 (464)
++...
T Consensus 82 vivtt 86 (162)
T 2l82_A 82 VIVTT 86 (162)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 66543
No 280
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=74.46 E-value=2.4 Score=37.20 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=14.0
Q ss_pred CCEEEECCCCchhHHH
Q 012434 70 RDLCINSPTGSGKTLS 85 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~ 85 (464)
+.+++.||+|+|||..
T Consensus 45 ~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLL 60 (274)
T ss_dssp SEEEEESSTTSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 4499999999999985
No 281
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=74.44 E-value=1.4 Score=36.11 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||..+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998643
No 282
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=74.40 E-value=12 Score=32.31 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=53.8
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc-----cc--cccCCCC
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AM--TRGMDVE 402 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~-----~~--~~Gidip 402 (464)
.+.++||.++++..+...++.+++.. ..+..+..+.|+......... +..+ .+|+|+|+ .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 35679999999999999998888753 234566777887765443332 3333 79999994 12 2246777
Q ss_pred CCCeEEEecC
Q 012434 403 GVNNVVNYDK 412 (464)
Q Consensus 403 ~~~~vi~~~~ 412 (464)
.++++|+-..
T Consensus 201 ~l~~lViDEa 210 (262)
T 3ly5_A 201 NLQCLVIDEA 210 (262)
T ss_dssp TCCEEEECSH
T ss_pred cCCEEEEcCh
Confidence 8888887554
No 283
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=74.27 E-value=1.2 Score=36.51 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998643
No 284
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.14 E-value=11 Score=32.26 Aligned_cols=76 Identities=12% Similarity=0.198 Sum_probs=52.6
Q ss_pred CeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-c-----cccCCCCCCC
Q 012434 333 EKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEGVN 405 (464)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~-----~~Gidip~~~ 405 (464)
.++||.+++++.+..+.+.+++.. ..+..+..++|+.+..+.... + ....+|+|+|.- + ...+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 589999999999999988887653 234677778888765443322 2 245799999952 1 1235677788
Q ss_pred eEEEecC
Q 012434 406 NVVNYDK 412 (464)
Q Consensus 406 ~vi~~~~ 412 (464)
++|+...
T Consensus 177 ~lViDEa 183 (253)
T 1wrb_A 177 YIVLDEA 183 (253)
T ss_dssp EEEEETH
T ss_pred EEEEeCH
Confidence 8887654
No 285
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=74.11 E-value=3.2 Score=37.36 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=22.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
++-+.+.+++|+|||.+....+. .+.. .+.+++++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~-~l~~---~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN-YYAE---LGYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH---CCCeEEEEe
Confidence 34578899999999987543222 2222 234677763
No 286
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.03 E-value=1.8 Score=39.73 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
...+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 287
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=73.63 E-value=2.6 Score=36.43 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.4
Q ss_pred CCEEEECCCCchhHHHh
Q 012434 70 RDLCINSPTGSGKTLSY 86 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~ 86 (464)
+.+++.||+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 44999999999999753
No 288
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=73.44 E-value=3.2 Score=37.63 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.|..+++.||||+|||..
T Consensus 170 ~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HTCCEEEEESTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478999999999999974
No 289
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=73.42 E-value=4.3 Score=34.05 Aligned_cols=77 Identities=10% Similarity=0.204 Sum_probs=48.2
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcccc------cccCCCCC
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM------TRGMDVEG 403 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~~------~~Gidip~ 403 (464)
.+.++||.++++..+..+++.+++.. ..+..+..++|+.+..+.... +. +.+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 34589999999999999988887653 234677888888765443222 22 37899999521 23456667
Q ss_pred CCeEEEecC
Q 012434 404 VNNVVNYDK 412 (464)
Q Consensus 404 ~~~vi~~~~ 412 (464)
++++|+...
T Consensus 156 ~~~iViDEa 164 (224)
T 1qde_A 156 IKMFILDEA 164 (224)
T ss_dssp CCEEEEETH
T ss_pred CcEEEEcCh
Confidence 888887654
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.41 E-value=2.5 Score=37.76 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=23.8
Q ss_pred HhHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 012434 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 57 ~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~ 87 (464)
.++..+.-.+..|..+.+.||+|+|||...-
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHH
Confidence 4566665566678889999999999997533
No 291
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=73.38 E-value=2.2 Score=36.03 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.|++|+|||..+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35679999999999998644
No 292
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=73.31 E-value=4.1 Score=36.40 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=23.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+.-+.+.||+|+|||...- .+..+... .+.++++..
T Consensus 102 g~vi~lvG~nGsGKTTll~--~Lagll~~--~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA--KLGRYYQN--LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH--HHHHHHHT--TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHH--HHHHHHHh--cCCEEEEEe
Confidence 4567889999999998643 33333332 234677664
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=73.17 E-value=1.5 Score=35.37 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.7
Q ss_pred CEEEECCCCchhHHHh
Q 012434 71 DLCINSPTGSGKTLSY 86 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~ 86 (464)
-+++.|++|+|||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999854
No 294
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.14 E-value=2.6 Score=43.12 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=30.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHH--CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHH
Q 012434 25 EDCPLDHLPCLDPRLKVALQN--MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 25 ~~~~~~~~~~l~~~i~~~~~~--~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~ 85 (464)
.+..|+++-|+++.+...-+. +....|..++.. .+...+.+++.||+|+|||+.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~-------g~~~p~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAI-------GVKPPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSC-------CCCCCCEEEEECCTTSCHHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhc-------CCCCCCeEEEECCCCCCHHHH
Confidence 345566666776655444332 122223222211 112347799999999999985
No 295
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=73.03 E-value=2.4 Score=35.30 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.1
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.+.-+.+.||+|+|||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456688999999999974
No 296
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=72.52 E-value=2.2 Score=36.07 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.0
Q ss_pred CCCCCCEEEECCCCchhHHH
Q 012434 66 GLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~ 85 (464)
+..|.-+.+.||+|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44578889999999999984
No 297
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=72.45 E-value=4.8 Score=37.16 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=23.6
Q ss_pred HHhHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 012434 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 56 ~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~ 87 (464)
.++++- +-.+..|+.+.+.+|+|+|||....
T Consensus 162 iraID~-~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 162 ARVLDL-ASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHH-HSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred ceeeee-eeeecCCcEEEEecCCCCChhHHHH
Confidence 344443 5567789999999999999998654
No 298
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=72.44 E-value=1.8 Score=35.50 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.8
Q ss_pred CCEEEECCCCchhHHH
Q 012434 70 RDLCINSPTGSGKTLS 85 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~ 85 (464)
+-+++.||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999984
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=72.42 E-value=2.1 Score=34.22 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
.+++++.|+.|||||.++-
T Consensus 7 ~~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp -CEEEEESCTTSSHHHHHH
T ss_pred cceEEEECCCCCCHHHHHH
Confidence 4789999999999998644
No 300
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=72.30 E-value=2.7 Score=35.41 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
..+-+++.||+|+||+..+-
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 44667889999999998654
No 301
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=72.26 E-value=4.1 Score=38.44 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=23.5
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
..+++.+++|+|||..+...+...... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~----G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR----GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH----HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEe
Confidence 478899999999998755433333222 23677775
No 302
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=72.24 E-value=2.8 Score=36.91 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=18.9
Q ss_pred CCCCCEEEECCCCchhHHHhHHHH
Q 012434 67 LFERDLCINSPTGSGKTLSYALPI 90 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~~~~~~ 90 (464)
..|.-+++.||+|+|||..+...+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 357889999999999998755433
No 303
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.12 E-value=2 Score=38.62 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.9
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
..+++.||||+|||..+.
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999998644
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=72.09 E-value=2.3 Score=35.24 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.||+|+|||..+-
T Consensus 29 g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999998533
No 305
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=71.89 E-value=38 Score=29.36 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=40.0
Q ss_pred CCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHH
Q 012434 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144 (464)
Q Consensus 78 tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 144 (464)
..+||... +.-++..+.. .+.++||.+.+...+..+.+.+... .|+++..++|+.+...+
T Consensus 93 ~~s~K~~~-L~~ll~~~~~---~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R 152 (271)
T 1z5z_A 93 RRSGKMIR-TMEIIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKER 152 (271)
T ss_dssp TTCHHHHH-HHHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHH
T ss_pred ccCHHHHH-HHHHHHHHHh---CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHH
Confidence 45778764 2334433332 3458999999998888777777652 26778888998876554
No 306
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=71.87 E-value=1.4 Score=35.42 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.|.-+.+.||+|+|||..
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 366788999999999985
No 307
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=71.81 E-value=4 Score=36.39 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=23.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
.+.-+.+.||+|+|||...- .+..+... .+.++++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~--~Lag~l~~--~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLG--KLAHRLKN--EGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHH--HHHHHHHH--TTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHH--HHHHHHHH--cCCeEEEEe
Confidence 34567899999999998643 33333332 234677764
No 308
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=71.65 E-value=2.3 Score=35.47 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.|+.|+|||..+-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46778999999999998644
No 309
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=71.43 E-value=2.4 Score=35.29 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.|.-+.+.||+|+|||..
T Consensus 19 ~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp CCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999974
No 310
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.36 E-value=4.1 Score=41.70 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHh
Q 012434 69 ERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~ 86 (464)
.+.+++.||+|+|||+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSCCEEESSTTSSHHHHH
T ss_pred CceEEEecCCCCCchHHH
Confidence 467999999999999753
No 311
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=71.23 E-value=2.5 Score=36.11 Aligned_cols=26 Identities=15% Similarity=-0.181 Sum_probs=19.5
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHH
Q 012434 66 GLFERDLCINSPTGSGKTLSYALPIV 91 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l 91 (464)
+..|.-+.+.+|+|+|||..+...+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 33467789999999999987554333
No 312
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=71.18 E-value=2.1 Score=35.63 Aligned_cols=22 Identities=32% Similarity=0.152 Sum_probs=17.0
Q ss_pred CCCCCCCCEEEECCCCchhHHH
Q 012434 64 GPGLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 64 ~~~~~~~~~li~~~tG~GKT~~ 85 (464)
..+..+.-+.+.|++|+|||..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHH
Confidence 3444466788999999999985
No 313
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=71.15 E-value=2 Score=38.71 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
...+++.||+|+|||..+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4789999999999998643
No 314
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=73.66 E-value=0.85 Score=36.76 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=48.0
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhh-cCCcEEEeC
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiI~T 179 (464)
+.++||.++++.-+..+++.+... ++.+..++|+.+...+... .+.+. ...+|+|+|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~------------------~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEA------------------IKRLTEGRVNVLVAT 87 (170)
Confidence 347999999999888888777664 6788888887655443211 11222 336799998
Q ss_pred chHHHHhhhcCCCcCCCCccEEEEeh
Q 012434 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iIvDE 205 (464)
. .+ . .++++.++++||.-+
T Consensus 88 ~-~~----~--~Gid~~~~~~Vi~~~ 106 (170)
T 2yjt_D 88 D-VA----A--RGIDIPDVSHVFNFD 106 (170)
Confidence 2 21 1 235566666666533
No 315
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=70.95 E-value=3.1 Score=38.35 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5789999999999998643
No 316
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=70.85 E-value=2.6 Score=49.25 Aligned_cols=52 Identities=21% Similarity=0.135 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 012434 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 35 l~~~i~~~~~~~~~~~l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~ 87 (464)
+.+.+.+.+.+.++. +.+.+..-...+++.+.....+++.||||+|||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 445677777777874 5555533333334433346779999999999998754
No 317
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=70.43 E-value=2.6 Score=35.48 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||..+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999998644
No 318
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=70.42 E-value=2.4 Score=35.14 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
...+++.|++|+|||..+-
T Consensus 18 ~~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SSCEEEECSTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578999999999998543
No 319
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=70.28 E-value=2.3 Score=34.22 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+.+.|++|+|||..+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5668999999999998543
No 320
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=70.24 E-value=2.4 Score=38.43 Aligned_cols=18 Identities=39% Similarity=0.285 Sum_probs=14.7
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.-+++.||||+|||..+.
T Consensus 8 ~lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCcCcHHHHHH
Confidence 357899999999998644
No 321
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=70.21 E-value=2.6 Score=38.29 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
..+++.||+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999998533
No 322
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=69.98 E-value=21 Score=34.29 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=49.9
Q ss_pred cEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-hcCCcEEEeCch
Q 012434 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPG 181 (464)
Q Consensus 103 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiI~T~~ 181 (464)
..++++.+..-+..+.+.+... +.++..++|+.+...+. .+.+.. ....+|+|+|++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~------------------~i~~~f~~g~~~vLv~T~~ 406 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRN------------------IMKTLAENGKGIIIVASYG 406 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHH------------------HHHHHHHHCCSCEEEEEHH
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHH------------------HHHHHHhCCCCCEEEEEcC
Confidence 4555555565555555555544 45889999987755442 222223 344689999977
Q ss_pred HHHHhhhcCCCcCCCCccEEEEehhh
Q 012434 182 RLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
.+.. ++++.++++||+....
T Consensus 407 ~~~~------GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 407 VFST------GISVKNLHHVVLAHGV 426 (510)
T ss_dssp HHHH------SCCCCSEEEEEESSCC
T ss_pred hhhc------ccccccCcEEEEeCCC
Confidence 7643 3667789999988776
No 323
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=69.85 E-value=2.3 Score=40.39 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
.+.+++.||+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 324
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=69.85 E-value=2.3 Score=40.47 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.+++++||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 579999999999998643
No 325
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=69.80 E-value=3.1 Score=39.80 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
...++++.||+|+|||..+-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 35689999999999998644
No 326
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=69.42 E-value=2.4 Score=35.11 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+.+.||+|+|||..+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 36678899999999998643
No 327
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=69.36 E-value=2.4 Score=35.93 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHh
Q 012434 69 ERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~ 86 (464)
+..+++.|++|+|||..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999864
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=69.23 E-value=2.9 Score=35.25 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+.+.||+|+|||..+-
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568899999999998543
No 329
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=69.21 E-value=3.9 Score=35.85 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.4
Q ss_pred CCEEEECCCCchhHHHh
Q 012434 70 RDLCINSPTGSGKTLSY 86 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~ 86 (464)
+.+++.||+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34999999999999753
No 330
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=69.19 E-value=2.6 Score=34.48 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.|++|+|||.++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999998644
No 331
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=69.04 E-value=2.3 Score=40.90 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
....+++.||+|+|||..+
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3577999999999999854
No 332
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=69.02 E-value=23 Score=34.27 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=53.8
Q ss_pred chhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhcccccccccc
Q 012434 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159 (464)
Q Consensus 80 ~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (464)
++|.....- ++...... ..+.++||.++++.-++.+.+.+.......++.+..++|.......... ..
T Consensus 370 ~~k~~~l~~-~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~ 437 (555)
T 3tbk_A 370 NPKLRDLYL-VLQEEYHL-KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGM----------TL 437 (555)
T ss_dssp CHHHHHHHH-HHHHHHHH-CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------
T ss_pred CHHHHHHHH-HHHHHhcc-CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCccccccc----------CH
Confidence 456654322 33332222 2345899999999999999999987654334666666663221100000 00
Q ss_pred CCchhHHHhhhc--CCcEEEeCchHHHHhhhcCCCcCCCCccEEEE
Q 012434 160 YDPEDVLQELQS--AVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (464)
Q Consensus 160 ~~~~~~~~~~~~--~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIv 203 (464)
.....+.+.+.. ..+|+|+|- .+ ..++++.++++||.
T Consensus 438 ~~R~~~~~~F~~~g~~~vLvaT~-----~~--~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 438 PAQKCVLEAFRASGDNNILIATS-----VA--DEGIDIAECNLVIL 476 (555)
T ss_dssp --------------CCSEEEECC-----CT--TCCEETTSCSEEEE
T ss_pred HHHHHHHHHHhcCCCeeEEEEcc-----hh--hcCCccccCCEEEE
Confidence 001223333333 478999993 11 24577888888875
No 333
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=68.96 E-value=31 Score=33.11 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=23.5
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcc
Q 012434 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P 109 (464)
..+++.+++|+|||.++.-.+. .+.. .+.+++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~-~l~~---~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAY-YYQR---KGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-HHHH---TTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHh---CCCeEEEEec
Confidence 3578899999999987554332 2322 2446777764
No 334
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=68.67 E-value=3.8 Score=36.91 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=18.8
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHH
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQ 92 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~ 92 (464)
.+.-+++.|++|+|||..++-.+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3466899999999999875544443
No 335
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=68.61 E-value=7 Score=39.52 Aligned_cols=78 Identities=17% Similarity=0.335 Sum_probs=49.2
Q ss_pred CccEEEEcccHHHHHHHHHHHHHh--ccccCceEEEeecC--------CchhHHHHHhhccccccccccCCchhHHHhhh
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAI--APAVGLSVGLAVGQ--------SSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~--~~~~~~~v~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (464)
+.++||.++++..++.+++.+... +...|+++..++|+ .+...+. .+.+.+.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~------------------~~~~~F~ 461 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQK------------------EVISKFR 461 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHH------------------HHHHHHC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHH------------------HHHHHHh
Confidence 558999999999999999888864 22336888999998 4444332 2223333
Q ss_pred c-CCcEEEeCchHHHHhhhcCCCcCCCCccEEEE
Q 012434 171 S-AVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (464)
Q Consensus 171 ~-~~~IiI~T~~~l~~~l~~~~~~~~~~~~~iIv 203 (464)
. ..+|+|+|- ....++++.++++||.
T Consensus 462 ~g~~~VLVaT~-------~~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 462 TGKINLLIATT-------VAEEGLDIKECNIVIR 488 (699)
T ss_dssp C---CCSEEEC-------SCCTTSCCCSCCCCEE
T ss_pred cCCCcEEEEcc-------ccccCCccccCCEEEE
Confidence 3 368999993 1234577888888874
No 336
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=68.60 E-value=4.4 Score=36.05 Aligned_cols=75 Identities=9% Similarity=0.177 Sum_probs=50.4
Q ss_pred CCeEEEEecChhhHHHHHHHHhhcCc--cceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-c-----c-ccCCCC
Q 012434 332 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----T-RGMDVE 402 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~-----~-~Gidip 402 (464)
+.++||.+++++.|..+.+.++..+. .+..+....++...... .....+|||+|+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 34799999999999999888877643 24566666666543221 1345689999963 1 1 346777
Q ss_pred CCCeEEEecCC
Q 012434 403 GVNNVVNYDKP 413 (464)
Q Consensus 403 ~~~~vi~~~~~ 413 (464)
.+.++|+-...
T Consensus 235 ~l~~lVlDEad 245 (300)
T 3fmo_B 235 KIKVFVLDEAD 245 (300)
T ss_dssp GCSEEEETTHH
T ss_pred hceEEEEeCHH
Confidence 88888876543
No 337
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=68.42 E-value=2.8 Score=33.99 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=13.1
Q ss_pred CEEEECCCCchhHHH
Q 012434 71 DLCINSPTGSGKTLS 85 (464)
Q Consensus 71 ~~li~~~tG~GKT~~ 85 (464)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999985
No 338
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=68.38 E-value=6.1 Score=32.00 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.|++|+|||..+-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668899999999998644
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=68.17 E-value=1.9 Score=35.29 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||..+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3558899999999998643
No 340
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=67.99 E-value=2.4 Score=36.07 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=11.8
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
.|.-+.+.||+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999853
No 341
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=67.85 E-value=3.3 Score=33.24 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
+.+++.+++|+|||..+-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 468999999999998643
No 342
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=67.80 E-value=3.6 Score=33.32 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
..+++.|++|+|||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999998643
No 343
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=67.66 E-value=5.2 Score=33.19 Aligned_cols=78 Identities=12% Similarity=0.170 Sum_probs=47.3
Q ss_pred CCeEEEEecChhhHHH-HHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-c----cc-------c
Q 012434 332 EEKCIVFTSSVESTHR-LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----TR-------G 398 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~----~~-------G 398 (464)
+.++||.+++...+.. +.+.+......++.+..++|+.....+...+. +..+|+|+|.- + .. +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 6789999999988887 66666665444577888888765432221111 13689999852 2 12 2
Q ss_pred CCCCCCCeEEEecCC
Q 012434 399 MDVEGVNNVVNYDKP 413 (464)
Q Consensus 399 idip~~~~vi~~~~~ 413 (464)
+.+.++++||+....
T Consensus 158 ~~~~~~~~iIiDEah 172 (216)
T 3b6e_A 158 VQLSDFSLIIIDECH 172 (216)
T ss_dssp CCGGGCSEEEETTC-
T ss_pred cchhcccEEEEECch
Confidence 555667777775544
No 344
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=67.64 E-value=3.9 Score=32.65 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
+.+++.|++|+|||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999998643
No 345
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=67.51 E-value=3.1 Score=38.66 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
-+++.||||+|||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 46889999999997644
No 346
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=67.49 E-value=2.6 Score=35.61 Aligned_cols=22 Identities=23% Similarity=-0.064 Sum_probs=17.3
Q ss_pred CCCCCCEEEECCCCchhHHHhH
Q 012434 66 GLFERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~ 87 (464)
+..|.-+.+.+|+|+|||..+.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 3346778999999999998644
No 347
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=67.46 E-value=6.2 Score=35.49 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=13.3
Q ss_pred CEEEECCCCchhHHHh
Q 012434 71 DLCINSPTGSGKTLSY 86 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~ 86 (464)
-+.+.||+|+|||..+
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999853
No 348
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=67.45 E-value=3.6 Score=35.50 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=16.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||.++-
T Consensus 48 g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TCCEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 8899999999999998643
No 349
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=67.44 E-value=8 Score=35.93 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=46.4
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhc-CCcEEEe
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVA 178 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiI~ 178 (464)
...++||.++++.-++.+++.+... ++.+..++|+.+...+.. +.+.+.. ..+|+|+
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~------------------~~~~f~~g~~~vlv~ 336 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDV------------------IMREFRSGSSRVLIT 336 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHH------------------HHHHHSCC---CEEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHH------------------HHHHHHcCCCcEEEE
Confidence 3447999999999988888877764 678889999876655422 2223333 3689999
Q ss_pred CchHHHHhhhcCCCcCCCCccEEEEeh
Q 012434 179 TPGRLMDHINATRGFTLEHLCYLVVDE 205 (464)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iIvDE 205 (464)
|. .+ ..++++.++++||.-.
T Consensus 337 T~-----~~--~~Gidip~v~~Vi~~~ 356 (414)
T 3eiq_A 337 TD-----LL--ARGIDVQQVSLVINYD 356 (414)
T ss_dssp CS-----SC--C--CCGGGCSCEEESS
T ss_pred CC-----cc--ccCCCccCCCEEEEeC
Confidence 93 11 2346677777777533
No 350
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=67.39 E-value=3.4 Score=35.13 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||.++-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4679999999999998644
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=67.35 E-value=3.4 Score=34.07 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||..+-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998643
No 352
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=67.24 E-value=5.7 Score=36.37 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=23.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+.-+.+.||+|+|||...- .+..+... .+.++++..
T Consensus 157 g~vi~lvG~nGsGKTTll~--~Lag~l~~--~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG--KLAHRLKN--EGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH--HHHHHHHH--TTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHH--HHHhhccc--cCCEEEEec
Confidence 4568899999999998643 33333332 234677764
No 353
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=67.23 E-value=2.2 Score=38.89 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHh
Q 012434 69 ERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~ 86 (464)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999853
No 354
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=67.02 E-value=3.8 Score=34.18 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.6
Q ss_pred CEEEECCCCchhHHHhHH
Q 012434 71 DLCINSPTGSGKTLSYAL 88 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~ 88 (464)
.+++.||+|+||+..+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999986543
No 355
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=66.84 E-value=3.8 Score=38.69 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHh
Q 012434 69 ERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~ 86 (464)
..++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 478999999999999854
No 356
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=66.79 E-value=3.1 Score=34.80 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=14.2
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
.+++.|++|+|||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998644
No 357
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=66.75 E-value=3.3 Score=33.77 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=14.4
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.-+++.||+|+|||..+-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 446889999999998533
No 358
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=66.73 E-value=4.2 Score=37.52 Aligned_cols=30 Identities=20% Similarity=0.049 Sum_probs=21.3
Q ss_pred HhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 012434 57 AVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 57 ~~~~~i~~~~~~~~~~li~~~tG~GKT~~~ 86 (464)
.++..+.-.+..+..+++.||+|+|||...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHH
Confidence 344444334556778999999999999753
No 359
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=66.72 E-value=2.9 Score=38.16 Aligned_cols=45 Identities=9% Similarity=-0.226 Sum_probs=27.2
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhh--ccCCccEEEEccc
Q 012434 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPT 110 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~--~~~~~~~lil~P~ 110 (464)
+..|.-+++.||+|+|||..++..+....... +..+.+++++.-.
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 33456689999999999987554444322210 0023468888643
No 360
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=66.58 E-value=3.9 Score=33.54 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
|..+.+.+|+|+|||...-
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 3467899999999998543
No 361
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=66.26 E-value=17 Score=34.29 Aligned_cols=68 Identities=19% Similarity=0.121 Sum_probs=45.3
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhh-hcCCcEEEeC
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiI~T 179 (464)
+.++||.+|++.-++.+++.++.. +.++..++|... ....+.+ ....+|+|+|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R----------------------~~~~~~F~~g~~~vLVaT 230 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTF----------------------EREYPTIKQKKPDFILAT 230 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSC----------------------C--------CCCSEEEES
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhH----------------------HHHHhhhcCCCceEEEEC
Confidence 447999999999999988888875 688999999321 1111222 2347999999
Q ss_pred chHHHHhhhcCCCcCCCCccEEE
Q 012434 180 PGRLMDHINATRGFTLEHLCYLV 202 (464)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iI 202 (464)
. .+. .++++. +++||
T Consensus 231 ~-----v~e--~GiDip-v~~VI 245 (440)
T 1yks_A 231 D-----IAE--MGANLC-VERVL 245 (440)
T ss_dssp S-----STT--CCTTCC-CSEEE
T ss_pred C-----hhh--eeeccC-ceEEE
Confidence 3 222 346676 77776
No 362
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=66.23 E-value=3.2 Score=34.71 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.2
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
.+++.|++|+|||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 363
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=66.21 E-value=3.8 Score=37.51 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=22.0
Q ss_pred hhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 54 VQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 54 ~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
-|.++|..+ +..+..|.| ++.-|.||+|||.+.
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 466665543 233345766 677999999999973
No 364
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=66.01 E-value=3.5 Score=34.36 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.|+.|+|||..+-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999998644
No 365
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=65.97 E-value=3.2 Score=34.48 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||..+-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4568899999999998644
No 366
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=65.91 E-value=2.4 Score=37.54 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=14.9
Q ss_pred CCCEEEECCCCchhHHHh
Q 012434 69 ERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~ 86 (464)
+.-+++.||+|+|||..+
T Consensus 33 ~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 355889999999999853
No 367
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=65.88 E-value=2.1 Score=34.60 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=11.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4668899999999998643
No 368
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=65.80 E-value=2.3 Score=36.96 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||..+-
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 4568999999999998644
No 369
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=65.71 E-value=1.3 Score=45.58 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.8
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998644
No 370
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=65.44 E-value=4.5 Score=32.80 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=23.3
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 012434 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (464)
+++.|++|||||.-+.- +... +.+++++......-..+.+.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~~---~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIGD---APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHCS---CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHH-----HHhc---CCCeEEEecCCCCCHHHHHHHHH
Confidence 58999999999974321 1111 23578887654433334444443
No 371
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=65.21 E-value=2.7 Score=33.39 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=14.1
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
.+++.|++|+|||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 372
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=65.20 E-value=2.9 Score=38.60 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.4
Q ss_pred CEEEECCCCchhHHHh
Q 012434 71 DLCINSPTGSGKTLSY 86 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~ 86 (464)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999864
No 373
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=64.86 E-value=5.6 Score=35.76 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=13.0
Q ss_pred CEEEECCCCchhHHH
Q 012434 71 DLCINSPTGSGKTLS 85 (464)
Q Consensus 71 ~~li~~~tG~GKT~~ 85 (464)
-+++.|+.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 468899999999984
No 374
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=64.76 E-value=6 Score=35.73 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=22.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+.-+.+.||+|+|||...- .+..+... .+.++++..
T Consensus 129 g~vi~lvG~nGaGKTTll~--~Lag~l~~--~~g~V~l~g 164 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIA--KLANWLKN--HGFSVVIAA 164 (328)
T ss_dssp SEEEEEECCTTSSHHHHHH--HHHHHHHH--TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHH--HHHHHHHh--cCCEEEEEe
Confidence 4568899999999998643 33333332 233566663
No 375
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=64.75 E-value=4.7 Score=36.33 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=22.3
Q ss_pred chhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 52 ~~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
..-|.+++..+ +..+..|.| ++.-|.||+|||.+.
T Consensus 55 ~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 34466555443 222334766 677999999999973
No 376
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=64.74 E-value=3.3 Score=33.70 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.2
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
.+++.|++|+|||..+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 377
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=64.68 E-value=8.5 Score=33.33 Aligned_cols=52 Identities=6% Similarity=-0.130 Sum_probs=30.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (464)
.+..+++.+++|+|||..++-.+.+.+. ++.++++++-... ..++.+.++.+
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~----~Ge~~~~~~~~e~-~~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLK----SDNLVGMFSISYP-LQLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHH----TTCEEEEEECSSC-HHHHHHHHHHT
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHH----CCCcEEEEEEeCC-HHHHHHHHHHc
Confidence 4566788878888888443333333333 3457888875433 33455556555
No 378
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=64.66 E-value=5.3 Score=39.03 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.||+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57789999999999998533
No 379
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=64.54 E-value=2.9 Score=35.77 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=16.2
Q ss_pred CCCCCCEEEECCCCchhHH
Q 012434 66 GLFERDLCINSPTGSGKTL 84 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~ 84 (464)
+..|.-+.+.||+|+|||.
T Consensus 28 i~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3457888999999999997
No 380
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=64.42 E-value=3.4 Score=33.30 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+.+.|++|+|||.++-
T Consensus 5 g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5668899999999998643
No 381
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.08 E-value=6.1 Score=35.28 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=14.9
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
.++++.||+|+|||..+-
T Consensus 43 ~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 349999999999998643
No 382
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.04 E-value=3.9 Score=39.71 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.5
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
+.+++.||+|+|||..+-
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 679999999999998644
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=63.91 E-value=3.1 Score=34.09 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=13.7
Q ss_pred EEEECCCCchhHHHhH
Q 012434 72 LCINSPTGSGKTLSYA 87 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~ 87 (464)
+++.|+.|+|||.++-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998644
No 384
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=63.89 E-value=17 Score=33.24 Aligned_cols=77 Identities=10% Similarity=0.222 Sum_probs=53.7
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-----c-cccCCCCC
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEG 403 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-----~-~~Gidip~ 403 (464)
.+.++||.++++..+..+++.+.+.. ..+..+..++|+.+..+....+. +.+|+|+|.- + ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 45689999999999999888887653 33577888899888765544433 3689999942 1 22345566
Q ss_pred CCeEEEecC
Q 012434 404 VNNVVNYDK 412 (464)
Q Consensus 404 ~~~vi~~~~ 412 (464)
++++|+...
T Consensus 163 ~~~vIiDEa 171 (394)
T 1fuu_A 163 IKMFILDEA 171 (394)
T ss_dssp CCEEEEETH
T ss_pred CcEEEEECh
Confidence 777777553
No 385
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=63.87 E-value=6.8 Score=43.64 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=30.4
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012434 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
+..+..+++.+|+|+|||..++..+...+.. +.+++|++-.
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~~----G~~vlYI~te 71 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 71 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhC----CCceEEEEec
Confidence 4457889999999999998766655555543 3478888744
No 386
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=63.79 E-value=8.5 Score=34.43 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=16.4
Q ss_pred CCCCCCEEEECCCCchhHHHh
Q 012434 66 GLFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~~ 86 (464)
...+.-+.+.||+|+|||..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHH
Confidence 344566889999999999853
No 387
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=63.74 E-value=5.6 Score=31.04 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=13.6
Q ss_pred CCEEEECCCCchhHHH
Q 012434 70 RDLCINSPTGSGKTLS 85 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~ 85 (464)
.-.++.||+|+|||..
T Consensus 24 g~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3468899999999985
No 388
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=63.73 E-value=3.1 Score=34.36 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.4
Q ss_pred CCEEEECCCCchhHHHh
Q 012434 70 RDLCINSPTGSGKTLSY 86 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~ 86 (464)
..+++.|++|+|||.++
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45789999999999864
No 389
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=63.41 E-value=3.5 Score=34.63 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||.++-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998644
No 390
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=63.39 E-value=4 Score=33.58 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
.+++.|++|+|||..+-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 46899999999998543
No 391
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=63.37 E-value=3.7 Score=33.69 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||..+-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4668999999999998643
No 392
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=63.27 E-value=3.7 Score=33.37 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.9
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
..+++.|++|+|||.++-
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458899999999998643
No 393
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=63.25 E-value=5.1 Score=36.56 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=22.7
Q ss_pred chhhHHhHHh----hhCCCCCCCC--EEEECCCCchhHHHh
Q 012434 52 FPVQVAVWQE----TIGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 52 ~~~Q~~~~~~----i~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
..-|.+++.. ++..+..|.| ++.-|.||+|||.+.
T Consensus 58 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 58 SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 3456666553 2233445766 577999999999973
No 394
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=62.82 E-value=4.6 Score=37.05 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.7
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
..+++.||+|+|||..+-
T Consensus 39 ~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp SEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347999999999998643
No 395
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=62.80 E-value=4.5 Score=38.68 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHh
Q 012434 69 ERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~ 86 (464)
.+.+++.||+|+|||..+
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999853
No 396
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=62.80 E-value=9 Score=40.86 Aligned_cols=80 Identities=9% Similarity=0.243 Sum_probs=59.3
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcC-ccce----eEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-ccccCC-CCC
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRI----KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMD-VEG 403 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~~~Gid-ip~ 403 (464)
.+.++||.+++++.+..+++.+++.. ..+. .+..++|+.+..++.+..+.+.. .+|+|+|+- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 46789999999999999988887653 2235 78899999998887777777776 899999962 222222 556
Q ss_pred CCeEEEecC
Q 012434 404 VNNVVNYDK 412 (464)
Q Consensus 404 ~~~vi~~~~ 412 (464)
++++|+...
T Consensus 176 l~~lViDEa 184 (1054)
T 1gku_B 176 FDFIFVDDV 184 (1054)
T ss_dssp CSEEEESCH
T ss_pred CCEEEEeCh
Confidence 777776543
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=62.70 E-value=3.1 Score=34.93 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+.+.|++|||||.++-
T Consensus 4 ~~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999998543
No 398
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=62.67 E-value=11 Score=30.18 Aligned_cols=35 Identities=20% Similarity=-0.014 Sum_probs=21.1
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
.-+.+.++.|+|||... ..++..+.. .+.++-++.
T Consensus 5 ~~i~i~G~sGsGKTTl~-~~L~~~l~~---~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLM-EKWVAAAVR---EGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHHHHH---TTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHH-HHHHHhhHh---cCCeeeEEE
Confidence 45788999999999753 334444433 233455554
No 399
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=62.66 E-value=5.3 Score=36.49 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=24.1
Q ss_pred cchhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 51 l~~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
+..-|.+++..+ +..+..|.| ++.-|.||+|||.+.
T Consensus 82 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 82 ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 344577666543 334445766 577999999999973
No 400
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=62.65 E-value=6.1 Score=44.74 Aligned_cols=48 Identities=19% Similarity=0.094 Sum_probs=33.8
Q ss_pred HHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEccc
Q 012434 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (464)
Q Consensus 59 ~~~i~~--~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~ 110 (464)
++.++. -+..+.++++.+|+|+|||..+...+.+.... +.+++|++-.
T Consensus 1069 Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~----Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1069 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 1118 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTT
T ss_pred HHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEEcc
Confidence 345552 45567899999999999998866555555543 4478888743
No 401
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=62.64 E-value=5.4 Score=36.00 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=15.3
Q ss_pred CCCC--EEEECCCCchhHHHh
Q 012434 68 FERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~--~li~~~tG~GKT~~~ 86 (464)
.|.| ++.-|.||+|||.+.
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 78 DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCEEEEEeECCCCCCCcEEE
Confidence 3766 677999999999873
No 402
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=62.60 E-value=3.5 Score=34.33 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=14.8
Q ss_pred CCCEEEECCCCchhHHHh
Q 012434 69 ERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~ 86 (464)
+.-+.+.||+|+|||..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 456789999999999853
No 403
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=62.52 E-value=5.3 Score=36.59 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=23.0
Q ss_pred cchhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 51 l~~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
+..-|.+++..+ +..+..|.| ++.-|.||+|||.+.
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 344566665543 222334765 577999999999973
No 404
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=62.46 E-value=5.4 Score=36.32 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=23.2
Q ss_pred cchhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 51 l~~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
+..-|.+++..+ +..+..|.| ++.-|.||+|||.+.
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 444566665542 222334765 577999999999873
No 405
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=62.42 E-value=3.4 Score=33.72 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.6
Q ss_pred EEEECCCCchhHHHhH
Q 012434 72 LCINSPTGSGKTLSYA 87 (464)
Q Consensus 72 ~li~~~tG~GKT~~~~ 87 (464)
+.+.|+.|+|||..+-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998643
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=62.33 E-value=3.2 Score=34.61 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+..+++.|++|+|||..+-
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36678899999999998643
No 407
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=62.32 E-value=7.4 Score=34.52 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=22.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
++.+.+.+++|+|||..+...+. .... .+.+++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~--~~~~--~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL--YYKG--KGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH--HHHH--TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHH--cCCeEEEec
Confidence 45677789999999986543222 2221 234677764
No 408
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=62.25 E-value=4.4 Score=33.55 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=13.6
Q ss_pred CEEEECCCCchhHHHh
Q 012434 71 DLCINSPTGSGKTLSY 86 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~ 86 (464)
.+.+.|+.|+|||.++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999853
No 409
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=62.20 E-value=4.7 Score=34.80 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
.+..+.+.||+|+|||..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999853
No 410
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=62.16 E-value=6.2 Score=35.06 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=22.4
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+..+++.+++|+|||..+...+.. +.. .+.+++++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~-~~~---~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF-YKK---KGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH-HHH---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH---CCCeEEEEe
Confidence 345778899999999865543322 222 234677764
No 411
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=62.16 E-value=7.6 Score=36.59 Aligned_cols=36 Identities=22% Similarity=0.085 Sum_probs=23.1
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+.+++.++.|+|||.+..-.+...... .+.+++++.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~---~G~kVllvd 136 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREK---HKKKVLVVS 136 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT---SCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh---cCCeEEEEe
Confidence 457778999999998765433332222 144777774
No 412
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=62.09 E-value=5.5 Score=36.19 Aligned_cols=36 Identities=28% Similarity=0.186 Sum_probs=23.1
Q ss_pred cchhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 51 l~~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
+..-|.+++..+ +..+..|.| ++.-|.||+|||.+.
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 344566665542 223334766 577899999999973
No 413
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=62.03 E-value=2.7 Score=36.39 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.|++|+|||..+-
T Consensus 32 ~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp CEEEEEESCGGGTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998543
No 414
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=61.95 E-value=5.3 Score=37.22 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=15.4
Q ss_pred CCCC--EEEECCCCchhHHHh
Q 012434 68 FERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~--~li~~~tG~GKT~~~ 86 (464)
.|.| ++.-|.||+|||.+.
T Consensus 138 ~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 138 DGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp TTCCEEEEEESCTTSSHHHHH
T ss_pred CCcceEEEEECCCCCCCceEe
Confidence 4766 567899999999984
No 415
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=61.86 E-value=5.1 Score=36.82 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=22.7
Q ss_pred cchhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 51 l~~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
+..-|.+++..+ +..+..|.| ++.-|.||+|||.+.
T Consensus 78 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 78 WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 344566665542 222334765 567999999999873
No 416
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=61.85 E-value=3.4 Score=35.33 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=16.2
Q ss_pred CCCCCEEEECCCCchhHHH
Q 012434 67 LFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~ 85 (464)
..|.-+.+.||+|+|||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999973
No 417
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=61.79 E-value=8.2 Score=36.94 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=22.4
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEE
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil 107 (464)
+.-+.+.|++|+|||...- .+..+... .+.++++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~--~LAgll~~--~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIG--KLARQFEQ--QGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHH--HHHHHHHH--TTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHH--HHHHHhhh--cCCeEEEe
Confidence 4567899999999998643 33333332 23467776
No 418
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=61.77 E-value=4.9 Score=31.79 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.2
Q ss_pred CCCCCCEEEECCCCchhHHH
Q 012434 66 GLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~ 85 (464)
+..|.-+.+.||.|+|||..
T Consensus 30 i~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34567788999999999974
No 419
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=61.57 E-value=5.6 Score=36.24 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=16.7
Q ss_pred CCCCCCC--EEEECCCCchhHHHh
Q 012434 65 PGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 65 ~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
.+..|.| ++.-|.||+|||.+.
T Consensus 80 ~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 80 SSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp GGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHCCcceeEEEeCCCCCCCceEe
Confidence 3345766 567899999999984
No 420
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=61.52 E-value=5.7 Score=36.46 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=22.0
Q ss_pred hhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 53 ~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
.-|.++|..+ +..+..|.| ++.-|.||+|||.+.
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3466665543 222334765 577999999999873
No 421
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=61.41 E-value=4 Score=34.08 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=14.2
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
.+++.|++|+|||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 422
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=61.29 E-value=4.4 Score=34.73 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+..+++.||+|+|||.++-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999998644
No 423
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=61.28 E-value=4 Score=43.07 Aligned_cols=66 Identities=14% Similarity=0.311 Sum_probs=36.0
Q ss_pred CCCCCCCC-CHHHHHHHHHCCCCc----cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 012434 28 PLDHLPCL-DPRLKVALQNMGISS----LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 28 ~~~~~~~l-~~~i~~~~~~~~~~~----l~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
|+..+|.+ .++..+..+.-.... ++..=..|+..+.. -..++.+++.|.+|+|||.+.-. +++.+.
T Consensus 99 Pyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~-~~~nQsIiiSGESGAGKTestK~-im~yLa 169 (1052)
T 4anj_A 99 PYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKV-LKLSQSIIVSGESGAGKTENTKF-VLRYLT 169 (1052)
T ss_dssp CSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHH-HTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHH-hCCCceEEEecCCCCCHHHHHHH-HHHHHH
Confidence 44444333 455555554322222 22223445555442 22457899999999999988655 444443
No 424
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=61.28 E-value=4.6 Score=36.67 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=22.6
Q ss_pred cchhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHH
Q 012434 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (464)
Q Consensus 51 l~~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~ 85 (464)
+..-|.+++..+ +..+..|.| ++.-|.||+|||.+
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeE
Confidence 334566665543 222334665 57799999999997
No 425
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=61.24 E-value=5.1 Score=36.45 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=17.1
Q ss_pred CCCCCCCC--EEEECCCCchhHHHh
Q 012434 64 GPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 64 ~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
..+..|.| ++.-|.||+|||.+.
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 78 QSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHhcCCceeEEEEECCCCCCCcEec
Confidence 33445766 567999999999974
No 426
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=61.08 E-value=5.3 Score=36.35 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=21.8
Q ss_pred chhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 012434 52 FPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 52 ~~~Q~~~~~~i~----~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
..-|.+++..+. ..+..|.| ++.-|.||+|||.+.
T Consensus 55 ~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp TSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 334555554332 22334765 577999999999873
No 427
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=60.82 E-value=5.5 Score=36.76 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=24.3
Q ss_pred cchhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 51 l~~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
+..-|.++|..+ +..+..|.| ++.-|.||+|||.+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 445677776643 233445766 567999999999873
No 428
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.75 E-value=5.5 Score=40.78 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
...++++.||+|+|||..+-
T Consensus 200 ~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 35689999999999998644
No 429
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=60.66 E-value=5.1 Score=37.27 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=21.9
Q ss_pred chhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 52 ~~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
..-|.++|..+ +..+..|.| ++.-|.||+|||.+.
T Consensus 132 ~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred CCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 34465555432 222334655 677999999999973
No 430
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=60.60 E-value=5.1 Score=34.33 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchhHHHh
Q 012434 69 ERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~ 86 (464)
+..+++.||+|+|||..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999853
No 431
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=60.51 E-value=5.8 Score=36.96 Aligned_cols=42 Identities=10% Similarity=-0.164 Sum_probs=25.1
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHhh--ccCCccEEEEcc
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLP 109 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~~~--~~~~~~~lil~P 109 (464)
.|.-+.+.+|+|+|||..+...++...... +..+.+++++.-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 356689999999999986553333322211 012345777754
No 432
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=60.31 E-value=77 Score=31.53 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=59.5
Q ss_pred CCchhHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhcccccccc
Q 012434 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157 (464)
Q Consensus 78 tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~ 157 (464)
..+||... +..++..+... .+.++||.+.+...++.+.+.+.. .|+.+..++|+.+...+.
T Consensus 396 ~~s~K~~~-l~~ll~~~~~~--~~~k~lIFs~~~~~~~~l~~~l~~----~g~~~~~l~G~~~~~~R~------------ 456 (644)
T 1z3i_X 396 QLSGKMLV-LDYILAMTRTT--TSDKVVLVSNYTQTLDLFEKLCRN----RRYLYVRLDGTMSIKKRA------------ 456 (644)
T ss_dssp GGSHHHHH-HHHHHHHHHHH--CCCEEEEEESCHHHHHHHHHHHHH----HTCCEEEECSSCCHHHHH------------
T ss_pred ccChHHHH-HHHHHHHHhhc--CCCEEEEEEccHHHHHHHHHHHHH----CCCCEEEEeCCCCHHHHH------------
Confidence 44788754 33344444322 345899999998877766665554 378899999998766552
Q ss_pred ccCCchhHHHhhhcC-C---cEEEeCchHHHHhhhcCCCcCCCCccEEEEehhh
Q 012434 158 ICYDPEDVLQELQSA-V---DILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 158 ~~~~~~~~~~~~~~~-~---~IiI~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
.+.+....+ . .++++| . ..+.++++...+.||+=+.+
T Consensus 457 ------~~i~~F~~~~~~~~v~L~st-~------a~g~Glnl~~a~~Vi~~d~~ 497 (644)
T 1z3i_X 457 ------KIVERFNNPSSPEFIFMLSS-K------AGGCGLNLIGANRLVMFDPD 497 (644)
T ss_dssp ------HHHHHHHSTTCCCCEEEEEG-G------GSCTTCCCTTEEEEEECSCC
T ss_pred ------HHHHHhcCCCCCcEEEEEec-c------cccCCcccccCCEEEEECCC
Confidence 222333333 1 255555 1 22345778888877765554
No 433
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=60.19 E-value=5.6 Score=36.31 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=22.1
Q ss_pred hhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 53 ~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
.-|.+++..+ +..+..|.| ++.-|.||+|||.+.
T Consensus 71 a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 71 AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred ccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4466655432 233334766 567899999999973
No 434
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=60.10 E-value=5.7 Score=36.30 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=21.4
Q ss_pred hhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 012434 54 VQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 54 ~Q~~~~~~i~----~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
-|.+++..+. ..+..|.| ++.-|.||+|||.+.
T Consensus 83 sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 83 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4655555432 22334766 566899999999973
No 435
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=60.10 E-value=3.8 Score=36.63 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=17.0
Q ss_pred CCCCCCEEEECCCCchhHHH
Q 012434 66 GLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~ 85 (464)
+..|..+.+.||+|+|||..
T Consensus 77 i~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 44678899999999999984
No 436
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=59.98 E-value=4.7 Score=36.16 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=17.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHH
Q 012434 69 ERDLCINSPTGSGKTLSYALPIV 91 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l 91 (464)
+..+++.||+|+|||..+...+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45579999999999986554333
No 437
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=59.96 E-value=10 Score=26.96 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=31.4
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCccc
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 370 (464)
+..+++++|.+-..+...+..|++.| +++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNG---VNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCC---CCEEEecccHH
Confidence 35689999999888999999999877 68888988875
No 438
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=59.88 E-value=3.5 Score=33.21 Aligned_cols=18 Identities=33% Similarity=0.242 Sum_probs=14.3
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
+.+.+.+++|+|||....
T Consensus 3 ~~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp CEEEEEESCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356789999999997543
No 439
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=59.82 E-value=5.5 Score=33.79 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+.-+++.|+.|+|||...-
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~ 44 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVIN 44 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 46778999999999998643
No 440
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=59.70 E-value=4.7 Score=34.56 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCchhHHHh
Q 012434 68 FERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~ 86 (464)
.+.-+.+.||.|+|||..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556789999999999864
No 441
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=59.27 E-value=5.9 Score=36.97 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=15.3
Q ss_pred CCCC--EEEECCCCchhHHHh
Q 012434 68 FERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~--~li~~~tG~GKT~~~ 86 (464)
.|.| ++.-|.||+|||.+.
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCeeEe
Confidence 3766 577899999999973
No 442
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=59.19 E-value=4.8 Score=33.20 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.7
Q ss_pred CEEEECCCCchhHHHh
Q 012434 71 DLCINSPTGSGKTLSY 86 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~ 86 (464)
.+.+.|++|+|||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999853
No 443
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=58.97 E-value=5.2 Score=33.57 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.3
Q ss_pred CCCCCEEEECCCCchhHHH
Q 012434 67 LFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~ 85 (464)
..|.-+.+.||.|+|||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578899999999999974
No 444
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=58.84 E-value=4.1 Score=35.40 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=16.8
Q ss_pred CCCCCCEEEECCCCchhHHH
Q 012434 66 GLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~ 85 (464)
+..|.-+.+.||+|+|||..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34578899999999999974
No 445
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=58.84 E-value=5.4 Score=33.62 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.1
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
.+++.|++|+|||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998644
No 446
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=58.71 E-value=5.4 Score=36.50 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=22.1
Q ss_pred chhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 012434 52 FPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 52 ~~~Q~~~~~~i~----~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
..-|.++|..+. ..+..|.| ++.-|.||+|||.+.
T Consensus 66 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 66 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred cCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 344655554432 22334765 677999999999873
No 447
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=58.50 E-value=1.6 Score=44.73 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.8
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
++++.||+|+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68999999999998644
No 448
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=58.46 E-value=6.1 Score=36.47 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=22.1
Q ss_pred chhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 52 ~~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
..-|.+++..+ +..+..|.+ ++.-|.||+|||.+.
T Consensus 112 ~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 112 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred CCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 34566555432 222334655 677999999999984
No 449
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=58.41 E-value=5.5 Score=32.11 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=13.2
Q ss_pred CEEEECCCCchhHHH
Q 012434 71 DLCINSPTGSGKTLS 85 (464)
Q Consensus 71 ~~li~~~tG~GKT~~ 85 (464)
-.++.||+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 568999999999975
No 450
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=58.38 E-value=10 Score=34.02 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=23.2
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
-+++.+..|+|||.++.-.+...... +.+++++-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~----G~rVLlvD 49 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARS----GKKTLVIS 49 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHC----CCcEEEEe
Confidence 35667888999999876555544332 44788885
No 451
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=58.31 E-value=4.7 Score=32.44 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
|.-+++.++.|+|||..++
T Consensus 16 G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TEEEEEEESSSSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 6779999999999997643
No 452
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=58.22 E-value=14 Score=33.47 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=21.2
Q ss_pred HhHHhhhCCCCCCCCEEEECCCCchhHHH
Q 012434 57 AVWQETIGPGLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 57 ~~~~~i~~~~~~~~~~li~~~tG~GKT~~ 85 (464)
.++..+.-....+..+.+.|++|+|||..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTL 71 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTT 71 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHH
Confidence 34555544455677789999999999974
No 453
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=58.20 E-value=6.9 Score=36.91 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=23.0
Q ss_pred hhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 012434 53 PVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 53 ~~Q~~~~~~i~----~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
.-|.++|..+. ..+..|.| ++.-|.||+|||.+.
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 45777665442 22335766 577999999999973
No 454
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=58.20 E-value=9.7 Score=27.63 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=32.0
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccH
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 371 (464)
...+++++|.+-..+...+..|++.| +.+..+.||+..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G---~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLG---LNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTT---CCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcC---CCEEEEcCcHHH
Confidence 35689999999888999999999877 688889999753
No 455
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=57.77 E-value=11 Score=27.05 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=30.8
Q ss_pred CCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCccc
Q 012434 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 370 (464)
..+++++|.+-..+...+..|++.| +.+..+.|++.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANG---IDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCC---CCeEEeCCCHH
Confidence 5689999999888999999999877 68888888874
No 456
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=57.64 E-value=12 Score=34.24 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=22.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
...+.+.|++|+|||..+.- +...+.. .+.++.++.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~-L~~~l~~---~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEA-LGMHLIE---RGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHH-HHHHHHT---TTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHH-HHHHHHh---CCCceEEEe
Confidence 34688999999999986443 2222222 234566654
No 457
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=57.39 E-value=24 Score=36.14 Aligned_cols=77 Identities=10% Similarity=0.021 Sum_probs=53.7
Q ss_pred HhhCCCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-c-----c----
Q 012434 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----T---- 396 (464)
Q Consensus 328 ~~~~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-~-----~---- 396 (464)
....+..++|.+++.+-|...++.+.... ..++.+..+.|+++..+|.... .++|+++|+- + .
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 33456789999999999998887776542 2458899999999876654432 2699999962 2 1
Q ss_pred ---ccCCCCCCCeEEEe
Q 012434 397 ---RGMDVEGVNNVVNY 410 (464)
Q Consensus 397 ---~Gidip~~~~vi~~ 410 (464)
..++...++.+|+-
T Consensus 194 ~~~~~l~lr~~~~lVlD 210 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVID 210 (844)
T ss_dssp SSGGGCCCCCCCEEEEE
T ss_pred cchhhhcccCCCEEEEC
Confidence 23555667777653
No 458
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=57.24 E-value=5.8 Score=36.47 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=21.7
Q ss_pred chhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHH
Q 012434 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (464)
Q Consensus 52 ~~~Q~~~~~~i----~~~~~~~~~--~li~~~tG~GKT~~ 85 (464)
..-|.++|..+ +..+..|.| ++.-|.||+|||.+
T Consensus 78 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCccee
Confidence 34466665542 222334655 67799999999987
No 459
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=57.07 E-value=4.6 Score=35.16 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=16.5
Q ss_pred CCCCCCEEEECCCCchhHHH
Q 012434 66 GLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~ 85 (464)
+..|.-+.+.||.|+|||..
T Consensus 29 i~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577889999999999973
No 460
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=56.65 E-value=5.5 Score=36.53 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=15.1
Q ss_pred CCCC--EEEECCCCchhHHHh
Q 012434 68 FERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 68 ~~~~--~li~~~tG~GKT~~~ 86 (464)
.|.| ++.-|.||+|||.+.
T Consensus 77 ~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 77 DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp TTCEEEEEEEECTTSSHHHHH
T ss_pred cCCceEEEEECCCCCCCeEee
Confidence 3765 567899999999873
No 461
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=56.43 E-value=4 Score=35.07 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.1
Q ss_pred CCCCCEEEECCCCchhHHH
Q 012434 67 LFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~ 85 (464)
..|.-+.+.||+|+|||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577889999999999973
No 462
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=56.41 E-value=8.8 Score=32.67 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=51.5
Q ss_pred CCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEccc-----ccc---cCCCC
Q 012434 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR---GMDVE 402 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~~-----~~~---Gidip 402 (464)
+.++||.+++++.+..+++.+++.. ..+..+..++++.....+ ......+..+|+|+|.- +.. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 4479999999999999999888753 234666667666433211 11223456799999942 212 46777
Q ss_pred CCCeEEEecC
Q 012434 403 GVNNVVNYDK 412 (464)
Q Consensus 403 ~~~~vi~~~~ 412 (464)
+++++|+...
T Consensus 175 ~~~~lViDEa 184 (245)
T 3dkp_A 175 SVEWLVVDES 184 (245)
T ss_dssp TCCEEEESSH
T ss_pred cCcEEEEeCh
Confidence 8888887654
No 463
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=56.26 E-value=8.8 Score=31.77 Aligned_cols=26 Identities=19% Similarity=-0.010 Sum_probs=17.9
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhh
Q 012434 70 RDLCINSPTGSGKTLSYALPIVQTLSNR 97 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~ 97 (464)
.-.++.||+|+|||... -++..+..+
T Consensus 24 ~~~~I~G~NgsGKStil--~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL--DAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHH--HHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHH--HHHHHHhcC
Confidence 44688999999999853 344444443
No 464
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=56.26 E-value=9 Score=35.96 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=22.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+..+.+.++.|+|||.+....+. .+.. .+.+++++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~-~l~~---~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL-YYKG---KGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH-HHHT---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH---cCCeEEEee
Confidence 34577789999999987553222 2222 244677764
No 465
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=56.16 E-value=6.3 Score=35.95 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=19.8
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCc
Q 012434 27 CPLDHLPCLDPRLKVALQNMGISS 50 (464)
Q Consensus 27 ~~~~~~~~l~~~i~~~~~~~~~~~ 50 (464)
.+++.|+++.+...+.|++.||.+
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t 58 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDT 58 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCS
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCc
Confidence 467778889999999998888865
No 466
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=56.14 E-value=6.7 Score=36.08 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=23.3
Q ss_pred cchhhHHhHHhh---hCCCCCCCC--EEEECCCCchhHHHh
Q 012434 51 LFPVQVAVWQET---IGPGLFERD--LCINSPTGSGKTLSY 86 (464)
Q Consensus 51 l~~~Q~~~~~~i---~~~~~~~~~--~li~~~tG~GKT~~~ 86 (464)
+..-|.+++..+ +..+..|.| ++.-|.||+|||.+.
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred CcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 344566655433 333445766 567899999999873
No 467
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=56.09 E-value=6.7 Score=32.19 Aligned_cols=18 Identities=17% Similarity=0.291 Sum_probs=14.5
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
..+.+.|++|||||.++-
T Consensus 13 ~iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347789999999998643
No 468
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=56.09 E-value=5.3 Score=34.37 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.|.-+.+.||+|+|||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578889999999999974
No 469
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=56.08 E-value=5.8 Score=32.57 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=14.7
Q ss_pred CCEEEECCCCchhHHHhH
Q 012434 70 RDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~ 87 (464)
..+.+.+++|||||.++-
T Consensus 9 ~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998543
No 470
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=56.02 E-value=9 Score=38.47 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=37.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCC--cc--chhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 012434 27 CPLDHLPCLDPRLKVALQNMGIS--SL--FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 27 ~~~~~~~~l~~~i~~~~~~~~~~--~l--~~~Q~~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
.|+..+|--.++..+..+..... .| +..=..|+..+.. -..++.+++.|.+|+|||.+.-. +++.+.
T Consensus 49 NPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~-~~~nQsIiisGESGAGKTe~tK~-i~~yla 119 (697)
T 1lkx_A 49 NPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQ-SQENQCVIISGESGAGKTEASKK-IMQFLT 119 (697)
T ss_dssp CCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHH-HCCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred cCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHh-cCCCcEEEecCCCCCCchhhHHH-HHHHHH
Confidence 35555543456666655432221 22 2333455555542 22457899999999999988554 444444
No 471
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=55.97 E-value=5.2 Score=35.10 Aligned_cols=19 Identities=21% Similarity=0.079 Sum_probs=16.1
Q ss_pred CCCCCEEEECCCCchhHHH
Q 012434 67 LFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~ 85 (464)
..|.-+.+.||+|+|||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577789999999999974
No 472
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=55.96 E-value=4.9 Score=34.82 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=16.6
Q ss_pred CCCCCCEEEECCCCchhHHH
Q 012434 66 GLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~ 85 (464)
+..|.-+.+.||.|+|||..
T Consensus 38 i~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCcEEEEECCCCCCHHHH
Confidence 34577889999999999973
No 473
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=55.92 E-value=6.2 Score=34.40 Aligned_cols=20 Identities=30% Similarity=0.224 Sum_probs=16.8
Q ss_pred CCCCCCEEEECCCCchhHHH
Q 012434 66 GLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~ 85 (464)
+..|.-+.+.||+|+|||..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44578889999999999974
No 474
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=55.92 E-value=6.1 Score=33.03 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=50.3
Q ss_pred CCeEEEEecChhhHHHHHHHHhhcCcc-----ceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc-----cccc-cCC
Q 012434 332 EEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMD 400 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~-----~~~~-Gid 400 (464)
+.++||.+++++.+..+++.+++.... +..+..++|+.+..+.. +.+ .+..+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999999888887765321 36777788887543221 111 23578999995 2222 355
Q ss_pred CCCCCeEEEecC
Q 012434 401 VEGVNNVVNYDK 412 (464)
Q Consensus 401 ip~~~~vi~~~~ 412 (464)
+..++.+|+...
T Consensus 148 ~~~~~~lViDEa 159 (219)
T 1q0u_A 148 VHTAHILVVDEA 159 (219)
T ss_dssp GGGCCEEEECSH
T ss_pred cCcceEEEEcCc
Confidence 667777776543
No 475
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=55.78 E-value=5 Score=35.13 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=16.6
Q ss_pred CCCCCCEEEECCCCchhHHH
Q 012434 66 GLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~ 85 (464)
+..|.-+.+.||.|+|||..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34578889999999999973
No 476
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=55.75 E-value=5 Score=34.95 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=16.7
Q ss_pred CCCCCCEEEECCCCchhHHH
Q 012434 66 GLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~ 85 (464)
+..|.-+.+.||.|+|||..
T Consensus 47 i~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHH
Confidence 44577889999999999973
No 477
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=55.68 E-value=5.4 Score=33.83 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.|.-+.+.||.|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578889999999999973
No 478
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=55.52 E-value=5.9 Score=40.82 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=16.6
Q ss_pred CCCCCEEEECCCCchhHHHh
Q 012434 67 LFERDLCINSPTGSGKTLSY 86 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~~ 86 (464)
..+..+++.||+|+|||..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 34678999999999999753
No 479
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=55.43 E-value=6.7 Score=36.05 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.6
Q ss_pred CEEEECCCCchhHHHh
Q 012434 71 DLCINSPTGSGKTLSY 86 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~ 86 (464)
-.++.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5779999999999754
No 480
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=55.32 E-value=7.8 Score=37.66 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=27.1
Q ss_pred HhHHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHh
Q 012434 57 AVWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (464)
Q Consensus 57 ~~~~~i~~-~~~~~~~~li~~~tG~GKT~~~~~~~l~~~~~ 96 (464)
.+++.+.- .+..|..+++.+|+|+|||......++.-+..
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 34555544 55568889999999999998655433444443
No 481
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=55.06 E-value=5.2 Score=34.89 Aligned_cols=31 Identities=16% Similarity=0.033 Sum_probs=21.4
Q ss_pred CCCccEEEEehhhHhhhHhhhhhHHHHHHhc
Q 012434 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (464)
Q Consensus 195 ~~~~~~iIvDE~H~~~~~~~~~~~~~~~~~~ 225 (464)
+.+.+++++||--.-++......+..++..+
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 4556788888888777776666666655544
No 482
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=54.96 E-value=10 Score=34.48 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.4
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
++++.|++|+|||..+-
T Consensus 26 ~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAE 42 (359)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 48999999999998643
No 483
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=54.72 E-value=13 Score=26.75 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=29.7
Q ss_pred CCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCccc
Q 012434 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (464)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 370 (464)
..+++++|.+-..+...+..|++.| +.+..+.||+.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G---~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANG---IDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcC---CCEEEecChHH
Confidence 5689999999888889999999877 77777888864
No 484
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=54.38 E-value=37 Score=32.05 Aligned_cols=36 Identities=8% Similarity=0.046 Sum_probs=29.2
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCc
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 140 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~ 140 (464)
..++||.+|++.-++++++.++.. ++++..+++...
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~ 223 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF 223 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH
Confidence 347999999999999888888765 678888888654
No 485
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=54.35 E-value=5.9 Score=33.89 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.|.-+.+.||.|+|||..
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999973
No 486
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=54.24 E-value=35 Score=35.98 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=56.7
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchhHHHHHhhccccccccccCCchhHHHhhhcC---CcEE
Q 012434 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA---VDIL 176 (464)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Ii 176 (464)
.+.++||.|+++.-+..+.+.+... .|+++..++|+.+...+. .+.+.+..+ .+|+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~------------------~~l~~F~~g~~~~~vL 560 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERD------------------RAAAWFAEEDTGAQVL 560 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHH------------------HHHHHHHSTTSSCEEE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHH------------------HHHHHHhCCCCcccEE
Confidence 4558999999999888877777742 278999999997765542 222333333 7899
Q ss_pred EeCchHHHHhhhcCCCcCCCCccEEEEehhh
Q 012434 177 VATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (464)
Q Consensus 177 I~T~~~l~~~l~~~~~~~~~~~~~iIvDE~H 207 (464)
|+| ..+ ..++++...++||+-+..
T Consensus 561 vaT-~v~------~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 561 LCS-EIG------SEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp ECS-CCT------TCSSCCTTCCEEECSSCC
T ss_pred Eec-chh------hcCCCcccCcEEEEecCC
Confidence 999 221 345778888899887766
No 487
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=54.21 E-value=5.3 Score=33.77 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCchhHHH
Q 012434 68 FERDLCINSPTGSGKTLS 85 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~ 85 (464)
.|.-+.+.||.|+|||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477788999999999973
No 488
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=54.17 E-value=6.5 Score=32.41 Aligned_cols=19 Identities=32% Similarity=0.190 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 012434 69 ERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 69 ~~~~li~~~tG~GKT~~~~ 87 (464)
+.-+.+.|++|+|||..+-
T Consensus 22 ~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SEEEEEEECTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4558889999999998543
No 489
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=54.06 E-value=6.1 Score=36.41 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.8
Q ss_pred CCEEEECCCCchhHHH
Q 012434 70 RDLCINSPTGSGKTLS 85 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~ 85 (464)
.-.++.|+||+|||..
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4578999999999985
No 490
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=53.95 E-value=11 Score=38.49 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=20.3
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHH
Q 012434 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~~~~l~~~~ 95 (464)
.++.+++.|.+|+|||.+.-. +++++.
T Consensus 155 ~nQsIiisGESGAGKTe~tK~-i~~yla 181 (795)
T 1w7j_A 155 RNQSIIVSGESGAGKTVSAKY-AMRYFA 181 (795)
T ss_dssp CCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CCeEEEEeCCCCCCcchHHHH-HHHHHH
Confidence 457899999999999988655 444443
No 491
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=53.83 E-value=6 Score=34.25 Aligned_cols=20 Identities=30% Similarity=0.169 Sum_probs=16.5
Q ss_pred CCCCCCEEEECCCCchhHHH
Q 012434 66 GLFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 66 ~~~~~~~li~~~tG~GKT~~ 85 (464)
+..|.-+.+.||.|+|||..
T Consensus 30 i~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EeCCCEEEEECCCCCCHHHH
Confidence 33577889999999999973
No 492
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=53.82 E-value=11 Score=38.69 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 012434 68 FERDLCINSPTGSGKTLSYA 87 (464)
Q Consensus 68 ~~~~~li~~~tG~GKT~~~~ 87 (464)
.+.++++.||+|+|||..+-
T Consensus 206 ~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHH
Confidence 45789999999999998644
No 493
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=53.68 E-value=7.8 Score=37.27 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.6
Q ss_pred CCEEEECCCCchhHHHh
Q 012434 70 RDLCINSPTGSGKTLSY 86 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~ 86 (464)
+.+++.||+|+|||..+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999853
No 494
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=53.65 E-value=36 Score=34.11 Aligned_cols=34 Identities=6% Similarity=0.062 Sum_probs=28.8
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecC
Q 012434 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (464)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~ 138 (464)
+.++||.+|++.-++.+++.++.. ++++..++|.
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~ 443 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK 443 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH
Confidence 457999999999999888888765 7889999994
No 495
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=53.63 E-value=14 Score=37.38 Aligned_cols=76 Identities=9% Similarity=0.131 Sum_probs=54.7
Q ss_pred CCCeEEEEecChhhHHHHHHHHhhcCccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc-----cccccCC-CCCC
Q 012434 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRGMD-VEGV 404 (464)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~-----~~~~Gid-ip~~ 404 (464)
.++++++.+|++.-+...++.++.....+..+..++|+....++ ..++.+|+|+|+ .+..+.. +..+
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 46799999999999999999986655556888889998765432 124679999995 2333333 5567
Q ss_pred CeEEEecCC
Q 012434 405 NNVVNYDKP 413 (464)
Q Consensus 405 ~~vi~~~~~ 413 (464)
++||+-...
T Consensus 140 ~~vIiDE~H 148 (702)
T 2p6r_A 140 SCLVVDEIH 148 (702)
T ss_dssp CEEEETTGG
T ss_pred CEEEEeeee
Confidence 888876543
No 496
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=53.62 E-value=6 Score=34.49 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.2
Q ss_pred CCCCCEEEECCCCchhHHH
Q 012434 67 LFERDLCINSPTGSGKTLS 85 (464)
Q Consensus 67 ~~~~~~li~~~tG~GKT~~ 85 (464)
..|.-+.+.||+|+|||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3578889999999999973
No 497
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=53.51 E-value=27 Score=35.78 Aligned_cols=59 Identities=8% Similarity=-0.047 Sum_probs=43.9
Q ss_pred hhCCCeEEEEecChhhHHHHHHHHhhcC-ccceeEeeccCcccHHHHHHHHHHHhcCCeeEEEEcc
Q 012434 329 SLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (464)
Q Consensus 329 ~~~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~iLi~t~ 393 (464)
...+..++|.+++.+.|...++.+.... ..++.+..+.|+++...|.... .++|+++|+
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 3456789999999999988877776542 2358899999999876544322 379999996
No 498
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=53.34 E-value=12 Score=38.07 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=22.1
Q ss_pred HhHHhhhCCCCCCCCEEEECCCCchhHHHhHHH
Q 012434 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89 (464)
Q Consensus 57 ~~~~~i~~~~~~~~~~li~~~tG~GKT~~~~~~ 89 (464)
.|+..+.. -..++.+++.|.+|+|||.+.-..
T Consensus 161 ~Ay~~m~~-~~~nQsIiisGESGAGKTe~tK~i 192 (770)
T 1w9i_A 161 VAYRSMLD-DRQNQSLLITGESGAGKTENTKKV 192 (770)
T ss_dssp HHHHHHHH-HCCCEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHh-hcCCcEEEEecCCCCcchHHHHHH
Confidence 44544432 124578999999999999885543
No 499
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=53.22 E-value=14 Score=36.54 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=24.7
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHhhccCCccEEEEc
Q 012434 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (464)
Q Consensus 70 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~~~~~~lil~ 108 (464)
+-+++.+..|+|||.++...+...... +.++|++.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~----G~rVLlvd 43 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQ----GKRVLLVS 43 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHC----CCcEEEEE
Confidence 557778999999999877555544443 44788874
No 500
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=52.96 E-value=6 Score=34.05 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.2
Q ss_pred CEEEECCCCchhHHHhH
Q 012434 71 DLCINSPTGSGKTLSYA 87 (464)
Q Consensus 71 ~~li~~~tG~GKT~~~~ 87 (464)
.+.+.|++|||||.++-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998643
Done!