BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012436
         (464 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi
 pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi
 pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi Produced By Soaking In Trehalose
 pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi Produced By Soaking In Trehalose
          Length = 416

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 12/164 (7%)

Query: 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKD 327
           E P I  V++F P K     +E +    RK+   +P  +L  VG   +  D E     + 
Sbjct: 230 EKPIITQVSRFDPWKGIFDVIEIY----RKVKEKIPGVQLLLVGVMAH-DDPEGWIYFEK 284

Query: 328 KSIELKVDGNVEFYKNLL---YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIA 384
              ++  D +V+   NL+    R++      + V +   I E FG++V E M  G   I 
Sbjct: 285 TLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIG 344

Query: 385 HNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETER 428
               G K  IV   DG+ TGFL ++A E  + ++ ++  PE  +
Sbjct: 345 RAVGGIKFQIV---DGE-TGFLVRDANEAVEVVLYLLKHPEVSK 384


>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
           (Wbaz-1)from Archaeoglobus Fulgidus, Northeast
           Structural Genomics Target Gr29a
          Length = 177

 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 17/154 (11%)

Query: 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL 332
           +SV +  PEK   LQLE F          L   +L  VG        ER      + I  
Sbjct: 27  LSVNRIYPEKRIELQLEVFK--------KLQDEKLYIVGWFSKGDHAERYA----RKIXK 74

Query: 333 KVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKM 392
               NV+F  ++   +L+ L       + +  DE FG++ +E  A+G   IA N  G K 
Sbjct: 75  IAPDNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAXASGKPVIAVNEGGFKE 134

Query: 393 DIVLEEDGQQTGFLAQ-NAEEYADAIVKIISMPE 425
            ++     ++TG+L   +  E  DA  K+   P+
Sbjct: 135 TVI----NEKTGYLVNADVNEIIDAXKKVSKNPD 164


>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horishiki In Complex With Udp
 pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horishiki In Complex With Udp
 pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
 pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
 pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
 pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
          Length = 416

 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 12/164 (7%)

Query: 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKD 327
           E P I  V++F P K     +E +    RK+   +P  +L  VG   +  D E     + 
Sbjct: 230 EKPIITQVSRFDPWKGIFDVIEIY----RKVKEKIPGVQLLLVGVMAH-DDPEGWIYFEK 284

Query: 328 KSIELKVDGNVEFYKNLL---YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIA 384
              ++  D +V+   NL+    R++      + V +   I   FG++V E M  G   I 
Sbjct: 285 TLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIRAGFGLTVTEAMWKGKPVIG 344

Query: 385 HNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETER 428
               G K  IV   DG+ TGFL ++A E  + ++ ++  PE  +
Sbjct: 345 RAVGGIKFQIV---DGE-TGFLVRDANEAVEVVLYLLKHPEVSK 384


>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 200

 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 11/104 (10%)

Query: 328 KSIELKVDGNVEFYKNLLYRDLVKLLGGAV--VGIHSMIDEHFGISVVEYMAAGAIPIAH 385
           +S+E K  GNV+    +L R+ V+ L G+V  V I S   E FG+  +E M  GAIPIA 
Sbjct: 88  RSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYF-EPFGLVALEAMCLGAIPIAS 145

Query: 386 NSAGPKMDIVLEEDGQQTGFLAQNAE--EYADAIVKIISMPETE 427
              G + DI+  E    TG L +  +  E A+AI+K + +  ++
Sbjct: 146 AVGGLR-DIITNE----TGILVKAGDPGELANAILKALELSRSD 184


>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshii (Seleno Derivative)
 pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshii (Seleno Derivative)
          Length = 416

 Score = 41.6 bits (96), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 12/164 (7%)

Query: 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKD 327
           E P I  V++F P K     +E +    RK+   +P  +L  VG      D E     + 
Sbjct: 230 EKPIITQVSRFDPWKGIFDVIEIY----RKVKEKIPGVQLLLVG-VXAHDDPEGWIYFEK 284

Query: 328 KSIELKVDGNVEFYKNLL---YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIA 384
              ++  D +V+   NL+    R++      + V +   I E FG++V E    G   I 
Sbjct: 285 TLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQXSIREGFGLTVTEAXWKGKPVIG 344

Query: 385 HNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETER 428
               G K  IV   DG+ TGFL ++A E  + ++ ++  PE  +
Sbjct: 345 RAVGGIKFQIV---DGE-TGFLVRDANEAVEVVLYLLKHPEVSK 384


>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
          Length = 439

 Score = 41.6 bits (96), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 11/104 (10%)

Query: 328 KSIELKVDGNVEFYKNLLYRDLVKLLGGAV--VGIHSMIDEHFGISVVEYMAAGAIPIAH 385
           +S+E K  GNV+    +L R+ V+ L G+V  V I S   E FG+  +E M  GAIPIA 
Sbjct: 303 RSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYF-EPFGLVALEAMCLGAIPIA- 359

Query: 386 NSAGPKMDIVLEEDGQQTGFLAQNAE--EYADAIVKIISMPETE 427
           ++ G   DI+  E    TG L +  +  E A+AI+K + +  ++
Sbjct: 360 SAVGGLRDIITNE----TGILVKAGDPGELANAILKALELSRSD 399


>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
 pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 428

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 11/104 (10%)

Query: 328 KSIELKVDGNVEFYKNLLYRDLVKLLGGAV--VGIHSMIDEHFGISVVEYMAAGAIPIAH 385
           +S+E K  GNV+    +L R+ V+ L G+V  V I S   E FG+  +E M  GAIPIA 
Sbjct: 303 RSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYF-EPFGLVALEAMCLGAIPIA- 359

Query: 386 NSAGPKMDIVLEEDGQQTGFLAQNAE--EYADAIVKIISMPETE 427
           ++ G   DI+  E    TG L +  +  E A+AI+K + +  ++
Sbjct: 360 SAVGGLRDIITNE----TGILVKAGDPGELANAILKALELSRSD 399


>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
          Length = 440

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 11/104 (10%)

Query: 328 KSIELKVDGNVEFYKNLLYRDLVKLLGGAV--VGIHSMIDEHFGISVVEYMAAGAIPIAH 385
           +S+E K  GNV+    +L R+ V+ L G+V  V I S   E FG+  +E M  GAIPIA 
Sbjct: 304 RSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYF-EPFGLVALEAMCLGAIPIA- 360

Query: 386 NSAGPKMDIVLEEDGQQTGFLAQNAE--EYADAIVKIISMPETE 427
           ++ G   DI+  E    TG L +  +  E A+AI+K + +  ++
Sbjct: 361 SAVGGLRDIITNE----TGILVKAGDPGELANAILKALELSRSD 400


>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
 pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
          Length = 381

 Score = 33.1 bits (74), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 26/155 (16%)

Query: 246 IKRVYP--PCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLP 303
           +KR  P  P D S  +   L  +   P I   ++  P K      ++   A+ ++ A  P
Sbjct: 174 VKRFTPATPEDKSATRK-KLGFTDTTPVIACNSRLVPRKGQ----DSLIKAMPQVIAARP 228

Query: 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM 363
             +L  VGS R +S   RL +         V  NV+F   L Y+D++  L  A   I +M
Sbjct: 229 DAQLLIVGSGRYESTLRRLAT--------DVSQNVKFLGRLEYQDMINTLAAA--DIFAM 278

Query: 364 --------ID-EHFGISVVEYMAAGAIPIAHNSAG 389
                   +D E  GI  +E  A G   IA  S G
Sbjct: 279 PARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGG 313


>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp (Orthorhombic Crystal Form)
 pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp-Man (Orthorhombic Crystal Form)
          Length = 394

 Score = 33.1 bits (74), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 26/155 (16%)

Query: 246 IKRVYP--PCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLP 303
           +KR  P  P D S  +   L  +   P I   ++  P K      ++   A+ ++ A  P
Sbjct: 174 VKRFTPATPEDKSATRK-KLGFTDTTPVIACNSRLVPRKGQ----DSLIKAMPQVIAARP 228

Query: 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM 363
             +L  VGS R +S   RL +         V  NV+F   L Y+D++  L  A   I +M
Sbjct: 229 DAQLLIVGSGRYESTLRRLAT--------DVSQNVKFLGRLEYQDMINTLAAA--DIFAM 278

Query: 364 --------ID-EHFGISVVEYMAAGAIPIAHNSAG 389
                   +D E  GI  +E  A G   IA  S G
Sbjct: 279 PARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGG 313


>pdb|1RYY|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|E Chain E, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|F Chain F, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|G Chain G, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|H Chain H, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
          Length = 652

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)

Query: 130 YLSWEALCK------FTPLYYFDTSGYAFTYPLA 157
           Y SW ++C+       TPLY  D  G +FT+P A
Sbjct: 391 YRSWPSVCESNCTGGLTPLYLADGHGLSFTHPAA 424


>pdb|1NX9|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           S205a Mutant Complexed With Ampicillin
 pdb|1NX9|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           S205a Mutant Complexed With Ampicillin
 pdb|1NX9|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           S205a Mutant Complexed With Ampicillin
 pdb|1NX9|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           S205a Mutant Complexed With Ampicillin
          Length = 652

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)

Query: 130 YLSWEALCK------FTPLYYFDTSGYAFTYPLA 157
           Y SW ++C+       TPLY  D  G +FT+P A
Sbjct: 391 YRSWPSVCESNCTGGLTPLYLADGHGLSFTHPAA 424


>pdb|2B4K|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Complexed With Phenylglycine
 pdb|2B4K|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Complexed With Phenylglycine
 pdb|2B4K|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Complexed With Phenylglycine
 pdb|2B4K|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Complexed With Phenylglycine
 pdb|2B9V|A Chain A, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|B Chain B, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|C Chain C, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|D Chain D, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|E Chain E, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|F Chain F, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|G Chain G, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|H Chain H, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|I Chain I, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|J Chain J, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|K Chain K, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|L Chain L, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|M Chain M, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|N Chain N, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|O Chain O, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|P Chain P, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
          Length = 652

 Score = 30.0 bits (66), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)

Query: 130 YLSWEALCK------FTPLYYFDTSGYAFTYPLA 157
           Y SW ++C+       TPLY  D  G +FT+P A
Sbjct: 391 YRSWPSVCESNCTGGLTPLYLADGHGLSFTHPAA 424


>pdb|3CGM|A Chain A, Crystal Structure Of Thermophilic Slyd
 pdb|3CGN|A Chain A, Crystal Structure Of Thermophilic Slyd
 pdb|3LUO|A Chain A, Crystal Structure And Functional Characterization Of The
           The Prolyl Isomerase And Chaperone Slyd
          Length = 158

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 247 KRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPE--KAHPLQLEAFSVALRKLDADLPR 304
           ++ Y P D  G+QV+PL    E   ++  AQF  +  + +P+ L   +V   ++  D   
Sbjct: 60  EKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNH 119

Query: 305 P 305
           P
Sbjct: 120 P 120


>pdb|4G59|C Chain C, Crystal Structure Of The Murine Cytomegalovirus Mhc-I
           Homolog M152 With Ligand Rae-1 Gamma
 pdb|4G59|D Chain D, Crystal Structure Of The Murine Cytomegalovirus Mhc-I
           Homolog M152 With Ligand Rae-1 Gamma
          Length = 321

 Score = 28.9 bits (63), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 171 PTISLDMISRVREGS--SMYNNNASIAQSNWLSQCKIV 206
           P +S D I+R  +GS  S+  +NA++ Q  W S C+ +
Sbjct: 138 PDVSEDDIARYGQGSGISILRDNAALLQKRWTSFCRKI 175


>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
           Time- Resolved Electron Cryo-Microscopy (Closed Class)
 pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
           Time-Resolved Electron Cryo-Microscopy (Open Class)
          Length = 488

 Score = 28.1 bits (61), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE 339
           PEK  P +  +F + ++  +  L +PR + +     + D   L+ +   + ++ +   V+
Sbjct: 343 PEKPQPRRRSSFGIMIKAEEYILKKPRSELM--FEEQKDRHGLKRVNKMTSDIDIGTTVD 400

Query: 340 FYKNL 344
            YK+L
Sbjct: 401 LYKDL 405


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,064,268
Number of Sequences: 62578
Number of extensions: 583495
Number of successful extensions: 1252
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1247
Number of HSP's gapped (non-prelim): 21
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)