Query 012436
Match_columns 464
No_of_seqs 320 out of 2546
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:37:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02949 transferase, transfer 100.0 1.9E-63 4.2E-68 482.6 48.1 455 9-463 4-462 (463)
2 cd03806 GT1_ALG11_like This fa 100.0 1.8E-55 3.8E-60 427.1 42.2 410 36-449 2-418 (419)
3 KOG1387 Glycosyltransferase [C 100.0 9.5E-54 2.1E-58 371.6 39.9 421 31-463 40-464 (465)
4 cd03796 GT1_PIG-A_like This fa 100.0 2E-43 4.2E-48 343.1 36.2 365 36-462 1-372 (398)
5 cd03805 GT1_ALG2_like This fam 100.0 2.7E-42 5.9E-47 335.6 34.7 375 35-451 1-392 (392)
6 PRK15427 colanic acid biosynth 100.0 3.6E-42 7.8E-47 332.6 33.9 370 35-457 1-405 (406)
7 TIGR03088 stp2 sugar transfera 100.0 4E-41 8.7E-46 325.1 36.4 358 35-459 2-374 (374)
8 PRK10307 putative glycosyl tra 100.0 1.4E-41 3.1E-46 331.9 33.5 386 35-461 1-411 (412)
9 PLN02871 UDP-sulfoquinovose:DA 100.0 9.3E-41 2E-45 329.9 37.8 367 30-461 54-438 (465)
10 TIGR03449 mycothiol_MshA UDP-N 100.0 1.1E-40 2.4E-45 325.4 36.9 371 47-460 19-404 (405)
11 TIGR02472 sucr_P_syn_N sucrose 100.0 5.5E-40 1.2E-44 321.8 35.1 377 48-456 26-439 (439)
12 cd04962 GT1_like_5 This family 100.0 2.9E-40 6.3E-45 319.0 32.3 355 35-458 1-371 (371)
13 TIGR02468 sucrsPsyn_pln sucros 100.0 1E-39 2.2E-44 332.3 37.3 413 27-461 162-674 (1050)
14 PLN02939 transferase, transfer 100.0 6.3E-39 1.4E-43 321.5 38.3 420 19-461 466-970 (977)
15 PRK15179 Vi polysaccharide bio 100.0 1E-38 2.3E-43 319.8 38.2 374 32-456 278-692 (694)
16 cd03818 GT1_ExpC_like This fam 100.0 1.9E-38 4E-43 308.2 37.2 369 36-452 1-395 (396)
17 TIGR02149 glgA_Coryne glycogen 100.0 1.4E-38 3.1E-43 309.0 34.2 363 35-459 1-388 (388)
18 PLN02316 synthase/transferase 100.0 3.4E-38 7.4E-43 322.1 37.4 380 30-459 583-1035(1036)
19 TIGR02470 sucr_synth sucrose s 100.0 3.5E-38 7.7E-43 315.1 36.5 391 35-455 256-745 (784)
20 cd05844 GT1_like_7 Glycosyltra 100.0 2.5E-38 5.4E-43 305.0 33.2 283 131-453 73-366 (367)
21 cd03800 GT1_Sucrose_synthase T 100.0 3.8E-38 8.2E-43 307.2 34.7 362 47-452 20-397 (398)
22 PRK14099 glycogen synthase; Pr 100.0 1.4E-37 3.1E-42 305.2 36.7 401 33-463 2-484 (485)
23 PRK00654 glgA glycogen synthas 100.0 7.2E-38 1.6E-42 308.7 33.2 395 35-460 1-465 (466)
24 PRK15484 lipopolysaccharide 1, 100.0 1.6E-37 3.4E-42 298.6 33.0 267 138-459 97-379 (380)
25 PRK09922 UDP-D-galactose:(gluc 100.0 4.5E-38 9.7E-43 301.2 28.3 347 35-460 1-358 (359)
26 PRK15490 Vi polysaccharide bio 100.0 4.2E-37 9.2E-42 294.0 33.7 285 127-457 267-575 (578)
27 PRK10125 putative glycosyl tra 100.0 5.7E-37 1.2E-41 295.1 33.8 373 35-458 1-405 (405)
28 PRK14098 glycogen synthase; Pr 100.0 4.9E-37 1.1E-41 301.8 33.6 394 32-460 3-488 (489)
29 TIGR02095 glgA glycogen/starch 100.0 3.3E-37 7.1E-42 305.6 32.3 395 35-458 1-473 (473)
30 cd03799 GT1_amsK_like This is 100.0 8.1E-37 1.8E-41 293.1 32.7 341 36-450 1-354 (355)
31 cd03809 GT1_mtfB_like This fam 100.0 6.6E-37 1.4E-41 294.6 31.9 353 36-452 1-364 (365)
32 cd04955 GT1_like_6 This family 100.0 1.7E-36 3.6E-41 291.9 34.3 352 36-456 1-363 (363)
33 cd03792 GT1_Trehalose_phosphor 100.0 1.4E-36 3E-41 292.8 33.6 350 36-457 1-371 (372)
34 PLN00142 sucrose synthase 100.0 4.4E-37 9.5E-42 307.2 30.7 391 35-455 280-768 (815)
35 cd03795 GT1_like_4 This family 100.0 1.4E-36 3.1E-41 291.6 32.5 343 36-448 1-357 (357)
36 cd03822 GT1_ecORF704_like This 100.0 2.4E-36 5.3E-41 290.8 34.0 348 36-456 1-366 (366)
37 cd03820 GT1_amsD_like This fam 100.0 2.7E-36 5.9E-41 287.7 33.4 344 36-452 1-347 (348)
38 cd03802 GT1_AviGT4_like This f 100.0 2.1E-36 4.6E-41 287.8 31.7 327 35-456 1-335 (335)
39 cd03819 GT1_WavL_like This fam 100.0 3.8E-36 8.2E-41 288.5 33.0 332 42-447 5-355 (355)
40 cd03821 GT1_Bme6_like This fam 100.0 6.7E-36 1.5E-40 288.1 34.7 360 36-452 1-374 (375)
41 TIGR03087 stp1 sugar transfera 100.0 1.3E-35 2.9E-40 288.1 36.8 376 37-456 1-395 (397)
42 cd03816 GT1_ALG1_like This fam 100.0 4.4E-36 9.6E-41 291.8 32.9 368 33-450 2-409 (415)
43 cd03804 GT1_wbaZ_like This fam 100.0 2.5E-36 5.3E-41 289.1 30.7 348 36-451 1-350 (351)
44 cd03801 GT1_YqgM_like This fam 100.0 4.7E-36 1E-40 288.2 32.7 361 36-456 1-374 (374)
45 cd03817 GT1_UGDG_like This fam 100.0 1.2E-35 2.6E-40 286.5 33.6 360 36-457 1-373 (374)
46 cd03814 GT1_like_2 This family 100.0 4.9E-36 1.1E-40 288.3 30.8 351 36-456 1-364 (364)
47 cd03812 GT1_CapH_like This fam 100.0 5.5E-36 1.2E-40 287.7 30.4 334 36-439 1-346 (358)
48 cd04951 GT1_WbdM_like This fam 100.0 1.7E-35 3.7E-40 284.4 33.9 343 36-456 1-359 (360)
49 cd03791 GT1_Glycogen_synthase_ 100.0 3.6E-36 7.7E-41 299.4 29.9 391 36-456 1-475 (476)
50 KOG1111 N-acetylglucosaminyltr 100.0 2.8E-37 6.1E-42 271.0 17.9 362 35-463 1-372 (426)
51 cd03813 GT1_like_3 This family 100.0 5.1E-36 1.1E-40 296.2 29.0 291 139-456 172-475 (475)
52 cd03807 GT1_WbnK_like This fam 100.0 3.4E-35 7.3E-40 282.1 33.4 349 36-456 1-365 (365)
53 cd03798 GT1_wlbH_like This fam 100.0 5.3E-35 1.1E-39 281.6 33.4 361 37-458 1-377 (377)
54 cd03823 GT1_ExpE7_like This fa 100.0 7.9E-35 1.7E-39 279.3 32.7 348 36-456 1-358 (359)
55 cd03808 GT1_cap1E_like This fa 100.0 2E-34 4.2E-39 276.1 34.7 349 36-452 1-358 (359)
56 cd03825 GT1_wcfI_like This fam 100.0 1.9E-34 4.1E-39 277.7 33.8 344 35-458 1-365 (365)
57 PLN02846 digalactosyldiacylgly 100.0 6.3E-34 1.4E-38 271.9 36.5 361 32-456 2-390 (462)
58 cd03794 GT1_wbuB_like This fam 100.0 1.1E-34 2.3E-39 281.4 31.6 371 36-451 1-393 (394)
59 cd03811 GT1_WabH_like This fam 100.0 2E-34 4.4E-39 275.1 29.4 338 36-443 1-352 (353)
60 TIGR02918 accessory Sec system 100.0 3.4E-33 7.3E-38 274.0 31.2 280 134-458 205-500 (500)
61 cd04946 GT1_AmsK_like This fam 100.0 8.6E-33 1.9E-37 268.1 32.0 222 216-452 178-406 (407)
62 PLN02275 transferase, transfer 100.0 7E-32 1.5E-36 258.8 30.6 251 136-421 96-371 (371)
63 PLN02501 digalactosyldiacylgly 100.0 2.8E-30 6.1E-35 249.7 34.6 276 126-455 420-707 (794)
64 cd04949 GT1_gtfA_like This fam 100.0 2.5E-31 5.4E-36 256.6 26.4 272 138-451 97-372 (372)
65 PHA01630 putative group 1 glyc 100.0 5.7E-30 1.2E-34 239.1 27.1 217 216-457 88-330 (331)
66 PRK00726 murG undecaprenyldiph 100.0 2.9E-28 6.2E-33 233.6 25.6 338 34-456 1-356 (357)
67 PHA01633 putative glycosyl tra 100.0 3.2E-27 7E-32 217.5 29.8 214 220-452 91-334 (335)
68 PRK05749 3-deoxy-D-manno-octul 100.0 6.6E-26 1.4E-30 222.1 35.1 335 49-460 61-422 (425)
69 PRK13609 diacylglycerol glucos 100.0 6.5E-27 1.4E-31 226.0 24.1 357 32-458 2-372 (380)
70 cd03785 GT1_MurG MurG is an N- 100.0 1.1E-26 2.5E-31 222.2 25.4 330 36-449 1-349 (350)
71 KOG0853 Glycosyltransferase [C 100.0 4.8E-26 1E-30 214.0 27.2 394 28-459 28-469 (495)
72 TIGR01133 murG undecaprenyldip 99.9 2.5E-26 5.4E-31 219.7 23.6 329 35-449 1-346 (348)
73 TIGR02400 trehalose_OtsA alpha 99.9 1.1E-25 2.5E-30 218.2 28.3 284 137-456 123-455 (456)
74 cd03788 GT1_TPS Trehalose-6-Ph 99.9 2.9E-26 6.2E-31 224.5 22.1 281 140-455 131-459 (460)
75 cd03793 GT1_Glycogen_synthase_ 99.9 1.6E-24 3.6E-29 207.9 30.0 310 139-460 147-589 (590)
76 COG0297 GlgA Glycogen synthase 99.9 2E-24 4.3E-29 206.8 29.8 397 35-462 1-482 (487)
77 PRK13608 diacylglycerol glucos 99.9 2.3E-25 5E-30 214.9 23.2 356 33-460 4-374 (391)
78 PLN02605 monogalactosyldiacylg 99.9 5.5E-25 1.2E-29 212.0 25.3 267 130-455 90-379 (382)
79 cd04950 GT1_like_1 Glycosyltra 99.9 3.6E-24 7.8E-29 205.8 26.6 213 213-457 145-371 (373)
80 PLN03063 alpha,alpha-trehalose 99.9 2.4E-23 5.3E-28 214.1 26.9 290 136-460 142-480 (797)
81 PF00534 Glycos_transf_1: Glyc 99.9 4.4E-24 9.4E-29 182.5 15.3 158 266-438 12-172 (172)
82 cd01635 Glycosyltransferase_GT 99.9 2.9E-22 6.2E-27 179.4 21.9 120 274-407 109-229 (229)
83 PRK09814 beta-1,6-galactofuran 99.9 2.5E-21 5.3E-26 182.8 28.4 249 134-450 57-324 (333)
84 PRK14501 putative bifunctional 99.9 2.3E-22 5E-27 207.7 23.3 289 137-461 129-466 (726)
85 TIGR02398 gluc_glyc_Psyn gluco 99.9 3.9E-20 8.4E-25 178.3 28.2 287 136-457 127-482 (487)
86 TIGR00236 wecB UDP-N-acetylglu 99.9 2.4E-20 5.2E-25 179.1 24.6 329 35-435 1-345 (365)
87 KOG2941 Beta-1,4-mannosyltrans 99.9 1.8E-18 3.8E-23 152.2 27.8 369 33-450 11-434 (444)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 1E-19 2.3E-24 175.0 22.3 253 127-432 75-345 (363)
89 PRK00025 lpxB lipid-A-disaccha 99.8 1.8E-19 3.8E-24 174.4 23.3 342 34-461 1-377 (380)
90 COG0438 RfaG Glycosyltransfera 99.8 2.5E-18 5.3E-23 164.2 28.4 225 221-460 150-379 (381)
91 TIGR03713 acc_sec_asp1 accesso 99.8 1.2E-18 2.7E-23 171.1 22.2 216 219-455 270-519 (519)
92 PLN03064 alpha,alpha-trehalose 99.8 3.9E-17 8.5E-22 167.5 27.0 290 136-459 226-563 (934)
93 COG0707 MurG UDP-N-acetylgluco 99.8 3.6E-16 7.7E-21 146.1 24.5 326 48-453 11-353 (357)
94 COG1519 KdtA 3-deoxy-D-manno-o 99.7 4.6E-15 1E-19 136.3 28.1 356 11-439 10-401 (419)
95 TIGR00215 lpxB lipid-A-disacch 99.7 4.5E-16 9.8E-21 149.4 21.9 258 125-442 74-369 (385)
96 PF13692 Glyco_trans_1_4: Glyc 99.7 9.7E-18 2.1E-22 137.0 9.0 130 269-422 2-134 (135)
97 TIGR02094 more_P_ylases alpha- 99.7 1.2E-13 2.6E-18 137.8 27.8 237 213-455 254-598 (601)
98 PF00982 Glyco_transf_20: Glyc 99.6 1.5E-13 3.3E-18 133.3 24.7 287 136-456 136-473 (474)
99 PF05693 Glycogen_syn: Glycoge 99.6 8.5E-14 1.9E-18 133.7 22.6 247 213-461 213-585 (633)
100 PRK10117 trehalose-6-phosphate 99.6 2.3E-13 4.9E-18 130.2 24.1 289 136-459 118-455 (474)
101 TIGR03492 conserved hypothetic 99.6 4E-13 8.8E-18 129.1 24.1 357 49-452 8-393 (396)
102 PRK12446 undecaprenyldiphospho 99.6 7E-13 1.5E-17 125.6 23.2 298 48-429 12-330 (352)
103 TIGR02919 accessory Sec system 99.6 7.1E-13 1.5E-17 127.5 23.4 194 220-446 238-433 (438)
104 PF13439 Glyco_transf_4: Glyco 99.5 2.7E-14 5.8E-19 122.3 8.1 175 37-258 1-176 (177)
105 COG0380 OtsA Trehalose-6-phosp 99.5 1.7E-11 3.7E-16 116.9 27.6 287 136-457 142-479 (486)
106 PLN02205 alpha,alpha-trehalose 99.5 5.7E-12 1.2E-16 130.6 25.4 289 137-460 196-554 (854)
107 cd04299 GT1_Glycogen_Phosphory 99.5 2.3E-11 4.9E-16 123.8 28.4 238 213-455 343-687 (778)
108 PF13524 Glyco_trans_1_2: Glyc 99.5 2.7E-13 5.8E-18 102.3 9.2 91 358-453 1-92 (92)
109 COG3914 Spy Predicted O-linked 99.5 2E-10 4.3E-15 109.1 29.2 347 30-461 255-617 (620)
110 PF13579 Glyco_trans_4_4: Glyc 99.3 5.3E-12 1.2E-16 106.0 9.3 156 48-252 1-160 (160)
111 PF13844 Glyco_transf_41: Glyc 99.3 1.3E-09 2.8E-14 104.2 26.3 173 273-458 287-467 (468)
112 PF13528 Glyco_trans_1_3: Glyc 99.3 1.5E-10 3.2E-15 109.2 19.6 307 35-420 1-317 (318)
113 PF09314 DUF1972: Domain of un 99.2 6.4E-10 1.4E-14 93.1 13.9 175 35-254 2-185 (185)
114 TIGR01426 MGT glycosyltransfer 99.2 1.3E-08 2.8E-13 98.9 25.4 109 335-454 274-389 (392)
115 TIGR03568 NeuC_NnaA UDP-N-acet 99.2 2.4E-08 5.2E-13 95.3 26.3 268 127-454 80-364 (365)
116 COG0381 WecB UDP-N-acetylgluco 99.2 3.4E-08 7.4E-13 90.8 25.8 352 33-458 2-371 (383)
117 cd03784 GT1_Gtf_like This fami 99.1 4E-08 8.7E-13 95.9 26.4 88 334-433 286-380 (401)
118 TIGR03590 PseG pseudaminic aci 99.1 8.9E-09 1.9E-13 94.4 20.1 98 269-388 171-269 (279)
119 COG4641 Uncharacterized protei 99.1 3.6E-08 7.9E-13 89.8 21.8 217 221-459 138-363 (373)
120 PHA03392 egt ecdysteroid UDP-g 99.1 2.2E-08 4.7E-13 99.3 21.7 137 269-439 297-447 (507)
121 PF04007 DUF354: Protein of un 99.1 5.6E-08 1.2E-12 90.2 22.4 290 35-422 1-309 (335)
122 COG0763 LpxB Lipid A disacchar 99.1 2.6E-08 5.7E-13 91.3 19.2 325 34-438 1-358 (381)
123 PF02684 LpxB: Lipid-A-disacch 99.0 2.7E-08 5.8E-13 93.5 19.7 311 50-435 10-351 (373)
124 PRK02797 4-alpha-L-fucosyltran 99.0 3.2E-07 6.9E-12 81.9 23.4 229 207-461 84-320 (322)
125 PF02350 Epimerase_2: UDP-N-ac 99.0 1E-08 2.3E-13 96.7 13.8 272 129-456 56-346 (346)
126 TIGR00661 MJ1255 conserved hyp 99.0 1.6E-07 3.5E-12 88.4 21.6 79 335-422 228-313 (321)
127 PF07429 Glyco_transf_56: 4-al 98.9 5.8E-07 1.3E-11 81.4 22.5 222 212-458 128-356 (360)
128 COG1819 Glycosyl transferases, 98.9 1.9E-07 4.2E-12 90.0 21.0 156 268-455 237-399 (406)
129 PRK10017 colanic acid biosynth 98.9 3.2E-06 7E-11 81.7 29.0 348 35-436 1-404 (426)
130 PRK01021 lpxB lipid-A-disaccha 98.9 2.6E-07 5.7E-12 90.7 19.8 252 128-440 298-587 (608)
131 PRK14089 ipid-A-disaccharide s 98.7 1.2E-06 2.6E-11 82.1 17.0 180 139-386 75-261 (347)
132 KOG4626 O-linked N-acetylgluco 98.7 3.7E-06 8E-11 80.9 19.6 179 267-461 757-944 (966)
133 KOG3742 Glycogen synthase [Car 98.7 5.8E-07 1.3E-11 82.9 13.8 238 214-456 245-611 (692)
134 COG4671 Predicted glycosyl tra 98.5 5.6E-05 1.2E-09 68.4 22.3 333 31-422 6-364 (400)
135 PF13477 Glyco_trans_4_2: Glyc 98.5 1.6E-06 3.4E-11 70.9 10.4 135 36-229 1-139 (139)
136 PLN02448 UDP-glycosyltransfera 98.4 0.00035 7.7E-09 69.0 27.9 140 268-436 274-428 (459)
137 PF04464 Glyphos_transf: CDP-G 98.4 4.5E-05 9.8E-10 73.4 20.8 212 218-455 131-367 (369)
138 COG1817 Uncharacterized protei 98.4 0.00015 3.2E-09 64.7 21.0 293 35-425 1-315 (346)
139 PF08323 Glyco_transf_5: Starc 98.3 8.2E-06 1.8E-10 73.3 11.1 186 36-239 1-233 (245)
140 PLN03007 UDP-glucosyltransfera 98.3 0.002 4.2E-08 64.2 28.8 85 335-425 344-441 (482)
141 COG3980 spsG Spore coat polysa 98.3 3.6E-05 7.9E-10 67.4 14.2 141 270-435 160-304 (318)
142 PF12000 Glyco_trans_4_3: Gkyc 97.9 0.0002 4.3E-09 59.5 11.4 103 138-258 64-170 (171)
143 cd03789 GT1_LPS_heptosyltransf 97.9 0.0016 3.4E-08 60.1 18.4 99 271-386 124-224 (279)
144 PF04101 Glyco_tran_28_C: Glyc 97.8 1.5E-06 3.2E-11 73.4 -3.7 89 336-434 55-154 (167)
145 COG0859 RfaF ADP-heptose:LPS h 97.6 0.003 6.5E-08 59.8 16.3 268 34-386 1-277 (334)
146 TIGR02193 heptsyl_trn_I lipopo 97.6 0.031 6.8E-07 52.6 23.1 134 268-421 179-319 (319)
147 KOG1050 Trehalose-6-phosphate 97.6 0.011 2.4E-07 60.6 20.7 205 244-453 239-470 (732)
148 COG3660 Predicted nucleoside-d 97.6 0.015 3.3E-07 50.8 18.2 152 220-388 108-274 (329)
149 PLN02210 UDP-glucosyl transfer 97.6 0.094 2E-06 51.8 30.5 82 336-425 324-416 (456)
150 PRK10422 lipopolysaccharide co 97.6 0.022 4.8E-07 54.4 21.7 103 269-386 184-288 (352)
151 TIGR03609 S_layer_CsaB polysac 97.5 0.073 1.6E-06 49.5 25.8 155 213-386 119-276 (298)
152 COG2327 WcaK Polysaccharide py 97.5 0.088 1.9E-06 49.6 27.0 322 35-426 1-353 (385)
153 PRK10964 ADP-heptose:LPS hepto 97.4 0.084 1.8E-06 49.8 23.3 97 270-385 180-278 (322)
154 COG0058 GlgP Glucan phosphoryl 97.3 0.0068 1.5E-07 61.6 14.8 140 267-408 485-629 (750)
155 TIGR02201 heptsyl_trn_III lipo 97.3 0.03 6.5E-07 53.3 18.3 101 270-385 183-285 (344)
156 TIGR02195 heptsyl_trn_II lipop 97.2 0.091 2E-06 49.8 21.3 99 269-385 175-276 (334)
157 PF04413 Glycos_transf_N: 3-De 97.2 0.0033 7.1E-08 53.7 9.7 156 36-251 22-179 (186)
158 PRK10916 ADP-heptose:LPS hepto 97.1 0.058 1.2E-06 51.5 18.8 100 269-385 181-286 (348)
159 PF10933 DUF2827: Protein of u 97.1 0.094 2E-06 48.5 18.7 256 140-445 73-351 (364)
160 PF06258 Mito_fiss_Elm1: Mitoc 97.0 0.027 5.9E-07 52.3 15.0 150 220-389 96-259 (311)
161 PF00201 UDPGT: UDP-glucoronos 96.9 0.0027 5.9E-08 63.9 8.1 133 268-430 276-415 (500)
162 PLN02562 UDP-glycosyltransfera 96.9 0.039 8.5E-07 54.3 15.5 88 335-430 327-419 (448)
163 PLN02410 UDP-glucoronosyl/UDP- 96.9 0.041 9E-07 54.1 15.6 91 335-436 323-421 (451)
164 PLN02670 transferase, transfer 96.9 0.026 5.5E-07 55.7 13.8 113 337-459 340-467 (472)
165 PF12038 DUF3524: Domain of un 96.8 0.017 3.7E-07 47.1 9.9 83 133-239 52-137 (168)
166 PF01075 Glyco_transf_9: Glyco 96.8 0.02 4.3E-07 51.7 11.7 104 267-386 104-209 (247)
167 PF00343 Phosphorylase: Carboh 96.7 0.14 3E-06 52.3 18.1 197 214-414 324-602 (713)
168 PLN02764 glycosyltransferase f 96.6 0.075 1.6E-06 52.1 14.9 224 219-462 197-450 (453)
169 PLN02554 UDP-glycosyltransfera 96.6 0.04 8.6E-07 54.9 13.0 80 335-422 341-439 (481)
170 PLN03004 UDP-glycosyltransfera 96.5 0.047 1E-06 53.6 12.5 82 336-426 334-426 (451)
171 PLN02534 UDP-glycosyltransfera 96.4 1.2 2.6E-05 44.4 30.9 49 335-388 343-391 (491)
172 PLN00414 glycosyltransferase f 96.4 0.14 3E-06 50.3 15.1 152 267-438 251-417 (446)
173 PLN02167 UDP-glycosyltransfera 96.3 0.096 2.1E-06 52.1 14.2 79 336-425 340-435 (475)
174 PLN02863 UDP-glucoronosyl/UDP- 96.3 0.13 2.8E-06 51.1 14.8 77 336-422 343-432 (477)
175 PLN00164 glucosyltransferase; 96.3 0.16 3.4E-06 50.6 15.4 93 337-438 340-446 (480)
176 PLN02208 glycosyltransferase f 96.2 0.22 4.7E-06 48.9 15.6 203 218-438 190-416 (442)
177 PRK14986 glycogen phosphorylas 96.1 0.051 1.1E-06 56.2 11.0 148 267-416 541-703 (815)
178 PF04230 PS_pyruv_trans: Polys 96.1 0.62 1.4E-05 42.4 17.8 160 214-387 120-284 (286)
179 PLN02207 UDP-glycosyltransfera 96.1 0.15 3.2E-06 50.4 13.6 80 335-422 331-425 (468)
180 TIGR02093 P_ylase glycogen/sta 96.0 0.041 8.9E-07 56.7 9.6 147 267-417 525-688 (794)
181 PLN02152 indole-3-acetate beta 96.0 0.16 3.5E-06 49.9 13.5 84 335-426 326-419 (455)
182 PLN02992 coniferyl-alcohol glu 95.9 0.18 3.8E-06 50.0 13.6 81 336-425 338-428 (481)
183 PLN02173 UDP-glucosyl transfer 95.9 0.3 6.5E-06 48.0 15.1 94 335-437 316-420 (449)
184 cd04300 GT1_Glycogen_Phosphory 95.9 0.078 1.7E-06 54.9 11.2 148 267-416 528-690 (797)
185 PF08660 Alg14: Oligosaccharid 95.9 0.15 3.3E-06 42.7 11.0 111 48-166 8-126 (170)
186 PF00862 Sucrose_synth: Sucros 95.8 0.039 8.4E-07 53.2 8.1 162 47-234 295-481 (550)
187 PF11440 AGT: DNA alpha-glucos 95.8 1.3 2.8E-05 39.5 16.7 138 273-422 187-352 (355)
188 PRK14985 maltodextrin phosphor 95.7 0.11 2.5E-06 53.5 11.5 145 267-415 527-688 (798)
189 PLN02555 limonoid glucosyltran 95.7 0.43 9.4E-06 47.3 15.3 94 335-438 336-442 (480)
190 PF15024 Glyco_transf_18: Glyc 95.7 0.12 2.7E-06 50.8 11.1 152 271-457 280-455 (559)
191 COG4370 Uncharacterized protei 95.6 0.16 3.4E-06 45.7 10.5 209 220-451 177-407 (412)
192 PF08288 PIGA: PIGA (GPI ancho 95.5 0.019 4.2E-07 41.1 3.6 71 93-169 8-83 (90)
193 PF06925 MGDG_synth: Monogalac 94.8 0.16 3.4E-06 42.8 7.8 84 130-252 79-168 (169)
194 KOG0780 Signal recognition par 94.4 1.6 3.5E-05 41.0 13.7 169 271-456 156-341 (483)
195 PF05159 Capsule_synth: Capsul 93.9 0.7 1.5E-05 42.2 10.8 105 268-388 116-227 (269)
196 COG1887 TagB Putative glycosyl 93.8 5.9 0.00013 38.2 17.0 217 219-455 146-384 (388)
197 KOG1192 UDP-glucuronosyl and U 93.5 1.2 2.6E-05 44.7 12.8 91 335-433 334-431 (496)
198 PF10087 DUF2325: Uncharacteri 92.8 0.77 1.7E-05 34.4 7.6 78 307-390 2-86 (97)
199 PLN03015 UDP-glucosyl transfer 92.6 2.2 4.7E-05 42.2 12.4 77 338-422 337-425 (470)
200 PF03016 Exostosin: Exostosin 92.1 0.27 5.8E-06 45.8 5.4 68 347-417 228-299 (302)
201 PF11997 DUF3492: Domain of un 90.3 1.1 2.5E-05 40.6 7.3 88 140-242 172-265 (268)
202 KOG1021 Acetylglucosaminyltran 90.1 5.9 0.00013 39.3 12.7 93 346-442 334-430 (464)
203 PF04392 ABC_sub_bind: ABC tra 88.9 5.5 0.00012 36.9 11.0 155 218-386 56-218 (294)
204 PF12996 DUF3880: DUF based on 88.4 1.4 2.9E-05 31.6 5.1 62 217-280 14-78 (79)
205 KOG3339 Predicted glycosyltran 88.4 6.8 0.00015 32.7 9.6 59 11-74 10-73 (211)
206 COG0373 HemA Glutamyl-tRNA red 85.9 35 0.00077 33.1 17.2 137 270-438 179-318 (414)
207 PRK13398 3-deoxy-7-phosphohept 85.3 22 0.00047 32.3 12.3 106 272-387 28-142 (266)
208 TIGR00715 precor6x_red precorr 84.8 30 0.00065 31.3 19.1 84 328-421 166-255 (256)
209 PF11071 DUF2872: Protein of u 82.9 7.9 0.00017 30.2 7.0 72 348-421 65-140 (141)
210 COG1703 ArgK Putative periplas 82.4 40 0.00088 30.9 15.0 123 33-169 50-174 (323)
211 PF01113 DapB_N: Dihydrodipico 80.1 1.4 3.1E-05 34.7 2.4 44 347-390 59-102 (124)
212 TIGR03646 YtoQ_fam YtoQ family 78.7 21 0.00046 28.0 8.0 71 348-420 68-142 (144)
213 cd01967 Nitrogenase_MoFe_alpha 78.3 65 0.0014 31.4 13.9 120 280-422 134-257 (406)
214 COG2984 ABC-type uncharacteriz 77.9 59 0.0013 30.1 15.1 155 219-388 86-248 (322)
215 KOG3349 Predicted glycosyltran 77.3 9.9 0.00021 30.7 6.1 48 337-388 62-109 (170)
216 PF03033 Glyco_transf_28: Glyc 75.6 2.3 5E-05 34.1 2.4 26 48-75 9-34 (139)
217 COG2984 ABC-type uncharacteriz 75.5 26 0.00055 32.4 9.1 89 32-169 28-117 (322)
218 TIGR01361 DAHP_synth_Bsub phos 75.5 63 0.0014 29.3 12.7 104 274-387 28-140 (260)
219 COG5017 Uncharacterized conser 74.9 41 0.00089 26.8 9.5 55 338-396 48-102 (161)
220 PF00389 2-Hacid_dh: D-isomer 74.7 40 0.00088 26.7 9.7 93 337-437 20-117 (133)
221 COG3613 Nucleoside 2-deoxyribo 73.3 15 0.00033 30.4 6.5 85 304-388 4-107 (172)
222 smart00672 CAP10 Putative lipo 73.3 42 0.00091 30.3 10.1 87 368-458 157-249 (256)
223 cd03146 GAT1_Peptidase_E Type 73.1 42 0.00092 29.3 9.9 97 283-388 16-123 (212)
224 cd07944 DRE_TIM_HOA_like 4-hyd 72.8 75 0.0016 28.9 15.3 125 280-422 104-240 (266)
225 PF00185 OTCace: Aspartate/orn 72.7 21 0.00047 29.4 7.5 80 269-365 2-83 (158)
226 PF10093 DUF2331: Uncharacteri 72.3 23 0.00051 33.7 8.4 97 270-388 185-291 (374)
227 COG1692 Calcineurin-like phosp 70.7 40 0.00086 29.9 8.7 86 271-363 2-89 (266)
228 cd01971 Nitrogenase_VnfN_like 69.4 1.2E+02 0.0026 29.8 15.2 103 280-386 131-238 (427)
229 PRK00207 sulfur transfer compl 69.0 7.3 0.00016 30.9 3.8 40 35-74 1-41 (128)
230 PRK00994 F420-dependent methyl 67.3 46 0.001 29.2 8.3 90 35-172 3-98 (277)
231 TIGR02069 cyanophycinase cyano 66.9 76 0.0016 28.6 10.3 108 275-389 4-126 (250)
232 PRK13932 stationary phase surv 66.6 56 0.0012 29.5 9.2 40 32-78 3-42 (257)
233 PF01975 SurE: Survival protei 66.6 50 0.0011 28.4 8.7 38 35-78 1-38 (196)
234 PLN02342 ornithine carbamoyltr 66.1 43 0.00093 31.8 8.8 53 13-77 176-228 (348)
235 PF00852 Glyco_transf_10: Glyc 66.0 41 0.00088 32.1 8.9 79 347-431 219-305 (349)
236 PF05686 Glyco_transf_90: Glyc 64.9 26 0.00056 34.0 7.4 86 369-458 227-318 (395)
237 PRK05395 3-dehydroquinate dehy 64.6 55 0.0012 26.4 7.8 97 320-422 30-141 (146)
238 PRK07200 aspartate/ornithine c 61.3 46 0.001 32.2 8.2 63 13-77 166-228 (395)
239 COG0439 AccC Biotin carboxylas 61.2 86 0.0019 30.9 10.1 116 279-422 58-186 (449)
240 cd03174 DRE_TIM_metallolyase D 61.1 1.3E+02 0.0027 27.2 11.3 120 283-420 113-245 (265)
241 cd07940 DRE_TIM_IPMS 2-isoprop 61.1 1E+02 0.0022 28.0 10.3 120 283-420 112-244 (268)
242 PRK10936 TMAO reductase system 60.6 1E+02 0.0023 29.1 10.7 62 11-75 8-84 (343)
243 PRK05647 purN phosphoribosylgl 60.2 55 0.0012 28.3 7.9 33 35-73 2-34 (200)
244 COG2099 CobK Precorrin-6x redu 59.8 19 0.00042 32.0 4.9 63 326-388 163-231 (257)
245 PF03358 FMN_red: NADPH-depend 59.5 7 0.00015 31.9 2.2 38 35-74 1-38 (152)
246 PRK04531 acetylglutamate kinas 58.5 33 0.00072 33.2 6.8 54 270-338 38-92 (398)
247 cd05565 PTS_IIB_lactose PTS_II 57.7 38 0.00083 25.4 5.6 74 307-386 4-79 (99)
248 PF02571 CbiJ: Precorrin-6x re 57.4 39 0.00084 30.4 6.7 53 338-390 175-230 (249)
249 TIGR03682 arCOG04112 arCOG0411 57.3 23 0.00051 32.9 5.4 77 304-385 213-289 (308)
250 cd01020 TroA_b Metal binding p 57.2 98 0.0021 28.0 9.4 92 344-440 41-135 (264)
251 PRK00676 hemA glutamyl-tRNA re 56.9 1.8E+02 0.0039 27.6 14.3 133 304-457 174-318 (338)
252 COG0496 SurE Predicted acid ph 56.7 1E+02 0.0022 27.7 8.9 110 35-169 1-125 (252)
253 TIGR03609 S_layer_CsaB polysac 56.5 1.6E+02 0.0036 27.0 11.3 94 272-388 4-108 (298)
254 TIGR00639 PurN phosphoribosylg 56.3 1E+02 0.0022 26.4 8.7 35 35-75 1-35 (190)
255 PF00551 Formyl_trans_N: Formy 55.8 62 0.0013 27.4 7.4 36 35-76 1-36 (181)
256 PRK07742 phosphate butyryltran 55.7 1.7E+02 0.0038 27.1 11.4 76 268-362 14-97 (299)
257 TIGR00658 orni_carb_tr ornithi 55.6 1E+02 0.0022 28.7 9.4 53 13-77 130-182 (304)
258 TIGR00730 conserved hypothetic 55.5 63 0.0014 27.3 7.3 47 347-395 88-142 (178)
259 PRK11858 aksA trans-homoaconit 55.3 1.2E+02 0.0025 29.4 10.0 100 284-390 115-224 (378)
260 KOG0832 Mitochondrial/chloropl 55.3 57 0.0012 28.5 6.8 43 332-385 160-202 (251)
261 PRK13396 3-deoxy-7-phosphohept 54.9 2E+02 0.0042 27.4 14.4 106 271-388 102-217 (352)
262 cd03129 GAT1_Peptidase_E_like 54.9 1.4E+02 0.0031 25.8 10.5 84 304-388 29-123 (210)
263 PRK08673 3-deoxy-7-phosphohept 54.7 1.9E+02 0.0041 27.4 10.9 103 275-387 97-208 (335)
264 PRK06849 hypothetical protein; 54.3 76 0.0017 30.7 8.8 36 32-76 2-37 (389)
265 PRK10017 colanic acid biosynth 53.3 2.2E+02 0.0047 28.1 11.6 111 272-388 3-157 (426)
266 PRK10840 transcriptional regul 53.3 1.5E+02 0.0032 25.6 10.2 108 304-422 3-125 (216)
267 TIGR03316 ygeW probable carbam 52.9 75 0.0016 30.3 8.1 63 13-77 149-211 (357)
268 PRK00779 ornithine carbamoyltr 52.5 66 0.0014 29.9 7.5 53 13-77 134-186 (304)
269 PRK05447 1-deoxy-D-xylulose 5- 52.4 76 0.0017 30.5 8.0 40 347-386 81-122 (385)
270 TIGR00272 DPH2 diphthamide bio 52.1 31 0.00068 34.5 5.6 77 304-384 282-358 (496)
271 TIGR01088 aroQ 3-dehydroquinat 52.0 64 0.0014 25.9 6.2 96 320-421 28-138 (141)
272 COG2120 Uncharacterized protei 51.9 67 0.0015 28.6 7.3 44 29-77 5-50 (237)
273 PF07355 GRDB: Glycine/sarcosi 51.8 71 0.0015 30.1 7.4 39 131-169 71-119 (349)
274 COG4394 Uncharacterized protei 51.7 1.9E+02 0.0042 26.4 10.2 45 337-386 239-283 (370)
275 COG0036 Rpe Pentose-5-phosphat 51.6 63 0.0014 28.2 6.7 74 283-369 72-145 (220)
276 cd01972 Nitrogenase_VnfE_like 51.3 2.5E+02 0.0054 27.6 12.5 164 220-386 65-244 (426)
277 PRK13940 glutamyl-tRNA reducta 50.9 2.5E+02 0.0054 27.5 16.5 97 305-419 206-302 (414)
278 PF01408 GFO_IDH_MocA: Oxidore 50.7 1.1E+02 0.0024 23.3 8.6 33 134-166 56-91 (120)
279 cd05564 PTS_IIB_chitobiose_lic 50.3 59 0.0013 24.2 5.7 76 307-388 3-80 (96)
280 PTZ00408 NAD-dependent deacety 49.9 1.7E+02 0.0037 26.2 9.5 55 335-389 150-209 (242)
281 TIGR00087 surE 5'/3'-nucleotid 49.6 1.4E+02 0.0031 26.7 8.9 37 35-78 1-37 (244)
282 TIGR03837 efp_adjacent_2 conse 49.4 89 0.0019 29.7 7.7 45 337-386 243-287 (371)
283 COG1087 GalE UDP-glucose 4-epi 49.0 65 0.0014 29.7 6.5 27 48-76 7-33 (329)
284 COG4635 HemG Flavodoxin [Energ 48.7 17 0.00038 29.6 2.7 36 35-72 1-36 (175)
285 TIGR00670 asp_carb_tr aspartat 48.7 83 0.0018 29.2 7.5 55 13-77 132-186 (301)
286 PRK13933 stationary phase surv 48.6 1.5E+02 0.0032 26.8 8.8 37 35-78 1-37 (253)
287 PF02951 GSH-S_N: Prokaryotic 47.8 27 0.00059 27.2 3.6 40 35-76 1-40 (119)
288 COG0300 DltE Short-chain dehyd 47.7 1.2E+02 0.0026 27.6 8.1 76 55-153 20-97 (265)
289 PRK06988 putative formyltransf 47.4 1.4E+02 0.0031 27.9 9.0 28 34-69 2-29 (312)
290 PRK06027 purU formyltetrahydro 47.0 1.4E+02 0.0031 27.4 8.8 40 31-76 86-125 (286)
291 COG0078 ArgF Ornithine carbamo 46.8 1.1E+02 0.0024 28.2 7.7 65 13-89 135-199 (310)
292 PLN02929 NADH kinase 46.7 61 0.0013 30.0 6.2 69 350-422 59-136 (301)
293 PF00205 TPP_enzyme_M: Thiamin 46.6 52 0.0011 26.2 5.3 55 306-362 14-84 (137)
294 TIGR00853 pts-lac PTS system, 46.5 56 0.0012 24.2 5.0 76 307-388 7-84 (95)
295 PRK00005 fmt methionyl-tRNA fo 46.5 1.2E+02 0.0027 28.2 8.5 26 35-68 1-26 (309)
296 COG1519 KdtA 3-deoxy-D-manno-o 46.5 2.9E+02 0.0063 26.9 10.7 104 267-386 48-153 (419)
297 TIGR00322 diphth2_R diphthamid 46.4 41 0.00089 31.7 5.2 77 304-384 233-309 (332)
298 PRK13397 3-deoxy-7-phosphohept 46.3 2.2E+02 0.0048 25.6 14.4 99 279-387 23-130 (250)
299 COG0673 MviM Predicted dehydro 46.3 1.1E+02 0.0024 28.7 8.4 56 323-386 41-98 (342)
300 PF09949 DUF2183: Uncharacteri 46.3 67 0.0014 24.2 5.3 41 288-338 52-92 (100)
301 PF03435 Saccharop_dh: Sacchar 45.8 63 0.0014 31.2 6.7 72 304-385 22-97 (386)
302 TIGR02090 LEU1_arch isopropylm 45.3 2.4E+02 0.0051 27.1 10.3 100 284-390 111-220 (363)
303 PLN02285 methionyl-tRNA formyl 45.2 1.3E+02 0.0029 28.4 8.5 101 29-165 1-119 (334)
304 cd00466 DHQase_II Dehydroquina 45.2 47 0.001 26.6 4.5 98 320-422 28-139 (140)
305 PF02826 2-Hacid_dh_C: D-isome 45.1 66 0.0014 27.1 5.9 39 347-385 83-126 (178)
306 PRK09271 flavodoxin; Provision 45.0 18 0.0004 29.9 2.5 32 35-68 1-32 (160)
307 PF13407 Peripla_BP_4: Peripla 44.7 2E+02 0.0044 25.4 9.6 33 356-388 56-89 (257)
308 PRK06756 flavodoxin; Provision 44.7 19 0.00042 29.2 2.5 33 35-69 2-34 (148)
309 cd05312 NAD_bind_1_malic_enz N 44.6 1.3E+02 0.0027 27.6 7.8 38 347-384 95-137 (279)
310 COG1647 Esterase/lipase [Gener 44.6 79 0.0017 27.7 6.1 28 35-66 16-43 (243)
311 PRK13934 stationary phase surv 44.5 2E+02 0.0043 26.2 8.9 37 35-78 1-37 (266)
312 PF05014 Nuc_deoxyrib_tr: Nucl 44.5 82 0.0018 24.1 5.9 39 350-388 56-98 (113)
313 TIGR00725 conserved hypothetic 44.3 50 0.0011 27.3 4.9 46 348-395 84-131 (159)
314 PRK08410 2-hydroxyacid dehydro 44.2 1.1E+02 0.0024 28.6 7.8 42 347-388 188-234 (311)
315 PRK00346 surE 5'(3')-nucleotid 44.0 2.1E+02 0.0045 25.8 9.0 37 35-78 1-37 (250)
316 TIGR00658 orni_carb_tr ornithi 43.8 2.2E+02 0.0047 26.5 9.6 78 269-364 148-225 (304)
317 PRK02255 putrescine carbamoylt 43.6 1.2E+02 0.0025 28.9 7.7 56 13-77 133-188 (338)
318 KOG2884 26S proteasome regulat 43.3 1.9E+02 0.0042 25.1 8.1 47 27-75 100-146 (259)
319 TIGR02660 nifV_homocitr homoci 43.2 2.3E+02 0.0051 27.1 10.0 100 284-390 112-221 (365)
320 TIGR00460 fmt methionyl-tRNA f 43.1 1.6E+02 0.0035 27.5 8.6 25 35-67 1-25 (313)
321 PF10649 DUF2478: Protein of u 43.0 45 0.00097 27.5 4.3 43 348-390 85-134 (159)
322 cd07939 DRE_TIM_NifV Streptomy 42.9 2.5E+02 0.0055 25.3 12.0 117 284-420 109-237 (259)
323 COG0320 LipA Lipoate synthase 42.8 1.1E+02 0.0024 27.8 6.8 31 48-79 130-160 (306)
324 PF04321 RmlD_sub_bind: RmlD s 42.2 65 0.0014 29.6 5.9 31 35-74 1-31 (286)
325 PRK14805 ornithine carbamoyltr 42.2 1.1E+02 0.0024 28.4 7.3 53 13-77 129-181 (302)
326 PRK05583 ribosomal protein L7A 42.1 1.5E+02 0.0033 22.4 7.2 78 283-376 21-98 (104)
327 cd01968 Nitrogenase_NifE_I Nit 41.8 3.4E+02 0.0074 26.5 13.8 161 219-385 61-235 (410)
328 PRK13125 trpA tryptophan synth 41.8 1.9E+02 0.0042 25.8 8.7 81 281-371 87-167 (244)
329 PF04392 ABC_sub_bind: ABC tra 41.6 53 0.0011 30.3 5.2 38 132-169 51-89 (294)
330 PRK12595 bifunctional 3-deoxy- 41.6 3.3E+02 0.0071 26.1 14.4 96 282-387 129-233 (360)
331 PRK05282 (alpha)-aspartyl dipe 41.6 2.6E+02 0.0055 24.9 10.5 82 304-389 31-123 (233)
332 TIGR01658 EYA-cons_domain eyes 41.4 86 0.0019 27.9 5.9 37 288-335 216-252 (274)
333 PRK05331 putative phosphate ac 41.3 3.2E+02 0.0068 25.9 12.2 54 276-342 7-61 (334)
334 cd00316 Oxidoreductase_nitroge 41.3 2.3E+02 0.005 27.4 9.9 101 281-386 127-231 (399)
335 PRK06932 glycerate dehydrogena 41.3 99 0.0021 29.0 6.9 43 347-389 189-236 (314)
336 PRK10494 hypothetical protein; 41.3 1.9E+02 0.0041 26.2 8.5 98 285-388 107-210 (259)
337 PRK08883 ribulose-phosphate 3- 41.1 1.9E+02 0.0041 25.4 8.3 75 283-370 69-143 (220)
338 PRK02910 light-independent pro 40.7 4.1E+02 0.0088 27.0 12.9 79 304-385 158-239 (519)
339 COG1273 Ku-homolog [Replicatio 40.4 43 0.00093 29.9 4.0 129 323-461 79-224 (278)
340 PF08902 DUF1848: Domain of un 39.9 2.6E+02 0.0057 25.4 8.9 106 220-340 6-116 (266)
341 TIGR03569 NeuB_NnaB N-acetylne 39.9 1.7E+02 0.0036 27.6 8.1 63 322-388 78-142 (329)
342 PRK09722 allulose-6-phosphate 39.9 2.2E+02 0.0048 25.2 8.5 75 283-369 70-144 (229)
343 PRK09739 hypothetical protein; 39.8 36 0.00077 29.3 3.6 38 34-71 3-40 (199)
344 TIGR02990 ectoine_eutA ectoine 39.7 53 0.0011 29.3 4.6 49 341-390 162-217 (239)
345 COG4097 Predicted ferric reduc 39.7 1.9E+02 0.004 27.7 8.1 82 283-377 326-417 (438)
346 PF01012 ETF: Electron transfe 39.6 89 0.0019 25.8 5.8 93 284-385 17-120 (164)
347 PRK01231 ppnK inorganic polyph 39.6 1.1E+02 0.0024 28.3 6.9 52 354-422 61-117 (295)
348 PF11997 DUF3492: Domain of un 39.5 1.3E+02 0.0029 27.3 7.3 40 35-76 1-42 (268)
349 KOG2648 Diphthamide biosynthes 39.5 1.1E+02 0.0024 29.8 6.8 59 304-363 267-325 (453)
350 PRK04284 ornithine carbamoyltr 38.7 1.5E+02 0.0032 28.1 7.6 55 13-77 136-190 (332)
351 TIGR01278 DPOR_BchB light-inde 38.4 4.3E+02 0.0094 26.7 11.5 78 304-384 158-238 (511)
352 PRK00856 pyrB aspartate carbam 38.2 93 0.002 29.0 6.1 54 13-76 138-191 (305)
353 TIGR01283 nifE nitrogenase mol 38.2 4.2E+02 0.009 26.4 15.2 161 219-385 96-274 (456)
354 PRK04284 ornithine carbamoyltr 38.0 3.1E+02 0.0067 25.9 9.6 80 268-364 154-233 (332)
355 PRK03515 ornithine carbamoyltr 37.8 2.9E+02 0.0063 26.2 9.4 79 269-364 156-234 (336)
356 COG0716 FldA Flavodoxins [Ener 37.7 31 0.00068 28.1 2.7 33 34-68 1-33 (151)
357 PRK04020 rps2P 30S ribosomal p 37.5 2E+02 0.0043 25.0 7.6 91 282-385 50-143 (204)
358 PRK13935 stationary phase surv 37.4 3.1E+02 0.0068 24.7 9.1 37 35-78 1-37 (253)
359 PRK00048 dihydrodipicolinate r 37.2 83 0.0018 28.4 5.7 42 347-388 52-93 (257)
360 PRK10360 DNA-binding transcrip 37.0 2.4E+02 0.0053 23.4 9.5 73 347-422 37-117 (196)
361 PLN02778 3,5-epimerase/4-reduc 37.0 1.3E+02 0.0027 27.9 7.0 29 32-67 7-35 (298)
362 TIGR01012 Sa_S2_E_A ribosomal 37.0 2.7E+02 0.0059 23.9 8.4 92 282-385 44-137 (196)
363 cd07948 DRE_TIM_HCS Saccharomy 36.9 3.2E+02 0.007 24.7 11.6 69 319-390 140-220 (262)
364 cd02071 MM_CoA_mut_B12_BD meth 36.8 2E+02 0.0043 22.3 7.2 57 285-354 65-121 (122)
365 PF01531 Glyco_transf_11: Glyc 36.8 1.8E+02 0.0039 26.9 8.0 65 283-362 189-254 (298)
366 TIGR00655 PurU formyltetrahydr 36.7 2.9E+02 0.0063 25.4 9.0 39 32-76 82-120 (280)
367 PRK04539 ppnK inorganic polyph 36.5 1.7E+02 0.0038 27.1 7.6 52 354-422 67-123 (296)
368 TIGR03264 met_CoM_red_C methyl 36.4 2E+02 0.0043 24.2 6.9 42 35-77 33-74 (194)
369 PRK06988 putative formyltransf 36.3 2E+02 0.0042 26.9 8.1 49 324-374 46-96 (312)
370 PRK14994 SAM-dependent 16S rib 36.3 1.5E+02 0.0032 27.4 7.1 123 216-359 32-166 (287)
371 COG1091 RfbD dTDP-4-dehydrorha 36.2 1.1E+02 0.0024 28.0 6.2 17 133-149 43-59 (281)
372 PRK01713 ornithine carbamoyltr 36.2 2.5E+02 0.0054 26.6 8.7 80 268-364 155-234 (334)
373 PRK06487 glycerate dehydrogena 36.2 1.3E+02 0.0027 28.3 6.8 43 347-389 189-236 (317)
374 PRK02255 putrescine carbamoylt 36.1 2.6E+02 0.0057 26.5 8.9 79 269-365 154-232 (338)
375 TIGR03446 mycothiol_Mca mycoth 36.1 2.2E+02 0.0048 26.2 8.2 20 129-148 110-129 (283)
376 COG0111 SerA Phosphoglycerate 35.8 1.7E+02 0.0037 27.6 7.5 37 344-380 186-227 (324)
377 COG0647 NagD Predicted sugar p 35.7 3.5E+02 0.0075 24.7 13.3 42 372-422 141-182 (269)
378 PRK06703 flavodoxin; Provision 35.7 35 0.00077 27.7 2.8 33 35-69 2-34 (151)
379 PRK08745 ribulose-phosphate 3- 35.7 2.5E+02 0.0054 24.8 8.1 47 323-369 100-146 (223)
380 PRK13011 formyltetrahydrofolat 35.4 3.1E+02 0.0067 25.3 9.0 39 31-75 86-124 (286)
381 PRK07714 hypothetical protein; 35.4 1.9E+02 0.0041 21.6 7.3 76 283-374 22-97 (100)
382 PRK10834 vancomycin high tempe 35.4 1.2E+02 0.0026 27.1 6.0 96 285-387 68-169 (239)
383 PF00682 HMGL-like: HMGL-like 35.3 3.1E+02 0.0068 24.1 9.9 100 284-390 107-217 (237)
384 cd06300 PBP1_ABC_sugar_binding 35.3 1.6E+02 0.0034 26.4 7.3 40 36-76 1-43 (272)
385 PRK14077 pnk inorganic polypho 35.3 1.9E+02 0.0041 26.7 7.6 53 353-422 62-119 (287)
386 PRK10653 D-ribose transporter 35.2 3.3E+02 0.0072 24.8 9.6 55 16-74 9-63 (295)
387 PRK14804 ornithine carbamoyltr 35.0 1.1E+02 0.0024 28.5 6.2 55 13-77 133-187 (311)
388 PRK03515 ornithine carbamoyltr 34.9 1.8E+02 0.0038 27.6 7.5 56 13-77 136-191 (336)
389 cd03145 GAT1_cyanophycinase Ty 34.9 3.1E+02 0.0067 23.9 10.7 83 304-388 29-126 (217)
390 PLN02928 oxidoreductase family 34.8 1.5E+02 0.0032 28.3 7.1 44 345-388 216-264 (347)
391 cd00762 NAD_bind_malic_enz NAD 34.8 1.6E+02 0.0036 26.4 6.9 39 347-385 96-139 (254)
392 TIGR00460 fmt methionyl-tRNA f 34.7 2.4E+02 0.0051 26.4 8.4 52 324-377 47-100 (313)
393 PRK08005 epimerase; Validated 34.5 2.8E+02 0.006 24.2 8.1 74 283-369 69-142 (210)
394 COG1646 Predicted phosphate-bi 34.4 2.1E+02 0.0045 25.3 7.1 53 304-363 41-94 (240)
395 PRK15438 erythronate-4-phospha 34.4 3.2E+02 0.0069 26.4 9.2 79 304-390 116-211 (378)
396 TIGR01754 flav_RNR ribonucleot 34.2 32 0.00069 27.6 2.2 33 35-69 1-33 (140)
397 TIGR01761 thiaz-red thiazoliny 34.1 2.9E+02 0.0062 26.3 8.8 91 268-386 2-97 (343)
398 PRK12562 ornithine carbamoyltr 34.0 2.7E+02 0.0058 26.4 8.5 79 269-364 156-234 (334)
399 PRK10355 xylF D-xylose transpo 34.0 3.3E+02 0.0072 25.5 9.4 41 32-75 23-63 (330)
400 PRK02649 ppnK inorganic polyph 34.0 1.6E+02 0.0034 27.5 6.9 53 353-422 66-123 (305)
401 TIGR01282 nifD nitrogenase mol 33.8 4.9E+02 0.011 26.0 14.1 99 282-386 181-285 (466)
402 TIGR01769 GGGP geranylgeranylg 33.7 2E+02 0.0044 25.0 7.1 73 278-364 5-78 (205)
403 PF01866 Diphthamide_syn: Puta 33.7 39 0.00085 31.5 3.0 78 304-385 210-287 (307)
404 PRK13931 stationary phase surv 33.3 3.3E+02 0.0072 24.7 8.7 40 35-78 1-41 (261)
405 PRK01911 ppnK inorganic polyph 33.2 2.5E+02 0.0054 26.0 8.1 52 354-422 63-119 (292)
406 PRK02102 ornithine carbamoyltr 33.2 2.5E+02 0.0055 26.5 8.2 80 268-364 154-233 (331)
407 COG0205 PfkA 6-phosphofructoki 33.1 1.9E+02 0.0042 27.4 7.4 40 34-76 2-41 (347)
408 TIGR02990 ectoine_eutA ectoine 32.9 2E+02 0.0044 25.6 7.2 32 35-74 121-152 (239)
409 PRK13010 purU formyltetrahydro 32.9 3.2E+02 0.0069 25.2 8.7 39 32-76 91-129 (289)
410 PRK02102 ornithine carbamoyltr 32.7 2E+02 0.0044 27.1 7.5 54 13-77 137-190 (331)
411 COG0757 AroQ 3-dehydroquinate 32.7 1.7E+02 0.0036 23.5 5.7 97 323-422 32-140 (146)
412 KOG2884 26S proteasome regulat 32.6 3.4E+02 0.0073 23.7 12.9 51 372-422 178-228 (259)
413 cd01965 Nitrogenase_MoFe_beta_ 32.6 4.9E+02 0.011 25.6 13.5 102 280-386 131-252 (428)
414 COG0223 Fmt Methionyl-tRNA for 32.6 2.3E+02 0.0049 26.4 7.6 31 34-74 1-31 (307)
415 PRK11891 aspartate carbamoyltr 32.5 2.1E+02 0.0046 28.1 7.7 58 13-77 219-278 (429)
416 PRK08057 cobalt-precorrin-6x r 32.4 1E+02 0.0022 27.7 5.3 91 34-167 2-98 (248)
417 PRK14194 bifunctional 5,10-met 32.3 4.2E+02 0.009 24.7 9.6 127 285-420 18-153 (301)
418 COG0796 MurI Glutamate racemas 32.2 3.1E+02 0.0066 25.0 8.1 39 130-168 57-98 (269)
419 TIGR03586 PseI pseudaminic aci 31.9 2.9E+02 0.0063 26.0 8.3 63 322-388 79-143 (327)
420 PRK13288 pyrophosphatase PpaX; 31.7 3.3E+02 0.0072 23.4 11.5 47 370-419 166-212 (214)
421 COG1927 Mtd Coenzyme F420-depe 31.7 3.4E+02 0.0074 23.5 8.2 88 36-171 4-97 (277)
422 cd07382 MPP_DR1281 Deinococcus 31.6 1.7E+02 0.0037 26.4 6.6 86 271-363 1-88 (255)
423 PRK02155 ppnK NAD(+)/NADH kina 31.6 2.1E+02 0.0046 26.4 7.4 52 354-422 62-118 (291)
424 COG1922 WecG Teichoic acid bio 31.6 3.8E+02 0.0083 24.2 8.5 111 215-342 58-168 (253)
425 PRK02261 methylaspartate mutas 31.6 2.7E+02 0.0059 22.3 7.4 102 245-355 31-132 (137)
426 PF10831 DUF2556: Protein of u 31.5 1.2E+02 0.0026 18.9 3.7 36 3-38 4-48 (53)
427 TIGR03012 sulf_tusD_dsrE sulfu 31.4 60 0.0013 25.6 3.3 39 36-74 1-40 (127)
428 PLN02670 transferase, transfer 31.3 4E+02 0.0087 26.7 9.7 127 30-168 2-138 (472)
429 PRK14478 nitrogenase molybdenu 31.2 2.1E+02 0.0046 28.6 7.9 160 219-384 94-267 (475)
430 cd04724 Tryptophan_synthase_al 31.1 3.2E+02 0.0069 24.4 8.3 69 280-361 89-158 (242)
431 PLN02527 aspartate carbamoyltr 31.1 2.5E+02 0.0053 26.2 7.7 55 13-77 133-188 (306)
432 PF03308 ArgK: ArgK protein; 31.0 1.2E+02 0.0027 27.3 5.4 42 33-77 28-69 (266)
433 PLN00016 RNA-binding protein; 30.9 62 0.0014 31.1 4.0 44 28-76 46-89 (378)
434 PF01220 DHquinase_II: Dehydro 30.9 2.9E+02 0.0062 22.3 8.2 97 320-421 29-139 (140)
435 COG1058 CinA Predicted nucleot 30.8 1.7E+02 0.0036 26.4 6.2 27 50-76 19-45 (255)
436 PF02630 SCO1-SenC: SCO1/SenC; 30.7 2.2E+02 0.0049 23.8 6.9 87 267-359 51-137 (174)
437 PRK02122 glucosamine-6-phospha 30.5 2.7E+02 0.0058 29.3 8.6 42 33-77 368-409 (652)
438 cd07937 DRE_TIM_PC_TC_5S Pyruv 30.5 4.2E+02 0.0092 24.2 16.3 119 284-420 117-247 (275)
439 PF02441 Flavoprotein: Flavopr 30.4 55 0.0012 25.8 3.0 33 35-71 1-33 (129)
440 PRK08091 ribulose-phosphate 3- 30.4 3.4E+02 0.0074 24.0 8.1 74 283-369 79-154 (228)
441 PF13277 YmdB: YmdB-like prote 30.3 1.1E+02 0.0024 27.4 5.0 84 273-363 1-86 (253)
442 PF01408 GFO_IDH_MocA: Oxidore 30.2 1.5E+02 0.0033 22.5 5.5 68 303-386 24-93 (120)
443 COG2102 Predicted ATPases of P 29.7 3.6E+02 0.0077 23.7 7.8 78 279-369 70-149 (223)
444 PLN02208 glycosyltransferase f 29.4 4E+02 0.0087 26.4 9.3 38 34-76 4-41 (442)
445 TIGR00696 wecB_tagA_cpsF bacte 29.3 2.7E+02 0.0059 23.5 7.1 76 22-151 36-111 (177)
446 PLN02683 pyruvate dehydrogenas 29.3 4.9E+02 0.011 24.9 9.6 76 340-422 264-351 (356)
447 COG1553 DsrE Uncharacterized c 29.3 71 0.0015 25.0 3.1 40 35-74 1-41 (126)
448 COG3207 DIT1 Pyoverdine/dityro 29.3 4.3E+02 0.0094 23.9 9.3 101 243-357 55-164 (330)
449 TIGR00036 dapB dihydrodipicoli 29.1 93 0.002 28.3 4.6 36 353-388 66-101 (266)
450 TIGR02932 vnfK_nitrog V-contai 29.1 4.1E+02 0.009 26.4 9.4 99 280-386 143-261 (457)
451 TIGR03141 cytochro_ccmD heme e 28.9 69 0.0015 19.9 2.6 25 1-25 1-25 (45)
452 PLN03228 methylthioalkylmalate 28.8 5.6E+02 0.012 25.9 10.1 74 316-390 235-322 (503)
453 PRK08125 bifunctional UDP-gluc 28.8 2.9E+02 0.0062 29.1 8.7 53 324-378 44-98 (660)
454 PRK13761 hypothetical protein; 28.6 4E+02 0.0088 23.5 7.8 95 353-460 148-244 (248)
455 TIGR00433 bioB biotin syntheta 28.5 3.3E+02 0.0072 24.9 8.3 72 280-356 60-132 (296)
456 PRK13015 3-dehydroquinate dehy 28.3 3.3E+02 0.0071 22.2 8.8 96 321-422 31-141 (146)
457 PF03641 Lysine_decarbox: Poss 28.3 55 0.0012 26.0 2.6 47 347-395 45-100 (133)
458 PF06180 CbiK: Cobalt chelatas 28.3 97 0.0021 28.1 4.4 80 279-362 119-204 (262)
459 PF11238 DUF3039: Protein of u 28.3 44 0.00095 22.0 1.6 16 371-386 16-31 (58)
460 PLN02828 formyltetrahydrofolat 28.2 4.6E+02 0.01 23.9 9.3 57 32-94 68-124 (268)
461 COG1701 Uncharacterized protei 28.2 4E+02 0.0087 23.2 7.7 94 353-458 151-245 (256)
462 cd01977 Nitrogenase_VFe_alpha 28.0 5.8E+02 0.013 24.9 11.0 77 304-386 162-240 (415)
463 PF12273 RCR: Chitin synthesis 28.0 43 0.00093 26.6 1.9 12 9-20 5-16 (130)
464 PRK13302 putative L-aspartate 27.9 3.3E+02 0.0071 24.8 7.9 38 29-74 1-38 (271)
465 PRK15395 methyl-galactoside AB 27.9 4.2E+02 0.0092 24.7 9.1 43 30-74 20-62 (330)
466 cd03466 Nitrogenase_NifN_2 Nit 27.5 6E+02 0.013 25.0 13.2 100 281-386 134-253 (429)
467 cd01973 Nitrogenase_VFe_beta_l 27.5 2.8E+02 0.0061 27.6 7.9 98 280-386 140-257 (454)
468 PRK12344 putative alpha-isopro 27.4 5.7E+02 0.012 26.0 10.1 70 320-390 158-237 (524)
469 PF04413 Glycos_transf_N: 3-De 27.2 2.3E+02 0.005 24.1 6.4 102 269-386 22-125 (186)
470 PF01993 MTD: methylene-5,6,7, 27.0 81 0.0018 27.8 3.5 37 136-172 55-97 (276)
471 TIGR01768 GGGP-family geranylg 27.0 2E+02 0.0044 25.3 6.0 75 277-364 5-80 (223)
472 PRK07283 hypothetical protein; 26.9 2.7E+02 0.0059 20.7 6.0 63 304-374 34-96 (98)
473 TIGR02706 P_butyryltrans phosp 26.9 5.1E+02 0.011 23.9 11.7 76 269-363 13-95 (294)
474 PF03401 TctC: Tripartite tric 26.8 4.9E+02 0.011 23.7 12.2 141 270-435 79-243 (274)
475 cd01080 NAD_bind_m-THF_DH_Cycl 26.8 3.8E+02 0.0081 22.4 8.8 54 303-364 43-96 (168)
476 PF10727 Rossmann-like: Rossma 26.8 74 0.0016 25.2 3.0 34 31-74 7-40 (127)
477 PRK03501 ppnK inorganic polyph 26.8 4.6E+02 0.0099 23.9 8.5 53 354-422 38-96 (264)
478 PRK08654 pyruvate carboxylase 26.7 6.7E+02 0.015 25.3 10.9 115 280-421 59-185 (499)
479 TIGR00182 plsX fatty acid/phos 26.6 5.5E+02 0.012 24.2 9.6 46 281-341 3-48 (322)
480 PRK14076 pnk inorganic polypho 26.5 3E+02 0.0065 28.4 8.1 113 285-422 276-403 (569)
481 PF01297 TroA: Periplasmic sol 26.5 2.4E+02 0.0052 25.2 6.8 90 347-439 39-131 (256)
482 PRK03372 ppnK inorganic polyph 26.4 4E+02 0.0086 24.9 8.2 52 354-422 71-127 (306)
483 PRK07308 flavodoxin; Validated 26.4 75 0.0016 25.6 3.2 32 34-69 3-34 (146)
484 TIGR02026 BchE magnesium-proto 26.3 6.8E+02 0.015 25.2 22.7 90 280-376 220-316 (497)
485 PTZ00182 3-methyl-2-oxobutanat 26.3 5.8E+02 0.013 24.4 10.8 77 338-420 267-354 (355)
486 PRK12862 malic enzyme; Reviewe 26.0 2.7E+02 0.0059 29.8 7.8 38 347-385 253-290 (763)
487 cd01974 Nitrogenase_MoFe_beta 26.0 3.4E+02 0.0073 26.8 8.2 89 49-165 310-399 (435)
488 PRK03378 ppnK inorganic polyph 26.0 3.3E+02 0.0073 25.1 7.6 52 354-422 62-118 (292)
489 PRK11104 hemG protoporphyrinog 26.0 50 0.0011 27.9 2.1 31 35-68 1-31 (177)
490 COG1052 LdhA Lactate dehydroge 26.0 2.8E+02 0.0062 26.1 7.2 42 349-390 194-240 (324)
491 PRK13302 putative L-aspartate 25.8 2.2E+02 0.0047 26.0 6.4 71 303-388 30-100 (271)
492 PRK00865 glutamate racemase; P 25.7 2.6E+02 0.0056 25.3 6.8 39 130-169 57-98 (261)
493 PRK00915 2-isopropylmalate syn 25.7 5.9E+02 0.013 25.8 9.9 72 318-390 147-232 (513)
494 PRK13814 pyrB aspartate carbam 25.6 2E+02 0.0043 26.9 6.1 54 13-76 139-193 (310)
495 PRK00211 sulfur relay protein 25.5 1.1E+02 0.0025 23.7 3.9 40 35-74 2-41 (119)
496 PF05728 UPF0227: Uncharacteri 25.4 4E+02 0.0086 22.7 7.5 32 36-69 1-32 (187)
497 PRK14189 bifunctional 5,10-met 25.3 5.4E+02 0.012 23.7 10.2 110 303-419 33-151 (285)
498 cd01408 SIRT1 SIRT1: Eukaryoti 25.0 4.7E+02 0.01 23.2 8.2 55 335-389 151-211 (235)
499 COG2086 FixA Electron transfer 24.9 4.1E+02 0.0089 24.1 7.7 41 129-169 100-146 (260)
500 PRK00005 fmt methionyl-tRNA fo 24.7 3.4E+02 0.0074 25.3 7.6 12 324-335 47-58 (309)
No 1
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.9e-63 Score=482.59 Aligned_cols=455 Identities=79% Similarity=1.301 Sum_probs=395.2
Q ss_pred HHHHHHHHHHHHHH----hhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhH
Q 012436 9 WAVITAVLASILIL----ASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSL 84 (464)
Q Consensus 9 ~~~~~~~~~~~~~~----~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~ 84 (464)
|.+...++.+.+.+ ++-..+.+..++++|+|+||+++.|||+||++++.+.+|++.|++++|++||++.|.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~ 83 (463)
T PLN02949 4 WLILYHLLTSIVLLLVAIALSVLRARRSRKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSL 83 (463)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHhcccCCCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHH
Confidence 33334444444333 33347788888999999999999999999999999999999999999999999887777777
Q ss_pred HHHHHhhcCcccCCCceeeeeecccccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceE
Q 012436 85 LARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRV 164 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~ 164 (464)
.....+.+++.+.....++.+..+.|++.+.+++++.+++.++.++..++.+.+..||+++++.++++.+|+++..++|+
T Consensus 84 l~~~~~~~~i~~~~~~~~v~l~~~~~~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt~~~~~~~pl~~~~~~~v 163 (463)
T PLN02949 84 AARARDRFGVELLSPPKVVHLRKRKWIEEETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYAFTYPLARLFGCKV 163 (463)
T ss_pred HHHHHhhcceecCCCceEEEeccccccccccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccHHHHHHhcCCcE
Confidence 77788899998887777888877899999999999999999999999999888788999999999999999888889999
Q ss_pred EEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCC
Q 012436 165 ICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPD 244 (464)
Q Consensus 165 v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~ 244 (464)
++|+|+|.+..||...+.++...|++........+....+..|++.+.++++...+.+|.++++|++.++.+.+.++.++
T Consensus 164 ~~yvH~p~~~~dm~~~v~~~~~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~ 243 (463)
T PLN02949 164 VCYTHYPTISSDMISRVRDRSSMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPE 243 (463)
T ss_pred EEEEeCCcchHHHHHHHhhcccccCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999888777777778888999999999999999999999999999999988877667
Q ss_pred CeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHH
Q 012436 245 RIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQS 324 (464)
Q Consensus 245 ~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~ 324 (464)
++.+++||+|.+.+...+.....++..++++||+.++||++.+++|+..+.++.....|+++|+|+|+++..++.++.++
T Consensus 244 ~i~vvyp~vd~~~~~~~~~~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~e 323 (463)
T PLN02949 244 RIKRVYPPCDTSGLQALPLERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQK 323 (463)
T ss_pred CeEEEcCCCCHHHcccCCccccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHH
Confidence 88999999987655332322234457899999999999999999999988764322226899999999876666778899
Q ss_pred HHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccce
Q 012436 325 LKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTG 404 (464)
Q Consensus 325 l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g 404 (464)
++++++++++.++|.|+|+++.+++.++|+.||++++||..|+||++++|||++|+|||+++.+|..++++.++.++.+|
T Consensus 324 L~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG 403 (463)
T PLN02949 324 LKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTG 403 (463)
T ss_pred HHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999867888754445689
Q ss_pred eecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcC
Q 012436 405 FLAQNAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCHAA 463 (464)
Q Consensus 405 ~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 463 (464)
++++|+++++++|.++++++++.++++++++++.+++|||+.+.+++.+.++++++...
T Consensus 404 ~l~~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i~~l~~~~~ 462 (463)
T PLN02949 404 FLATTVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKDAIRPILNSAS 462 (463)
T ss_pred ccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999845678889999999999889999999999999999887643
No 2
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=1.8e-55 Score=427.05 Aligned_cols=410 Identities=51% Similarity=0.879 Sum_probs=352.2
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeee-cccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLY-RRKWIEES 114 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (464)
-|+|+||+++.|||+||++++.+.+|++.+.+++|+++|++.+.......++....|.+....+..++.+. .+.|...+
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 58999999999999999999999999999778999999999876666777788888888888777777664 66788888
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~ 193 (464)
.++++..+.+++..+...++.+.+.+|||+++++++++.+++++ ..++|+|+|+|+|.++.|+...+......|+|...
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~~~~ 161 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYPTISTDMLQKVRSREASYNNSAT 161 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhcCCeEEEEecCCcchHHHHHHHhhccccccCccc
Confidence 99999999999988888888877778999999999898888766 57899999999999888888777777778888877
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEE
Q 012436 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAII 273 (464)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~ 273 (464)
..........+..|++.+.+++++.++.+|.++++|++.++.+.+.++...++.+++||+|.+.+.+.+.....+..+++
T Consensus 162 ~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~~~~~~~~~il 241 (419)
T cd03806 162 IARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPLDEKTRENQIL 241 (419)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhcccccccccCCcEEE
Confidence 77777767788899999999999999999999999999999999887655589999999998776533322234568999
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhcC-CCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHH
Q 012436 274 SVAQFRPEKAHPLQLEAFSVALRKLDA-DLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKL 352 (464)
Q Consensus 274 ~~G~~~~~K~~~~ll~a~~~l~~~~~~-~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~ 352 (464)
|+||+.+.||++.+++|+..+.+...+ ..++++|+|+|+++..++.++.++|+++++++++.++|+|+|++|.+++.++
T Consensus 242 ~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~ 321 (419)
T cd03806 242 SIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEE 321 (419)
T ss_pred EEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHH
Confidence 999999999999999999999876521 0125999999998776666788999999999999999999999999999999
Q ss_pred HhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceec---ccCCccceeecCCHHHHHHHHHHHHcCCHHH-H
Q 012436 353 LGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVL---EEDGQQTGFLAQNAEEYADAIVKIISMPETE-R 428 (464)
Q Consensus 353 l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~---~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~-~ 428 (464)
|+.||++++||..|+||++++|||+||+|||+++.+|..++++. + +.+|++++|+++++++|.++++ +++. +
T Consensus 322 l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~---g~~G~l~~d~~~la~ai~~ll~-~~~~~~ 397 (419)
T cd03806 322 LSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDG---GPTGFLASTAEEYAEAIEKILS-LSEEER 397 (419)
T ss_pred HHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCC---CCceEEeCCHHHHHHHHHHHHh-CCHHHH
Confidence 99999999999999999999999999999999999887678988 6 8999999999999999999998 6554 4
Q ss_pred HHHHHHHHHHHHccCHHHHHH
Q 012436 429 LEMAAAARRRAARFSEQRFYE 449 (464)
Q Consensus 429 ~~~~~~~~~~~~~~s~~~~~~ 449 (464)
+.+++++++..++||++.+.+
T Consensus 398 ~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 398 LRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred HHHHHHHHHHHHhhCHHHhcc
Confidence 445444444339999998754
No 3
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=9.5e-54 Score=371.57 Aligned_cols=421 Identities=43% Similarity=0.749 Sum_probs=380.6
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCc-eeeeeeccc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPP-KVVHLYRRK 109 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 109 (464)
++..+.++|+|||++.|||+||+++..++.+++...++..++|+++.+.++..+..+.++.|++.++.+. .+++++.|.
T Consensus 40 ~k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~ 119 (465)
T KOG1387|consen 40 EKNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRY 119 (465)
T ss_pred hhhceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeee
Confidence 5556789999999999999999999999999999999999999999999999999999999999998765 899999999
Q ss_pred ccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhh-ccCceEEEEeeCCcchhhhhhccccccccc
Q 012436 110 WIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHYPTISLDMISRVREGSSMY 188 (464)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~ 188 (464)
+...+.|+++..+.|.+..+..+++.+-++.||+.|++.++++.+|+.+ +.++|++.|.|+|.+++||...+.+++.
T Consensus 120 lVea~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~-- 197 (465)
T KOG1387|consen 120 LVEASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQK-- 197 (465)
T ss_pred eeecccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhhhh--
Confidence 9999999999999999999999999999999999999999999999555 8999999999999999999998886543
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCC
Q 012436 189 NNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTE 268 (464)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~ 268 (464)
.+.+..-+..|+++|..++..+-+.||.++++|.++..++.+.++. .++.++++|++.+..........++
T Consensus 198 --------s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~-~~~~iVyPPC~~e~lks~~~te~~r 268 (465)
T KOG1387|consen 198 --------SGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQS-NTCSIVYPPCSTEDLKSKFGTEGER 268 (465)
T ss_pred --------cchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhc-cceeEEcCCCCHHHHHHHhcccCCc
Confidence 1255556677999999999999999999999999999999999885 7788899999998776554455567
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcC--CCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDA--DLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~--~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
.+.++++|+++|+|+.. +++.++....+.+. ..++++|.++|++.+++|+++.+.|++.+++++++.+|.|.-.+|.
T Consensus 269 ~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py 347 (465)
T KOG1387|consen 269 ENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPY 347 (465)
T ss_pred ceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCH
Confidence 78999999999999999 55555544333222 3368999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHH
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPET 426 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~ 426 (464)
+++..+|+.|.+.++..+.|.||+++.||||+|+-+|+.+.||+.-|++.++++..+||+.++.++.++++.+++.+|.+
T Consensus 348 ~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~ 427 (465)
T KOG1387|consen 348 EKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYD 427 (465)
T ss_pred HHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecCChHHHHHHHHHHHHcCHH
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999998898
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcC
Q 012436 427 ERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCHAA 463 (464)
Q Consensus 427 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 463 (464)
++..++++||..+.+|+...+.+.+...+..++....
T Consensus 428 ~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll~e~~ 464 (465)
T KOG1387|consen 428 ERNMMRRNARKSLARFGELKFDKDWENPICKLLEEEE 464 (465)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhhcccc
Confidence 8999999999999999999999999999998887643
No 4
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=2e-43 Score=343.06 Aligned_cols=365 Identities=15% Similarity=0.129 Sum_probs=271.6
Q ss_pred eEEEecCCCCC-CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 36 SVAFFHPNTND-GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 36 kI~~~~~~~~~-~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
||+++.+++.+ .||+++++..++++|.+.|| +|+++++..+.... .+ ....+++++.++...+....
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~--~V~v~~~~~~~~~~--~~--------~~~~~i~v~~~p~~~~~~~~ 68 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGH--KVVVITHAYGNRVG--IR--------YLTNGLKVYYLPFVVFYNQS 68 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCC--eeEEEeccCCcCCC--cc--------cccCceeEEEecceeccCCc
Confidence 78988885554 49999999999999999995 55555543210000 00 00112244444432221111
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccc----hhhhccCceEEEEeeCCcchhhhhhcccccccccCC
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTY----PLARIFGCRVICYTHYPTISLDMISRVREGSSMYNN 190 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~----~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~ 190 (464)
... ..+.....+.+.+++.+||+||.++...... .+++..++|+|++.|....
T Consensus 69 ~~~------~~~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~----------------- 125 (398)
T cd03796 69 TLP------TFFGTFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFG----------------- 125 (398)
T ss_pred ccc------chhhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEeccccc-----------------
Confidence 111 1122334455567788999999887654432 1456789999999993210
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCCCCCCC
Q 012436 191 NASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEY 269 (464)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~~~~~~ 269 (464)
..... .....+..+..++++|.++++|+...+.+....+. .+++.+||||+|.+.+.+.+....++.
T Consensus 126 --------~~~~~----~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~~~~~~ 193 (398)
T cd03796 126 --------FADAS----SIHTNKLLRFSLADVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSKRDNDK 193 (398)
T ss_pred --------ccchh----hHHhhHHHHHhhccCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCcccCCCCc
Confidence 00000 01122344666799999999999998876444343 678899999999887764333334567
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHH
Q 012436 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (464)
Q Consensus 270 ~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~ 349 (464)
++++|+|++.+.||++.+++|++.+.++. |+++|+++|+++. .+.++++++++++.++|.|.|+++.+++
T Consensus 194 ~~i~~~grl~~~Kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~------~~~l~~~~~~~~l~~~v~~~G~~~~~~~ 263 (398)
T cd03796 194 ITIVVISRLVYRKGIDLLVGIIPEICKKH----PNVRFIIGGDGPK------RILLEEMREKYNLQDRVELLGAVPHERV 263 (398)
T ss_pred eEEEEEeccchhcCHHHHHHHHHHHHhhC----CCEEEEEEeCCch------HHHHHHHHHHhCCCCeEEEeCCCCHHHH
Confidence 89999999999999999999999987765 6999999999864 3678899999999999999999999999
Q ss_pred HHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHHHHH
Q 012436 350 VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERL 429 (464)
Q Consensus 350 ~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~ 429 (464)
.++|+.||++++||..|++|++++|||+||+|||+++.+|. .|++.+ +..++..+|+++++++|.++++ ++.+..
T Consensus 264 ~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~-~e~i~~---~~~~~~~~~~~~l~~~l~~~l~-~~~~~~ 338 (398)
T cd03796 264 RDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI-PEVLPP---DMILLAEPDVESIVRKLEEAIS-ILRTGK 338 (398)
T ss_pred HHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCc-hhheeC---CceeecCCCHHHHHHHHHHHHh-Chhhhh
Confidence 99999999999999999999999999999999999999988 788877 5444444599999999999998 877666
Q ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhhc
Q 012436 430 EMAAAARRRA-ARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 430 ~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
.+.+++++.+ ++|||+.+++++.++|++++...
T Consensus 339 ~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~~~ 372 (398)
T cd03796 339 HDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQTP 372 (398)
T ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCC
Confidence 7788888888 99999999999999999988653
No 5
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=2.7e-42 Score=335.56 Aligned_cols=375 Identities=29% Similarity=0.427 Sum_probs=271.9
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||++++|++.. ||+|+++.+++++|.+.|| +|.++|...+ .......... + ...+.... .+....
T Consensus 1 mkIl~~~~~~~~-gG~e~~~~~la~~L~~~G~--~V~v~~~~~~--~~~~~~~~~~--~-----~~~i~~~~--~~~~~~ 66 (392)
T cd03805 1 LRVAFIHPDLGI-GGAERLVVDAALALQSRGH--EVTIYTSHHD--PSHCFEETKD--G-----TLPVRVRG--DWLPRS 66 (392)
T ss_pred CeEEEECCCCCC-chHHHHHHHHHHHHHhCCC--eEEEEcCCCC--chhcchhccC--C-----eeEEEEEe--EEEcch
Confidence 899999999875 5999999999999999994 5555554321 1111111100 0 01111111 111111
Q ss_pred cCcceehhhhchhhhHHHHH--HhhhcCCcEEEecccccccchhhh-ccCceEEEEeeCCcchhhhhhcccccccccCCC
Q 012436 115 TYPRFTMIGQSFGSVYLSWE--ALCKFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~--~l~~~~~Dvv~~~~~~~~~~~~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~ 191 (464)
...++..+...+........ .+...++|+||.+...... ++.+ ..+.|+++++|+|....+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~-~~~~~~~~~~~i~~~h~~~~~~~~-------------- 131 (392)
T cd03805 67 IFGRFHILCAYLRMLYLALYLLLLPDEKYDVFIVDQVSACV-PLLKLFSPSKILFYCHFPDQLLAQ-------------- 131 (392)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHhcccCCCCEEEEcCcchHH-HHHHHhcCCcEEEEEecChHHhcC--------------
Confidence 11111111222222222211 2456799999966543322 3323 3348999999976521100
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CC-CeEEecCCCCCCCCccCCC------
Q 012436 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PD-RIKRVYPPCDTSGLQVLPL------ 263 (464)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~-~i~~i~~~~d~~~~~~~~~------ 263 (464)
........+...+.++++..++.+|.++++|+..++.+.+.++. .. ++.+|+||+|.+.+.+.+.
T Consensus 132 -------~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~~ 204 (392)
T cd03805 132 -------RGSLLKRLYRKPFDWLEEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPGL 204 (392)
T ss_pred -------CCcHHHHHHHHHHHHHHHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccccccc
Confidence 01122334555667788999999999999999999999887654 33 3458999999887653221
Q ss_pred -CCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC--ccHHHHHHHHHHHHh-cCCCCcEE
Q 012436 264 -ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK--SDEERLQSLKDKSIE-LKVDGNVE 339 (464)
Q Consensus 264 -~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~--~~~~~~~~l~~~~~~-~~l~~~v~ 339 (464)
...++.++++++|++.+.||++.++++++++.++.. ..|+++|+++|+++.. ++.++.+++++.+++ +++.++|.
T Consensus 205 ~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~-~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~ 283 (392)
T cd03805 205 LIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLA-EFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVI 283 (392)
T ss_pred cccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcc-cccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEE
Confidence 123566899999999999999999999999987641 0148999999988643 233567889999999 99999999
Q ss_pred EccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHH
Q 012436 340 FYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIV 418 (464)
Q Consensus 340 ~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~ 418 (464)
|+|+++.+++.++|+.||++++||..|+||++++|||+||+|||+++.+|. .+++.+ +.+|++++ |+++++++|.
T Consensus 284 f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~-~e~i~~---~~~g~~~~~~~~~~a~~i~ 359 (392)
T cd03805 284 FLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGP-LETVVD---GETGFLCEPTPEEFAEAML 359 (392)
T ss_pred EeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCc-HHHhcc---CCceEEeCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988 788888 78998886 9999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHH
Q 012436 419 KIISMPETERLEMAAAARRRA-ARFSEQRFYEDF 451 (464)
Q Consensus 419 ~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~ 451 (464)
++++ +++.++++++++++.+ ++|||+.+++++
T Consensus 360 ~l~~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 360 KLAN-DPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHh-ChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 9999 9999999999999998 899999998764
No 6
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=3.6e-42 Score=332.60 Aligned_cols=370 Identities=16% Similarity=0.158 Sum_probs=267.3
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeec-------
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYR------- 107 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 107 (464)
|||+|+.+.++.. +|+++.+-+.+|.+.|++++++.+-+..+.......+... +.. .+.+++.
T Consensus 1 m~ia~~~~~~P~~--setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~ 70 (406)
T PRK15427 1 MKVGFFLLKFPLS--SETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYN------LAA--KTRWLQDEPQGKVA 70 (406)
T ss_pred CeEEEEeccCCcc--chhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhc------ccc--ceeecCcCccchHH
Confidence 7999999888854 8999999999999999666655544332111110001000 000 1111110
Q ss_pred ----------ccccccc--cCcceehh---hhchhhhHHHHHHhhhcCCcEEEecccccccch--hhh--ccCceEEEEe
Q 012436 108 ----------RKWIEES--TYPRFTMI---GQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LAR--IFGCRVICYT 168 (464)
Q Consensus 108 ----------~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~--~~~~p~v~~~ 168 (464)
..+.... ....+... ...+.....+...+++.+||+||+|.+...... +++ ..+.|.++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~~~~~~~~~~t~ 150 (406)
T PRK15427 71 KLRHRASQTLRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVTAAKLRELGVLRGKIATIF 150 (406)
T ss_pred HHhhhhhhHhhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHHHHHHHHhCCCCCCeEEEE
Confidence 0000000 00000000 000001112233456778999998887554322 322 2345678899
Q ss_pred eCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEE
Q 012436 169 HYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKR 248 (464)
Q Consensus 169 h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~ 248 (464)
|...+... .... .+. ...+..++++|.++++|+..++.+.+....++++.+
T Consensus 151 Hg~d~~~~---------------------~~~~----~~~----~~~~~~~~~ad~vv~~S~~~~~~l~~~g~~~~ki~v 201 (406)
T PRK15427 151 HGIDISSR---------------------EVLN----HYT----PEYQQLFRRGDLMLPISDLWAGRLQKMGCPPEKIAV 201 (406)
T ss_pred cccccccc---------------------hhhh----hhh----HHHHHHHHhCCEEEECCHHHHHHHHHcCCCHHHEEE
Confidence 95432000 0000 011 123445689999999999999999876323678999
Q ss_pred ecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHH
Q 012436 249 VYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDK 328 (464)
Q Consensus 249 i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~ 328 (464)
+|||+|.+.+...+.....+.+.++|+|++.+.||++.+++|++.+.++. ++++++++|+|+. .+++++.
T Consensus 202 i~nGvd~~~f~~~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~----~~~~l~ivG~G~~------~~~l~~~ 271 (406)
T PRK15427 202 SRMGVDMTRFSPRPVKAPATPLEIISVARLTEKKGLHVAIEACRQLKEQG----VAFRYRILGIGPW------ERRLRTL 271 (406)
T ss_pred cCCCCCHHHcCCCccccCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhC----CCEEEEEEECchh------HHHHHHH
Confidence 99999998876433333345678999999999999999999999998765 5899999999863 3789999
Q ss_pred HHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCC------CCCChHHHHHHHhCCcEEEeCCCCCccceecccCCcc
Q 012436 329 SIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID------EHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQ 402 (464)
Q Consensus 329 ~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~------e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~ 402 (464)
++++++.++|.|.|+++++++.++|+.||++++||.. ||+|++++|||+||+|||+|+.+|. .|++.+ +.
T Consensus 272 ~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~-~E~v~~---~~ 347 (406)
T PRK15427 272 IEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGI-PELVEA---DK 347 (406)
T ss_pred HHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCc-hhhhcC---CC
Confidence 9999999999999999999999999999999999964 9999999999999999999999998 799988 89
Q ss_pred ceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHH
Q 012436 403 TGFLAQ--NAEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRP 457 (464)
Q Consensus 403 ~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~ 457 (464)
+|++++ |+++++++|.+++++|++.++++++++++.+ ++|+|+.+++++.+++++
T Consensus 348 ~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 348 SGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred ceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 999986 9999999999999878888999999999999 999999999999999876
No 7
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=4e-41 Score=325.07 Aligned_cols=358 Identities=18% Similarity=0.167 Sum_probs=267.5
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
.||+++.+.+.. ||+|+++.+++++|.+.|+++.++.++.. ..+..... ..++ .++.+.....
T Consensus 2 ~~il~ii~~~~~-GG~e~~~~~l~~~l~~~~~~~~v~~~~~~-----~~~~~~~~-~~~i------~~~~~~~~~~---- 64 (374)
T TIGR03088 2 PLIVHVVYRFDV-GGLENGLVNLINHLPADRYRHAVVALTEV-----SAFRKRIQ-RPDV------AFYALHKQPG---- 64 (374)
T ss_pred ceEEEEeCCCCC-CcHHHHHHHHHhhccccccceEEEEcCCC-----ChhHHHHH-hcCc------eEEEeCCCCC----
Confidence 589998888865 59999999999999999966555543321 22222221 1233 3443332110
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch-hhhccCceEEE-EeeCCcchhhhhhcccccccccCCCc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LARIFGCRVIC-YTHYPTISLDMISRVREGSSMYNNNA 192 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~-~~~~~~~p~v~-~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (464)
..+.....+.+.+++.+||+||+++....... +++..++|..+ +.|... . .
T Consensus 65 ---------~~~~~~~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i~~~h~~~----~----~---------- 117 (374)
T TIGR03088 65 ---------KDVAVYPQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPARIHGEHGRD----V----F---------- 117 (374)
T ss_pred ---------CChHHHHHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeEEEeecCcc----c----c----------
Confidence 01233456667788999999998764332211 34456777533 233110 0 0
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCC-------
Q 012436 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE------- 264 (464)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~------- 264 (464)
.... ..+ .+.++.+...+.+|.++++|+..++.+.+.++. ..++.+|+||+|.+.+.+....
T Consensus 118 -----~~~~--~~~---~~~~~~~~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~ 187 (374)
T TIGR03088 118 -----DLDG--SNW---KYRWLRRLYRPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPP 187 (374)
T ss_pred -----cchh--hHH---HHHHHHHHHHhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHh
Confidence 0000 000 112334455577899999999999999887765 5788999999998876533211
Q ss_pred --CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc
Q 012436 265 --RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (464)
Q Consensus 265 --~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 342 (464)
..++.++++++||+.+.||++.+++|+..+.++..+..++++|+++|+|+.. +++++.++++++.+++.|.|
T Consensus 188 ~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~------~~~~~~~~~~~~~~~v~~~g 261 (374)
T TIGR03088 188 DFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPAR------GACEQMVRAAGLAHLVWLPG 261 (374)
T ss_pred hcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchH------HHHHHHHHHcCCcceEEEcC
Confidence 1245689999999999999999999999988765321247999999998643 67888899999988999999
Q ss_pred CCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHH
Q 012436 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKI 420 (464)
Q Consensus 343 ~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l 420 (464)
+. +|+.++|+.||++++||..|++|++++|||+||+|||+|+.+|. .|++.+ +.+|++++ |+++++++|.++
T Consensus 262 ~~--~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~-~e~i~~---~~~g~~~~~~d~~~la~~i~~l 335 (374)
T TIGR03088 262 ER--DDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGN-PELVQH---GVTGALVPPGDAVALARALQPY 335 (374)
T ss_pred Cc--CCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCc-HHHhcC---CCceEEeCCCCHHHHHHHHHHH
Confidence 76 89999999999999999999999999999999999999999988 788888 88998885 999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHH
Q 012436 421 ISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPIL 459 (464)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~ 459 (464)
++ +++.++++++++++.+ ++|||+.+++++.++|++++
T Consensus 336 ~~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~ 374 (374)
T TIGR03088 336 VS-DPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQLL 374 (374)
T ss_pred Hh-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 99 9999999999999998 89999999999999998763
No 8
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=1.4e-41 Score=331.92 Aligned_cols=386 Identities=14% Similarity=0.055 Sum_probs=266.8
Q ss_pred ceEEEecCCC-CCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHH-hhcCcccCCCceeeeeecccccc
Q 012436 35 TSVAFFHPNT-NDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAV-DRFGVELLHPPKVVHLYRRKWIE 112 (464)
Q Consensus 35 mkI~~~~~~~-~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 112 (464)
|||++++.++ +..||++.++.+++++|.+.|| +|.++|+..........+... .........++++++++......
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~--~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~ 78 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGH--EVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQ 78 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCC--eEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCC
Confidence 8999998654 4458999999999999999995 555555432111000000000 00001111233555443311110
Q ss_pred cccCcceehhhhc-hhhhHHHHHHhhhcCCcEEEecccccccch----hhhccCceEEEEeeCCcchhhhhhcccccccc
Q 012436 113 ESTYPRFTMIGQS-FGSVYLSWEALCKFTPLYYFDTSGYAFTYP----LARIFGCRVICYTHYPTISLDMISRVREGSSM 187 (464)
Q Consensus 113 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~----~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~ 187 (464)
...+.+......+ +.......+.++ .+||+||.+.......+ +++..++|+++++|.-.. +.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~~--~~~~~~------ 149 (412)
T PRK10307 79 PSGLKRLLHLGSFALSSFFPLLAQRR-WRPDRVIGVVPTLFCAPGARLLARLSGARTWLHIQDYEV--DAAFGL------ 149 (412)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccC-CCCCEEEEeCCcHHHHHHHHHHHHhhCCCEEEEeccCCH--HHHHHh------
Confidence 1111111000000 111111112222 68999998765432211 566788999998883110 000000
Q ss_pred cCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCC---
Q 012436 188 YNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE--- 264 (464)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~--- 264 (464)
... ......+...++++++++.+|.++++|+..++.+.+......++.++|||+|.+.+.+.+..
T Consensus 150 ----------~~~--~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~ 217 (412)
T PRK10307 150 ----------GLL--KGGKVARLATAFERSLLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARFQPVADADVD 217 (412)
T ss_pred ----------CCc--cCcHHHHHHHHHHHHHHhhCCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhhcCCCCccchH
Confidence 000 01123344556788889999999999999999998764336789999999998776532211
Q ss_pred -------CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCc
Q 012436 265 -------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGN 337 (464)
Q Consensus 265 -------~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~ 337 (464)
.+++.++++|+|++.+.||++.+++|++.+.+. |+++|+|+|+|+.. ++++++++++++. +
T Consensus 218 ~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~~~-----~~~~l~ivG~g~~~------~~l~~~~~~~~l~-~ 285 (412)
T PRK10307 218 ALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRLRDR-----PDLIFVICGQGGGK------ARLEKMAQCRGLP-N 285 (412)
T ss_pred HHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHhccC-----CCeEEEEECCChhH------HHHHHHHHHcCCC-c
Confidence 123457999999999999999999999987543 58999999998643 7788899988886 7
Q ss_pred EEEccCCChhHHHHHHhcCcEEEEcCCCCC----CChHHHHHHHhCCcEEEeCCCCC-ccceecccCCccceeecC--CH
Q 012436 338 VEFYKNLLYRDLVKLLGGAVVGIHSMIDEH----FGISVVEYMAAGAIPIAHNSAGP-KMDIVLEEDGQQTGFLAQ--NA 410 (464)
Q Consensus 338 v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~----~~~~~~Ea~a~G~PvI~~~~~~~-~~~~v~~~~~~~~g~~~~--~~ 410 (464)
|.|+|+++++++.++|++||++++||..|+ +|.+++|||+||+|||+|+.+|. ..+++. ++|++++ |+
T Consensus 286 v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~-----~~G~~~~~~d~ 360 (412)
T PRK10307 286 VHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE-----GIGVCVEPESV 360 (412)
T ss_pred eEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh-----CCcEEeCCCCH
Confidence 999999999999999999999999998887 56778999999999999998764 235553 4788875 99
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhh
Q 012436 411 EEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPILCH 461 (464)
Q Consensus 411 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~ 461 (464)
++++++|.++++ |++.++++++++++.+ ++|||+.+++++.++|++++++
T Consensus 361 ~~la~~i~~l~~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 361 EALVAAIAALAR-QALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred HHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 999999999999 9999999999999999 7999999999999999998865
No 9
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=9.3e-41 Score=329.89 Aligned_cols=367 Identities=18% Similarity=0.206 Sum_probs=263.4
Q ss_pred cccccceEEEecC-CCC-CCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeec
Q 012436 30 RRNRTTSVAFFHP-NTN-DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYR 107 (464)
Q Consensus 30 ~~~~~mkI~~~~~-~~~-~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (464)
..+++|||+++.. ... ..||++.++.+++++|.+.|| +|.+++...+. ... ..++ .++....
T Consensus 54 ~~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~--eV~vlt~~~~~--~~~------~~g~------~v~~~~~ 117 (465)
T PLN02871 54 SRSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGD--EVLVVTTDEGV--PQE------FHGA------KVIGSWS 117 (465)
T ss_pred ccCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCC--eEEEEecCCCC--Ccc------ccCc------eeeccCC
Confidence 3378899997743 322 337999999999999999995 55555544321 100 0122 1111110
Q ss_pred ccccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhccccc
Q 012436 108 RKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREG 184 (464)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~ 184 (464)
... ..+... ...+.....+.+.+++.+||+||+++....... +++..++|+|++.|.... + +..
T Consensus 118 ~~~---~~~~~~---~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~--~---~~~-- 184 (465)
T PLN02871 118 FPC---PFYQKV---PLSLALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVP--V---YIP-- 184 (465)
T ss_pred cCC---ccCCCc---eeeccCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCch--h---hhh--
Confidence 000 000000 001111235566788899999997765332222 456789999999993210 0 000
Q ss_pred ccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCC
Q 012436 185 SSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL 263 (464)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~ 263 (464)
.+ . ...... .+..+++...+.+|.++++|+..++.+.+.+.. ..++.++|||+|.+.+.+...
T Consensus 185 --~~---------~----~~~~~~-~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~ 248 (465)
T PLN02871 185 --RY---------T----FSWLVK-PMWDIIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFR 248 (465)
T ss_pred --cc---------c----chhhHH-HHHHHHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccc
Confidence 00 0 001111 112345667789999999999999999887533 578999999999887753221
Q ss_pred C---------CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCC
Q 012436 264 E---------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV 334 (464)
Q Consensus 264 ~---------~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l 334 (464)
. ..++.++|+|+|++.+.||++.++++++.+ |+++|+|+|+|+. .+++++++++
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~~~~--------~~~~l~ivG~G~~------~~~l~~~~~~--- 311 (465)
T PLN02871 249 SEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVMERL--------PGARLAFVGDGPY------REELEKMFAG--- 311 (465)
T ss_pred cHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHHHHHhC--------CCcEEEEEeCChH------HHHHHHHhcc---
Confidence 1 123567899999999999999999998765 5899999999863 3667776653
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHH
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEE 412 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~ 412 (464)
.+|.|+|+++.+|+.++|+.||++|+||..|++|++++|||+||+|||+++.+|. .|++.+...+.+|++++ |+++
T Consensus 312 -~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~-~eiv~~~~~~~~G~lv~~~d~~~ 389 (465)
T PLN02871 312 -TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAGGI-PDIIPPDQEGKTGFLYTPGDVDD 389 (465)
T ss_pred -CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCCc-HhhhhcCCCCCceEEeCCCCHHH
Confidence 4799999999999999999999999999999999999999999999999999988 67775422258899885 9999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHhh
Q 012436 413 YADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKA-AIRPILCH 461 (464)
Q Consensus 413 la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~ 461 (464)
++++|.++++ |++.++++++++++.+++|+|+.+++++.+ .|++++..
T Consensus 390 la~~i~~ll~-~~~~~~~~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 390 CVEKLETLLA-DPELRERMGAAAREEVEKWDWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred HHHHHHHHHh-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999998888999999999998 68887653
No 10
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=1.1e-40 Score=325.38 Aligned_cols=371 Identities=18% Similarity=0.129 Sum_probs=263.2
Q ss_pred CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccccCcceehhhhch
Q 012436 47 GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSF 126 (464)
Q Consensus 47 ~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (464)
.||+|+++.+++++|.+.|| +|+++++........ ......+++++++....+.... .........
T Consensus 19 ~GG~e~~v~~la~~L~~~G~--~V~v~~~~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~ 84 (405)
T TIGR03449 19 AGGMNVYILETATELARRGI--EVDIFTRATRPSQPP---------VVEVAPGVRVRNVVAGPYEGLD---KEDLPTQLC 84 (405)
T ss_pred CCCceehHHHHHHHHhhCCC--EEEEEecccCCCCCC---------ccccCCCcEEEEecCCCcccCC---HHHHHHHHH
Confidence 48999999999999999995 555555432111110 0111123345444322211100 000000000
Q ss_pred hhhHHHH-HHhh--hcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhh
Q 012436 127 GSVYLSW-EALC--KFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLS 201 (464)
Q Consensus 127 ~~~~~~~-~~l~--~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (464)
....... ..++ ..+||+||.+........ +++..++|+|++.|.... +... +.. ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~---~~~~-------~~~--------~~~ 146 (405)
T TIGR03449 85 AFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLAA---VKNA-------ALA--------DGD 146 (405)
T ss_pred HHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccchHH---HHHH-------hcc--------CCC
Confidence 1111122 2233 347999998764443322 455789999999993210 0000 000 000
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCC-------CCCCCcEEE
Q 012436 202 QCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE-------RSTEYPAII 273 (464)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~-------~~~~~~~i~ 273 (464)
.. ........++..++.+|.++++|+...+.+.+.++. ..++.+||||+|.+.+.+.... ..+++++|+
T Consensus 147 ~~---~~~~~~~~e~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~i~ 223 (405)
T TIGR03449 147 TP---EPEARRIGEQQLVDNADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLPLDTKVVA 223 (405)
T ss_pred CC---chHHHHHHHHHHHHhcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHHhcCCCCCCcEEE
Confidence 00 011122345667899999999999998888877665 5789999999998776532111 123568999
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHH
Q 012436 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLL 353 (464)
Q Consensus 274 ~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l 353 (464)
|+|++.+.||++.+++|++.+.+...+ .+++|+++|++... .....+++++.++++++.++|.|+|+++.+++.++|
T Consensus 224 ~~G~l~~~K~~~~li~a~~~l~~~~~~--~~~~l~ivG~~~~~-g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l 300 (405)
T TIGR03449 224 FVGRIQPLKAPDVLLRAVAELLDRDPD--RNLRVIVVGGPSGS-GLATPDALIELAAELGIADRVRFLPPRPPEELVHVY 300 (405)
T ss_pred EecCCCcccCHHHHHHHHHHHHhhCCC--cceEEEEEeCCCCC-cchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHH
Confidence 999999999999999999999776521 13999999964321 113347888999999999999999999999999999
Q ss_pred hcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHH
Q 012436 354 GGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEM 431 (464)
Q Consensus 354 ~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~ 431 (464)
+.||++++||..|++|++++|||++|+|||+++.++. .+++.+ +.+|++++ |+++++++|.++++ +++.++++
T Consensus 301 ~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~-~e~i~~---~~~g~~~~~~d~~~la~~i~~~l~-~~~~~~~~ 375 (405)
T TIGR03449 301 RAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGL-PVAVAD---GETGLLVDGHDPADWADALARLLD-DPRTRIRM 375 (405)
T ss_pred HhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCc-Hhhhcc---CCceEECCCCCHHHHHHHHHHHHh-CHHHHHHH
Confidence 9999999999999999999999999999999999988 688888 88999886 99999999999999 99999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 012436 432 AAAARRRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 432 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
++++++.+++|||+.+++++.++|.+++.
T Consensus 376 ~~~~~~~~~~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 376 GAAAVEHAAGFSWAATADGLLSSYRDALA 404 (405)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 99999888889999999999999998764
No 11
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=5.5e-40 Score=321.79 Aligned_cols=377 Identities=17% Similarity=0.136 Sum_probs=253.3
Q ss_pred CCcchhhHHHHHHhhhhCCCCceEEEcccCCCC--chhHHHHHHhhcCcccCCCceeeeeecccccccccCcceehhhhc
Q 012436 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAF--PDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQS 125 (464)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (464)
||+++++.+|+++|.+.||-++|.++|...... ...+... ......++++++++.... .+.........
T Consensus 26 GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~-----~~~~~~gv~v~r~~~~~~----~~~~~~~~~~~ 96 (439)
T TIGR02472 26 GGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQP-----IERIAPGARIVRLPFGPR----RYLRKELLWPY 96 (439)
T ss_pred CCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCC-----eeEeCCCcEEEEecCCCC----CCcChhhhhhh
Confidence 899999999999999999622556666432100 0010000 011123345555543211 00000000111
Q ss_pred -hhhhHHHHHHhhhc--CCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhh
Q 012436 126 -FGSVYLSWEALCKF--TPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWL 200 (464)
Q Consensus 126 -~~~~~~~~~~l~~~--~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (464)
......+.+.+++. +||+||++...+.... +++..++|+|++.|..... ....+. .. ....
T Consensus 97 ~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H~~~~~--~~~~~~-------~~-----~~~~ 162 (439)
T TIGR02472 97 LDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTGHSLGRE--KRRRLL-------AA-----GLKP 162 (439)
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEecccccch--hhhhcc-------cC-----CCCh
Confidence 11123344455543 7999998865443332 4557899999999942210 000000 00 0000
Q ss_pred hHHHHHHH-HHHHHHHHHHhhcCCEEEEcCHHHHH-HHHHHhCC-CCCeEEecCCCCCCCCccCCCC-------------
Q 012436 201 SQCKIVYY-TFFSWMYGLVGSCADLAMVNSSWTQS-HIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE------------- 264 (464)
Q Consensus 201 ~~~~~~~~-~~~~~~~~~~~~~ad~vi~~S~~~~~-~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~------------- 264 (464)
......+. ......++..++.+|.++++|+.... .+....+. ++++.+||||+|.+.|.+....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~ 242 (439)
T TIGR02472 163 QQIEKQYNISRRIEAEEETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPF 242 (439)
T ss_pred hhhhhhcchHHHHHHHHHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhh
Confidence 00011110 00112467788999999999976543 33333233 6789999999999877643211
Q ss_pred -CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEE-EEcCCCCCcc-----HHHHHHHHHHHHhcCCCCc
Q 012436 265 -RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQ-FVGSCRNKSD-----EERLQSLKDKSIELKVDGN 337 (464)
Q Consensus 265 -~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~-i~G~~~~~~~-----~~~~~~l~~~~~~~~l~~~ 337 (464)
..++.++++|+||+.+.||++.+++|++.+.... ++.+++ ++|++++.+. .++.+++.++++++++.++
T Consensus 243 ~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~----~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 318 (439)
T TIGR02472 243 LKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQ----EMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGK 318 (439)
T ss_pred ccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhh----hhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCce
Confidence 1134578999999999999999999998643221 123333 5687764321 1244567778889999999
Q ss_pred EEEccCCChhHHHHHHhcC----cEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHH
Q 012436 338 VEFYKNLLYRDLVKLLGGA----VVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAE 411 (464)
Q Consensus 338 v~~~g~~~~~~~~~~l~~a----d~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~ 411 (464)
|.|.|+++.+++.++|+.| |++++||..|+||++++||||||+|||+|+.+|. .|++.+ +.+|++++ |++
T Consensus 319 V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~-~eiv~~---~~~G~lv~~~d~~ 394 (439)
T TIGR02472 319 VAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGP-RDIIAN---CRNGLLVDVLDLE 394 (439)
T ss_pred EEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCc-HHHhcC---CCcEEEeCCCCHH
Confidence 9999999999999999987 9999999999999999999999999999999998 789988 88999986 999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHH
Q 012436 412 EYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 412 ~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~ 456 (464)
+++++|.++++ |++.++++++++++.+ ++|||+.+++++.++++
T Consensus 395 ~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 395 AIASALEDALS-DSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred HHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999 9999999999999998 89999999999998763
No 12
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.9e-40 Score=319.00 Aligned_cols=355 Identities=21% Similarity=0.217 Sum_probs=263.5
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||++++. +..||+++++.+++++|.+.||+++|+ +.... ...... ..++ .+.......+
T Consensus 1 mki~~~~~--p~~gG~~~~~~~la~~L~~~G~~v~v~--~~~~~---~~~~~~---~~~~------~~~~~~~~~~---- 60 (371)
T cd04962 1 MKIGIVCY--PTYGGSGVVATELGKALARRGHEVHFI--TSSRP---FRLDEY---SPNI------FFHEVEVPQY---- 60 (371)
T ss_pred CceeEEEE--eCCCCccchHHHHHHHHHhcCCceEEE--ecCCC---cchhhh---ccCe------EEEEeccccc----
Confidence 79999873 345899999999999999999665544 43221 000000 0011 1111111100
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhh-c---cCceEEEEeeCCcchhhhhhccccccccc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LAR-I---FGCRVICYTHYPTISLDMISRVREGSSMY 188 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~-~---~~~p~v~~~h~p~~~~~~~~~~~~~~~~~ 188 (464)
+.+............+.+.+++.+||+||.+...+.... +++ . .++|+++++|..... ...
T Consensus 61 --~~~~~~~~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-----~~~------ 127 (371)
T cd04962 61 --PLFQYPPYDLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDIT-----LVG------ 127 (371)
T ss_pred --chhhcchhHHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccc-----ccc------
Confidence 000000111223445666788899999997755433222 222 1 389999999943210 000
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCC----
Q 012436 189 NNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE---- 264 (464)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~---- 264 (464)
. ...+.++.+..++.+|.++++|+..++.+.+.++...++.++|||+|...+......
T Consensus 128 ----------~--------~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~~~~~~ 189 (371)
T cd04962 128 ----------Q--------DPSFQPATRFSIEKSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALKR 189 (371)
T ss_pred ----------c--------cccchHHHHHHHhhCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCchHHHHH
Confidence 0 001112346667899999999999999998877657789999999988765432211
Q ss_pred ---CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc
Q 012436 265 ---RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY 341 (464)
Q Consensus 265 ---~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~ 341 (464)
..++.++++++|++.+.||++.+++++..+.++. +++++++|.+++. +.+++.++++++.++|.+.
T Consensus 190 ~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~~-----~~~l~i~G~g~~~------~~~~~~~~~~~~~~~v~~~ 258 (371)
T cd04962 190 RLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKEV-----PARLLLVGDGPER------SPAERLARELGLQDDVLFL 258 (371)
T ss_pred hcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhcC-----CceEEEEcCCcCH------HHHHHHHHHcCCCceEEEe
Confidence 1245678999999999999999999999987653 7899999998653 6788888889988899999
Q ss_pred cCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHH
Q 012436 342 KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVK 419 (464)
Q Consensus 342 g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~ 419 (464)
|+. +++.++|+.||++++||..|++|++++|||++|+|||+|+.++. .|++.+ +.+|++++ |++++++++.+
T Consensus 259 g~~--~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~-~e~i~~---~~~G~~~~~~~~~~l~~~i~~ 332 (371)
T cd04962 259 GKQ--DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGI-PEVVKH---GETGFLVDVGDVEAMAEYALS 332 (371)
T ss_pred cCc--ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCc-hhhhcC---CCceEEcCCCCHHHHHHHHHH
Confidence 987 68999999999999999999999999999999999999999988 788888 88999886 99999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHH
Q 012436 420 IISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 420 l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~ 458 (464)
+++ |++.++++++++++.+ ++|||+.+++++.++|+++
T Consensus 333 l~~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 333 LLE-DDELWQEFSRAARNRAAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred HHh-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999 9999999999999997 8999999999999999863
No 13
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1e-39 Score=332.26 Aligned_cols=413 Identities=14% Similarity=0.108 Sum_probs=281.6
Q ss_pred ccccccccceEEEecCCCC------------CCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCc--hhHHHH---HH
Q 012436 27 HNARRNRTTSVAFFHPNTN------------DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFP--DSLLAR---AV 89 (464)
Q Consensus 27 ~~~~~~~~mkI~~~~~~~~------------~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~~~~~---~~ 89 (464)
.+..+.++|.|++++.... ..||...++.+||++|.+.|.-++|.++|...+.+. ..+.+. ..
T Consensus 162 ~~~~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~ 241 (1050)
T TIGR02468 162 SDQQKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLT 241 (1050)
T ss_pred hhhcccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccc
Confidence 4556678899998863221 128999999999999999863236777777542110 000000 00
Q ss_pred ----hhc--CcccCCCceeeeeecccc---cccccCcceehhhhchhhhHHHHHH----h-h------hcCCcEEEeccc
Q 012436 90 ----DRF--GVELLHPPKVVHLYRRKW---IEESTYPRFTMIGQSFGSVYLSWEA----L-C------KFTPLYYFDTSG 149 (464)
Q Consensus 90 ----~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----l-~------~~~~Dvv~~~~~ 149 (464)
+.+ ......++.+++++.... +.. -..|..+..+...+...... + . ...||+||.|..
T Consensus 242 ~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~K--e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw 319 (1050)
T TIGR02468 242 PRSSENDGDEMGESSGAYIIRIPFGPRDKYIPK--EELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYA 319 (1050)
T ss_pred ccccccccccccCCCCeEEEEeccCCCCCCcCH--HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcc
Confidence 000 111223446666665322 111 11121222222222111111 1 1 114999999876
Q ss_pred ccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEE
Q 012436 150 YAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMV 227 (464)
Q Consensus 150 ~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~ 227 (464)
.+.... +++..++|+|+|.|.-.. ......+.... .......... .. ......++.++..||.||+
T Consensus 320 ~sG~aa~~L~~~lgVP~V~T~HSLgr-~K~~~ll~~g~--------~~~~~~~~~y-~~--~~Ri~~Ee~~l~~Ad~VIa 387 (1050)
T TIGR02468 320 DAGDSAALLSGALNVPMVLTGHSLGR-DKLEQLLKQGR--------MSKEEINSTY-KI--MRRIEAEELSLDASEIVIT 387 (1050)
T ss_pred hHHHHHHHHHHhhCCCEEEECccchh-hhhhhhccccc--------cccccccccc-ch--HHHHHHHHHHHHhcCEEEE
Confidence 665544 666899999999995210 00000000000 0000000000 00 1111357888999999999
Q ss_pred cCHHHHHHHHHHhCC-----------------------CCCeEEecCCCCCCCCccCCCC--------------------
Q 012436 228 NSSWTQSHIEKLWGI-----------------------PDRIKRVYPPCDTSGLQVLPLE-------------------- 264 (464)
Q Consensus 228 ~S~~~~~~~~~~~~~-----------------------~~~i~~i~~~~d~~~~~~~~~~-------------------- 264 (464)
.|+..++.....|+. ..++.|||||+|++.|.+....
T Consensus 388 sT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1050)
T TIGR02468 388 STRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIW 467 (1050)
T ss_pred eCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhh
Confidence 999999876666531 2388999999999888743110
Q ss_pred -------CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCc-----cHHHHHHHHHHHHhc
Q 012436 265 -------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKS-----DEERLQSLKDKSIEL 332 (464)
Q Consensus 265 -------~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~-----~~~~~~~l~~~~~~~ 332 (464)
..++++.|+++||+.+.||++.+|+|+..+...... +++. +|+|++++.+ ...+..+++++++++
T Consensus 468 ~~l~r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~--~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 468 SEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLREL--ANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred HHHHhhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccC--CCEE-EEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 024557899999999999999999999998754311 3555 4668765321 123457789999999
Q ss_pred CCCCcEEEccCCChhHHHHHHhcC----cEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC
Q 012436 333 KVDGNVEFYKNLLYRDLVKLLGGA----VVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ 408 (464)
Q Consensus 333 ~l~~~v~~~g~~~~~~~~~~l~~a----d~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~ 408 (464)
++.++|.|.|+++.+++.++|+.| |+|++||..|+||++++||||||+|||+|+.+|. .|++.+ +.+|++++
T Consensus 545 gL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~-~EII~~---g~nGlLVd 620 (1050)
T TIGR02468 545 DLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGP-VDIHRV---LDNGLLVD 620 (1050)
T ss_pred CCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCc-HHHhcc---CCcEEEEC
Confidence 999999999999999999999988 6999999999999999999999999999999998 799988 89999986
Q ss_pred --CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 012436 409 --NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCH 461 (464)
Q Consensus 409 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 461 (464)
|+++++++|.++++ |++.++++++++++.+++|+|+.+++++.+.+..+...
T Consensus 621 P~D~eaLA~AL~~LL~-Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~~~ 674 (1050)
T TIGR02468 621 PHDQQAIADALLKLVA-DKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASCRPR 674 (1050)
T ss_pred CCCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999 99999999999999998899999999999999887643
No 14
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=6.3e-39 Score=321.49 Aligned_cols=420 Identities=11% Similarity=0.035 Sum_probs=281.8
Q ss_pred HHHHhhhcccccccccceEEEecCCCCCC---CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHh-----
Q 012436 19 ILILASHVHNARRNRTTSVAFFHPNTNDG---GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD----- 90 (464)
Q Consensus 19 ~~~~~~~~~~~~~~~~mkI~~~~~~~~~~---GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~----- 90 (464)
+++=++++.+.+++.+|||+|+..-+.+. ||..-++..|.++|++.| ++|.++++.++.-..........
T Consensus 466 ~~~~~~~~~~~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~G--hdV~VIlP~Y~~i~~~~~~~~~~~~~~~ 543 (977)
T PLN02939 466 AVENFLKLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKG--HLVEIVLPKYDCMQYDQIRNLKVLDVVV 543 (977)
T ss_pred HHHHHHHhccCCCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcC--CeEEEEeCCCcccChhhhhcccccceEE
Confidence 34446688888889999999998766554 899999999999999999 55656666553221110000000
Q ss_pred --hcC-----c----ccCCCceeeeeecc----cccccccCcceehhhhchhhhHHHHHHhhh--cCCcEEEeccccccc
Q 012436 91 --RFG-----V----ELLHPPKVVHLYRR----KWIEESTYPRFTMIGQSFGSVYLSWEALCK--FTPLYYFDTSGYAFT 153 (464)
Q Consensus 91 --~~~-----~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~Dvv~~~~~~~~~ 153 (464)
.++ . ....++.++.+... .+.....|....-..++..+...+.+.+.. .+|||||+|.+..+.
T Consensus 544 ~~~~~g~~~~~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaL 623 (977)
T PLN02939 544 ESYFDGNLFKNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAF 623 (977)
T ss_pred EEeecCceeEEEEEEEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHH
Confidence 000 0 00112344444311 111111221111112222233344455544 589999999888777
Q ss_pred c-hhhh-------ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHH---HHHHHHHHHHHHhhcC
Q 012436 154 Y-PLAR-------IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIV---YYTFFSWMYGLVGSCA 222 (464)
Q Consensus 154 ~-~~~~-------~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a 222 (464)
+ ++.+ ..++|+|+|+|+-........... .+.+ ... ......... +...+ .+.+..+-+|
T Consensus 624 V~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l----~~lG---L~~-~~l~~~d~le~~~~~~i-N~LK~GIv~A 694 (977)
T PLN02939 624 VAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDL----ASCG---LDV-HQLDRPDRMQDNAHGRI-NVVKGAIVYS 694 (977)
T ss_pred HHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHH----HHcC---CCH-HHccChhhhhhccCCch-HHHHHHHHhC
Confidence 5 3222 356899999994321110000000 0000 000 000000000 00111 1234445679
Q ss_pred CEEEEcCHHHHHHHHHHhC--------C-CCCeEEecCCCCCCCCccCCCC--------------------------CC-
Q 012436 223 DLAMVNSSWTQSHIEKLWG--------I-PDRIKRVYPPCDTSGLQVLPLE--------------------------RS- 266 (464)
Q Consensus 223 d~vi~~S~~~~~~~~~~~~--------~-~~~i~~i~~~~d~~~~~~~~~~--------------------------~~- 266 (464)
|.|+++|+..++.+...+| . ..++.+|+||+|.+.|.+.... .+
T Consensus 695 D~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~ 774 (977)
T PLN02939 695 NIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSS 774 (977)
T ss_pred CeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCc
Confidence 9999999999999876432 1 5788999999999887643210 00
Q ss_pred --CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 012436 267 --TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (464)
Q Consensus 267 --~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 344 (464)
++.++|+++||+.+.||++.+++|+..+.. ++++|+|+|+|+.. .+.++++++++++++.++|.|.|..
T Consensus 775 ~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~------~dvqLVIvGdGp~~---~~e~eL~~La~~l~l~drV~FlG~~ 845 (977)
T PLN02939 775 ADASQPLVGCITRLVPQKGVHLIRHAIYKTAE------LGGQFVLLGSSPVP---HIQREFEGIADQFQSNNNIRLILKY 845 (977)
T ss_pred ccccceEEEEeecCCcccChHHHHHHHHHHhh------cCCEEEEEeCCCcH---HHHHHHHHHHHHcCCCCeEEEEecc
Confidence 235789999999999999999999988764 27899999999743 4457888899999988899999999
Q ss_pred ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccC------CccceeecC--CHHHHHHH
Q 012436 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEED------GQQTGFLAQ--NAEEYADA 416 (464)
Q Consensus 345 ~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~------~~~~g~~~~--~~~~la~~ 416 (464)
+......+|+.||++++||.+|+||++++|||+||+|+|++++||. .+.|.+.. .+.+|++++ |+++++++
T Consensus 846 de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL-~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~A 924 (977)
T PLN02939 846 DEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGL-NDSVFDFDDETIPVELRNGFTFLTPDEQGLNSA 924 (977)
T ss_pred CHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCC-cceeecCCccccccCCCceEEecCCCHHHHHHH
Confidence 8888889999999999999999999999999999999999999998 67665311 146899886 99999999
Q ss_pred HHHHHc---CCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 012436 417 IVKIIS---MPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCH 461 (464)
Q Consensus 417 i~~l~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 461 (464)
|.+++. .|++.++++++++.. +.|||+.++++|.++|++++..
T Consensus 925 L~rAL~~~~~dpe~~~~L~~~am~--~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 925 LERAFNYYKRKPEVWKQLVQKDMN--IDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHh
Confidence 988763 178888888876543 7899999999999999998754
No 15
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1e-38 Score=319.78 Aligned_cols=374 Identities=16% Similarity=0.083 Sum_probs=265.8
Q ss_pred cccc-eEEEecCCCCCCCCcchhhHHHHHHhhhhCC------------CCceEEEcccCCCCchhHHHHHHhhcCcccCC
Q 012436 32 NRTT-SVAFFHPNTNDGGGGERVLWCAVKAIQEESP------------DLDCIVYTGDHDAFPDSLLARAVDRFGVELLH 98 (464)
Q Consensus 32 ~~~m-kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (464)
.++. ||+++.++...| |+|+++.+|+.+|.+.+. ++.|++++.........+..... ..|+
T Consensus 278 ~~~~~rIl~vi~sl~~G-GAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~-~~Gv---- 351 (694)
T PRK15179 278 ESFVGPVLMINGSLGAG-GAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLA-DAGI---- 351 (694)
T ss_pred CCCcceEEEEeCCCCCC-cHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHH-hCCC----
Confidence 3556 999999998877 999999999999999854 24566653211101122222221 2243
Q ss_pred Cceeeeeecccccccc----cCcceeh-----hhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEE
Q 012436 99 PPKVVHLYRRKWIEES----TYPRFTM-----IGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICY 167 (464)
Q Consensus 99 ~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~ 167 (464)
++..+......... ....+.. ........+.+.+++++.+|||||++...+..+. .++..++|+|++
T Consensus 352 --~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gvPvIv~ 429 (694)
T PRK15179 352 --PVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGVPRIVL 429 (694)
T ss_pred --eEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCCCEEEE
Confidence 33333322111000 0000000 0112334567778899999999998776654433 445678998774
Q ss_pred e-eCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCC
Q 012436 168 T-HYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDR 245 (464)
Q Consensus 168 ~-h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~ 245 (464)
. |.-.. . .........+...+.. .....++.++++|+..++.+.+.++. .++
T Consensus 430 t~h~~~~---~--------------------~~~~~~~~~~~~l~~~---l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~k 483 (694)
T PRK15179 430 SVRTMPP---V--------------------DRPDRYRVEYDIIYSE---LLKMRGVALSSNSQFAAHRYADWLGVDERR 483 (694)
T ss_pred EeCCCcc---c--------------------cchhHHHHHHHHHHHH---HHhcCCeEEEeCcHHHHHHHHHHcCCChhH
Confidence 4 41100 0 0000111111111111 11134567788888888888776666 578
Q ss_pred eEEecCCCCCCCCccCCC----------CCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCC
Q 012436 246 IKRVYPPCDTSGLQVLPL----------ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN 315 (464)
Q Consensus 246 i~~i~~~~d~~~~~~~~~----------~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~ 315 (464)
+.+||||+|.+.+.+.+. ....+.++|+++||+.+.||++.+++|+..+.++. |+++|+|+|+|+.
T Consensus 484 I~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~----p~~~LvIvG~G~~ 559 (694)
T PRK15179 484 IPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASH----PKVRFIMVGGGPL 559 (694)
T ss_pred EEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHC----cCeEEEEEccCcc
Confidence 999999999876642111 11234578999999999999999999999988766 6899999999864
Q ss_pred CccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCcccee
Q 012436 316 KSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIV 395 (464)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v 395 (464)
. ++++++++++++.++|.|.|+. +++..+|+.+|++++||.+|+||++++|||+||+|||+|+.+|. .|++
T Consensus 560 ~------~~L~~l~~~lgL~~~V~flG~~--~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~-~EiV 630 (694)
T PRK15179 560 L------ESVREFAQRLGMGERILFTGLS--RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGA-GEAV 630 (694)
T ss_pred h------HHHHHHHHHcCCCCcEEEcCCc--chHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCCh-HHHc
Confidence 3 7899999999999999999998 68999999999999999999999999999999999999999988 7899
Q ss_pred cccCCccceeecC--C--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHH
Q 012436 396 LEEDGQQTGFLAQ--N--AEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 396 ~~~~~~~~g~~~~--~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~ 456 (464)
.+ +.+|++++ | ++++++++.+++. +......+++++++.+ ++|||+.+++++.++|+
T Consensus 631 ~d---g~~GlLv~~~d~~~~~La~aL~~ll~-~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 631 QE---GVTGLTLPADTVTAPDVAEALARIHD-MCAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred cC---CCCEEEeCCCCCChHHHHHHHHHHHh-ChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 98 89999986 4 5689999998887 6666677888999998 89999999999999985
No 16
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.9e-38 Score=308.16 Aligned_cols=369 Identities=20% Similarity=0.207 Sum_probs=251.0
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||+|+|++++.. ..+|+++|.+.|| +|.+++......... ++ +++.+..........
T Consensus 1 ~il~~~~~~p~~------~~~la~~L~~~G~--~v~~~~~~~~~~~~~---------~v------~~~~~~~~~~~~~~~ 57 (396)
T cd03818 1 RILFVHQNFPGQ------FRHLAPALAAQGH--EVVFLTEPNAAPPPG---------GV------RVVRYRPPRGPTSGT 57 (396)
T ss_pred CEEEECCCCchh------HHHHHHHHHHCCC--EEEEEecCCCCCCCC---------Ce------eEEEecCCCCCCCCC
Confidence 699999988722 3568999999995 445555433111110 12 333333211111111
Q ss_pred Ccceehhhhch---hhhHHHHHH--hhhcCCcEEEecccccccchhhh-ccCceEEEEeeCCcchhhhhhcccccccccC
Q 012436 116 YPRFTMIGQSF---GSVYLSWEA--LCKFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (464)
Q Consensus 116 ~~~~~~~~~~~---~~~~~~~~~--l~~~~~Dvv~~~~~~~~~~~~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~ 189 (464)
++......... ..+...... .+.++||+||++.++...+.+.+ ..++|+|.++|+.... ......+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~~~~~~-------~~~~~~~~ 130 (396)
T cd03818 58 HPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYFEFYYRA-------EGADVGFD 130 (396)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEEeeeecC-------CCCCCCCC
Confidence 11111111111 111122222 24468999999988776655555 4679999988742210 00000011
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCC----
Q 012436 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLER---- 265 (464)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~---- 265 (464)
... ..........+.........++.+|.+|++|++.++.+.+.+ ..++.+||||+|.+.+.+.+...
T Consensus 131 ~~~------~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~--~~ki~vI~ngvd~~~f~~~~~~~~~~~ 202 (396)
T cd03818 131 PEF------PPSLDDALRLRNRNALILLALAQADAGVSPTRWQRSTFPAEL--RSRISVIHDGIDTDRLRPDPQARLRLP 202 (396)
T ss_pred CCC------CCchhHHHHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcHhh--ccceEEeCCCccccccCCCchhhhccc
Confidence 000 000000011111112345678999999999999999988766 57899999999998776432211
Q ss_pred -----CCCCcEEEEEec-cCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCC-----C-ccHHHHHHHHHHH-Hhc
Q 012436 266 -----STEYPAIISVAQ-FRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN-----K-SDEERLQSLKDKS-IEL 332 (464)
Q Consensus 266 -----~~~~~~i~~~G~-~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~-----~-~~~~~~~~l~~~~-~~~ 332 (464)
..+.++++|+|| +.+.||++.+++|+..+.+.. |+++++|+|++.. . ..+.+.+.+.+.. .++
T Consensus 203 ~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~----~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 278 (396)
T cd03818 203 NGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRAR----PDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRL 278 (396)
T ss_pred ccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHC----CCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhccc
Confidence 135578999997 999999999999999998775 6999999997421 0 0111222322222 222
Q ss_pred CCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CH
Q 012436 333 KVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NA 410 (464)
Q Consensus 333 ~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~ 410 (464)
+ .++|+|+|++|++++.++|+.||++++||..|++|++++||||||+|||+|+.++. .|++.+ +.+|++++ |+
T Consensus 279 ~-~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~-~e~i~~---~~~G~lv~~~d~ 353 (396)
T cd03818 279 D-LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPV-REVITD---GENGLLVDFFDP 353 (396)
T ss_pred C-cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCc-hhhccc---CCceEEcCCCCH
Confidence 2 46899999999999999999999999999999999999999999999999999988 789988 89999986 99
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHH
Q 012436 411 EEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFK 452 (464)
Q Consensus 411 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~ 452 (464)
++++++|.++++ |++.++++++++++.+ ++|||+.++++|.
T Consensus 354 ~~la~~i~~ll~-~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 354 DALAAAVIELLD-DPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 999999999999 9999999999999999 7799999999886
No 17
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.4e-38 Score=309.03 Aligned_cols=363 Identities=20% Similarity=0.232 Sum_probs=262.8
Q ss_pred ceEEEecCCCCC--CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccc
Q 012436 35 TSVAFFHPNTND--GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIE 112 (464)
Q Consensus 35 mkI~~~~~~~~~--~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (464)
|||+++++++++ .||+++++.+++++|.+. ++++|+++.... . ...++ ++.+... +..
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~------~-----~~~~~------~~~~~~~--~~~ 60 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR------F-----DSEGL------TVKGYRP--WSE 60 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch------h-----cCCCe------EEEEecC--hhh
Confidence 899999887765 389999999999999987 668877654321 0 00121 2322211 110
Q ss_pred cccCcceehhhhchhhhH-HHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccC
Q 012436 113 ESTYPRFTMIGQSFGSVY-LSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (464)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~ 189 (464)
. .. ....+.... .........++|+||.+..+..... .++..++|+|++.|...... .+ .
T Consensus 61 ~---~~---~~~~~~~~~~~~~~~~~~~~~divh~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~-----~~------~ 123 (388)
T TIGR02149 61 L---KE---ANKALGTFSVDLAMANDPVDADVVHSHTWYTFLAGHLAKKLYDKPLVVTAHSLEPLR-----PW------K 123 (388)
T ss_pred c---cc---hhhhhhhhhHHHHHhhCCCCCCeEeecchhhhhHHHHHHHhcCCCEEEEeecccccc-----cc------c
Confidence 0 00 001111111 1111122347999998776554333 34467999999999421000 00 0
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHh-CC-CCCeEEecCCCCCCCCccCCC----
Q 012436 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLW-GI-PDRIKRVYPPCDTSGLQVLPL---- 263 (464)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~-~~-~~~i~~i~~~~d~~~~~~~~~---- 263 (464)
. ..... .+....++++..++.+|.++++|+..++.+.+.+ +. ..++.++|||+|.+.+.+...
T Consensus 124 ~------~~~~~-----~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~~~~ 192 (388)
T TIGR02149 124 E------EQLGG-----GYKLSSWAEKTAIEAADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGNVVL 192 (388)
T ss_pred c------ccccc-----chhHHHHHHHHHHhhCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCchHHHH
Confidence 0 00000 0123445678888999999999999999998876 33 578899999999876653211
Q ss_pred ---CCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCC-CCcEE
Q 012436 264 ---ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV-DGNVE 339 (464)
Q Consensus 264 ---~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l-~~~v~ 339 (464)
...++.++++|+|++.+.||++.+++|++.+.. +++++++|+++.. .++.+++++.+++++. .+++.
T Consensus 193 ~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~-------~~~l~i~g~g~~~--~~~~~~~~~~~~~~~~~~~~v~ 263 (388)
T TIGR02149 193 DRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIPK-------DVQVVLCAGAPDT--PEVAEEVRQAVALLDRNRTGII 263 (388)
T ss_pred HHhCCCCCceEEEEEcccccccCHHHHHHHHHHHhh-------cCcEEEEeCCCCc--HHHHHHHHHHHHHhccccCceE
Confidence 112455789999999999999999999998743 7789998877643 2345677777777765 23566
Q ss_pred Ec-cCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CH------
Q 012436 340 FY-KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NA------ 410 (464)
Q Consensus 340 ~~-g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~------ 410 (464)
+. |.++.+++.++|+.||++++||..|++|++++|||++|+|||+++.++. .|++.+ +.+|++++ |+
T Consensus 264 ~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~-~e~i~~---~~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 264 WINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGI-PEVVVD---GETGFLVPPDNSDADGFQ 339 (388)
T ss_pred EecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCH-HHHhhC---CCceEEcCCCCCcccchH
Confidence 64 6789999999999999999999999999999999999999999999988 788888 88999986 66
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHH
Q 012436 411 EEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPIL 459 (464)
Q Consensus 411 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~ 459 (464)
++++++|.++++ |++.++++++++++.+ ++|||+.+++++.++|++++
T Consensus 340 ~~l~~~i~~l~~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 340 AELAKAINILLA-DPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 899999999999 9999999999999998 89999999999999998763
No 18
>PLN02316 synthase/transferase
Probab=100.00 E-value=3.4e-38 Score=322.13 Aligned_cols=380 Identities=15% Similarity=0.092 Sum_probs=264.9
Q ss_pred cccccceEEEecCCCCCC---CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHh--hcC--c-------c
Q 012436 30 RRNRTTSVAFFHPNTNDG---GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD--RFG--V-------E 95 (464)
Q Consensus 30 ~~~~~mkI~~~~~~~~~~---GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~--~~~--~-------~ 95 (464)
.+..+|||++++.-+.+. ||...++..|+++|++.| ++|.++++.++............ .+. . .
T Consensus 583 ~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~G--h~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~ 660 (1036)
T PLN02316 583 AKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLN--HNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFG 660 (1036)
T ss_pred CCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcC--CEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEE
Confidence 344669999998655552 899999999999999999 56666666553211100000000 000 0 0
Q ss_pred cCCCceeeeeeccc-cc-ccccCcceehhhhchhhhHHHHHHhhh--cCCcEEEecccccccch-hhh-------ccCce
Q 012436 96 LLHPPKVVHLYRRK-WI-EESTYPRFTMIGQSFGSVYLSWEALCK--FTPLYYFDTSGYAFTYP-LAR-------IFGCR 163 (464)
Q Consensus 96 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~Dvv~~~~~~~~~~~-~~~-------~~~~p 163 (464)
..+++.++.+.... +. ....+....-..++..+...+...+.+ .+|||||+|...+...+ +.+ ..++|
T Consensus 661 ~~~GV~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~p 740 (1036)
T PLN02316 661 KVEGLSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKAR 740 (1036)
T ss_pred EECCcEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCCC
Confidence 11123444443211 11 111111111111122222233333433 58999999987666554 222 24689
Q ss_pred EEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-
Q 012436 164 VICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI- 242 (464)
Q Consensus 164 ~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~- 242 (464)
+|+++|+.. |. . ...+..+..+|.|+++|+..++.+...+..
T Consensus 741 ~V~TiHnl~---------------~~-----------~-----------n~lk~~l~~AD~ViTVS~tya~EI~~~~~l~ 783 (1036)
T PLN02316 741 VVFTIHNLE---------------FG-----------A-----------NHIGKAMAYADKATTVSPTYSREVSGNSAIA 783 (1036)
T ss_pred EEEEeCCcc---------------cc-----------h-----------hHHHHHHHHCCEEEeCCHHHHHHHHhccCcc
Confidence 999999432 00 0 011345689999999999999998775433
Q ss_pred --CCCeEEecCCCCCCCCccCCCC---------------------------C-CCCCcEEEEEeccCCCCChHHHHHHHH
Q 012436 243 --PDRIKRVYPPCDTSGLQVLPLE---------------------------R-STEYPAIISVAQFRPEKAHPLQLEAFS 292 (464)
Q Consensus 243 --~~~i~~i~~~~d~~~~~~~~~~---------------------------~-~~~~~~i~~~G~~~~~K~~~~ll~a~~ 292 (464)
..++.+|+||+|.+.|.+.... . ..+.++++++||+.+.||++.+++|+.
T Consensus 784 ~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~ 863 (1036)
T PLN02316 784 PHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIW 863 (1036)
T ss_pred cccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHH
Confidence 4789999999999876532100 0 124578999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCC--CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCCh
Q 012436 293 VALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV--DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGI 370 (464)
Q Consensus 293 ~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~ 370 (464)
.+.+. +++|+|+|+|++. .+.+.++++++++++ +++|.|.|..+......+|+.||++++||.+|+||+
T Consensus 864 ~ll~~------~~qlVIvG~Gpd~---~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GL 934 (1036)
T PLN02316 864 RTLER------NGQVVLLGSAPDP---RIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGL 934 (1036)
T ss_pred HHhhc------CcEEEEEeCCCCH---HHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccH
Confidence 88653 7899999999753 455788889998865 578999888755555689999999999999999999
Q ss_pred HHHHHHHhCCcEEEeCCCCCccceecccC----------CccceeecC--CHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 012436 371 SVVEYMAAGAIPIAHNSAGPKMDIVLEED----------GQQTGFLAQ--NAEEYADAIVKIISMP-ETERLEMAAAARR 437 (464)
Q Consensus 371 ~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~----------~~~~g~~~~--~~~~la~~i~~l~~~~-~~~~~~~~~~~~~ 437 (464)
+.+|||+||+|+|++++||. .|.|.+.. .+.+|++++ |+++++++|.+++. + ++....+++.+++
T Consensus 935 vqLEAMa~GtppVvs~vGGL-~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~-~~~~~~~~~~~~~r~ 1012 (1036)
T PLN02316 935 TQLTAMRYGSIPVVRKTGGL-FDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAIS-AWYDGRDWFNSLCKR 1012 (1036)
T ss_pred HHHHHHHcCCCeEEEcCCCc-HhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHh-hhhhhHHHHHHHHHH
Confidence 99999999999999999999 67776510 025899997 99999999999998 6 3556667888888
Q ss_pred HH-HccCHHHHHHHHHHHHHHHH
Q 012436 438 RA-ARFSEQRFYEDFKAAIRPIL 459 (464)
Q Consensus 438 ~~-~~~s~~~~~~~~~~~~~~~~ 459 (464)
.+ ++|||+..+++|.++|+++.
T Consensus 1013 ~m~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 1013 VMEQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHh
Confidence 87 88999999999999999875
No 19
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=3.5e-38 Score=315.14 Aligned_cols=391 Identities=15% Similarity=0.164 Sum_probs=261.3
Q ss_pred ceEEEecCCC--------C--CCCCcchhhHHHHHHh--------hhhCCCC--ceEEEcccCCCC-chhHHHHHHhhcC
Q 012436 35 TSVAFFHPNT--------N--DGGGGERVLWCAVKAI--------QEESPDL--DCIVYTGDHDAF-PDSLLARAVDRFG 93 (464)
Q Consensus 35 mkI~~~~~~~--------~--~~GG~~~~~~~l~~~L--------~~~g~~~--~v~~~~~~~~~~-~~~~~~~~~~~~~ 93 (464)
|||++++... + ..||...++.+++++| ++.|+++ +|.++|...... ...+.+... .
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e---~ 332 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLE---K 332 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccc---c
Confidence 8999886544 1 1289999999999985 6889754 577888754211 111111111 1
Q ss_pred cccCCCceeeeeecccccc---cccCcceehhhhch-hhhHHHHHHhh---hcCCcEEEecccccccch--hhhccCceE
Q 012436 94 VELLHPPKVVHLYRRKWIE---ESTYPRFTMIGQSF-GSVYLSWEALC---KFTPLYYFDTSGYAFTYP--LARIFGCRV 164 (464)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~---~~~~Dvv~~~~~~~~~~~--~~~~~~~p~ 164 (464)
+...+++.+.+++.+.... ....++... +..+ .+...+.+.+. ..+||+||++...++... +++..++|.
T Consensus 333 ~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l-~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~ 411 (784)
T TIGR02470 333 VYGTEHAWILRVPFRTENGIILRNWISRFEI-WPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQ 411 (784)
T ss_pred ccCCCceEEEEecCCCCcccccccccCHHHH-HHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCE
Confidence 1112334566656543110 000111111 1111 11122222222 247999998887665544 677899999
Q ss_pred EEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHH-HHHHHHhhcCCEEEEcCHHHHH----HHHHH
Q 012436 165 ICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFS-WMYGLVGSCADLAMVNSSWTQS----HIEKL 239 (464)
Q Consensus 165 v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ad~vi~~S~~~~~----~~~~~ 239 (464)
+.+.|..... .+.. . +..+ ......+....+ ..+..++..||.||+.|..... .+.++
T Consensus 412 v~t~HsL~~~----K~~~--------~----g~~~-~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY 474 (784)
T TIGR02470 412 CTIAHALEKT----KYPD--------S----DIYW-QEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQY 474 (784)
T ss_pred EEECCcchhh----cccc--------c----cccc-ccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhh
Confidence 9999943210 0000 0 0000 000001110000 1245778999999999975533 22111
Q ss_pred -----------h----CC---CCCeEEecCCCCCCCCccCCCC----------------------------CCCCCcEEE
Q 012436 240 -----------W----GI---PDRIKRVYPPCDTSGLQVLPLE----------------------------RSTEYPAII 273 (464)
Q Consensus 240 -----------~----~~---~~~i~~i~~~~d~~~~~~~~~~----------------------------~~~~~~~i~ 273 (464)
+ |+ ..|+.++|||+|.+.|.+.... ..++++.|+
T Consensus 475 ~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl 554 (784)
T TIGR02470 475 ESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIF 554 (784)
T ss_pred hhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEE
Confidence 1 11 4688999999998877543211 023567899
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC------ccHHHHHHHHHHHHhcCCCCcEEEccCC-Ch
Q 012436 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK------SDEERLQSLKDKSIELKVDGNVEFYKNL-LY 346 (464)
Q Consensus 274 ~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~------~~~~~~~~l~~~~~~~~l~~~v~~~g~~-~~ 346 (464)
++||+.+.||++.+++|+.++.... ++++|+|+|++... +.....+++.++++++++.++|.|+|.. +.
T Consensus 555 ~VGRL~~~KGid~LIeA~~~l~~l~----~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~ 630 (784)
T TIGR02470 555 SMARLDRVKNLTGLVECYGRSPKLR----ELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNR 630 (784)
T ss_pred EEeCCCccCCHHHHHHHHHHhHhhC----CCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCc
Confidence 9999999999999999998875433 37899999987531 1223567888999999999999999975 55
Q ss_pred hHHHHHHh----cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHH
Q 012436 347 RDLVKLLG----GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKI 420 (464)
Q Consensus 347 ~~~~~~l~----~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l 420 (464)
.+..++|+ .+|++++||++|+||++++|||+||+|||+|+.||. .|++.+ +.+|++++ |+++++++|.++
T Consensus 631 ~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~-~EiV~d---g~tGfLVdp~D~eaLA~aL~~l 706 (784)
T TIGR02470 631 VRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGP-LEIIQD---GVSGFHIDPYHGEEAAEKIVDF 706 (784)
T ss_pred ccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCH-HHHhcC---CCcEEEeCCCCHHHHHHHHHHH
Confidence 56555554 357999999999999999999999999999999998 799998 89999997 999999999987
Q ss_pred H----cCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Q 012436 421 I----SMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAI 455 (464)
Q Consensus 421 ~----~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~ 455 (464)
+ + |++.++++++++++.+ ++|||+.+++++.++.
T Consensus 707 l~kll~-dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 707 FEKCDE-DPSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5 6 9999999999999998 9999999999998765
No 20
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=2.5e-38 Score=305.03 Aligned_cols=283 Identities=22% Similarity=0.292 Sum_probs=230.3
Q ss_pred HHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHH
Q 012436 131 LSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYY 208 (464)
Q Consensus 131 ~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (464)
...+.+++.+||+||++.+...... +++..++|++++.|........ ...... ..
T Consensus 73 ~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~h~~~~~~~~--------------------~~~~~~---~~ 129 (367)
T cd05844 73 QLRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVVTFHGFDATTSL--------------------ALLLRS---RW 129 (367)
T ss_pred HHHHHHHhhCCCEEEeccCchHHHHHHHHHHcCCCEEEEEeCccccccc--------------------hhhccc---ch
Confidence 3444678889999998765443322 5668899999999943210000 000000 02
Q ss_pred HHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHH
Q 012436 209 TFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQL 288 (464)
Q Consensus 209 ~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll 288 (464)
+.+...++..++.+|.++++|+.+++.+.+....+.++.+++||+|.+.+.+. ....+..+++|+|++.+.||++.++
T Consensus 130 ~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~--~~~~~~~~i~~~G~~~~~K~~~~li 207 (367)
T cd05844 130 ALYARRRRRLARRAALFIAVSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPA--TPARRPPRILFVGRFVEKKGPLLLL 207 (367)
T ss_pred hHHHHHHHHHHHhcCEEEECCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCC--CCCCCCcEEEEEEeeccccChHHHH
Confidence 23344567778999999999999999998863336689999999998776632 2334567899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCC----
Q 012436 289 EAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI---- 364 (464)
Q Consensus 289 ~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~---- 364 (464)
+|+..+.++. |+++|+++|+++. .+++++.++++++.++|.|.|+++.+++.++|+.||++++||.
T Consensus 208 ~a~~~l~~~~----~~~~l~ivG~g~~------~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~ 277 (367)
T cd05844 208 EAFARLARRV----PEVRLVIIGDGPL------LAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPS 277 (367)
T ss_pred HHHHHHHHhC----CCeEEEEEeCchH------HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCC
Confidence 9999998775 6899999998753 3678889999888899999999999999999999999999985
Q ss_pred --CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-
Q 012436 365 --DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEMAAAARRRA- 439 (464)
Q Consensus 365 --~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~- 439 (464)
.|++|++++|||++|+|||+++.++. .+++.+ +.+|++++ |+++++++|.++++ |++.+++++.++++.+
T Consensus 278 ~~~E~~~~~~~EA~a~G~PvI~s~~~~~-~e~i~~---~~~g~~~~~~d~~~l~~~i~~l~~-~~~~~~~~~~~a~~~~~ 352 (367)
T cd05844 278 GDAEGLPVVLLEAQASGVPVVATRHGGI-PEAVED---GETGLLVPEGDVAALAAALGRLLA-DPDLRARMGAAGRRRVE 352 (367)
T ss_pred CCccCCchHHHHHHHcCCCEEEeCCCCc-hhheec---CCeeEEECCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999988 688887 78999885 99999999999999 9999999999999999
Q ss_pred HccCHHHHHHHHHH
Q 012436 440 ARFSEQRFYEDFKA 453 (464)
Q Consensus 440 ~~~s~~~~~~~~~~ 453 (464)
++|||+.+++++.+
T Consensus 353 ~~~s~~~~~~~l~~ 366 (367)
T cd05844 353 ERFDLRRQTAKLEA 366 (367)
T ss_pred HHCCHHHHHHHHhc
Confidence 89999999998865
No 21
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=3.8e-38 Score=307.23 Aligned_cols=362 Identities=22% Similarity=0.200 Sum_probs=261.5
Q ss_pred CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccccCcceehhhhch
Q 012436 47 GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSF 126 (464)
Q Consensus 47 ~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (464)
.||+++++.+++++|.+.||+|.|+...... ..... ......+.++.+.............+.. ..
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 85 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDD--ALPPI---------VELAPGVRVVRVPAGPAEYLPKEELWPY---LD 85 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCc--ccCCc---------cccccceEEEecccccccCCChhhcchh---HH
Confidence 3899999999999999999655544433221 11100 1111122333332211110000000000 01
Q ss_pred hhhHHHHHHhhhc--CCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhH
Q 012436 127 GSVYLSWEALCKF--TPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQ 202 (464)
Q Consensus 127 ~~~~~~~~~l~~~--~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (464)
.....+.+.+++. +||+||++........ +++..++|+|++.|.... ... . .....
T Consensus 86 ~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~------~~~-------~-------~~~~~ 145 (398)
T cd03800 86 EFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGA------VKR-------R-------HLGAA 145 (398)
T ss_pred HHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeecccc------cCC-------c-------ccccc
Confidence 1233344556666 9999997754433322 566789999999993220 000 0 00000
Q ss_pred HHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCC--------CCCCCCcEEE
Q 012436 203 CKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL--------ERSTEYPAII 273 (464)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~--------~~~~~~~~i~ 273 (464)
. ..........++.+++.+|.++++|+..++.+.+.++. ..++.+++||+|.+.+..... ....+.++++
T Consensus 146 ~-~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (398)
T cd03800 146 D-TYEPARRIEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPRIL 224 (398)
T ss_pred c-ccchhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhccCCCCcEEE
Confidence 0 00111122345777899999999999999999887765 456899999999876653222 1224568999
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHH
Q 012436 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLL 353 (464)
Q Consensus 274 ~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l 353 (464)
|+|++...||++.+++++..+.++. ++++++++|++.......+..+++..++++++.+++.++|+++.+++.++|
T Consensus 225 ~~gr~~~~k~~~~ll~a~~~l~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 300 (398)
T cd03800 225 AVGRLDPRKGIDTLIRAYAELPELR----ERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALY 300 (398)
T ss_pred EEcccccccCHHHHHHHHHHHHHhC----CCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHH
Confidence 9999999999999999999998765 589999999987654444456678888889988999999999999999999
Q ss_pred hcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHH
Q 012436 354 GGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEM 431 (464)
Q Consensus 354 ~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~ 431 (464)
+.||++++||..|++|++++|||++|+|||+++.++. .+++.+ +.+|++++ |+++++++|.++++ |++.++++
T Consensus 301 ~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~-~e~i~~---~~~g~~~~~~~~~~l~~~i~~l~~-~~~~~~~~ 375 (398)
T cd03800 301 RAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGP-RDIVVD---GVTGLLVDPRDPEALAAALRRLLT-DPALRRRL 375 (398)
T ss_pred HhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCH-HHHccC---CCCeEEeCCCCHHHHHHHHHHHHh-CHHHHHHH
Confidence 9999999999999999999999999999999999887 788888 78999886 89999999999999 99999999
Q ss_pred HHHHHHHH-HccCHHHHHHHHH
Q 012436 432 AAAARRRA-ARFSEQRFYEDFK 452 (464)
Q Consensus 432 ~~~~~~~~-~~~s~~~~~~~~~ 452 (464)
++++++.+ ++|||+.+++++.
T Consensus 376 ~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 376 SRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred HHHHHHHHHHhCCHHHHHHHHh
Confidence 99999999 9999999999875
No 22
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=1.4e-37 Score=305.24 Aligned_cols=401 Identities=15% Similarity=0.070 Sum_probs=263.2
Q ss_pred ccceEEEecCCCCCC---CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHH--hhcCcc----------cC
Q 012436 33 RTTSVAFFHPNTNDG---GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAV--DRFGVE----------LL 97 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~---GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~----------~~ 97 (464)
++|||+|+..-..+. ||..-++..|.++|++.|| +|.++.+.++.-.... .... ..+... ..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~--~v~v~~P~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGV--EVRTLVPGYPAVLAGI-EDAEQVHSFPDLFGGPARLLAARA 78 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCC--cEEEEeCCCcchhhhh-cCceEEEEEeeeCCceEEEEEEEe
Confidence 569999998766544 8999999999999999995 5555555442111000 0000 001100 00
Q ss_pred CCceeeeeecccccccc--cCc------ceehhhhchhhhHHHHHHh----hhcCCcEEEecccccccch-hhh---ccC
Q 012436 98 HPPKVVHLYRRKWIEES--TYP------RFTMIGQSFGSVYLSWEAL----CKFTPLYYFDTSGYAFTYP-LAR---IFG 161 (464)
Q Consensus 98 ~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~l----~~~~~Dvv~~~~~~~~~~~-~~~---~~~ 161 (464)
+++.++.+....+.... .+. ...-..++..+...+.+++ .+.+|||||+|..++..++ +.+ ..+
T Consensus 79 ~~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~~~~ 158 (485)
T PRK14099 79 GGLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSGRPA 158 (485)
T ss_pred CCceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCCCCC
Confidence 12344444333322211 111 1111112222222333333 3579999999987777666 222 346
Q ss_pred ceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHh-
Q 012436 162 CRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLW- 240 (464)
Q Consensus 162 ~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~- 240 (464)
+|.|+|+|+............ .+.+ ... .........++.. ..+.+..++.||.|+++|+..++.+.+..
T Consensus 159 ~~~V~TiHn~~~qg~~~~~~~----~~~~---~~~-~~~~~~~~~~~~~-~~~~k~~i~~ad~vitVS~~~a~ei~~~~~ 229 (485)
T PRK14099 159 PGTVFTIHNLAFQGQFPRELL----GALG---LPP-SAFSLDGVEYYGG-IGYLKAGLQLADRITTVSPTYALEIQGPEA 229 (485)
T ss_pred CCEEEeCCCCCCCCcCCHHHH----HHcC---CCh-HHcCchhhhhCCC-ccHHHHHHHhcCeeeecChhHHHHHhcccC
Confidence 899999995321100000000 0000 000 0000000000000 02356778999999999999999987532
Q ss_pred C---------CCCCeEEecCCCCCCCCccCCCC----------------------------CCCCCcEEEEEeccCCCCC
Q 012436 241 G---------IPDRIKRVYPPCDTSGLQVLPLE----------------------------RSTEYPAIISVAQFRPEKA 283 (464)
Q Consensus 241 ~---------~~~~i~~i~~~~d~~~~~~~~~~----------------------------~~~~~~~i~~~G~~~~~K~ 283 (464)
+ ...++.+|+||+|.+.|.+.... ..++.+.++++||+.+.||
T Consensus 230 g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG 309 (485)
T PRK14099 230 GMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKG 309 (485)
T ss_pred CcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCcccc
Confidence 1 15789999999999877643211 1124578999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcE-EEccCCChhHHHHHH-hcCcEEEE
Q 012436 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRDLVKLL-GGAVVGIH 361 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v-~~~g~~~~~~~~~~l-~~ad~~v~ 361 (464)
++.+++|+..+.+. +++|+++|+|+. .+.+++++++++++ +++ .++|+. +++..+| +.||++++
T Consensus 310 ~d~Li~A~~~l~~~------~~~lvivG~G~~----~~~~~l~~l~~~~~--~~v~~~~G~~--~~l~~~~~a~aDifv~ 375 (485)
T PRK14099 310 LDLLLEALPTLLGE------GAQLALLGSGDA----ELEARFRAAAQAYP--GQIGVVIGYD--EALAHLIQAGADALLV 375 (485)
T ss_pred HHHHHHHHHHHHhc------CcEEEEEecCCH----HHHHHHHHHHHHCC--CCEEEEeCCC--HHHHHHHHhcCCEEEE
Confidence 99999999988653 789999999852 34467777777764 345 789984 8888887 57999999
Q ss_pred cCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccC------CccceeecC--CHHHHHHHHHH---HHcCCHHHHHH
Q 012436 362 SMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEED------GQQTGFLAQ--NAEEYADAIVK---IISMPETERLE 430 (464)
Q Consensus 362 ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~------~~~~g~~~~--~~~~la~~i~~---l~~~~~~~~~~ 430 (464)
||.+|+||++++|||+||+|+|++++||. .|++.+.. +..+|++++ |+++++++|.+ +++ |++.+++
T Consensus 376 PS~~E~fGl~~lEAma~G~ppVvs~~GGl-~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~-d~~~~~~ 453 (485)
T PRK14099 376 PSRFEPCGLTQLCALRYGAVPVVARVGGL-ADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFA-DPVAWRR 453 (485)
T ss_pred CCccCCCcHHHHHHHHCCCCcEEeCCCCc-cceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 99999999999999999999999999998 67776510 015899986 99999999987 677 9999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcC
Q 012436 431 MAAAARRRAARFSEQRFYEDFKAAIRPILCHAA 463 (464)
Q Consensus 431 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 463 (464)
+++++++ ++|||+.+++++.++|++++..++
T Consensus 454 l~~~~~~--~~fSw~~~a~~y~~lY~~l~~~~~ 484 (485)
T PRK14099 454 LQRNGMT--TDVSWRNPAQHYAALYRSLVAERR 484 (485)
T ss_pred HHHHhhh--hcCChHHHHHHHHHHHHHHHhhhC
Confidence 9998863 789999999999999999887654
No 23
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=7.2e-38 Score=308.68 Aligned_cols=395 Identities=15% Similarity=0.080 Sum_probs=258.5
Q ss_pred ceEEEecCCCCCC---CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhh-----cCc----ccCCCcee
Q 012436 35 TSVAFFHPNTNDG---GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDR-----FGV----ELLHPPKV 102 (464)
Q Consensus 35 mkI~~~~~~~~~~---GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~ 102 (464)
|||++++..+.+. ||.+.++..|+++|++.| ++|.++++.++.-.... ...... ..+ ....++++
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G--~~V~v~~p~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gv~v 77 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALG--HDVRVLLPGYPAIREKL-RDAQVVGRLDLFTVLFGHLEGDGVPV 77 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCC--CcEEEEecCCcchhhhh-cCceEEEEeeeEEEEEEeEEcCCceE
Confidence 8999998654332 899999999999999999 55666666542111000 000000 000 01233456
Q ss_pred eeeecccccccc-cCcceehhhhchhhhHHHHHHhhh--cCCcEEEecccccccch-hhh-c-----cCceEEEEeeCCc
Q 012436 103 VHLYRRKWIEES-TYPRFTMIGQSFGSVYLSWEALCK--FTPLYYFDTSGYAFTYP-LAR-I-----FGCRVICYTHYPT 172 (464)
Q Consensus 103 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~--~~~Dvv~~~~~~~~~~~-~~~-~-----~~~p~v~~~h~p~ 172 (464)
+.+....+.... .+.......++......+.+.++. .+||+||+|...+..++ +++ . .++|+|+|+|+..
T Consensus 78 ~~v~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~ 157 (466)
T PRK00654 78 YLIDAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNLA 157 (466)
T ss_pred EEEeCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCCc
Confidence 655543332211 121111111111111222333332 48999999987666555 232 2 3799999999543
Q ss_pred chhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHH-h--------C-C
Q 012436 173 ISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKL-W--------G-I 242 (464)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~-~--------~-~ 242 (464)
..........+ .. ......+ . ...........+.+..++.+|.++++|+..++.+... + + .
T Consensus 158 ~~g~~~~~~~~----~~---~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~ 228 (466)
T PRK00654 158 YQGLFPAEILG----EL---GLPAEAF-H-LEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRAR 228 (466)
T ss_pred CCCcCCHHHHH----Hc---CCChHHc-C-chhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhc
Confidence 11000000000 00 0000000 0 0000000001234567799999999999999888642 1 1 1
Q ss_pred CCCeEEecCCCCCCCCccCCCC---------------------------CCCCCcEEEEEeccCCCCChHHHHHHHHHHH
Q 012436 243 PDRIKRVYPPCDTSGLQVLPLE---------------------------RSTEYPAIISVAQFRPEKAHPLQLEAFSVAL 295 (464)
Q Consensus 243 ~~~i~~i~~~~d~~~~~~~~~~---------------------------~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~ 295 (464)
..++.+|+||+|.+.+.+.... ..++.++++++||+.+.||++.+++|++++.
T Consensus 229 ~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~ 308 (466)
T PRK00654 229 SGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELL 308 (466)
T ss_pred ccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHH
Confidence 5689999999999987642210 0125679999999999999999999999987
Q ss_pred HHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE-ccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHH
Q 012436 296 RKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVE 374 (464)
Q Consensus 296 ~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~E 374 (464)
++ +++|+|+|+|+. .+.+++++++++++ .++.+ .|+ +.+.+..+|+.||++++||.+|+||++++|
T Consensus 309 ~~------~~~lvivG~g~~----~~~~~l~~l~~~~~--~~v~~~~g~-~~~~~~~~~~~aDv~v~PS~~E~~gl~~lE 375 (466)
T PRK00654 309 EQ------GGQLVLLGTGDP----ELEEAFRALAARYP--GKVGVQIGY-DEALAHRIYAGADMFLMPSRFEPCGLTQLY 375 (466)
T ss_pred hc------CCEEEEEecCcH----HHHHHHHHHHHHCC--CcEEEEEeC-CHHHHHHHHhhCCEEEeCCCCCCchHHHHH
Confidence 53 789999998742 34567888888875 35665 455 666678999999999999999999999999
Q ss_pred HHHhCCcEEEeCCCCCccceecccCCc------cceeecC--CHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHccCH
Q 012436 375 YMAAGAIPIAHNSAGPKMDIVLEEDGQ------QTGFLAQ--NAEEYADAIVKIISM--PETERLEMAAAARRRAARFSE 444 (464)
Q Consensus 375 a~a~G~PvI~~~~~~~~~~~v~~~~~~------~~g~~~~--~~~~la~~i~~l~~~--~~~~~~~~~~~~~~~~~~~s~ 444 (464)
||+||+|+|+++.+|. .|++.+ + .+|++++ |+++++++|.++++. +++.+.++++++.+ ++|||
T Consensus 376 Ama~G~p~V~~~~gG~-~e~v~~---~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~--~~fsw 449 (466)
T PRK00654 376 ALRYGTLPIVRRTGGL-ADTVID---YNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQAMA--QDFSW 449 (466)
T ss_pred HHHCCCCEEEeCCCCc-cceeec---CCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc--cCCCh
Confidence 9999999999999998 688877 6 8899986 999999999987641 55667777776643 78999
Q ss_pred HHHHHHHHHHHHHHHh
Q 012436 445 QRFYEDFKAAIRPILC 460 (464)
Q Consensus 445 ~~~~~~~~~~~~~~~~ 460 (464)
+.+++++.++|++++.
T Consensus 450 ~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 450 DKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998864
No 24
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=1.6e-37 Score=298.62 Aligned_cols=267 Identities=15% Similarity=0.139 Sum_probs=216.5
Q ss_pred hcCCcEEEecccccccchhhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHH
Q 012436 138 KFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYG 216 (464)
Q Consensus 138 ~~~~Dvv~~~~~~~~~~~~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
..++|+||.+........+.+ ..+.|++.++|... +.
T Consensus 97 ~~~~~vi~v~~~~~~~~~~~~~~~~~~~v~~~h~~~------------------------------------------~~ 134 (380)
T PRK15484 97 ITKDSVIVIHNSMKLYRQIRERAPQAKLVMHMHNAF------------------------------------------EP 134 (380)
T ss_pred CCCCcEEEEeCcHHhHHHHHhhCCCCCEEEEEeccc------------------------------------------Ch
Confidence 356899987664332222333 56789999999321 01
Q ss_pred HHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC-------CCCCCCcEEEEEeccCCCCChHHHHH
Q 012436 217 LVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL-------ERSTEYPAIISVAQFRPEKAHPLQLE 289 (464)
Q Consensus 217 ~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~-------~~~~~~~~i~~~G~~~~~K~~~~ll~ 289 (464)
..++.++.++++|++.++.+.+.++ ..++.+||||+|.+.+.+... ....+..+++|+|++.+.||++.+++
T Consensus 135 ~~~~~~~~ii~~S~~~~~~~~~~~~-~~~i~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~ 213 (380)
T PRK15484 135 ELLDKNAKIIVPSQFLKKFYEERLP-NADISIVPNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQ 213 (380)
T ss_pred hHhccCCEEEEcCHHHHHHHHhhCC-CCCEEEecCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHH
Confidence 1235679999999999999988654 678999999999876653211 11235678999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEEcCCCCC---ccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCC-C
Q 012436 290 AFSVALRKLDADLPRPRLQFVGSCRNK---SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI-D 365 (464)
Q Consensus 290 a~~~l~~~~~~~~p~~~l~i~G~~~~~---~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~-~ 365 (464)
|+..+.++. |+++|+++|+++.. +...+.+++++++++++ .++.|.|+++.+++.++|+.||++++||. .
T Consensus 214 A~~~l~~~~----p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~ 287 (380)
T PRK15484 214 AFEKLATAH----SNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLADLVVVPSQVE 287 (380)
T ss_pred HHHHHHHhC----CCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCc
Confidence 999998766 69999999988643 23356667887877775 57999999999999999999999999996 5
Q ss_pred CCCChHHHHHHHhCCcEEEeCCCCCccceecccCCcccee-ecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hc
Q 012436 366 EHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGF-LAQ--NAEEYADAIVKIISMPETERLEMAAAARRRA-AR 441 (464)
Q Consensus 366 e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~-~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~ 441 (464)
|+||++++|||+||+|||+|+.+|. .|++.+ +.+|+ +++ |+++++++|.++++ |++. .++++++++.+ ++
T Consensus 288 E~f~~~~lEAma~G~PVI~s~~gg~-~Eiv~~---~~~G~~l~~~~d~~~la~~I~~ll~-d~~~-~~~~~~ar~~~~~~ 361 (380)
T PRK15484 288 EAFCMVAVEAMAAGKPVLASTKGGI-TEFVLE---GITGYHLAEPMTSDSIISDINRTLA-DPEL-TQIAEQAKDFVFSK 361 (380)
T ss_pred cccccHHHHHHHcCCCEEEeCCCCc-Hhhccc---CCceEEEeCCCCHHHHHHHHHHHHc-CHHH-HHHHHHHHHHHHHh
Confidence 9999999999999999999999988 789988 88998 443 99999999999999 9875 78999999988 99
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 012436 442 FSEQRFYEDFKAAIRPIL 459 (464)
Q Consensus 442 ~s~~~~~~~~~~~~~~~~ 459 (464)
|||+.+++++.++|++..
T Consensus 362 fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 362 YSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999998754
No 25
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=4.5e-38 Score=301.24 Aligned_cols=347 Identities=17% Similarity=0.200 Sum_probs=249.4
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||+++.+..+..||+|+++.+++++|.+.|+++++.++++.... .....+. .+.... .....+.
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~-~~~~~~~----~~~~~~--~~~~~~~-------- 65 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKM-DKAWLKE----IKYAQS--FSNIKLS-------- 65 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCC-ChHHHHh----cchhcc--cccchhh--------
Confidence 899999988766689999999999999999666888887765321 1111111 110000 0000000
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCce--EEEEeeCCcchhhhhhcccccccccCC
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCR--VICYTHYPTISLDMISRVREGSSMYNN 190 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p--~v~~~h~p~~~~~~~~~~~~~~~~~~~ 190 (464)
.. ........+.+.+++.+||+||++...+..+. +++..+.| ++.+.|....
T Consensus 66 ---~~----~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~----------------- 121 (359)
T PRK09922 66 ---FL----RRAKHVYNFSKWLKETQPDIVICIDVISCLYANKARKKSGKQFKIFSWPHFSLD----------------- 121 (359)
T ss_pred ---hh----cccHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHHHHhCCCCeEEEEecCccc-----------------
Confidence 00 00112345557788999999998765443332 33344544 4555562110
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCc
Q 012436 191 NASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYP 270 (464)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~ 270 (464)
... ... ...++.+|.++++|+..++.+.+.+...+++.++|||+|.+.+.. +.....+++
T Consensus 122 ------~~~-------~~~------~~~~~~~d~~i~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~~-~~~~~~~~~ 181 (359)
T PRK09922 122 ------HKK-------HAE------CKKITCADYHLAISSGIKEQMMARGISAQRISVIYNPVEIKTIII-PPPERDKPA 181 (359)
T ss_pred ------ccc-------hhh------hhhhhcCCEEEEcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHccC-CCcccCCCc
Confidence 000 000 011278999999999999999875323668999999999654431 112224468
Q ss_pred EEEEEeccC--CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC--h
Q 012436 271 AIISVAQFR--PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL--Y 346 (464)
Q Consensus 271 ~i~~~G~~~--~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~--~ 346 (464)
+++|+||+. ..||++.+++++..+. ++++|+++|+|++. +++++.++++++.++|.|+|+++ .
T Consensus 182 ~i~~~Grl~~~~~k~~~~l~~a~~~~~-------~~~~l~ivG~g~~~------~~l~~~~~~~~l~~~v~f~G~~~~~~ 248 (359)
T PRK09922 182 VFLYVGRLKFEGQKNVKELFDGLSQTT-------GEWQLHIIGDGSDF------EKCKAYSRELGIEQRIIWHGWQSQPW 248 (359)
T ss_pred EEEEEEEEecccCcCHHHHHHHHHhhC-------CCeEEEEEeCCccH------HHHHHHHHHcCCCCeEEEecccCCcH
Confidence 899999986 4699999999998773 27899999999753 67889999999999999999884 4
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC-CCCCccceecccCCccceeecC--CHHHHHHHHHHHHcC
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN-SAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISM 423 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~-~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~ 423 (464)
+++.++|+.+|++++||..|+||++++||||||+|||+++ .+|. .|++.+ +.+|++++ |+++++++|.++++
T Consensus 249 ~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~-~eiv~~---~~~G~lv~~~d~~~la~~i~~l~~- 323 (359)
T PRK09922 249 EVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGP-RDIIKP---GLNGELYTPGNIDEFVGKLNKVIS- 323 (359)
T ss_pred HHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCCh-HHHccC---CCceEEECCCCHHHHHHHHHHHHh-
Confidence 8899999999999999999999999999999999999999 7777 789988 89998875 99999999999999
Q ss_pred CHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 012436 424 PETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
|++.+. .....+.+++|+.+.+.+++.+.+..+..
T Consensus 324 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 324 GEVKYQ--HDAIPNSIERFYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred CcccCC--HHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 887541 12223334788999999999999988764
No 26
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=4.2e-37 Score=294.00 Aligned_cols=285 Identities=17% Similarity=0.128 Sum_probs=221.9
Q ss_pred hhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEE-eeC-CcchhhhhhcccccccccCCCcccccchhhhH
Q 012436 127 GSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICY-THY-PTISLDMISRVREGSSMYNNNASIAQSNWLSQ 202 (464)
Q Consensus 127 ~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~-~h~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (464)
.....+..++++.+||+||++...+..+. .++..++|++++ .|. +. ....
T Consensus 267 ~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~~~~-------------------------~~~~- 320 (578)
T PRK15490 267 YGIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGVPRIQLGLRGLPP-------------------------VVRK- 320 (578)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEEEEeecccCC-------------------------cchh-
Confidence 34566777899999999998877654443 555789999765 441 10 0000
Q ss_pred HHHHHHHHHHHHHH--HHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCC-----------CCCCC
Q 012436 203 CKIVYYTFFSWMYG--LVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL-----------ERSTE 268 (464)
Q Consensus 203 ~~~~~~~~~~~~~~--~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~-----------~~~~~ 268 (464)
+....-+....+ .+.+.+| +++.|...++.+.+.++. ++++.+||||+|.+.|.+... ...++
T Consensus 321 --r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~ 397 (578)
T PRK15490 321 --RLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDA 397 (578)
T ss_pred --hHHHHHHHHhhhhceeEecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCC
Confidence 000010111111 2235556 778899999999887766 678999999999876654211 01234
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
.++++++|++.+.||+..+++++.++.+.. |+++|+|+|+|+. .+++++.++++++.++|.|.|+. ++
T Consensus 398 ~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~----pdirLvIVGdG~~------~eeLk~la~elgL~d~V~FlG~~--~D 465 (578)
T PRK15490 398 DTTIGGVFRFVGDKNPFAWIDFAARYLQHH----PATRFVLVGDGDL------RAEAQKRAEQLGILERILFVGAS--RD 465 (578)
T ss_pred CcEEEEEEEEehhcCHHHHHHHHHHHHhHC----CCeEEEEEeCchh------HHHHHHHHHHcCCCCcEEECCCh--hh
Confidence 578999999999999999999999887765 6999999999864 37899999999999999999996 89
Q ss_pred HHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHH---HHHHcC
Q 012436 349 LVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAI---VKIISM 423 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i---~~l~~~ 423 (464)
+..+|+.+|++++||.+|+||++++|||++|+|||+|+.+|. .|++.+ +.+|++++ |++++++++ ..+.+
T Consensus 466 v~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvGG~-~EiV~d---G~nG~LVp~~D~~aLa~ai~lA~aL~~- 540 (578)
T PRK15490 466 VGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGS-AECFIE---GVSGFILDDAQTVNLDQACRYAEKLVN- 540 (578)
T ss_pred HHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCCCc-HHHccc---CCcEEEECCCChhhHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999998 788888 89999987 777887776 44444
Q ss_pred CHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHH
Q 012436 424 PETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRP 457 (464)
Q Consensus 424 ~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~ 457 (464)
+.+....+++++++.+ ++|||+.++++|.++|..
T Consensus 541 ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 541 LWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 5555667889999999 899999999999999875
No 27
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=5.7e-37 Score=295.12 Aligned_cols=373 Identities=13% Similarity=0.084 Sum_probs=238.7
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||+++...++.| |+|+.+.+|++.|.+.||++++....+...... .. ....+.......++....
T Consensus 1 mkil~i~~~l~~G-Gaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~~ 66 (405)
T PRK10125 1 MNILQFNVRLAEG-GAAGVALDLHQRALQQGLASHFVYGYGKGGKES-VS------------HQNYPQVIKHTPRMTAMA 66 (405)
T ss_pred CeEEEEEeeecCC-chhHHHHHHHHHHHhcCCeEEEEEecCCCcccc-cc------------cCCcceEEEecccHHHHH
Confidence 8999998877665 999999999999999998888766654421110 00 000000000001110000
Q ss_pred cCcceehh-hhchhhhHHHHHHh-hhcCCcEEEecccccccch---h--------hhccCceEEEEeeCCcchhhhhhcc
Q 012436 115 TYPRFTMI-GQSFGSVYLSWEAL-CKFTPLYYFDTSGYAFTYP---L--------ARIFGCRVICYTHYPTISLDMISRV 181 (464)
Q Consensus 115 ~~~~~~~~-~~~~~~~~~~~~~l-~~~~~Dvv~~~~~~~~~~~---~--------~~~~~~p~v~~~h~p~~~~~~~~~~ 181 (464)
.....+.. ...+.....+.+.+ ++++|||||.|..+...+. + .+..++|+|+|+|.-...+-...+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~- 145 (405)
T PRK10125 67 NIALFRLFNRDLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAF- 145 (405)
T ss_pred HHHHHHhcchhhcchHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCC-
Confidence 00000000 11223445555556 6789999997766553221 1 224578999999932211100000
Q ss_pred cccccccCC---Cc-ccccc-hhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCC
Q 012436 182 REGSSMYNN---NA-SIAQS-NWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTS 256 (464)
Q Consensus 182 ~~~~~~~~~---~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~ 256 (464)
...+..|.. .. ..... ..........+.......+.+.+.++.+|++|++.++.+.+.++ ..++.+||||+|.+
T Consensus 146 ~~~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~-~~~i~vI~NGid~~ 224 (405)
T PRK10125 146 TDGCEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYG-PGRCRIINNGIDMA 224 (405)
T ss_pred CcccccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcC-CCCEEEeCCCcCcc
Confidence 001111110 00 00000 00011111111122223344456788999999999999987766 57899999999964
Q ss_pred CCccC----CCCCCCCCcEEEEEecc--CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHH
Q 012436 257 GLQVL----PLERSTEYPAIISVAQF--RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI 330 (464)
Q Consensus 257 ~~~~~----~~~~~~~~~~i~~~G~~--~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~ 330 (464)
.+... +....++++.++++|+. .+.||++.+++|+..+. ++++|+++|.++.. .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~-------~~~~L~ivG~g~~~------~------- 284 (405)
T PRK10125 225 TEAILAELPPVRETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG-------DKIELHTFGKFSPF------T------- 284 (405)
T ss_pred cccccccccccccCCCCCEEEEEEeccccCCccHHHHHHHHHhCC-------CCeEEEEEcCCCcc------c-------
Confidence 32211 11123456789999984 46799999999998762 37899999987521 0
Q ss_pred hcCCCCcEEEccCC-ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-
Q 012436 331 ELKVDGNVEFYKNL-LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ- 408 (464)
Q Consensus 331 ~~~l~~~v~~~g~~-~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~- 408 (464)
.+++.++|+. +.+++.++|++||++++||..|+||++++||||||+|||+|+.||. +|++.+ .+|++++
T Consensus 285 ----~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~-~Eiv~~----~~G~lv~~ 355 (405)
T PRK10125 285 ----AGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAA-REVLQK----SGGKTVSE 355 (405)
T ss_pred ----ccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCCh-HHhEeC----CcEEEECC
Confidence 2468888987 5689999999999999999999999999999999999999999998 788877 4899987
Q ss_pred -CHHHHHHHHHHHHcCCHHHHHH----HHHHHHHHH-HccCHHHHHHHHHHHHHHH
Q 012436 409 -NAEEYADAIVKIISMPETERLE----MAAAARRRA-ARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 409 -~~~~la~~i~~l~~~~~~~~~~----~~~~~~~~~-~~~s~~~~~~~~~~~~~~~ 458 (464)
|++++++++ +++..++ +..++++.+ ++||++.+++++.++|+++
T Consensus 356 ~d~~~La~~~------~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 356 EEVLQLAQLS------KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred CCHHHHHhcc------CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999854 4333332 234577777 8899999999999999863
No 28
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=4.9e-37 Score=301.78 Aligned_cols=394 Identities=16% Similarity=0.131 Sum_probs=263.4
Q ss_pred cccceEEEecCCCCCC---CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhH--HHHH--HhhcCcccC-------
Q 012436 32 NRTTSVAFFHPNTNDG---GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSL--LARA--VDRFGVELL------- 97 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~---GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~--~~~~--~~~~~~~~~------- 97 (464)
++.|||+++..-..+. ||..-++..|.++|++.| ++|.++.+.+..-.... .... ...+.+.+.
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g--~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEG--FEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLH 80 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCC--CeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEE
Confidence 3449999998765544 899999999999999999 55556565542111100 0000 000111000
Q ss_pred --------CCceeeeeecccccccc-cCcc-------eehhhhchhhhHHHHHHhhh--cCCcEEEecccccccch-hhh
Q 012436 98 --------HPPKVVHLYRRKWIEES-TYPR-------FTMIGQSFGSVYLSWEALCK--FTPLYYFDTSGYAFTYP-LAR 158 (464)
Q Consensus 98 --------~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~l~~--~~~Dvv~~~~~~~~~~~-~~~ 158 (464)
.+++++.+....+..+. .+.. ..-..++......+.+.+++ .+|||||+|..++...+ +.+
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~ 160 (489)
T PRK14098 81 VKVTALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLK 160 (489)
T ss_pred EEEecccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHH
Confidence 01233333222221111 1110 01111222222333444443 58999999987766665 222
Q ss_pred -c-------cCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHH-HHHHHHH-----HHHHHHHHhhcCCE
Q 012436 159 -I-------FGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQC-KIVYYTF-----FSWMYGLVGSCADL 224 (464)
Q Consensus 159 -~-------~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~ad~ 224 (464)
. .++|+|+|+|+... .+... ...+.... ....... ...+.+..+..||.
T Consensus 161 ~~~~~~~~~~~~~~V~TiHn~~~---------------qg~~~--~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~ 223 (489)
T PRK14098 161 TVYADHEFFKDIKTVLTIHNVYR---------------QGVLP--FKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADL 223 (489)
T ss_pred HHhhhccccCCCCEEEEcCCCcc---------------cCCCC--HHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCc
Confidence 2 37999999995321 00000 00000000 0000000 01345667899999
Q ss_pred EEEcCHHHHHHHHHH----hCC-------CCCeEEecCCCCCCCCccCCCC----------------------------C
Q 012436 225 AMVNSSWTQSHIEKL----WGI-------PDRIKRVYPPCDTSGLQVLPLE----------------------------R 265 (464)
Q Consensus 225 vi~~S~~~~~~~~~~----~~~-------~~~i~~i~~~~d~~~~~~~~~~----------------------------~ 265 (464)
|+++|+..++.+... ++. ..++.+|+||+|.+.+.+.... .
T Consensus 224 VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~ 303 (489)
T PRK14098 224 LTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPF 303 (489)
T ss_pred ceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCC
Confidence 999999999988752 121 4789999999999887643211 0
Q ss_pred CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 266 STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 266 ~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
.++.+.++++||+.+.||++.+++|+..+.+. +++|+|+|+|+. .+.++++++++++ +++|.+.|.++
T Consensus 304 ~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~------~~~lvivG~G~~----~~~~~l~~l~~~~--~~~V~~~g~~~ 371 (489)
T PRK14098 304 DEETPLVGVIINFDDFQGAELLAESLEKLVEL------DIQLVICGSGDK----EYEKRFQDFAEEH--PEQVSVQTEFT 371 (489)
T ss_pred ccCCCEEEEeccccccCcHHHHHHHHHHHHhc------CcEEEEEeCCCH----HHHHHHHHHHHHC--CCCEEEEEecC
Confidence 13457999999999999999999999998752 799999999853 3457888888876 46899999999
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccC-CccceeecC--CHHHHHHHHHHHH-
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEED-GQQTGFLAQ--NAEEYADAIVKII- 421 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~-~~~~g~~~~--~~~~la~~i~~l~- 421 (464)
++++..+|+.||++++||..|++|++.+|||+||+|+|+++.||. .|.+.+.. .+.+|++++ |+++++++|.+++
T Consensus 372 ~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl-~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 372 DAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGI-VETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred HHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCC-ceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 56664211 157899986 9999999998865
Q ss_pred --cCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 012436 422 --SMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 422 --~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
+ |++.++++++++.+ ++|||+..++++.++|++++.
T Consensus 451 ~~~-~~~~~~~~~~~~~~--~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 451 LYH-DEERWEELVLEAME--RDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHc-CHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHhc
Confidence 5 77777777665532 789999999999999998764
No 29
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=3.3e-37 Score=305.57 Aligned_cols=395 Identities=15% Similarity=0.109 Sum_probs=262.1
Q ss_pred ceEEEecCCCCC---CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHH--HHhhcCc-------------cc
Q 012436 35 TSVAFFHPNTND---GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLAR--AVDRFGV-------------EL 96 (464)
Q Consensus 35 mkI~~~~~~~~~---~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~-------------~~ 96 (464)
|||++++.-+.+ .||...++..|+++|++.| ++|.++++.++......... ......+ ..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G--~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALG--HDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGV 78 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcC--CeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEE
Confidence 899999876444 3899999999999999999 55556666543211110000 0000000 11
Q ss_pred CCCceeeeeeccccccc--ccCc--ceehhhhchhhhHHHHHHhh--hcCCcEEEecccccccch--hhhccC---ceEE
Q 012436 97 LHPPKVVHLYRRKWIEE--STYP--RFTMIGQSFGSVYLSWEALC--KFTPLYYFDTSGYAFTYP--LARIFG---CRVI 165 (464)
Q Consensus 97 ~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~l~--~~~~Dvv~~~~~~~~~~~--~~~~~~---~p~v 165 (464)
.++++++.+....+... ..+. ......++......+.+.++ ..+||+||++..++..++ +++..+ +|+|
T Consensus 79 ~~~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~~~~~~~v 158 (473)
T TIGR02095 79 VEGVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYRPNPIKTV 158 (473)
T ss_pred ECCceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhccCCCCCEE
Confidence 12334554443322211 0121 11111112222233333343 368999999887666555 333443 9999
Q ss_pred EEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHH-hC---
Q 012436 166 CYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKL-WG--- 241 (464)
Q Consensus 166 ~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~-~~--- 241 (464)
+++|+............. ..+ ... .... .......-...+.+..++.||.++++|+..++.+... ++
T Consensus 159 ~TiH~~~~~g~~~~~~~~----~~~---~~~-~~~~-~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l 229 (473)
T TIGR02095 159 FTIHNLAYQGVFPADDFS----ELG---LPP-EYFH-MEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGL 229 (473)
T ss_pred EEcCCCccCCcCCHHHHH----HcC---CCh-HHcC-chhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccc
Confidence 999954311000000000 000 000 0000 0000000011245677899999999999998888642 11
Q ss_pred ------CCCCeEEecCCCCCCCCccCCCC----------------------------CCCCCcEEEEEeccCCCCChHHH
Q 012436 242 ------IPDRIKRVYPPCDTSGLQVLPLE----------------------------RSTEYPAIISVAQFRPEKAHPLQ 287 (464)
Q Consensus 242 ------~~~~i~~i~~~~d~~~~~~~~~~----------------------------~~~~~~~i~~~G~~~~~K~~~~l 287 (464)
.+.++.+|+||+|.+.+.+.... ..++.+.++|+||+.+.||++.+
T Consensus 230 ~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~l 309 (473)
T TIGR02095 230 DGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLL 309 (473)
T ss_pred hhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHH
Confidence 14689999999999877642110 01256899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCC
Q 012436 288 LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEH 367 (464)
Q Consensus 288 l~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~ 367 (464)
++|+..+.+. +++|+|+|+|+. .+.+++++++++++ .++.+.+..+.+++..+|+.||++++||..|+
T Consensus 310 i~a~~~l~~~------~~~lvi~G~g~~----~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~ 377 (473)
T TIGR02095 310 LAALPELLEL------GGQLVVLGTGDP----ELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMPSRFEP 377 (473)
T ss_pred HHHHHHHHHc------CcEEEEECCCCH----HHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCC
Confidence 9999998764 699999999852 34567777777654 57888888888899999999999999999999
Q ss_pred CChHHHHHHHhCCcEEEeCCCCCccceecccCCc------cceeecC--CHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 012436 368 FGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQ------QTGFLAQ--NAEEYADAIVKIISM---PETERLEMAAAAR 436 (464)
Q Consensus 368 ~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~------~~g~~~~--~~~~la~~i~~l~~~---~~~~~~~~~~~~~ 436 (464)
+|++++|||+||+|||+++.+|. .|++.+ + .+|++++ |+++++++|.+++.+ +++.++++++++.
T Consensus 378 ~gl~~lEAma~G~pvI~s~~gg~-~e~v~~---~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~ 453 (473)
T TIGR02095 378 CGLTQLYAMRYGTVPIVRRTGGL-ADTVVD---GDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAM 453 (473)
T ss_pred cHHHHHHHHHCCCCeEEccCCCc-cceEec---CCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 99999999999999999999998 788877 6 8999886 999999999987751 6777788887765
Q ss_pred HHHHccCHHHHHHHHHHHHHHH
Q 012436 437 RRAARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 437 ~~~~~~s~~~~~~~~~~~~~~~ 458 (464)
+ ++|||+.+++++.++|+++
T Consensus 454 ~--~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 454 S--QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred c--cCCCcHHHHHHHHHHHHhC
Confidence 3 7899999999999999863
No 30
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=8.1e-37 Score=293.08 Aligned_cols=341 Identities=19% Similarity=0.192 Sum_probs=259.7
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||+++++.++. |+++++.+++++|.+.||++.++....... .... ... ..... .+ .+.
T Consensus 1 ki~~~~~~~~~--~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~--~~~~-~~~-----~~~~~--~~------~~~---- 58 (355)
T cd03799 1 KIAYLVKEFPR--LSETFILREILALEAAGHEVEIFSLRPPED--TLVH-PED-----RAELA--RT------RYL---- 58 (355)
T ss_pred CEEEECCCCCC--cchHHHHHHHHHHHhCCCeEEEEEecCccc--cccc-ccc-----ccccc--ch------HHH----
Confidence 69999988854 488999999999999996555544433221 0000 000 00000 00 000
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhcccccccccCCCc
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (464)
......+.......+.+++.++|+||++........ .++..++|+++++|......
T Consensus 59 ----~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 117 (355)
T cd03799 59 ----ARSLALLAQALVLARELRRLGIDHIHAHFGTTPATVAMLASRLGGIPYSFTAHGKDIFR----------------- 117 (355)
T ss_pred ----HHHHHHHHHHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHHhcCCCEEEEEecccccc-----------------
Confidence 011112233344555567789999998766433322 33356899999999433100
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCCCCCCCcE
Q 012436 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEYPA 271 (464)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~~~~~~~~ 271 (464)
.... +.++..++.+|.++++|+..++.+.+.++. ..++.++|||+|.+.+.........+++.
T Consensus 118 --------~~~~--------~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~~~~~~~~~ 181 (355)
T cd03799 118 --------SPDA--------IDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPPPPPGEPLR 181 (355)
T ss_pred --------cCch--------HHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccccccCCCeE
Confidence 0000 244666789999999999999999997544 67899999999988776443223355688
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHH
Q 012436 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVK 351 (464)
Q Consensus 272 i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~ 351 (464)
++|+|++.+.||++.++++++.+.+.. ++++++++|.++.. +++++.++++++.++|.+.|+++.+++.+
T Consensus 182 i~~~g~~~~~k~~~~l~~~~~~l~~~~----~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~v~~~g~~~~~~l~~ 251 (355)
T cd03799 182 ILSVGRLVEKKGLDYLLEALALLKDRG----IDFRLDIVGDGPLR------DELEALIAELGLEDRVTLLGAKSQEEVRE 251 (355)
T ss_pred EEEEeeeccccCHHHHHHHHHHHhhcC----CCeEEEEEECCccH------HHHHHHHHHcCCCCeEEECCcCChHHHHH
Confidence 999999999999999999999988764 58999999998653 67888888888889999999999999999
Q ss_pred HHhcCcEEEEcCCC------CCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcC
Q 012436 352 LLGGAVVGIHSMID------EHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISM 423 (464)
Q Consensus 352 ~l~~ad~~v~ps~~------e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~ 423 (464)
+|++||++++||.. |++|++++|||++|+|+|+++.++. .+++.+ +.+|++++ |+++++++|.++++
T Consensus 252 ~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~-~~~i~~---~~~g~~~~~~~~~~l~~~i~~~~~- 326 (355)
T cd03799 252 LLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGI-PELVED---GETGLLVPPGDPEALADAIERLLD- 326 (355)
T ss_pred HHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCc-chhhhC---CCceEEeCCCCHHHHHHHHHHHHh-
Confidence 99999999999988 9999999999999999999999888 788888 77998885 89999999999999
Q ss_pred CHHHHHHHHHHHHHHH-HccCHHHHHHH
Q 012436 424 PETERLEMAAAARRRA-ARFSEQRFYED 450 (464)
Q Consensus 424 ~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 450 (464)
+++.+.++++++++.+ ++|||+..+++
T Consensus 327 ~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 327 DPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 9999999999999999 89999998875
No 31
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=6.6e-37 Score=294.63 Aligned_cols=353 Identities=20% Similarity=0.155 Sum_probs=259.3
Q ss_pred eEEEecCCCCC--CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 36 SVAFFHPNTND--GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 36 kI~~~~~~~~~--~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
||+++..++.+ .||+++++.+++++|.+.|+++.+++............ .. .. .. .....
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~----~~--~~------~~----~~~~~-- 62 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPL----RA--AL------RL----LLRLP-- 62 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccc----hh--cc------cc----ccccc--
Confidence 68888877776 58999999999999999996666555543321110000 00 00 00 00000
Q ss_pred ccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEeeCCcchhhhhhcccccccccCCCcc
Q 012436 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~ 193 (464)
........+...+.....+...++|++|++....... +..++|+++++|.... ...
T Consensus 63 ----~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~---~~~~~~~i~~~hd~~~------~~~----------- 118 (365)
T cd03809 63 ----RRLLWGLLFLLRAGDRLLLLLLGLDLLHSPHNTAPLL---RLRGVPVVVTIHDLIP------LRF----------- 118 (365)
T ss_pred ----cccccchhhHHHHHHHHHhhhcCCCeeeecccccCcc---cCCCCCEEEEeccchh------hhC-----------
Confidence 0000011122233444445668999999777655443 6789999999993220 000
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCC------CCC
Q 012436 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL------ERS 266 (464)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~------~~~ 266 (464)
...........+...++..++.+|.++++|+..++.+.+.++. ..++.++|||+|...+..... ...
T Consensus 119 ------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 192 (365)
T cd03809 119 ------PEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAEVLRALYL 192 (365)
T ss_pred ------cccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHHHHHHhcC
Confidence 0000011234445567888899999999999999999998874 578899999999887664321 233
Q ss_pred CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
.+.++++|+|++.+.||++.+++++..+.+.. ++++++++|.+.... ....+..+++++.++|+++|++++
T Consensus 193 ~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~----~~~~l~i~G~~~~~~-----~~~~~~~~~~~~~~~v~~~g~~~~ 263 (365)
T cd03809 193 LPRPYFLYVGTIEPRKNLERLLEAFARLPAKG----PDPKLVIVGKRGWLN-----EELLARLRELGLGDRVRFLGYVSD 263 (365)
T ss_pred CCCCeEEEeCCCccccCHHHHHHHHHHHHHhc----CCCCEEEecCCcccc-----HHHHHHHHHcCCCCeEEECCCCCh
Confidence 56689999999999999999999999998876 479999999876432 223333356777889999999999
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcCC
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMP 424 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~ 424 (464)
+++.++|+.||++++||..|++|++++|||++|+|||+++.++. .+++.+ +|++++ |+++++++|.++++ |
T Consensus 264 ~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~-~e~~~~-----~~~~~~~~~~~~~~~~i~~l~~-~ 336 (365)
T cd03809 264 EELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSL-PEVAGD-----AALYFDPLDPEALAAAIERLLE-D 336 (365)
T ss_pred hHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCc-cceecC-----ceeeeCCCCHHHHHHHHHHHhc-C
Confidence 99999999999999999999999999999999999999999887 677644 455443 89999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 012436 425 ETERLEMAAAARRRAARFSEQRFYEDFK 452 (464)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 452 (464)
++.+.++++++++.+++|+|+.+++++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 337 PALREELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999999997779999999999875
No 32
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.7e-36 Score=291.86 Aligned_cols=352 Identities=14% Similarity=0.113 Sum_probs=243.7
Q ss_pred eEEEecCC--CCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 36 SVAFFHPN--TNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 36 kI~~~~~~--~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
||+++... .+..||+++++.+++++|.+.||+++|++..... ... . ....+++++.++....
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~--~~~-----~------~~~~~i~~~~~~~~~~--- 64 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYP--KQK-----E------TEYNGVRLIHIPAPEI--- 64 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCC--CCc-----c------cccCCceEEEcCCCCc---
Confidence 68888553 3455999999999999999999655544433221 110 0 0011223333322110
Q ss_pred ccCcceehhhhchhhhHHHHHHh-hhcCCcEEEecccccc-cchhhhccCceEEEEeeCCcchhhhhhcccccccccCCC
Q 012436 114 STYPRFTMIGQSFGSVYLSWEAL-CKFTPLYYFDTSGYAF-TYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Dvv~~~~~~~~-~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~ 191 (464)
...... ........+.+ ++.++|++|....... ...+++..+.|++++.|.... ..
T Consensus 65 ---~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~---------------~~- 122 (363)
T cd04955 65 ---GGLGTI---IYDILAILHALFVKRDIDHVHALGPAIAPFLPLLRLKGKKVVVNMDGLEW---------------KR- 122 (363)
T ss_pred ---cchhhh---HHHHHHHHHHHhccCCeEEEEecCccHHHHHHHHHhcCCCEEEEccCcce---------------ee-
Confidence 000000 11111122222 3456777775443321 112445568999999994221 00
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCcc-CC---CCCCC
Q 012436 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQV-LP---LERST 267 (464)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~-~~---~~~~~ 267 (464)
..+ .....+.+.+.++..++.+|.++++|+..++.+.+.++... .+||||+|...+.. .. .....
T Consensus 123 -----~~~----~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~--~~i~ngv~~~~~~~~~~~~~~~~~~ 191 (363)
T cd04955 123 -----AKW----GRPAKRYLKFGEKLAVKFADRLIADSPGIKEYLKEKYGRDS--TYIPYGADHVVSSEEDEILKKYGLE 191 (363)
T ss_pred -----ccc----ccchhHHHHHHHHHHHhhccEEEeCCHHHHHHHHHhcCCCC--eeeCCCcChhhcchhhhhHHhcCCC
Confidence 000 01122344556677889999999999999999987776433 88999999876542 00 01112
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHH-hcCCCCcEEEccCCCh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI-ELKVDGNVEFYKNLLY 346 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~-~~~l~~~v~~~g~~~~ 346 (464)
+...++|+|++.+.||++.+++|++++.. +++|+++|+++.. ..+.+.++ .+++.++|+++|++++
T Consensus 192 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~-------~~~l~ivG~~~~~------~~~~~~~~~~~~~~~~V~~~g~~~~ 258 (363)
T cd04955 192 PGRYYLLVGRIVPENNIDDLIEAFSKSNS-------GKKLVIVGNADHN------TPYGKLLKEKAAADPRIIFVGPIYD 258 (363)
T ss_pred CCcEEEEEecccccCCHHHHHHHHHhhcc-------CceEEEEcCCCCc------chHHHHHHHHhCCCCcEEEccccCh
Confidence 34578999999999999999999988742 6899999998643 22333333 5667789999999999
Q ss_pred hHHHHHHhcCcEEEEcCCC-CCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCH
Q 012436 347 RDLVKLLGGAVVGIHSMID-EHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPE 425 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~-e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~ 425 (464)
+++.++|++||++++||.. |++|++++|||+||+|||+|+.++. .|++.+ +|+++++.+.++++|.++++ |+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~-~e~~~~-----~g~~~~~~~~l~~~i~~l~~-~~ 331 (363)
T cd04955 259 QELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN-REVLGD-----KAIYFKVGDDLASLLEELEA-DP 331 (363)
T ss_pred HHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcc-ceeecC-----CeeEecCchHHHHHHHHHHh-CH
Confidence 9999999999999999987 9999999999999999999999987 677643 67666633449999999999 99
Q ss_pred HHHHHHHHHHHHHH-HccCHHHHHHHHHHHHH
Q 012436 426 TERLEMAAAARRRA-ARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 426 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~ 456 (464)
+.+.++++++++.+ ++|||+.+++++.++|+
T Consensus 332 ~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 332 EEVSAMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999998 78999999999999874
No 33
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=1.4e-36 Score=292.77 Aligned_cols=350 Identities=20% Similarity=0.183 Sum_probs=246.3
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHH---HHHhhc-CcccCCCceeeeeeccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLA---RAVDRF-GVELLHPPKVVHLYRRKWI 111 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~ 111 (464)
||+++.+.+ .+||+++++.+++++|.+.||++++++.... +...+ ...... +. .. .++..
T Consensus 1 ki~~~~~~~-~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~-----~~~~~~~~~~~~~~~g~------~~-~~~~~--- 64 (372)
T cd03792 1 KVLHVNSTP-YGGGVAEILHSLVPLMRDLGVDTRWEVIKGD-----PEFFNVTKKFHNALQGA------DI-ELSEE--- 64 (372)
T ss_pred CeEEEeCCC-CCCcHHHHHHHHHHHHHHcCCCceEEecCCC-----hhHHHHHHHhhHhhcCC------CC-CCCHH---
Confidence 688887776 4469999999999999999977776654332 11111 111000 11 10 01100
Q ss_pred ccccCcceehhhhchhhhH-HHHHHhhhcCCcEEEecccccccchhhh-ccCceEEEEeeCCcchhhhhhcccccccccC
Q 012436 112 EESTYPRFTMIGQSFGSVY-LSWEALCKFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (464)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~Dvv~~~~~~~~~~~~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~ 189 (464)
.+ ........ ...+.+...+||+||.+......++.++ ..++|+|+++|.+..
T Consensus 65 ------~~---~~~~~~~~~~~~~~~~~~~~Dvv~~h~~~~~~~~~~~~~~~~~~i~~~H~~~~---------------- 119 (372)
T cd03792 65 ------EK---EIYLEWNEENAERPLLDLDADVVVIHDPQPLALPLFKKKRGRPWIWRCHIDLS---------------- 119 (372)
T ss_pred ------HH---HHHHHHHHHHhccccccCCCCEEEECCCCchhHHHhhhcCCCeEEEEeeeecC----------------
Confidence 00 00000000 1111244668999998877654444333 348999999994320
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCC-------
Q 012436 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP------- 262 (464)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~------- 262 (464)
... ...++ ..+..++.+|.+++.|+. .... +...+..++|||+|........
T Consensus 120 --------~~~----~~~~~----~~~~~~~~~d~~i~~~~~---~~~~--~~~~~~~vipngvd~~~~~~~~~~~~~~~ 178 (372)
T cd03792 120 --------SPN----RRVWD----FLQPYIEDYDAAVFHLPE---YVPP--QVPPRKVIIPPSIDPLSGKNRELSPADIE 178 (372)
T ss_pred --------CCc----HHHHH----HHHHHHHhCCEEeecHHH---hcCC--CCCCceEEeCCCCCCCccccCCCCHHHHH
Confidence 000 00111 124455789999988832 2222 2233334999999965311000
Q ss_pred -----CCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCc
Q 012436 263 -----LERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGN 337 (464)
Q Consensus 263 -----~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~ 337 (464)
....++.++++++||+.+.||++.+++|++.+.+.. |+++|+++|+|+..+. ...+.++++.+..++.++
T Consensus 179 ~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~----~~~~l~i~G~g~~~~~-~~~~~~~~~~~~~~~~~~ 253 (372)
T cd03792 179 YILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERV----PDPQLVLVGSGATDDP-EGWIVYEEVLEYAEGDPD 253 (372)
T ss_pred HHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhC----CCCEEEEEeCCCCCCc-hhHHHHHHHHHHhCCCCC
Confidence 111246689999999999999999999999987764 5899999999865321 222334555556677788
Q ss_pred EEEccCC--ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHH
Q 012436 338 VEFYKNL--LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYAD 415 (464)
Q Consensus 338 v~~~g~~--~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~ 415 (464)
|.+.|.. +++++..+|+.||++++||..|+||++++|||+||+|||+|+.++. .+++.+ +.+|+++++.+++++
T Consensus 254 v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~-~~~i~~---~~~g~~~~~~~~~a~ 329 (372)
T cd03792 254 IHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGI-PLQIED---GETGFLVDTVEEAAV 329 (372)
T ss_pred eEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCc-hhhccc---CCceEEeCCcHHHHH
Confidence 9999887 8899999999999999999999999999999999999999999988 678888 899999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHH
Q 012436 416 AIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRP 457 (464)
Q Consensus 416 ~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~ 457 (464)
+|.++++ |++.++++++++++.+ ++|+|+.+++++.++|++
T Consensus 330 ~i~~ll~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 330 RILYLLR-DPELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred HHHHHHc-CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 9999999 9999999999999998 899999999999999986
No 34
>PLN00142 sucrose synthase
Probab=100.00 E-value=4.4e-37 Score=307.22 Aligned_cols=391 Identities=17% Similarity=0.160 Sum_probs=258.0
Q ss_pred ceEEEecCCC----------CCCCCcchhhHHHH--------HHhhhhCCCCc--eEEEcccCCCC-chhHHHHHHhhcC
Q 012436 35 TSVAFFHPNT----------NDGGGGERVLWCAV--------KAIQEESPDLD--CIVYTGDHDAF-PDSLLARAVDRFG 93 (464)
Q Consensus 35 mkI~~~~~~~----------~~~GG~~~~~~~l~--------~~L~~~g~~~~--v~~~~~~~~~~-~~~~~~~~~~~~~ 93 (464)
+||+++++.. +..||...++.+++ +.|++.|++++ |.++|...... ...+.+... .
T Consensus 280 ~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e---~ 356 (815)
T PLN00142 280 FNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLE---K 356 (815)
T ss_pred HhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccCCcccCcce---e
Confidence 5677765433 22288888887655 67778897663 67888743111 111111111 1
Q ss_pred cccCCCceeeeeeccccc--ccccCcceehhhhch-hhhHHHHHHh-h--hcCCcEEEecccccccch--hhhccCceEE
Q 012436 94 VELLHPPKVVHLYRRKWI--EESTYPRFTMIGQSF-GSVYLSWEAL-C--KFTPLYYFDTSGYAFTYP--LARIFGCRVI 165 (464)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~l-~--~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v 165 (464)
+...++..+.+++.+.-. .....+++.. +.++ .+...+.+.+ . ..+||+||++...++... +++..|+|.+
T Consensus 357 v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l-~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v 435 (815)
T PLN00142 357 VSGTEHSHILRVPFRTEKGILRKWISRFDV-WPYLETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQC 435 (815)
T ss_pred ccCCCceEEEecCCCCCccccccccCHHHH-HHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEE
Confidence 111223356565554310 0001111111 1111 1112222222 2 236999998877665544 6779999999
Q ss_pred EEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHH-HHHHHHHhhcCCEEEEcCHHHHHHH-------H
Q 012436 166 CYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFF-SWMYGLVGSCADLAMVNSSWTQSHI-------E 237 (464)
Q Consensus 166 ~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ad~vi~~S~~~~~~~-------~ 237 (464)
.+.|.-.. ..+.. ...+ | ......+.... ...+..++..||.||+.|......+ .
T Consensus 436 ~T~HsL~k----~K~~~--~~~~----------~-~~~e~~y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~ 498 (815)
T PLN00142 436 TIAHALEK----TKYPD--SDIY----------W-KKFDDKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYE 498 (815)
T ss_pred EEcccchh----hhccc--cCCc----------c-cccchhhhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhh
Confidence 99993210 00000 0000 0 00000111110 1235677899999999997776422 1
Q ss_pred HHh------------CC---CCCeEEecCCCCCCCCccCCCC----------------------------CCCCCcEEEE
Q 012436 238 KLW------------GI---PDRIKRVYPPCDTSGLQVLPLE----------------------------RSTEYPAIIS 274 (464)
Q Consensus 238 ~~~------------~~---~~~i~~i~~~~d~~~~~~~~~~----------------------------~~~~~~~i~~ 274 (464)
.+. +. ..++.++++|+|...|.+.... ...++++|++
T Consensus 499 sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~ 578 (815)
T PLN00142 499 SHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFS 578 (815)
T ss_pred cccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEE
Confidence 110 11 4588999999998876532210 1234568999
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC------ccHHHHHHHHHHHHhcCCCCcEEEccCC----
Q 012436 275 VAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK------SDEERLQSLKDKSIELKVDGNVEFYKNL---- 344 (464)
Q Consensus 275 ~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~------~~~~~~~~l~~~~~~~~l~~~v~~~g~~---- 344 (464)
+||+.+.||++.+++|+.++.+.. ++++|+|+|++.+. +..+..+++.++++++++.++|.|+|..
T Consensus 579 VGRL~~~KGid~LIeA~a~l~~l~----~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~ 654 (815)
T PLN00142 579 MARLDRVKNLTGLVEWYGKNKRLR----ELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRV 654 (815)
T ss_pred EecCcccCCHHHHHHHHHHHHHhC----CCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcc
Confidence 999999999999999999886654 47999999987321 1122346688899999999999999854
Q ss_pred ChhHHHHHHh-cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHH-
Q 012436 345 LYRDLVKLLG-GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKI- 420 (464)
Q Consensus 345 ~~~~~~~~l~-~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l- 420 (464)
+.+++..+++ .+|++++||.+|+||++++|||+||+|||+|+.||. .|++.+ +.+|++++ |+++++++|.++
T Consensus 655 ~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~-~EIV~d---G~tG~LV~P~D~eaLA~aI~~lL 730 (815)
T PLN00142 655 RNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGP-AEIIVD---GVSGFHIDPYHGDEAANKIADFF 730 (815)
T ss_pred cHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCH-HHHhcC---CCcEEEeCCCCHHHHHHHHHHHH
Confidence 3467877777 479999999999999999999999999999999998 799999 99999986 999999998765
Q ss_pred ---HcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Q 012436 421 ---ISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAI 455 (464)
Q Consensus 421 ---~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~ 455 (464)
++ |++.+++++++|++.+ ++|||+.++++++++.
T Consensus 731 ekLl~-Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 731 EKCKE-DPSYWNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 46 9999999999999999 8999999999998865
No 35
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.4e-36 Score=291.57 Aligned_cols=343 Identities=17% Similarity=0.130 Sum_probs=251.5
Q ss_pred eEEEecCCCCC-CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 36 SVAFFHPNTND-GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 36 kI~~~~~~~~~-~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
||+++.+++++ .||+++++.+++++|.+.|+++++++..... .... .. ..+. .+........ ..
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~---~~--~~~~------~~~~~~~~~~--~~ 65 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEP--KGRD---EE--RNGH------RVIRAPSLLN--VA 65 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCC--cchh---hh--ccCc------eEEEeecccc--cc
Confidence 68888877766 5899999999999999999666655544321 1110 00 0011 2222211100 00
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (464)
..+. ........+ ++..+||+||.+........ .....++|.++++|....
T Consensus 66 ~~~~-------~~~~~~~~~-~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~------------------- 118 (357)
T cd03795 66 STPF-------SPSFFKQLK-KLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIV------------------- 118 (357)
T ss_pred cccc-------cHHHHHHHH-hcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcChhh-------------------
Confidence 0000 011111111 55779999997665543322 222358899999983221
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC------CCC
Q 012436 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------ERS 266 (464)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~------~~~ 266 (464)
.. ....+.+..+++..++.+|.++++|+...+.+...+....++.++|||+|.+.+..... ...
T Consensus 119 -------~~---~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~~~~~~~~~ 188 (357)
T cd03795 119 -------KQ---KLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDALEEAIWRRA 188 (357)
T ss_pred -------cc---chhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCcchhhhHhhcCC
Confidence 00 01223344556778899999999999999988776655678999999999887654322 123
Q ss_pred CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
.+.+.++|+|++.+.||++.++++++++. +++++++|+|+.. +.+++.+++++..++|.|+|++++
T Consensus 189 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~--------~~~l~i~G~g~~~------~~~~~~~~~~~~~~~V~~~g~v~~ 254 (357)
T cd03795 189 AGRPFFLFVGRLVYYKGLDVLLEAAAALP--------DAPLVIVGEGPLE------AELEALAAALGLLDRVRFLGRLDD 254 (357)
T ss_pred CCCcEEEEecccccccCHHHHHHHHHhcc--------CcEEEEEeCChhH------HHHHHHHHhcCCcceEEEcCCCCH
Confidence 46689999999999999999999999873 5899999998643 677888888888899999999999
Q ss_pred hHHHHHHhcCcEEEEcCC--CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 347 RDLVKLLGGAVVGIHSMI--DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
+++.++|+.||++++||. .|++|++++|||++|+|||+++.++..+.+..+ +.+|++++ |+++++++|.++++
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~---~~~g~~~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLH---GVTGLVVPPGDPAALAEAIRRLLE 331 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhhC---CCceEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999985 699999999999999999999999884333334 58898875 89999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-HccCHHHHH
Q 012436 423 MPETERLEMAAAARRRA-ARFSEQRFY 448 (464)
Q Consensus 423 ~~~~~~~~~~~~~~~~~-~~~s~~~~~ 448 (464)
|++.++++++++++.+ ++|||+.++
T Consensus 332 -~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 332 -DPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred -CHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 9999999999999999 899999763
No 36
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=2.4e-36 Score=290.76 Aligned_cols=348 Identities=17% Similarity=0.124 Sum_probs=251.0
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||+|++++.+..||.++++.+++++|.+.||++.+........ ..... ... . ......
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~--~~~~~-------~~~---~-~~~~~~--------- 58 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYP--SLLYG-------GEQ---E-VVRVIV--------- 58 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccC--cccCC-------Ccc---c-ceeeee---------
Confidence 7999999887678999999999999999996666555443221 00000 000 0 000000
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch----h----hhccCceEEEEeeCCcchhhhhhcccccccc
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP----L----ARIFGCRVICYTHYPTISLDMISRVREGSSM 187 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~----~----~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~ 187 (464)
...........+.+++.+||+||.+...+...+ . .+..++|+|+++|....
T Consensus 59 -------~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-------------- 117 (366)
T cd03822 59 -------LDNPLDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLL-------------- 117 (366)
T ss_pred -------cCCchhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCc--------------
Confidence 000112334556678889999996553222111 1 12389999999994310
Q ss_pred cCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcC-HHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC---
Q 012436 188 YNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNS-SWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL--- 263 (464)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S-~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~--- 263 (464)
... .....+..+..++.+|.++++| +..++.+...+ ..++.++|||++...+.....
T Consensus 118 ----------~~~-------~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~ 178 (366)
T cd03822 118 ----------HEP-------RPGDRALLRLLLRRADAVIVMSSELLRALLLRAY--PEKIAVIPHGVPDPPAEPPESLKA 178 (366)
T ss_pred ----------ccc-------chhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcC--CCcEEEeCCCCcCcccCCchhhHh
Confidence 000 0011234466679999999996 33344433321 479999999998776653211
Q ss_pred -CCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc
Q 012436 264 -ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (464)
Q Consensus 264 -~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 342 (464)
....+.++++|+|++.+.||++.+++|++.+.++. |+++|+++|++....... .....++++++++.++|.++|
T Consensus 179 ~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~----~~~~l~i~G~~~~~~~~~-~~~~~~~i~~~~~~~~v~~~~ 253 (366)
T cd03822 179 LGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKH----PDVRLLVAGETHPDLERY-RGEAYALAERLGLADRVIFIN 253 (366)
T ss_pred hcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhC----CCeEEEEeccCccchhhh-hhhhHhHHHhcCCCCcEEEec
Confidence 12345689999999999999999999999998875 689999999876432111 111113477888899999998
Q ss_pred C-CChhHHHHHHhcCcEEEEcCCCC--CCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHH
Q 012436 343 N-LLYRDLVKLLGGAVVGIHSMIDE--HFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAI 417 (464)
Q Consensus 343 ~-~~~~~~~~~l~~ad~~v~ps~~e--~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i 417 (464)
. ++.+++.++|+.||++++||..| ++|++++|||++|+|||+++.++ .+++ .+ +.+|++++ |+++++++|
T Consensus 254 ~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i-~~---~~~g~~~~~~d~~~~~~~l 328 (366)
T cd03822 254 RYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEV-LD---GGTGLLVPPGDPAALAEAI 328 (366)
T ss_pred CcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhee-ee---CCCcEEEcCCCHHHHHHHH
Confidence 7 89999999999999999999999 99999999999999999999988 3454 45 57888875 899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 418 VKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 418 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
.++++ |++.+.++++++++.+++|||+.+++++.++|+
T Consensus 329 ~~l~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 366 (366)
T cd03822 329 RRLLA-DPELAQALRARAREYARAMSWERVAERYLRLLA 366 (366)
T ss_pred HHHHc-ChHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhC
Confidence 99999 999999999999999966999999999998873
No 37
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=2.7e-36 Score=287.67 Aligned_cols=344 Identities=20% Similarity=0.225 Sum_probs=253.5
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||+++.+.....||.++++..++++|.+.|+++.++...... .. ......++.+..+......
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~----~~---------~~~~~~~~~~~~~~~~~~~---- 63 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGE----PP---------FYELDPKIKVIDLGDKRDS---- 63 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCC----CC---------ccccCCccceeeccccccc----
Confidence 689998888767799999999999999999555544433221 00 0111111222222211100
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccC-ceEEEEeeCCcchhhhhhcccccccccCCCccc
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFG-CRVICYTHYPTISLDMISRVREGSSMYNNNASI 194 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~-~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~ 194 (464)
.....+.......+.+++.+||+|+.+......+......+ +|++.+.|....
T Consensus 64 -----~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------- 117 (348)
T cd03820 64 -----KLLARFKKLRRLRKLLKNNKPDVVISFLTSLLTFLASLGLKIVKLIVSEHNSPD--------------------- 117 (348)
T ss_pred -----chhccccchHHHHHhhcccCCCEEEEcCchHHHHHHHHhhccccEEEecCCCcc---------------------
Confidence 01111233455666788899999997776522211222344 499998884321
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEE
Q 012436 195 AQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIIS 274 (464)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~ 274 (464)
...... .....++..++.+|.+++.|+..+..... ....++.++|||++...+... ...+.+.+++
T Consensus 118 ---~~~~~~------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~--~~~~~~~vi~~~~~~~~~~~~---~~~~~~~i~~ 183 (348)
T cd03820 118 ---AYKKRL------RRLLLRRLLYRRADAVVVLTEEDRALYYK--KFNKNVVVIPNPLPFPPEEPS---SDLKSKRILA 183 (348)
T ss_pred ---chhhhh------HHHHHHHHHHhcCCEEEEeCHHHHHHhhc--cCCCCeEEecCCcChhhcccc---CCCCCcEEEE
Confidence 000000 00114577789999999999999832222 237889999999998766532 2355689999
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh
Q 012436 275 VAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG 354 (464)
Q Consensus 275 ~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~ 354 (464)
+|++.+.||++.++++++.+.+.. |+++|+++|.++.. +.+++.++++++.++|.+.|.. +++.++|+
T Consensus 184 ~g~~~~~K~~~~l~~~~~~l~~~~----~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~ 251 (348)
T cd03820 184 VGRLVPQKGFDLLIEAWAKIAKKH----PDWKLRIVGDGPER------EALEALIKELGLEDRVILLGFT--KNIEEYYA 251 (348)
T ss_pred EEeeccccCHHHHHHHHHHHHhcC----CCeEEEEEeCCCCH------HHHHHHHHHcCCCCeEEEcCCc--chHHHHHH
Confidence 999999999999999999998754 69999999988653 5677778888988999999994 89999999
Q ss_pred cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHHH
Q 012436 355 GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEMA 432 (464)
Q Consensus 355 ~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~ 432 (464)
+||++++||..|++|++++|||++|+|||+++.++..++++.+ +.+|++++ |+++++++|.++++ |++.+++++
T Consensus 252 ~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~i~~ll~-~~~~~~~~~ 327 (348)
T cd03820 252 KASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIED---GVNGLLVPNGDVEALAEALLRLME-DEELRKRMG 327 (348)
T ss_pred hCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHhhhcc---CcceEEeCCCCHHHHHHHHHHHHc-CHHHHHHHH
Confidence 9999999999999999999999999999999976654777777 66998886 88999999999999 999999999
Q ss_pred HHHHHHHHccCHHHHHHHHH
Q 012436 433 AAARRRAARFSEQRFYEDFK 452 (464)
Q Consensus 433 ~~~~~~~~~~s~~~~~~~~~ 452 (464)
+++++.+++|+|++++++|.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 328 ANARESAERFSIENIIKQWE 347 (348)
T ss_pred HHHHHHHHHhCHHHHHHHhc
Confidence 99977779999999999875
No 38
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=2.1e-36 Score=287.85 Aligned_cols=327 Identities=21% Similarity=0.208 Sum_probs=239.8
Q ss_pred ceEEEecCCCC-----CCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccc
Q 012436 35 TSVAFFHPNTN-----DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRK 109 (464)
Q Consensus 35 mkI~~~~~~~~-----~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (464)
|||+++.+++. ..||+++++.+++++|.+.|| +|.+++...+...... .. .....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~--~V~v~~~~~~~~~~~~---------~~---------~~~~~ 60 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGH--EVTLFASGDSKTAAPL---------VP---------VVPEP 60 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCc--eEEEEecCCCCcccce---------ee---------ccCCC
Confidence 89999988752 348999999999999999995 5555554321111000 00 00000
Q ss_pred ccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEeeCCcchhhhhhcccccccccC
Q 012436 110 WIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (464)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~ 189 (464)
..... ...............+.+++.+||+||++......+ .++..++|+|++.|+...
T Consensus 61 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~~~v~~~h~~~~---------------- 119 (335)
T cd03802 61 LRLDA----PGRDRAEAEALALAERALAAGDFDIVHNHSLHLPLP-FARPLPVPVVTTLHGPPD---------------- 119 (335)
T ss_pred ccccc----chhhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh-hhcccCCCEEEEecCCCC----------------
Confidence 00000 000011123344555667888999999887766554 666889999999994431
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCC
Q 012436 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEY 269 (464)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~ 269 (464)
..... ........+.++++|+..++.+... .++.++|||+|.+.+.. ...++
T Consensus 120 --------~~~~~------------~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~vi~ngvd~~~~~~----~~~~~ 171 (335)
T cd03802 120 --------PELLK------------LYYAARPDVPFVSISDAQRRPWPPL----PWVATVHNGIDLDDYPF----RGPKG 171 (335)
T ss_pred --------cccch------------HHHhhCcCCeEEEecHHHHhhcccc----cccEEecCCcChhhCCC----CCCCC
Confidence 00000 1223477789999999998877543 68899999999987764 22345
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcC-CCCcEEEccCCChhH
Q 012436 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELK-VDGNVEFYKNLLYRD 348 (464)
Q Consensus 270 ~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~~~~~ 348 (464)
..++|+|++.+.||++.+++++++. +++++++|.++.. +.+.....+.. +.++|.|+|++++++
T Consensus 172 ~~i~~~Gr~~~~Kg~~~li~~~~~~---------~~~l~i~G~~~~~------~~~~~~~~~~~~~~~~v~~~G~~~~~~ 236 (335)
T cd03802 172 DYLLFLGRISPEKGPHLAIRAARRA---------GIPLKLAGPVSDP------DYFYREIAPELLDGPDIEYLGEVGGAE 236 (335)
T ss_pred CEEEEEEeeccccCHHHHHHHHHhc---------CCeEEEEeCCCCH------HHHHHHHHHhcccCCcEEEeCCCCHHH
Confidence 7899999999999999999987643 8999999998643 33333333332 457999999999999
Q ss_pred HHHHHhcCcEEEEcCC-CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHHH
Q 012436 349 LVKLLGGAVVGIHSMI-DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETE 427 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~ 427 (464)
+.++|+.+|++++||. .|++|++++|||+||+|||+++.+|. .|++.+ +.+|++++++++++++|.++.+ .+
T Consensus 237 ~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~-~e~i~~---~~~g~l~~~~~~l~~~l~~l~~-~~-- 309 (335)
T cd03802 237 KAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAV-PEVVED---GVTGFLVDSVEELAAAVARADR-LD-- 309 (335)
T ss_pred HHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCc-hhheeC---CCcEEEeCCHHHHHHHHHHHhc-cH--
Confidence 9999999999999996 69999999999999999999999998 788888 7899999999999999999876 43
Q ss_pred HHHHHHHHHHHH-HccCHHHHHHHHHHHHH
Q 012436 428 RLEMAAAARRRA-ARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 428 ~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~ 456 (464)
.+++++.+ ++|||+.+++++.++|+
T Consensus 310 ----~~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 310 ----RAACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred ----HHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 24566667 99999999999999874
No 39
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=3.8e-36 Score=288.51 Aligned_cols=332 Identities=21% Similarity=0.208 Sum_probs=249.0
Q ss_pred CCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccccCcceeh
Q 012436 42 PNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTM 121 (464)
Q Consensus 42 ~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (464)
+++.. ||+++++.+++++|.+.| ++|.+++... ...... ...++ +++..+... . ..
T Consensus 5 ~~~~~-gG~e~~~~~l~~~L~~~g--~~v~v~~~~~-----~~~~~~-~~~~~------~~~~~~~~~---~---~~--- 60 (355)
T cd03819 5 PALES-GGVERGTLELARALVERG--HRSLVASAGG-----RLVAEL-EAEGS------RHIKLPFIS---K---NP--- 60 (355)
T ss_pred hhhcc-CcHHHHHHHHHHHHHHcC--CEEEEEcCCC-----chHHHH-HhcCC------eEEEccccc---c---ch---
Confidence 44444 699999999999999999 5555555432 111111 11122 222221110 0 00
Q ss_pred hhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchh
Q 012436 122 IGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNW 199 (464)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (464)
...+.....+.+.+++.+||+||.++....... .++..++|+++++|....
T Consensus 61 -~~~~~~~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-------------------------- 113 (355)
T cd03819 61 -LRILLNVARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYS-------------------------- 113 (355)
T ss_pred -hhhHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchh--------------------------
Confidence 111223445566788899999998775444332 345678999999993210
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCC------------CC
Q 012436 200 LSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE------------RS 266 (464)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~------------~~ 266 (464)
... .++..++.+|.++++|+..++.+.+.++. ..++.++|||+|.+.+...... ..
T Consensus 114 ~~~-----------~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (355)
T cd03819 114 VNF-----------RYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLP 182 (355)
T ss_pred hHH-----------HHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCC
Confidence 000 12344578999999999999999877766 5689999999998877543221 13
Q ss_pred CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
++.++++|+|++.+.||++.+++++..+++.. ++++++++|.++.. ..+.+.+.+.++++++.++|.+.|+.
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~----~~~~l~ivG~~~~~--~~~~~~~~~~~~~~~~~~~v~~~g~~-- 254 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDD----PDVHLLIVGDAQGR--RFYYAELLELIKRLGLQDRVTFVGHC-- 254 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcC----CCeEEEEEECCccc--chHHHHHHHHHHHcCCcceEEEcCCc--
Confidence 56688999999999999999999999998864 58999999998653 24456677788888888899999995
Q ss_pred hHHHHHHhcCcEEEEcC-CCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcC
Q 012436 347 RDLVKLLGGAVVGIHSM-IDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISM 423 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps-~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~ 423 (464)
+++.++|+.||++++|| ..|++|++++|||++|+|||+++.++. .+++.+ +.+|++++ |+++++++|..++..
T Consensus 255 ~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~-~e~i~~---~~~g~~~~~~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 255 SDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGA-RETVRP---GETGLLVPPGDAEALAQALDQILSL 330 (355)
T ss_pred ccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCc-HHHHhC---CCceEEeCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999 799999999999999999999999888 788888 77998875 999999999655543
Q ss_pred CHHHHHHHHHHHHHHH-HccCHHHH
Q 012436 424 PETERLEMAAAARRRA-ARFSEQRF 447 (464)
Q Consensus 424 ~~~~~~~~~~~~~~~~-~~~s~~~~ 447 (464)
++++++++++++++.+ ++|+|+.+
T Consensus 331 ~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 331 LPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhccC
Confidence 8999999999999999 99999853
No 40
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=6.7e-36 Score=288.13 Aligned_cols=360 Identities=18% Similarity=0.179 Sum_probs=254.6
Q ss_pred eEEEecCCCC-CCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 36 SVAFFHPNTN-DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 36 kI~~~~~~~~-~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
||+++.+.++ ..||+++++.+++++|.+.||++.+++..... ... ..... .. ..........
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~--~~~~~---~~------~~~~~~~~~~---- 63 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGG--DPL--LVALN---GV------PVKLFSINVA---- 63 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCC--ccc--hhhcc---Cc------eeeecccchh----
Confidence 6888888775 44899999999999999999655554433221 111 00000 00 0000000000
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccc-h---hhhccCceEEEEeeCCcchhhhhhcccccccccCC
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTY-P---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNN 190 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~-~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~ 190 (464)
.........+.............++|+|+.+..+.... . .++..++|++++.|.......
T Consensus 64 --~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------- 127 (375)
T cd03821 64 --YGLNLARYLFPPSLLAWLRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWA-------------- 127 (375)
T ss_pred --hhhhhhhhccChhHHHHHHHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccc--------------
Confidence 00000000111112222334456899998765433221 1 444678999999994321000
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC-------
Q 012436 191 NASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------- 263 (464)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~------- 263 (464)
.......... .....++...+.++.+++.|+......... ....++.++|||+|.+.+...+.
T Consensus 128 -------~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 197 (375)
T cd03821 128 -------LPHKALKKRL--AWFLFERRLLQAAAAVHATSEQEAAEIRRL-GLKAPIAVIPNGVDIPPFAALPSRGRRRKF 197 (375)
T ss_pred -------cccchhhhHH--HHHHHHHHHHhcCCEEEECCHHHHHHHHhh-CCcccEEEcCCCcChhccCcchhhhhhhhc
Confidence 0000111111 111234666789999999998877777654 33678999999999887764321
Q ss_pred CCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 012436 264 ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (464)
Q Consensus 264 ~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 343 (464)
....+.++++|+|++.+.||++.+++++..+.++. |+++++++|.+... +...++..++++++.++|.++|+
T Consensus 198 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~----~~~~l~i~G~~~~~----~~~~~~~~~~~~~~~~~v~~~g~ 269 (375)
T cd03821 198 PILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERF----PDWHLVIAGPDEGG----YRAELKQIAAALGLEDRVTFTGM 269 (375)
T ss_pred cCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhc----CCeEEEEECCCCcc----hHHHHHHHHHhcCccceEEEcCC
Confidence 23456789999999999999999999999998875 68999999987543 33556666688888899999999
Q ss_pred CChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 344 LLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 344 ~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
++++++.++|+.||++++||..|++|++++|||++|+|||+++.++. .+++.+ ..|++.+ +.++++++|.++++
T Consensus 270 ~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~i~~l~~ 344 (375)
T cd03821 270 LYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPW-QELIEY----GCGWVVDDDVDALAAALRRALE 344 (375)
T ss_pred CChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCH-HHHhhc----CceEEeCCChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888 677765 6788776 77999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-HccCHHHHHHHHH
Q 012436 423 MPETERLEMAAAARRRA-ARFSEQRFYEDFK 452 (464)
Q Consensus 423 ~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~ 452 (464)
+++.++++++++++.+ ++|+|+.+++++.
T Consensus 345 -~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 345 -LPQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred -CHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 9999999999999997 9999999999875
No 41
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.3e-35 Score=288.10 Aligned_cols=376 Identities=15% Similarity=0.042 Sum_probs=248.6
Q ss_pred EEEecCCCCCC--CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccc-cc-
Q 012436 37 VAFFHPNTNDG--GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKW-IE- 112 (464)
Q Consensus 37 I~~~~~~~~~~--GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 112 (464)
|+|+++..+.. +|....+++++++|++. |++++++++.+.. .....+..... ...+.+.++..+.. +.
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~--~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~ 72 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPE--DWQYAAALRPL-----CEEVCVVPLDPRVARLRS 72 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcc--cHHHHHHHHHH-----hheeEEeecCcHHHHHHH
Confidence 56776555433 56788889999999886 6777776664321 11111111110 11112222211110 00
Q ss_pred ----cccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEeeCCcchhhhhhccccccccc
Q 012436 113 ----ESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMY 188 (464)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~ 188 (464)
....|..............+.+++++.++|+||+++.....+...+..++|.|++.|. +....|.. |
T Consensus 73 ~~~l~~~~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~p~i~~~~d------~~~~~~~~---~ 143 (397)
T TIGR03087 73 LLGLLTGEPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYVTPHVRGVPRIVDFVD------VDSDKWLQ---Y 143 (397)
T ss_pred HhhhcCCCCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceeccccccCCCeEeehhh------HHHHHHHH---H
Confidence 0000110111111222334455677889999997765333322223568999998882 21111100 0
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCCC--
Q 012436 189 NNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLER-- 265 (464)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~~-- 265 (464)
... .........+...+.+..+++.+++.+|.++++|+..++.+.+.++. ..++.++|||+|.+.|.+.....
T Consensus 144 ~~~----~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~~~ 219 (397)
T TIGR03087 144 ART----KRWPLRWIYRREGRLLLAYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYPNP 219 (397)
T ss_pred Hhc----cCcchhHHHHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccccCC
Confidence 000 00001111111224455678899999999999999999999877543 56899999999998776432211
Q ss_pred -CCCCcEEEEEeccCCCCChHHHHH----HHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE
Q 012436 266 -STEYPAIISVAQFRPEKAHPLQLE----AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF 340 (464)
Q Consensus 266 -~~~~~~i~~~G~~~~~K~~~~ll~----a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~ 340 (464)
..+..+++|+|++.+.||++.+++ ++..+.+.. |+++|+|+|+++. +++++ ++..++|+|
T Consensus 220 ~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~----p~~~l~ivG~g~~-------~~~~~----l~~~~~V~~ 284 (397)
T TIGR03087 220 YPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARR----PAAEFYIVGAKPS-------PAVRA----LAALPGVTV 284 (397)
T ss_pred CCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHC----CCcEEEEECCCCh-------HHHHH----hccCCCeEE
Confidence 134578999999999999999885 444555544 6999999999863 23333 333568999
Q ss_pred ccCCChhHHHHHHhcCcEEEEcCC-CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHH
Q 012436 341 YKNLLYRDLVKLLGGAVVGIHSMI-DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIV 418 (464)
Q Consensus 341 ~g~~~~~~~~~~l~~ad~~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~ 418 (464)
+|+++ ++..+|+.||++++||. .||+|++++|||+||+|||+|+.++ +.+... +++|++++ |+++++++|.
T Consensus 285 ~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~--~~i~~~---~~~g~lv~~~~~~la~ai~ 357 (397)
T TIGR03087 285 TGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAA--EGIDAL---PGAELLVAADPADFAAAIL 357 (397)
T ss_pred eeecC--CHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCccc--cccccc---CCcceEeCCCHHHHHHHHH
Confidence 99994 78999999999999996 6999999999999999999999753 233333 46787775 9999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHH
Q 012436 419 KIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 419 ~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~ 456 (464)
++++ |++.++++++++++.+ ++|||+..++++.++++
T Consensus 358 ~ll~-~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 358 ALLA-NPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHc-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 9999 9999999999999999 89999999999998875
No 42
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=4.4e-36 Score=291.81 Aligned_cols=368 Identities=14% Similarity=0.146 Sum_probs=247.0
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIE 112 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (464)
+++||++++... +|.+..+.+++++|++.||+|+++...... .. .......+ +.++.+..+.. .
T Consensus 2 ~~~~~~~~~~~~---~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~---~~---~~~~~~~~------v~~~~~~~~~~-~ 65 (415)
T cd03816 2 KRKRVCVLVLGD---IGRSPRMQYHALSLAKHGWKVDLVGYLETP---PH---DEILSNPN------ITIHPLPPPPQ-R 65 (415)
T ss_pred CccEEEEEEecc---cCCCHHHHHHHHHHHhcCceEEEEEecCCC---CC---HHHhcCCC------EEEEECCCCcc-c
Confidence 346777776543 477777789999999999666655443211 11 11011112 24444433210 0
Q ss_pred cccCcce-ehhhhchhhhHH-HHHHhhhcCCcEEEecccccccc---h--hhhccCceEEEEeeCCcchhhhhhcccccc
Q 012436 113 ESTYPRF-TMIGQSFGSVYL-SWEALCKFTPLYYFDTSGYAFTY---P--LARIFGCRVICYTHYPTISLDMISRVREGS 185 (464)
Q Consensus 113 ~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~Dvv~~~~~~~~~~---~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~ 185 (464)
....++. ......+..... .+.+++..+||+||.+....... . +++..++|+|+++|..... ....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~--~~~~----- 138 (415)
T cd03816 66 LNKLPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYT--ILAL----- 138 (415)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHH--HHhc-----
Confidence 0000110 000111111112 22235667899999766433211 1 3446799999999932100 0000
Q ss_pred cccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCC-
Q 012436 186 SMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE- 264 (464)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~- 264 (464)
... ......+.+.++++.+++.+|.++++|+.+++.+.+.....+++.+||||.+ ..+.+.+..
T Consensus 139 ------------~~~--~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~~l~~~~~~~~ki~vI~Ng~~-~~f~p~~~~~ 203 (415)
T cd03816 139 ------------KLG--ENHPLVRLAKWYEKLFGRLADYNLCVTKAMKEDLQQFNNWKIRATVLYDRPP-EQFRPLPLEE 203 (415)
T ss_pred ------------ccC--CCCHHHHHHHHHHHHHhhcCCEeeecCHHHHHHHHhhhccCCCeeecCCCCH-HHceeCcHHH
Confidence 000 0111234566778888999999999999999999874333789999999843 333321100
Q ss_pred ------------------------CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcC--CCCCcEEEEEcCCCCCcc
Q 012436 265 ------------------------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDA--DLPRPRLQFVGSCRNKSD 318 (464)
Q Consensus 265 ------------------------~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~--~~p~~~l~i~G~~~~~~~ 318 (464)
..++..+++++|++.+.||++.+++|+..+.+.... ..|+++|+|+|+|+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~-- 281 (415)
T cd03816 204 KHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLK-- 281 (415)
T ss_pred HHHHHHhccccccccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccH--
Confidence 013345788899999999999999999998763210 1157999999999753
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcC---CCCCCChHHHHHHHhCCcEEEeCCCCCcccee
Q 012436 319 EERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM---IDEHFGISVVEYMAAGAIPIAHNSAGPKMDIV 395 (464)
Q Consensus 319 ~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps---~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v 395 (464)
+++++.++++++.+.+.+.|+++.+++.++|+.||+++.|+ ..+++|++++||||||+|||+++.++. .|++
T Consensus 282 ----~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~-~eiv 356 (415)
T cd03816 282 ----EKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCI-DELV 356 (415)
T ss_pred ----HHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCH-HHHh
Confidence 78899999999875444567899999999999999998753 347899999999999999999999887 7999
Q ss_pred cccCCccceeecCCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHccCHHHHHHH
Q 012436 396 LEEDGQQTGFLAQNAEEYADAIVKIISMP---ETERLEMAAAARRRAARFSEQRFYED 450 (464)
Q Consensus 396 ~~~~~~~~g~~~~~~~~la~~i~~l~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~ 450 (464)
.+ +.+|++++|+++++++|.++++ | ++.+++|++++++.. +++|++...+
T Consensus 357 ~~---~~~G~lv~d~~~la~~i~~ll~-~~~~~~~~~~m~~~~~~~~-~~~~~~~~~~ 409 (415)
T cd03816 357 KH---GENGLVFGDSEELAEQLIDLLS-NFPNRGKLNSLKKGAQEES-ELRWDENWDR 409 (415)
T ss_pred cC---CCCEEEECCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhh-hcCHHHHHHH
Confidence 98 8999999999999999999999 8 899999999999876 5566555444
No 43
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=2.5e-36 Score=289.09 Aligned_cols=348 Identities=24% Similarity=0.296 Sum_probs=240.4
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||+++|+++...||+|+++.++++.|.+ +++.+...+........ .. . .+ ............
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~----~~v~~~~~~~~~~~~~~-~~--~--~~------~~~~~~~~~~~~--- 62 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPD----ADIFTLVDDPDKLPRLL-RL--K--KI------RTSFIQKLPFAR--- 62 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCC----CCEEEEeecCCccchhh-cC--C--ce------eechhhhchhhH---
Confidence 7999999998789999999999998854 44444433221111100 00 0 00 000000000000
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccc
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIA 195 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~ 195 (464)
..+ .........+.+.+...++|+|++++..... .+.+..++|.+.++|.|. +..++..+.|......
T Consensus 63 -~~~---~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~~~~~~~~~h~~~------~~~~~~~~~~~~~~~~- 130 (351)
T cd03804 63 -RRY---RKYLPLMPLAIEQFDLSGYDLVISSSHAVAK-GVITRPDQLHICYCHTPM------RYAWDLYHDYLKESGL- 130 (351)
T ss_pred -hhH---hhhCchhhHHHHhccccCCCEEEEcCcHHhc-cccCCCCCcEEEEeCCch------HHHhcCchHhhhhccc-
Confidence 000 1111223334455667789999876553322 233567899999999654 1222222222211111
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEE
Q 012436 196 QSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISV 275 (464)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~ 275 (464)
............+...++..++++|.++++|+.+++.+.+.++ .+..+++||+|.+.+...+ .....++|+
T Consensus 131 ---~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~--~~~~vi~~~~d~~~~~~~~----~~~~~il~~ 201 (351)
T cd03804 131 ---GKRLALRLLLHYLRIWDRRSAARVDYFIANSRFVARRIKKYYG--RDATVIYPPVDTDRFTPAE----EKEDYYLSV 201 (351)
T ss_pred ---chhhHHHHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHHHHhC--CCcEEECCCCCHhhcCcCC----CCCCEEEEE
Confidence 1111113344455566778889999999999999999988774 4567899999988775322 234679999
Q ss_pred eccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc
Q 012436 276 AQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (464)
Q Consensus 276 G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ 355 (464)
|++.+.||++.+++|++.+ | ++|+++|+|+.. +++++ +..++|.|+|+++++++.++|++
T Consensus 202 G~~~~~K~~~~li~a~~~~--------~-~~l~ivG~g~~~------~~l~~-----~~~~~V~~~g~~~~~~~~~~~~~ 261 (351)
T cd03804 202 GRLVPYKRIDLAIEAFNKL--------G-KRLVVIGDGPEL------DRLRA-----KAGPNVTFLGRVSDEELRDLYAR 261 (351)
T ss_pred EcCccccChHHHHHHHHHC--------C-CcEEEEECChhH------HHHHh-----hcCCCEEEecCCCHHHHHHHHHh
Confidence 9999999999999999876 3 899999998642 34443 34679999999999999999999
Q ss_pred CcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHHHH
Q 012436 356 AVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEMAA 433 (464)
Q Consensus 356 ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~ 433 (464)
||++++||. |++|++++|||+||+|||+++.++. .+++.+ +.+|++++ |+++++++|.++++ |++ .+.+
T Consensus 262 ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~~~~-~e~i~~---~~~G~~~~~~~~~~la~~i~~l~~-~~~---~~~~ 332 (351)
T cd03804 262 ARAFLFPAE-EDFGIVPVEAMASGTPVIAYGKGGA-LETVID---GVTGILFEEQTVESLAAAVERFEK-NED---FDPQ 332 (351)
T ss_pred CCEEEECCc-CCCCchHHHHHHcCCCEEEeCCCCC-cceeeC---CCCEEEeCCCCHHHHHHHHHHHHh-Ccc---cCHH
Confidence 999999999 9999999999999999999999988 788888 88999885 89999999999998 874 2334
Q ss_pred HHHHHHHccCHHHHHHHH
Q 012436 434 AARRRAARFSEQRFYEDF 451 (464)
Q Consensus 434 ~~~~~~~~~s~~~~~~~~ 451 (464)
+.++.+++|+|+++.+++
T Consensus 333 ~~~~~~~~~~~~~~~~~~ 350 (351)
T cd03804 333 AIRAHAERFSESRFREKI 350 (351)
T ss_pred HHHHHHHhcCHHHHHHHh
Confidence 445555779999998775
No 44
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=4.7e-36 Score=288.24 Aligned_cols=361 Identities=23% Similarity=0.250 Sum_probs=271.9
Q ss_pred eEEEecCCCCCC-CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 36 SVAFFHPNTNDG-GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 36 kI~~~~~~~~~~-GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
||+++++..++. ||+..++..++++|.+.|+++. +++........... .. .. ..... .
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~--i~~~~~~~~~~~~~--~~---~~------~~~~~--------~ 59 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVT--VLTPGDGGLPDEEE--VG---GI------VVVRP--------P 59 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEE--EEecCCCCCCceee--ec---Cc------ceecC--------C
Confidence 688888877766 8999999999999999995554 44443211111000 00 00 00000 0
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (464)
...................+.+++.+||+|+.+........ .++..++|+++++|.......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~---------------- 123 (374)
T cd03801 60 PLLRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP---------------- 123 (374)
T ss_pred cccccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc----------------
Confidence 00011111111223344556677889999997776555443 455789999999994331000
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCC-CCeEEecCCCCCCCCcc------CCCCC
Q 012436 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIP-DRIKRVYPPCDTSGLQV------LPLER 265 (464)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~-~~i~~i~~~~d~~~~~~------~~~~~ 265 (464)
.. ............++..++.+|.+++.|+...+.+.+.++.. .++.++|||++...+.. .....
T Consensus 124 -------~~-~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 195 (374)
T cd03801 124 -------GN-ELGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAPRAARRRLGI 195 (374)
T ss_pred -------cc-chhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccchHHHhhcCC
Confidence 00 01222334445567778999999999999999999987653 68999999999887643 12333
Q ss_pred CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 266 STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 266 ~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
..+.++++|+|++...||++.+++++..+.+.. |+++++++|.++ ..+.+++.+++++..++|.+.|+++
T Consensus 196 ~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~----~~~~l~i~G~~~------~~~~~~~~~~~~~~~~~v~~~g~~~ 265 (374)
T cd03801 196 PEDEPVILFVGRLVPRKGVDLLLEALAKLRKEY----PDVRLVIVGDGP------LREELEALAAELGLGDRVTFLGFVP 265 (374)
T ss_pred cCCCeEEEEecchhhhcCHHHHHHHHHHHhhhc----CCeEEEEEeCcH------HHHHHHHHHHHhCCCcceEEEeccC
Confidence 456689999999999999999999999998776 589999999764 3467777778888889999999999
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcC
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISM 423 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~ 423 (464)
++++.++|+.||++++|+..|++|++++|||++|+|||+++.++. .+++.+ +.+|++++ |+++++++|.++++
T Consensus 266 ~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~-~~~~~~---~~~g~~~~~~~~~~l~~~i~~~~~- 340 (374)
T cd03801 266 DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGI-PEVVED---GETGLLVPPGDPEALAEAILRLLD- 340 (374)
T ss_pred hhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCCh-hHHhcC---CcceEEeCCCCHHHHHHHHHHHHc-
Confidence 999999999999999999999999999999999999999999888 788887 78998886 68999999999999
Q ss_pred CHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHH
Q 012436 424 PETERLEMAAAARRRA-ARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 424 ~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~ 456 (464)
|++.++++++++++.+ +.|+|+.+++++.++++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 341 DPELRRRLGEAARERVAERFSWDRVAARTEEVYY 374 (374)
T ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhC
Confidence 9999999999999777 99999999999998763
No 45
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=1.2e-35 Score=286.45 Aligned_cols=360 Identities=18% Similarity=0.232 Sum_probs=257.8
Q ss_pred eEEEecCCCC-CCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 36 SVAFFHPNTN-DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 36 kI~~~~~~~~-~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
||++++.+++ ..||++..+..++++|.+.||++. +++......... .... .+ ........
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~--v~~~~~~~~~~~--~~~~---~~------~~~~~~~~------ 61 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVY--VVAPSYPGAPEE--EEVV---VV------RPFRVPTF------ 61 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEE--EEeCCCCCCCcc--cccc---cc------cccccccc------
Confidence 6888876654 448999999999999999995555 444332111000 0000 00 00000000
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhcccccccccCCC
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~ 191 (464)
....... .........+.+++.+||+||.+..+..... +++..++|++.+.|.... +.....
T Consensus 62 ~~~~~~~---~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~---------- 126 (374)
T cd03817 62 KYPDFRL---PLPIPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYE--DYTHYV---------- 126 (374)
T ss_pred hhhhhhc---cccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHH--HHHHHH----------
Confidence 0001101 1112223344577889999997765443222 455789999999994321 110000
Q ss_pred cccccchhhhHHHHHHHHHHH-HHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC-------
Q 012436 192 ASIAQSNWLSQCKIVYYTFFS-WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------- 263 (464)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~------- 263 (464)
............ ..++..++.+|.++++|+..++.+.+. +...++.++|+|+|...+...+.
T Consensus 127 ---------~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 196 (374)
T cd03817 127 ---------PLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIADLLREY-GVKRPIEVIPTGIDLDRFEPVDGDDERRKL 196 (374)
T ss_pred ---------hcccchhHHHHHHHHHHHHhhhCCEEEeccHHHHHHHHhc-CCCCceEEcCCccchhccCccchhHHHHhc
Confidence 000001111111 566788899999999999999998775 44667899999999887664332
Q ss_pred CCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 012436 264 ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (464)
Q Consensus 264 ~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 343 (464)
...+++++++++|++.+.||++.++++++.+.++. ++++++++|+++. .+.+++.++++++.++|.++|+
T Consensus 197 ~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~----~~~~l~i~G~~~~------~~~~~~~~~~~~~~~~v~~~g~ 266 (374)
T cd03817 197 GIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEE----PDVKLVIVGDGPE------REELEELARELGLADRVIFTGF 266 (374)
T ss_pred CCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhC----CCeEEEEEeCCch------HHHHHHHHHHcCCCCcEEEecc
Confidence 12356689999999999999999999999998774 5899999998863 3678888888888899999999
Q ss_pred CChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 344 LLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 344 ~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
++++++.++|+.||++++||..|++|++++|||++|+|||+++.++. .+++.+ +.+|++++ +.++++++|.++++
T Consensus 267 ~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~-~~~i~~---~~~g~~~~~~~~~~~~~i~~l~~ 342 (374)
T cd03817 267 VPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGL-PDLVAD---GENGFLFPPGDEALAEALLRLLQ 342 (374)
T ss_pred CChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCCh-hhheec---CceeEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999987 788888 89999987 33399999999999
Q ss_pred CCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012436 423 MPETERLEMAAAARRRAARFSEQRFYEDFKAAIRP 457 (464)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 457 (464)
+++.++++++++++.+++++ ..+++.+++++
T Consensus 343 -~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 373 (374)
T cd03817 343 -DPELRRRLSKNAEESAEKFS---FAKKVEKLYEE 373 (374)
T ss_pred -ChHHHHHHHHHHHHHHHHHH---HHHHHHHHHhc
Confidence 99999999999999986555 55666666654
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.9e-36 Score=288.32 Aligned_cols=351 Identities=23% Similarity=0.208 Sum_probs=253.3
Q ss_pred eEEEecCCCCCC-CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 36 SVAFFHPNTNDG-GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 36 kI~~~~~~~~~~-GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
||+++++.+++. ||+++.+..++++|.+.||+ |.+++.......... . . .. .+.......
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~--v~~~~~~~~~~~~~~-~---~--~~------~~~~~~~~~----- 61 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHE--VLVIAPGPFRESEGP-A---R--VV------PVPSVPLPG----- 61 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCE--EEEEeCCchhhccCC-C---C--ce------eecccccCc-----
Confidence 688888777665 89999999999999999955 455554321000000 0 0 00 000000000
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccc---hhhhccCceEEEEeeCCcchhhhhhcccccccccCCC
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTY---PLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~---~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~ 191 (464)
+.... ..+.......+.+++.+||+||.+....... .+++..++|++.+.|.... ....
T Consensus 62 -~~~~~---~~~~~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~--------- 123 (364)
T cd03814 62 -YPEIR---LALPPRRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFP-----EYLR--------- 123 (364)
T ss_pred -ccceE---ecccchhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChH-----HHhh---------
Confidence 00000 0112233445557788999998665433221 1555789999999994221 0000
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCC------
Q 012436 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLER------ 265 (464)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~------ 265 (464)
...............+.+.+.+|.+++.|+...+.+.+.. ..++.++++|+|.+.+.+.....
T Consensus 124 ---------~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 192 (364)
T cd03814 124 ---------YYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELRARG--FRRVRLWPRGVDTELFHPRRRDEALRARL 192 (364)
T ss_pred ---------hcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhccC--CCceeecCCCccccccCcccccHHHHHHh
Confidence 0000111122234556677999999999999999765543 56888999999987665322111
Q ss_pred -CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 012436 266 -STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (464)
Q Consensus 266 -~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 344 (464)
..+.+.++|+|++...||++.++++++.+.++ ++++++++|.++.. +.++ +..++|.+.|++
T Consensus 193 ~~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-----~~~~l~i~G~~~~~------~~~~------~~~~~v~~~g~~ 255 (364)
T cd03814 193 GPPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-----PPVRLVIVGDGPAR------ARLE------ARYPNVHFLGFL 255 (364)
T ss_pred CCCCCeEEEEEeccccccCHHHHHHHHHHhhhc-----CCceEEEEeCCchH------HHHh------ccCCcEEEEecc
Confidence 13457899999999999999999999999765 38999999988643 2232 335789999999
Q ss_pred ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 345 ~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
+.+++.++|+.||++++||..|++|++++|||+||+|||+++.++. .+++.+ +.+|++++ |.++++++|.++++
T Consensus 256 ~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~-~~~i~~---~~~g~~~~~~~~~~l~~~i~~l~~ 331 (364)
T cd03814 256 DGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGP-ADIVTD---GENGLLVEPGDAEAFAAALAALLA 331 (364)
T ss_pred CHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCc-hhhhcC---CcceEEcCCCCHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999988 788887 78999886 88899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 423 MPETERLEMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
|++.++++++++++.+++|+|+.+++++.++|+
T Consensus 332 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 332 -DPELRRRMAARARAEAERRSWEAFLDNLLEAYR 364 (364)
T ss_pred -CHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhhC
Confidence 999999999999998888999999999998873
No 47
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=5.5e-36 Score=287.73 Aligned_cols=334 Identities=16% Similarity=0.154 Sum_probs=239.1
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||+++++++ ..||+++++.+++++|.+.|+++++++..... ....... ...++ .++..+.+.
T Consensus 1 kIl~~~~~~-~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~----~~~~~~~-~~~~~------~~~~~~~~~------ 62 (358)
T cd03812 1 KILHIVGTM-NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE----GDYDDEI-EKLGG------KIYYIPARK------ 62 (358)
T ss_pred CEEEEeCCC-CCccHHHHHHHHHHhcCccceEEEEEEeCCCC----cchHHHH-HHcCC------eEEEecCCC------
Confidence 789999988 55799999999999999999555544433221 1111111 11222 222211110
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceE-EEEeeCCcchhhhhhcccccccccCCCc
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRV-ICYTHYPTISLDMISRVREGSSMYNNNA 192 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~-v~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (464)
. ..........+.+++.+||+||.+......+. +++..+.|. +.+.|......
T Consensus 63 -~------~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------- 118 (358)
T cd03812 63 -K------NPLKYFKKLYKLIKKNKYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSH----------------- 118 (358)
T ss_pred -c------cHHHHHHHHHHHHhcCCCCEEEEeCcchhHHHHHHHhhCCCCeEEEEeccccccc-----------------
Confidence 0 00122334445677889999997766433322 334456665 45566322100
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC--------C
Q 012436 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL--------E 264 (464)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~--------~ 264 (464)
..... ... ..++++...+.+|.++++|+..++.+.+. ....++.++|||+|.+.+...+. .
T Consensus 119 -----~~~~~---~~~--~~~~~~~~~~~~~~~i~~s~~~~~~~~~~-~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~ 187 (358)
T cd03812 119 -----DKKKK---ILK--YKVLRKLINRLATDYLACSEEAGKWLFGK-VKNKKFKVIPNGIDLEKFIFNEEIRKKRRELG 187 (358)
T ss_pred -----cccch---hhH--HHHHHHHHHhcCCEEEEcCHHHHHHHHhC-CCcccEEEEeccCcHHHcCCCchhhhHHHHcC
Confidence 00000 000 03445667789999999999999988775 33678999999999876653222 1
Q ss_pred CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 012436 265 RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (464)
Q Consensus 265 ~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 344 (464)
...++++|+|+|++.+.||++.+++++..+.++. |+++++++|+|+.. +.+++.++++++.++|.++|+.
T Consensus 188 ~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~----~~~~l~ivG~g~~~------~~~~~~~~~~~~~~~v~~~g~~ 257 (358)
T cd03812 188 ILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKN----PNAKLLLVGDGELE------EEIKKKVKELGLEDKVIFLGVR 257 (358)
T ss_pred CCCCCEEEEEEeccccccChHHHHHHHHHHHHhC----CCeEEEEEeCCchH------HHHHHHHHhcCCCCcEEEeccc
Confidence 2356789999999999999999999999998876 69999999998643 6788888889999999999994
Q ss_pred ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHcC
Q 012436 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIISM 423 (464)
Q Consensus 345 ~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~~ 423 (464)
+++.++|+.||++++||..|++|++++|||++|+|||+|+.++. .+++.+ +..++..+ ++++++++|.++++
T Consensus 258 --~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~-~~~i~~---~~~~~~~~~~~~~~a~~i~~l~~- 330 (358)
T cd03812 258 --NDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITK-EVDLTD---LVKFLSLDESPEIWAEEILKLKS- 330 (358)
T ss_pred --CCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCch-hhhhcc---CccEEeCCCCHHHHHHHHHHHHh-
Confidence 88999999999999999999999999999999999999999998 677776 44444444 78999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 012436 424 PETERLEMAAAARRRA 439 (464)
Q Consensus 424 ~~~~~~~~~~~~~~~~ 439 (464)
|++.++++...+....
T Consensus 331 ~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 331 EDRRERSSESIKKKGL 346 (358)
T ss_pred Ccchhhhhhhhhhccc
Confidence 9999888877776544
No 48
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=1.7e-35 Score=284.43 Aligned_cols=343 Identities=19% Similarity=0.194 Sum_probs=250.1
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||+++++..+. ||+++++.+++++|.+.||+++++...+.. . ...... .. ....+....
T Consensus 1 ~il~~~~~~~~-gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~--~-~~~~~~-----~~------~~~~~~~~~------ 59 (360)
T cd04951 1 KILYVITGLGL-GGAEKQVVDLADQFVAKGHQVAIISLTGES--E-VKPPID-----AT------IILNLNMSK------ 59 (360)
T ss_pred CeEEEecCCCC-CCHHHHHHHHHHhcccCCceEEEEEEeCCC--C-ccchhh-----cc------ceEEecccc------
Confidence 57888777654 599999999999999999766655544322 1 110000 00 000111000
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch-hhh--ccCceEEEEeeCCcchhhhhhcccccccccCCCc
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~-~~~--~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (464)
.....+.......+.+++.+||+||.+...+.... +.+ ..+.|++.+.|....
T Consensus 60 -----~~~~~~~~~~~~~~~~~~~~pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~------------------- 115 (360)
T cd04951 60 -----NPLSFLLALWKLRKILRQFKPDVVHAHMFHANIFARLLRLFLPSPPLICTAHSKNE------------------- 115 (360)
T ss_pred -----cchhhHHHHHHHHHHHHhcCCCEEEEcccchHHHHHHHHhhCCCCcEEEEeeccCc-------------------
Confidence 00111233445566788899999998766544332 222 356788998883210
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCC--------
Q 012436 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL-------- 263 (464)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~-------- 263 (464)
... ...+..+...+.++.++++|+...+.+.+.+.. ..++.++|||+|.+.+.....
T Consensus 116 -------~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~ 181 (360)
T cd04951 116 -------GGR-------LRMLAYRLTDFLSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNA 181 (360)
T ss_pred -------hhH-------HHHHHHHHHhhccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHH
Confidence 000 111223444467888999999999999887544 578999999999876653221
Q ss_pred -CCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc
Q 012436 264 -ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (464)
Q Consensus 264 -~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 342 (464)
...+++++++++|++.+.||++.+++++..+.++. |+++|+++|+|+.. +++++.++++++.++|.+.|
T Consensus 182 ~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~~------~~~~~~~~~~~~~~~v~~~g 251 (360)
T cd04951 182 LGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDY----LDIKLLIAGDGPLR------ATLERLIKALGLSNRVKLLG 251 (360)
T ss_pred cCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhC----CCeEEEEEcCCCcH------HHHHHHHHhcCCCCcEEEec
Confidence 11345689999999999999999999999998766 68999999998753 67788888888888999999
Q ss_pred CCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeec--CCHHHHHHHHHHH
Q 012436 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLA--QNAEEYADAIVKI 420 (464)
Q Consensus 343 ~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~--~~~~~la~~i~~l 420 (464)
+. +++.++|+.||++++||..|++|++++|||++|+|||+++.++. .+++.+ +|+.+ +|+++++++|.++
T Consensus 252 ~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~-~e~i~~-----~g~~~~~~~~~~~~~~i~~l 323 (360)
T cd04951 252 LR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGV-REVVGD-----SGLIVPISDPEALANKIDEI 323 (360)
T ss_pred cc--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCCh-hhEecC-----CceEeCCCCHHHHHHHHHHH
Confidence 87 78999999999999999999999999999999999999999888 678755 45444 4999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHH
Q 012436 421 ISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~ 456 (464)
++.+++.++.++++ ++.+ ++|||+.+++++.++|+
T Consensus 324 l~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 324 LKMSGEERDIIGAR-RERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred HhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhh
Confidence 95266666666666 6666 99999999999999986
No 49
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=3.6e-36 Score=299.45 Aligned_cols=391 Identities=17% Similarity=0.110 Sum_probs=257.1
Q ss_pred eEEEecCCCCC---CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhh--c---------Cc----ccC
Q 012436 36 SVAFFHPNTND---GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDR--F---------GV----ELL 97 (464)
Q Consensus 36 kI~~~~~~~~~---~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~---------~~----~~~ 97 (464)
||+++++-..+ .||.+.++..|+++|++.| ++|.++++.++............. + .+ ...
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G--~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLG--HDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPV 78 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCC--CeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEe
Confidence 68888876444 3999999999999999999 555666655422111110000000 0 00 001
Q ss_pred CCceeeeeeccccccccc------CcceehhhhchhhhHHHHHHhhh--cCCcEEEecccccccch-hh-hc------cC
Q 012436 98 HPPKVVHLYRRKWIEEST------YPRFTMIGQSFGSVYLSWEALCK--FTPLYYFDTSGYAFTYP-LA-RI------FG 161 (464)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~--~~~Dvv~~~~~~~~~~~-~~-~~------~~ 161 (464)
.+++++.+....+..... +.......++......+.+.+++ .+||+||++..+....+ +. +. .+
T Consensus 79 ~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~ 158 (476)
T cd03791 79 DGVPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKN 158 (476)
T ss_pred CCceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCC
Confidence 223444443322221111 11111111112222333444554 79999998877665544 22 23 48
Q ss_pred ceEEEEeeCCcchhhhhhcccccccccCCCcccccchh--hhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHH-
Q 012436 162 CRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNW--LSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEK- 238 (464)
Q Consensus 162 ~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~- 238 (464)
+|+|+++|+.............. .. ..+ ..............+++..++.+|.++++|+..++.+.+
T Consensus 159 ~~~v~tiH~~~~~g~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~ 228 (476)
T cd03791 159 IKTVFTIHNLAYQGVFPLEALED----LG------LPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTP 228 (476)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHH----cC------CCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCC
Confidence 99999999543111000000000 00 000 000000000001135677789999999999999988863
Q ss_pred --------HhC-CCCCeEEecCCCCCCCCccCCCCC----------------------------CCCCcEEEEEeccCCC
Q 012436 239 --------LWG-IPDRIKRVYPPCDTSGLQVLPLER----------------------------STEYPAIISVAQFRPE 281 (464)
Q Consensus 239 --------~~~-~~~~i~~i~~~~d~~~~~~~~~~~----------------------------~~~~~~i~~~G~~~~~ 281 (464)
.+. ...++.+|+||+|.+.+.+..... .++.++++|+||+.+.
T Consensus 229 ~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~ 308 (476)
T cd03791 229 EFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQ 308 (476)
T ss_pred CCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeecccc
Confidence 111 257999999999998876432211 2567899999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEE
Q 012436 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIH 361 (464)
Q Consensus 282 K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ 361 (464)
||++.+++++..+.+. +++|+++|+|+. .+.+.++++++++ .+++.+.+..+.+++..+|+.||++++
T Consensus 309 Kg~~~li~a~~~l~~~------~~~lvi~G~g~~----~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aDv~l~ 376 (476)
T cd03791 309 KGIDLLLEALPELLEL------GGQLVILGSGDP----EYEEALRELAARY--PGRVAVLIGYDEALAHLIYAGADFFLM 376 (476)
T ss_pred ccHHHHHHHHHHHHHc------CcEEEEEecCCH----HHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhCCEEEC
Confidence 9999999999998764 689999999842 3446677777665 468888777778888999999999999
Q ss_pred cCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCcc------ceeecC--CHHHHHHHHHHHHc--CCHHHHHHH
Q 012436 362 SMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQ------TGFLAQ--NAEEYADAIVKIIS--MPETERLEM 431 (464)
Q Consensus 362 ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~------~g~~~~--~~~~la~~i~~l~~--~~~~~~~~~ 431 (464)
||..|++|++++|||+||+|||+++.+|. .|++.+ +. +|++++ |+++++++|.++++ .+++.+.++
T Consensus 377 pS~~E~~gl~~lEAma~G~pvI~~~~gg~-~e~v~~---~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~ 452 (476)
T cd03791 377 PSRFEPCGLTQMYAMRYGTVPIVRATGGL-ADTVID---YNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKL 452 (476)
T ss_pred CCCCCCCcHHHHHHhhCCCCCEECcCCCc-cceEeC---CcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 99999999999999999999999999998 688877 66 899986 89999999998874 155666666
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 432 AAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 432 ~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
++++.+ +.|||+.+++++.++|+
T Consensus 453 ~~~~~~--~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 453 QRNAMA--QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHhc--cCCChHHHHHHHHHHHh
Confidence 665543 67999999999999986
No 50
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-37 Score=271.03 Aligned_cols=362 Identities=15% Similarity=0.151 Sum_probs=274.4
Q ss_pred ceEEEecCCCCCC-CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCC-ceeeeeecccccc
Q 012436 35 TSVAFFHPNTNDG-GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHP-PKVVHLYRRKWIE 112 (464)
Q Consensus 35 mkI~~~~~~~~~~-GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 112 (464)
++|+.+.+.+-+. ||.|.+.+++++.|.+.| +.|++.|..++ ++.|++...+ .++++++......
T Consensus 1 ~~i~mVsdff~P~~ggveshiy~lSq~li~lg--hkVvvithayg-----------~r~girylt~glkVyylp~~v~~n 67 (426)
T KOG1111|consen 1 SRILMVSDFFYPSTGGVESHIYALSQCLIRLG--HKVVVITHAYG-----------NRVGIRYLTNGLKVYYLPAVVGYN 67 (426)
T ss_pred CcceeeCcccccCCCChhhhHHHhhcchhhcC--CeEEEEecccc-----------CccceeeecCCceEEEEeeeeeec
Confidence 4678887766544 899999999999999999 77777776542 1225544444 4788887765554
Q ss_pred cccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch----hhhccCceEEEEeeCCcchhhhhhccccccccc
Q 012436 113 ESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP----LARIFGCRVICYTHYPTISLDMISRVREGSSMY 188 (464)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~----~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~ 188 (464)
...+|.+ +.....+...+.+.+..++|.++.++.... .++..|.+.|++-|.-.-..|.
T Consensus 68 ~tT~ptv------~~~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~hartMGlktVfTdHSlfGfad~----------- 130 (426)
T KOG1111|consen 68 QTTFPTV------FSDFPLLRPILLRERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHSLFGFADI----------- 130 (426)
T ss_pred ccchhhh------hccCcccchhhhhhceEEEecCChHHHHHHHHHHHHHhcCceEEEeccccccccch-----------
Confidence 4444443 222333334455568999998888766543 5667899999999931100000
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCCCC-
Q 012436 189 NNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERS- 266 (464)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~~~- 266 (464)
- .......-...+...|++||+|...++...-+... ++++.+|||.++.+.|.+.+....
T Consensus 131 --------------~----si~~n~ll~~sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~~S 192 (426)
T KOG1111|consen 131 --------------G----SILTNKLLPLSLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADKPS 192 (426)
T ss_pred --------------h----hhhhcceeeeeecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccccCC
Confidence 0 11111233556788999999999988766444333 789999999999999987444443
Q ss_pred CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
.+..+++.+||+-.+||+|.+++++.++.++. |+++++|+|+||.+ ..+++..+++.+.++|.++|.+++
T Consensus 193 ~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~----p~vrfii~GDGPk~------i~lee~lEk~~l~~rV~~lG~v~h 262 (426)
T KOG1111|consen 193 ADIITIVVASRLVYRKGIDLLLEIIPSVCDKH----PEVRFIIIGDGPKR------IDLEEMLEKLFLQDRVVMLGTVPH 262 (426)
T ss_pred CCeeEEEEEeeeeeccchHHHHHHHHHHHhcC----CCeeEEEecCCccc------chHHHHHHHhhccCceEEecccch
Confidence 44489999999999999999999999999987 79999999999865 567888888888999999999999
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHcCCH
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIISMPE 425 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~~~~ 425 (464)
+++.+.|.+-|+|++||..|.|+++++||++||+|||+++.||. +|++.+ +.-++.+ +++++++++.++++ .
T Consensus 263 ~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVGGI-peVLP~----d~i~~~~~~~~dl~~~v~~ai~-~- 335 (426)
T KOG1111|consen 263 DRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVGGI-PEVLPE----DMITLGEPGPDDLVGAVEKAIT-K- 335 (426)
T ss_pred HHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEeecCCc-cccCCc----cceeccCCChHHHHHHHHHHHH-H-
Confidence 99999999999999999999999999999999999999999999 688766 3333444 89999999988886 2
Q ss_pred HHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhhcC
Q 012436 426 TERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPILCHAA 463 (464)
Q Consensus 426 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~ 463 (464)
+...-+...+.+ +.|+|+.++++-.+.|.++...+.
T Consensus 336 --~~~~p~~~h~~v~~~y~w~dVa~rTekvy~r~~~t~~ 372 (426)
T KOG1111|consen 336 --LRTLPLEFHDRVKKMYSWKDVAERTEKVYDRAATTSI 372 (426)
T ss_pred --hccCchhHHHHHHHhccHHHHHHHHHHHHHHHhhccC
Confidence 122223445556 789999999999999999876653
No 51
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.1e-36 Score=296.24 Aligned_cols=291 Identities=17% Similarity=0.180 Sum_probs=233.1
Q ss_pred cCCcEEEecccccc-cch--hhhccCceEEEEeeCCcchh---hhhhcccccccccCCCcccccchhhhHHHHHHHHHHH
Q 012436 139 FTPLYYFDTSGYAF-TYP--LARIFGCRVICYTHYPTISL---DMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFS 212 (464)
Q Consensus 139 ~~~Dvv~~~~~~~~-~~~--~~~~~~~p~v~~~h~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (464)
.++|++|.++.... ... +++..++|+|++.|+-.... ++... .......+..+.+.+.
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~----------------~~~~~~~~~~~~~~~~ 235 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKARRGTPFLLTEHGIYTRERKIELLQA----------------DWEMSYFRRLWIRFFE 235 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhc----------------ccchHHHHHHHHHHHH
Confidence 37899998764322 222 45578999999999421100 00000 0011223344455667
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC-CCCCCCcEEEEEeccCCCCChHHHHHHH
Q 012436 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL-ERSTEYPAIISVAQFRPEKAHPLQLEAF 291 (464)
Q Consensus 213 ~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~-~~~~~~~~i~~~G~~~~~K~~~~ll~a~ 291 (464)
.+++.+++.||.|+++|+..++...+.+..++++.+||||+|.+.+.+... ....+.++|+|+||+.+.||++.+++|+
T Consensus 236 ~l~~~~~~~ad~Ii~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~ 315 (475)
T cd03813 236 SLGRLAYQAADRITTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPARRARPEKEPPVVGLIGRVVPIKDIKTFIRAA 315 (475)
T ss_pred HHHHHHHHhCCEEEecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCccccccCCCCcEEEEEeccccccCHHHHHHHH
Confidence 788889999999999999999887665333678999999999987764432 1235668999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChH
Q 012436 292 SVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGIS 371 (464)
Q Consensus 292 ~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~ 371 (464)
+.+.+.. |+++++|+|++++ +..+.++++++++++++.++|.|+| .+++.++|+.+|++++||..|++|++
T Consensus 316 ~~l~~~~----p~~~l~IvG~g~~--~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~ 386 (475)
T cd03813 316 AIVRKKI----PDAEGWVIGPTDE--DPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPLV 386 (475)
T ss_pred HHHHHhC----CCeEEEEECCCCc--ChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCchhhcCChH
Confidence 9998876 6999999998863 3467789999999999999999999 37899999999999999999999999
Q ss_pred HHHHHHhCCcEEEeCCCCCccceecccCC---ccceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHH
Q 012436 372 VVEYMAAGAIPIAHNSAGPKMDIVLEEDG---QQTGFLAQ--NAEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQ 445 (464)
Q Consensus 372 ~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~---~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~ 445 (464)
++|||+||+|||+|+.++. .+++.+... |.+|++++ |+++++++|.++++ |++.++++++++++.+ +.|+|+
T Consensus 387 vlEAma~G~PVVatd~g~~-~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~-~~~~~~~~~~~a~~~v~~~~s~~ 464 (475)
T cd03813 387 ILEAMAAGIPVVATDVGSC-RELIEGADDEALGPAGEVVPPADPEALARAILRLLK-DPELRRAMGEAGRKRVERYYTLE 464 (475)
T ss_pred HHHHHHcCCCEEECCCCCh-HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999998 677765110 24888876 99999999999999 9999999999999999 889999
Q ss_pred HHHHHHHHHHH
Q 012436 446 RFYEDFKAAIR 456 (464)
Q Consensus 446 ~~~~~~~~~~~ 456 (464)
.+++++.++|+
T Consensus 465 ~~~~~y~~lY~ 475 (475)
T cd03813 465 RMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 52
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=3.4e-35 Score=282.15 Aligned_cols=349 Identities=23% Similarity=0.237 Sum_probs=259.6
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||+++.+.+.. ||+++++..++++|.+.|++++++..... ....+.... .++ ++..+.....
T Consensus 1 ~i~~i~~~~~~-gG~~~~~~~l~~~l~~~~~~v~~~~~~~~-----~~~~~~~~~-~~i------~v~~~~~~~~----- 62 (365)
T cd03807 1 KVLHVITGLDV-GGAERMLVRLLKGLDRDRFEHVVISLTDR-----GELGEELEE-AGV------PVYCLGKRPG----- 62 (365)
T ss_pred CeEEEEeeccC-ccHHHHHHHHHHHhhhccceEEEEecCcc-----hhhhHHHHh-cCC------eEEEEecccc-----
Confidence 68999888877 59999999999999999966665554322 112121111 222 3333332211
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhc-cCceEEEEeeCCcchhhhhhcccccccccCCCc
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARI-FGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~-~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (464)
.........+.+.+++.+||+||++........ ..+. .+.|++++.|.....
T Consensus 63 -------~~~~~~~~~~~~~~~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------------ 117 (365)
T cd03807 63 -------RPDPGALLRLYKLIRRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLD------------------ 117 (365)
T ss_pred -------cccHHHHHHHHHHHHhhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCccc------------------
Confidence 011233455667788899999997655443332 2333 688999998832210
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCC--------
Q 012436 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE-------- 264 (464)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~-------- 264 (464)
.. ........++.+...+.+|.++++|+..++.+.+......++.+++||+|...+......
T Consensus 118 ------~~----~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 187 (365)
T cd03807 118 ------LG----KKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREEL 187 (365)
T ss_pred ------cc----chhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCCChhheeEeCCCcCHHhcCCcccchHHHHHhc
Confidence 00 011122334556667889999999999999998863236788999999998765532211
Q ss_pred -CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHH-hcCCCCcEEEcc
Q 012436 265 -RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI-ELKVDGNVEFYK 342 (464)
Q Consensus 265 -~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~-~~~l~~~v~~~g 342 (464)
.+++.+.++++|++.+.||++.+++++..+.++. ++++++++|.++.. +..+.... ++++.+++.+.|
T Consensus 188 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~----~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~~v~~~g 257 (365)
T cd03807 188 GLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKF----PNARLLLVGDGPDR------ANLELLALKELGLEDKVILLG 257 (365)
T ss_pred CCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhC----CCeEEEEecCCcch------hHHHHHHHHhcCCCceEEEcc
Confidence 1245678999999999999999999999998775 68999999998654 33444444 778888999999
Q ss_pred CCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHH
Q 012436 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKI 420 (464)
Q Consensus 343 ~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l 420 (464)
.. +++.++|+.||++++||..|++|++++|||+||+|||+++.++. .+++.+ +|++++ |+++++++|.++
T Consensus 258 ~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~-~e~~~~-----~g~~~~~~~~~~l~~~i~~l 329 (365)
T cd03807 258 ER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDN-AELVGD-----TGFLVPPGDPEALAEAIEAL 329 (365)
T ss_pred cc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCCh-HHHhhc-----CCEEeCCCCHHHHHHHHHHH
Confidence 76 78999999999999999999999999999999999999999988 666643 666664 999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHH
Q 012436 421 ISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~ 456 (464)
++ +++.+.++++++++.+ ++|||+.+++++.++|+
T Consensus 330 ~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 330 LA-DPALRQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred Hh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99 9999999999999999 88999999999999874
No 53
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=5.3e-35 Score=281.62 Aligned_cols=361 Identities=19% Similarity=0.200 Sum_probs=263.1
Q ss_pred EEEecCCCCC--CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 37 VAFFHPNTND--GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 37 I~~~~~~~~~--~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|+++++..+. .||+++++..++++|.+.|++++++...... ............... ... .....
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~--~~~~~~~~~~~~~~~------~~~-~~~~~----- 66 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWG--PKLLDLLKGRLVGVE------RLP-VLLPV----- 66 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCC--CCchhhccccccccc------ccc-cCcch-----
Confidence 5677777766 4899999999999999999555544433222 111100000000000 000 00000
Q ss_pred cCcceehhhhchhhhHHHHHHhh--hcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhcccccccccC
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALC--KFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~--~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~ 189 (464)
..................+.++ ..+||+|+.+........ +.+..++|++++.|......
T Consensus 67 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------------- 131 (377)
T cd03798 67 -VPLLKGPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNL-------------- 131 (377)
T ss_pred -hhccccchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcc--------------
Confidence 0000001111222334455676 889999987654433322 44467789999999443100
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC------
Q 012436 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------ 263 (464)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~------ 263 (464)
... . ......++..++.+|.+++.|+..++.+.+.+....++.+++||+|.+.+.....
T Consensus 132 ---------~~~-~-----~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (377)
T cd03798 132 ---------LPR-K-----RLLRALLRRALRRADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEARKL 196 (377)
T ss_pred ---------cCc-h-----hhHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCCCcchHHHHhc
Confidence 000 0 0233455677799999999999999999987534789999999999887764332
Q ss_pred CCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 012436 264 ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (464)
Q Consensus 264 ~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 343 (464)
....+.+.++++|++.+.||++.++++++.+.+.. ++++++++|.++.. +.+++.++++++.++|.+.|+
T Consensus 197 ~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~----~~~~l~i~g~~~~~------~~~~~~~~~~~~~~~v~~~g~ 266 (377)
T cd03798 197 GLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKR----PDVHLVIVGDGPLR------EALEALAAELGLEDRVTFLGA 266 (377)
T ss_pred cCCCCceEEEEeccCccccCHHHHHHHHHHHHhcC----CCeEEEEEcCCcch------HHHHHHHHhcCCcceEEEeCC
Confidence 23346689999999999999999999999998764 58999999988643 567777888888889999999
Q ss_pred CChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHH
Q 012436 344 LLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKII 421 (464)
Q Consensus 344 ~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~ 421 (464)
++++++.++|++||++++|+..|++|.+++|||++|+|||+++.++. .+++.+ +.+|++++ |+++++++|.+++
T Consensus 267 ~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~-~~~~~~---~~~g~~~~~~~~~~l~~~i~~~~ 342 (377)
T cd03798 267 VPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGI-PEIITD---GENGLLVPPGDPEALAEAILRLL 342 (377)
T ss_pred CCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCCh-HHHhcC---CcceeEECCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988 788888 78888775 9999999999999
Q ss_pred cCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHH
Q 012436 422 SMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~ 458 (464)
+ +++. ++..++++.+ ++|+|+.+++++.++++++
T Consensus 343 ~-~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 343 A-DPWL--RLGRAARRRVAERFSWENVAERLLELYREV 377 (377)
T ss_pred c-CcHH--HHhHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 9 8876 6777788777 9999999999999998763
No 54
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=7.9e-35 Score=279.29 Aligned_cols=348 Identities=18% Similarity=0.115 Sum_probs=246.8
Q ss_pred eEEEecCCCCCC--CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 36 SVAFFHPNTNDG--GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 36 kI~~~~~~~~~~--GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
||+++++++++. ||+++++.+++++|.+.|+++.++...... ........ .. .............
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~~~~~-----~~------~~~~~~~~~~~~~ 67 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDP--PRQDKEVI-----GV------VVYGRPIDEVLRS 67 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCC--CCcccccc-----cc------eeeccccccccCC
Confidence 689998887765 899999999999999999555554433322 11110000 00 0000000000000
Q ss_pred c-cCccee-hhhhchhhhHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhccccccccc
Q 012436 114 S-TYPRFT-MIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMY 188 (464)
Q Consensus 114 ~-~~~~~~-~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~ 188 (464)
. ....+. .............+.+++.+||+||.+........ .++..++|++.++|....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~--------------- 132 (359)
T cd03823 68 ALPRDLFHLSDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWL--------------- 132 (359)
T ss_pred CchhhhhHHHhccCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeee---------------
Confidence 0 000000 00111223445566788899999997665333222 445678999999993210
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCC
Q 012436 189 NNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTE 268 (464)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~ 268 (464)
.... ........|.++++|+..++.+.+.+....++.+++||+|...+.........+
T Consensus 133 -----------~~~~-----------~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~~~~~~ 190 (359)
T cd03823 133 -----------ICPR-----------QGLFKKGGDAVIAPSRFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRRAPPGG 190 (359)
T ss_pred -----------ecch-----------hhhhccCCCEEEEeCHHHHHHHHHcCCCccceEEecCCcChhhccccccCCCCC
Confidence 0000 011113339999999999999988764457899999999988776433223456
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
+++++|+|++.+.||++.++++++.+.+ ++++|+++|.++... ...... +..++|.+.|+++.++
T Consensus 191 ~~~i~~~G~~~~~k~~~~li~~~~~l~~------~~~~l~i~G~~~~~~------~~~~~~---~~~~~v~~~g~~~~~~ 255 (359)
T cd03823 191 RLRFGFIGQLTPHKGVDLLLEAFKRLPR------GDIELVIVGNGLELE------EESYEL---EGDPRVEFLGAYPQEE 255 (359)
T ss_pred ceEEEEEecCccccCHHHHHHHHHHHHh------cCcEEEEEcCchhhh------HHHHhh---cCCCeEEEeCCCCHHH
Confidence 6899999999999999999999999876 289999999986431 111111 4467999999999999
Q ss_pred HHHHHhcCcEEEEcCC-CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcCCH
Q 012436 349 LVKLLGGAVVGIHSMI-DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPE 425 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~ 425 (464)
+.++|++||++++||. .|++|++++|||++|+|||+++.++. .+++.+ +.+|++++ |++++++++.++++ |+
T Consensus 256 ~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~-~e~i~~---~~~g~~~~~~d~~~l~~~i~~l~~-~~ 330 (359)
T cd03823 256 IDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGM-AELVRD---GVNGLLFPPGDAEDLAAALERLID-DP 330 (359)
T ss_pred HHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCH-HHHhcC---CCcEEEECCCCHHHHHHHHHHHHh-Ch
Confidence 9999999999999997 89999999999999999999999988 788887 77898886 79999999999999 99
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 426 TERLEMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 426 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
+.++++++++++..+. +.+++++.++|+
T Consensus 331 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 358 (359)
T cd03823 331 DLLERLRAGIEPPRSI---EDQAEEYLKLYR 358 (359)
T ss_pred HHHHHHHHhHHHhhhH---HHHHHHHHHHhh
Confidence 9999999998876632 888888888875
No 55
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=2e-34 Score=276.06 Aligned_cols=349 Identities=22% Similarity=0.195 Sum_probs=254.1
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||+++.+. .||.++++..++++|.+.|+++. +++....... .....++ .++.++.... .
T Consensus 1 kIl~i~~~---~~g~~~~~~~l~~~L~~~g~~v~--~~~~~~~~~~------~~~~~~~------~~~~~~~~~~----~ 59 (359)
T cd03808 1 KILHIVTV---DGGLYSFRLPLIKALRAAGYEVH--VVAPPGDELE------ELEALGV------KVIPIPLDRR----G 59 (359)
T ss_pred CeeEEEec---chhHHHHHHHHHHHHHhcCCeeE--EEecCCCccc------ccccCCc------eEEecccccc----c
Confidence 68888887 46999999999999999995554 4444321111 0001122 2222222110 0
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCc
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (464)
.. ....+.......+.+++.+||+||.+...+..+. .++ ..+.+++...|....
T Consensus 60 ~~----~~~~~~~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------- 116 (359)
T cd03808 60 IN----PFKDLKALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGF------------------- 116 (359)
T ss_pred cC----hHhHHHHHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcch-------------------
Confidence 00 0111223445566788899999997765444333 233 345556666562210
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC--CCCeEEecCCCCCCCCccCCCCCCCCCc
Q 012436 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI--PDRIKRVYPPCDTSGLQVLPLERSTEYP 270 (464)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~--~~~i~~i~~~~d~~~~~~~~~~~~~~~~ 270 (464)
...........+..+++..++.+|.++++|+...+.+.+.+.. ..++.+.++++|.+.+...+.....+++
T Consensus 117 -------~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (359)
T cd03808 117 -------VFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEPIPEDDP 189 (359)
T ss_pred -------hhccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccccCCCCc
Confidence 0000011334455667888899999999999999999888654 3567777888888766533221245668
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHH-HHHhcCCCCcEEEccCCChhHH
Q 012436 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKD-KSIELKVDGNVEFYKNLLYRDL 349 (464)
Q Consensus 271 ~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~-~~~~~~l~~~v~~~g~~~~~~~ 349 (464)
.++|+|++.+.||++.++++++.+.+.. ++++|+++|.++..+. ... .+.+.+..++|.+.|+. +++
T Consensus 190 ~i~~~G~~~~~k~~~~li~~~~~l~~~~----~~~~l~i~G~~~~~~~------~~~~~~~~~~~~~~v~~~g~~--~~~ 257 (359)
T cd03808 190 VFLFVARLLKDKGIDELLEAARILKAKG----PNVRLLLVGDGDEENP------AAILEIEKLGLEGRVEFLGFR--DDV 257 (359)
T ss_pred EEEEEeccccccCHHHHHHHHHHHHhcC----CCeEEEEEcCCCcchh------hHHHHHHhcCCcceEEEeecc--ccH
Confidence 9999999999999999999999987755 5899999999875421 111 35566667899999995 899
Q ss_pred HHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHH
Q 012436 350 VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETE 427 (464)
Q Consensus 350 ~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~ 427 (464)
.++|++||++++||..|++|++++|||++|+|||+++.++. .+++.+ +.+|++++ |+++++++|.+++. |++.
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~-~~~i~~---~~~g~~~~~~~~~~~~~~i~~l~~-~~~~ 332 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGC-REAVID---GVNGFLVPPGDAEALADAIERLIE-DPEL 332 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCc-hhhhhc---CcceEEECCCCHHHHHHHHHHHHh-CHHH
Confidence 99999999999999999999999999999999999999988 788887 78999886 89999999999999 9999
Q ss_pred HHHHHHHHHHHH-HccCHHHHHHHHH
Q 012436 428 RLEMAAAARRRA-ARFSEQRFYEDFK 452 (464)
Q Consensus 428 ~~~~~~~~~~~~-~~~s~~~~~~~~~ 452 (464)
++++++++++.+ ++|+|+.+++++.
T Consensus 333 ~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 333 RARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 999999999997 9999999998875
No 56
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=1.9e-34 Score=277.74 Aligned_cols=344 Identities=16% Similarity=0.085 Sum_probs=243.6
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||++++.+... ||+++++..++++|.+.||++.+++....
T Consensus 1 MkIl~~~~~~~~-gG~~~~~~~l~~~l~~~G~~v~v~~~~~~-------------------------------------- 41 (365)
T cd03825 1 MKVLHLNTSDIS-GGAARAAYRLHRALQAAGVDSTMLVQEKK-------------------------------------- 41 (365)
T ss_pred CeEEEEecCCCC-CcHHHHHHHHHHHHHhcCCceeEEEeecc--------------------------------------
Confidence 899999876433 69999999999999999966555543321
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhc--cCceEEEEeeCCcchhhhhhcccccccccCC
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARI--FGCRVICYTHYPTISLDMISRVREGSSMYNN 190 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~--~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~ 190 (464)
...+.++..+||+||.+......+. .... .++|+|+++|........... ......|..
T Consensus 42 ----------------~~~~~~~~~~~diih~~~~~~~~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~-~~~~~~~~~ 104 (365)
T cd03825 42 ----------------ALISKIEIINADIVHLHWIHGGFLSIEDLSKLLDRKPVVWTLHDMWPFTGGCHY-PGGCDRYKT 104 (365)
T ss_pred ----------------hhhhChhcccCCEEEEEccccCccCHHHHHHHHcCCCEEEEcccCcccccccCC-ccccccccc
Confidence 0112366779999997654333322 2222 399999999942210000000 000000000
Q ss_pred Cc---ccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCC---
Q 012436 191 NA---SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL--- 263 (464)
Q Consensus 191 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~--- 263 (464)
.. ............ ...+.+........++.++++|++.++.+.+.++. ..++.++|||+|.+.+.+...
T Consensus 105 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~ 181 (365)
T cd03825 105 ECGNCPQLGSYPEKDLS---RWIWRRKRKAWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDKREA 181 (365)
T ss_pred cCCCCCCCCCCCcccHH---HHHHHHHHHHhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcHHHH
Confidence 00 000000000111 11111122222367789999999999999887634 578999999999887643211
Q ss_pred ----CCCCCCcEEEEEeccCC--CCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCc
Q 012436 264 ----ERSTEYPAIISVAQFRP--EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGN 337 (464)
Q Consensus 264 ----~~~~~~~~i~~~G~~~~--~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~ 337 (464)
..+.+...+++.|+... .||++.+++++..+.++.. ++++++++|.++.. ... ++.++
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~---~~~~~~i~G~~~~~--------~~~-----~~~~~ 245 (365)
T cd03825 182 RKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWK---DDIELVVFGASDPE--------IPP-----DLPFP 245 (365)
T ss_pred HHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccC---CCeEEEEeCCCchh--------hhc-----cCCCc
Confidence 11234456666666654 8999999999999877511 58999999988632 111 34568
Q ss_pred EEEccCCC-hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHH
Q 012436 338 VEFYKNLL-YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYA 414 (464)
Q Consensus 338 v~~~g~~~-~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la 414 (464)
+.++|+++ ++++.++|+.||++++||..|++|++++|||++|+|||+++.++. .+++.+ +.+|++++ |+++++
T Consensus 246 v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~-~e~~~~---~~~g~~~~~~~~~~~~ 321 (365)
T cd03825 246 VHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGI-PDIVDH---GVTGYLAKPGDPEDLA 321 (365)
T ss_pred eEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCC-hhheeC---CCceEEeCCCCHHHHH
Confidence 99999998 889999999999999999999999999999999999999999988 688888 77998886 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHH
Q 012436 415 DAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 415 ~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~ 458 (464)
+++.++++ |++.+.++++++++.+ ++|||+.+++++.++|+++
T Consensus 322 ~~l~~l~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 322 EGIEWLLA-DPDEREELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 99999999 9999999999999999 8999999999999999863
No 57
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=6.3e-34 Score=271.90 Aligned_cols=361 Identities=13% Similarity=0.060 Sum_probs=235.7
Q ss_pred cccceEEEecCCCCCC-CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCc--------------hhHHHHHHhhcCccc
Q 012436 32 NRTTSVAFFHPNTNDG-GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFP--------------DSLLARAVDRFGVEL 96 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~-GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 96 (464)
.++|||++++..+.+. +|.......++.+|.++|| |+|.++.+...... .+......+..+.
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~-heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~-- 78 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGD-REVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEE-- 78 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCC-cEEEEEecCCccccccccccccccccCchhhhhhhhhhccC--
Confidence 4579999998766665 8999999999999999993 34555554321000 0000001111111
Q ss_pred CCCceeeeeecccccccccCcc-eehhhhchhhhHHHHHHhhhcCCcEEEecccccccch-----hhhccCceEEEEeeC
Q 012436 97 LHPPKVVHLYRRKWIEESTYPR-FTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-----LARIFGCRVICYTHY 170 (464)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~-----~~~~~~~p~v~~~h~ 170 (464)
.+.+++...+ ..+|. +..-...+.......+.+++++||+||.++....... .++..+ ++|.+.|.
T Consensus 79 ----~v~r~~s~~~---p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~-~vV~tyHT 150 (462)
T PLN02846 79 ----RISFLPKFSI---KFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFR-LVIGIVHT 150 (462)
T ss_pred ----eEEEeccccc---ccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCC-cEEEEECC
Confidence 2222222111 11222 1110111223456677789999999997666554431 222334 47778884
Q ss_pred CcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEec
Q 012436 171 PTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVY 250 (464)
Q Consensus 171 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~ 250 (464)
.. ..+.. .|. .........+...+..++ .++|.++++|....+ +.+ .+.+..
T Consensus 151 ~y-----~~Y~~----~~~----------~g~~~~~l~~~~~~~~~r--~~~d~vi~pS~~~~~-l~~------~~i~~v 202 (462)
T PLN02846 151 NY-----LEYVK----REK----------NGRVKAFLLKYINSWVVD--IYCHKVIRLSAATQD-YPR------SIICNV 202 (462)
T ss_pred Ch-----HHHHH----Hhc----------cchHHHHHHHHHHHHHHH--HhcCEEEccCHHHHH-Hhh------CEEecC
Confidence 21 11111 000 001111112212111122 248999999986655 322 233445
Q ss_pred CCCCCCCCccCCCC-----CCCC--CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHH
Q 012436 251 PPCDTSGLQVLPLE-----RSTE--YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQ 323 (464)
Q Consensus 251 ~~~d~~~~~~~~~~-----~~~~--~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~ 323 (464)
+|+|.+.|.+.... ...+ .+.++|+||+.+.||++.+++|++.+.+.. |+++|+|+|+|+++ +
T Consensus 203 ~GVd~~~f~~~~~~~~~~~~~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~----~~~~l~ivGdGp~~------~ 272 (462)
T PLN02846 203 HGVNPKFLEIGKLKLEQQKNGEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKEL----SGLEVDLYGSGEDS------D 272 (462)
T ss_pred ceechhhcCCCcccHhhhcCCCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhC----CCeEEEEECCCccH------H
Confidence 89998876532111 1122 236899999999999999999999988765 58999999999875 7
Q ss_pred HHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccc
Q 012436 324 SLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQT 403 (464)
Q Consensus 324 ~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~ 403 (464)
++++.++++++..++ |.|..+. .++|+.+|+||+||..|++|++++||||||+|||+++.++ .+++.+ +.+
T Consensus 273 ~L~~~a~~l~l~~~v-f~G~~~~---~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~--~~~v~~---~~n 343 (462)
T PLN02846 273 EVKAAAEKLELDVRV-YPGRDHA---DPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS--NEFFKQ---FPN 343 (462)
T ss_pred HHHHHHHhcCCcEEE-ECCCCCH---HHHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC--cceeec---CCc
Confidence 899999999886444 7886533 3689999999999999999999999999999999999886 388888 899
Q ss_pred eeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 404 GFLAQNAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 404 g~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
|+.++|.+++++++.++++ ++. ..+...++ ++|||+..++++.+.++
T Consensus 344 g~~~~~~~~~a~ai~~~l~-~~~--~~~~~~a~---~~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 344 CRTYDDGKGFVRATLKALA-EEP--APLTDAQR---HELSWEAATERFLRVAD 390 (462)
T ss_pred eEecCCHHHHHHHHHHHHc-cCc--hhHHHHHH---HhCCHHHHHHHHHHHhc
Confidence 9999999999999999997 543 22222222 68999999999999885
No 58
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=1.1e-34 Score=281.43 Aligned_cols=371 Identities=19% Similarity=0.195 Sum_probs=257.0
Q ss_pred eEEEecCCCCCC-CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 36 SVAFFHPNTNDG-GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 36 kI~~~~~~~~~~-GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
||+++.+..++. ||.++++..++++|.+.|+++++++..... ........ .......+..++..+........
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 74 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNY--PSGKIYKG----YKREEVDGVRVHRVPLPPYKKNG 74 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCc--cccccccc----ceEEecCCeEEEEEecCCCCccc
Confidence 688888776553 799999999999999999555544433221 11110000 00011122233333322111100
Q ss_pred cCcceehhhhchhhhHHHHHHh--hhcCCcEEEecccccc-cch---hhhccCceEEEEeeCCcchhhhhhccccccccc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEAL--CKFTPLYYFDTSGYAF-TYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMY 188 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~Dvv~~~~~~~~-~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~ 188 (464)
.+................+ +..+||+||.+..... ..+ +++..++|+++++|........ .
T Consensus 75 ---~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~--~-------- 141 (394)
T cd03794 75 ---LLKRLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAV--A-------- 141 (394)
T ss_pred ---hHHHHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHH--H--------
Confidence 0011111122222233333 3778999997762222 212 3445689999999932110000 0
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC-----
Q 012436 189 NNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL----- 263 (464)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~----- 263 (464)
...........+...++++..++.+|.++++|+..++.+........++.++|||++...+.....
T Consensus 142 ---------~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 212 (394)
T cd03794 142 ---------LGLLKNGSLLYRLLRKLERLIYRRADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADESLR 212 (394)
T ss_pred ---------ccCccccchHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhhhh
Confidence 000001111124455677888899999999999999999843333678999999998776653321
Q ss_pred --CCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc
Q 012436 264 --ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY 341 (464)
Q Consensus 264 --~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~ 341 (464)
....+...++++|++...||++.+++++..+.+. ++++++++|.++.. +.+++.+...++ ++|.++
T Consensus 213 ~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-----~~~~l~i~G~~~~~------~~~~~~~~~~~~-~~v~~~ 280 (394)
T cd03794 213 KELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-----PDIRFLIVGDGPEK------EELKELAKALGL-DNVTFL 280 (394)
T ss_pred hccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-----CCeEEEEeCCcccH------HHHHHHHHHcCC-CcEEEe
Confidence 1335668999999999999999999999998765 38999999988643 456665555554 589999
Q ss_pred cCCChhHHHHHHhcCcEEEEcCCCCCC-----ChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHH
Q 012436 342 KNLLYRDLVKLLGGAVVGIHSMIDEHF-----GISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYA 414 (464)
Q Consensus 342 g~~~~~~~~~~l~~ad~~v~ps~~e~~-----~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la 414 (464)
|+++++++.++|+.||++++|+..|++ |++++|||++|+|||+++.++. .+++.+ +.+|++++ |+++++
T Consensus 281 g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~-~~~~~~---~~~g~~~~~~~~~~l~ 356 (394)
T cd03794 281 GRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGES-AELVEE---AGAGLVVPPGDPEALA 356 (394)
T ss_pred CCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCc-hhhhcc---CCcceEeCCCCHHHHH
Confidence 999999999999999999999987765 7889999999999999999988 677777 68898886 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHH
Q 012436 415 DAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDF 451 (464)
Q Consensus 415 ~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~ 451 (464)
++|.++++ |++.++++++++++.+ ++|||+.+++++
T Consensus 357 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 357 AAILELLD-DPEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHHh-ChHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 99999999 9999999999999999 799999999876
No 59
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=2e-34 Score=275.13 Aligned_cols=338 Identities=24% Similarity=0.306 Sum_probs=249.0
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||+++++... +||+++++..++++|.+.|+++.+++...... ....... ... ........
T Consensus 1 kIl~~~~~~~-~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~--~~~~~~~-----~~~---~~~~~~~~--------- 60 (353)
T cd03811 1 KILFVIPSLG-GGGAERVLLNLANGLDKRGYDVTLVVLRDEGD--YLELLPS-----NVK---LIPVRVLK--------- 60 (353)
T ss_pred CeEEEeeccc-CCCcchhHHHHHHHHHhcCceEEEEEcCCCCc--ccccccc-----chh---hhceeeee---------
Confidence 6899988877 56999999999999999996666555443321 1000000 000 00000000
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEEeccc-ccccch-hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcc
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSG-YAFTYP-LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~-~~~~~~-~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~ 193 (464)
..............+.+++.+||+|+.+.. ...... +....++|+++++|......
T Consensus 61 ----~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------ 118 (353)
T cd03811 61 ----LKSLRDLLAILRLRRLLRKEKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLE------------------ 118 (353)
T ss_pred ----cccccchhHHHHHHHHHHhcCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhh------------------
Confidence 000111223445566688889999997776 332222 23233789999999433100
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCC-----CCC
Q 012436 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE-----RST 267 (464)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~-----~~~ 267 (464)
....... . ..++..++.+|.++++|+..++.+.+.++. ..++.++|||+|.+.+...... ...
T Consensus 119 ------~~~~~~~--~---~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 187 (353)
T cd03811 119 ------LKRKLRL--L---LLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPLELGIPP 187 (353)
T ss_pred ------hccchhH--H---HHHHhhccccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhhhcCCCC
Confidence 0000000 0 356777899999999999999999998875 5789999999998877643332 245
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
+.++++++|++.+.||++.++++++.+.+.. ++++|+++|.++.. +.+++.++++++.++|.+.|+. +
T Consensus 188 ~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~----~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~v~~~g~~--~ 255 (353)
T cd03811 188 DGPVILAVGRLSPQKGFDTLIRAFALLRKEG----PDARLVILGDGPLR------EELEALAKELGLADRVHFLGFQ--S 255 (353)
T ss_pred CceEEEEEecchhhcChHHHHHHHHHhhhcC----CCceEEEEcCCccH------HHHHHHHHhcCCCccEEEeccc--C
Confidence 6689999999999999999999999998774 58999999988643 6677888888988999999997 6
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHH---HHHHHHHHc
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEY---ADAIVKIIS 422 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~l---a~~i~~l~~ 422 (464)
++.++|+.||++++||..|++|++++|||++|+|||+++.++. .+++.+ +.+|++++ +++++ ++++..+.+
T Consensus 256 ~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~-~e~i~~---~~~g~~~~~~~~~~~~~~~~~i~~~~~ 331 (353)
T cd03811 256 NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGP-REILED---GENGLLVPVGDEAALAAAALALLDLLL 331 (353)
T ss_pred CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCCh-HHHhcC---CCceEEECCCCHHHHHHHHHHHHhccC
Confidence 7999999999999999999999999999999999999999988 788888 89999886 78887 677778888
Q ss_pred CCHHHHHHHHHHHHHHH-HccC
Q 012436 423 MPETERLEMAAAARRRA-ARFS 443 (464)
Q Consensus 423 ~~~~~~~~~~~~~~~~~-~~~s 443 (464)
+++.++++++++++.+ ++|+
T Consensus 332 -~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 332 -DPELRERLAAAARERVAREYS 352 (353)
T ss_pred -ChHHHHHHHHHHHHHHHHHhc
Confidence 8989999999777777 7775
No 60
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=3.4e-33 Score=274.05 Aligned_cols=280 Identities=14% Similarity=0.168 Sum_probs=215.2
Q ss_pred HHhhhcCCcEEEecccccccch-hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHH
Q 012436 134 EALCKFTPLYYFDTSGYAFTYP-LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFS 212 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~-~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (464)
+.+...++|++|.........+ +....++|.++++|.... .... ...... .+...+.
T Consensus 205 ~~L~~~~~di~i~dr~~~~~~~~~~~~~~~~~v~~lH~~h~---------------~~~~----~~~~~~---~~~~~y~ 262 (500)
T TIGR02918 205 KQLNLTKKDIIILDRSTGIGQAVLENKGPAKLGVVVHAEHF---------------SESA----TNETYI---LWNNYYE 262 (500)
T ss_pred HHHhCCCCCEEEEcCCcccchHHHhcCCCceEEEEEChhhh---------------cCcc----CcchhH---HHHHHHH
Confidence 4355568999986554333323 333668999999994221 0000 000000 0111111
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHHHhCC----CCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHH
Q 012436 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGI----PDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQL 288 (464)
Q Consensus 213 ~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~----~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll 288 (464)
.... ..+.+|.++++|+..++.+.+.++. ..++.++|+|++...+.+ . ...+...++++||+.+.||++.++
T Consensus 263 ~~~~-~~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~--~-~~r~~~~il~vGrl~~~Kg~~~li 338 (500)
T TIGR02918 263 YQFS-NADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYP--E-QERKPFSIITASRLAKEKHIDWLV 338 (500)
T ss_pred HHHh-chhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCc--c-cccCCeEEEEEeccccccCHHHHH
Confidence 1112 2477899999999999888776532 568899999986544332 1 223457899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCC
Q 012436 289 EAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHF 368 (464)
Q Consensus 289 ~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~ 368 (464)
+|+..+.+.. |+++|.|+|+|+.. ++++++++++++.++|.|.|+. ++.++|+.||++++||..|||
T Consensus 339 ~A~~~l~~~~----p~~~l~i~G~G~~~------~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~~Egf 405 (500)
T TIGR02918 339 KAVVKAKKSV----PELTFDIYGEGGEK------QKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSASTSEGF 405 (500)
T ss_pred HHHHHHHhhC----CCeEEEEEECchhH------HHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCccccc
Confidence 9999998776 79999999998643 7899999999999999999975 688899999999999999999
Q ss_pred ChHHHHHHHhCCcEEEeCCC-CCccceecccCCccceeecC-C---------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012436 369 GISVVEYMAAGAIPIAHNSA-GPKMDIVLEEDGQQTGFLAQ-N---------AEEYADAIVKIISMPETERLEMAAAARR 437 (464)
Q Consensus 369 ~~~~~Ea~a~G~PvI~~~~~-~~~~~~v~~~~~~~~g~~~~-~---------~~~la~~i~~l~~~~~~~~~~~~~~~~~ 437 (464)
|++++||||||+|||+++.+ |. .|++.+ +.+|++++ + +++++++|.++++ ++ .++++++++++
T Consensus 406 gl~~lEAma~G~PVI~~dv~~G~-~eiI~~---g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~-~~~~~~~~a~~ 479 (500)
T TIGR02918 406 GLTLMEAVGSGLGMIGFDVNYGN-PTFIED---NKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SN-DIDAFHEYSYQ 479 (500)
T ss_pred cHHHHHHHHhCCCEEEecCCCCC-HHHccC---CCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hH-HHHHHHHHHHH
Confidence 99999999999999999986 56 799999 99999986 2 8899999999985 44 68899999999
Q ss_pred HHHccCHHHHHHHHHHHHHHH
Q 012436 438 RAARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 438 ~~~~~s~~~~~~~~~~~~~~~ 458 (464)
.+++|||+.++++|.++++++
T Consensus 480 ~a~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 480 IAEGFLTANIIEKWKKLVREV 500 (500)
T ss_pred HHHhcCHHHHHHHHHHHHhhC
Confidence 889999999999999998763
No 61
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=8.6e-33 Score=268.07 Aligned_cols=222 Identities=21% Similarity=0.256 Sum_probs=193.9
Q ss_pred HHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHH
Q 012436 216 GLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVA 294 (464)
Q Consensus 216 ~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l 294 (464)
+.+++.+|.++++|+..++.+.+.++. .+++.++++|++.+.+... ...++.+.++++|++.+.||++.+++|+..+
T Consensus 178 ~~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~--~~~~~~~~il~~Grl~~~Kg~~~li~a~~~l 255 (407)
T cd04946 178 RYLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGIISK--PSKDDTLRIVSCSYLVPVKRVDLIIKALAAL 255 (407)
T ss_pred HHHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccccCC--CCCCCCEEEEEeeccccccCHHHHHHHHHHH
Confidence 455789999999999999999998876 6788999999988765532 2335668999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCCCCCCChHH
Q 012436 295 LRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDEHFGISV 372 (464)
Q Consensus 295 ~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~~e~~~~~~ 372 (464)
.+..++ .+++++++|+|+.. +.+++++++.+..++|.|+|+++++++.++|+. +|++++||..||+|+++
T Consensus 256 ~~~~p~--~~l~~~iiG~g~~~------~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~l 327 (407)
T cd04946 256 AKARPS--IKIKWTHIGGGPLE------DTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSI 327 (407)
T ss_pred HHhCCC--ceEEEEEEeCchHH------HHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHH
Confidence 887521 25677889988643 678888888777889999999999999999976 78999999999999999
Q ss_pred HHHHHhCCcEEEeCCCCCccceecccCCccceeecC---CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHH
Q 012436 373 VEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ---NAEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFY 448 (464)
Q Consensus 373 ~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~ 448 (464)
+|||++|+|||+|+.+|. .|++.+ +.+|++++ |+++++++|.++++ |++.+++|+++|++.+ ++|+|+...
T Consensus 328 lEAma~G~PVIas~vgg~-~e~i~~---~~~G~l~~~~~~~~~la~~I~~ll~-~~~~~~~m~~~ar~~~~~~f~~~~~~ 402 (407)
T cd04946 328 MEAMSFGIPVIATNVGGT-PEIVDN---GGNGLLLSKDPTPNELVSSLSKFID-NEEEYQTMREKAREKWEENFNASKNY 402 (407)
T ss_pred HHHHHcCCCEEeCCCCCc-HHHhcC---CCcEEEeCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcCHHHhH
Confidence 999999999999999998 788888 78998874 78999999999999 9999999999999999 999999999
Q ss_pred HHHH
Q 012436 449 EDFK 452 (464)
Q Consensus 449 ~~~~ 452 (464)
+++.
T Consensus 403 ~~~~ 406 (407)
T cd04946 403 REFA 406 (407)
T ss_pred HHhc
Confidence 8875
No 62
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=7e-32 Score=258.85 Aligned_cols=251 Identities=18% Similarity=0.233 Sum_probs=187.5
Q ss_pred hhhcCCcEEEecccccccc--h---hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHH
Q 012436 136 LCKFTPLYYFDTSGYAFTY--P---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTF 210 (464)
Q Consensus 136 l~~~~~Dvv~~~~~~~~~~--~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (464)
.+..+||+||.++...... . +++..++|+|+++|.... ... .. . ........+.
T Consensus 96 ~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~--~~~-~~----------------~--~~~~~~~~~~ 154 (371)
T PLN02275 96 VKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGY--TLL-AL----------------S--LGRSHPLVRL 154 (371)
T ss_pred hhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccH--HHH-hc----------------c--cCCCCHHHHH
Confidence 3567999999765443221 1 444678999999993210 000 00 0 0001123445
Q ss_pred HHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCC---CCCCCcEEEEEeccCCCCChHHH
Q 012436 211 FSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE---RSTEYPAIISVAQFRPEKAHPLQ 287 (464)
Q Consensus 211 ~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~---~~~~~~~i~~~G~~~~~K~~~~l 287 (464)
+.++++.+++.+|.++++|+.+++.+.+.++.+ +.+++|+. .+.+.+.... ..++...++++|++.+.||++.+
T Consensus 155 ~~~~e~~~~~~ad~ii~~S~~~~~~l~~~~g~~--i~vi~n~~-~~~f~~~~~~~~~~~~~~~~i~~~grl~~~k~~~~l 231 (371)
T PLN02275 155 YRWYERHYGKMADGHLCVTKAMQHELDQNWGIR--ATVLYDQP-PEFFRPASLEIRLRPNRPALVVSSTSWTPDEDFGIL 231 (371)
T ss_pred HHHHHHHHHhhCCEEEECCHHHHHHHHHhcCCC--eEEECCCC-HHHcCcCCchhcccCCCcEEEEEeCceeccCCHHHH
Confidence 667788889999999999999999998766543 88999984 3444322111 11334578899999999999999
Q ss_pred HHHHHHHHHHhc-------------CCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc-CCChhHHHHHH
Q 012436 288 LEAFSVALRKLD-------------ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK-NLLYRDLVKLL 353 (464)
Q Consensus 288 l~a~~~l~~~~~-------------~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~~~~~~~~~l 353 (464)
++|+..+..... ...|+++|+++|+|+.. +++++.++++++.+ +.|.+ +++.+++.++|
T Consensus 232 i~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~------~~l~~~~~~~~l~~-v~~~~~~~~~~~~~~~l 304 (371)
T PLN02275 232 LEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQK------AMYEEKISRLNLRH-VAFRTMWLEAEDYPLLL 304 (371)
T ss_pred HHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCCH------HHHHHHHHHcCCCc-eEEEcCCCCHHHHHHHH
Confidence 999988742110 01268999999999864 78999999999875 77765 68999999999
Q ss_pred hcCcEEEEcC---CCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHH
Q 012436 354 GGAVVGIHSM---IDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKII 421 (464)
Q Consensus 354 ~~ad~~v~ps---~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~ 421 (464)
+.||++++|+ ..|++|++++||||||+|||+++.++. .|++.+ +.+|++++++++++++|.+++
T Consensus 305 ~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~-~eiv~~---g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 305 GSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI-GELVKD---GKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred HhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCCh-HHHccC---CCCeEEECCHHHHHHHHHHhC
Confidence 9999999763 248899999999999999999999887 799999 899999999999999998774
No 63
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=2.8e-30 Score=249.73 Aligned_cols=276 Identities=10% Similarity=0.045 Sum_probs=198.4
Q ss_pred hhhhHHHHHHhhhcCCcEEEecccccccch-----hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhh
Q 012436 126 FGSVYLSWEALCKFTPLYYFDTSGYAFTYP-----LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWL 200 (464)
Q Consensus 126 ~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~-----~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (464)
+..+-...+.+..++|||||.......... .++..+ |+|..+|.... .++.. | ..
T Consensus 420 I~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVasyHTny~-----eYl~~----y----------~~ 479 (794)
T PLN02501 420 IIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYL-----EYIKR----E----------KN 479 (794)
T ss_pred ccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcC-CeEEEEeCCcH-----HHHhH----h----------cc
Confidence 333455667789999999996554333222 566777 89999995331 11110 0 01
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCC-------CCCCCcEEE
Q 012436 201 SQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE-------RSTEYPAII 273 (464)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~-------~~~~~~~i~ 273 (464)
........+...++.+... ||.++++|..+++ + + .......+|||.+.|.+.... .......++
T Consensus 480 g~L~~~llk~l~~~v~r~h--cD~VIaPS~atq~-L----~--~~vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kgiL 550 (794)
T PLN02501 480 GALQAFFVKHINNWVTRAY--CHKVLRLSAATQD-L----P--KSVICNVHGVNPKFLKIGEKVAEERELGQQAFSKGAY 550 (794)
T ss_pred hhHHHHHHHHHHHHHHHhh--CCEEEcCCHHHHH-h----c--ccceeecccccccccCCcchhHHHHhcCCccccCceE
Confidence 1122222222222222222 8999999977773 3 1 222222369999988743211 011224589
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHH
Q 012436 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLL 353 (464)
Q Consensus 274 ~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l 353 (464)
|+||+.+.||++.+++|++.+.... |+++|+|+|+|+.. ++++++++++++ +|.|+|.. ++..++|
T Consensus 551 fVGRLa~EKGld~LLeAla~L~~~~----pnvrLvIVGDGP~r------eeLe~la~eLgL--~V~FLG~~--dd~~~ly 616 (794)
T PLN02501 551 FLGKMVWAKGYRELIDLLAKHKNEL----DGFNLDVFGNGEDA------HEVQRAAKRLDL--NLNFLKGR--DHADDSL 616 (794)
T ss_pred EEEcccccCCHHHHHHHHHHHHhhC----CCeEEEEEcCCccH------HHHHHHHHHcCC--EEEecCCC--CCHHHHH
Confidence 9999999999999999999987765 68999999999864 778888888887 48999998 6667899
Q ss_pred hcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHHHH
Q 012436 354 GGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEMAA 433 (464)
Q Consensus 354 ~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~~~ 433 (464)
+.+|+|++||..|+||++++||||||+|||+++.++. +++.+ +.+|++++|+++++++|.++++ ++..+..+.+
T Consensus 617 asaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~--e~V~~---g~nGll~~D~EafAeAI~~LLs-d~~~rl~~~a 690 (794)
T PLN02501 617 HGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSN--EFFRS---FPNCLTYKTSEDFVAKVKEALA-NEPQPLTPEQ 690 (794)
T ss_pred HhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCC--ceEee---cCCeEecCCHHHHHHHHHHHHh-CchhhhHHHH
Confidence 9999999999999999999999999999999999875 44666 7888888899999999999999 8764433321
Q ss_pred HHHHHHHccCHHHHHHHHHHHH
Q 012436 434 AARRRAARFSEQRFYEDFKAAI 455 (464)
Q Consensus 434 ~~~~~~~~~s~~~~~~~~~~~~ 455 (464)
...+||+.+++++++.-
T Consensus 691 -----~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 691 -----RYNLSWEAATQRFMEYS 707 (794)
T ss_pred -----HhhCCHHHHHHHHHHhh
Confidence 35899999999998754
No 64
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=100.00 E-value=2.5e-31 Score=256.62 Aligned_cols=272 Identities=21% Similarity=0.249 Sum_probs=215.3
Q ss_pred hcCCcEEEecccccccch-hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHH
Q 012436 138 KFTPLYYFDTSGYAFTYP-LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYG 216 (464)
Q Consensus 138 ~~~~Dvv~~~~~~~~~~~-~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
..++|++|++........ +......+.++++|....... .......+...+.. . .
T Consensus 97 ~~~~diii~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------------------~~~~~~~~~~~~~~----~-~ 152 (372)
T cd04949 97 DTKPDVFILDRPTLDGQALLNMKKAAKVVVVLHSNHVSDN-------------------NDPVHSLINNFYEY----V-F 152 (372)
T ss_pred CCCCCEEEECCccccchhHHhccCCceEEEEEChHHhCCc-------------------ccccccccchhhHH----H-H
Confidence 378999997766554433 333456678888884321000 00000001111111 1 1
Q ss_pred HHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHH
Q 012436 217 LVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALR 296 (464)
Q Consensus 217 ~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~ 296 (464)
..++.+|.+++.|+..++.+.+.++...++.++|+|++.+.+...+ ....+...++++|++.+.||++.+++++..+.+
T Consensus 153 ~~~~~~d~ii~~s~~~~~~l~~~~~~~~~v~~ip~g~~~~~~~~~~-~~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~ 231 (372)
T cd04949 153 ENLDKVDGVIVATEQQKQDLQKQFGNYNPIYTIPVGSIDPLKLPAQ-FKQRKPHKIITVARLAPEKQLDQLIKAFAKVVK 231 (372)
T ss_pred hChhhCCEEEEccHHHHHHHHHHhCCCCceEEEcccccChhhcccc-hhhcCCCeEEEEEccCcccCHHHHHHHHHHHHH
Confidence 2247899999999999999999887655689999999987665321 123455789999999999999999999999988
Q ss_pred HhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHH
Q 012436 297 KLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM 376 (464)
Q Consensus 297 ~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~ 376 (464)
+. |+++|+++|.++.. ..++..++++++.++|.+.|+. +++.++|+.||++++||..|++|++++|||
T Consensus 232 ~~----~~~~l~i~G~g~~~------~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAm 299 (372)
T cd04949 232 QV----PDATLDIYGYGDEE------EKLKELIEELGLEDYVFLKGYT--RDLDEVYQKAQLSLLTSQSEGFGLSLMEAL 299 (372)
T ss_pred hC----CCcEEEEEEeCchH------HHHHHHHHHcCCcceEEEcCCC--CCHHHHHhhhhEEEecccccccChHHHHHH
Confidence 76 69999999998643 5677777888989999999965 889999999999999999999999999999
Q ss_pred HhCCcEEEeCCC-CCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHH
Q 012436 377 AAGAIPIAHNSA-GPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDF 451 (464)
Q Consensus 377 a~G~PvI~~~~~-~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 451 (464)
++|+|||+++.+ |. .+++.+ +.+|++++ |+++++++|.++++ |++.++++++++++.+++|||+.++++|
T Consensus 300 a~G~PvI~~~~~~g~-~~~v~~---~~~G~lv~~~d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 300 SHGLPVISYDVNYGP-SEIIED---GENGYLVPKGDIEALAEAIIELLN-DPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred hCCCCEEEecCCCCc-HHHccc---CCCceEeCCCcHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 999999999987 55 788888 89999997 99999999999999 9999999999999999999999998864
No 65
>PHA01630 putative group 1 glycosyl transferase
Probab=99.97 E-value=5.7e-30 Score=239.13 Aligned_cols=217 Identities=12% Similarity=0.098 Sum_probs=169.9
Q ss_pred HHH-hhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHH
Q 012436 216 GLV-GSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSV 293 (464)
Q Consensus 216 ~~~-~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~ 293 (464)
... .+.+|.++++|+.+++.+.+.+.. ++++.+||||+|.+.+.+... ...+..+++++|++.+.||++.+++|++.
T Consensus 88 ~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~~~~~-~~~~~~vl~~~g~~~~~Kg~d~Li~A~~~ 166 (331)
T PHA01630 88 YFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYKPK-EKPHPCVLAILPHSWDRKGGDIVVKIFHE 166 (331)
T ss_pred HHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcCCCcc-ccCCCEEEEEeccccccCCHHHHHHHHHH
Confidence 444 588999999999999999876422 468999999999887764322 22344567778888999999999999999
Q ss_pred HHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHH
Q 012436 294 ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVV 373 (464)
Q Consensus 294 l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~ 373 (464)
+.++. ++++++++|++... ..+. ++. .+.|.++.+++.++|+.||++++||..|+||++++
T Consensus 167 l~~~~----~~~~llivG~~~~~------~~l~------~~~---~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~l 227 (331)
T PHA01630 167 LQNEG----YDFYFLIKSSNMLD------PRLF------GLN---GVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVI 227 (331)
T ss_pred HHhhC----CCEEEEEEeCcccc------hhhc------ccc---ceeccCCHHHHHHHHHhCCEEEECCccccCChHHH
Confidence 98765 58999999965422 1111 121 13567899999999999999999999999999999
Q ss_pred HHHHhCCcEEEeCCCCCccceecccCCcccee--------------------ecC-CHHHHHHHHHHHHcCCH--HHHHH
Q 012436 374 EYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGF--------------------LAQ-NAEEYADAIVKIISMPE--TERLE 430 (464)
Q Consensus 374 Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~--------------------~~~-~~~~la~~i~~l~~~~~--~~~~~ 430 (464)
||||||+|||+|+.+|. .|++.+ +.+|+ +++ |.+++++++.+++. |+ +.+++
T Consensus 228 EAMA~G~PVIas~~gg~-~E~i~~---~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~-~~~~~~~~~ 302 (331)
T PHA01630 228 EALALGLDVVVTEKGAW-SEWVLS---NLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALA-NWTPEKKKE 302 (331)
T ss_pred HHHHcCCCEEEeCCCCc-hhhccC---CCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHh-CCCHHHHHH
Confidence 99999999999999987 688877 65544 444 78899999999888 73 44444
Q ss_pred -HHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012436 431 -MAAAARRRAARFSEQRFYEDFKAAIRP 457 (464)
Q Consensus 431 -~~~~~~~~~~~~s~~~~~~~~~~~~~~ 457 (464)
+..+++...++|||+.+++++.++|++
T Consensus 303 ~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 303 NLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 444444444999999999999999874
No 66
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.96 E-value=2.9e-28 Score=233.58 Aligned_cols=338 Identities=13% Similarity=0.106 Sum_probs=228.9
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
+|||+++.... ||.++++.+++++|.+.||++ .+++...+ ...... ...++ +++.++.......
T Consensus 1 ~~~i~i~~~g~---gG~~~~~~~la~~L~~~g~ev--~vv~~~~~----~~~~~~-~~~g~------~~~~~~~~~~~~~ 64 (357)
T PRK00726 1 MKKILLAGGGT---GGHVFPALALAEELKKRGWEV--LYLGTARG----MEARLV-PKAGI------EFHFIPSGGLRRK 64 (357)
T ss_pred CcEEEEEcCcc---hHhhhHHHHHHHHHHhCCCEE--EEEECCCc----hhhhcc-ccCCC------cEEEEeccCcCCC
Confidence 38999875544 699999999999999999555 44444321 000000 00122 4444433211111
Q ss_pred ccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCC
Q 012436 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~ 191 (464)
....+......++....++.+.+++.+||+||++........ .++..++|+|++.|...
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------- 125 (357)
T PRK00726 65 GSLANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV------------------- 125 (357)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC-------------------
Confidence 111111122233555667777889999999998875544332 45578899998655210
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC----CCCC
Q 012436 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL----ERST 267 (464)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~----~~~~ 267 (464)
.. ...++.++.+|.+++.++... .+ ....++.+++||++.+.+..... ...+
T Consensus 126 --------~~-----------~~~r~~~~~~d~ii~~~~~~~---~~--~~~~~i~vi~n~v~~~~~~~~~~~~~~~~~~ 181 (357)
T PRK00726 126 --------PG-----------LANKLLARFAKKVATAFPGAF---PE--FFKPKAVVTGNPVREEILALAAPPARLAGRE 181 (357)
T ss_pred --------cc-----------HHHHHHHHHhchheECchhhh---hc--cCCCCEEEECCCCChHhhcccchhhhccCCC
Confidence 00 123455578899999887542 22 23689999999998765542111 1123
Q ss_pred CCcEEEEEeccCCCCChHHHH-HHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 268 EYPAIISVAQFRPEKAHPLQL-EAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll-~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
+.+.++++|+....|+...++ +|+.++.+. + ..++++|++.. +++.+..+ +++. |.+.|++
T Consensus 182 ~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-----~-~~~~~~G~g~~-------~~~~~~~~-~~~~--v~~~g~~-- 243 (357)
T PRK00726 182 GKPTLLVVGGSQGARVLNEAVPEALALLPEA-----L-QVIHQTGKGDL-------EEVRAAYA-AGIN--AEVVPFI-- 243 (357)
T ss_pred CCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-----c-EEEEEcCCCcH-------HHHHHHhh-cCCc--EEEeehH--
Confidence 557888999888888776555 888877432 2 45778898852 44444445 6653 9999999
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc-------cceecccCCccceeecC--C--HHHHHH
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK-------MDIVLEEDGQQTGFLAQ--N--AEEYAD 415 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~-------~~~v~~~~~~~~g~~~~--~--~~~la~ 415 (464)
+++.++|+.||+++.++ .+.+++|||++|+|+|+++.++.. .+.+.+ .++|++++ | ++++++
T Consensus 244 ~~~~~~~~~~d~~i~~~----g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~---~~~g~~~~~~~~~~~~l~~ 316 (357)
T PRK00726 244 DDMAAAYAAADLVICRA----GASTVAELAAAGLPAILVPLPHAADDHQTANARALVD---AGAALLIPQSDLTPEKLAE 316 (357)
T ss_pred hhHHHHHHhCCEEEECC----CHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH---CCCEEEEEcccCCHHHHHH
Confidence 89999999999999865 268899999999999998764321 134555 67888775 4 999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 416 AIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 416 ~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
+|.++++ |++.++++++++++.++.++.+.+++.+.++++
T Consensus 317 ~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 317 KLLELLS-DPERLEAMAEAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHHc-CHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhh
Confidence 9999999 999999999999988888999999998888764
No 67
>PHA01633 putative glycosyl transferase group 1
Probab=99.96 E-value=3.2e-27 Score=217.53 Aligned_cols=214 Identities=16% Similarity=0.166 Sum_probs=163.7
Q ss_pred hcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCC----------CCCCCcEEEEEeccCCCCChHHHHH
Q 012436 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE----------RSTEYPAIISVAQFRPEKAHPLQLE 289 (464)
Q Consensus 220 ~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~----------~~~~~~~i~~~G~~~~~K~~~~ll~ 289 (464)
.+.+.+|++|+.+++.+.+. |.+..+ .|++|+|.+.|.+.... ..++.+.++++||+.++||++.+++
T Consensus 91 ~~~~~vIavS~~t~~~L~~~-G~~~~i-~I~~GVD~~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~ 168 (335)
T PHA01633 91 LQDVKFIPNSKFSAENLQEV-GLQVDL-PVFHGINFKIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQ 168 (335)
T ss_pred hcCCEEEeCCHHHHHHHHHh-CCCCce-eeeCCCChhhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHH
Confidence 44669999999999999876 544444 47889998877642210 0135578999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhcCcEEEEcCCCC
Q 012436 290 AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGAVVGIHSMIDE 366 (464)
Q Consensus 290 a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~ad~~v~ps~~e 366 (464)
|++.+.++..+..++++++++|.+ . .+++++.++|+|. |+++.+++.++|++||++++||..|
T Consensus 169 A~~~L~~~~p~~~~~i~l~ivG~~----------~----~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~E 234 (335)
T PHA01633 169 VFNELNTKYPDIAKKIHFFVISHK----------Q----FTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTE 234 (335)
T ss_pred HHHHHHHhCCCccccEEEEEEcHH----------H----HHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccc
Confidence 999998765211113578777731 1 2345677899998 5667899999999999999999999
Q ss_pred CCChHHHHHHHhCCcEEEeCCCCCccceecc---------------cCCccceeecC--CHHHHHHHHHHHHcCCHHHHH
Q 012436 367 HFGISVVEYMAAGAIPIAHNSAGPKMDIVLE---------------EDGQQTGFLAQ--NAEEYADAIVKIISMPETERL 429 (464)
Q Consensus 367 ~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~---------------~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~ 429 (464)
+||++++|||+||+|||+++.++. .|++.+ ....+.||.++ |+++++++|.+++. .. ...
T Consensus 235 gfGlvlLEAMA~G~PVVas~~~~l-~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~-~~-~~~ 311 (335)
T PHA01633 235 GFGMPVLESMAMGTPVIHQLMPPL-DEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFE-LQ-DRE 311 (335)
T ss_pred cCCHHHHHHHHcCCCEEEccCCCc-eeecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHh-cc-Chh
Confidence 999999999999999999999877 565331 00124567765 99999999999976 32 233
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH
Q 012436 430 EMAAAARRRAARFSEQRFYEDFK 452 (464)
Q Consensus 430 ~~~~~~~~~~~~~s~~~~~~~~~ 452 (464)
..+.++++.+++|+|+.++++|+
T Consensus 312 ~~~~~~~~~a~~f~~~~~~~~~~ 334 (335)
T PHA01633 312 ERSMKLKELAKKYDIRNLYTRFL 334 (335)
T ss_pred hhhHHHHHHHHhcCHHHHHHHhh
Confidence 34667888889999999999986
No 68
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.96 E-value=6.6e-26 Score=222.11 Aligned_cols=335 Identities=16% Similarity=0.104 Sum_probs=221.9
Q ss_pred CcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccccCcceehhhhchhh
Q 012436 49 GGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGS 128 (464)
Q Consensus 49 G~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (464)
|-...+..++++|.+.++++++++.+... ........ .++. .+.+.+++.. .
T Consensus 61 Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~--~~~~~~~~---~~~~----~~~~~~~P~d-------------------~ 112 (425)
T PRK05749 61 GETRAAIPLIRALRKRYPDLPILVTTMTP--TGSERAQA---LFGD----DVEHRYLPYD-------------------L 112 (425)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEeCCCc--cHHHHHHH---hcCC----CceEEEecCC-------------------c
Confidence 67888899999999998888876654332 11222211 1111 1122222221 1
Q ss_pred hHHHHHHhhhcCCcEEEeccc--ccccchhhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHH
Q 012436 129 VYLSWEALCKFTPLYYFDTSG--YAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIV 206 (464)
Q Consensus 129 ~~~~~~~l~~~~~Dvv~~~~~--~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (464)
...+.+.++..+||++|.+.. ++..+..++..++|++++.|.-. ... ..
T Consensus 113 ~~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~~~~-----------------------~~s------~~ 163 (425)
T PRK05749 113 PGAVRRFLRFWRPKLVIIMETELWPNLIAELKRRGIPLVLANARLS-----------------------ERS------FK 163 (425)
T ss_pred HHHHHHHHHhhCCCEEEEEecchhHHHHHHHHHCCCCEEEEeccCC-----------------------hhh------HH
Confidence 234556688999999985533 22232345678999988755110 000 00
Q ss_pred HHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCC---------CCCCCcEEEEEe
Q 012436 207 YYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE---------RSTEYPAIISVA 276 (464)
Q Consensus 207 ~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~---------~~~~~~~i~~~G 276 (464)
.++.+.++.+.+++.+|.+++.|+..++.+.+. |. ++ +.+++|. +.+........ ..++.++++++|
T Consensus 164 ~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~~~-g~~~~-i~vi~n~-~~d~~~~~~~~~~~~~~r~~~~~~~~vil~~~ 240 (425)
T PRK05749 164 RYQKFKRFYRLLFKNIDLVLAQSEEDAERFLAL-GAKNE-VTVTGNL-KFDIEVPPELAARAATLRRQLAPNRPVWIAAS 240 (425)
T ss_pred HHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHc-CCCCC-cEecccc-cccCCCChhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 112334566778899999999999999999886 44 34 7788874 22222110000 003456778877
Q ss_pred ccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC------------
Q 012436 277 QFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL------------ 344 (464)
Q Consensus 277 ~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~------------ 344 (464)
+ ..|+.+.+++|++.+.+.. |+++|+|+|+++++ .+++++.++++|+. .+.+.|..
T Consensus 241 ~--~~~~~~~ll~A~~~l~~~~----~~~~liivG~g~~r-----~~~l~~~~~~~gl~-~~~~~~~~~~~~~~~v~l~~ 308 (425)
T PRK05749 241 T--HEGEEELVLDAHRALLKQF----PNLLLILVPRHPER-----FKEVEELLKKAGLS-YVRRSQGEPPSADTDVLLGD 308 (425)
T ss_pred C--CchHHHHHHHHHHHHHHhC----CCcEEEEcCCChhh-----HHHHHHHHHhCCCc-EEEccCCCCCCCCCcEEEEe
Confidence 5 4678999999999987765 69999999998642 25788888888875 34443321
Q ss_pred ChhHHHHHHhcCcEEEE-cCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeec--CCHHHHHHHHHHHH
Q 012436 345 LYRDLVKLLGGAVVGIH-SMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLA--QNAEEYADAIVKII 421 (464)
Q Consensus 345 ~~~~~~~~l~~ad~~v~-ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~--~~~~~la~~i~~l~ 421 (464)
+.+|+..+|+.||++++ +|..|++|.+++|||+||+|||+++..+...++...- ..+|+++ .|+++++++|.+++
T Consensus 309 ~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~--~~~g~~~~~~d~~~La~~l~~ll 386 (425)
T PRK05749 309 TMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL--LQAGAAIQVEDAEDLAKAVTYLL 386 (425)
T ss_pred cHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH--HHCCCeEEECCHHHHHHHHHHHh
Confidence 13799999999999655 6677999999999999999999987543324554330 1245443 59999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 012436 422 SMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
+ |++.+++|++++++.++.. ....+++.+.+.+.+.
T Consensus 387 ~-~~~~~~~m~~~a~~~~~~~--~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 387 T-DPDARQAYGEAGVAFLKQN--QGALQRTLQLLEPYLP 422 (425)
T ss_pred c-CHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHhcc
Confidence 9 9999999999999998433 3566777777766554
No 69
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=6.5e-27 Score=226.00 Aligned_cols=357 Identities=11% Similarity=0.008 Sum_probs=222.8
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWI 111 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (464)
.+.|||++++... |+|....+..++++|.+.|++ ++.+........+.+.......+...+......+.+.....
T Consensus 2 ~~~~rili~t~~~--G~GH~~~a~al~~~l~~~g~~--~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~- 76 (380)
T PRK13609 2 IKNPKVLILTAHY--GNGHVQVAKTLEQTFRQKGIK--DVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGV- 76 (380)
T ss_pred CCCCeEEEEEcCC--CchHHHHHHHHHHHHHhcCCC--cEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhcc-
Confidence 4668999998776 568999999999999999965 33333222111111110000000000000000000000000
Q ss_pred ccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhh--ccCceEEEEeeCCcchhhhhhcccccccccC
Q 012436 112 EESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLAR--IFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (464)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~--~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~ 189 (464)
...................+.+.+++.+||+||++.+......+.+ ..++|++...++...
T Consensus 77 -~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~~~---------------- 139 (380)
T PRK13609 77 -EKIYDKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDFCL---------------- 139 (380)
T ss_pred -CcccchHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCCCC----------------
Confidence 0000000000001122356777889999999998765443222222 456887754431100
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCC-------
Q 012436 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP------- 262 (464)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~------- 262 (464)
..+++.+++|.+++.|+..++.+.+.+..++++.+++++++.......+
T Consensus 140 ------------------------~~~~~~~~ad~i~~~s~~~~~~l~~~gi~~~ki~v~G~p~~~~f~~~~~~~~~~~~ 195 (380)
T PRK13609 140 ------------------------HKIWVHREVDRYFVATDHVKKVLVDIGVPPEQVVETGIPIRSSFELKINPDIIYNK 195 (380)
T ss_pred ------------------------CcccccCCCCEEEECCHHHHHHHHHcCCChhHEEEECcccChHHcCcCCHHHHHHH
Confidence 0123458899999999999999988633366888887776543211110
Q ss_pred CCCCCC-CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc
Q 012436 263 LERSTE-YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY 341 (464)
Q Consensus 263 ~~~~~~-~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~ 341 (464)
....++ ...+++.|+....|+++.+++++... |+++++++|++.. ...+++++.+++++ ++|+++
T Consensus 196 ~~l~~~~~~il~~~G~~~~~k~~~~li~~l~~~--------~~~~~viv~G~~~----~~~~~l~~~~~~~~--~~v~~~ 261 (380)
T PRK13609 196 YQLCPNKKILLIMAGAHGVLGNVKELCQSLMSV--------PDLQVVVVCGKNE----ALKQSLEDLQETNP--DALKVF 261 (380)
T ss_pred cCCCCCCcEEEEEcCCCCCCcCHHHHHHHHhhC--------CCcEEEEEeCCCH----HHHHHHHHHHhcCC--CcEEEE
Confidence 011123 34556678888889999988887532 4789888754321 23467777776654 689999
Q ss_pred cCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC-CCCCcc---ceecccCCccceeecCCHHHHHHHH
Q 012436 342 KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN-SAGPKM---DIVLEEDGQQTGFLAQNAEEYADAI 417 (464)
Q Consensus 342 g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~-~~~~~~---~~v~~~~~~~~g~~~~~~~~la~~i 417 (464)
|++ +++.++|+.||+++. ++.|++++|||++|+|+|+++ .+|... +.+.+ .+.++...|+++++++|
T Consensus 262 g~~--~~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~---~G~~~~~~~~~~l~~~i 332 (380)
T PRK13609 262 GYV--ENIDELFRVTSCMIT----KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER---KGAAVVIRDDEEVFAKT 332 (380)
T ss_pred ech--hhHHHHHHhccEEEe----CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh---CCcEEEECCHHHHHHHH
Confidence 999 679999999999884 455899999999999999986 444311 12222 34455556999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 012436 418 VKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 418 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 458 (464)
.++++ |++.+++|++++++..+.++++.+++.+.+.+...
T Consensus 333 ~~ll~-~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 333 EALLQ-DDMKLLQMKEAMKSLYLPEPADHIVDDILAENHVE 372 (380)
T ss_pred HHHHC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhhhh
Confidence 99999 99999999999988777789999999999887653
No 70
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.95 E-value=1.1e-26 Score=222.25 Aligned_cols=330 Identities=17% Similarity=0.141 Sum_probs=216.7
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||++..... ||.++++..++++|.+.|| +|.+++.... . ... .... .+++++.++.........
T Consensus 1 ~~~~~~~~~---gG~~~~~~~la~~l~~~G~--ev~v~~~~~~---~-~~~-~~~~------~~~~~~~~~~~~~~~~~~ 64 (350)
T cd03785 1 RILIAGGGT---GGHIFPALALAEELRERGA--EVLFLGTKRG---L-EAR-LVPK------AGIPLHTIPVGGLRRKGS 64 (350)
T ss_pred CEEEEecCc---hhhhhHHHHHHHHHHhCCC--EEEEEECCCc---c-hhh-cccc------cCCceEEEEecCcCCCCh
Confidence 355543333 6999999999999999995 4445554321 0 000 0000 112444443321111111
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcc
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~ 193 (464)
+..+......+.....+.+.+++.+||+||+++....... .++..++|++++.|+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~--------------------- 123 (350)
T cd03785 65 LKKLKAPFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAV--------------------- 123 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCC---------------------
Confidence 1111111222344455667788899999998765443222 45578899987555210
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCC----CCCCCCC
Q 012436 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP----LERSTEY 269 (464)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~----~~~~~~~ 269 (464)
.. ...+...+.+|.++++|+...+. .+ +.++.+++||+|.+.+...+ ...+++.
T Consensus 124 ------~~-----------~~~~~~~~~~~~vi~~s~~~~~~----~~-~~~~~~i~n~v~~~~~~~~~~~~~~~~~~~~ 181 (350)
T cd03785 124 ------PG-----------LANRLLARFADRVALSFPETAKY----FP-KDKAVVTGNPVREEILALDRERARLGLRPGK 181 (350)
T ss_pred ------cc-----------HHHHHHHHhhCEEEEcchhhhhc----CC-CCcEEEECCCCchHHhhhhhhHHhcCCCCCC
Confidence 00 11244457799999999998876 22 67899999999977654321 1223455
Q ss_pred cEEEEEeccCCCCChHH-HHHHHHHHHHHhcCCCCCcE-EEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 270 PAIISVAQFRPEKAHPL-QLEAFSVALRKLDADLPRPR-LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 270 ~~i~~~G~~~~~K~~~~-ll~a~~~l~~~~~~~~p~~~-l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
+++++.|+....|+... ++++++.+.. ++++ ++++|.+ . .+++++.++++ .++|++.|++ +
T Consensus 182 ~~i~~~~g~~~~~~~~~~l~~a~~~l~~------~~~~~~~i~G~g-~------~~~l~~~~~~~--~~~v~~~g~~--~ 244 (350)
T cd03785 182 PTLLVFGGSQGARAINEAVPEALAELLR------KRLQVIHQTGKG-D------LEEVKKAYEEL--GVNYEVFPFI--D 244 (350)
T ss_pred eEEEEECCcHhHHHHHHHHHHHHHHhhc------cCeEEEEEcCCc-c------HHHHHHHHhcc--CCCeEEeehh--h
Confidence 67878877766777654 5588887753 2555 4466776 2 25566666665 4689999998 8
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC-------ccceecccCCccceeecC----CHHHHHHH
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP-------KMDIVLEEDGQQTGFLAQ----NAEEYADA 416 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~-------~~~~v~~~~~~~~g~~~~----~~~~la~~ 416 (464)
++.++|+.||+++.++. +++++|||++|+|+|+++.++. ..+.+.+ +++|++++ |+++++++
T Consensus 245 ~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~---~g~g~~v~~~~~~~~~l~~~ 317 (350)
T cd03785 245 DMAAAYAAADLVISRAG----ASTVAELAALGLPAILIPLPYAADDHQTANARALVK---AGAAVLIPQEELTPERLAAA 317 (350)
T ss_pred hHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh---CCCEEEEecCCCCHHHHHHH
Confidence 99999999999997652 6889999999999999876531 0234455 57888875 79999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHH
Q 012436 417 IVKIISMPETERLEMAAAARRRAARFSEQRFYE 449 (464)
Q Consensus 417 i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 449 (464)
|.++++ |++.++++++++++.++.+..+++++
T Consensus 318 i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (350)
T cd03785 318 LLELLS-DPERLKAMAEAARSLARPDAAERIAD 349 (350)
T ss_pred HHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHh
Confidence 999999 99999999999998877777776654
No 71
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.95 E-value=4.8e-26 Score=214.02 Aligned_cols=394 Identities=23% Similarity=0.270 Sum_probs=271.2
Q ss_pred cccccccceEEEecCCCCCCCCcchhhHHHHHHhhh---------hCCCCceEEEcccCCCCchh-HHHHHHhhcCcccC
Q 012436 28 NARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQE---------ESPDLDCIVYTGDHDAFPDS-LLARAVDRFGVELL 97 (464)
Q Consensus 28 ~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~---------~g~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 97 (464)
.......+++.+.|+..+.| |+++-..+.+-.+.. .| ..|++++...+....+ ........+....
T Consensus 28 ~t~~~~~~~~~~~~~~~~~g-g~er~~v~~~~~l~s~~~~lg~~d~G--~qV~~l~~h~~al~~~~~~~~~~~~l~~~~- 103 (495)
T KOG0853|consen 28 STPEKPFEHVTFIHPDLGIG-GAERLVVDAAVHLLSGQDVLGLPDTG--GQVVYLTSHEDALEMPLLLRCFAETLDGTP- 103 (495)
T ss_pred ccccccchhheeeccccccC-chHHHhHHHHHHHHhcccccCCCCCC--ceEEEEehhhhhhcchHHHHHHHHHhcCCC-
Confidence 34455668999999998877 999998888888888 99 5555666544322111 1122222222211
Q ss_pred CCceeeeeeccccccccc--CcceehhhhchhhhH----HHHHHhhhcCCcEEEecccccccchhhh-cc----CceEEE
Q 012436 98 HPPKVVHLYRRKWIEEST--YPRFTMIGQSFGSVY----LSWEALCKFTPLYYFDTSGYAFTYPLAR-IF----GCRVIC 166 (464)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~l~~~~~Dvv~~~~~~~~~~~~~~-~~----~~p~v~ 166 (464)
++.++ ..|.+... +.+.....+....+. .+.+.. .+.|+++.... ....++.+ .. ...+.+
T Consensus 104 -~i~vv----~~~lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~--~~~d~~i~d~~-~~~~~l~~~~~~p~~~~~i~~ 175 (495)
T KOG0853|consen 104 -PILVV----GDWLPRAMGQFLEQVAGCAYLRILRIPFGILFKWA--EKVDPIIEDFV-SACVPLLKQLSGPDVIIKIYF 175 (495)
T ss_pred -ceEEE----EeecCcccchhhhhhhccceeEEEEeccchhhhhh--hhhceeecchH-HHHHHHHHHhcCCcccceeEE
Confidence 22222 11111111 111111111111111 111122 46787774333 22334444 33 366778
Q ss_pred EeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC--CC
Q 012436 167 YTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI--PD 244 (464)
Q Consensus 167 ~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~--~~ 244 (464)
++|.|.. .+. .........++..+.+.+......+|.+++.|......++..+.. ..
T Consensus 176 ~~h~~~~------lla---------------~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~ 234 (495)
T KOG0853|consen 176 YCHFPDS------LLA---------------KRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNS 234 (495)
T ss_pred eccchHH------Hhc---------------cccCccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCC
Confidence 8896641 111 111233445666777778888899999999999999999887755 44
Q ss_pred CeEEecCCCCCCCCcc------CCCC--------CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcC-CCCCcEEEE
Q 012436 245 RIKRVYPPCDTSGLQV------LPLE--------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDA-DLPRPRLQF 309 (464)
Q Consensus 245 ~i~~i~~~~d~~~~~~------~~~~--------~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~-~~p~~~l~i 309 (464)
++.++++++|.+.+.. .... ....+..+.-+.++.+.||++.+++++..+.+...+ ..++.++.+
T Consensus 235 d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~ 314 (495)
T KOG0853|consen 235 DITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVV 314 (495)
T ss_pred CcceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEE
Confidence 4888999998765441 0000 112346777888999999999999999998877632 234678888
Q ss_pred EcCC----CCCccHHHHHHHHHHHHhcCC-CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEE
Q 012436 310 VGSC----RNKSDEERLQSLKDKSIELKV-DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIA 384 (464)
Q Consensus 310 ~G~~----~~~~~~~~~~~l~~~~~~~~l-~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~ 384 (464)
+|+. ...++.++.+++.++++++++ .+.|.|+...++.+...+++.+.+.+.....|.||++++|||+||+|||+
T Consensus 315 ~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvA 394 (495)
T KOG0853|consen 315 AGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVA 394 (495)
T ss_pred ecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEE
Confidence 8832 234566789999999999998 57788888888888888888888766655669999999999999999999
Q ss_pred eCCCCCccceecccCCccceeecC-CHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHH
Q 012436 385 HNSAGPKMDIVLEEDGQQTGFLAQ-NAE---EYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPIL 459 (464)
Q Consensus 385 ~~~~~~~~~~v~~~~~~~~g~~~~-~~~---~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~ 459 (464)
++.||+ .|++.+ +.+|++++ +.+ .+++++.++.. |++.+.++++++++++ +.|+|..+.+++.+.+.+..
T Consensus 395 t~~GGP-~EiV~~---~~tG~l~dp~~e~~~~~a~~~~kl~~-~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 395 TNNGGP-AEIVVH---GVTGLLIDPGQEAVAELADALLKLRR-DPELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred ecCCCc-eEEEEc---CCcceeeCCchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcC
Confidence 999999 799999 99999997 666 69999999999 9999999999999999 77999999999998887654
No 72
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.95 E-value=2.5e-26 Score=219.70 Aligned_cols=329 Identities=16% Similarity=0.158 Sum_probs=211.2
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||+|+.... ||......+++++|.+.|| +|.++++... .. .......++ ++..++...+....
T Consensus 1 ~~i~~~~g~~---~g~~~~~~~La~~L~~~g~--eV~vv~~~~~--~~---~~~~~~~g~------~~~~i~~~~~~~~~ 64 (348)
T TIGR01133 1 KKVVLAAGGT---GGHIFPALAVAEELIKRGV--EVLWLGTKRG--LE---KRLVPKAGI------EFYFIPVGGLRRKG 64 (348)
T ss_pred CeEEEEeCcc---HHHHhHHHHHHHHHHhCCC--EEEEEeCCCc--ch---hcccccCCC------ceEEEeccCcCCCC
Confidence 5888875444 4666677799999999995 5555554321 00 011011122 44444432221111
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (464)
....+......+.....+.+.+++.+||+||++........ .++..++|++.+.+...
T Consensus 65 ~~~~l~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~-------------------- 124 (348)
T TIGR01133 65 SFRLIKTPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV-------------------- 124 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC--------------------
Confidence 11112122223445556677789999999998766543322 45577889875332100
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCC----CCCCCC
Q 012436 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP----LERSTE 268 (464)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~----~~~~~~ 268 (464)
. .+.++++.+.+|.++++|+.+++.+ +..+++||++...+.... ...+++
T Consensus 125 -------~-----------~~~~~~~~~~~d~ii~~~~~~~~~~--------~~~~i~n~v~~~~~~~~~~~~~~~~~~~ 178 (348)
T TIGR01133 125 -------P-----------GLTNKLLSRFAKKVLISFPGAKDHF--------EAVLVGNPVRQEIRSLPVPRERFGLREG 178 (348)
T ss_pred -------c-----------cHHHHHHHHHhCeeEECchhHhhcC--------CceEEcCCcCHHHhcccchhhhcCCCCC
Confidence 0 0123455678999999999887665 236899999865443211 111245
Q ss_pred CcEEEEEeccCCCCChHH-HHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 269 YPAIISVAQFRPEKAHPL-QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~-ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
.++++++|+....|++.. ++++++.+... ++++++++++.+ .+++++.++++++.+.+.|. . .
T Consensus 179 ~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~------~~~~~~~~g~~~------~~~l~~~~~~~~l~~~v~~~---~-~ 242 (348)
T TIGR01133 179 KPTILVLGGSQGAKILNELVPKALAKLAEK------GIQIVHQTGKND------LEKVKNVYQELGIEAIVTFI---D-E 242 (348)
T ss_pred CeEEEEECCchhHHHHHHHHHHHHHHHhhc------CcEEEEECCcch------HHHHHHHHhhCCceEEecCc---c-c
Confidence 678999998777888654 55788777542 455544443321 15677778777765444444 2 3
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc------cceecccCCccceeecC--C--HHHHHHHH
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK------MDIVLEEDGQQTGFLAQ--N--AEEYADAI 417 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~------~~~v~~~~~~~~g~~~~--~--~~~la~~i 417 (464)
++.++|+.||+++.++ | +.+++|||++|+|+|+++.++.. .+++.+ +++|++++ | +++++++|
T Consensus 243 ~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~---~~~G~~~~~~~~~~~~l~~~i 315 (348)
T TIGR01133 243 NMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED---LGAGLVIRQKELLPEKLLEAL 315 (348)
T ss_pred CHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH---CCCEEEEecccCCHHHHHHHH
Confidence 8999999999999864 2 68999999999999999875421 135666 78898875 4 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHccCHHHHHH
Q 012436 418 VKIISMPETERLEMAAAARRRAARFSEQRFYE 449 (464)
Q Consensus 418 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 449 (464)
.++++ |++.+++|+++++++++....+++++
T Consensus 316 ~~ll~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (348)
T TIGR01133 316 LKLLL-DPANLEAMAEAARKLAKPDAAKRIAE 346 (348)
T ss_pred HHHHc-CHHHHHHHHHHHHhcCCccHHHHHHh
Confidence 99999 99999999999988776666666554
No 73
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.95 E-value=1.1e-25 Score=218.16 Aligned_cols=284 Identities=19% Similarity=0.140 Sum_probs=202.8
Q ss_pred hhcCC-cEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHH
Q 012436 137 CKFTP-LYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFS 212 (464)
Q Consensus 137 ~~~~~-Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (464)
+..++ |+|..|..+...+| +.+ ....++.+++|-|....++.+.+. ....
T Consensus 123 ~~~~~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHipfP~~e~f~~lp-----------------------~r~~--- 176 (456)
T TIGR02400 123 PLLQPGDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIPFPSSEIYRTLP-----------------------WRRE--- 176 (456)
T ss_pred HhCCCCCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCC-----------------------cHHH---
Confidence 33444 68877777777766 333 456788899997765444432221 0001
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHHHh----------------CCCCCeEEecCCCCCCCCccCCCCC-----------
Q 012436 213 WMYGLVGSCADLAMVNSSWTQSHIEKLW----------------GIPDRIKRVYPPCDTSGLQVLPLER----------- 265 (464)
Q Consensus 213 ~~~~~~~~~ad~vi~~S~~~~~~~~~~~----------------~~~~~i~~i~~~~d~~~~~~~~~~~----------- 265 (464)
--..+-.+|.|-..+...++.+.... |...++.++|+|+|++.|.+.....
T Consensus 177 --il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~ 254 (456)
T TIGR02400 177 --LLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRE 254 (456)
T ss_pred --HHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHH
Confidence 12334789999999998887775522 2245678899999998875322111
Q ss_pred -CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhc-----------C
Q 012436 266 -STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL-----------K 333 (464)
Q Consensus 266 -~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~-----------~ 333 (464)
-.++++|+++||+.+.||++.+++|++++.++.++...++.|+++|.....+. ...+++++.++++ +
T Consensus 255 ~~~~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~-~~~~~l~~~i~~lv~~in~~~~~~~ 333 (456)
T TIGR02400 255 SLKGRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDV-PEYQQLRRQVEELVGRINGRFGTLD 333 (456)
T ss_pred HcCCCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCc-hHHHHHHHHHHHHHHHHHhccCCCC
Confidence 13567899999999999999999999998877621111356877764221111 1223344444332 1
Q ss_pred CCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCc----EEEeCCCCCccceecccCCccceeecC-
Q 012436 334 VDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAI----PIAHNSAGPKMDIVLEEDGQQTGFLAQ- 408 (464)
Q Consensus 334 l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~P----vI~~~~~~~~~~~v~~~~~~~~g~~~~- 408 (464)
..+.+.+.|.++.+++..+|+.||++++||..||+|++++||||||+| +|+|+.+|..++ + + +|++++
T Consensus 334 ~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~-l-----~-~gllVnP 406 (456)
T TIGR02400 334 WTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQE-L-----N-GALLVNP 406 (456)
T ss_pred CccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHH-h-----C-CcEEECC
Confidence 122344567889999999999999999999999999999999999999 999998887443 3 2 577775
Q ss_pred -CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 409 -NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 409 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
|+++++++|.++++|++++++++.+..++.+.++|+..+++++++.+.
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRKNDVQRWREDFLSDLN 455 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhh
Confidence 999999999999997788899999999999988999999999887553
No 74
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.95 E-value=2.9e-26 Score=224.46 Aligned_cols=281 Identities=18% Similarity=0.140 Sum_probs=200.2
Q ss_pred CCcEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHH
Q 012436 140 TPLYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYG 216 (464)
Q Consensus 140 ~~Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
+.|+|+.+..+...++ +.+ ..+.|+++++|-|....+...-+. ... .+.+
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~~~~~~i~~f~HipfP~~e~~~~lp-----------------------~~~----~ll~ 183 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLP-----------------------WRE----ELLR 183 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCC-----------------------ChH----HHHH
Confidence 4578887777666666 322 456899999996654333321111 000 1112
Q ss_pred HHhhcCCEEEEcCHHHHHHHHHHh-----------------CCCCCeEEecCCCCCCCCccCCCC------------CCC
Q 012436 217 LVGSCADLAMVNSSWTQSHIEKLW-----------------GIPDRIKRVYPPCDTSGLQVLPLE------------RST 267 (464)
Q Consensus 217 ~~~~~ad~vi~~S~~~~~~~~~~~-----------------~~~~~i~~i~~~~d~~~~~~~~~~------------~~~ 267 (464)
.+..+|.+...+....+.+.+.. +...++.++|+|+|.+.|.+.... ..+
T Consensus 184 -~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~ 262 (460)
T cd03788 184 -GLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLG 262 (460)
T ss_pred -HHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcC
Confidence 23458888888866554444321 223568899999998877532111 124
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCC---CccHHHHHHHHHHHHhcCC-------CCc
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN---KSDEERLQSLKDKSIELKV-------DGN 337 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~---~~~~~~~~~l~~~~~~~~l-------~~~ 337 (464)
++++|+++||+.+.||++.+++|++.+.++.++...+++|+++|.+.. .+..++.+++++++.+++. .+.
T Consensus 263 ~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v 342 (460)
T cd03788 263 GRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPV 342 (460)
T ss_pred CCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeE
Confidence 568999999999999999999999998877621111367888876432 2223455666666555432 223
Q ss_pred EEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCc----EEEeCCCCCccceecccCCccceeecC--CHH
Q 012436 338 VEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAI----PIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAE 411 (464)
Q Consensus 338 v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~P----vI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~ 411 (464)
+.+.|.++.+++.++|+.||++++||..||+|++++|||+||+| ||+|+.+|.. +. +.+|++++ |++
T Consensus 343 ~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~-~~------~~~g~lv~p~d~~ 415 (460)
T cd03788 343 RYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAA-EE------LSGALLVNPYDID 415 (460)
T ss_pred EEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccch-hh------cCCCEEECCCCHH
Confidence 34568889999999999999999999999999999999999999 9999888773 33 25688875 999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012436 412 EYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAI 455 (464)
Q Consensus 412 ~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 455 (464)
+++++|.+++++++++++.+++++++.+++|+++.+++++++.+
T Consensus 416 ~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w~~~~l~~l 459 (460)
T cd03788 416 EVADAIHRALTMPLEERRERHRKLREYVRTHDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 99999999999556788888888998888999999999987653
No 75
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.94 E-value=1.6e-24 Score=207.91 Aligned_cols=310 Identities=14% Similarity=0.092 Sum_probs=194.1
Q ss_pred cCCcEEEecccccccch--hh-hccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHH
Q 012436 139 FTPLYYFDTSGYAFTYP--LA-RIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMY 215 (464)
Q Consensus 139 ~~~Dvv~~~~~~~~~~~--~~-~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.++|++|+|....+... +. +..++|.|+|.|.......+..- ..+.|++-.. ..+........-.-...+|
T Consensus 147 ~~~dViH~HeWm~g~a~~~lK~~~~~VptVfTtHAT~~GR~l~~g---~~~~y~~l~~---~~~d~eA~~~~I~~r~~iE 220 (590)
T cd03793 147 EPAVVAHFHEWQAGVGLPLLRKRKVDVSTIFTTHATLLGRYLCAG---NVDFYNNLDY---FDVDKEAGKRGIYHRYCIE 220 (590)
T ss_pred CCCeEEEEcchhHhHHHHHHHHhCCCCCEEEEecccccccccccC---Ccccchhhhh---cchhhhhhcccchHHHHHH
Confidence 47999998877665433 33 25788999999944322211100 0111111000 0000000011112223478
Q ss_pred HHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC------------------------CCCCCCcE
Q 012436 216 GLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------------------------ERSTEYPA 271 (464)
Q Consensus 216 ~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~------------------------~~~~~~~~ 271 (464)
+.+...||.++++|+.+++++...++.+... |+|||+|.+.|..... ....++..
T Consensus 221 ~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~-ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~tl 299 (590)
T cd03793 221 RAAAHCAHVFTTVSEITAYEAEHLLKRKPDV-VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDKTL 299 (590)
T ss_pred HHHHhhCCEEEECChHHHHHHHHHhCCCCCE-EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCCeE
Confidence 8999999999999999999999999885555 8999999988764321 11134456
Q ss_pred EEE-EeccCC-CCChHHHHHHHHHHHHHhcCCCCCc---EEEEEcCCCCCc------cHHHHHHHH--------------
Q 012436 272 IIS-VAQFRP-EKAHPLQLEAFSVALRKLDADLPRP---RLQFVGSCRNKS------DEERLQSLK-------------- 326 (464)
Q Consensus 272 i~~-~G~~~~-~K~~~~ll~a~~~l~~~~~~~~p~~---~l~i~G~~~~~~------~~~~~~~l~-------------- 326 (464)
++| +||++. .||++.+|+|+.++....+...++. .|+++=.....- .+...++++
T Consensus 300 i~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~ 379 (590)
T cd03793 300 YFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRL 379 (590)
T ss_pred EEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhh
Confidence 666 799988 9999999999999877543322222 333333221100 001111111
Q ss_pred -----------------------------------------------------HHHHhcCCC----Cc--EEEccC-CC-
Q 012436 327 -----------------------------------------------------DKSIELKVD----GN--VEFYKN-LL- 345 (464)
Q Consensus 327 -----------------------------------------------------~~~~~~~l~----~~--v~~~g~-~~- 345 (464)
..+++.++. ++ |.|++. ++
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~ 459 (590)
T cd03793 380 FEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSS 459 (590)
T ss_pred hhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCC
Confidence 112222222 22 344431 11
Q ss_pred -----hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCc-ccee-ecC-------
Q 012436 346 -----YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQ-QTGF-LAQ------- 408 (464)
Q Consensus 346 -----~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~-~~g~-~~~------- 408 (464)
..+..++|+.||++++||.+|+||++++|||+||+|||+|+.+|.. .|++.+ + ..|+ +.+
T Consensus 460 ~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~---~~~~gi~V~~r~~~~~~ 536 (590)
T cd03793 460 TNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIED---PESYGIYIVDRRFKSPD 536 (590)
T ss_pred CCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhcc---CCCceEEEecCCccchH
Confidence 2468888999999999999999999999999999999999998772 233332 2 3454 431
Q ss_pred -CHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHccCHHHHHHHHHHHHHHHHh
Q 012436 409 -NAEEYADAIVKIISMPETERLEMAAAAR--RRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 409 -~~~~la~~i~~l~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
++++++++|.++++ . +.++.+.++++ +..+.|+|+++++.|.+.++-+++
T Consensus 537 e~v~~La~~m~~~~~-~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 537 ESVQQLTQYMYEFCQ-L-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHHHHHHhC-C-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 67888999999886 4 34555555544 555899999999999999987764
No 76
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2e-24 Score=206.76 Aligned_cols=397 Identities=16% Similarity=0.092 Sum_probs=255.7
Q ss_pred ceEEEecCCCCC---CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHh--hcCcccC--C---------
Q 012436 35 TSVAFFHPNTND---GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD--RFGVELL--H--------- 98 (464)
Q Consensus 35 mkI~~~~~~~~~---~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~--------- 98 (464)
|||+++.....+ .||-.-++..+.++|.+.| ++|.++.+.+.....+..+..+. .+++... .
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g--~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRG--VDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYG 78 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcC--CeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeec
Confidence 788887765544 2899999999999999999 66666666653222222221111 1111000 0
Q ss_pred ---Cceeeeeeccccccc---ccCcceehhhhchhhhHHHHHHhhh----cCCcEEEecccccccch--hhh----ccCc
Q 012436 99 ---PPKVVHLYRRKWIEE---STYPRFTMIGQSFGSVYLSWEALCK----FTPLYYFDTSGYAFTYP--LAR----IFGC 162 (464)
Q Consensus 99 ---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~----~~~Dvv~~~~~~~~~~~--~~~----~~~~ 162 (464)
++.++.+....+..+ ..+.......++......+...+.. ..|||||++..+....+ ++. ...+
T Consensus 79 ~~~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i 158 (487)
T COG0297 79 KDGGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYII 158 (487)
T ss_pred ccCCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccC
Confidence 011111111111111 0111111111111222233333322 46999999999888877 333 4578
Q ss_pred eEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHH------HHHHHHHHHHhhcCCEEEEcCHHHHHHH
Q 012436 163 RVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYY------TFFSWMYGLVGSCADLAMVNSSWTQSHI 236 (464)
Q Consensus 163 p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ad~vi~~S~~~~~~~ 236 (464)
|.|+|+|+-. |.+........+..-....+. .--..+.+..+..||.|.++|+.-++++
T Consensus 159 ~tVfTIHNl~---------------~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei 223 (487)
T COG0297 159 PTVFTIHNLA---------------YQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEI 223 (487)
T ss_pred CeEEEEeece---------------eecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhh
Confidence 9999999321 111000000000000000000 0001345777899999999999998888
Q ss_pred H-HHhC--------C-CCCeEEecCCCCCCCCccCCCC-------------C---------------CCCCcEEEEEecc
Q 012436 237 E-KLWG--------I-PDRIKRVYPPCDTSGLQVLPLE-------------R---------------STEYPAIISVAQF 278 (464)
Q Consensus 237 ~-~~~~--------~-~~~i~~i~~~~d~~~~~~~~~~-------------~---------------~~~~~~i~~~G~~ 278 (464)
. ..++ . ..++.-|.||+|.+.+.+.... . ..+.+.+.++||+
T Consensus 224 ~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl 303 (487)
T COG0297 224 YTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRL 303 (487)
T ss_pred ccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeecc
Confidence 6 2221 1 4667889999988766532111 0 1356899999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcE
Q 012436 279 RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVV 358 (464)
Q Consensus 279 ~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~ 358 (464)
...||++.+++++..+.+. .+++++.|.| +. .+.+.+..+++++. .++.+.-..+..-...+++.+|+
T Consensus 304 ~~QKG~dl~~~~i~~~l~~------~~~~vilG~g-d~---~le~~~~~la~~~~--~~~~~~i~~~~~la~~i~agaD~ 371 (487)
T COG0297 304 TAQKGLDLLLEAIDELLEQ------GWQLVLLGTG-DP---ELEEALRALASRHP--GRVLVVIGYDEPLAHLIYAGADV 371 (487)
T ss_pred ccccchhHHHHHHHHHHHh------CceEEEEecC-cH---HHHHHHHHHHHhcC--ceEEEEeeecHHHHHHHHhcCCE
Confidence 9999999999999999886 6899999998 33 55677888888774 36777767778888899999999
Q ss_pred EEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceeccc----CCccceeecC--CHHHHHHHHHHHHcC--CHHH-HH
Q 012436 359 GIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEE----DGQQTGFLAQ--NAEEYADAIVKIISM--PETE-RL 429 (464)
Q Consensus 359 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~----~~~~~g~~~~--~~~~la~~i~~l~~~--~~~~-~~ 429 (464)
+++||.+|++|++-++||..|+++|+..+||....++... .+..+|+.+. ++++++.+|.+.+.. ++.. .+
T Consensus 372 ~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~ 451 (487)
T COG0297 372 ILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWR 451 (487)
T ss_pred EEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHH
Confidence 9999999999999999999999999999999954444210 1257888875 999999999887751 3333 55
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhc
Q 012436 430 EMAAAARRRAARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 430 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
.+..++.. ..|+|+..++++.+.|+.++...
T Consensus 452 ~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~~~ 482 (487)
T COG0297 452 KVQPNAMG--ADFSWDLSAKEYVELYKPLLSKP 482 (487)
T ss_pred HHHHhhcc--cccCchhHHHHHHHHHHHHhccc
Confidence 55555544 68999999999999999987653
No 77
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.94 E-value=2.3e-25 Score=214.86 Aligned_cols=356 Identities=13% Similarity=0.069 Sum_probs=222.4
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCC-CceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPD-LDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWI 111 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (464)
+.|||++++.+. |||..+.+..+.++|.+.+.+ +++.+...-.. ..+.+.......+...+.....++ +.+.
T Consensus 4 ~~~~vlil~~~~--G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~Y~~~~~~~p~~y----~~~y 76 (391)
T PRK13608 4 QNKKILIITGSF--GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFME-AHPILTSICKKWYINSFKYFRNMY----KGFY 76 (391)
T ss_pred CCceEEEEECCC--CchHHHHHHHHHHHHHhhCCCCceEEEeehHHh-cCchHHHHHHHHHHHHHHHhHHHH----HHHH
Confidence 458999998554 688999999999999988753 45443322111 111111111110000000000000 0000
Q ss_pred ccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhh--hccCceEEEEeeCCcchhhhhhcccccccccC
Q 012436 112 EESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLA--RIFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (464)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~--~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~ 189 (464)
.... ...............+.+.+++.+||+||++...+....+. +..++|++....+-.
T Consensus 77 ~~~~-~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td~~----------------- 138 (391)
T PRK13608 77 YSRP-DKLDKCFYKYYGLNKLINLLIKEKPDLILLTFPTPVMSVLTEQFNINIPVATVMTDYR----------------- 138 (391)
T ss_pred HcCc-hhhHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCC-----------------
Confidence 0000 00000111112235677789999999999765533221122 245789865333100
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCC-------
Q 012436 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP------- 262 (464)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~------- 262 (464)
. . ..++.+.+|.+++.|+.+++.+.+.+..++++.++.+|++.......+
T Consensus 139 ~-----~------------------~~w~~~~~d~~~v~s~~~~~~l~~~gi~~~ki~v~GiPv~~~f~~~~~~~~~~~~ 195 (391)
T PRK13608 139 L-----H------------------KNWITPYSTRYYVATKETKQDFIDVGIDPSTVKVTGIPIDNKFETPIDQKQWLID 195 (391)
T ss_pred c-----c------------------cccccCCCCEEEECCHHHHHHHHHcCCCHHHEEEECeecChHhcccccHHHHHHH
Confidence 0 0 022347899999999999999987633367888888887643322111
Q ss_pred CCCCC-CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc
Q 012436 263 LERST-EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY 341 (464)
Q Consensus 263 ~~~~~-~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~ 341 (464)
...++ +..++++.|++...|+++.+++++.+ .. ++++++++++... +..+++++. ++..++|.+.
T Consensus 196 ~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~~---~~----~~~~~vvv~G~~~----~l~~~l~~~---~~~~~~v~~~ 261 (391)
T PRK13608 196 NNLDPDKQTILMSAGAFGVSKGFDTMITDILA---KS----ANAQVVMICGKSK----ELKRSLTAK---FKSNENVLIL 261 (391)
T ss_pred cCCCCCCCEEEEECCCcccchhHHHHHHHHHh---cC----CCceEEEEcCCCH----HHHHHHHHH---hccCCCeEEE
Confidence 01112 33456678999888999999998532 22 4788876654321 122334333 3335689999
Q ss_pred cCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC-CCCCc---cceecccCCccceeecCCHHHHHHHH
Q 012436 342 KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN-SAGPK---MDIVLEEDGQQTGFLAQNAEEYADAI 417 (464)
Q Consensus 342 g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~-~~~~~---~~~v~~~~~~~~g~~~~~~~~la~~i 417 (464)
|++ +++.++|+.||++|.. +.|+++.|||++|+|+|+++ .++.- ..++.+ .+.|+..+|+++++++|
T Consensus 262 G~~--~~~~~~~~~aDl~I~k----~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~---~G~g~~~~~~~~l~~~i 332 (391)
T PRK13608 262 GYT--KHMNEWMASSQLMITK----PGGITISEGLARCIPMIFLNPAPGQELENALYFEE---KGFGKIADTPEEAIKIV 332 (391)
T ss_pred ecc--chHHHHHHhhhEEEeC----CchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh---CCcEEEeCCHHHHHHHH
Confidence 998 7899999999999963 46889999999999999986 33320 112234 56777778999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 012436 418 VKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 418 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
.++++ |++.+++|++++++..+.++++.+++.+.+++.....
T Consensus 333 ~~ll~-~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 333 ASLTN-GNEQLTNMISTMEQDKIKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred HHHhc-CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhhhh
Confidence 99999 9999999999999988889999999999998876544
No 78
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.94 E-value=5.5e-25 Score=212.04 Aligned_cols=267 Identities=13% Similarity=0.050 Sum_probs=188.0
Q ss_pred HHHHHHhhhcCCcEEEecccccccch---hhh-----ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhh
Q 012436 130 YLSWEALCKFTPLYYFDTSGYAFTYP---LAR-----IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLS 201 (464)
Q Consensus 130 ~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~-----~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (464)
.++.+++++.+||+||++..+....+ +.+ ..++|++..+..-. ..
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~------~~--------------------- 142 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLG------TC--------------------- 142 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCC------Cc---------------------
Confidence 45567788999999998655433222 222 24788877655110 00
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCC--------CCCCCCCcEEE
Q 012436 202 QCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP--------LERSTEYPAII 273 (464)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~--------~~~~~~~~~i~ 273 (464)
...+..+.+|.++++|+..++.+.+.+-.++++.++++|++.+...... ...+++.++++
T Consensus 143 ------------~~~w~~~~~d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il 210 (382)
T PLN02605 143 ------------HPTWFHKGVTRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVL 210 (382)
T ss_pred ------------CcccccCCCCEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEE
Confidence 0123348999999999999999988743367899999998765433111 11124568999
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhcCCCCCcE-EEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHH
Q 012436 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPR-LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKL 352 (464)
Q Consensus 274 ~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~-l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~ 352 (464)
++|+....|++..+++++..+........++.+ ++++|.+. ...+++++. ....+|+++|++ +++.++
T Consensus 211 ~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~-----~~~~~L~~~----~~~~~v~~~G~~--~~~~~l 279 (382)
T PLN02605 211 LMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK-----KLQSKLESR----DWKIPVKVRGFV--TNMEEW 279 (382)
T ss_pred EECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH-----HHHHHHHhh----cccCCeEEEecc--ccHHHH
Confidence 999999999999999999765311000003565 56677552 222444433 223579999999 689999
Q ss_pred HhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCC-----CCccceecccCCccceeecCCHHHHHHHHHHHHcCC-HH
Q 012436 353 LGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSA-----GPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMP-ET 426 (464)
Q Consensus 353 l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~-----~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~-~~ 426 (464)
|+.||++|.++ .|++++|||+||+|+|+++.. +.. +.+.+ ++.|+...|+++++++|.++++ | ++
T Consensus 280 ~~aaDv~V~~~----g~~ti~EAma~g~PvI~~~~~pgqe~gn~-~~i~~---~g~g~~~~~~~~la~~i~~ll~-~~~~ 350 (382)
T PLN02605 280 MGACDCIITKA----GPGTIAEALIRGLPIILNGYIPGQEEGNV-PYVVD---NGFGAFSESPKEIARIVAEWFG-DKSD 350 (382)
T ss_pred HHhCCEEEECC----CcchHHHHHHcCCCEEEecCCCccchhhH-HHHHh---CCceeecCCHHHHHHHHHHHHc-CCHH
Confidence 99999999864 478999999999999999842 221 23344 5678777899999999999998 8 99
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012436 427 ERLEMAAAARRRAARFSEQRFYEDFKAAI 455 (464)
Q Consensus 427 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 455 (464)
.+++|++++++.....+.+.+++.+.+..
T Consensus 351 ~~~~m~~~~~~~~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 351 ELEAMSENALKLARPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 99999999998887788888887776554
No 79
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.93 E-value=3.6e-24 Score=205.79 Aligned_cols=213 Identities=18% Similarity=0.088 Sum_probs=158.6
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCC-------CCCCCcEEEEEeccCCCCChH
Q 012436 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE-------RSTEYPAIISVAQFRPEKAHP 285 (464)
Q Consensus 213 ~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~-------~~~~~~~i~~~G~~~~~K~~~ 285 (464)
..++.+++.||.|+++|+..++.+.+. + .++.+++||+|.+.|...... ...++++++|+|++.+.++++
T Consensus 145 ~~e~~~~~~ad~vi~~S~~l~~~~~~~-~--~~i~~i~ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~y~G~l~~~~d~~ 221 (373)
T cd04950 145 EAERRLLKRADLVFTTSPSLYEAKRRL-N--PNVVLVPNGVDYEHFAAARDPPPPPADLAALPRPVIGYYGAIAEWLDLE 221 (373)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHhhC-C--CCEEEcccccCHHHhhcccccCCChhHHhcCCCCEEEEEeccccccCHH
Confidence 567888899999999999999988775 3 689999999998877643221 124568999999999988877
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCC
Q 012436 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID 365 (464)
Q Consensus 286 ~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~ 365 (464)
.+.++++ .. |+++|+++|.+.... ....+ ...+||+++|++|++++..+|+.+|++++|+..
T Consensus 222 ll~~la~----~~----p~~~~vliG~~~~~~------~~~~~----~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~ 283 (373)
T cd04950 222 LLEALAK----AR----PDWSFVLIGPVDVSI------DPSAL----LRLPNVHYLGPKPYKELPAYLAGFDVAILPFRL 283 (373)
T ss_pred HHHHHHH----HC----CCCEEEEECCCcCcc------ChhHh----ccCCCEEEeCCCCHHHHHHHHHhCCEEecCCcc
Confidence 6554443 22 699999999873221 11111 113689999999999999999999999999752
Q ss_pred -----CCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 012436 366 -----EHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIISMPE-TERLEMAAAARRR 438 (464)
Q Consensus 366 -----e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~~~~-~~~~~~~~~~~~~ 438 (464)
+++|++++||||||+|||+|+.+. +... .+.+++.+ |+++++++|.+++. ++ ....+ .+++.
T Consensus 284 ~~~~~~~~P~Kl~EylA~G~PVVat~~~~----~~~~---~~~~~~~~~d~~~~~~ai~~~l~-~~~~~~~~---~~~~~ 352 (373)
T cd04950 284 NELTRATSPLKLFEYLAAGKPVVATPLPE----VRRY---EDEVVLIADDPEEFVAAIEKALL-EDGPARER---RRLRL 352 (373)
T ss_pred chhhhcCCcchHHHHhccCCCEEecCcHH----HHhh---cCcEEEeCCCHHHHHHHHHHHHh-cCCchHHH---HHHHH
Confidence 367999999999999999998553 3344 34455554 89999999999765 33 22222 22234
Q ss_pred HHccCHHHHHHHHHHHHHH
Q 012436 439 AARFSEQRFYEDFKAAIRP 457 (464)
Q Consensus 439 ~~~~s~~~~~~~~~~~~~~ 457 (464)
++.+||+..++++.+.+.+
T Consensus 353 ~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 353 AAQNSWDARAAEMLEALQE 371 (373)
T ss_pred HHHCCHHHHHHHHHHHHHh
Confidence 5899999999999976654
No 80
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.92 E-value=2.4e-23 Score=214.14 Aligned_cols=290 Identities=17% Similarity=0.119 Sum_probs=206.7
Q ss_pred hhhcCC-cEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHH
Q 012436 136 LCKFTP-LYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFF 211 (464)
Q Consensus 136 l~~~~~-Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (464)
.+..++ |+|..|..+...+| +.+ ..+.++.+++|-|..+.++.+.+..+ ..+
T Consensus 142 ~~~~~~~d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~r-----------------------~~i- 197 (797)
T PLN03063 142 KENYEEGDVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPSR-----------------------SEL- 197 (797)
T ss_pred HHhcCCCCEEEEecchhhhHHHHHHHhCCCCcEEEEecCCCCCHHHHhhCCCH-----------------------HHH-
Confidence 333454 67776777777766 333 67889999999777555543332200 011
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHHH----------------hCCCCCeEEecCCCCCCCCccCCCC-----------
Q 012436 212 SWMYGLVGSCADLAMVNSSWTQSHIEKL----------------WGIPDRIKRVYPPCDTSGLQVLPLE----------- 264 (464)
Q Consensus 212 ~~~~~~~~~~ad~vi~~S~~~~~~~~~~----------------~~~~~~i~~i~~~~d~~~~~~~~~~----------- 264 (464)
-..+-.||.|-+.+....+.+.+. .|...++.++|+|+|.+.|.+....
T Consensus 198 ----l~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr 273 (797)
T PLN03063 198 ----LRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELK 273 (797)
T ss_pred ----HHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHH
Confidence 122356777777777776666541 1223568899999998876532111
Q ss_pred -CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcC--CCC-----
Q 012436 265 -RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELK--VDG----- 336 (464)
Q Consensus 265 -~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~--l~~----- 336 (464)
...++++|+++||+++.||++.+++|++.+.+..++...++.|+.++. +.+.+....+++++.++++. +..
T Consensus 274 ~~~~~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~-psr~~~~~y~~l~~~v~~l~g~In~~~g~~ 352 (797)
T PLN03063 274 RFFAGRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAV-PTRNDVPEYQKLKSQVHELVGRINGRFGSV 352 (797)
T ss_pred HhcCCCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEec-CCCCchHHHHHHHHHHHHHHHHhhcccccC
Confidence 113567899999999999999999999999877631111234554443 22222223355666665553 221
Q ss_pred ----cEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCc----EEEeCCCCCccceecccCCccceeecC
Q 012436 337 ----NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAI----PIAHNSAGPKMDIVLEEDGQQTGFLAQ 408 (464)
Q Consensus 337 ----~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~P----vI~~~~~~~~~~~v~~~~~~~~g~~~~ 408 (464)
-+.+.+.++.+++..+|+.||++++||..||+|++++||||||+| +|+|..+|.. +.+ +.+|++++
T Consensus 353 ~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~-~~l-----~~~allVn 426 (797)
T PLN03063 353 SSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAG-QSL-----GAGALLVN 426 (797)
T ss_pred CCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCch-hhh-----cCCeEEEC
Confidence 123446889999999999999999999999999999999999999 9999988874 443 35688875
Q ss_pred --CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 012436 409 --NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 409 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
|+++++++|.++++|+++++++..+..++++.+++|..+++.+++.+++...
T Consensus 427 P~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 427 PWNITEVSSAIKEALNMSDEERETRHRHNFQYVKTHSAQKWADDFMSELNDIIV 480 (797)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999988899999999999999999999999999999887754
No 81
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.92 E-value=4.4e-24 Score=182.53 Aligned_cols=158 Identities=29% Similarity=0.400 Sum_probs=140.8
Q ss_pred CCCCcEEEEEeccCCCCChHHHHHHHHHHHHH-hcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 012436 266 STEYPAIISVAQFRPEKAHPLQLEAFSVALRK-LDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (464)
Q Consensus 266 ~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~-~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 344 (464)
..++++|+++|++.+.||++.+++++..+.++ . +++.++|+|.+. +...++..++.+++.+++.++|.+
T Consensus 12 ~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~----~~~~l~i~G~~~------~~~~~~~~~~~~~~~~~i~~~~~~ 81 (172)
T PF00534_consen 12 PDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKN----PNYKLVIVGDGE------YKKELKNLIEKLNLKENIIFLGYV 81 (172)
T ss_dssp -TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHH----TTEEEEEESHCC------HHHHHHHHHHHTTCGTTEEEEESH
T ss_pred CCCCeEEEEEecCccccCHHHHHHHHHHHHhhcC----CCeEEEEEcccc------cccccccccccccccccccccccc
Confidence 46678999999999999999999999999864 4 599999999553 346788888999998999999999
Q ss_pred ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 345 ~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
+.+++.++|+.||++++||..|++|.+++|||++|+|||+++.++. .+++.+ +.+|++++ |+++++++|.++++
T Consensus 82 ~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~-~e~~~~---~~~g~~~~~~~~~~l~~~i~~~l~ 157 (172)
T PF00534_consen 82 PDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGN-NEIIND---GVNGFLFDPNDIEELADAIEKLLN 157 (172)
T ss_dssp SHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHH-HHHSGT---TTSEEEESTTSHHHHHHHHHHHHH
T ss_pred cccccccccccceeccccccccccccccccccccccceeeccccCC-ceeecc---ccceEEeCCCCHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998887 788888 88999986 89999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 012436 423 MPETERLEMAAAARRR 438 (464)
Q Consensus 423 ~~~~~~~~~~~~~~~~ 438 (464)
+++.++.++++++++
T Consensus 158 -~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 158 -DPELRQKLGKNARER 172 (172)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHhcCC
Confidence 999999999999874
No 82
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.90 E-value=2.9e-22 Score=179.38 Aligned_cols=120 Identities=31% Similarity=0.377 Sum_probs=101.7
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC-ChhHHHHH
Q 012436 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL-LYRDLVKL 352 (464)
Q Consensus 274 ~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-~~~~~~~~ 352 (464)
|+|++.+.||++.+++++..+.++. |+++++++|.+... ...+..+.+.+..++|.+.|++ +.+++..+
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~----~~~~~~i~G~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 178 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERG----PDLKLVIAGDGPER------EYLEELLAALLLLDRVIFLGGLDPEELLALL 178 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhC----CCeEEEEEeCCCCh------HHHHHHHHhcCCcccEEEeCCCCcHHHHHHH
Confidence 9999999999999999999998776 69999999998653 3333335666777899999998 45666666
Q ss_pred HhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeec
Q 012436 353 LGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLA 407 (464)
Q Consensus 353 l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~ 407 (464)
++.||++++||..|++|.+++|||++|+|+|+|+.++. .+++.+ +++|+++
T Consensus 179 ~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~-~e~i~~---~~~g~~~ 229 (229)
T cd01635 179 LAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGP-PEIVED---GLTGLLV 229 (229)
T ss_pred hhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCc-ceEEEC---CCceEEC
Confidence 67799999999999999999999999999999999988 677777 7888764
No 83
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.90 E-value=2.5e-21 Score=182.84 Aligned_cols=249 Identities=14% Similarity=0.059 Sum_probs=173.0
Q ss_pred HHhhhcCC-cEEEeccccccc--ch---hhh--ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHH
Q 012436 134 EALCKFTP-LYYFDTSGYAFT--YP---LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKI 205 (464)
Q Consensus 134 ~~l~~~~~-Dvv~~~~~~~~~--~~---~~~--~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (464)
+.+...++ |+||.++..... +. +.+ ..++|+|+++|.-. .... ...
T Consensus 57 ~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~------~~~~------------------~~~-- 110 (333)
T PRK09814 57 GILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIE------PLRF------------------DSN-- 110 (333)
T ss_pred HHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcH------HHhc------------------ccc--
Confidence 34666777 999876653322 11 222 34799999999311 1000 000
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChH
Q 012436 206 VYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHP 285 (464)
Q Consensus 206 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~ 285 (464)
......++..++.+|.++++|+.+++.+.+.+....++.++++..+..... ........+.++|+|++....+
T Consensus 111 ---~~~~~~~~~~~~~aD~iI~~S~~~~~~l~~~g~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~i~yaG~l~k~~~-- 183 (333)
T PRK09814 111 ---YYLMKEEIDMLNLADVLIVHSKKMKDRLVEEGLTTDKIIVQGIFDYLNDIE--LVKTPSFQKKINFAGNLEKSPF-- 183 (333)
T ss_pred ---chhhHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcCceEeccccccccccc--ccccccCCceEEEecChhhchH--
Confidence 001245677889999999999999999988632245676665544332111 1112234568999999984321
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCC-
Q 012436 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI- 364 (464)
Q Consensus 286 ~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~- 364 (464)
+.... ++++|+++|+|+..+ ...++|+|.|+++.+++.++|+. |+.+.+..
T Consensus 184 --------l~~~~----~~~~l~i~G~g~~~~---------------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~ 235 (333)
T PRK09814 184 --------LKNWS----QGIKLTVFGPNPEDL---------------ENSANISYKGWFDPEELPNELSK-GFGLVWDGD 235 (333)
T ss_pred --------HHhcC----CCCeEEEECCCcccc---------------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCC
Confidence 11111 589999999987531 12569999999999999999998 76655432
Q ss_pred ----------CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012436 365 ----------DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEMAAA 434 (464)
Q Consensus 365 ----------~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~~~~ 434 (464)
.-++|..+.|+||||+|||+++.++. .+++.+ +.+|+++++.+++++++.++ +++++++|+++
T Consensus 236 ~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~-~~~V~~---~~~G~~v~~~~el~~~l~~~---~~~~~~~m~~n 308 (333)
T PRK09814 236 TNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAI-ADFIVE---NGLGFVVDSLEELPEIIDNI---TEEEYQEMVEN 308 (333)
T ss_pred CCCccchhhhhccchHHHHHHHHCCCCEEECCCccH-HHHHHh---CCceEEeCCHHHHHHHHHhc---CHHHHHHHHHH
Confidence 13678889999999999999998887 799999 89999999999999999885 56788999999
Q ss_pred HHHHHHccCHHHHHHH
Q 012436 435 ARRRAARFSEQRFYED 450 (464)
Q Consensus 435 ~~~~~~~~s~~~~~~~ 450 (464)
+++.++++.-..+.++
T Consensus 309 ~~~~~~~~~~g~~~~~ 324 (333)
T PRK09814 309 VKKISKLLRNGYFTKK 324 (333)
T ss_pred HHHHHHHHhcchhHHH
Confidence 9998876665555554
No 84
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.90 E-value=2.3e-22 Score=207.70 Aligned_cols=289 Identities=19% Similarity=0.181 Sum_probs=200.8
Q ss_pred hhcCC-cEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHH
Q 012436 137 CKFTP-LYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFS 212 (464)
Q Consensus 137 ~~~~~-Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (464)
+..++ |+|..|..+...+| +.+ ..+.++.+++|.|....++.+.+.. ...+
T Consensus 129 ~~~~~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp~-----------------------~~~l-- 183 (726)
T PRK14501 129 AIARPGDVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPFPSFEVFRLLPW-----------------------REEI-- 183 (726)
T ss_pred HhcCCCCEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCCCChHHHhhCCC-----------------------hHHH--
Confidence 33444 67776777776666 333 5677899999977755544332220 0001
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHHH----------------hCCCCCeEEecCCCCCCCCccCCCC------------
Q 012436 213 WMYGLVGSCADLAMVNSSWTQSHIEKL----------------WGIPDRIKRVYPPCDTSGLQVLPLE------------ 264 (464)
Q Consensus 213 ~~~~~~~~~ad~vi~~S~~~~~~~~~~----------------~~~~~~i~~i~~~~d~~~~~~~~~~------------ 264 (464)
-..+-.+|.|-..+....+.+.+. .|...++.++|+|+|.+.|.+....
T Consensus 184 ---l~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~ 260 (726)
T PRK14501 184 ---LEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQ 260 (726)
T ss_pred ---HHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHH
Confidence 122366788877777765555432 1223357889999999887632211
Q ss_pred CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCC---CccHHHHHHHHHHHHhcC-------C
Q 012436 265 RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN---KSDEERLQSLKDKSIELK-------V 334 (464)
Q Consensus 265 ~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~---~~~~~~~~~l~~~~~~~~-------l 334 (464)
..+++++|+++||+.+.||+..+++|++.+.+..++...+++|+++|.+.. .+..++.+++++++.+.+ .
T Consensus 261 ~~~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~ 340 (726)
T PRK14501 261 DLRGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDW 340 (726)
T ss_pred HcCCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCc
Confidence 123567999999999999999999999998877632111478988874421 112234444555543322 1
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCC-----cEEEeCCCCCccceecccCCccceeecC-
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA-----IPIAHNSAGPKMDIVLEEDGQQTGFLAQ- 408 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~-----PvI~~~~~~~~~~~v~~~~~~~~g~~~~- 408 (464)
.+.+.+.|+++.+++..+|+.||++++||..||+|++++|||+||+ ||++...|+. .++. .|++++
T Consensus 341 ~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~-~~l~-------~~llv~P 412 (726)
T PRK14501 341 TPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAA-AELA-------EALLVNP 412 (726)
T ss_pred ceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchh-HHhC-------cCeEECC
Confidence 2345677999999999999999999999999999999999999955 5555555554 5542 367775
Q ss_pred -CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 012436 409 -NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCH 461 (464)
Q Consensus 409 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 461 (464)
|+++++++|.++++|+++++.+..+++++.+.+|||+.+++++++.++++..+
T Consensus 413 ~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 413 NDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999998555666667778888888999999999999999887543
No 85
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.88 E-value=3.9e-20 Score=178.30 Aligned_cols=287 Identities=14% Similarity=0.108 Sum_probs=211.8
Q ss_pred hhhcCC-cEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHH
Q 012436 136 LCKFTP-LYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFF 211 (464)
Q Consensus 136 l~~~~~-Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (464)
.+..++ |+|..|..+...+| +.+ ..+.++-+++|-|..+.++.+.+..+ ..+
T Consensus 127 ~~~~~~~d~vWVhDYhL~llp~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r-----------------------~~l- 182 (487)
T TIGR02398 127 CLEAAEGATVWVHDYNLWLVPGYIRQLRPDLKIAFFHHTPFPSADVFNILPWR-----------------------EQI- 182 (487)
T ss_pred HHhcCCCCEEEEecchhhHHHHHHHHhCCCCeEEEEeeCCCCChHHHhhCCch-----------------------HHH-
Confidence 334444 57766676666666 333 56678899999777555553332200 011
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHHHh----C---------------------------------CCCCeEEecCCCC
Q 012436 212 SWMYGLVGSCADLAMVNSSWTQSHIEKLW----G---------------------------------IPDRIKRVYPPCD 254 (464)
Q Consensus 212 ~~~~~~~~~~ad~vi~~S~~~~~~~~~~~----~---------------------------------~~~~i~~i~~~~d 254 (464)
-..+-.+|.|=..+...++.+.+.. + ..-++.++|.|+|
T Consensus 183 ----l~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID 258 (487)
T TIGR02398 183 ----IGSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTD 258 (487)
T ss_pred ----HHHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEec
Confidence 1223677888888877776665421 1 1223678999999
Q ss_pred CCCCccCCCCC------------CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC---ccH
Q 012436 255 TSGLQVLPLER------------STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK---SDE 319 (464)
Q Consensus 255 ~~~~~~~~~~~------------~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~---~~~ 319 (464)
++.|.+..... -.++++|++++|++..||+...++|++++.+++++...+++|+++|.++.. +..
T Consensus 259 ~~~f~~~~~~~~~~~~~~~lr~~~~~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~ 338 (487)
T TIGR02398 259 PERIRSALAAASIREMMERIRSELAGVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYD 338 (487)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHH
Confidence 98875332111 135689999999999999999999999998887433335799999876432 233
Q ss_pred HHHHHHHHHHHhc-------CCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCC----cEEEeCCC
Q 012436 320 ERLQSLKDKSIEL-------KVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA----IPIAHNSA 388 (464)
Q Consensus 320 ~~~~~l~~~~~~~-------~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~----PvI~~~~~ 388 (464)
++.+++++++.+. +..+.+.+.+.+|.+++..+|+.||+++.||..||++++..|+++|+. |+|.|..+
T Consensus 339 ~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa 418 (487)
T TIGR02398 339 ELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA 418 (487)
T ss_pred HHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccc
Confidence 4566777777664 556678889999999999999999999999999999999999999988 99999999
Q ss_pred CCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012436 389 GPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRP 457 (464)
Q Consensus 389 ~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 457 (464)
|...++ ..+++++ |++++|++|.++++|..+++++..+..++.+.+++....++.+++.+..
T Consensus 419 Gaa~~l-------~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 419 GAAVEL-------KGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYDVQRWADEFLAAVSP 482 (487)
T ss_pred cchhhc-------CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhh
Confidence 884322 3466665 9999999999999988888888888888888999999999998876654
No 86
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.87 E-value=2.4e-20 Score=179.13 Aligned_cols=329 Identities=15% Similarity=0.077 Sum_probs=200.6
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhh-CCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEE-SPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~-g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
|||+++...-+.. ..+.-++++|.+. +.++. ++.|+.+ ....+...+.|++.. . +.+....
T Consensus 1 ~~i~~~~gtr~~~----~~~~p~~~~l~~~~~~~~~-~~~tg~h----~~~~~~~~~~~~i~~--~---~~~~~~~---- 62 (365)
T TIGR00236 1 LKVSIVLGTRPEA----IKMAPLIRALKKYPEIDSY-VIVTAQH----REMLDQVLDLFHLPP--D---YDLNIMS---- 62 (365)
T ss_pred CeEEEEEecCHHH----HHHHHHHHHHhhCCCCCEE-EEEeCCC----HHHHHHHHHhcCCCC--C---eeeecCC----
Confidence 6888876655333 2445677888875 32333 3344433 234444444466531 1 1111110
Q ss_pred ccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhcccccccccCC
Q 012436 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNN 190 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~ 190 (464)
............+..+.+.+++.+||+||.+......+. .++..++|++. ++....+.+. +
T Consensus 63 ---~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h-~~~g~~s~~~----------~-- 126 (365)
T TIGR00236 63 ---PGQTLGEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGH-VEAGLRTGDR----------Y-- 126 (365)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEE-EeCCCCcCCC----------C--
Confidence 000111122233456667789999999998754332221 55688999864 3321100000 0
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCC-CCCCCcc--C---C--
Q 012436 191 NASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQV--L---P-- 262 (464)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~-d~~~~~~--~---~-- 262 (464)
..+.... .+ ....+.+|.++++|+..++.+.+.+-.++++.+++|++ |...... . .
T Consensus 127 ------~~~~~~~---~r-------~~~~~~ad~~~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~ 190 (365)
T TIGR00236 127 ------SPMPEEI---NR-------QLTGHIADLHFAPTEQAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVL 190 (365)
T ss_pred ------CCCccHH---HH-------HHHHHHHHhccCCCHHHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHH
Confidence 0000000 00 11224589999999999999988643367899999996 4211110 0 0
Q ss_pred CCCCCCCcEEEEEe-cc-CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE
Q 012436 263 LERSTEYPAIISVA-QF-RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF 340 (464)
Q Consensus 263 ~~~~~~~~~i~~~G-~~-~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~ 340 (464)
.....++.++++.+ +. ...|+++.+++|+..+.+.. |++++++.|.+.. ...+. +.+.++..++|.+
T Consensus 191 ~~~~~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~----~~~~~vi~~~~~~----~~~~~---~~~~~~~~~~v~~ 259 (365)
T TIGR00236 191 SEFGEDKRYILLTLHRRENVGEPLENIFKAIREIVEEF----EDVQIVYPVHLNP----VVREP---LHKHLGDSKRVHL 259 (365)
T ss_pred HhcCCCCCEEEEecCchhhhhhHHHHHHHHHHHHHHHC----CCCEEEEECCCCh----HHHHH---HHHHhCCCCCEEE
Confidence 00011234556555 33 24589999999999987665 5888888865431 11122 2333455678999
Q ss_pred ccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe-CCCCCccceecccCCccceeecC-CHHHHHHHHH
Q 012436 341 YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH-NSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIV 418 (464)
Q Consensus 341 ~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~-~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~ 418 (464)
.|.++..++..+++.||+++.+| |..++|||++|+|||++ +.++. .+++.. + .+++++ |++++++++.
T Consensus 260 ~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~~~~~~~~-~e~~~~---g-~~~lv~~d~~~i~~ai~ 329 (365)
T TIGR00236 260 IEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVLVLRDTTER-PETVEA---G-TNKLVGTDKENITKAAK 329 (365)
T ss_pred ECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEEECCCCCCC-hHHHhc---C-ceEEeCCCHHHHHHHHH
Confidence 99999999999999999999886 55689999999999997 55555 677665 4 455555 9999999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 012436 419 KIISMPETERLEMAAAA 435 (464)
Q Consensus 419 ~l~~~~~~~~~~~~~~~ 435 (464)
++++ |++.+++++++.
T Consensus 330 ~ll~-~~~~~~~~~~~~ 345 (365)
T TIGR00236 330 RLLT-DPDEYKKMSNAS 345 (365)
T ss_pred HHHh-ChHHHHHhhhcC
Confidence 9999 998888877655
No 87
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.8e-18 Score=152.15 Aligned_cols=369 Identities=16% Similarity=0.195 Sum_probs=233.9
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIE 112 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (464)
++.+++++ .++.-|-+.|+ +.-|..|++.|++|+.+-|..+. +.+++.+ .+.++++.++..++..
T Consensus 11 ~k~ra~vv--VLGDvGRSPRM-qYHA~Sla~~gf~VdliGy~~s~--p~e~l~~----------hprI~ih~m~~l~~~~ 75 (444)
T KOG2941|consen 11 KKKRAIVV--VLGDVGRSPRM-QYHALSLAKLGFQVDLIGYVESI--PLEELLN----------HPRIRIHGMPNLPFLQ 75 (444)
T ss_pred ccceEEEE--EecccCCChHH-HHHHHHHHHcCCeEEEEEecCCC--ChHHHhc----------CCceEEEeCCCCcccC
Confidence 33444433 23334444554 46688999999888887777542 1222221 1222444444332221
Q ss_pred ccc---CcceehhhhchhhhHHHHHHhhhcCCcEEEecccccc-cch----hhhccCceEEEEeeCCcchhhhhhccccc
Q 012436 113 EST---YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAF-TYP----LARIFGCRVICYTHYPTISLDMISRVREG 184 (464)
Q Consensus 113 ~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~-~~~----~~~~~~~p~v~~~h~p~~~~~~~~~~~~~ 184 (464)
... +-.+..+++++ ...+.++....+|++..+..... .+. +....+.+++++.|+-..+ -..
T Consensus 76 ~~p~~~~l~lKvf~Qfl---~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys-l~l------ 145 (444)
T KOG2941|consen 76 GGPRVLFLPLKVFWQFL---SLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS-LQL------ 145 (444)
T ss_pred CCchhhhhHHHHHHHHH---HHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH-HHH------
Confidence 111 01112222332 23334445678898875443221 111 3347899999999943211 000
Q ss_pred ccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCC---CCCC---
Q 012436 185 SSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPC---DTSG--- 257 (464)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~---d~~~--- 257 (464)
.+........-+...+.|+..-+.||.-+|+++.+++.+.+.+|. ..++.+-.++- +.+.
T Consensus 146 -------------~~~~g~~h~lV~l~~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps~~~~l~~~H~ 212 (444)
T KOG2941|consen 146 -------------KLKLGFQHPLVRLVRWLEKYFGKLADYNLCVTKAMREDLIQNWGINRAKVLYDRPPSKPTPLDEQHE 212 (444)
T ss_pred -------------HhhcCCCCchHHHHHHHHHHhhcccccchhhHHHHHHHHHHhcCCceeEEEecCCCCCCCchhHHHH
Confidence 011111123355667788899999999999999999999999985 33332222221 1110
Q ss_pred -CccC-----------CCCC-------------------CCCCcEEEEEeccCCCCChHHHHHHHHHHHHH---hcCCCC
Q 012436 258 -LQVL-----------PLER-------------------STEYPAIISVAQFRPEKAHPLQLEAFSVALRK---LDADLP 303 (464)
Q Consensus 258 -~~~~-----------~~~~-------------------~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~---~~~~~p 303 (464)
|.+. +... .+.+..++...++.+..++..+++|+....++ ..-..|
T Consensus 213 lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP 292 (444)
T KOG2941|consen 213 LFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLP 292 (444)
T ss_pred HHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCC
Confidence 1100 0000 02335666777789999999999999854222 122458
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEE--EcCC-CCCCChHHHHHHHhCC
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGI--HSMI-DEHFGISVVEYMAAGA 380 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v--~ps~-~e~~~~~~~Ea~a~G~ 380 (464)
.+-++|.|.||.+ +...+.++++++...-....++.-+|.+.+++.||+.| ++|. .-..|+.+++...||+
T Consensus 293 ~llciITGKGPlk------E~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcgl 366 (444)
T KOG2941|consen 293 SLLCIITGKGPLK------EKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGL 366 (444)
T ss_pred cEEEEEcCCCchh------HHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCC
Confidence 8999999999875 67777788888764334468889999999999999755 4553 4478999999999999
Q ss_pred cEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHccCHHHHHHH
Q 012436 381 IPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIIS---MPETERLEMAAAARRRAARFSEQRFYED 450 (464)
Q Consensus 381 PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 450 (464)
||++-+.... .|++.+ ++||++++|.+++++.++.+.+ -+.+.+.++..++++. +...|+..-++
T Consensus 367 PvcA~~fkcl-~ELVkh---~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~-~e~RW~~~W~~ 434 (444)
T KOG2941|consen 367 PVCAVNFKCL-DELVKH---GENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE-QELRWDESWER 434 (444)
T ss_pred ceeeecchhH-HHHHhc---CCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH-HhhhHHHHHHH
Confidence 9999999887 899999 9999999999999999998886 1567788888888876 44555554433
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.85 E-value=1e-19 Score=174.98 Aligned_cols=253 Identities=17% Similarity=0.059 Sum_probs=171.4
Q ss_pred hhhHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHH
Q 012436 127 GSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQC 203 (464)
Q Consensus 127 ~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (464)
.......+.+++.+||+||.+......+. .++..++|++...|+ ..+.+ . ...+.
T Consensus 75 ~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g-~~s~~-------~-----------~~~~~--- 132 (363)
T cd03786 75 GLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAG-LRSFD-------R-----------GMPDE--- 132 (363)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEecc-cccCC-------C-----------CCCch---
Confidence 34556667788889999997754332222 555789998754431 10000 0 00000
Q ss_pred HHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCC-CCCCCccC---------CCCCCCCCcEEE
Q 012436 204 KIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVL---------PLERSTEYPAII 273 (464)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~-d~~~~~~~---------~~~~~~~~~~i~ 273 (464)
. ....+.+.+|.+++.|+..++.+.+.+-.++++.+++||+ |...+... .....+++..++
T Consensus 133 --~-------~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv 203 (363)
T cd03786 133 --E-------NRHAIDKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILV 203 (363)
T ss_pred --H-------HHHHHHHHhhhccCCCHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEE
Confidence 0 0112346789999999999999987643367899999985 43211100 011123445677
Q ss_pred EEeccCC---CCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCC-CCcEEEccCCChhHH
Q 012436 274 SVAQFRP---EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV-DGNVEFYKNLLYRDL 349 (464)
Q Consensus 274 ~~G~~~~---~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l-~~~v~~~g~~~~~~~ 349 (464)
+.|+... .|+++.++++++.+... ++.+++.|+++.. +.+++.+.++++ .++|.+.|..+.+++
T Consensus 204 ~~~r~~~~~~~k~~~~l~~al~~l~~~------~~~vi~~~~~~~~------~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 204 TLHRVENVDDGEQLEEILEALAELAEE------DVPVVFPNHPRTR------PRIREAGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred EeCCccccCChHHHHHHHHHHHHHHhc------CCEEEEECCCChH------HHHHHHHHhhccCCCCEEEECCcCHHHH
Confidence 8888764 79999999999988542 4677776665432 677777777765 578999998888999
Q ss_pred HHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHcCCHHHH
Q 012436 350 VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIISMPETER 428 (464)
Q Consensus 350 ~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~~~~~~~ 428 (464)
..+|+.||++|.+|. | ...|||++|+|+|+++..+...+.+.. +.++.++ |+++++++|.++++ ++..+
T Consensus 272 ~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~----g~~~~~~~~~~~i~~~i~~ll~-~~~~~ 341 (363)
T cd03786 272 LLLLKNADLVLTDSG----G-IQEEASFLGVPVLNLRDRTERPETVES----GTNVLVGTDPEAILAAIEKLLS-DEFAY 341 (363)
T ss_pred HHHHHcCcEEEEcCc----c-HHhhhhhcCCCEEeeCCCCccchhhhe----eeEEecCCCHHHHHHHHHHHhc-Cchhh
Confidence 999999999999974 3 478999999999999754433455544 3444444 79999999999999 88776
Q ss_pred HHHH
Q 012436 429 LEMA 432 (464)
Q Consensus 429 ~~~~ 432 (464)
.++.
T Consensus 342 ~~~~ 345 (363)
T cd03786 342 SLMS 345 (363)
T ss_pred hcCC
Confidence 6653
No 89
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.85 E-value=1.8e-19 Score=174.38 Aligned_cols=342 Identities=13% Similarity=0.134 Sum_probs=204.0
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
+|||++..... ||.-.-.. ++++|.+.+++++++...+. ..... ++. ...++..++...+.
T Consensus 1 ~~ki~i~~Ggt---~G~i~~a~-l~~~L~~~~~~~~~~~~~~~------~~~~~-----~~~--~~~~~~~l~~~g~~-- 61 (380)
T PRK00025 1 PLRIAIVAGEV---SGDLLGAG-LIRALKARAPNLEFVGVGGP------RMQAA-----GCE--SLFDMEELAVMGLV-- 61 (380)
T ss_pred CceEEEEecCc---CHHHHHHH-HHHHHHhcCCCcEEEEEccH------HHHhC-----CCc--cccCHHHhhhccHH--
Confidence 47888865443 45555554 99999998877776655432 11111 110 00111111111110
Q ss_pred ccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhcccccccccCC
Q 012436 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNN 190 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~ 190 (464)
..+......+.....+.+.+++.+||+||.+....+... .++..++|++.+.+...
T Consensus 62 ---~~~~~~~~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~------------------ 120 (380)
T PRK00025 62 ---EVLPRLPRLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSV------------------ 120 (380)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCch------------------
Confidence 112222334556677888899999999987642222211 34567999987655110
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccC-------CC
Q 012436 191 NASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVL-------PL 263 (464)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~-------~~ 263 (464)
|... . . ..+.+.+.+|.+++.|+..++.+.+. +. ++.++.|++........ ..
T Consensus 121 --------~~~~-~----~----~~~~~~~~~d~i~~~~~~~~~~~~~~-g~--~~~~~G~p~~~~~~~~~~~~~~~~~l 180 (380)
T PRK00025 121 --------WAWR-Q----G----RAFKIAKATDHVLALFPFEAAFYDKL-GV--PVTFVGHPLADAIPLLPDRAAARARL 180 (380)
T ss_pred --------hhcC-c----h----HHHHHHHHHhhheeCCccCHHHHHhc-CC--CeEEECcCHHHhcccccChHHHHHHc
Confidence 0000 0 0 01223477899999999999888764 32 46677776543211100 01
Q ss_pred CCCCCCcEE-EEEecc-CCC-CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhc-CCCCcEE
Q 012436 264 ERSTEYPAI-ISVAQF-RPE-KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL-KVDGNVE 339 (464)
Q Consensus 264 ~~~~~~~~i-~~~G~~-~~~-K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~-~l~~~v~ 339 (464)
..+++.+++ ++.|+- ... +..+.++++++.+.++. |+++++++|+++ ...+++++.++++ ++. +.
T Consensus 181 ~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~----~~~~~ii~~~~~-----~~~~~~~~~~~~~~~~~--v~ 249 (380)
T PRK00025 181 GLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRY----PDLRFVLPLVNP-----KRREQIEEALAEYAGLE--VT 249 (380)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhC----CCeEEEEecCCh-----hhHHHHHHHHhhcCCCC--eE
Confidence 112334554 444532 232 45788999999887665 588999998633 2235667766665 543 44
Q ss_pred EccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe-----------------CCCCCccceecccCCcc
Q 012436 340 FYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH-----------------NSAGPKMDIVLEEDGQQ 402 (464)
Q Consensus 340 ~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~-----------------~~~~~~~~~v~~~~~~~ 402 (464)
+.. +++.++|+.||+++.+| |.+.+|||++|+|+|++ +.++. .+++.+ +.
T Consensus 250 ~~~----~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~---~~ 316 (380)
T PRK00025 250 LLD----GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSL-PNLLAG---RE 316 (380)
T ss_pred EEc----ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeeh-HHHhcC---CC
Confidence 432 57999999999999986 77888999999999987 22222 244433 22
Q ss_pred --ceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 012436 403 --TGFLAQ--NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCH 461 (464)
Q Consensus 403 --~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 461 (464)
.+++.+ |++++++++.++++ |++.++++++++.+..+.. -..-++++.+.+.+.+.+
T Consensus 317 ~~~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 317 LVPELLQEEATPEKLARALLPLLA-DGARRQALLEGFTELHQQL-RCGADERAAQAVLELLKQ 377 (380)
T ss_pred cchhhcCCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhh
Confidence 335543 89999999999999 9999999999886655333 223455555555555443
No 90
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=2.5e-18 Score=164.21 Aligned_cols=225 Identities=28% Similarity=0.351 Sum_probs=184.9
Q ss_pred cCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccC--CCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHh
Q 012436 221 CADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVL--PLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKL 298 (464)
Q Consensus 221 ~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~ 298 (464)
..+.+++.+......+...+. ..++.+++++++.+.+... ..........++++|++.+.||++.+++++..+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~ 228 (381)
T COG0438 150 LADRVIAVSPALKELLEALGV-PNKIVVIPNGIDTEKFAPARIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRG 228 (381)
T ss_pred cccEEEECCHHHHHHHHHhCC-CCCceEecCCcCHHHcCccccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhc
Confidence 578999999988777766643 4478889999998877642 2221121379999999999999999999999998875
Q ss_pred cCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHh
Q 012436 299 DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAA 378 (464)
Q Consensus 299 ~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~ 378 (464)
+++.+.++|.++.. .+.+.....+.+..+++.+.|.++.+++..+++.+|++++||..|++|++++|||++
T Consensus 229 ----~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~ 299 (381)
T COG0438 229 ----PDIKLVIVGDGPER-----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAA 299 (381)
T ss_pred ----CCeEEEEEcCCCcc-----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhc
Confidence 35899999998753 245555777777778999999999888999999999999999889999999999999
Q ss_pred CCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Q 012436 379 GAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAI 455 (464)
Q Consensus 379 G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~ 455 (464)
|+|||+++.++. .+++.+ +.+|++++ +.+++++++..+.+ +++.++.+.+.+++.+ +.|+|+...+++.+++
T Consensus 300 g~pvi~~~~~~~-~e~~~~---~~~g~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (381)
T COG0438 300 GTPVIASDVGGI-PEVVED---GETGLLVPPGDVEELADALEQLLE-DPELREELGEAARERVEEEFSWERIAEQLLELY 374 (381)
T ss_pred CCcEEECCCCCh-HHHhcC---CCceEecCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999976 677776 55677665 58999999999999 8877888887677777 7999999999999999
Q ss_pred HHHHh
Q 012436 456 RPILC 460 (464)
Q Consensus 456 ~~~~~ 460 (464)
.....
T Consensus 375 ~~~~~ 379 (381)
T COG0438 375 EELLA 379 (381)
T ss_pred HHHHh
Confidence 87754
No 91
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.82 E-value=1.2e-18 Score=171.06 Aligned_cols=216 Identities=17% Similarity=0.138 Sum_probs=178.4
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCCC---CCeEEecCCCCCCCCccCCCCCCCCCcEEEEEe--ccCCCCChHHHHHHHHH
Q 012436 219 GSCADLAMVNSSWTQSHIEKLWGIP---DRIKRVYPPCDTSGLQVLPLERSTEYPAIISVA--QFRPEKAHPLQLEAFSV 293 (464)
Q Consensus 219 ~~~ad~vi~~S~~~~~~~~~~~~~~---~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G--~~~~~K~~~~ll~a~~~ 293 (464)
+..+|.+|+.|+...+.+...++.. .++..||++. .... ..........+++++ |+ +.|.++.+++++.+
T Consensus 270 ~~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip~~~-~~~~---~~~s~r~~~~~I~v~idrL-~ek~~~~~I~av~~ 344 (519)
T TIGR03713 270 LSRADLIIVDREDIERLLEENYRENYVEFDISRITPFD-TRLR---LGQSQQLYETEIGFWIDGL-SDEELQQILQQLLQ 344 (519)
T ss_pred hhhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeCccc-eEEe---cChhhcccceEEEEEcCCC-ChHHHHHHHHHHHH
Confidence 3678999999988888887776421 4456677554 3222 112223345788888 99 99999999999999
Q ss_pred HHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC-----------------------------CcEEEccCC
Q 012436 294 ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-----------------------------GNVEFYKNL 344 (464)
Q Consensus 294 l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~-----------------------------~~v~~~g~~ 344 (464)
+.++. |+++|.+.|.+.+. ++.+.++++++++++. .+|.|.|..
T Consensus 345 ~~~~~----p~~~L~~~gy~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy~ 417 (519)
T TIGR03713 345 YILKN----PDYELKILTYNNDN---DITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTTLT 417 (519)
T ss_pred HHhhC----CCeEEEEEEecCch---hHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEecC
Confidence 98887 79999999988542 3456676776666555 789999999
Q ss_pred ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCC
Q 012436 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMP 424 (464)
Q Consensus 345 ~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~ 424 (464)
+..++.+.|+.+.++|.+|..|+++ +.+||+++|+|+| +.+ . .+++.+ +.||++++|.++|++++..+++ +
T Consensus 418 ~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI--nyg-~-~~~V~d---~~NG~li~d~~~l~~al~~~L~-~ 488 (519)
T TIGR03713 418 NEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI--NKV-E-TDYVEH---NKNGYIIDDISELLKALDYYLD-N 488 (519)
T ss_pred CHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee--ecC-C-ceeeEc---CCCcEEeCCHHHHHHHHHHHHh-C
Confidence 8889999999999999999999999 9999999999999 333 4 689999 9999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012436 425 ETERLEMAAAARRRAARFSEQRFYEDFKAAI 455 (464)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 455 (464)
++.++++...+.+.+++||-+++.++|.+++
T Consensus 489 ~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 489 LKNWNYSLAYSIKLIDDYSSENIIERLNELI 519 (519)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhC
Confidence 9999999999999999999999999998753
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.79 E-value=3.9e-17 Score=167.50 Aligned_cols=290 Identities=14% Similarity=0.108 Sum_probs=200.8
Q ss_pred hhhcCC-cEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHH
Q 012436 136 LCKFTP-LYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFF 211 (464)
Q Consensus 136 l~~~~~-Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (464)
.+..++ |+|..|..+...+| +.+ ..+.++-+++|-|..+.++.+.+..+ ..+
T Consensus 226 ~~~~~~gD~VWVHDYHL~LlP~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~r-----------------------~el- 281 (934)
T PLN03064 226 NEHYEEGDVVWCHDYHLMFLPKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPSR-----------------------SEL- 281 (934)
T ss_pred HHhcCCCCEEEEecchhhHHHHHHHHhCCCCcEEEEecCCCCChHHHhhCCcH-----------------------HHH-
Confidence 334455 57777777777777 333 56788999999777655554333200 011
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHHHh----CC------------CCCeEEecCCCCCCCCccCCCCC----------
Q 012436 212 SWMYGLVGSCADLAMVNSSWTQSHIEKLW----GI------------PDRIKRVYPPCDTSGLQVLPLER---------- 265 (464)
Q Consensus 212 ~~~~~~~~~~ad~vi~~S~~~~~~~~~~~----~~------------~~~i~~i~~~~d~~~~~~~~~~~---------- 265 (464)
-..+-.||.|=..+...++.|.+.. +. ..++.++|-|+|.+.+.......
T Consensus 282 ----L~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr 357 (934)
T PLN03064 282 ----LRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELK 357 (934)
T ss_pred ----HHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHH
Confidence 2234678888888888777775421 11 12355678899988776321111
Q ss_pred --CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC---ccHHHHHHHHHHHHhc----CC--
Q 012436 266 --STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK---SDEERLQSLKDKSIEL----KV-- 334 (464)
Q Consensus 266 --~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~---~~~~~~~~l~~~~~~~----~l-- 334 (464)
-.++.+|++++|++..||+...+.|++.+.+++++...++.|+-+...... +..++..++.+++.+. |-
T Consensus 358 ~~~~g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~ 437 (934)
T PLN03064 358 ERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLT 437 (934)
T ss_pred HHhCCceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 135679999999999999999999999988876321123444444432211 2223333444444332 21
Q ss_pred -CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCC----cEEEeCCCCCccceecccCCccceeecC-
Q 012436 335 -DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA----IPIAHNSAGPKMDIVLEEDGQQTGFLAQ- 408 (464)
Q Consensus 335 -~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~----PvI~~~~~~~~~~~v~~~~~~~~g~~~~- 408 (464)
.+-+.+...++.+++..+|+.||++++||..||++++..|||+|+. ++|.|...|... .+ +..+++++
T Consensus 438 w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~-~L-----~~~AllVNP 511 (934)
T PLN03064 438 AVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQ-SL-----GAGAILVNP 511 (934)
T ss_pred cceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHH-Hh-----CCceEEECC
Confidence 1223344568999999999999999999999999999999999944 455588887743 33 24577775
Q ss_pred -CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 012436 409 -NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPIL 459 (464)
Q Consensus 409 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 459 (464)
|+++++++|.++++|+++++++..+..++.+..+++..+++.+++.+.+..
T Consensus 512 ~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 512 WNITEVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988887764
No 93
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=3.6e-16 Score=146.05 Aligned_cols=326 Identities=16% Similarity=0.115 Sum_probs=203.8
Q ss_pred CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccccCcceehhhhchh
Q 012436 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (464)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (464)
||.-.....++++|.++|++ +|.+........ . ......+ .++..++..++.....+..+...+..+.
T Consensus 11 GGHv~pAlAl~~~l~~~g~~-~v~~~~~~~~~e-~----~l~~~~~------~~~~~I~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T COG0707 11 GGHVFPALALAEELAKRGWE-QVIVLGTGDGLE-A----FLVKQYG------IEFELIPSGGLRRKGSLKLLKAPFKLLK 78 (357)
T ss_pred ccchhHHHHHHHHHHhhCcc-EEEEecccccce-e----eeccccC------ceEEEEecccccccCcHHHHHHHHHHHH
Confidence 78999999999999999976 666654332111 1 0111111 2444555444433333333333345566
Q ss_pred hhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHH
Q 012436 128 SVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKI 205 (464)
Q Consensus 128 ~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (464)
....+.+.+++++||+|+++.++...-+ .++..++|++++-.+-. .+.
T Consensus 79 ~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~---------------------------~G~--- 128 (357)
T COG0707 79 GVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAV---------------------------PGL--- 128 (357)
T ss_pred HHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCC---------------------------cch---
Confidence 7788888999999999998888776644 45588999988433110 000
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCc-cCCCCC---CCCCcEEEEEeccCCC
Q 012436 206 VYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQ-VLPLER---STEYPAIISVAQFRPE 281 (464)
Q Consensus 206 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~-~~~~~~---~~~~~~i~~~G~~~~~ 281 (464)
..+...+.++.|.+.-+. ...+..+++..++.+|+..+... +....+ ..++++|+.+|.....
T Consensus 129 --------ank~~~~~a~~V~~~f~~-----~~~~~~~~~~~~tG~Pvr~~~~~~~~~~~~~~~~~~~~~ilV~GGS~Ga 195 (357)
T COG0707 129 --------ANKILSKFAKKVASAFPK-----LEAGVKPENVVVTGIPVRPEFEELPAAEVRKDGRLDKKTILVTGGSQGA 195 (357)
T ss_pred --------hHHHhHHhhceeeecccc-----ccccCCCCceEEecCcccHHhhccchhhhhhhccCCCcEEEEECCcchh
Confidence 113334677777764443 22222256788899998876654 111111 1256788888766555
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEE
Q 012436 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIH 361 (464)
Q Consensus 282 K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ 361 (464)
+.+..++..+.....+ +++++..++.. . .+++++...+++. +...++. +++.++|+.||++|.
T Consensus 196 ~~ln~~v~~~~~~l~~------~~~v~~~~G~~-----~-~~~~~~~~~~~~~---~~v~~f~--~dm~~~~~~ADLvIs 258 (357)
T COG0707 196 KALNDLVPEALAKLAN------RIQVIHQTGKN-----D-LEELKSAYNELGV---VRVLPFI--DDMAALLAAADLVIS 258 (357)
T ss_pred HHHHHHHHHHHHHhhh------CeEEEEEcCcc-----h-HHHHHHHHhhcCc---EEEeeHH--hhHHHHHHhccEEEe
Confidence 5455444444322221 35555554432 1 3455555555543 8889999 889999999999985
Q ss_pred cCCCCCCChHHHHHHHhCCcEEEeCCCCCc---c----ceecccCCccceeecC----CHHHHHHHHHHHHcCCHHHHHH
Q 012436 362 SMIDEHFGISVVEYMAAGAIPIAHNSAGPK---M----DIVLEEDGQQTGFLAQ----NAEEYADAIVKIISMPETERLE 430 (464)
Q Consensus 362 ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~----~~v~~~~~~~~g~~~~----~~~~la~~i~~l~~~~~~~~~~ 430 (464)
= +.++++.|..++|+|+|.-+.+... . ..+.+ .+.+.+.+ +++.+.+.|.++++ +++.+++
T Consensus 259 R----aGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~---~gaa~~i~~~~lt~~~l~~~i~~l~~-~~~~l~~ 330 (357)
T COG0707 259 R----AGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEK---AGAALVIRQSELTPEKLAELILRLLS-NPEKLKA 330 (357)
T ss_pred C----CcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHh---CCCEEEeccccCCHHHHHHHHHHHhc-CHHHHHH
Confidence 4 4478999999999999997655331 1 12223 34555554 58899999999999 9999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHH
Q 012436 431 MAAAARRRAARFSEQRFYEDFKA 453 (464)
Q Consensus 431 ~~~~~~~~~~~~s~~~~~~~~~~ 453 (464)
|.+++++....-..+.+++....
T Consensus 331 m~~~a~~~~~p~aa~~i~~~~~~ 353 (357)
T COG0707 331 MAENAKKLGKPDAAERIADLLLA 353 (357)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999876654555555554443
No 94
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=4.6e-15 Score=136.34 Aligned_cols=356 Identities=17% Similarity=0.122 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHHhhhc--ccccccccceEEEecCCCCCC-C---------CcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 11 VITAVLASILILASHV--HNARRNRTTSVAFFHPNTNDG-G---------GGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 11 ~~~~~~~~~~~~~~~~--~~~~~~~~mkI~~~~~~~~~~-G---------G~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
++.+++.+..++.+.+ +.++.+.+.|.++..+...+. + |-.+.+.-|+++|.+..+++.+++.+...
T Consensus 10 ~~~~p~~~~~l~~R~~~~~~y~~r~~eRfg~~~~~~~~~~p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~- 88 (419)
T COG1519 10 TLALPFIAPRLLYRSFKGPKYRKRLGERFGFYKPPVKPEGPLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTP- 88 (419)
T ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHhcccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCc-
Confidence 5667777777776666 778888778888554444332 1 56677889999999997777776655432
Q ss_pred CCchhHHHHHHhhcCcccCCCceeeeeecccccccccCcceehhhhchhhhHHHHHHhhhcCCcEEE--ecccccccchh
Q 012436 79 AFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYF--DTSGYAFTYPL 156 (464)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~--~~~~~~~~~~~ 156 (464)
.-.+.....++.. +...+++.. ......+.++..+||+++ .+-.|+..+.-
T Consensus 89 ----Tg~e~a~~~~~~~----v~h~YlP~D-------------------~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e 141 (419)
T COG1519 89 ----TGAERAAALFGDS----VIHQYLPLD-------------------LPIAVRRFLRKWRPKLLIIMETELWPNLINE 141 (419)
T ss_pred ----cHHHHHHHHcCCC----eEEEecCcC-------------------chHHHHHHHHhcCCCEEEEEeccccHHHHHH
Confidence 2223334334432 233333331 123445668889999665 45566666556
Q ss_pred hhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHH
Q 012436 157 ARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHI 236 (464)
Q Consensus 157 ~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~ 236 (464)
++..++|.+.--- .++..+..-++.+..+.+.+++..|.|++.|+..++.+
T Consensus 142 ~~~~~~p~~LvNa-----------------------------RLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf 192 (419)
T COG1519 142 LKRRGIPLVLVNA-----------------------------RLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRF 192 (419)
T ss_pred HHHcCCCEEEEee-----------------------------eechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHH
Confidence 7788999987433 01111122233444566777899999999999999999
Q ss_pred HHHhCCCCCeEEecCC-CCCCCCcc-------CCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEE
Q 012436 237 EKLWGIPDRIKRVYPP-CDTSGLQV-------LPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQ 308 (464)
Q Consensus 237 ~~~~~~~~~i~~i~~~-~d~~~~~~-------~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~ 308 (464)
.+.+ ..++.+..|= .|.+.... .........++++..++ ....-+.++++++.++++. |+..++
T Consensus 193 ~~LG--a~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaST--H~GEeei~l~~~~~l~~~~----~~~llI 264 (419)
T COG1519 193 RSLG--AKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGHRPVWVAAST--HEGEEEIILDAHQALKKQF----PNLLLI 264 (419)
T ss_pred HhcC--CcceEEecceeecCCCChhhHHHHHHHHHhcCCCCceEEEecC--CCchHHHHHHHHHHHHhhC----CCceEE
Confidence 9875 3346555541 22221110 01111122578888886 3444567899999999987 689999
Q ss_pred EEcCCCCCccHHHHHHHHHHHHhcCCC-------------CcEEEccCCChhHHHHHHhcCcEEEE-cCCCCCCChHHHH
Q 012436 309 FVGSCRNKSDEERLQSLKDKSIELKVD-------------GNVEFYKNLLYRDLVKLLGGAVVGIH-SMIDEHFGISVVE 374 (464)
Q Consensus 309 i~G~~~~~~~~~~~~~l~~~~~~~~l~-------------~~v~~~g~~~~~~~~~~l~~ad~~v~-ps~~e~~~~~~~E 374 (464)
++=..++ ..+.+++++++.|+. .+|.+...+ -|+..+|+.+|+.+. -|..+-.|--++|
T Consensus 265 lVPRHpE-----Rf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dtm--GEL~l~y~~adiAFVGGSlv~~GGHN~LE 337 (419)
T COG1519 265 LVPRHPE-----RFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTM--GELGLLYGIADIAFVGGSLVPIGGHNPLE 337 (419)
T ss_pred EecCChh-----hHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecH--hHHHHHHhhccEEEECCcccCCCCCChhh
Confidence 9988774 368888899888764 144444555 799999999998654 5655566788999
Q ss_pred HHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012436 375 YMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEMAAAARRRA 439 (464)
Q Consensus 375 a~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 439 (464)
+.++|+|||.-..-....|+.......+.++.++|.+.+++++..+++ |++.++++++++.+.+
T Consensus 338 pa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~-~~~~r~~~~~~~~~~v 401 (419)
T COG1519 338 PAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVELLLA-DEDKREAYGRAGLEFL 401 (419)
T ss_pred HHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECCHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 999999999976544434544332225778889998899999998888 9999999999999888
No 95
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.73 E-value=4.5e-16 Score=149.42 Aligned_cols=258 Identities=14% Similarity=0.055 Sum_probs=163.0
Q ss_pred chhhhHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhh
Q 012436 125 SFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLS 201 (464)
Q Consensus 125 ~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (464)
.+.....+.+.+++.+||+|+.+.+.++... .++..|+|++.++ .|. .| .|..
T Consensus 74 ~~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~P~--------~w---------------aw~~ 129 (385)
T TIGR00215 74 LLKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-SPQ--------VW---------------AWRK 129 (385)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-CCc--------Hh---------------hcCc
Confidence 3445567778899999999997665333322 4457899999765 333 11 0110
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCc--cC------CCCCCCCCcEEE
Q 012436 202 QCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQ--VL------PLERSTEYPAII 273 (464)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~--~~------~~~~~~~~~~i~ 273 (464)
. -.+.+.+.+|.+++.++...+.+.+. + .+..++.||+...... .. ....+++.++++
T Consensus 130 ~-----------~~r~l~~~~d~v~~~~~~e~~~~~~~-g--~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Il 195 (385)
T TIGR00215 130 W-----------RAKKIEKATDFLLAILPFEKAFYQKK-N--VPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLA 195 (385)
T ss_pred c-----------hHHHHHHHHhHhhccCCCcHHHHHhc-C--CCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEE
Confidence 0 02444588999999999999988754 2 3566788887332211 00 011223456665
Q ss_pred EE-e-ccCC-CCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHH
Q 012436 274 SV-A-QFRP-EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLV 350 (464)
Q Consensus 274 ~~-G-~~~~-~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~ 350 (464)
.. | |..+ .|++..++++++.+.+.. |++++++.+.... ..+.+++..++++....|.+.+. ++.
T Consensus 196 vl~GSR~aei~k~~~~ll~a~~~l~~~~----p~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~----~~~ 262 (385)
T TIGR00215 196 LLPGSRGSEVEKLFPLFLKAAQLLEQQE----PDLRRVLPVVNFK-----RRLQFEQIKAEYGPDLQLHLIDG----DAR 262 (385)
T ss_pred EECCCCHHHHHHhHHHHHHHHHHHHHhC----CCeEEEEEeCCch-----hHHHHHHHHHHhCCCCcEEEECc----hHH
Confidence 54 3 4444 688999999999987765 6888877654321 12445555555555556665543 456
Q ss_pred HHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccce----------------ecccCCccce-eec--C-CH
Q 012436 351 KLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDI----------------VLEEDGQQTG-FLA--Q-NA 410 (464)
Q Consensus 351 ~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~----------------v~~~~~~~~g-~~~--~-~~ 410 (464)
.+|+.||++|.+| |.+.+|+|++|+|+|...-....... +.+ .+.. .+. + ++
T Consensus 263 ~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~---~~~~pel~q~~~~~ 334 (385)
T TIGR00215 263 KAMFAADAALLAS-----GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILAN---RLLVPELLQEECTP 334 (385)
T ss_pred HHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcC---CccchhhcCCCCCH
Confidence 7999999999998 77777999999999987322111111 111 1111 111 2 79
Q ss_pred HHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHcc
Q 012436 411 EEYADAIVKIISMPE----TERLEMAAAARRRAARF 442 (464)
Q Consensus 411 ~~la~~i~~l~~~~~----~~~~~~~~~~~~~~~~~ 442 (464)
+.+++.+.++++ |+ +.++++.+...+..+..
T Consensus 335 ~~l~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~l 369 (385)
T TIGR00215 335 HPLAIALLLLLE-NGLKAYKEMHRERQFFEELRQRI 369 (385)
T ss_pred HHHHHHHHHHhc-CCcccHHHHHHHHHHHHHHHHHh
Confidence 999999999999 99 88888777666554444
No 96
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.73 E-value=9.7e-18 Score=136.98 Aligned_cols=130 Identities=31% Similarity=0.394 Sum_probs=94.8
Q ss_pred CcEEEEEeccCCCCChHHHHH-HHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 269 YPAIISVAQFRPEKAHPLQLE-AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~-a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
-++++++|++.+.|+++.+++ +++++.++. |+++|+|+|.+++ ++++. . .++|+++|++ +
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~----p~~~l~i~G~~~~--------~l~~~-~----~~~v~~~g~~--~ 62 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKH----PDIELIIIGNGPD--------ELKRL-R----RPNVRFHGFV--E 62 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHS----TTEEEEEECESS---------HHCCH-H----HCTEEEE-S---H
T ss_pred cccccccccccccccccchhhhHHHHHHHHC----cCEEEEEEeCCHH--------HHHHh-c----CCCEEEcCCH--H
Confidence 367899999999999999999 999999887 6999999999762 24443 1 3589999999 6
Q ss_pred HHHHHHhcCcEEEEcCC-CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccce-eecCCHHHHHHHHHHHHc
Q 012436 348 DLVKLLGGAVVGIHSMI-DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTG-FLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~la~~i~~l~~ 422 (464)
++.+++++||+++.|+. .++++.+++|||++|+|||+++. +. .++... .+.| ++.+|+++++++|.++++
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~-~~~~~~---~~~~~~~~~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GA-EGIVEE---DGCGVLVANDPEELAEAIERLLN 134 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HC-HCHS------SEEEE-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-ch-hhheee---cCCeEEECCCHHHHHHHHHHHhc
Confidence 99999999999999985 67899999999999999999998 44 455543 3444 444599999999999986
No 97
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.65 E-value=1.2e-13 Score=137.77 Aligned_cols=237 Identities=16% Similarity=0.123 Sum_probs=176.7
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHHHhCC--------CCCeEEecCCCCCCCCccCC-----------C----------
Q 012436 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGI--------PDRIKRVYPPCDTSGLQVLP-----------L---------- 263 (464)
Q Consensus 213 ~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~--------~~~i~~i~~~~d~~~~~~~~-----------~---------- 263 (464)
.|.+..+..||.+.++|+...+...+.++. ..++.-|-||+|...+.+.. .
T Consensus 254 nm~~lai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~ 333 (601)
T TIGR02094 254 NMTVLALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDLYERYLGENWRELLADEEL 333 (601)
T ss_pred eHHHHHHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCCHHHHHHHHHhCCcchhccchhhhh
Confidence 456778899999999999988755443321 23477789999987543110 0
Q ss_pred --------------------------------------------------CCCCCCcEEEEEeccCCCCChHHHHHHHHH
Q 012436 264 --------------------------------------------------ERSTEYPAIISVAQFRPEKAHPLQLEAFSV 293 (464)
Q Consensus 264 --------------------------------------------------~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~ 293 (464)
...++.+.+++++|+...||.++++.++..
T Consensus 334 ~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig~v~Rl~~yKr~dLil~~i~~ 413 (601)
T TIGR02094 334 WEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFARRFATYKRADLIFRDLER 413 (601)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCcEEEEEEcchhhhhHHHHHHHHHH
Confidence 012345689999999999999999999988
Q ss_pred HHHHhcCCCCCcEEEEEcCCCCC--ccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEE-cCC-CCCCC
Q 012436 294 ALRKLDADLPRPRLQFVGSCRNK--SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIH-SMI-DEHFG 369 (464)
Q Consensus 294 l~~~~~~~~p~~~l~i~G~~~~~--~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~-ps~-~e~~~ 369 (464)
+.+...+...++++++.|.+... ...++.+.+.+++++...+++|.|+...+.+--..+++.||++++ ||. .|++|
T Consensus 414 l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacG 493 (601)
T TIGR02094 414 LARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASG 493 (601)
T ss_pred HHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCch
Confidence 87521100027899999987532 123466777777776556779999888888888889999999999 998 99999
Q ss_pred hHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--------------CHHHHHHHHHHHH-----cCC-----H
Q 012436 370 ISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--------------NAEEYADAIVKII-----SMP-----E 425 (464)
Q Consensus 370 ~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--------------~~~~la~~i~~l~-----~~~-----~ 425 (464)
++-+-||..|.+.+++--|.. .|.. + +.+||.+. |.+++.++|++.+ + + |
T Consensus 494 tsqMka~~nGgL~~sv~DG~~-~E~~-~---~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~-~~~~~~p 567 (601)
T TIGR02094 494 TSGMKAAMNGVLNLSILDGWW-GEGY-D---GDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYD-RDEKGIP 567 (601)
T ss_pred HHHHHHHHcCCceeecccCcc-cccC-C---CCcEEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhc-CCcccCc
Confidence 999999999999999876555 3443 4 57898764 6777888886544 2 3 4
Q ss_pred HHHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Q 012436 426 TERLEMAAAARRRA-ARFSEQRFYEDFKAAI 455 (464)
Q Consensus 426 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~ 455 (464)
..+.++.+++.+.. ..|||++++++|.+.|
T Consensus 568 ~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 568 ADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 45778888887765 6899999999999876
No 98
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.63 E-value=1.5e-13 Score=133.29 Aligned_cols=287 Identities=19% Similarity=0.177 Sum_probs=172.5
Q ss_pred hhhcCC-cEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHH
Q 012436 136 LCKFTP-LYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFF 211 (464)
Q Consensus 136 l~~~~~-Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (464)
.+..++ |+|..|..+...+| +.+ ..+.++.+++|-|..+.++.+.+.. ...
T Consensus 136 ~~~~~~~D~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~e~fr~lP~-----------------------r~e-- 190 (474)
T PF00982_consen 136 AEVYRPGDLVWVHDYHLMLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPW-----------------------REE-- 190 (474)
T ss_dssp GGG--TT-EEEEESGGGTTHHHHHHHTT--SEEEEEE-S----HHHHTTSTT-----------------------HHH--
T ss_pred HHhCcCCCEEEEeCCcHHHHHHHHHhhcCCceEeeEEecCCCCHHHHhhCCc-----------------------HHH--
Confidence 333444 67766777777766 333 5778999999987765555433220 001
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHH----HhCC---C-----------CCeEEecCCCCCCCCccCCCCC--------
Q 012436 212 SWMYGLVGSCADLAMVNSSWTQSHIEK----LWGI---P-----------DRIKRVYPPCDTSGLQVLPLER-------- 265 (464)
Q Consensus 212 ~~~~~~~~~~ad~vi~~S~~~~~~~~~----~~~~---~-----------~~i~~i~~~~d~~~~~~~~~~~-------- 265 (464)
+ -..+-.||.|-..+...++.+.. ..+. . .++.+.|.|+|++.+.......
T Consensus 191 --i-L~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~ 267 (474)
T PF00982_consen 191 --I-LRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEE 267 (474)
T ss_dssp --H-HHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHH
T ss_pred --H-HHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHH
Confidence 1 22347899999999988877743 3222 1 1255678888887665221110
Q ss_pred ----CCC-CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCcc---HHHHHHHHHHHHh----cC
Q 012436 266 ----STE-YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSD---EERLQSLKDKSIE----LK 333 (464)
Q Consensus 266 ----~~~-~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~---~~~~~~l~~~~~~----~~ 333 (464)
-.+ ..+|+-+.|++..||+..=+.|++++.+++++...++.|+-++..+.... .++.+++++++.+ +|
T Consensus 268 l~~~~~~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g 347 (474)
T PF00982_consen 268 LREKFKGKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYG 347 (474)
T ss_dssp HHHHTTT-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhcCCCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 134 48899999999999999999999999988765556788888876433222 2455555555543 33
Q ss_pred CC---CcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCc----EEEeCCCCCccceecccCCccceee
Q 012436 334 VD---GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAI----PIAHNSAGPKMDIVLEEDGQQTGFL 406 (464)
Q Consensus 334 l~---~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~P----vI~~~~~~~~~~~v~~~~~~~~g~~ 406 (464)
-. +-+.+.+.++.+++..+|+.||+++.+|..+|..++..|+.+|..+ +|.|...|.. +.+. +..++
T Consensus 348 ~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa-~~L~-----~~al~ 421 (474)
T PF00982_consen 348 TPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAA-EQLS-----EAALL 421 (474)
T ss_dssp BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGG-GT-T-----TS-EE
T ss_pred cCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHH-HHcC-----CccEE
Confidence 22 2345567789999999999999999999999999999999999664 7778877773 3332 23355
Q ss_pred cC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 407 AQ--NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 407 ~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
++ |++++|++|.++++|.+++++...+..++.+..++...+++.+++.++
T Consensus 422 VNP~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 422 VNPWDIEEVADAIHEALTMPPEERKERHARLREYVREHDVQWWAESFLRDLK 473 (474)
T ss_dssp E-TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhCCHHHHHHHHHHHhh
Confidence 54 999999999999999888888888888888899999999999887765
No 99
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.62 E-value=8.5e-14 Score=133.65 Aligned_cols=247 Identities=16% Similarity=0.132 Sum_probs=148.6
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC------------------------CC-CC
Q 012436 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------------------------ER-ST 267 (464)
Q Consensus 213 ~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~------------------------~~-~~ 267 (464)
.+|+.+.+.||.+.++|+-++.+.....+.... .|+|||++.+.+..... .. .+
T Consensus 213 ~iEraaA~~AdvFTTVSeITa~Ea~~LL~r~pD-vV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d 291 (633)
T PF05693_consen 213 SIERAAAHYADVFTTVSEITAKEAEHLLKRKPD-VVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLD 291 (633)
T ss_dssp HHHHHHHHHSSEEEESSHHHHHHHHHHHSS--S-EE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GG
T ss_pred HHHHHHHHhcCeeeehhhhHHHHHHHHhCCCCC-EEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCcc
Confidence 578899999999999999999999988865444 46899999876652110 00 13
Q ss_pred CCcEEEEEeccC-CCCChHHHHHHHHHHHHHhcCCCCCc---EEEEEcCCCCCcc-------------------------
Q 012436 268 EYPAIISVAQFR-PEKAHPLQLEAFSVALRKLDADLPRP---RLQFVGSCRNKSD------------------------- 318 (464)
Q Consensus 268 ~~~~i~~~G~~~-~~K~~~~ll~a~~~l~~~~~~~~p~~---~l~i~G~~~~~~~------------------------- 318 (464)
+...|...||.+ ..||+|.+|+|+.+|....+....+. .|+++=.....-+
T Consensus 292 ~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g 371 (633)
T PF05693_consen 292 KTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIG 371 (633)
T ss_dssp GEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 446777889985 57999999999999865422111133 3334332211000
Q ss_pred --------------------HH----------------------------HHHHHHHHHHhcCCC----Cc--EEEccC-
Q 012436 319 --------------------EE----------------------------RLQSLKDKSIELKVD----GN--VEFYKN- 343 (464)
Q Consensus 319 --------------------~~----------------------------~~~~l~~~~~~~~l~----~~--v~~~g~- 343 (464)
.+ ..+.+-+.++++++. ++ |.|++.
T Consensus 372 ~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~y 451 (633)
T PF05693_consen 372 KRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEY 451 (633)
T ss_dssp HHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S-
T ss_pred HHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeecc
Confidence 00 011122222222221 33 344431
Q ss_pred C------ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCC--ccceee-cC------
Q 012436 344 L------LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDG--QQTGFL-AQ------ 408 (464)
Q Consensus 344 ~------~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~--~~~g~~-~~------ 408 (464)
+ =.-+..+++..||+.|+||.+|++|.+.+|+.++|+|.|+|+..|. ...+.+... ...|+. ++
T Consensus 452 L~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGF-G~~~~~~~~~~~~~GV~VvdR~~~n~ 530 (633)
T PF05693_consen 452 LSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGF-GCWMQEHIEDPEEYGVYVVDRRDKNY 530 (633)
T ss_dssp --TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHH-HHHHHTTS-HHGGGTEEEE-SSSS-H
T ss_pred ccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhH-HHHHHHhhccCcCCcEEEEeCCCCCH
Confidence 1 1247888999999999999999999999999999999999999887 333332111 235543 32
Q ss_pred --CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 012436 409 --NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCH 461 (464)
Q Consensus 409 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 461 (464)
..+++++.|.++..+++.++..+++++.+..+..+|+.+...|.+.++-.+++
T Consensus 531 ~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL~~ 585 (633)
T PF05693_consen 531 DESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLALRR 585 (633)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 35566677777777788888888888877779999999999999999887765
No 100
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.61 E-value=2.3e-13 Score=130.21 Aligned_cols=289 Identities=13% Similarity=0.123 Sum_probs=203.3
Q ss_pred hhhcCC-cEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHH
Q 012436 136 LCKFTP-LYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFF 211 (464)
Q Consensus 136 l~~~~~-Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (464)
.+..++ |+|..|..+...+| +.+ ..+.++.+++|-|..+.++.+.+..+ ..+
T Consensus 118 ~~~~~~~D~VWVHDYhL~llp~~LR~~~~~~~IgFFlHiPFPs~eifr~LP~r-----------------------~ei- 173 (474)
T PRK10117 118 LPLLKDDDIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPFPTPEIFNALPPH-----------------------DEL- 173 (474)
T ss_pred HHhcCCCCEEEEeccHhhHHHHHHHHhCCCCcEEEEEeCCCCChHHHhhCCCh-----------------------HHH-
Confidence 334454 67776777666666 333 56778999999777655554333210 011
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHHHh----C-------------CCCCeEEecCCCCCCCCccCCCC----------
Q 012436 212 SWMYGLVGSCADLAMVNSSWTQSHIEKLW----G-------------IPDRIKRVYPPCDTSGLQVLPLE---------- 264 (464)
Q Consensus 212 ~~~~~~~~~~ad~vi~~S~~~~~~~~~~~----~-------------~~~~i~~i~~~~d~~~~~~~~~~---------- 264 (464)
-..+-.+|.|=..+...++.+.+.. + ..-++.+.|-|+|.+.+......
T Consensus 174 ----l~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr 249 (474)
T PRK10117 174 ----LEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLK 249 (474)
T ss_pred ----HHHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHH
Confidence 1223567888888887776665421 1 12235567888888776532111
Q ss_pred -CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC---ccHHHHHHHHHHHHh----cCCC-
Q 012436 265 -RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK---SDEERLQSLKDKSIE----LKVD- 335 (464)
Q Consensus 265 -~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~---~~~~~~~~l~~~~~~----~~l~- 335 (464)
.-.++..|+-+.|++..||+..=++|++.+.+++++...++.|+-+...+-. +..++..++++++.+ +|-.
T Consensus 250 ~~~~~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~ 329 (474)
T PRK10117 250 AELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLG 329 (474)
T ss_pred HHcCCCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 0135678999999999999999999999999887665567788877653322 223444555555544 3322
Q ss_pred --CcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCC-----cEEEeCCCCCccceecccCCccceeecC
Q 012436 336 --GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA-----IPIAHNSAGPKMDIVLEEDGQQTGFLAQ 408 (464)
Q Consensus 336 --~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~-----PvI~~~~~~~~~~~v~~~~~~~~g~~~~ 408 (464)
+-..+...++.+++..+|+.||+++.++..+|..++..|+.+|.. ..|.|...|..+++ ++ .++++
T Consensus 330 w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L------~~-AllVN 402 (474)
T PRK10117 330 WTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL------TS-ALIVN 402 (474)
T ss_pred ceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccchHHHh------CC-CeEEC
Confidence 223345678999999999999999999999999999999999965 37888877774443 12 45554
Q ss_pred --CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 012436 409 --NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPIL 459 (464)
Q Consensus 409 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 459 (464)
|.++++++|.++++|.++++++..+..++.+..++....++.+++.+.++.
T Consensus 403 P~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 403 PYDRDEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLKQIV 455 (474)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhh
Confidence 999999999999999899998888888888899999999999998887764
No 101
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.59 E-value=4e-13 Score=129.11 Aligned_cols=357 Identities=15% Similarity=0.086 Sum_probs=200.4
Q ss_pred CcchhhHHHHHHhhhhCCCCceE--EEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccccCcceehhhh-c
Q 012436 49 GGERVLWCAVKAIQEESPDLDCI--VYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQ-S 125 (464)
Q Consensus 49 G~~~~~~~l~~~L~~~g~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 125 (464)
|-......++++|.+...+++|. =+.+.. ..+... .+... .++..++...+........+..... .
T Consensus 8 ged~~a~ai~~~l~~~~~~~~v~~~p~vG~~----~~~e~~-----~ip~~--g~~~~~~sgg~~~~~~~~~~~~~~~gl 76 (396)
T TIGR03492 8 GEDLIAARIAKALLQLSPDLNLEALPLVGEG----RAYQNL-----GIPII--GPTKELPSGGFSYQSLRGLLRDLRAGL 76 (396)
T ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeCcccCC----HHHhhC-----CCcee--CCCCCCCCCCccCCCHHHHHHHHHhhH
Confidence 67778899999999853335655 133332 222111 11110 0223333333332222233333344 5
Q ss_pred hhhhHHHHHHhhhc--CCcEEEecccccccchhhhccCceEEE-EeeCCcchhhhhhcccccccccCCCcccccchhhhH
Q 012436 126 FGSVYLSWEALCKF--TPLYYFDTSGYAFTYPLARIFGCRVIC-YTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQ 202 (464)
Q Consensus 126 ~~~~~~~~~~l~~~--~~Dvv~~~~~~~~~~~~~~~~~~p~v~-~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (464)
+...+..++.+++. +||+|+...++. .+..++..++|+++ -.|.... .|... ...+...++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~-------~~~~~------~~~~~~~~~~~ 142 (396)
T TIGR03492 77 VGLTLGQWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDY-------YWESG------PRRSPSDEYHR 142 (396)
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccce-------eecCC------CCCccchhhhc
Confidence 56677888889999 999999888876 32367789999877 3352211 10000 00000011111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEE-EEEecc--C
Q 012436 203 CKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAI-ISVAQF--R 279 (464)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i-~~~G~~--~ 279 (464)
+.-..+..+ ...+...+.||.+.+..+...+.+.+. | .++.++.||+-............++.+++ +..|+- +
T Consensus 143 ~~G~~~~p~-e~n~l~~~~a~~v~~~~~~t~~~l~~~-g--~k~~~vGnPv~d~l~~~~~~~l~~~~~~lllLpGSR~ae 218 (396)
T TIGR03492 143 LEGSLYLPW-ERWLMRSRRCLAVFVRDRLTARDLRRQ-G--VRASYLGNPMMDGLEPPERKPLLTGRFRIALLPGSRPPE 218 (396)
T ss_pred cCCCccCHH-HHHHhhchhhCEEeCCCHHHHHHHHHC-C--CeEEEeCcCHHhcCccccccccCCCCCEEEEECCCCHHH
Confidence 100010111 012444589999999999999999765 3 48888999874433211111112233444 444443 2
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC--------------CcEEEccCCC
Q 012436 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD--------------GNVEFYKNLL 345 (464)
Q Consensus 280 ~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~--------------~~v~~~g~~~ 345 (464)
..+++..++++++.+.++ +++.+++.-.+... .+.+++...+.++. +++.+..+.
T Consensus 219 ~~~~lp~~l~al~~L~~~-----~~~~~v~~~~~~~~-----~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~- 287 (396)
T TIGR03492 219 AYRNLKLLLRALEALPDS-----QPFVFLAAIVPSLS-----LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGR- 287 (396)
T ss_pred HHccHHHHHHHHHHHhhC-----CCeEEEEEeCCCCC-----HHHHHHHHHhcCceecCCccccchhhccCceEEEech-
Confidence 336778999999998644 37777665433211 14455555544432 235665555
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCcc--ceeccc--CCccceeecC-CHHHHHHHHHHH
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKM--DIVLEE--DGQQTGFLAQ-NAEEYADAIVKI 420 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~--~~v~~~--~~~~~g~~~~-~~~~la~~i~~l 420 (464)
.++.++|+.||++|..| |.+..|++++|+|+|.....+... .+.... ..+....+.+ +++.+++++.++
T Consensus 288 -~~~~~~l~~ADlvI~rS-----Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~l 361 (396)
T TIGR03492 288 -GAFAEILHWADLGIAMA-----GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQL 361 (396)
T ss_pred -HhHHHHHHhCCEEEECc-----CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHH
Confidence 78999999999999774 455599999999999987443311 111110 0012223344 889999999999
Q ss_pred HcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHH
Q 012436 421 ISMPETERLEMAAAARRRA-ARFSEQRFYEDFK 452 (464)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~ 452 (464)
++ |++.++++.+++++.. +....+.+++.+.
T Consensus 362 l~-d~~~~~~~~~~~~~~lg~~~a~~~ia~~i~ 393 (396)
T TIGR03492 362 LA-DPELLERCRRNGQERMGPPGASARIAESIL 393 (396)
T ss_pred Hc-CHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99 9988888875555444 4444454544433
No 102
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.57 E-value=7e-13 Score=125.61 Aligned_cols=298 Identities=10% Similarity=0.007 Sum_probs=169.3
Q ss_pred CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccccCcceehhhhchh
Q 012436 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (464)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (464)
||.-.-...++++|.+.| ++|..++...+.. .+.....++ .++.+....+.....+..+......+.
T Consensus 12 GGHi~Pala~a~~l~~~g--~~v~~vg~~~~~e-----~~l~~~~g~------~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (352)
T PRK12446 12 AGHVTPNLAIIPYLKEDN--WDISYIGSHQGIE-----KTIIEKENI------PYYSISSGKLRRYFDLKNIKDPFLVMK 78 (352)
T ss_pred HHHHHHHHHHHHHHHhCC--CEEEEEECCCccc-----cccCcccCC------cEEEEeccCcCCCchHHHHHHHHHHHH
Confidence 688888899999999988 6666666443211 111111122 333333222111111112223333445
Q ss_pred hhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHH
Q 012436 128 SVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKI 205 (464)
Q Consensus 128 ~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (464)
...++.+++++++||+||++.++..... .++..++|++++-.+.. ..
T Consensus 79 ~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~---------------------------~g---- 127 (352)
T PRK12446 79 GVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT---------------------------PG---- 127 (352)
T ss_pred HHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC---------------------------cc----
Confidence 6667788899999999998777665322 66689999977333110 00
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCC------CCCCCCCcEEEEEeccC
Q 012436 206 VYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP------LERSTEYPAIISVAQFR 279 (464)
Q Consensus 206 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~------~~~~~~~~~i~~~G~~~ 279 (464)
...+...+.++.+.+.-+...+. ++ .+++.++.+|+..+...... ....+++++++.+|.-.
T Consensus 128 -------~~nr~~~~~a~~v~~~f~~~~~~----~~-~~k~~~tG~Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~ 195 (352)
T PRK12446 128 -------LANKIALRFASKIFVTFEEAAKH----LP-KEKVIYTGSPVREEVLKGNREKGLAFLGFSRKKPVITIMGGSL 195 (352)
T ss_pred -------HHHHHHHHhhCEEEEEccchhhh----CC-CCCeEEECCcCCcccccccchHHHHhcCCCCCCcEEEEECCcc
Confidence 11244457888888765443322 22 36788888988765432111 11124456777776655
Q ss_pred CCCChHHHH-HHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcE
Q 012436 280 PEKAHPLQL-EAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVV 358 (464)
Q Consensus 280 ~~K~~~~ll-~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~ 358 (464)
..+.+..++ +++..+.. ++++++..+..+ .++.. ... .++...++. .+++.++|+.||+
T Consensus 196 Ga~~in~~~~~~l~~l~~-------~~~vv~~~G~~~------~~~~~---~~~---~~~~~~~f~-~~~m~~~~~~adl 255 (352)
T PRK12446 196 GAKKINETVREALPELLL-------KYQIVHLCGKGN------LDDSL---QNK---EGYRQFEYV-HGELPDILAITDF 255 (352)
T ss_pred chHHHHHHHHHHHHhhcc-------CcEEEEEeCCch------HHHHH---hhc---CCcEEecch-hhhHHHHHHhCCE
Confidence 555564433 33444421 455555433211 11111 111 134445664 2579999999999
Q ss_pred EEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cc-----eecccCCccceeecC----CHHHHHHHHHHHHcCCHH
Q 012436 359 GIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MD-----IVLEEDGQQTGFLAQ----NAEEYADAIVKIISMPET 426 (464)
Q Consensus 359 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~-----~v~~~~~~~~g~~~~----~~~~la~~i~~l~~~~~~ 426 (464)
+|.- +-+.++.|++++|+|.|........ .+ .+.+ .+.+.... +++.+.+++.++++ |++
T Consensus 256 vIsr----~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~---~g~~~~l~~~~~~~~~l~~~l~~ll~-~~~ 327 (352)
T PRK12446 256 VISR----AGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER---QGYASVLYEEDVTVNSLIKHVEELSH-NNE 327 (352)
T ss_pred EEEC----CChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH---CCCEEEcchhcCCHHHHHHHHHHHHc-CHH
Confidence 8854 4578899999999999998643110 11 1222 34444432 78999999999998 876
Q ss_pred HHH
Q 012436 427 ERL 429 (464)
Q Consensus 427 ~~~ 429 (464)
.++
T Consensus 328 ~~~ 330 (352)
T PRK12446 328 KYK 330 (352)
T ss_pred HHH
Confidence 653
No 103
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.57 E-value=7.1e-13 Score=127.50 Aligned_cols=194 Identities=10% Similarity=0.104 Sum_probs=144.1
Q ss_pred hcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhc
Q 012436 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLD 299 (464)
Q Consensus 220 ~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~ 299 (464)
.+.|.||+.++...+.+.++++...++.++|-|+-.+ + +. .......+++++. +..+++++.+.+..
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~~~~~~~~ip~g~i~~-~---~~-~~r~~~~~l~~t~-------s~~I~~i~~Lv~~l- 304 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLDNEYQEQISQLGYLYP-F---KK-DNKYRKQALILTN-------SDQIEHLEEIVQAL- 304 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhCcccCceEEEEEEEEe-e---cc-ccCCcccEEEECC-------HHHHHHHHHHHHhC-
Confidence 6789999999999998988887666777777776422 1 11 1123345666662 88899999998887
Q ss_pred CCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhC
Q 012436 300 ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAG 379 (464)
Q Consensus 300 ~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G 379 (464)
|+++|.| |.+.+. .++|.++ .++ + |++..+.....++.++|..||+++..|..|++++++.||++.|
T Consensus 305 ---Pd~~f~I-ga~te~-----s~kL~~L-~~y--~-nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G 371 (438)
T TIGR02919 305 ---PDYHFHI-AALTEM-----SSKLMSL-DKY--D-NVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYN 371 (438)
T ss_pred ---CCcEEEE-EecCcc-----cHHHHHH-Hhc--C-CcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcC
Confidence 8999999 877642 2567676 555 4 5554444444589999999999999999999999999999999
Q ss_pred CcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHH
Q 012436 380 AIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQR 446 (464)
Q Consensus 380 ~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 446 (464)
+|+++.+......+++.+ |.+++ ++++|+++|.++++ +++..++.-..-++.+..-+.+.
T Consensus 372 ~pI~afd~t~~~~~~i~~------g~l~~~~~~~~m~~~i~~lL~-d~~~~~~~~~~q~~~a~~~~~~~ 433 (438)
T TIGR02919 372 LLILGFEETAHNRDFIAS------ENIFEHNEVDQLISKLKDLLN-DPNQFRELLEQQREHANDISKEQ 433 (438)
T ss_pred CcEEEEecccCCcccccC------CceecCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhccCCHHH
Confidence 999999876443555533 55554 99999999999999 99776665555555554445443
No 104
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.52 E-value=2.7e-14 Score=122.27 Aligned_cols=175 Identities=18% Similarity=0.112 Sum_probs=94.1
Q ss_pred EEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccccC
Q 012436 37 VAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTY 116 (464)
Q Consensus 37 I~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (464)
|++++.+....||+|+++.+++++|.+.|| +|.+++.......... ... ........ ..
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G~--~v~v~~~~~~~~~~~~-------~~~---------~~~~~~~~---~~ 59 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRGH--EVTVVSPGVKDPIEEE-------LVK---------IFVKIPYP---IR 59 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT---EEEEEESS-TTS-SST-------EEE---------E---TT-S---ST
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCCC--EEEEEEcCCCccchhh-------ccc---------eeeeeecc---cc
Confidence 567777777779999999999999999995 5555554331111000 000 00000000 00
Q ss_pred cceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEeeCCcchhhhhhcccccccccCCCccccc
Q 012436 117 PRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQ 196 (464)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (464)
+. ....+.....+.+.+++.+||+||.+.............++|.+++.|.+.... ...
T Consensus 60 ~~---~~~~~~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~~~~~v~~~H~~~~~~----~~~-------------- 118 (177)
T PF13439_consen 60 KR---FLRSFFFMRRLRRLIKKEKPDIVHIHGPPAFWIALLACRKVPIVYTIHGPYFER----RFL-------------- 118 (177)
T ss_dssp SS-----HHHHHHHHHHHHHHHHT-SEEECCTTHCCCHHHHHHHCSCEEEEE-HHH--H----HTT--------------
T ss_pred cc---cchhHHHHHHHHHHHHHcCCCeEEecccchhHHHHHhccCCCEEEEeCCCcccc----ccc--------------
Confidence 00 111223345666778888999998766655444332322999999999433100 000
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCC
Q 012436 197 SNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGL 258 (464)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~ 258 (464)
......+.......++...+.+|.++++|+.+++.+.+ ++. +.++.+||||+|.+.|
T Consensus 119 ----~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 119 ----KSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp ----TTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHHH-HT--SS-EEE----B-CCCH
T ss_pred ----ccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHHH-hCCcccCCEEEECCccHHHc
Confidence 00001111222223345579999999999999999999 776 6899999999999876
No 105
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.7e-11 Score=116.86 Aligned_cols=287 Identities=16% Similarity=0.126 Sum_probs=204.3
Q ss_pred hhhcCC-cEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHH
Q 012436 136 LCKFTP-LYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFF 211 (464)
Q Consensus 136 l~~~~~-Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (464)
++..++ |+|..+..+...+| +.+ ....++.+++|-|..+.++.+-+. ....+
T Consensus 142 ~~~~~~gDiIWVhDYhL~L~P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP-----------------------~r~eI- 197 (486)
T COG0380 142 VEIYEPGDIIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPSSEVFRCLP-----------------------WREEI- 197 (486)
T ss_pred HHhcCCCCEEEEEechhhhhHHHHHHhCCCceEEEEEeCCCCCHHHHhhCc-----------------------hHHHH-
Confidence 333343 77776777667766 333 566788899997765444432221 11111
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC------------------CCCeEEecCCCCCCCCccCCCCC--------
Q 012436 212 SWMYGLVGSCADLAMVNSSWTQSHIEKLWGI------------------PDRIKRVYPPCDTSGLQVLPLER-------- 265 (464)
Q Consensus 212 ~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~------------------~~~i~~i~~~~d~~~~~~~~~~~-------- 265 (464)
-..+-.||.|=..++..++.|...... ..++..+|-|+|+..+.......
T Consensus 198 ----l~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~e 273 (486)
T COG0380 198 ----LEGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLE 273 (486)
T ss_pred ----HHHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHH
Confidence 223467899988888887777543211 13456678888887766322111
Q ss_pred -----CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHH---HHHHHHHHHh----cC
Q 012436 266 -----STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEER---LQSLKDKSIE----LK 333 (464)
Q Consensus 266 -----~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~---~~~l~~~~~~----~~ 333 (464)
..+...|+.+.|++.-||+..=+.|++++..++++...++.++-++..+..+.++| ..++++.+.+ +|
T Consensus 274 l~~~~~~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG 353 (486)
T COG0380 274 LKAELGRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFG 353 (486)
T ss_pred HHHHhcCCceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcC
Confidence 13478899999999999999999999999987755555788888887665555443 3344444432 23
Q ss_pred ---CCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhC----CcEEEeCCCCCccceecccCCccceee
Q 012436 334 ---VDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAG----AIPIAHNSAGPKMDIVLEEDGQQTGFL 406 (464)
Q Consensus 334 ---l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G----~PvI~~~~~~~~~~~v~~~~~~~~g~~ 406 (464)
..+-..+.-.++++++..+|+.||+++.++..+|..++..|+.+|- -|.|.|...|...++ . + .++
T Consensus 354 ~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L-~-----~-Ali 426 (486)
T COG0380 354 SLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASEL-R-----D-ALI 426 (486)
T ss_pred CCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchhhh-c-----c-CEe
Confidence 3334455667899999999999999999999999999999999983 368888877774433 1 2 566
Q ss_pred cC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012436 407 AQ--NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRP 457 (464)
Q Consensus 407 ~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 457 (464)
++ |.++++++|.++++|.++++++.-+..++.+..++...+++.+++-+..
T Consensus 427 VNP~d~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 427 VNPWDTKEVADAIKRALTMSLEERKERHEKLLKQVLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred ECCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 65 9999999999999999999888888888888889999999998887765
No 106
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.51 E-value=5.7e-12 Score=130.58 Aligned_cols=289 Identities=13% Similarity=0.080 Sum_probs=201.7
Q ss_pred hhcCC--cEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHH
Q 012436 137 CKFTP--LYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFF 211 (464)
Q Consensus 137 ~~~~~--Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (464)
+..++ |+|..|..+...+| +.+ ....++.+++|-|..+.++.+.+.. ...
T Consensus 196 ~~~~~~~d~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~-----------------------r~e-- 250 (854)
T PLN02205 196 EVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPI-----------------------REE-- 250 (854)
T ss_pred HHhCCCCCEEEEeCchhhHHHHHHHhhCCCCcEEEEecCCCCChHHHhhCCc-----------------------HHH--
Confidence 33455 67776777777777 333 5678899999977765555333220 001
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHH----HhCC----------------CCCeEEecCCCCCCCCccCCCCC------
Q 012436 212 SWMYGLVGSCADLAMVNSSWTQSHIEK----LWGI----------------PDRIKRVYPPCDTSGLQVLPLER------ 265 (464)
Q Consensus 212 ~~~~~~~~~~ad~vi~~S~~~~~~~~~----~~~~----------------~~~i~~i~~~~d~~~~~~~~~~~------ 265 (464)
--..+-.||.|=..+...++.|.+ ..|. .-++.+.|-|+|.+.+.......
T Consensus 251 ---iL~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~ 327 (854)
T PLN02205 251 ---LLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKV 327 (854)
T ss_pred ---HHHHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHH
Confidence 122346789998888888777754 1121 12345678888887664321110
Q ss_pred -------C-CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCC---CccHHHHHHHHHHHHh---
Q 012436 266 -------S-TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN---KSDEERLQSLKDKSIE--- 331 (464)
Q Consensus 266 -------~-~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~---~~~~~~~~~l~~~~~~--- 331 (464)
. .++.+|+-+.|++..||+..=+.|++++.+++++...++.|+-+...+- .+..++..++.+++.+
T Consensus 328 ~~l~~~~~~~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~ 407 (854)
T PLN02205 328 KELIKQFCDQDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINE 407 (854)
T ss_pred HHHHHHhccCCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 1 2468999999999999999999999999998865555667877765332 2233444555555544
Q ss_pred -cCCCC--cEEE-ccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCC-------------------cEEEeCCC
Q 012436 332 -LKVDG--NVEF-YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA-------------------IPIAHNSA 388 (464)
Q Consensus 332 -~~l~~--~v~~-~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~-------------------PvI~~~~~ 388 (464)
+|-.+ -|++ ...++.+|+..+|+.||+++.++..+|..++..|+.+|.. .+|.|...
T Consensus 408 ~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfa 487 (854)
T PLN02205 408 TFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFI 487 (854)
T ss_pred hcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeecc
Confidence 33221 2444 4778999999999999999999999999999999999853 25666666
Q ss_pred CCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 012436 389 GPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 389 ~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
|...++ + ..++++ |++++|++|.++++|.+++++...+..++++..++...+++.+++-+++...
T Consensus 488 Gaa~~L------~-~Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~~~~ 554 (854)
T PLN02205 488 GCSPSL------S-GAIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCR 554 (854)
T ss_pred chhHHh------C-cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 553333 1 245554 9999999999999988888888888888888889999999999888877643
No 107
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.50 E-value=2.3e-11 Score=123.76 Aligned_cols=238 Identities=16% Similarity=0.096 Sum_probs=173.6
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHHHhCC--------CCCeEEecCCCCCCCCc-c--------C--------------
Q 012436 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGI--------PDRIKRVYPPCDTSGLQ-V--------L-------------- 261 (464)
Q Consensus 213 ~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~--------~~~i~~i~~~~d~~~~~-~--------~-------------- 261 (464)
.|.+..++.|+.+-++|+-..+..++.+.. ..++.-|-||++...+. + .
T Consensus 343 nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~~~~i~~ITNGVh~~~W~~P~~~~l~~~~~g~~w~~~~~~~~~ 422 (778)
T cd04299 343 NMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPVEEVPIGHVTNGVHVPTWVAPEMRELYDRYLGGDWRERPTDPEL 422 (778)
T ss_pred eHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcccCceeceeCCcchhhhcCHHHHHHHHHhcCcchhhccchHHH
Confidence 456778899999999999885555553321 34578899999876554 0 0
Q ss_pred -------CC-----------------------------------------CCCCCCcEEEEEeccCCCCChHHHHHHHHH
Q 012436 262 -------PL-----------------------------------------ERSTEYPAIISVAQFRPEKAHPLQLEAFSV 293 (464)
Q Consensus 262 -------~~-----------------------------------------~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~ 293 (464)
+. ...++.++++|++|+...|+.++++..+.+
T Consensus 423 ~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~ltigfarRfa~YKR~~Lil~dl~r 502 (778)
T cd04299 423 WEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGFARRFATYKRATLLLRDPER 502 (778)
T ss_pred HhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCccEEeeeecchhhhhHHHHHHHHHH
Confidence 00 011233489999999999999999999888
Q ss_pred HHHHhcCCCCCcEEEEEcCCCCCc--cHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCC--CCCCC
Q 012436 294 ALRKLDADLPRPRLQFVGSCRNKS--DEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI--DEHFG 369 (464)
Q Consensus 294 l~~~~~~~~p~~~l~i~G~~~~~~--~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~--~e~~~ 369 (464)
+.+-..+...++++++.|.+...+ ..++.+.+.+.+++...+++|.|+...+-+--..+++.||+.++||. .|.+|
T Consensus 503 l~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsG 582 (778)
T cd04299 503 LKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASG 582 (778)
T ss_pred HHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCc
Confidence 865321100269999999874322 24566677777775566779999988888888889999999999998 99999
Q ss_pred hHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCC--------------HHHHHHHHHH-HH---cCC-----HH
Q 012436 370 ISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQN--------------AEEYADAIVK-II---SMP-----ET 426 (464)
Q Consensus 370 ~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~--------------~~~la~~i~~-l~---~~~-----~~ 426 (464)
++-+-||..|.+-+++--|-. .|.. + +.+||.+++ .++|.+.|++ ++ -.. |.
T Consensus 583 TSgMKA~~NG~LnlSvlDGww-~E~~-~---g~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~ 657 (778)
T cd04299 583 TSGMKAALNGGLNLSVLDGWW-DEGY-D---GENGWAIGDGDEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPP 657 (778)
T ss_pred cchHHHHHcCCeeeecccCcc-cccc-C---CCCceEeCCCccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence 999999999999998876654 4544 4 688988742 3445555533 22 102 66
Q ss_pred HHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Q 012436 427 ERLEMAAAARRRA-ARFSEQRFYEDFKAAI 455 (464)
Q Consensus 427 ~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~ 455 (464)
...++.+++.+.+ ..|||+.++++|.+-+
T Consensus 658 ~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 658 GWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 7888888888877 8999999999987654
No 108
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.47 E-value=2.7e-13 Score=102.28 Aligned_cols=91 Identities=22% Similarity=0.282 Sum_probs=83.4
Q ss_pred EEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012436 358 VGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEMAAAARR 437 (464)
Q Consensus 358 ~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~ 437 (464)
+++.|+..++++..++|+||||+|+|+++.++. .+++.+ +..++.++|++++.+++..+++ ||+.++++++++++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~-~~~~~~---~~~~~~~~~~~el~~~i~~ll~-~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGL-REIFED---GEHIITYNDPEELAEKIEYLLE-NPEERRRIAKNARE 75 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHH-HHHcCC---CCeEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHH
Confidence 357788889999999999999999999998877 677877 7789999999999999999999 99999999999999
Q ss_pred HH-HccCHHHHHHHHHH
Q 012436 438 RA-ARFSEQRFYEDFKA 453 (464)
Q Consensus 438 ~~-~~~s~~~~~~~~~~ 453 (464)
.+ ++|+|++.++++++
T Consensus 76 ~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 76 RVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHhCCHHHHHHHHHC
Confidence 99 89999999998863
No 109
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2e-10 Score=109.06 Aligned_cols=347 Identities=13% Similarity=0.092 Sum_probs=215.6
Q ss_pred cccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccc
Q 012436 30 RRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRK 109 (464)
Q Consensus 30 ~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (464)
+..+++||+|++..+... .....+..+.+.+.+.. .+|..|.... ...+...+++.. .+ .+
T Consensus 255 ~~~~rlRvGylS~dlr~H-avg~l~~~v~e~hDRdk--fEvfay~~g~-~~~dal~~rI~a----~~-----------~~ 315 (620)
T COG3914 255 RNGKRLRVGYLSSDLRSH-AVGFLLRWVFEYHDRDK--FEVFAYSLGP-PHTDALQERISA----AV-----------EK 315 (620)
T ss_pred ccccceeEEEeccccccc-hHHHHHHHHHHHhchhh--eEEEEEecCC-CCchhHHHHHHH----hh-----------hh
Confidence 556789999999999888 66677777788887776 5555554331 111222222211 11 12
Q ss_pred ccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccc--hhhhccCceEEEEee-CCcchhhhhhccccccc
Q 012436 110 WIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTY--PLARIFGCRVICYTH-YPTISLDMISRVREGSS 186 (464)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~--~~~~~~~~p~v~~~h-~p~~~~~~~~~~~~~~~ 186 (464)
|.+.... ....+...++....||.++..++.... .+...+-.|+.+++- +|... .....
T Consensus 316 ~~~~~~~-----------dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAPiqvswlGy~aT~-------g~p~~ 377 (620)
T COG3914 316 WYPIGRM-----------DDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPIQVSWLGYPATT-------GSPNM 377 (620)
T ss_pred eeccCCc-----------CHHHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCceEEeeccccccc-------CCCcc
Confidence 2211100 122344557888999999766655432 355566778866555 33210 00000
Q ss_pred ccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCc-----cC
Q 012436 187 MYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQ-----VL 261 (464)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~-----~~ 261 (464)
. +--+|..+.+ +...+++.+..-. +--.+-|.|-...- +.
T Consensus 378 D-------------------------------Y~I~D~y~vP-p~ae~yysEkl~R---Lp~cy~p~d~~~~v~p~~sR~ 422 (620)
T COG3914 378 D-------------------------------YFISDPYTVP-PTAEEYYSEKLWR---LPQCYQPVDGFEPVTPPPSRA 422 (620)
T ss_pred e-------------------------------EEeeCceecC-chHHHHHHHHHHh---cccccCCCCCcccCCCCcchh
Confidence 0 0224555555 6666666655321 11112233221111 11
Q ss_pred CCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC-CcEEE
Q 012436 262 PLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEF 340 (464)
Q Consensus 262 ~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~ 340 (464)
....+++. ++|+..-...|-...+++...++.+.. |+-.|++.|.|+ +++....+++++++.|+. +++.|
T Consensus 423 ~lglp~~a--vVf~c~~n~~K~~pev~~~wmqIL~~v----P~Svl~L~~~~~---~~~~~~~l~~la~~~Gv~~eRL~f 493 (620)
T COG3914 423 QLGLPEDA--VVFCCFNNYFKITPEVFALWMQILSAV----PNSVLLLKAGGD---DAEINARLRDLAEREGVDSERLRF 493 (620)
T ss_pred hcCCCCCe--EEEEecCCcccCCHHHHHHHHHHHHhC----CCcEEEEecCCC---cHHHHHHHHHHHHHcCCChhheee
Confidence 11222343 344443477788888888888888877 789999999885 346778999999999984 68999
Q ss_pred ccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc----cceecccCCccceeecCCHHHHHHH
Q 012436 341 YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK----MDIVLEEDGQQTGFLAQNAEEYADA 416 (464)
Q Consensus 341 ~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~----~~~v~~~~~~~~g~~~~~~~~la~~ 416 (464)
.+..+.++..+.|.-||+++-+ +.-+...+..|++.+|+|||+-.-.... ..++... |-.-+++++.++..+.
T Consensus 494 ~p~~~~~~h~a~~~iADlvLDT-yPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~a--gi~e~vA~s~~dYV~~ 570 (620)
T COG3914 494 LPPAPNEDHRARYGIADLVLDT-YPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNA--GIPELVADSRADYVEK 570 (620)
T ss_pred cCCCCCHHHHHhhchhheeeec-ccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhc--CCchhhcCCHHHHHHH
Confidence 9999999999999999999866 4556678899999999999974211110 1233220 2333566777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH-H--ccCHHHHHHHHHHHHHHHHhh
Q 012436 417 IVKIISMPETERLEMAAAARRRA-A--RFSEQRFYEDFKAAIRPILCH 461 (464)
Q Consensus 417 i~~l~~~~~~~~~~~~~~~~~~~-~--~~s~~~~~~~~~~~~~~~~~~ 461 (464)
-..+-. |...+++.+..-++.. . -|+.+.+++++..+|.++.+.
T Consensus 571 av~~g~-dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~~~ 617 (620)
T COG3914 571 AVAFGS-DRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMWSE 617 (620)
T ss_pred HHHhcc-cHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHHHh
Confidence 777777 7777776665554444 2 599999999999999998764
No 110
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.33 E-value=5.3e-12 Score=105.97 Aligned_cols=156 Identities=19% Similarity=0.100 Sum_probs=82.8
Q ss_pred CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccccCcceehhhhchh
Q 012436 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (464)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (464)
||+++++.+++++|.+.||+ |.+++...+....+ ....++.+..++..... . ....+.
T Consensus 1 GG~~~~~~~l~~~L~~~G~~--V~v~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----~-----~~~~~~ 58 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHE--VTVVTPQPDPEDDE-----------EEEDGVRVHRLPLPRRP----W-----PLRLLR 58 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-E--EEEEEE---GGG-S-----------EEETTEEEEEE--S-SS----S-----GGGHCC
T ss_pred CCHHHHHHHHHHHHHHCCCE--EEEEecCCCCcccc-----------cccCCceEEeccCCccc----h-----hhhhHH
Confidence 79999999999999999954 44555432111000 00112244444332111 0 111122
Q ss_pred hhHHHHHHh--hhcCCcEEEecccccccch-hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHH
Q 012436 128 SVYLSWEAL--CKFTPLYYFDTSGYAFTYP-LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQC 203 (464)
Q Consensus 128 ~~~~~~~~l--~~~~~Dvv~~~~~~~~~~~-~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (464)
....+.+.+ ++.+||+||++........ +++ ..++|+|+++|.... ...
T Consensus 59 ~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~---------------------------~~~ 111 (160)
T PF13579_consen 59 FLRRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHGTLF---------------------------RRG 111 (160)
T ss_dssp HHHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS-T-------------------------------
T ss_pred HHHHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEECCCch---------------------------hhc
Confidence 344455556 7889999998775433322 444 789999999993210 000
Q ss_pred HHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCC
Q 012436 204 KIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPP 252 (464)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~ 252 (464)
.....+.+.++++..++.+|.++++|+..++.+.+.+..++++.+||||
T Consensus 112 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~~g~~~~ri~vipnG 160 (160)
T PF13579_consen 112 SRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRRYGVPPDRIHVIPNG 160 (160)
T ss_dssp --HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHHH---GGGEEE----
T ss_pred cchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHHhCCCCCcEEEeCcC
Confidence 2223344466788899999999999999999999954336899999997
No 111
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.33 E-value=1.3e-09 Score=104.17 Aligned_cols=173 Identities=17% Similarity=0.194 Sum_probs=118.1
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC-CcEEEccCCChhHHHH
Q 012436 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLLYRDLVK 351 (464)
Q Consensus 273 ~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~~~~~~~ 351 (464)
+|..--...|--+..++++.++.++. |+.+|++...... ..+.+++.+.+.|+. +++.|.+..+.++...
T Consensus 287 vF~~fn~~~KI~p~~l~~W~~IL~~v----P~S~L~L~~~~~~-----~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~ 357 (468)
T PF13844_consen 287 VFGSFNNLFKISPETLDLWARILKAV----PNSRLWLLRFPAS-----GEARLRRRFAAHGVDPDRIIFSPVAPREEHLR 357 (468)
T ss_dssp EEEE-S-GGG--HHHHHHHHHHHHHS----TTEEEEEEETSTT-----HHHHHHHHHHHTTS-GGGEEEEE---HHHHHH
T ss_pred EEEecCccccCCHHHHHHHHHHHHhC----CCcEEEEeeCCHH-----HHHHHHHHHHHcCCChhhEEEcCCCCHHHHHH
Confidence 33333366788889999999999988 7899988765432 236788888899986 6899999999999999
Q ss_pred HHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccc----eecccCCccceeecCCHHHHHHHHHHHHcCCHHH
Q 012436 352 LLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMD----IVLEEDGQQTGFLAQNAEEYADAIVKIISMPETE 427 (464)
Q Consensus 352 ~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~----~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~ 427 (464)
.++.+|+++-+ ..-+.+.+.+||+.+|+|||+-........ ++... |-..+++.|.+++.+.-.++.+ |++.
T Consensus 358 ~~~~~DI~LDT-~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l--Gl~ElIA~s~~eYv~~Av~La~-D~~~ 433 (468)
T PF13844_consen 358 RYQLADICLDT-FPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL--GLPELIADSEEEYVEIAVRLAT-DPER 433 (468)
T ss_dssp HGGG-SEEE---SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH--T-GGGB-SSHHHHHHHHHHHHH--HHH
T ss_pred HhhhCCEEeeC-CCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc--CCchhcCCCHHHHHHHHHHHhC-CHHH
Confidence 99999999987 445568899999999999998763322111 11110 2233566799999999999999 9999
Q ss_pred HHHHHHHHHHHH---HccCHHHHHHHHHHHHHHH
Q 012436 428 RLEMAAAARRRA---ARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 428 ~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~ 458 (464)
+++++++.++.. .-|+...+++++++.|+++
T Consensus 434 l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 434 LRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp HHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 999999888765 3499999999999999876
No 112
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.33 E-value=1.5e-10 Score=109.23 Aligned_cols=307 Identities=15% Similarity=0.100 Sum_probs=157.5
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||+|..... |-|.-.....++++| +|| +|.+++... ...+. ...+...-..+.....-...-.....
T Consensus 1 MkIl~~v~~~--G~GH~~R~~~la~~L--rg~--~v~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGH--GLGHASRCLALARAL--RGH--EVTFITSGP---APEFL---KPRFPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCC--CcCHHHHHHHHHHHH--ccC--ceEEEEcCC---cHHHh---ccccCEEEccCceEeccCCccchHHH
Confidence 8999987664 557888888999999 475 444554432 11222 11121110011111110000000000
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEeeCCcchhhhhhcccccccccCCCccc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASI 194 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~ 194 (464)
......+............+.+++++||+|++-.. +.....++..++|.+...|...... +.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~------------~~----- 130 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLREFRPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLH------------PN----- 130 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHccc------------cc-----
Confidence 00000000111223344556688899999984322 2222367789999998888221000 00
Q ss_pred ccchhhhHHHHHHHHHHHHHHHH-HhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEE
Q 012436 195 AQSNWLSQCKIVYYTFFSWMYGL-VGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAII 273 (464)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~ 273 (464)
.+.. ..........++... ....++..+..+-... . ....+..++++......... ...+.+.+++
T Consensus 131 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~----~~~~~~~~~~p~~~~~~~~~---~~~~~~~iLv 197 (318)
T PF13528_consen 131 ---FWLP-WDQDFGRLIERYIDRYHFPPADRRLALSFYPP--L----PPFFRVPFVGPIIRPEIREL---PPEDEPKILV 197 (318)
T ss_pred ---CCcc-hhhhHHHHHHHhhhhccCCcccceecCCcccc--c----cccccccccCchhccccccc---CCCCCCEEEE
Confidence 0000 000111111212221 1345555555443311 0 00222333444443332221 1224557889
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHH
Q 012436 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLL 353 (464)
Q Consensus 274 ~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l 353 (464)
++|..... .++++++.+ |+..++++|..... .. .+||++.++. ..++.++|
T Consensus 198 ~~gg~~~~----~~~~~l~~~--------~~~~~~v~g~~~~~------~~----------~~ni~~~~~~-~~~~~~~m 248 (318)
T PF13528_consen 198 YFGGGGPG----DLIEALKAL--------PDYQFIVFGPNAAD------PR----------PGNIHVRPFS-TPDFAELM 248 (318)
T ss_pred EeCCCcHH----HHHHHHHhC--------CCCeEEEEcCCccc------cc----------CCCEEEeecC-hHHHHHHH
Confidence 99976554 556666654 57889999765311 00 4689988863 37899999
Q ss_pred hcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccce-----ecccCCccceeecC----CHHHHHHHHHHH
Q 012436 354 GGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDI-----VLEEDGQQTGFLAQ----NAEEYADAIVKI 420 (464)
Q Consensus 354 ~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~-----v~~~~~~~~g~~~~----~~~~la~~i~~l 420 (464)
+.||++|.-. .-.++.|++++|+|+|+-...+..+.. +.+ .+.|...+ +++.+++.|+++
T Consensus 249 ~~ad~vIs~~----G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~---~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 249 AAADLVISKG----GYTTISEALALGKPALVIPRPGQDEQEYNARKLEE---LGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HhCCEEEECC----CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH---CCCeEEcccccCCHHHHHHHHhcC
Confidence 9999999652 233599999999999998876542332 222 34444432 778888887653
No 113
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.19 E-value=6.4e-10 Score=93.08 Aligned_cols=175 Identities=15% Similarity=0.067 Sum_probs=108.7
Q ss_pred ceEEEecCCC-CC-CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccc
Q 012436 35 TSVAFFHPNT-ND-GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIE 112 (464)
Q Consensus 35 mkI~~~~~~~-~~-~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (464)
.||+++-.-. |. .||-|+++.+|+..|++.| +++.+++........ .....|+ +.+.++....
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g--~~v~Vyc~~~~~~~~-----~~~y~gv------~l~~i~~~~~-- 66 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKG--IDVTVYCRSDYYPYK-----EFEYNGV------RLVYIPAPKN-- 66 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCC--ceEEEEEccCCCCCC-----CcccCCe------EEEEeCCCCC--
Confidence 5788886543 32 3999999999999999999 566666654321111 0111122 4444433221
Q ss_pred cccCcceehhhhchhhhHHHHHHhhh--cCCcEEEecccc--cccchhhh---ccCceEEEEeeCCcchhhhhhcccccc
Q 012436 113 ESTYPRFTMIGQSFGSVYLSWEALCK--FTPLYYFDTSGY--AFTYPLAR---IFGCRVICYTHYPTISLDMISRVREGS 185 (464)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~Dvv~~~~~~--~~~~~~~~---~~~~p~v~~~h~p~~~~~~~~~~~~~~ 185 (464)
.....+...+.++..+.+..+. .+.|+++..... ++..++.+ ..|.|+++..|..+.
T Consensus 67 ----g~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGlEW------------ 130 (185)
T PF09314_consen 67 ----GSAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGLEW------------ 130 (185)
T ss_pred ----CchHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcchh------------
Confidence 1111222223333344333333 367887744433 33445444 346689998774431
Q ss_pred cccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCC
Q 012436 186 SMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCD 254 (464)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d 254 (464)
...++....++++.+.|+.+.+.+|.+|+.|+..++++++.|+ ..+..+|++|.|
T Consensus 131 -------------kR~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~y~~~~y~-~~~s~~IaYGad 185 (185)
T PF09314_consen 131 -------------KRAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQDYIKERYG-RKKSTFIAYGAD 185 (185)
T ss_pred -------------hhhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHHcC-CCCcEEecCCCC
Confidence 1234445667778888999999999999999999999999996 478888999976
No 114
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.19 E-value=1.3e-08 Score=98.92 Aligned_cols=109 Identities=16% Similarity=0.058 Sum_probs=73.0
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCcc---ceecccCCccceeecC---
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--- 408 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--- 408 (464)
++++.+.+++|+. +++..||++|..+ | ..+++||+++|+|+|+....+.-. ..+.. .+.|...+
T Consensus 274 ~~~v~~~~~~p~~---~ll~~~~~~I~hg---G-~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~---~g~g~~l~~~~ 343 (392)
T TIGR01426 274 PPNVEVRQWVPQL---EILKKADAFITHG---G-MNSTMEALFNGVPMVAVPQGADQPMTARRIAE---LGLGRHLPPEE 343 (392)
T ss_pred CCCeEEeCCCCHH---HHHhhCCEEEECC---C-chHHHHHHHhCCCEEecCCcccHHHHHHHHHH---CCCEEEecccc
Confidence 5789999999764 5789999998652 2 348999999999999976553311 11223 34554442
Q ss_pred -CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 012436 409 -NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAA 454 (464)
Q Consensus 409 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 454 (464)
++++++++|.++++ |++.++++.+-+.+....-..+..++.+.++
T Consensus 344 ~~~~~l~~ai~~~l~-~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 344 VTAEKLREAVLAVLS-DPRYAERLRKMRAEIREAGGARRAADEIEGF 389 (392)
T ss_pred CCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 78999999999999 8875555543333333445555555555444
No 115
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.18 E-value=2.4e-08 Score=95.32 Aligned_cols=268 Identities=13% Similarity=0.075 Sum_probs=150.1
Q ss_pred hhhHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHH
Q 012436 127 GSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQC 203 (464)
Q Consensus 127 ~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (464)
.....+.+.+.+.+||+|+.+......++ .+...++|++. +|....+.+ ..
T Consensus 80 ~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~H-veaG~rs~~-------------------------~~ 133 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAH-IHGGEVTEG-------------------------AI 133 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEE-EECCccCCC-------------------------Cc
Confidence 33556667788999998886553322222 55589999973 342111000 00
Q ss_pred HHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCC-CCCCCcc-CC-------CCCCCC-CcEEE
Q 012436 204 KIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQV-LP-------LERSTE-YPAII 273 (464)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~-d~~~~~~-~~-------~~~~~~-~~~i~ 273 (464)
.-.. .+.+-+.++..++.++..++.+.+.+-.+.++.++.|+. |.-.... .. ...+.+ +..++
T Consensus 134 eE~~-------r~~i~~la~l~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlv 206 (365)
T TIGR03568 134 DESI-------RHAITKLSHLHFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALV 206 (365)
T ss_pred hHHH-------HHHHHHHHhhccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEE
Confidence 0000 122336667888899999998887643366787776643 3211000 00 001112 33333
Q ss_pred EEeccC--CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHH
Q 012436 274 SVAQFR--PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVK 351 (464)
Q Consensus 274 ~~G~~~--~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~ 351 (464)
.+-+-. .....+.+.+.++.+.... .++.++.-..++. .....+.+++...+ .+++.+.+.++..++..
T Consensus 207 t~Hp~~~~~~~~~~~l~~li~~L~~~~----~~~~vi~P~~~p~--~~~i~~~i~~~~~~---~~~v~l~~~l~~~~~l~ 277 (365)
T TIGR03568 207 TFHPVTLEKESAEEQIKELLKALDELN----KNYIFTYPNADAG--SRIINEAIEEYVNE---HPNFRLFKSLGQERYLS 277 (365)
T ss_pred EeCCCcccccCchHHHHHHHHHHHHhc----cCCEEEEeCCCCC--chHHHHHHHHHhcC---CCCEEEECCCChHHHHH
Confidence 333322 3333344444444443332 1443322122221 21223344444221 35899999999999999
Q ss_pred HHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHcCCHHHHHH
Q 012436 352 LLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIISMPETERLE 430 (464)
Q Consensus 352 ~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~~~~~~~~~ 430 (464)
+++.|+++|..| +..+.||.++|+|+|.-. . ..+.+.. +.+++.++ |++++.+++.++. +++.++.
T Consensus 278 Ll~~a~~vitdS-----Sggi~EA~~lg~Pvv~l~--~-R~e~~~~---g~nvl~vg~~~~~I~~a~~~~~--~~~~~~~ 344 (365)
T TIGR03568 278 LLKNADAVIGNS-----SSGIIEAPSFGVPTINIG--T-RQKGRLR---ADSVIDVDPDKEEIVKAIEKLL--DPAFKKS 344 (365)
T ss_pred HHHhCCEEEEcC-----hhHHHhhhhcCCCEEeec--C-Cchhhhh---cCeEEEeCCCHHHHHHHHHHHh--ChHHHHH
Confidence 999999999543 123489999999999654 2 3666666 67777677 9999999999954 4433222
Q ss_pred HHHHHHHHH-HccCHHHHHHHHHHH
Q 012436 431 MAAAARRRA-ARFSEQRFYEDFKAA 454 (464)
Q Consensus 431 ~~~~~~~~~-~~~s~~~~~~~~~~~ 454 (464)
+ ... ..|...+.++++.++
T Consensus 345 ~-----~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 345 L-----KNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred H-----hhCCCCCCCChHHHHHHHh
Confidence 2 112 446666666666654
No 116
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=3.4e-08 Score=90.83 Aligned_cols=352 Identities=15% Similarity=0.083 Sum_probs=209.6
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIE 112 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (464)
.+|||+++...-+.. .-+.-+++++.+.+.-...++.|+.+. ..++.+...+.+++.-++ +.+...
T Consensus 2 ~~~Kv~~I~GTRPE~----iKmapli~~~~~~~~~~~~vi~TGQH~--d~em~~~~le~~~i~~pd----y~L~i~---- 67 (383)
T COG0381 2 KMLKVLTIFGTRPEA----IKMAPLVKALEKDPDFELIVIHTGQHR--DYEMLDQVLELFGIRKPD----YDLNIM---- 67 (383)
T ss_pred CceEEEEEEecCHHH----HHHhHHHHHHHhCCCCceEEEEecccc--cHHHHHHHHHHhCCCCCC----cchhcc----
Confidence 568899886544322 234567788888762223344455431 125566666666664211 111110
Q ss_pred cccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhcccccccccC
Q 012436 113 ESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (464)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~ 189 (464)
.+........-..+..+.+.+.+.+||+|..+......+. .+...++|+..--- ...+.+. |
T Consensus 68 ---~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEA-GlRt~~~----------~- 132 (383)
T COG0381 68 ---KPGQTLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEA-GLRTGDL----------Y- 132 (383)
T ss_pred ---ccCCCHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEec-ccccCCC----------C-
Confidence 0011111111123445566688999997764444333322 44478888743211 1100000 0
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCC----------CCc
Q 012436 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTS----------GLQ 259 (464)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~----------~~~ 259 (464)
|.... ..+.+-.-+|.-+++++..++.+.+.+-.+++++++.|.+-.. ...
T Consensus 133 ---------~PEE~----------NR~l~~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~ 193 (383)
T COG0381 133 ---------FPEEI----------NRRLTSHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSK 193 (383)
T ss_pred ---------CcHHH----------HHHHHHHhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchh
Confidence 00000 0123336678889999999999998854466799988864110 000
Q ss_pred cC-C-CCCCCCCcEEEEEeccCCC-CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHH-HhcCCC
Q 012436 260 VL-P-LERSTEYPAIISVAQFRPE-KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKS-IELKVD 335 (464)
Q Consensus 260 ~~-~-~~~~~~~~~i~~~G~~~~~-K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~-~~~~l~ 335 (464)
.. . .....++..++.+-|.+.. +++..+++++.++..+. |++.++.--... ..+++.. +.++-.
T Consensus 194 ~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~----~~~~viyp~H~~--------~~v~e~~~~~L~~~ 261 (383)
T COG0381 194 ILAKGLDDKDKKYILVTAHRRENVGEPLEEICEALREIAEEY----PDVIVIYPVHPR--------PRVRELVLKRLKNV 261 (383)
T ss_pred hHHhhhccccCcEEEEEcchhhcccccHHHHHHHHHHHHHhC----CCceEEEeCCCC--------hhhhHHHHHHhCCC
Confidence 00 0 1222233455555555443 89999999999998887 466665544332 2233333 455556
Q ss_pred CcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHH
Q 012436 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYA 414 (464)
Q Consensus 336 ~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la 414 (464)
++|+++.++...+...+++.|-+.+--| |.-.=||-..|+||++-+...-.+|.+.. ++-.+++ +.+.+.
T Consensus 262 ~~v~li~pl~~~~f~~L~~~a~~iltDS-----GgiqEEAp~lg~Pvl~lR~~TERPE~v~a----gt~~lvg~~~~~i~ 332 (383)
T COG0381 262 ERVKLIDPLGYLDFHNLMKNAFLILTDS-----GGIQEEAPSLGKPVLVLRDTTERPEGVEA----GTNILVGTDEENIL 332 (383)
T ss_pred CcEEEeCCcchHHHHHHHHhceEEEecC-----CchhhhHHhcCCcEEeeccCCCCccceec----CceEEeCccHHHHH
Confidence 6899999999999999999997766443 44567999999999998877666776654 5556666 999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 012436 415 DAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 415 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 458 (464)
+++.++++ +++.+++|++.. ..|.-.+..+++.+++...
T Consensus 333 ~~~~~ll~-~~~~~~~m~~~~----npYgdg~as~rIv~~l~~~ 371 (383)
T COG0381 333 DAATELLE-DEEFYERMSNAK----NPYGDGNASERIVEILLNY 371 (383)
T ss_pred HHHHHHhh-ChHHHHHHhccc----CCCcCcchHHHHHHHHHHH
Confidence 99999999 998888776533 4455555666666665543
No 117
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.14 E-value=4e-08 Score=95.85 Aligned_cols=88 Identities=22% Similarity=0.180 Sum_probs=61.6
Q ss_pred CCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCccceeecC--
Q 012436 334 VDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQTGFLAQ-- 408 (464)
Q Consensus 334 l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~~g~~~~-- 408 (464)
+++||.+.+++|.. ++|..||++|.- +...++.||+++|+|+|+....+.- .+.+.. .+.|...+
T Consensus 286 ~~~~v~~~~~~p~~---~ll~~~d~~I~h----gG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~---~G~g~~l~~~ 355 (401)
T cd03784 286 LPDNVRVVDFVPHD---WLLPRCAAVVHH----GGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAE---LGAGPALDPR 355 (401)
T ss_pred CCCceEEeCCCCHH---HHhhhhheeeec----CCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHH---CCCCCCCCcc
Confidence 36799999998654 558889999943 3357999999999999998765420 112233 35565543
Q ss_pred --CHHHHHHHHHHHHcCCHHHHHHHHH
Q 012436 409 --NAEEYADAIVKIISMPETERLEMAA 433 (464)
Q Consensus 409 --~~~~la~~i~~l~~~~~~~~~~~~~ 433 (464)
+++++.+++.++++ ++ .+++..+
T Consensus 356 ~~~~~~l~~al~~~l~-~~-~~~~~~~ 380 (401)
T cd03784 356 ELTAERLAAALRRLLD-PP-SRRRAAA 380 (401)
T ss_pred cCCHHHHHHHHHHHhC-HH-HHHHHHH
Confidence 78999999999997 54 3333333
No 118
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.13 E-value=8.9e-09 Score=94.43 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=73.0
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEE-EEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRL-QFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l-~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
+.+++++|..++.+....+++++..+.. ++++ +++|.+.. ..+++++.++.. +++++.+++ +
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~-------~~~i~vv~G~~~~-----~~~~l~~~~~~~---~~i~~~~~~--~ 233 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQI-------NISITLVTGSSNP-----NLDELKKFAKEY---PNIILFIDV--E 233 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhcccc-------CceEEEEECCCCc-----CHHHHHHHHHhC---CCEEEEeCH--H
Confidence 4578888988887767788888876532 3333 36665532 135677766653 489999999 8
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCC
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
++.++|++||++|.+ .|.+++|++++|+|+|+....
T Consensus 234 ~m~~lm~~aDl~Is~-----~G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 234 NMAELMNEADLAIGA-----AGSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred HHHHHHHHCCEEEEC-----CchHHHHHHHcCCCEEEEEec
Confidence 999999999999974 458999999999999987654
No 119
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.09 E-value=3.6e-08 Score=89.82 Aligned_cols=217 Identities=14% Similarity=0.068 Sum_probs=150.4
Q ss_pred cCCEEEEcCHHH-HHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhc
Q 012436 221 CADLAMVNSSWT-QSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLD 299 (464)
Q Consensus 221 ~ad~vi~~S~~~-~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~ 299 (464)
..|.|++.++.. ++.+.+..+ ..+...++.++|.+.+.+.+...... -.+.++|...+. ..+.+-+.+..=.....
T Consensus 138 ~fd~v~~~g~~l~~~~yyq~~~-~~~~~~~~~a~d~~~~~~i~~da~~~-~dL~~ign~~pD-r~e~~ke~~~~ps~kl~ 214 (373)
T COG4641 138 IFDNVLSFGGGLVANKYYQEGG-ARNCYYLPWAVDDSLFHPIPPDASYD-VDLNLIGNPYPD-RVEEIKEFFVEPSFKLM 214 (373)
T ss_pred hhhhhhhccchHHHHHHHHhhc-ccceeccCccCCchhcccCCccccce-eeeEEecCCCcc-HHHHHHHHhhccchhhh
Confidence 345566667766 555554433 56778899999999988766433322 478899976555 12222222221111111
Q ss_pred CCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh-hHHHHHHhcCcEEEEcCC---CC-C--CChHH
Q 012436 300 ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY-RDLVKLLGGAVVGIHSMI---DE-H--FGISV 372 (464)
Q Consensus 300 ~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~-~~~~~~l~~ad~~v~ps~---~e-~--~~~~~ 372 (464)
-+-++.+.|.... ..+... -..+++...|+.+. +.+...++..|+.+.-++ .+ + +.+-+
T Consensus 215 ---v~rr~~~~g~~y~-------~~~~~~----~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~Rv 280 (373)
T COG4641 215 ---VDRRFYVLGPRYP-------DDIWGR----TWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRV 280 (373)
T ss_pred ---ccceeeecCCccc-------hhhhcc----cccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhH
Confidence 1345666665411 111111 11357888898866 899999999999876543 22 2 26779
Q ss_pred HHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHH
Q 012436 373 VEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDF 451 (464)
Q Consensus 373 ~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~ 451 (464)
.|+++||.|.|++...+. +..+.+ |+.-+++.|..++.+.+..++. .+++++++++.+.+.+ ..|+.++-...+
T Consensus 281 Feiagc~~~liT~~~~~~-e~~f~p---gk~~iv~~d~kdl~~~~~yll~-h~~erkeiae~~ye~V~~~ht~~~r~~~~ 355 (373)
T COG4641 281 FEIAGCGGFLITDYWKDL-EKFFKP---GKDIIVYQDSKDLKEKLKYLLN-HPDERKEIAECAYERVLARHTYEERIFKL 355 (373)
T ss_pred HHHhhcCCccccccHHHH-HHhcCC---chheEEecCHHHHHHHHHHHhc-CcchHHHHHHhhHHHHHHhccHHHHHHHH
Confidence 999999999999888777 677777 7777788899999999999999 9999999999999999 889999999888
Q ss_pred HHHHHHHH
Q 012436 452 KAAIRPIL 459 (464)
Q Consensus 452 ~~~~~~~~ 459 (464)
++.+..+.
T Consensus 356 ~~~i~sI~ 363 (373)
T COG4641 356 LNEIASIN 363 (373)
T ss_pred HHHHHHHH
Confidence 88877643
No 120
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.08 E-value=2.2e-08 Score=99.34 Aligned_cols=137 Identities=15% Similarity=0.028 Sum_probs=85.9
Q ss_pred CcEEEEEeccCCC-C----ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 012436 269 YPAIISVAQFRPE-K----AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (464)
Q Consensus 269 ~~~i~~~G~~~~~-K----~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 343 (464)
+.+++..|+.... + -...+++|++++ +.++++...+... . .++++||.+.++
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l---------~~~viw~~~~~~~------~--------~~~p~Nv~i~~w 353 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL---------PYNVLWKYDGEVE------A--------INLPANVLTQKW 353 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhC---------CCeEEEEECCCcC------c--------ccCCCceEEecC
Confidence 4677777876432 2 234445555444 4566555443211 1 134789999999
Q ss_pred CChhHHHHHH--hcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCcc---ceecccCCccceeecC----CHHHHH
Q 012436 344 LLYRDLVKLL--GGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ----NAEEYA 414 (464)
Q Consensus 344 ~~~~~~~~~l--~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~----~~~~la 414 (464)
+|+.++ + ..++++|.- |...++.||+.+|+|+|+-...+--. ..+.. .+.|...+ +.+++.
T Consensus 354 ~Pq~~l---L~hp~v~~fItH----GG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~---~G~G~~l~~~~~t~~~l~ 423 (507)
T PHA03392 354 FPQRAV---LKHKNVKAFVTQ----GGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVE---LGIGRALDTVTVSAAQLV 423 (507)
T ss_pred CCHHHH---hcCCCCCEEEec----CCcccHHHHHHcCCCEEECCCCccHHHHHHHHHH---cCcEEEeccCCcCHHHHH
Confidence 988654 6 558888833 44568999999999999977553211 11223 35565543 889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Q 012436 415 DAIVKIISMPETERLEMAAAARRRA 439 (464)
Q Consensus 415 ~~i~~l~~~~~~~~~~~~~~~~~~~ 439 (464)
++|.++++ |+..++...+-++...
T Consensus 424 ~ai~~vl~-~~~y~~~a~~ls~~~~ 447 (507)
T PHA03392 424 LAIVDVIE-NPKYRKNLKELRHLIR 447 (507)
T ss_pred HHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 99999999 8765555444444433
No 121
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.06 E-value=5.6e-08 Score=90.16 Aligned_cols=290 Identities=13% Similarity=0.133 Sum_probs=161.8
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||++-.... ....+...+++.|.+.| ++|.+.+.+. .......+.+|+. ...+.... .
T Consensus 1 MkIwiDi~~p----~hvhfFk~~I~eL~~~G--heV~it~R~~-----~~~~~LL~~yg~~------y~~iG~~g---~- 59 (335)
T PF04007_consen 1 MKIWIDITHP----AHVHFFKNIIRELEKRG--HEVLITARDK-----DETEELLDLYGID------YIVIGKHG---D- 59 (335)
T ss_pred CeEEEECCCc----hHHHHHHHHHHHHHhCC--CEEEEEEecc-----chHHHHHHHcCCC------eEEEcCCC---C-
Confidence 7888865554 36688899999999999 6767767654 2223344455552 22222211 1
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEeeCCcchhhhhhcccccccccCCCccc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASI 194 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~ 194 (464)
..............++.+.+++++||++++..+... ..++...|+|.|....++...
T Consensus 60 --~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~~s~~a-~~va~~lgiP~I~f~D~e~a~-------------------- 116 (335)
T PF04007_consen 60 --SLYGKLLESIERQYKLLKLIKKFKPDVAISFGSPEA-ARVAFGLGIPSIVFNDTEHAI-------------------- 116 (335)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHhhCCCEEEecCcHHH-HHHHHHhCCCeEEEecCchhh--------------------
Confidence 111222223344556667788899999996544222 126778999999988854310
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCC----CCccCC-----CCC
Q 012436 195 AQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTS----GLQVLP-----LER 265 (464)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~----~~~~~~-----~~~ 265 (464)
...+..+..||.+++++-.-...+.+. |..+++ .-++|++.- .|.+.+ ...
T Consensus 117 ------------------~~~~Lt~Pla~~i~~P~~~~~~~~~~~-G~~~~i-~~y~G~~E~ayl~~F~Pd~~vl~~lg~ 176 (335)
T PF04007_consen 117 ------------------AQNRLTLPLADVIITPEAIPKEFLKRF-GAKNQI-RTYNGYKELAYLHPFKPDPEVLKELGL 176 (335)
T ss_pred ------------------ccceeehhcCCeeECCcccCHHHHHhc-CCcCCE-EEECCeeeEEeecCCCCChhHHHHcCC
Confidence 011444578999998877666666555 433233 226776542 222211 111
Q ss_pred CCCCcEEEEEeccCCC-----CCh-HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEE
Q 012436 266 STEYPAIISVAQFRPE-----KAH-PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE 339 (464)
Q Consensus 266 ~~~~~~i~~~G~~~~~-----K~~-~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~ 339 (464)
++..+|+ + |..+. +|- ..+-+.++.+.+.. +. ++++....+ .+.+.+++ ++.
T Consensus 177 -~~~~yIv-v-R~~~~~A~y~~~~~~i~~~ii~~L~~~~-----~~-vV~ipr~~~---------~~~~~~~~----~~~ 234 (335)
T PF04007_consen 177 -DDEPYIV-V-RPEAWKASYDNGKKSILPEIIEELEKYG-----RN-VVIIPRYED---------QRELFEKY----GVI 234 (335)
T ss_pred -CCCCEEE-E-EeccccCeeecCccchHHHHHHHHHhhC-----ce-EEEecCCcc---------hhhHHhcc----Ccc
Confidence 2233333 2 33332 222 33445566665553 33 556654321 11222222 233
Q ss_pred EccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC--ccceecccCCccceeec--CCHHHHHH
Q 012436 340 FYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP--KMDIVLEEDGQQTGFLA--QNAEEYAD 415 (464)
Q Consensus 340 ~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~--~~~~v~~~~~~~~g~~~--~~~~~la~ 415 (464)
+.... -+..+++.-||++|. +.|....||..+|+|.|.+-.+.. ..+... +.|.+. .|++++.+
T Consensus 235 i~~~~--vd~~~Ll~~a~l~Ig-----~ggTMa~EAA~LGtPaIs~~~g~~~~vd~~L~-----~~Gll~~~~~~~ei~~ 302 (335)
T PF04007_consen 235 IPPEP--VDGLDLLYYADLVIG-----GGGTMAREAALLGTPAISCFPGKLLAVDKYLI-----EKGLLYHSTDPDEIVE 302 (335)
T ss_pred ccCCC--CCHHHHHHhcCEEEe-----CCcHHHHHHHHhCCCEEEecCCcchhHHHHHH-----HCCCeEecCCHHHHHH
Confidence 33332 356689999999993 446778999999999999754321 123332 345554 49999888
Q ss_pred HHHHHHc
Q 012436 416 AIVKIIS 422 (464)
Q Consensus 416 ~i~~l~~ 422 (464)
.+.+...
T Consensus 303 ~v~~~~~ 309 (335)
T PF04007_consen 303 YVRKNLG 309 (335)
T ss_pred HHHHhhh
Confidence 6665544
No 122
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=2.6e-08 Score=91.32 Aligned_cols=325 Identities=14% Similarity=0.089 Sum_probs=180.3
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
+|||+++..-. .+......++++|.++-.+++++-+.+.. +... |.+..- ....+....+.
T Consensus 1 ~~ki~i~AGE~----SGDllGa~LikaLk~~~~~~efvGvgG~~------m~ae-----G~~sl~--~~~elsvmGf~-- 61 (381)
T COG0763 1 MLKIALSAGEA----SGDLLGAGLIKALKARYPDVEFVGVGGEK------MEAE-----GLESLF--DMEELSVMGFV-- 61 (381)
T ss_pred CceEEEEeccc----chhhHHHHHHHHHHhhCCCeEEEEeccHH------HHhc-----cCcccc--CHHHHHHhhHH--
Confidence 36888875544 34556678899999987677877666532 1100 110000 00000000000
Q ss_pred ccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhh---c--cCceEEEEeeCCcchhhhhhccccccccc
Q 012436 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLAR---I--FGCRVICYTHYPTISLDMISRVREGSSMY 188 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~---~--~~~p~v~~~h~p~~~~~~~~~~~~~~~~~ 188 (464)
.-+..+...+.......+.+...+||+++.-....+.+.+++ . +++|+|.|+- ..+|.
T Consensus 62 ---EVL~~lp~llk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~---------PsVWA----- 124 (381)
T COG0763 62 ---EVLGRLPRLLKIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVS---------PSVWA----- 124 (381)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEEC---------cceee-----
Confidence 000011111222334444566789999987677677766544 2 3477777665 22330
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCC-CccC------
Q 012436 189 NNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSG-LQVL------ 261 (464)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~-~~~~------ 261 (464)
|. .+ | ...+.+.+|.+++.-++..+.+.+... +.++|.++.-.+. +.+.
T Consensus 125 ----------Wr--~~----R-----a~~i~~~~D~lLailPFE~~~y~k~g~---~~~yVGHpl~d~i~~~~~r~~ar~ 180 (381)
T COG0763 125 ----------WR--PK----R-----AVKIAKYVDHLLAILPFEPAFYDKFGL---PCTYVGHPLADEIPLLPDREAARE 180 (381)
T ss_pred ----------ec--hh----h-----HHHHHHHhhHeeeecCCCHHHHHhcCC---CeEEeCChhhhhccccccHHHHHH
Confidence 00 00 0 133448899999999999999988742 3667777753322 2211
Q ss_pred CCCCC-CCCcEEEEEeccC--CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcE
Q 012436 262 PLERS-TEYPAIISVAQFR--PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV 338 (464)
Q Consensus 262 ~~~~~-~~~~~i~~~G~~~--~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v 338 (464)
....+ +.+...+..|+-. -.+-...+++++..++.+. |+.++++--... .+.....+..+......++
T Consensus 181 ~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~----~~~~~vlp~~~~-----~~~~~~~~~~~~~~~~~~~ 251 (381)
T COG0763 181 KLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARY----PDLKFVLPLVNA-----KYRRIIEEALKWEVAGLSL 251 (381)
T ss_pred HhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhC----CCceEEEecCcH-----HHHHHHHHHhhccccCceE
Confidence 11112 3345556667542 2366788888888888777 799998877543 2222222222221111122
Q ss_pred EEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC-CCCCccc-eecccC-----C--c-cce-eec
Q 012436 339 EFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN-SAGPKMD-IVLEED-----G--Q-QTG-FLA 407 (464)
Q Consensus 339 ~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~-~~~~~~~-~v~~~~-----~--~-~~g-~~~ 407 (464)
. +...+-.+.+..||+.+..| |++.+|++.+|+|.|++- .... .- +..... + + -.| .++
T Consensus 252 ~----~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~Yk~~~i-t~~iak~lvk~~yisLpNIi~~~~iv 321 (381)
T COG0763 252 I----LIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVVAYKVKPI-TYFIAKRLVKLPYVSLPNILAGREIV 321 (381)
T ss_pred E----ecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEEEeccHH-HHHHHHHhccCCcccchHHhcCCccc
Confidence 2 23356778899999987665 889999999999999863 2221 11 110000 0 0 001 111
Q ss_pred ------C-CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012436 408 ------Q-NAEEYADAIVKIISMPETERLEMAAAARRR 438 (464)
Q Consensus 408 ------~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 438 (464)
+ .++.+++++..++. |...++++.+...+.
T Consensus 322 PEliq~~~~pe~la~~l~~ll~-~~~~~~~~~~~~~~l 358 (381)
T COG0763 322 PELIQEDCTPENLARALEELLL-NGDRREALKEKFREL 358 (381)
T ss_pred hHHHhhhcCHHHHHHHHHHHhc-ChHhHHHHHHHHHHH
Confidence 1 69999999999999 886666666655443
No 123
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.04 E-value=2.7e-08 Score=93.55 Aligned_cols=311 Identities=14% Similarity=0.101 Sum_probs=175.6
Q ss_pred cchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccccCcceehhhhchhhh
Q 012436 50 GERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGSV 129 (464)
Q Consensus 50 ~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (464)
+..+...|+++|.+...++++.-+.+.. +.. -|.+..-+. -.+..-.+. .-+..+.......
T Consensus 10 GD~~ga~Li~~Lk~~~p~~~~~GvGG~~------M~~-----~G~~~l~d~--~~lsvmG~~-----Evl~~l~~~~~~~ 71 (373)
T PF02684_consen 10 GDLHGARLIRALKARDPDIEFYGVGGPR------MQA-----AGVESLFDM--EELSVMGFV-----EVLKKLPKLKRLF 71 (373)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEechH------HHh-----CCCceecch--HHhhhccHH-----HHHHHHHHHHHHH
Confidence 5667789999999999877777666532 111 122111000 000000000 0011111222334
Q ss_pred HHHHHHhhhcCCcEEEecccccccchhhh---ccCce--EEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHH
Q 012436 130 YLSWEALCKFTPLYYFDTSGYAFTYPLAR---IFGCR--VICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCK 204 (464)
Q Consensus 130 ~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~---~~~~p--~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (464)
..+.+.+.+.+||+++......+.+.+++ ..++| ++.|+- |. +|. |.. .
T Consensus 72 ~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~-Pq--------vWA---------------Wr~--~ 125 (373)
T PF02684_consen 72 RKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYIS-PQ--------VWA---------------WRP--G 125 (373)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEEC-Cc--------eee---------------eCc--c
Confidence 44555677889999886666666666555 55666 666554 32 220 100 0
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCC-------CCCCCCCcEEEEEec
Q 012436 205 IVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP-------LERSTEYPAIISVAQ 277 (464)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~-------~~~~~~~~~i~~~G~ 277 (464)
| -+.+-+.+|.++|.=++..+.+++.+ -+++++.||+-.......+ .-..+++...+..|+
T Consensus 126 ----R-----~~~i~~~~D~ll~ifPFE~~~y~~~g---~~~~~VGHPl~d~~~~~~~~~~~~~~~l~~~~~iIaLLPGS 193 (373)
T PF02684_consen 126 ----R-----AKKIKKYVDHLLVIFPFEPEFYKKHG---VPVTYVGHPLLDEVKPEPDRAEAREKLLDPDKPIIALLPGS 193 (373)
T ss_pred ----H-----HHHHHHHHhheeECCcccHHHHhccC---CCeEEECCcchhhhccCCCHHHHHHhcCCCCCcEEEEeCCC
Confidence 0 13334778999999999999998873 4677888875222111100 111233345566665
Q ss_pred cC--CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc
Q 012436 278 FR--PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (464)
Q Consensus 278 ~~--~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ 355 (464)
-. -.+.+..++++++.+.++. |++++++..... ...+.+++.....+....+... ..+-.+.|+.
T Consensus 194 R~~EI~rllP~~l~aa~~l~~~~----p~l~fvvp~a~~-----~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~m~~ 260 (373)
T PF02684_consen 194 RKSEIKRLLPIFLEAAKLLKKQR----PDLQFVVPVAPE-----VHEELIEEILAEYPPDVSIVII----EGESYDAMAA 260 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhC----CCeEEEEecCCH-----HHHHHHHHHHHhhCCCCeEEEc----CCchHHHHHh
Confidence 32 2356688899999999887 799999887543 1223344444444332222222 2467788999
Q ss_pred CcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccce-----ecc-cCC------ccce---eec-C-CHHHHHHHHH
Q 012436 356 AVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDI-----VLE-EDG------QQTG---FLA-Q-NAEEYADAIV 418 (464)
Q Consensus 356 ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~-----v~~-~~~------~~~g---~~~-~-~~~~la~~i~ 418 (464)
||+.+..| |++.+|++.+|+|.|+.-..+..... +.- ..+ +... ++- + +++.+++++.
T Consensus 261 ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~ 335 (373)
T PF02684_consen 261 ADAALAAS-----GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELL 335 (373)
T ss_pred CcchhhcC-----CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHH
Confidence 99988775 88999999999999975322111111 100 000 0110 111 2 8999999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 012436 419 KIISMPETERLEMAAAA 435 (464)
Q Consensus 419 ~l~~~~~~~~~~~~~~~ 435 (464)
+++. |++.++...+..
T Consensus 336 ~ll~-~~~~~~~~~~~~ 351 (373)
T PF02684_consen 336 ELLE-NPEKRKKQKELF 351 (373)
T ss_pred HHhc-CHHHHHHHHHHH
Confidence 9999 887654444433
No 124
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=99.00 E-value=3.2e-07 Score=81.92 Aligned_cols=229 Identities=12% Similarity=0.142 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhhcCCEEEEcCHHHHHHH-HHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEecc-CCCCCh
Q 012436 207 YYTFFSWMYGLVGSCADLAMVNSSWTQSHI-EKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQF-RPEKAH 284 (464)
Q Consensus 207 ~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~-~~~K~~ 284 (464)
..+.+..+.+.+.++..+|++ +.....++ ++.++.+.+....|.-.++. .........++...-+-+|+. ++..++
T Consensus 84 k~rlfy~lRR~aq~rvg~v~a-trGD~~~~a~~~~~v~~~llyfpt~m~~~-l~~~~~~~~~~~~~tIlvGNSgd~SN~H 161 (322)
T PRK02797 84 KFRLFYPLRRLAQKRVGHVFA-TRGDLSYFAQRHPKVPGSLLYFPTRMDPS-LNTMANDRQRAGKMTILVGNSGDRSNRH 161 (322)
T ss_pred hHHHHHHHHHHHHhhcCeEEE-ecchHHHHHHhcCCCCccEEecCCcchhh-hccccccccCCCceEEEEeCCCCCcccH
Confidence 344555566788899999999 77777775 45545566654444333322 221111112222344555654 566667
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE-ccCCChhHHHHHHhcCcEEEEcC
Q 012436 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYRDLVKLLGGAVVGIHSM 363 (464)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~~~~~~~l~~ad~~v~ps 363 (464)
..+++++.+... .++++++-=+-|.. +++|.+++++.++++--.+++.. ..++|.+|..++++.||+.++..
T Consensus 162 ie~L~~l~~~~~------~~v~ii~PlsYp~g-n~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~ 234 (322)
T PRK02797 162 IEALRALHQQFG------DNVKIIVPMGYPAN-NQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIF 234 (322)
T ss_pred HHHHHHHHHHhC------CCeEEEEECCcCCC-CHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEee
Confidence 666666655433 27777665443322 46899999999998875567766 47789999999999999998876
Q ss_pred -CCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC----CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012436 364 -IDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ----NAEEYADAIVKIISMPETERLEMAAAARRR 438 (464)
Q Consensus 364 -~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 438 (464)
+..|.| +++-.+..|+||+.+.......++.+. +.-++++ |...+.++=+++. ..-++.
T Consensus 235 ~RQQgiG-nl~lLi~~G~~v~l~r~n~fwqdl~e~----gv~Vlf~~d~L~~~~v~e~~rql~-----------~~dk~~ 298 (322)
T PRK02797 235 ARQQGIG-TLCLLIQLGKPVVLSRDNPFWQDLTEQ----GLPVLFTGDDLDEDIVREAQRQLA-----------SVDKNI 298 (322)
T ss_pred chhhHHh-HHHHHHHCCCcEEEecCCchHHHHHhC----CCeEEecCCcccHHHHHHHHHHHH-----------hhCcce
Confidence 577888 455588999999999766665666544 2333232 3333333322222 222222
Q ss_pred HHccCHHHHHHHHHHHHHHHHhh
Q 012436 439 AARFSEQRFYEDFKAAIRPILCH 461 (464)
Q Consensus 439 ~~~~s~~~~~~~~~~~~~~~~~~ 461 (464)
+. |+.+++.+.|.++++.....
T Consensus 299 I~-Ff~pn~~~~W~~~l~~~~g~ 320 (322)
T PRK02797 299 IA-FFSPNYLQGWRNALAIAAGE 320 (322)
T ss_pred ee-ecCHhHHHHHHHHHHHhhCC
Confidence 23 99999999999999876543
No 125
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.97 E-value=1e-08 Score=96.67 Aligned_cols=272 Identities=13% Similarity=0.085 Sum_probs=151.3
Q ss_pred hHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHH
Q 012436 129 VYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKI 205 (464)
Q Consensus 129 ~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (464)
+..+.+.+.+.+||+|+.+......+. .+...++| |.++|....+.|.. .+....
T Consensus 56 ~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ip-v~HieaGlRs~d~~------------------~g~~de--- 113 (346)
T PF02350_consen 56 IIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIP-VAHIEAGLRSGDRT------------------EGMPDE--- 113 (346)
T ss_dssp HHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-E-EEEES-----S-TT------------------SSTTHH---
T ss_pred HHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCC-EEEecCCCCccccC------------------CCCchh---
Confidence 344556688889998875444332222 45589999 66666331111110 001111
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCC-CCC-----CCc-cC---CC-CCCCCCcEEEE
Q 012436 206 VYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTS-----GLQ-VL---PL-ERSTEYPAIIS 274 (464)
Q Consensus 206 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~-d~~-----~~~-~~---~~-~~~~~~~~i~~ 274 (464)
. ....+-+.|+..++.++..++.+.+.+..++++.++.++. |.- ... .. .. ....++..++.
T Consensus 114 ~-------~R~~i~~la~lhf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt 186 (346)
T PF02350_consen 114 I-------NRHAIDKLAHLHFAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVT 186 (346)
T ss_dssp H-------HHHHHHHH-SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE
T ss_pred h-------hhhhhhhhhhhhccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEE
Confidence 1 1133447889999999999999999854478998887753 211 000 00 00 01233334444
Q ss_pred EeccCC---CCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHH
Q 012436 275 VAQFRP---EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVK 351 (464)
Q Consensus 275 ~G~~~~---~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~ 351 (464)
.-+... ......+.++++.+.+.. ++.+++.....+ .....+.+..+++ +++.+...++..++..
T Consensus 187 ~H~~t~~~~~~~~~~i~~~l~~L~~~~-----~~~vi~~~hn~p----~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ 254 (346)
T PF02350_consen 187 LHPVTNEDNPERLEQILEALKALAERQ-----NVPVIFPLHNNP----RGSDIIIEKLKKY---DNVRLIEPLGYEEYLS 254 (346)
T ss_dssp -S-CCCCTHH--HHHHHHHHHHHHHHT-----TEEEEEE--S-H----HHHHHHHHHHTT----TTEEEE----HHHHHH
T ss_pred eCcchhcCChHHHHHHHHHHHHHHhcC-----CCcEEEEecCCc----hHHHHHHHHhccc---CCEEEECCCCHHHHHH
Confidence 433332 234677888888887762 788888776322 3345566666555 3899999999999999
Q ss_pred HHhcCcEEEEcCCCCCCChHHH-HHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHcCCHHHHH
Q 012436 352 LLGGAVVGIHSMIDEHFGISVV-EYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIISMPETERL 429 (464)
Q Consensus 352 ~l~~ad~~v~ps~~e~~~~~~~-Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~~~~~~~~ 429 (464)
+++.|+++|--| | .+. ||.++|+|+|.-...|...+.... +.+.+ ++ |.+++.+++.++++ +++.+.
T Consensus 255 ll~~a~~vvgdS-----s-GI~eEa~~lg~P~v~iR~~geRqe~r~~---~~nvl-v~~~~~~I~~ai~~~l~-~~~~~~ 323 (346)
T PF02350_consen 255 LLKNADLVVGDS-----S-GIQEEAPSLGKPVVNIRDSGERQEGRER---GSNVL-VGTDPEAIIQAIEKALS-DKDFYR 323 (346)
T ss_dssp HHHHESEEEESS-----H-HHHHHGGGGT--EEECSSS-S-HHHHHT---TSEEE-ETSSHHHHHHHHHHHHH--HHHHH
T ss_pred HHhcceEEEEcC-----c-cHHHHHHHhCCeEEEecCCCCCHHHHhh---cceEE-eCCCHHHHHHHHHHHHh-ChHHHH
Confidence 999999998543 4 666 999999999999766776777666 55555 66 99999999999998 644443
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 430 EMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 430 ~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
++.. ....|.-...++++.++++
T Consensus 324 ~~~~----~~npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 324 KLKN----RPNPYGDGNASERIVEILK 346 (346)
T ss_dssp HHHC----S--TT-SS-HHHHHHHHHH
T ss_pred hhcc----CCCCCCCCcHHHHHHHhhC
Confidence 3321 1135666666777766653
No 126
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.96 E-value=1.6e-07 Score=88.39 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=54.2
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccc-----eecccCCccceeecC-
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMD-----IVLEEDGQQTGFLAQ- 408 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~-----~v~~~~~~~~g~~~~- 408 (464)
.+++.+.++.+ +++.++|+.||++|.-+ | ..++.||+++|+|+|..+..+..+. .+.+ .+.|...+
T Consensus 228 ~~~v~~~~~~~-~~~~~~l~~ad~vI~~~---G-~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~---~g~~~~l~~ 299 (321)
T TIGR00661 228 NENVEIRRITT-DNFKELIKNAELVITHG---G-FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED---LGCGIALEY 299 (321)
T ss_pred CCCEEEEECCh-HHHHHHHHhCCEEEECC---C-hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH---CCCEEEcCh
Confidence 46899998875 68999999999999763 2 2479999999999999887654222 1233 35565554
Q ss_pred -CHHHHHHHHHHHHc
Q 012436 409 -NAEEYADAIVKIIS 422 (464)
Q Consensus 409 -~~~~la~~i~~l~~ 422 (464)
+. ++.+++.+.++
T Consensus 300 ~~~-~~~~~~~~~~~ 313 (321)
T TIGR00661 300 KEL-RLLEAILDIRN 313 (321)
T ss_pred hhH-HHHHHHHhccc
Confidence 43 44444444443
No 127
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.93 E-value=5.8e-07 Score=81.38 Aligned_cols=222 Identities=12% Similarity=0.130 Sum_probs=138.9
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEecc-CCCCChHHHHH
Q 012436 212 SWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQF-RPEKAHPLQLE 289 (464)
Q Consensus 212 ~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~-~~~K~~~~ll~ 289 (464)
..+.+.+.++...|++ .+.....+++.++. +......|..++...... ......++..-+-+|+. ++.-++..+++
T Consensus 128 y~lRr~aq~rvg~V~a-t~GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~-~~~~~~~~~ltILvGNSgd~sNnHieaL~ 205 (360)
T PF07429_consen 128 YFLRRLAQKRVGHVFA-TRGDLAYFQQRYPRVPASLLYFPTRMDPALTLS-EKNKKNKGKLTILVGNSGDPSNNHIEALE 205 (360)
T ss_pred HHHHHHHHhhcCeEEE-EcchHHHHHHHcCCCCceEEEcCCCCchhhhcc-ccccCCCCceEEEEcCCCCCCccHHHHHH
Confidence 3455666788888876 67888888888865 444434444454432221 12122223344455654 55566666666
Q ss_pred HHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE-ccCCChhHHHHHHhcCcEEEEcC-CCCC
Q 012436 290 AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYRDLVKLLGGAVVGIHSM-IDEH 367 (464)
Q Consensus 290 a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~~~~~~~l~~ad~~v~ps-~~e~ 367 (464)
++++ ... .++++++-=+-+. .+++|.+++++.++++--.+++.. ..++|.+|..++++.||+.++.. +..|
T Consensus 206 ~L~~---~~~---~~~kIivPLsYg~-~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQg 278 (360)
T PF07429_consen 206 ALKQ---QFG---DDVKIIVPLSYGA-NNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQG 278 (360)
T ss_pred HHHH---hcC---CCeEEEEECCCCC-chHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhh
Confidence 5554 322 2666655432221 256899999999998754567876 47999999999999999999987 5778
Q ss_pred CChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeec-C--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCH
Q 012436 368 FGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLA-Q--NAEEYADAIVKIISMPETERLEMAAAARRRAARFSE 444 (464)
Q Consensus 368 ~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~-~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 444 (464)
.| .++-.+.+|+||+.+.......++.+. +-.-+.. + |.+.+.++=+++...|+.. -.|..
T Consensus 279 iG-nI~lLl~~G~~v~L~~~np~~~~l~~~---~ipVlf~~d~L~~~~v~ea~rql~~~dk~~------------iaFf~ 342 (360)
T PF07429_consen 279 IG-NICLLLQLGKKVFLSRDNPFWQDLKEQ---GIPVLFYGDELDEALVREAQRQLANVDKQQ------------IAFFA 342 (360)
T ss_pred Hh-HHHHHHHcCCeEEEecCChHHHHHHhC---CCeEEeccccCCHHHHHHHHHHHhhCcccc------------eeeeC
Confidence 88 566689999999999877665555444 2222222 2 6666666666665423211 12555
Q ss_pred HHHHHHHHHHHHHH
Q 012436 445 QRFYEDFKAAIRPI 458 (464)
Q Consensus 445 ~~~~~~~~~~~~~~ 458 (464)
++..+.|.+.+.-.
T Consensus 343 pny~~~w~~~l~~~ 356 (360)
T PF07429_consen 343 PNYLQGWRQALRLA 356 (360)
T ss_pred CchHHHHHHHHHHH
Confidence 66677776666543
No 128
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.92 E-value=1.9e-07 Score=89.98 Aligned_cols=156 Identities=15% Similarity=0.063 Sum_probs=97.4
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
.+++.+..|+.... ..+++.+....... +.++++...+ .+ . ..-++++|+...+++|+.
T Consensus 237 ~~~vyvslGt~~~~---~~l~~~~~~a~~~l-----~~~vi~~~~~-~~------~------~~~~~p~n~~v~~~~p~~ 295 (406)
T COG1819 237 RPIVYVSLGTVGNA---VELLAIVLEALADL-----DVRVIVSLGG-AR------D------TLVNVPDNVIVADYVPQL 295 (406)
T ss_pred CCeEEEEcCCcccH---HHHHHHHHHHHhcC-----CcEEEEeccc-cc------c------ccccCCCceEEecCCCHH
Confidence 34555566665544 33444443333332 7777777754 21 1 112347899999999776
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC---ccceecccCCccceeecC----CHHHHHHHHHHH
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP---KMDIVLEEDGQQTGFLAQ----NAEEYADAIVKI 420 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~---~~~~v~~~~~~~~g~~~~----~~~~la~~i~~l 420 (464)
+ ++..||++|+. |...++.||+.+|+|+|+-..+.- .++.+++ -+.|...+ +++.++++|.++
T Consensus 296 ~---~l~~ad~vI~h----GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~---~G~G~~l~~~~l~~~~l~~av~~v 365 (406)
T COG1819 296 E---LLPRADAVIHH----GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE---LGAGIALPFEELTEERLRAAVNEV 365 (406)
T ss_pred H---HhhhcCEEEec----CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH---cCCceecCcccCCHHHHHHHHHHH
Confidence 6 69999999965 344589999999999999765532 1223444 45664443 999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012436 421 ISMPETERLEMAAAARRRAARFSEQRFYEDFKAAI 455 (464)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 455 (464)
++ |+..++...+..+...+.-..+..++.+.+..
T Consensus 366 L~-~~~~~~~~~~~~~~~~~~~g~~~~a~~le~~~ 399 (406)
T COG1819 366 LA-DDSYRRAAERLAEEFKEEDGPAKAADLLEEFA 399 (406)
T ss_pred hc-CHHHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 98 87655544443333334455444444444443
No 129
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.92 E-value=3.2e-06 Score=81.66 Aligned_cols=348 Identities=12% Similarity=0.057 Sum_probs=178.1
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCch---------hHHHHHHhhcCc-ccCCCceeee
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPD---------SLLARAVDRFGV-ELLHPPKVVH 104 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~ 104 (464)
|||+++-.+....-|-|..+..+++.|.+..+++++++++..+..+.. ..+-..+..++. .+. .++..
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~ 78 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVV--GRVKK 78 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccc--hhHHH
Confidence 789998766654469999999999999999999999999987643220 011111111110 000 00000
Q ss_pred eeccccccccc-----CcceehhhhchhhhHHHHHHhhhcCCcEEEeccccccc---------ch-hhhccCceEEEEee
Q 012436 105 LYRRKWIEEST-----YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFT---------YP-LARIFGCRVICYTH 169 (464)
Q Consensus 105 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~---------~~-~~~~~~~p~v~~~h 169 (464)
...+.|.+.-. +...+.............+.++ +.|++++..+..+. +. ++++.|+|++++-+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gq 156 (426)
T PRK10017 79 VLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLS--GYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGH 156 (426)
T ss_pred HHHhhhhHHHHHhhhccccccccccchhhHHHHHHHHH--hCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECC
Confidence 00011100000 0000000000001111122222 56888854433221 11 55688999999877
Q ss_pred CCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEE
Q 012436 170 YPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKR 248 (464)
Q Consensus 170 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~ 248 (464)
+.. ++. .+....+.+.+++++|.|.+=.+...+.+++. |. ..++.+
T Consensus 157 siG-------------------------Pf~-------~~~~r~l~r~vl~~~~~ItvRD~~S~~~Lk~l-Gv~~~~v~~ 203 (426)
T PRK10017 157 SVG-------------------------PFQ-------DEQFNQLANYVFGHCDALILRESVSLDLMKRS-NITTAKVEH 203 (426)
T ss_pred cCC-------------------------CcC-------CHHHHHHHHHHHhcCCEEEEccHHHHHHHHHh-CCCccceEE
Confidence 321 011 11223456777899999999899999999776 55 356666
Q ss_pred ecCCCC-CCC--Cc--cC----C-CCCCCCCcEEEEE-eccCCC-C--C-----h-HHHHHHHHHHHHHhcCCCCCcEEE
Q 012436 249 VYPPCD-TSG--LQ--VL----P-LERSTEYPAIISV-AQFRPE-K--A-----H-PLQLEAFSVALRKLDADLPRPRLQ 308 (464)
Q Consensus 249 i~~~~d-~~~--~~--~~----~-~~~~~~~~~i~~~-G~~~~~-K--~-----~-~~ll~a~~~l~~~~~~~~p~~~l~ 308 (464)
.+.++- .+. .. +. . ......+.+|+.. ..+.+. + + . ..+.+++..+.++ +.+++
T Consensus 204 ~aDpAF~L~~~~~~~~~~~~~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~------g~~Vv 277 (426)
T PRK10017 204 GVDTAWLVDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDE------GYQVI 277 (426)
T ss_pred ecChhhhCCccccccccchhhhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHC------CCeEE
Confidence 554321 110 00 00 0 0001223444443 323211 1 1 1 3444555555443 45555
Q ss_pred EEcCCC-----CCccHHHHHHHHHHHHhcCCCCcEEE-ccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcE
Q 012436 309 FVGSCR-----NKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIP 382 (464)
Q Consensus 309 i~G~~~-----~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pv 382 (464)
++-... .++|.....++.+.. .-++++++ .+..+..|+..++++||++|..-. -+++=|++.|+|+
T Consensus 278 ~lp~~~~~~~~~~dD~~~~~~l~~~~---~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl-----Ha~I~a~~~gvP~ 349 (426)
T PRK10017 278 ALSTCTGIDSYNKDDRMVALNLRQHV---SDPARYHVVMDELNDLEMGKILGACELTVGTRL-----HSAIISMNFGTPA 349 (426)
T ss_pred EEecccCccCCCCchHHHHHHHHHhc---ccccceeEecCCCChHHHHHHHhhCCEEEEecc-----hHHHHHHHcCCCE
Confidence 554321 222333334444433 32334433 444566799999999999885522 2467799999999
Q ss_pred EEeCCCCCccceecccCCccceeec---C-CHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012436 383 IAHNSAGPKMDIVLEEDGQQTGFLA---Q-NAEEYADAIVKIISMPETERLEMAAAAR 436 (464)
Q Consensus 383 I~~~~~~~~~~~v~~~~~~~~g~~~---~-~~~~la~~i~~l~~~~~~~~~~~~~~~~ 436 (464)
|+-....=...+.... |...+.. + +.+++.+.+.++++ +.+..++.-..+.
T Consensus 350 i~i~Y~~K~~~~~~~l--g~~~~~~~~~~l~~~~Li~~v~~~~~-~r~~~~~~l~~~v 404 (426)
T PRK10017 350 IAINYEHKSAGIMQQL--GLPEMAIDIRHLLDGSLQAMVADTLG-QLPALNARLAEAV 404 (426)
T ss_pred EEeeehHHHHHHHHHc--CCccEEechhhCCHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 9976432112222220 1122322 2 78899999999999 8776554443333
No 130
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.87 E-value=2.6e-07 Score=90.73 Aligned_cols=252 Identities=15% Similarity=0.109 Sum_probs=144.1
Q ss_pred hhHHHHHHhhhcCCcEEEecccccccchhhh---ccCc--eEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhH
Q 012436 128 SVYLSWEALCKFTPLYYFDTSGYAFTYPLAR---IFGC--RVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQ 202 (464)
Q Consensus 128 ~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~---~~~~--p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (464)
......+.+++.+||+++.-....+.+.+++ ..|+ |++.|+- | .+|. |..
T Consensus 298 ~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs-P--------qVWA---------------WR~- 352 (608)
T PRK01021 298 RYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC-P--------SIWA---------------WRP- 352 (608)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC-c--------ccee---------------eCc-
Confidence 3445556677889998886666566655444 5664 8877765 2 2230 100
Q ss_pred HHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCC-CCCCCccC------CCCCC-CCCcEEEE
Q 012436 203 CKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVL------PLERS-TEYPAIIS 274 (464)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~-d~~~~~~~------~~~~~-~~~~~i~~ 274 (464)
+ | -+.+-+.+|.++|.=++..+.+++. .-+++.+.+|. |.-...+. ....+ +++.+.+.
T Consensus 353 -~----R-----ikki~k~vD~ll~IfPFE~~~y~~~---gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLL 419 (608)
T PRK01021 353 -K----R-----KTILEKYLDLLLLILPFEQNLFKDS---PLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAF 419 (608)
T ss_pred -c----h-----HHHHHHHhhhheecCccCHHHHHhc---CCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEE
Confidence 0 0 1333478899999999999999885 34677788875 32111100 01112 33445566
Q ss_pred EeccC--CCCChHHHHHHHH--HHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHH
Q 012436 275 VAQFR--PEKAHPLQLEAFS--VALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLV 350 (464)
Q Consensus 275 ~G~~~--~~K~~~~ll~a~~--~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~ 350 (464)
.|+-. -.+....++++++ .+. ++.++++....+ ...+.+++..+..+. ..+.+... ++-.
T Consensus 420 PGSR~~EI~rllPv~l~aa~~~~l~-------~~l~fvvp~a~~-----~~~~~i~~~~~~~~~-~~~~ii~~---~~~~ 483 (608)
T PRK01021 420 PGSRRGDILRNLTIQVQAFLASSLA-------STHQLLVSSANP-----KYDHLILEVLQQEGC-LHSHIVPS---QFRY 483 (608)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhc-------cCeEEEEecCch-----hhHHHHHHHHhhcCC-CCeEEecC---cchH
Confidence 77532 2356677777776 332 267777754322 122445555543321 12333321 1236
Q ss_pred HHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe-CCCCCcc----ceec---ccC------Cccc---eee---cC-C
Q 012436 351 KLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH-NSAGPKM----DIVL---EED------GQQT---GFL---AQ-N 409 (464)
Q Consensus 351 ~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~-~~~~~~~----~~v~---~~~------~~~~---g~~---~~-~ 409 (464)
+.+++||+.+..| |++.+|++.+|+|.|+. ....... -+++ +.. .+.. -++ .+ +
T Consensus 484 ~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~t 558 (608)
T PRK01021 484 ELMRECDCALAKC-----GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQ 558 (608)
T ss_pred HHHHhcCeeeecC-----CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCC
Confidence 8999999999775 88999999999999984 2221100 0011 000 0111 133 13 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012436 410 AEEYADAIVKIISMPETERLEMAAAARRRAA 440 (464)
Q Consensus 410 ~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 440 (464)
++.+++++ +++. |++.++++.++..+..+
T Consensus 559 pe~La~~l-~lL~-d~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 559 PEEVAAAL-DILK-TSQSKEKQKDACRDLYQ 587 (608)
T ss_pred HHHHHHHH-HHhc-CHHHHHHHHHHHHHHHH
Confidence 99999996 8888 88877777766554433
No 131
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.68 E-value=1.2e-06 Score=82.10 Aligned_cols=180 Identities=15% Similarity=0.102 Sum_probs=106.0
Q ss_pred cCCcEEEecccccccchhhh---cc--CceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHH
Q 012436 139 FTPLYYFDTSGYAFTYPLAR---IF--GCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSW 213 (464)
Q Consensus 139 ~~~Dvv~~~~~~~~~~~~~~---~~--~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
.+||+++......+.+.+++ .. ++|++.|+- | .+|. |.. ++
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~-P--------qvWA---------------Wr~--~R-------- 120 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYIL-P--------QVWA---------------WKK--GR-------- 120 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC-c--------ccee---------------eCc--ch--------
Confidence 58998886666566665444 34 799888765 2 2230 100 00
Q ss_pred HHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccC--CCCChHHHHHHH
Q 012436 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFR--PEKAHPLQLEAF 291 (464)
Q Consensus 214 ~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~--~~K~~~~ll~a~ 291 (464)
-+.+.+.+|.+.+.-++..+.+ + .+..++.||+-.. ....+....+++.+.++.|+-. -.+.+..+++++
T Consensus 121 -~~~i~k~~d~vl~ifPFE~~~y----g--~~~~~VGhPl~d~-~~~~~~~~~~~~~I~llPGSR~~Ei~~llP~~~~aa 192 (347)
T PRK14089 121 -AKILEKYCDFLASILPFEVQFY----Q--SKATYVGHPLLDE-IKEFKKDLDKEGTIAFMPGSRKSEIKRLMPIFKELA 192 (347)
T ss_pred -HHHHHHHHhhhhccCCCCHHHh----C--CCCEEECCcHHHh-hhhhhhhcCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 1333477888888888777766 3 3556788885322 1111111122333444555432 124556677888
Q ss_pred HHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChH
Q 012436 292 SVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGIS 371 (464)
Q Consensus 292 ~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~ 371 (464)
.++.++ ...+++.|.... +.+++...+. ..+.+.+ +..+.|+.||+.+..| |.+
T Consensus 193 ~~L~~~------~~~~~i~~a~~~-------~~i~~~~~~~---~~~~~~~-----~~~~~m~~aDlal~~S-----GT~ 246 (347)
T PRK14089 193 KKLEGK------EKILVVPSFFKG-------KDLKEIYGDI---SEFEISY-----DTHKALLEAEFAFICS-----GTA 246 (347)
T ss_pred HHHhhc------CcEEEEeCCCcH-------HHHHHHHhcC---CCcEEec-----cHHHHHHhhhHHHhcC-----cHH
Confidence 887653 367777776431 3444444332 2344442 4568999999988765 777
Q ss_pred HHHHHHhCCcEEEeC
Q 012436 372 VVEYMAAGAIPIAHN 386 (464)
Q Consensus 372 ~~Ea~a~G~PvI~~~ 386 (464)
.+|++.+|+|.|..-
T Consensus 247 TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 247 TLEAALIGTPFVLAY 261 (347)
T ss_pred HHHHHHhCCCEEEEE
Confidence 789999999999853
No 132
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.66 E-value=3.7e-06 Score=80.91 Aligned_cols=179 Identities=13% Similarity=0.164 Sum_probs=125.4
Q ss_pred CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC-CcEEEccCCC
Q 012436 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLL 345 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~ 345 (464)
++.+++..+. .-.|--...++.+..+.++. |+-.|++..-..-.+ +.++..+.++|++ ++|.|..-..
T Consensus 757 ~d~vvf~~FN--qLyKidP~~l~~W~~ILk~V----PnS~LwllrfPa~ge-----~rf~ty~~~~Gl~p~riifs~va~ 825 (966)
T KOG4626|consen 757 EDAVVFCNFN--QLYKIDPSTLQMWANILKRV----PNSVLWLLRFPAVGE-----QRFRTYAEQLGLEPDRIIFSPVAA 825 (966)
T ss_pred CCeEEEeech--hhhcCCHHHHHHHHHHHHhC----CcceeEEEeccccch-----HHHHHHHHHhCCCccceeeccccc
Confidence 4434444443 33454566788888888877 677777776533221 6888999999985 5788887777
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccc----eecccCCccce-eecCCHHHHHHHHHHH
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMD----IVLEEDGQQTG-FLAQNAEEYADAIVKI 420 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~----~v~~~~~~~~g-~~~~~~~~la~~i~~l 420 (464)
.+|-.+-.+-+|+.+-+....| -.+-+|.+.+|+|+|.-.....+.. .+.. -+.| +++.+.++..+.-.++
T Consensus 826 k~eHvrr~~LaDv~LDTplcnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~---~Gl~hliak~~eEY~~iaV~L 901 (966)
T KOG4626|consen 826 KEEHVRRGQLADVCLDTPLCNG-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTA---LGLGHLIAKNREEYVQIAVRL 901 (966)
T ss_pred hHHHHHhhhhhhhcccCcCcCC-cccchhhhccCCceeecccHHHHHHHHHHHHHH---cccHHHHhhhHHHHHHHHHHh
Confidence 8888888999999987755443 2356899999999998553322111 1111 2333 4446899999998999
Q ss_pred HcCCHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHhh
Q 012436 421 ISMPETERLEMAAAARRRA---ARFSEQRFYEDFKAAIRPILCH 461 (464)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~ 461 (464)
.. |.+..+++....+... .-|+-.+++..+++.|.++.++
T Consensus 902 at-d~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~ 944 (966)
T KOG4626|consen 902 AT-DKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKK 944 (966)
T ss_pred hc-CHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHH
Confidence 98 9998888887776544 3599999999999998887653
No 133
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=5.8e-07 Score=82.86 Aligned_cols=238 Identities=13% Similarity=0.115 Sum_probs=141.1
Q ss_pred HHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCC-------------------------CCC
Q 012436 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLER-------------------------STE 268 (464)
Q Consensus 214 ~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~-------------------------~~~ 268 (464)
+|+.+...|+.+.++|+-.+-..+........ .+.|||.+...|...-.-+ -++
T Consensus 245 ~ERaa~h~AhVFTTVSeITa~EAeHlLkRKPD-~itPNGLNV~KFsA~HEFQNLHA~~KekIndFVRGHF~GhlDFdLdk 323 (692)
T KOG3742|consen 245 LERAAAHTAHVFTTVSEITALEAEHLLKRKPD-VITPNGLNVKKFSAVHEFQNLHAQKKEKINDFVRGHFHGHLDFDLDK 323 (692)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC-eeCCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Confidence 67888888999999998776555554432222 3589999988775211000 044
Q ss_pred CcEEEEEeccC-CCCChHHHHHHHHHHHHHhcCCCCC---cEEEEEcCCCCCc------cHHHHHHHHH-----------
Q 012436 269 YPAIISVAQFR-PEKAHPLQLEAFSVALRKLDADLPR---PRLQFVGSCRNKS------DEERLQSLKD----------- 327 (464)
Q Consensus 269 ~~~i~~~G~~~-~~K~~~~ll~a~~~l~~~~~~~~p~---~~l~i~G~~~~~~------~~~~~~~l~~----------- 327 (464)
..+++.+||.+ ..||-|.+|+++++|.-..+....+ +.|.|.-...+.- .+....+|.+
T Consensus 324 TlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk~~~s~~TVVaFlImPaktN~FnVesLkgqAv~kqL~dtv~~Vk~~~Gk 403 (692)
T KOG3742|consen 324 TLYFFIAGRYEFSNKGADMFIESLARLNYLLKVSGSPKTVVAFLIMPAKTNSFNVESLKGQAVRKQLWDTVNEVKEKVGK 403 (692)
T ss_pred eEEEEEeeeeeeccCchHHHHHHHHHhHHHHeecCCCceEEEEEEeecCCCccchhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 56778889885 6799999999999985443211012 2233332211100 0000011110
Q ss_pred ----------------------------H----------------------------HHhcCC----CCcE--EEccC--
Q 012436 328 ----------------------------K----------------------------SIELKV----DGNV--EFYKN-- 343 (464)
Q Consensus 328 ----------------------------~----------------------------~~~~~l----~~~v--~~~g~-- 343 (464)
. +++.++ .++| .|++.
T Consensus 404 rifd~~l~g~lPd~~ell~~~d~v~lKr~i~a~~r~slPPv~THNm~dDa~DpiL~~iRr~~LFN~~~DRVKvifHPEFL 483 (692)
T KOG3742|consen 404 RIFDHCLRGELPDLDELLDKDDLVLLKRCIFALQRQSLPPVCTHNMIDDANDPILSSIRRIGLFNSPSDRVKVIFHPEFL 483 (692)
T ss_pred HHHHHHhcccCCChHHhhChhHHHHHHHHHHHhccCCCCCceeccccccccchHHHHhHhhhcccCcccceEEEecHHHh
Confidence 0 011110 0233 33321
Q ss_pred -----CChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC---ccceecccCCcccee-ecC------
Q 012436 344 -----LLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP---KMDIVLEEDGQQTGF-LAQ------ 408 (464)
Q Consensus 344 -----~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~---~~~~v~~~~~~~~g~-~~~------ 408 (464)
+=.-|..++.+.|++.|+||.+|++|.+..|.--+|+|.|+|+..|. ++|.+.+. ...|+ +++
T Consensus 484 ss~sPllglDYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~--~ayGIYIvDRRfks~ 561 (692)
T KOG3742|consen 484 SSTSPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDP--QAYGIYIVDRRFKSP 561 (692)
T ss_pred ccCCCCcCCCHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCc--hhceEEEEecccCCh
Confidence 11237778899999999999999999999999999999999987654 34444431 23453 332
Q ss_pred --CHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHH-HccCHHHHHHHHHHHHH
Q 012436 409 --NAEEYADAIVKIISMPETERLEMAAAAR-RRA-ARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 409 --~~~~la~~i~~l~~~~~~~~~~~~~~~~-~~~-~~~s~~~~~~~~~~~~~ 456 (464)
+.+++++-+.++.. ...++++.++.+ +.+ .-.+|..+-..|.+.=.
T Consensus 562 deSv~qL~~~m~~F~~--qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~ 611 (692)
T KOG3742|consen 562 DESVQQLASFMYEFCK--QSRRQRIIQRNRTERLSDLLDWKYLGRYYRKARH 611 (692)
T ss_pred hhHHHHHHHHHHHHHH--HHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHH
Confidence 56667777777764 334555544433 445 67888888776665443
No 134
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.53 E-value=5.6e-05 Score=68.44 Aligned_cols=333 Identities=16% Similarity=0.155 Sum_probs=171.5
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKW 110 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (464)
..+.+||+|.+++.-.- |.-+....+|.+|.+.-.+.+|+++++...... ...+..+.++.++.-..
T Consensus 6 ~~~~~Ri~~Yshd~~Gl-GHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~------------F~~~~gVd~V~LPsl~k 72 (400)
T COG4671 6 ASKRPRILFYSHDLLGL-GHLRRALRIAHALVEDYLGFDILIISGGPPAGG------------FPGPAGVDFVKLPSLIK 72 (400)
T ss_pred hhccceEEEEehhhccc-hHHHHHHHHHHHHhhcccCceEEEEeCCCccCC------------CCCcccCceEecCceEe
Confidence 34556999776655434 688888999999999844488899888652211 11112223333322111
Q ss_pred cccccCcceehh--hhchhh--hHHHHHHhhhcCCcEEEe-cccccccc---h---hhhccCceEEEEeeCCcchhhhhh
Q 012436 111 IEESTYPRFTMI--GQSFGS--VYLSWEALCKFTPLYYFD-TSGYAFTY---P---LARIFGCRVICYTHYPTISLDMIS 179 (464)
Q Consensus 111 ~~~~~~~~~~~~--~~~~~~--~~~~~~~l~~~~~Dvv~~-~~~~~~~~---~---~~~~~~~p~v~~~h~p~~~~~~~~ 179 (464)
..+..+.....- ..-+.. .......++.++||+++. ...+..-. + ..+..+.+.+.-+. ++.+
T Consensus 73 ~~~G~~~~~d~~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr------~i~D 146 (400)
T COG4671 73 GDNGEYGLVDLDGDLEETKKLRSQLILSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLR------SIRD 146 (400)
T ss_pred cCCCceeeeecCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehH------hhhh
Confidence 111111110000 000111 112334577889998872 22222110 1 11222323333222 1111
Q ss_pred cccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCC--CeEEecCCCCCCC
Q 012436 180 RVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPD--RIKRVYPPCDTSG 257 (464)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~--~i~~i~~~~d~~~ 257 (464)
..... ...|.. ...++.+-++.|.|++..+-.-..+.+.|+... +-.+.+-|+--..
T Consensus 147 ~p~~~-----------~~~w~~----------~~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~ 205 (400)
T COG4671 147 IPQEL-----------EADWRR----------AETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRS 205 (400)
T ss_pred chhhh-----------ccchhh----------hHHHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeecc
Confidence 11000 001110 112344457889999998877766666666521 2233454542111
Q ss_pred C--ccCCCCC-CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcE---EEEEcCCCCCccHHHHHHHHHHHHh
Q 012436 258 L--QVLPLER-STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPR---LQFVGSCRNKSDEERLQSLKDKSIE 331 (464)
Q Consensus 258 ~--~~~~~~~-~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~---l~i~G~~~~~~~~~~~~~l~~~~~~ 331 (464)
. ...+... .++..+++.+| ...-|-+.+-.++...... |+++ +++.|.- .. +.-++.+...+.+
T Consensus 206 ~~~~~~p~~~~pE~~~Ilvs~G--GG~dG~eLi~~~l~A~~~l-----~~l~~~~~ivtGP~-MP--~~~r~~l~~~A~~ 275 (400)
T COG4671 206 LPHLPLPPHEAPEGFDILVSVG--GGADGAELIETALAAAQLL-----AGLNHKWLIVTGPF-MP--EAQRQKLLASAPK 275 (400)
T ss_pred CcCCCCCCcCCCccceEEEecC--CChhhHHHHHHHHHHhhhC-----CCCCcceEEEeCCC-CC--HHHHHHHHHhccc
Confidence 1 1112222 34456677777 4555655544444433321 2333 4555542 21 2334555555543
Q ss_pred cCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccce-ecccCC---ccceeec
Q 012436 332 LKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDI-VLEEDG---QQTGFLA 407 (464)
Q Consensus 332 ~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~-v~~~~~---~~~g~~~ 407 (464)
.++|++..+. .++.++++.|+..|.- .| =+++.|-+++|||.+.-......+|- +.-.-- |-...+.
T Consensus 276 ---~p~i~I~~f~--~~~~~ll~gA~~vVSm---~G-YNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~ 346 (400)
T COG4671 276 ---RPHISIFEFR--NDFESLLAGARLVVSM---GG-YNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLL 346 (400)
T ss_pred ---CCCeEEEEhh--hhHHHHHHhhheeeec---cc-chhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeC
Confidence 4689999998 9999999999998854 23 35789999999999887655443332 211000 2223333
Q ss_pred C---CHHHHHHHHHHHHc
Q 012436 408 Q---NAEEYADAIVKIIS 422 (464)
Q Consensus 408 ~---~~~~la~~i~~l~~ 422 (464)
+ +++.++++|..+++
T Consensus 347 pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 347 PENLTPQNLADALKAALA 364 (400)
T ss_pred cccCChHHHHHHHHhccc
Confidence 3 89999999998886
No 135
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.47 E-value=1.6e-06 Score=70.85 Aligned_cols=135 Identities=14% Similarity=0.170 Sum_probs=77.7
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||+++.... +.++.+++++|.+.|++++ +++...+. ... .. ..++.++.++... .
T Consensus 1 KIl~i~~~~------~~~~~~~~~~L~~~g~~V~--ii~~~~~~--~~~----~~------~~~i~~~~~~~~~-----k 55 (139)
T PF13477_consen 1 KILLIGNTP------STFIYNLAKELKKRGYDVH--IITPRNDY--EKY----EI------IEGIKVIRLPSPR-----K 55 (139)
T ss_pred CEEEEecCc------HHHHHHHHHHHHHCCCEEE--EEEcCCCc--hhh----hH------hCCeEEEEecCCC-----C
Confidence 577776543 4578899999999995555 44443211 111 10 1122444443110 0
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEEecccccc-cch--hhhccC-ceEEEEeeCCcchhhhhhcccccccccCCC
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAF-TYP--LARIFG-CRVICYTHYPTISLDMISRVREGSSMYNNN 191 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~-~~~--~~~~~~-~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~ 191 (464)
. ....+. +....+.+++.+||+||++...+. .++ +++..+ +|+|++.|+... +..
T Consensus 56 -~----~~~~~~-~~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~~--------------~~~- 114 (139)
T PF13477_consen 56 -S----PLNYIK-YFRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSDF--------------YNS- 114 (139)
T ss_pred -c----cHHHHH-HHHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCee--------------ecC-
Confidence 0 111222 346778899999999998887653 333 345677 899999994321 000
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcC
Q 012436 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNS 229 (464)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S 229 (464)
.. ..+...++.+.+++++|.+++.|
T Consensus 115 ---------~~----~~~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 115 ---------SK----KKKLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred ---------Cc----hHHHHHHHHHHHHHhCCEEEEcC
Confidence 00 01134456788889999999876
No 136
>PLN02448 UDP-glycosyltransferase family protein
Probab=98.44 E-value=0.00035 Score=68.98 Aligned_cols=140 Identities=16% Similarity=0.081 Sum_probs=78.1
Q ss_pred CCcEEEEEeccCCC--CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 268 EYPAIISVAQFRPE--KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 268 ~~~~i~~~G~~~~~--K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
+..+++.+|+.... +.+..++++++.. +..++++..++. ..+.+.. .+++.+.+++|
T Consensus 274 ~~vvyvsfGs~~~~~~~~~~~~~~~l~~~---------~~~~lw~~~~~~-------~~~~~~~-----~~~~~v~~w~p 332 (459)
T PLN02448 274 GSVLYVSLGSFLSVSSAQMDEIAAGLRDS---------GVRFLWVARGEA-------SRLKEIC-----GDMGLVVPWCD 332 (459)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhC---------CCCEEEEEcCch-------hhHhHhc-----cCCEEEeccCC
Confidence 34567777876332 2233444444332 556666554321 1222222 24778889998
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCcc---ceecccCCccceeec---------CCHHHH
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKM---DIVLEEDGQQTGFLA---------QNAEEY 413 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~---------~~~~~l 413 (464)
+.++ |+..++..+- . .+.-.+++||+++|+|+|+-...+.-. ..+.+. -+.|+-. -+.+++
T Consensus 333 Q~~i---L~h~~v~~fv-t-HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~--~g~G~~~~~~~~~~~~~~~~~l 405 (459)
T PLN02448 333 QLKV---LCHSSVGGFW-T-HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVED--WKIGWRVKREVGEETLVGREEI 405 (459)
T ss_pred HHHH---hccCccceEE-e-cCchhHHHHHHHcCCCEEeccccccchhhHHHHHHH--hCceEEEecccccCCcCcHHHH
Confidence 7775 5566653222 1 233458999999999999976543211 112110 1234332 178899
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHH
Q 012436 414 ADAIVKIISMPE-TERLEMAAAAR 436 (464)
Q Consensus 414 a~~i~~l~~~~~-~~~~~~~~~~~ 436 (464)
++++++++. ++ ++-+++++++.
T Consensus 406 ~~av~~vl~-~~~~~~~~~r~~a~ 428 (459)
T PLN02448 406 AELVKRFMD-LESEEGKEMRRRAK 428 (459)
T ss_pred HHHHHHHhc-CCchhHHHHHHHHH
Confidence 999999998 64 33444444444
No 137
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.42 E-value=4.5e-05 Score=73.44 Aligned_cols=212 Identities=17% Similarity=0.194 Sum_probs=105.2
Q ss_pred HhhcCCEEEEcCHHHHHHHHHHhCCCC-CeEEecCCCCC-CC-CccCC---------CCCCCCCcEEEEEeccCCCCCh-
Q 012436 218 VGSCADLAMVNSSWTQSHIEKLWGIPD-RIKRVYPPCDT-SG-LQVLP---------LERSTEYPAIISVAQFRPEKAH- 284 (464)
Q Consensus 218 ~~~~ad~vi~~S~~~~~~~~~~~~~~~-~i~~i~~~~d~-~~-~~~~~---------~~~~~~~~~i~~~G~~~~~K~~- 284 (464)
..+..|.+++.|+..++.+.+.++.+. ++ +..|..- +. +.... .....++.+|+|+-+++.....
T Consensus 131 ~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i--~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~ 208 (369)
T PF04464_consen 131 NYRNYDYFIVSSEFEKEIFKKAFGYPEDKI--LVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNE 208 (369)
T ss_dssp HHTT-SEEEESSHHHHHHHHHHTT--GGGE--EES--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--G
T ss_pred hccCCcEEEECCHHHHHHHHHHhccCcceE--EEeCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeeccccccccc
Confidence 448889999999999999999988743 45 3444321 11 11100 1122455689999765443222
Q ss_pred -----HHH--HHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHh-cCCCCcEEEccCCChhHHHHHHhcC
Q 012436 285 -----PLQ--LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIE-LKVDGNVEFYKNLLYRDLVKLLGGA 356 (464)
Q Consensus 285 -----~~l--l~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~~~~~~~l~~a 356 (464)
... .+.+.. ... +++.+++-... ........ ....++|.+...- +++.+++..|
T Consensus 209 ~~~~~~~~~~~~~l~~-~~~-----~~~~li~k~Hp----------~~~~~~~~~~~~~~~i~~~~~~--~~~~~ll~~a 270 (369)
T PF04464_consen 209 YFKFFFSDLDFEKLNF-LLK-----NNYVLIIKPHP----------NMKKKFKDFKEDNSNIIFVSDN--EDIYDLLAAA 270 (369)
T ss_dssp GSS----TT-HHHHHH-HHT-----TTEEEEE--SH----------HHHTT----TT-TTTEEE-TT---S-HHHHHHT-
T ss_pred cccccccccCHHHHHH-HhC-----CCcEEEEEeCc----------hhhhchhhhhccCCcEEECCCC--CCHHHHHHhc
Confidence 111 222321 222 37777776542 12222221 2234677776654 5899999999
Q ss_pred cEEEEcCCCCCCChHHHHHHHhCCcEEEeC--CCCCc--cceecccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHHH
Q 012436 357 VVGIHSMIDEHFGISVVEYMAAGAIPIAHN--SAGPK--MDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEMA 432 (464)
Q Consensus 357 d~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~--~~~~~--~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~~ 432 (464)
|++|. .++-.+.|++.+++|||... ..... ..+..+......|-.+.+.++|.++|..+++ ++...++..
T Consensus 271 DiLIT-----DySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~eL~~~i~~~~~-~~~~~~~~~ 344 (369)
T PF04464_consen 271 DILIT-----DYSSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFEELIEAIENIIE-NPDEYKEKR 344 (369)
T ss_dssp SEEEE-----SS-THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHHHHHHTTHHH-HHHHTHHHH
T ss_pred CEEEE-----echhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHHHHHHHHHhhhh-CCHHHHHHH
Confidence 99883 45668999999999999653 21110 0111110013445666799999999999887 665544433
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH
Q 012436 433 AAARRRAARFSEQRFYEDFKAAI 455 (464)
Q Consensus 433 ~~~~~~~~~~s~~~~~~~~~~~~ 455 (464)
+..++..-.+.-.+.++++.+.+
T Consensus 345 ~~~~~~~~~~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 345 EKFRDKFFKYNDGNSSERIVNYI 367 (369)
T ss_dssp HHHHHHHSTT--S-HHHHHHHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHH
Confidence 33343332344455666665554
No 138
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.39 E-value=0.00015 Score=64.68 Aligned_cols=293 Identities=13% Similarity=0.080 Sum_probs=160.9
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||.|-..+. -..++...+...|.+.| ++|.+.+.+.+ ...+..+.+|+.. ..+.. ....+
T Consensus 1 mkVwiDI~n~----~hvhfFk~lI~elekkG--~ev~iT~rd~~-----~v~~LLd~ygf~~------~~Igk--~g~~t 61 (346)
T COG1817 1 MKVWIDIGNP----PHVHFFKNLIWELEKKG--HEVLITCRDFG-----VVTELLDLYGFPY------KSIGK--HGGVT 61 (346)
T ss_pred CeEEEEcCCc----chhhHHHHHHHHHHhCC--eEEEEEEeecC-----cHHHHHHHhCCCe------Eeecc--cCCcc
Confidence 5777654443 35678899999999999 66666665532 2223344455522 11111 10000
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch-hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~-~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~ 193 (464)
.-..+..+......+.+++.+++||+.+.-. +..++ ++...|+|.++....+..
T Consensus 62 ---l~~Kl~~~~eR~~~L~ki~~~~kpdv~i~~~--s~~l~rvafgLg~psIi~~D~ehA-------------------- 116 (346)
T COG1817 62 ---LKEKLLESAERVYKLSKIIAEFKPDVAIGKH--SPELPRVAFGLGIPSIIFVDNEHA-------------------- 116 (346)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhcCCceEeecC--CcchhhHHhhcCCceEEecCChhH--------------------
Confidence 0001122233345566778899999998522 22223 666789999997764331
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCC-----------CCCCccCC
Q 012436 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCD-----------TSGLQVLP 262 (464)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d-----------~~~~~~~~ 262 (464)
....+..+..||.+++++....+.+...+..+.++ .-+||+- .+.+....
T Consensus 117 ------------------~~qnkl~~Pla~~ii~P~~~~~~~~~~~G~~p~~i-~~~~giae~~~v~~f~pd~evlkeLg 177 (346)
T COG1817 117 ------------------EAQNKLTLPLADVIITPEAIDEEELLDFGADPNKI-SGYNGIAELANVYGFVPDPEVLKELG 177 (346)
T ss_pred ------------------HHHhhcchhhhhheecccccchHHHHHhCCCccce-ecccceeEEeecccCCCCHHHHHHcC
Confidence 01135666889999998888888887775434444 3344432 11111111
Q ss_pred CCCCCCCcEEEE-E---e--ccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCC
Q 012436 263 LERSTEYPAIIS-V---A--QFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDG 336 (464)
Q Consensus 263 ~~~~~~~~~i~~-~---G--~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~ 336 (464)
.. .+..+|++ . | -....++.+.+.++++.+++. -.+++-.. ++.++..+++ .
T Consensus 178 l~--~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~--------giV~ipr~---------~~~~eife~~---~ 235 (346)
T COG1817 178 LE--EGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKY--------GIVLIPRE---------KEQAEIFEGY---R 235 (346)
T ss_pred CC--CCCceEEEeeccccceeeccccchhhHHHHHHHHHhC--------cEEEecCc---------hhHHHHHhhh---c
Confidence 11 22233332 1 1 123456777777888877553 24454432 2333334332 1
Q ss_pred cEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC--ccceecccCCccceeecC--CHHH
Q 012436 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP--KMDIVLEEDGQQTGFLAQ--NAEE 412 (464)
Q Consensus 337 ~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~--~~~~v~~~~~~~~g~~~~--~~~~ 412 (464)
++...... -|-.+++-.|++++ .+.|...-||...|+|.|+..-|-. ..+.. -+.|.++. |+.+
T Consensus 236 n~i~pk~~--vD~l~Llyya~lvi-----g~ggTMarEaAlLGtpaIs~~pGkll~vdk~l-----ie~G~~~~s~~~~~ 303 (346)
T COG1817 236 NIIIPKKA--VDTLSLLYYATLVI-----GAGGTMAREAALLGTPAISCYPGKLLAVDKYL-----IEKGLLYHSTDEIA 303 (346)
T ss_pred cccCCccc--ccHHHHHhhhheee-----cCCchHHHHHHHhCCceEEecCCccccccHHH-----HhcCceeecCCHHH
Confidence 23222222 45556888888877 3446667999999999999874411 11222 24566554 7766
Q ss_pred HHHHHHHHHcCCH
Q 012436 413 YADAIVKIISMPE 425 (464)
Q Consensus 413 la~~i~~l~~~~~ 425 (464)
..+...+.+. ++
T Consensus 304 ~~~~a~~~l~-~~ 315 (346)
T COG1817 304 IVEYAVRNLK-YR 315 (346)
T ss_pred HHHHHHHHhh-ch
Confidence 6666666665 44
No 139
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=98.28 E-value=8.2e-06 Score=73.28 Aligned_cols=186 Identities=12% Similarity=0.015 Sum_probs=93.3
Q ss_pred eEEEecCCCCCC---CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHh-----hcC------ccc-----
Q 012436 36 SVAFFHPNTNDG---GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD-----RFG------VEL----- 96 (464)
Q Consensus 36 kI~~~~~~~~~~---GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~------~~~----- 96 (464)
||++++.-+.+. ||...++..|+++|++.| ++|.++++.+ ....+...+ .+. +.+
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G--~~V~Vi~P~y----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 74 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQG--HDVRVIMPKY----GFIDEEYFQLEPVRRLSVPFGGPVPVGVWYE 74 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT---EEEEEEE-T----HHHHHHCTTEEEEEEES-STTCEEEEE----
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcC--CeEEEEEccc----hhhhhhhhcceEEEEeccccccccccccceE
Confidence 788888766662 899999999999999999 6666666654 222221100 000 000
Q ss_pred -------CCCceeeeeeccccccc-ccCcc-----eehhhhchhhhHHHHHHhhh--cCCcEEEecccccccch-hhh-c
Q 012436 97 -------LHPPKVVHLYRRKWIEE-STYPR-----FTMIGQSFGSVYLSWEALCK--FTPLYYFDTSGYAFTYP-LAR-I 159 (464)
Q Consensus 97 -------~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~l~~--~~~Dvv~~~~~~~~~~~-~~~-~ 159 (464)
..+++++.+....+... ..+.. .....++......+.+.++. .+|||||++..+....| +.+ .
T Consensus 75 ~~v~~~~~~~v~v~~i~~~~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~lk~~ 154 (245)
T PF08323_consen 75 VRVYRYPVDGVPVYFIDNPEYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAPLYLKER 154 (245)
T ss_dssp EEEEEEEETTEEEEEEESHHHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHHHHC
T ss_pred EEEEEEEcCCccEEEecChhhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHhccc
Confidence 12334454444333221 12211 11222222333444555555 58999999998888876 333 2
Q ss_pred c-------CceEEEEeeCCcchhhhhh----cccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEc
Q 012436 160 F-------GCRVICYTHYPTISLDMIS----RVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVN 228 (464)
Q Consensus 160 ~-------~~p~v~~~h~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~ 228 (464)
. ++|+++++|+......... ..+=....+..... ..+.. .. .+.+..+..||.|+++
T Consensus 155 ~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~---~~~~~--------~i-n~lk~gi~~AD~v~TV 222 (245)
T PF08323_consen 155 YQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDE---YEFYG--------QI-NFLKAGIVYADKVTTV 222 (245)
T ss_dssp CSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTT---TEETT--------EE-EHHHHHHHHSSEEEES
T ss_pred cccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccc---ccccc--------cc-CHHHHHHHhcCEeeeC
Confidence 2 6999999995332111100 00000000000000 00000 01 1345677999999999
Q ss_pred CHHHHHHHHHH
Q 012436 229 SSWTQSHIEKL 239 (464)
Q Consensus 229 S~~~~~~~~~~ 239 (464)
|+..++++...
T Consensus 223 S~~Ya~Ei~~~ 233 (245)
T PF08323_consen 223 SPTYAREIQTP 233 (245)
T ss_dssp SHHHHHHTTSH
T ss_pred CHHHHHHHhCc
Confidence 99998887554
No 140
>PLN03007 UDP-glucosyltransferase family protein
Probab=98.27 E-value=0.002 Score=64.15 Aligned_cols=85 Identities=14% Similarity=0.015 Sum_probs=52.7
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCccceee-----
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQTGFL----- 406 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~~g~~----- 406 (464)
+.++.+.+++|+.+ +|+.+++..+-+ +-| -++++||+++|+|+|+-...+-- ...+.+..+-+.|+-
T Consensus 344 ~~g~~v~~w~PQ~~---iL~h~~v~~fvt-H~G-~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 418 (482)
T PLN03007 344 GKGLIIRGWAPQVL---ILDHQATGGFVT-HCG-WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLV 418 (482)
T ss_pred cCCEEEecCCCHHH---HhccCccceeee-cCc-chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccc
Confidence 45789999998865 577777633332 223 45899999999999997644320 111111000112220
Q ss_pred --c-C--CHHHHHHHHHHHHcCCH
Q 012436 407 --A-Q--NAEEYADAIVKIISMPE 425 (464)
Q Consensus 407 --~-~--~~~~la~~i~~l~~~~~ 425 (464)
. + +.+++++++++++. ++
T Consensus 419 ~~~~~~~~~~~l~~av~~~m~-~~ 441 (482)
T PLN03007 419 KVKGDFISREKVEKAVREVIV-GE 441 (482)
T ss_pred ccccCcccHHHHHHHHHHHhc-Cc
Confidence 1 2 88999999999998 75
No 141
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=3.6e-05 Score=67.43 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=81.3
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHH
Q 012436 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (464)
Q Consensus 270 ~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~ 349 (464)
-+++..|.-++. + ..++.+..+.+. ++.+.++-+..+. ....+++.++. .+++.++-.. +++
T Consensus 160 ~ilI~lGGsDpk-~--lt~kvl~~L~~~------~~nl~iV~gs~~p----~l~~l~k~~~~---~~~i~~~~~~--~dm 221 (318)
T COG3980 160 DILITLGGSDPK-N--LTLKVLAELEQK------NVNLHIVVGSSNP----TLKNLRKRAEK---YPNINLYIDT--NDM 221 (318)
T ss_pred eEEEEccCCChh-h--hHHHHHHHhhcc------CeeEEEEecCCCc----chhHHHHHHhh---CCCeeeEecc--hhH
Confidence 356677764443 3 345666666554 4455554432221 23566666655 4688887776 899
Q ss_pred HHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe----CCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCH
Q 012436 350 VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH----NSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPE 425 (464)
Q Consensus 350 ~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~ 425 (464)
.++|.+||+.|.. -|.++.|+...|+|.++- +......++-.--.....|+. .........+.++.+ |+
T Consensus 222 a~LMke~d~aI~A-----aGstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~-l~~~~~~~~~~~i~~-d~ 294 (318)
T COG3980 222 AELMKEADLAISA-----AGSTLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYH-LKDLAKDYEILQIQK-DY 294 (318)
T ss_pred HHHHHhcchheec-----cchHHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCC-CchHHHHHHHHHhhh-CH
Confidence 9999999998854 388999999999994332 211111111000000122322 244556666777777 88
Q ss_pred HHHHHHHHHH
Q 012436 426 TERLEMAAAA 435 (464)
Q Consensus 426 ~~~~~~~~~~ 435 (464)
..++.+....
T Consensus 295 ~~rk~l~~~~ 304 (318)
T COG3980 295 ARRKNLSFGS 304 (318)
T ss_pred HHhhhhhhcc
Confidence 7776665443
No 142
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.91 E-value=0.0002 Score=59.50 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=68.0
Q ss_pred hcCCcEEEecccccccchhhh-ccCceEEEEeeC---CcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHH
Q 012436 138 KFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHY---PTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSW 213 (464)
Q Consensus 138 ~~~~Dvv~~~~~~~~~~~~~~-~~~~p~v~~~h~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
.+.||+|+.|+++...+.+.. .+++|++.|+-+ +. ..|. .|..+. ...... ....+..+.
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~~y~~~-g~d~---------~FDpe~---p~~~~~---~~~~r~rN~ 127 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEFYYRAS-GADV---------GFDPEF---PPSLDD---RARLRMRNA 127 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEEEecCC-CCcC---------CCCCCC---CCCHHH---HHHHHHHhH
Confidence 357899999999998876655 779999988762 11 0010 010010 001111 112222333
Q ss_pred HHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCC
Q 012436 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGL 258 (464)
Q Consensus 214 ~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~ 258 (464)
.....+..||..+++|.+.++.+-..+ .+|+.||+.|+|++.+
T Consensus 128 ~~l~~l~~~D~~isPT~wQ~~~fP~~~--r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 128 HNLLALEQADAGISPTRWQRSQFPAEF--RSKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHHHHhCCcCcCCCHHHHHhCCHHH--HcCcEEeecccchhhc
Confidence 345567889999999999999998877 7899999999998754
No 143
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.88 E-value=0.0016 Score=60.05 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=63.7
Q ss_pred EEEEEeccCCCC--ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 271 AIISVAQFRPEK--AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 271 ~i~~~G~~~~~K--~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
.++..|.-.+.| ..+.+.+.++.+.++ ++++++.|+..+. +..++..+..+....+.+.|..+-.|
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~------~~~ivl~g~~~e~------~~~~~i~~~~~~~~~~~~~~~~~l~e 191 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLAR------GARVVLTGGPAER------ELAEEIAAALGGPRVVNLAGKTSLRE 191 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHC------CCEEEEEechhhH------HHHHHHHHhcCCCccccCcCCCCHHH
Confidence 444455444444 346777777777654 6788999865422 23333333332233456778888899
Q ss_pred HHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 349 LVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
+..+++.||++|.+ ++ | .+--|.+.|+|+|+--
T Consensus 192 ~~~li~~~~l~I~~---Ds-g-~~HlA~a~~~p~i~l~ 224 (279)
T cd03789 192 LAALLARADLVVTN---DS-G-PMHLAAALGTPTVALF 224 (279)
T ss_pred HHHHHHhCCEEEee---CC-H-HHHHHHHcCCCEEEEE
Confidence 99999999999976 32 2 3444579999999854
No 144
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.75 E-value=1.5e-06 Score=73.44 Aligned_cols=89 Identities=24% Similarity=0.295 Sum_probs=59.7
Q ss_pred CcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cc----eecccCCccceeecC
Q 012436 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MD----IVLEEDGQQTGFLAQ 408 (464)
Q Consensus 336 ~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~----~v~~~~~~~~g~~~~ 408 (464)
.+|.+.++. +++.++|+.||+.|.- +.+.++.|++++|+|.|.-...+.. .+ .+.. ...+....
T Consensus 55 ~~v~~~~~~--~~m~~~m~~aDlvIs~----aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~---~g~~~~~~ 125 (167)
T PF04101_consen 55 PNVKVFGFV--DNMAELMAAADLVISH----AGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK---KGAAIMLD 125 (167)
T ss_dssp CCCEEECSS--SSHHHHHHHHSEEEEC----S-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH---CCCCCCSE
T ss_pred CcEEEEech--hhHHHHHHHcCEEEeC----CCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH---cCCccccC
Confidence 589999998 7899999999988853 4467999999999999987665521 10 1112 23333332
Q ss_pred ----CHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012436 409 ----NAEEYADAIVKIISMPETERLEMAAA 434 (464)
Q Consensus 409 ----~~~~la~~i~~l~~~~~~~~~~~~~~ 434 (464)
+++++.++|.++++ ++.....+.++
T Consensus 126 ~~~~~~~~L~~~i~~l~~-~~~~~~~~~~~ 154 (167)
T PF04101_consen 126 ESELNPEELAEAIEELLS-DPEKLKEMAKA 154 (167)
T ss_dssp CCC-SCCCHHHHHHCHCC-CHH-SHHHCCC
T ss_pred cccCCHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 57889999999998 88766655544
No 145
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=0.003 Score=59.75 Aligned_cols=268 Identities=13% Similarity=0.034 Sum_probs=137.5
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
+|||+++.++. - |=-....-+...|++..++.++.+++.... ..+..... .++ .++....+++.
T Consensus 1 ~~kIliir~~~--i-GD~vlt~p~~~~lk~~~P~a~i~~~~~~~~---~~i~~~~p---~I~-----~vi~~~~~~~~-- 64 (334)
T COG0859 1 MMKILVIRLSK--L-GDVVLTLPLLRTLKKAYPNAKIDVLVPKGF---APILKLNP---EID-----KVIIIDKKKKG-- 64 (334)
T ss_pred CceEEEEeccc--h-hHHHhHHHHHHHHHHHCCCCEEEEEeccch---HHHHhcCh---Hhh-----hhccccccccc--
Confidence 48999998763 2 566677788899999999999988886531 22222111 010 11111111111
Q ss_pred ccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEeeCCcchhhhhhcccccccccCCCcc
Q 012436 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~ 193 (464)
..+.....+.+.+++.++|++++..+..-...+....++|...-..+..
T Consensus 65 ----------~~~~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~g~~~~~--------------------- 113 (334)
T COG0859 65 ----------LGLKERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRIGFDKKS--------------------- 113 (334)
T ss_pred ----------cchHHHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCccccccccc---------------------
Confidence 1134456677778899999999766644333344455666544322100
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEe-cCCCCCCCCccC---CCCCCC--
Q 012436 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRV-YPPCDTSGLQVL---PLERST-- 267 (464)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i-~~~~d~~~~~~~---~~~~~~-- 267 (464)
.... +......+ .-....+...+.+...... ...... ....+....... ......
T Consensus 114 ---------~r~~-------~~~~~~~~--~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (334)
T COG0859 114 ---------AREL-------LLNKFYPR--LDKPEGQHVVERYLALLED-LGLYPPPEPQLDFPLPRPPIELAKNLAKFD 174 (334)
T ss_pred ---------chhH-------HHHHhhhc--cCcccchhHHHHHHHHHHH-hcCCCCCCCccCcccccCHHHHHHHHHhcC
Confidence 0000 00111111 1111122333333322211 000000 011011100000 000011
Q ss_pred CCcEEEEEe-ccCCCCCh--HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 012436 268 EYPAIISVA-QFRPEKAH--PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (464)
Q Consensus 268 ~~~~i~~~G-~~~~~K~~--~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 344 (464)
.+.+++..| +....|.. +...+.++.+.++ ..++++.|+.. +. +..+++.+.++ ..+.+.|..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~------~~~Vvl~g~~~---e~---e~~~~i~~~~~--~~~~l~~k~ 240 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAK------GYQVVLFGGPD---EE---ERAEEIAKGLP--NAVILAGKT 240 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHC------CCEEEEecChH---HH---HHHHHHHHhcC--CccccCCCC
Confidence 245566666 44466654 4566666666554 57889999762 21 34444444432 223388999
Q ss_pred ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 345 ~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
+-.|+..+++.||++|.+ ++. .+-=|.|.|+|+|+--
T Consensus 241 sL~e~~~li~~a~l~I~~---DSg--~~HlAaA~~~P~I~iy 277 (334)
T COG0859 241 SLEELAALIAGADLVIGN---DSG--PMHLAAALGTPTIALY 277 (334)
T ss_pred CHHHHHHHHhcCCEEEcc---CCh--HHHHHHHcCCCEEEEE
Confidence 999999999999999966 222 3445889999999854
No 146
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.62 E-value=0.031 Score=52.58 Aligned_cols=134 Identities=13% Similarity=0.018 Sum_probs=77.7
Q ss_pred CCcEEEEEeccCCCCCh--HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 268 EYPAIISVAQFRPEKAH--PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~--~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
++.+++..|.-.+.|.. +...+.++.+.++ +.++++.|+++.+ .+..++..+.. + +..+.|..+
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~------~~~~vl~~g~~~e-----~~~~~~i~~~~--~-~~~l~g~~s 244 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLAR------GLQIVLPWGNDAE-----KQRAERIAEAL--P-GAVVLPKMS 244 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHC------CCeEEEeCCCHHH-----HHHHHHHHhhC--C-CCeecCCCC
Confidence 44566777765566654 5667777776542 5778887554321 12233333332 2 346678888
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCcccee----ecC-CHHHHHHHHHHH
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGF----LAQ-NAEEYADAIVKI 420 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~----~~~-~~~~la~~i~~l 420 (464)
-.|+..+++.||++|.+ ++. .+-=|.|.|+|+|+--.+..... ..+.......+ +.. +++++.+++.++
T Consensus 245 L~el~ali~~a~l~I~~---DSg--p~HlAaa~g~P~i~lfg~t~p~~-~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~ 318 (319)
T TIGR02193 245 LAEVAALLAGADAVVGV---DTG--LTHLAAALDKPTVTLYGATDPGR-TGGYGKPNVALLGESGANPTPDEVLAALEEL 318 (319)
T ss_pred HHHHHHHHHcCCEEEeC---CCh--HHHHHHHcCCCEEEEECCCCHhh-cccCCCCceEEccCccCCCCHHHHHHHHHhh
Confidence 89999999999999966 332 34447788999998532222111 11100011111 112 788888888765
Q ss_pred H
Q 012436 421 I 421 (464)
Q Consensus 421 ~ 421 (464)
+
T Consensus 319 ~ 319 (319)
T TIGR02193 319 L 319 (319)
T ss_pred C
Confidence 3
No 147
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.011 Score=60.63 Aligned_cols=205 Identities=15% Similarity=0.123 Sum_probs=132.0
Q ss_pred CCeEEecCCCCCCCCccCCCCC------------CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEc
Q 012436 244 DRIKRVYPPCDTSGLQVLPLER------------STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVG 311 (464)
Q Consensus 244 ~~i~~i~~~~d~~~~~~~~~~~------------~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G 311 (464)
..+..+|-|+|...+....... ..++..++-+-++...||...=+.++.++..++....+.+.++.+.
T Consensus 239 ~~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~ 318 (732)
T KOG1050|consen 239 VSVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPFKGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIE 318 (732)
T ss_pred eeeeecccccchHHhhccccchhHHHHHHHHhhhccCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEe
Confidence 3445567777776655322111 1366788888899999999888899999888876555567777777
Q ss_pred CCCCCccHH---HHHHHHHHHH----hcCC---CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhC--
Q 012436 312 SCRNKSDEE---RLQSLKDKSI----ELKV---DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAG-- 379 (464)
Q Consensus 312 ~~~~~~~~~---~~~~l~~~~~----~~~l---~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G-- 379 (464)
.+...+..+ ....+....+ +++- .+-+.+...++..++.+++..+|+.+..++.+|..++.+|+..|.
T Consensus 319 ~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~ 398 (732)
T KOG1050|consen 319 NPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQEN 398 (732)
T ss_pred cCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcc
Confidence 655443332 1222222222 1221 123446678899999999999999999999999999999999883
Q ss_pred --CcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 012436 380 --AIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKA 453 (464)
Q Consensus 380 --~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 453 (464)
.+.|.+...|. .+..++ ..-.+.+ +.++++.+|..+++|..++++..-......+...+....+..+.+
T Consensus 399 ~~~~lVlsef~G~-~~tl~d----~aivvnpw~~~~~~~~i~~al~~s~~e~~~r~~~~~~~v~~~~~~~W~~~~~~ 470 (732)
T KOG1050|consen 399 KKSVLVLSEFIGD-DTTLED----AAIVVNPWDGDEFAILISKALTMSDEERELREPKHYKYVSTHDVVYWAKSFLQ 470 (732)
T ss_pred cCCceEEeeeccc-cccccc----cCEEECCcchHHHHHHHHHHhhcCHHHHhhcchhhhhhhcchhHHHHHHHHHH
Confidence 56777766555 333322 1222334 899999999999995555554444444444334444444444444
No 148
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.015 Score=50.78 Aligned_cols=152 Identities=12% Similarity=0.002 Sum_probs=82.5
Q ss_pred hcCCEEEEcCHHHHHHHHHHhCCCCCeEEe---cCCCCCCCCcc----C-CCCCCCCCcEEEEEeccCCCCCh--HH---
Q 012436 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRV---YPPCDTSGLQV----L-PLERSTEYPAIISVAQFRPEKAH--PL--- 286 (464)
Q Consensus 220 ~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i---~~~~d~~~~~~----~-~~~~~~~~~~i~~~G~~~~~K~~--~~--- 286 (464)
+..|.||++-....+..... ..++..+ ++.+....... . .......+++-+++|.-.+.-.+ +.
T Consensus 108 ~~fDlvivp~HD~~~~~s~~---~~Nilpi~Gs~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q 184 (329)
T COG3660 108 NHFDLVIVPYHDWREELSDQ---GPNILPINGSPHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQ 184 (329)
T ss_pred ccceEEeccchhhhhhhhcc---CCceeeccCCCCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHH
Confidence 55688888766666553222 2333222 23332222110 0 11123556788999976655443 22
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHh-cCCCCcEEEccCC-ChhHHHHHHhcCcEEEEcCC
Q 012436 287 QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIE-LKVDGNVEFYKNL-LYRDLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 287 ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~-~~~~~~~~l~~ad~~v~ps~ 364 (464)
+..++.+..++ ....+++--+.... +.++...+. +.-..-+.+-+.- ...-...+|+.||.+|.+..
T Consensus 185 ~~~~l~k~l~~-----~g~~~lisfSRRTp------~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaD 253 (329)
T COG3660 185 FASLLVKILEN-----QGGSFLISFSRRTP------DTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTAD 253 (329)
T ss_pred HHHHHHHHHHh-----CCceEEEEeecCCc------HHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecc
Confidence 33333333332 25667766655433 556666654 4333445554431 33457788999999997732
Q ss_pred CCCCChHHHHHHHhCCcEEEeCCC
Q 012436 365 DEHFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 365 ~e~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
.-....||.+.|+||-+....
T Consensus 254 ---SinM~sEAasTgkPv~~~~~~ 274 (329)
T COG3660 254 ---SINMCSEAASTGKPVFILEPP 274 (329)
T ss_pred ---hhhhhHHHhccCCCeEEEecC
Confidence 223468999999999886543
No 149
>PLN02210 UDP-glucosyl transferase
Probab=97.58 E-value=0.094 Score=51.77 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=51.6
Q ss_pred CcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCcc---ceecccCCccceeec-----
Q 012436 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKM---DIVLEEDGQQTGFLA----- 407 (464)
Q Consensus 336 ~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~----- 407 (464)
++..+.+++|+.+ +|+.+.+..+- ++-|+ ++++||+.+|+|+|+-...+--. ..+.+. -+.|...
T Consensus 324 ~~g~v~~w~PQ~~---iL~h~~vg~Fi-tH~G~-nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~--~g~G~~l~~~~~ 396 (456)
T PLN02210 324 GQGVVLEWSPQEK---ILSHMAISCFV-THCGW-NSTIETVVAGVPVVAYPSWTDQPIDARLLVDV--FGIGVRMRNDAV 396 (456)
T ss_pred CCeEEEecCCHHH---HhcCcCcCeEE-eeCCc-ccHHHHHHcCCCEEecccccccHHHHHHHHHH--hCeEEEEecccc
Confidence 3445679998876 57777633322 22333 48999999999999976543211 111110 2455433
Q ss_pred --C-CHHHHHHHHHHHHcCCH
Q 012436 408 --Q-NAEEYADAIVKIISMPE 425 (464)
Q Consensus 408 --~-~~~~la~~i~~l~~~~~ 425 (464)
. +.+++++++++++. ++
T Consensus 397 ~~~~~~~~l~~av~~~m~-~~ 416 (456)
T PLN02210 397 DGELKVEEVERCIEAVTE-GP 416 (456)
T ss_pred CCcCCHHHHHHHHHHHhc-Cc
Confidence 1 78899999999997 64
No 150
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.58 E-value=0.022 Score=54.42 Aligned_cols=103 Identities=9% Similarity=-0.037 Sum_probs=66.0
Q ss_pred CcEEEEEeccCCCCC--hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 269 YPAIISVAQFRPEKA--HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~--~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
+.+++..|.-.+.|. .+...+.++.+.+. +.+++++|+..+. +. +..++..+.......+.+.|..+-
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~------~~~vvl~ggp~e~-e~---~~~~~i~~~~~~~~~~~l~g~~sL 253 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQAR------GYEVVLTSGPDKD-DL---ACVNEIAQGCQTPPVTALAGKTTF 253 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHC------CCeEEEEcCCChH-HH---HHHHHHHHhcCCCccccccCCCCH
Confidence 456667776555564 45666666766542 6788888764322 11 122333332222334667898888
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
.|+..+++.||++|.. ++. .+-=|.|.|+|+|+--
T Consensus 254 ~el~ali~~a~l~v~n---DSG--p~HlAaA~g~P~v~lf 288 (352)
T PRK10422 254 PELGALIDHAQLFIGV---DSA--PAHIAAAVNTPLICLF 288 (352)
T ss_pred HHHHHHHHhCCEEEec---CCH--HHHHHHHcCCCEEEEE
Confidence 9999999999999965 332 3445778999999853
No 151
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=97.54 E-value=0.073 Score=49.51 Aligned_cols=155 Identities=17% Similarity=0.112 Sum_probs=88.0
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccC---CCCChHHHHH
Q 012436 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFR---PEKAHPLQLE 289 (464)
Q Consensus 213 ~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~---~~K~~~~ll~ 289 (464)
++.+.+++.+|.+.+=.+...+.+++. |. ++.+.+.++-.-.....+.....++..+++.-+-. ..+..+.+.+
T Consensus 119 ~~~~~~l~~~~~i~vRD~~S~~~l~~~-g~--~i~~~~D~a~~l~~~~~~~~~~~~~~~i~i~~r~~~~~~~~~~~~l~~ 195 (298)
T TIGR03609 119 WLVRRVLRGCRAISVRDAASYRLLKRL-GI--PAELAADPVWLLPPEPWPGGEPLPEPVIVVSLRPWPLLDVSRLLRLLR 195 (298)
T ss_pred HHHHHHHccCCEEEEeCHHHHHHHHHh-CC--CceEeCChhhhCCCCcccccccCCCCeEEEEECCCCcCCHHHHHHHHH
Confidence 345677899999999888888888765 43 45555533211000000111112234454443321 1123556777
Q ss_pred HHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCC
Q 012436 290 AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFG 369 (464)
Q Consensus 290 a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~ 369 (464)
++..+.++. +.+++++..... +|.+..+++.+.. .-+..+ ....+.+|+.+++++||++|....+
T Consensus 196 ~l~~l~~~~-----g~~v~~i~~~~~-~D~~~~~~l~~~~---~~~~~i--~~~~~~~e~~~~i~~~~~vI~~RlH---- 260 (298)
T TIGR03609 196 ALDRLQRDT-----GAFVLFLPFQQP-QDLPLARALRDQL---LGPAEV--LSPLDPEELLGLFASARLVIGMRLH---- 260 (298)
T ss_pred HHHHHHHhh-----CCeEEEEeCCcc-hhHHHHHHHHHhc---CCCcEE--EecCCHHHHHHHHhhCCEEEEechH----
Confidence 777776654 566666554322 2333334444333 222333 3555778999999999988855322
Q ss_pred hHHHHHHHhCCcEEEeC
Q 012436 370 ISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 370 ~~~~Ea~a~G~PvI~~~ 386 (464)
..+=|+.+|+|+|+-.
T Consensus 261 -~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 261 -ALILAAAAGVPFVALS 276 (298)
T ss_pred -HHHHHHHcCCCEEEee
Confidence 4677999999999864
No 152
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=97.51 E-value=0.088 Score=49.58 Aligned_cols=322 Identities=13% Similarity=0.085 Sum_probs=155.7
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
||++++..+.....|-|-.+..+...|.+...+.++.+.+..+ +...+ +++.-.........
T Consensus 1 m~~~L~g~~g~gN~Gdeail~all~~l~~~~~~~~~~~~~~~p----~~i~~--------------p~~~~~~p~~~~~~ 62 (385)
T COG2327 1 MKALLLGYYGFGNIGDEAILKALLDMLRRLNPDAKVLVMGRRP----PVIVD--------------PVFLSANPEGSAAG 62 (385)
T ss_pred CeeEEEeeecCCCcccHHHHHHHHHHHHhhCcccceeeeecCC----ccccc--------------ceeecCCcccCchh
Confidence 5666665544444689999999999999999999988887653 11111 11100000000000
Q ss_pred cCcceehhhhchhhhHH---HHHHhhh-cCCcEEEeccc--------cccc------chhhhccCceEEEEeeCCcchhh
Q 012436 115 TYPRFTMIGQSFGSVYL---SWEALCK-FTPLYYFDTSG--------YAFT------YPLARIFGCRVICYTHYPTISLD 176 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~---~~~~l~~-~~~Dvv~~~~~--------~~~~------~~~~~~~~~p~v~~~h~p~~~~~ 176 (464)
.+++ ..+..+...+ ....+.. .+.|+++...+ .... +.++++.++|++++-|+-.
T Consensus 63 l~g~---~k~v~R~~~k~~~~~~il~~l~~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp~~~~g~svG---- 135 (385)
T COG2327 63 LNGR---VKSVLRRRLKHPGLVSILSALGKADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQSVG---- 135 (385)
T ss_pred hhHH---HHHHHHHhhccccHHHHHHHhhhCCEEEEcCcccccCccccceehhhHHHHHHHHHcCCCEEEEeccCC----
Confidence 0110 0111111111 0111222 26787763211 1111 1256688999999888311
Q ss_pred hhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEec-CCCCC
Q 012436 177 MISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVY-PPCDT 255 (464)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~-~~~d~ 255 (464)
+. ..+..+++....++.+..+++=.+...++++.. |.+... .. +....
T Consensus 136 ---------------------P~-------~~~~s~~~~~~~~~~~s~i~vRD~~S~~llk~~-gi~a~l--~~D~Af~L 184 (385)
T COG2327 136 ---------------------PL-------KHPLSRQLLNYVLGGCSAISVRDPVSYELLKQL-GINARL--VTDPAFLL 184 (385)
T ss_pred ---------------------Cc-------cCHHHHHHHHHHhcCCcEEEEecHHhHHHHHHc-CCCeEe--ecCcceec
Confidence 00 112233455667789999999899999999854 442222 22 11111
Q ss_pred CCCcc-CCC--CCCCCCcEEEEEeccCCCCChHH-----HHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHH
Q 012436 256 SGLQV-LPL--ERSTEYPAIISVAQFRPEKAHPL-----QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKD 327 (464)
Q Consensus 256 ~~~~~-~~~--~~~~~~~~i~~~G~~~~~K~~~~-----ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~ 327 (464)
+...+ ... .....+...+..-.+.+.+..+. +-+++..+..... ..+++...-.+. .++....+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~lr~~~~~~t~~~~~~~~v~~~l~~~~~~~~---~~~~i~~~~~~~-s~d~~va~~--- 257 (385)
T COG2327 185 PASSQNATASDVEAREKTVAITLRGLHPDNTAQRSILKYVNEALDLVERQVK---ALWRITLIDYGA-SDDLAVADA--- 257 (385)
T ss_pred ccccccccccccccccceEEEEecccCCchhhhHHHHHHHHHHHHHHHHhhh---cceEEEeeeccc-cchhHHHHH---
Confidence 11010 011 11122233333333333322221 2233333211111 123332222221 223233333
Q ss_pred HHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeec
Q 012436 328 KSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLA 407 (464)
Q Consensus 328 ~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~ 407 (464)
.+....-.+++.+..-...+++...++++|+.|-.-. -+++=|++.|+|+|+-....-...+.++. +.-++..
T Consensus 258 ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-----HsaI~al~~g~p~i~i~Y~~K~~~l~~~~--gl~~~~~ 330 (385)
T COG2327 258 IAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRL-----HSAIMALAFGVPAIAIAYDPKVRGLMQDL--GLPGFAI 330 (385)
T ss_pred HHhhcCCccceEeecchHHHHHHHHhccCceEEeehh-----HHHHHHHhcCCCeEEEeecHHHHHHHHHc--CCCcccc
Confidence 3333332356766544335777889999999884421 24677999999999976543322333221 2233333
Q ss_pred C----CHHHHHHHHHHHHcCCHH
Q 012436 408 Q----NAEEYADAIVKIISMPET 426 (464)
Q Consensus 408 ~----~~~~la~~i~~l~~~~~~ 426 (464)
+ +.+.+.....+.+...++
T Consensus 331 ~i~~~~~~~l~~~~~e~~~~~~~ 353 (385)
T COG2327 331 DIDPLDAEILSAVVLERLTKLDE 353 (385)
T ss_pred cCCCCchHHHHHHHHHHHhccHH
Confidence 2 788888888887772333
No 153
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=97.44 E-value=0.084 Score=49.75 Aligned_cols=97 Identities=16% Similarity=0.062 Sum_probs=60.9
Q ss_pred cEEEEEeccCCCCC--hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 270 PAIISVAQFRPEKA--HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 270 ~~i~~~G~~~~~K~--~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
..++..|.-...|. .+...+.++.+.++ +.++++.|+++++ . +..++..+. .+++.+.|..+-.
T Consensus 180 ~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~------~~~ivl~~G~~~e--~---~~~~~i~~~---~~~~~l~g~~sL~ 245 (322)
T PRK10964 180 YLVFLHATTRDDKHWPEAHWRELIGLLAPS------GLRIKLPWGAEHE--E---QRAKRLAEG---FPYVEVLPKLSLE 245 (322)
T ss_pred eEEEEeCCCcccccCCHHHHHHHHHHHHHC------CCeEEEeCCCHHH--H---HHHHHHHcc---CCcceecCCCCHH
Confidence 34344454344454 45667777776542 5677776434321 1 222333222 2357788988999
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH 385 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 385 (464)
|+..+++.||++|.. ++ ..+-=|.|+|+|+|+-
T Consensus 246 elaali~~a~l~I~n---DS--Gp~HlA~A~g~p~val 278 (322)
T PRK10964 246 QVARVLAGAKAVVSV---DT--GLSHLTAALDRPNITL 278 (322)
T ss_pred HHHHHHHhCCEEEec---CC--cHHHHHHHhCCCEEEE
Confidence 999999999999966 32 2445588999999985
No 154
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.0068 Score=61.56 Aligned_cols=140 Identities=18% Similarity=0.132 Sum_probs=101.2
Q ss_pred CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhc-CCCCCcEEEEEcCCCCC--ccHHHHHHHHHHHHhcCCCCcEEEccC
Q 012436 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLD-ADLPRPRLQFVGSCRNK--SDEERLQSLKDKSIELKVDGNVEFYKN 343 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~-~~~p~~~l~i~G~~~~~--~~~~~~~~l~~~~~~~~l~~~v~~~g~ 343 (464)
++..+++++-|+..+|.....+.-...+..... +.-|.+.+++.|..... ........+...++..+...+|.|+..
T Consensus 485 p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~n 564 (750)
T COG0058 485 PNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPN 564 (750)
T ss_pred CCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCC
Confidence 356789999999999988776666665555443 23356777777864322 122334445555555444457999998
Q ss_pred CChhHHHHHHhcCcEEEEcC--CCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC
Q 012436 344 LLYRDLVKLLGGAVVGIHSM--IDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ 408 (464)
Q Consensus 344 ~~~~~~~~~l~~ad~~v~ps--~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~ 408 (464)
.+-.-...++.+||+-...| ..|..|++-+-++..|.+.|+|--|.. -|+.+. .++.|||++.
T Consensus 565 YdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGan-vEi~e~-vg~~N~~~fG 629 (750)
T COG0058 565 YDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGAN-VEIYEH-VGGENGWIFG 629 (750)
T ss_pred CChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHH-HHHHHh-cCCCceEEeC
Confidence 87777888899999988776 489999999999999999999987766 577651 2279999997
No 155
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.26 E-value=0.03 Score=53.34 Aligned_cols=101 Identities=10% Similarity=0.003 Sum_probs=63.3
Q ss_pred cEEEEEeccCCCCC--hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 270 PAIISVAQFRPEKA--HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 270 ~~i~~~G~~~~~K~--~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
.+++..|.-.+.|. .+...+.++.+..+ +..++++|+..+. +.+..+++ .+..+-+..+.+.|..+-.
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~------~~~ivl~g~p~~~-e~~~~~~i---~~~~~~~~~~~l~g~~sL~ 252 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHAR------GYEVVLTSGPDKD-ELAMVNEI---AQGCQTPRVTSLAGKLTLP 252 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhC------CCeEEEecCCCHH-HHHHHHHH---HhhCCCCcccccCCCCCHH
Confidence 45556665445453 45666666666542 6788999864321 11122233 2222222235678988889
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH 385 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 385 (464)
|+..+++.||++|.. ++ ..+-=|.|.|+|+|+-
T Consensus 253 el~ali~~a~l~Vs~---DS--Gp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 253 QLAALIDHARLFIGV---DS--VPMHMAAALGTPLVAL 285 (344)
T ss_pred HHHHHHHhCCEEEec---CC--HHHHHHHHcCCCEEEE
Confidence 999999999999966 33 2445588999999985
No 156
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.24 E-value=0.091 Score=49.79 Aligned_cols=99 Identities=12% Similarity=0.014 Sum_probs=63.2
Q ss_pred CcEEEEEecc-CCCCC--hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 269 YPAIISVAQF-RPEKA--HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 269 ~~~i~~~G~~-~~~K~--~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
+.+++..|.- .+.|. .+...+.++.+.+. +.++++.|+..+. +..+++. +..+ ...+.+.|..+
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~------~~~ivl~G~~~e~---~~~~~i~---~~~~-~~~~~l~g~~s 241 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ------GYQVVLFGSAKDH---PAGNEIE---ALLP-GELRNLAGETS 241 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC------CCEEEEEEChhhH---HHHHHHH---HhCC-cccccCCCCCC
Confidence 3455666653 35554 45666777666542 5788999876432 2223332 2221 12344778888
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH 385 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 385 (464)
-.|+..+++.||++|.. ++. .+-=|.|.|+|+|+-
T Consensus 242 L~el~ali~~a~l~I~~---DSG--p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 242 LDEAVDLIALAKAVVTN---DSG--LMHVAAALNRPLVAL 276 (334)
T ss_pred HHHHHHHHHhCCEEEee---CCH--HHHHHHHcCCCEEEE
Confidence 89999999999999966 322 344578999999984
No 157
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=97.19 E-value=0.0033 Score=53.67 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=72.7
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
+...+|-.. -|--..+..|++.|.+...++.+++-+... ...+ .....+.. .+.+.+++.
T Consensus 22 ~~iWiHa~S---vGE~~a~~~Li~~l~~~~p~~~illT~~T~--tg~~---~~~~~~~~----~v~~~~~P~-------- 81 (186)
T PF04413_consen 22 PLIWIHAAS---VGEVNAARPLIKRLRKQRPDLRILLTTTTP--TGRE---MARKLLPD----RVDVQYLPL-------- 81 (186)
T ss_dssp T-EEEE-SS---HHHHHHHHHHHHHHTT---TS-EEEEES-C--CHHH---HHHGG-GG----G-SEEE-----------
T ss_pred CcEEEEECC---HHHHHHHHHHHHHHHHhCCCCeEEEEecCC--chHH---HHHHhCCC----CeEEEEeCc--------
Confidence 555555322 267788899999999986677776665432 1111 12211111 112222222
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEE--ecccccccchhhhccCceEEEEeeCCcchhhhhhcccccccccCCCcc
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYF--DTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~--~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~ 193 (464)
.......+.++..+||+++ .+..++..+..++..|+|+++-.-
T Consensus 82 -----------D~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa------------------------ 126 (186)
T PF04413_consen 82 -----------DFPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA------------------------ 126 (186)
T ss_dssp -----------SSHHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE------------------------
T ss_pred -----------cCHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee------------------------
Confidence 1133445668888999776 344555555567788999987433
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecC
Q 012436 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYP 251 (464)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~ 251 (464)
..+..+...++.+.++.+.+++..|.|.+.|+..++.+.+.+..++++.+..|
T Consensus 127 -----rls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~~lG~~~~~v~v~Gn 179 (186)
T PF04413_consen 127 -----RLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFRKLGAPPERVHVTGN 179 (186)
T ss_dssp -------------------HHHHHHGGG-SEEEESSHHHHHHHHTTT-S--SEEE---
T ss_pred -----eeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcceEEEeCc
Confidence 01111112233345567888899999999999999999998655678887765
No 158
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.13 E-value=0.058 Score=51.48 Aligned_cols=100 Identities=11% Similarity=-0.006 Sum_probs=62.4
Q ss_pred CcEEEEEecc-CCCCC--hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC---CcEEEcc
Q 012436 269 YPAIISVAQF-RPEKA--HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD---GNVEFYK 342 (464)
Q Consensus 269 ~~~i~~~G~~-~~~K~--~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~---~~v~~~g 342 (464)
+.+.+..|.- .+.|. .+.+.+.++.+.. .++++++.|+..+. +..++..+..+-. ..+.+.|
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~------~~~~vvl~Gg~~e~------~~~~~i~~~~~~~~~~~~~~l~g 248 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLID------EGYQVVLFGSAKDH------EAGNEILAALNTEQQAWCRNLAG 248 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHH------CCCeEEEEeCHHhH------HHHHHHHHhcccccccceeeccC
Confidence 3455666653 34554 3556666666653 26788999875432 2223333322211 1256678
Q ss_pred CCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe
Q 012436 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH 385 (464)
Q Consensus 343 ~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 385 (464)
..+-.++..+++.||++|.. ++. .+-=|.|.|+|+|+-
T Consensus 249 ~~sL~el~ali~~a~l~I~n---DTG--p~HlAaA~g~P~val 286 (348)
T PRK10916 249 ETQLEQAVILIAACKAIVTN---DSG--LMHVAAALNRPLVAL 286 (348)
T ss_pred CCCHHHHHHHHHhCCEEEec---CCh--HHHHHHHhCCCEEEE
Confidence 88889999999999999965 322 344588999999974
No 159
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=97.12 E-value=0.094 Score=48.49 Aligned_cols=256 Identities=14% Similarity=0.106 Sum_probs=146.5
Q ss_pred CCcEEEecccccc--cchhhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHH
Q 012436 140 TPLYYFDTSGYAF--TYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGL 217 (464)
Q Consensus 140 ~~Dvv~~~~~~~~--~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (464)
+.||+|..+.... .....+.+|.++|.++.+.....++-..+.++.... -.
T Consensus 73 ~lDVlIEmg~ql~~~~~~~~~~~G~KvV~y~~GndYv~~~E~~lF~k~~~~---------------------------~f 125 (364)
T PF10933_consen 73 ELDVLIEMGAQLDPEWLDYMRARGGKVVSYRCGNDYVMDIESMLFNKPSGH---------------------------LF 125 (364)
T ss_pred cCCEEEEccCccCHHHHHHHHHcCCeEEEEeCCchHHHHhhHHhcCCCCCc---------------------------cC
Confidence 7899996544222 112555899999999996665444444433222100 00
Q ss_pred HhhcCCEEEEcCHHH---HHHHHHHhCCCCCeEEecCCCCCCCCccC----C-------CCCCCCCcEEE-EEeccCCCC
Q 012436 218 VGSCADLAMVNSSWT---QSHIEKLWGIPDRIKRVYPPCDTSGLQVL----P-------LERSTEYPAII-SVAQFRPEK 282 (464)
Q Consensus 218 ~~~~ad~vi~~S~~~---~~~~~~~~~~~~~i~~i~~~~d~~~~~~~----~-------~~~~~~~~~i~-~~G~~~~~K 282 (464)
.-...|.|.+.-+.. +.+++-.. ..++.++|.--++-.++.. + ..+.....++. |=-++.-.|
T Consensus 126 ~~~~yD~VW~lPq~~~~~~~yl~~l~--r~Pv~~vP~iWsP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vvK 203 (364)
T PF10933_consen 126 NGAPYDEVWTLPQFENTCAPYLETLH--RCPVRVVPHIWSPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISVVK 203 (364)
T ss_pred CCCCCceeEeccchhhhchHHHHHHh--cCCceeeCccCCchhHHHHHHhhhhcCCccccccCCCCceEEEecCCceEEe
Confidence 115667777665533 34455444 4566677765544333211 0 11112223332 223344445
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCC-CCCccHHHHHHHHHHHHhcCC--CCcEEEccCCChhHHHHHHhc-CcE
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSC-RNKSDEERLQSLKDKSIELKV--DGNVEFYKNLLYRDLVKLLGG-AVV 358 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~-~~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~~~~~~~~l~~-ad~ 358 (464)
..-.=+-+.+++-...++ .+..+.+.+. ..++. .++...+..+.+ .....|.|+. ++..++++ .|+
T Consensus 204 ~~~~PmLi~E~aYR~~P~---~v~~~~V~Nt~~~ke~----~~F~~f~~~ldlvr~gkasfegR~---~~p~fla~~tD~ 273 (364)
T PF10933_consen 204 TCFIPMLICEEAYRADPD---AVEHVYVTNTYHLKEH----PTFVNFANSLDLVRDGKASFEGRF---DFPDFLAQHTDA 273 (364)
T ss_pred ecCccHHHHHHHHHhChh---hcceEEEecchhhhcC----HHHHHHHHhhHHhhcCeeEEeeec---ChHHHHHhCCCE
Confidence 533223333333333321 3455555543 22222 445555555544 3567888887 55555654 699
Q ss_pred EEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012436 359 GIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEMAAAAR 436 (464)
Q Consensus 359 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~ 436 (464)
+|.--|.-+.....+|++--|=|.|-.. .++ ++.|+.++ |..+=++++.+++...+...+...++++
T Consensus 274 VvSHqWeN~lNYlY~daLyggYPLVHNS------~~l-----~d~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~ 342 (364)
T PF10933_consen 274 VVSHQWENPLNYLYYDALYGGYPLVHNS------PLL-----KDVGYYYPDFDAFEGARQLLRAIREHDADLDAYRARAR 342 (364)
T ss_pred EEeccccchhhHHHHHHHhcCCCcccCc------chh-----cccCcCCCCccHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 9887777788888899999999988743 122 35888887 8888888888877646667788888888
Q ss_pred HHHHccCHH
Q 012436 437 RRAARFSEQ 445 (464)
Q Consensus 437 ~~~~~~s~~ 445 (464)
+.+..++..
T Consensus 343 ~~l~~~~p~ 351 (364)
T PF10933_consen 343 RLLDRLSPE 351 (364)
T ss_pred HHHHhhCCC
Confidence 887655544
No 160
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.05 E-value=0.027 Score=52.28 Aligned_cols=150 Identities=13% Similarity=-0.020 Sum_probs=89.4
Q ss_pred hcCCEEEEcCHHHHHHHHHHhCCCCCeEEe---cCCCCCCCCccC------CCCCCCCCcEEEEEeccCCCC--ChH---
Q 012436 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRV---YPPCDTSGLQVL------PLERSTEYPAIISVAQFRPEK--AHP--- 285 (464)
Q Consensus 220 ~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i---~~~~d~~~~~~~------~~~~~~~~~~i~~~G~~~~~K--~~~--- 285 (464)
+..|.+|++... ......++... +|.++.+..... .....+.+...+.+|.-+... +.+
T Consensus 96 ~~FDlvi~p~HD-------~~~~~~Nvl~t~ga~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~ 168 (311)
T PF06258_consen 96 RPFDLVIVPEHD-------RLPRGPNVLPTLGAPNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAE 168 (311)
T ss_pred cccCEEEECccc-------CcCCCCceEecccCCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHH
Confidence 677999998765 11113444322 344444433211 011123445666777543332 333
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCC
Q 012436 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID 365 (464)
Q Consensus 286 ~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~ 365 (464)
.+++.+..+.+.. ...+.|..+.... .+..+.|++..+ -.+.+.+...-+..-+..+|+.||.++.+.
T Consensus 169 ~l~~~l~~~~~~~-----~~~~~vttSRRTp--~~~~~~L~~~~~---~~~~~~~~~~~~~nPy~~~La~ad~i~VT~-- 236 (311)
T PF06258_consen 169 RLLDQLAALAAAY-----GGSLLVTTSRRTP--PEAEAALRELLK---DNPGVYIWDGTGENPYLGFLAAADAIVVTE-- 236 (311)
T ss_pred HHHHHHHHHHHhC-----CCeEEEEcCCCCc--HHHHHHHHHhhc---CCCceEEecCCCCCcHHHHHHhCCEEEEcC--
Confidence 5666666666664 5789998876543 233344444443 234664555555667889999999998872
Q ss_pred CCCChHHHHHHHhCCcEEEeCCCC
Q 012436 366 EHFGISVVEYMAAGAIPIAHNSAG 389 (464)
Q Consensus 366 e~~~~~~~Ea~a~G~PvI~~~~~~ 389 (464)
..-..+.||.+.|+||.+....+
T Consensus 237 -DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 237 -DSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred -ccHHHHHHHHHcCCCEEEecCCC
Confidence 22335799999999999988765
No 161
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.94 E-value=0.0027 Score=63.92 Aligned_cols=133 Identities=20% Similarity=0.153 Sum_probs=73.7
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++.+++.+|++.. ...+..++++....++. |. +++..-.+... ..+ ++|+.+..++|+.
T Consensus 276 ~~vv~vsfGs~~~-~~~~~~~~~~~~~~~~~----~~-~~iW~~~~~~~------~~l---------~~n~~~~~W~PQ~ 334 (500)
T PF00201_consen 276 KGVVYVSFGSIVS-SMPEEKLKEIAEAFENL----PQ-RFIWKYEGEPP------ENL---------PKNVLIVKWLPQN 334 (500)
T ss_dssp TEEEEEE-TSSST-T-HHHHHHHHHHHHHCS----TT-EEEEEETCSHG------CHH---------HTTEEEESS--HH
T ss_pred CCEEEEecCcccc-hhHHHHHHHHHHHHhhC----CC-ccccccccccc------ccc---------cceEEEeccccch
Confidence 4466777787643 23444444444444443 34 66665544211 111 4689999999886
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCcc---ceecccCCccceeecC----CHHHHHHHHHHH
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ----NAEEYADAIVKI 420 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~----~~~~la~~i~~l 420 (464)
++ |+...+-++-+ -|.-.++.||+.+|+|+|+-+.-+.-. ..+.+ .+.|...+ +.+++.++|.++
T Consensus 335 ~l---L~hp~v~~fit--HgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~---~G~g~~l~~~~~~~~~l~~ai~~v 406 (500)
T PF00201_consen 335 DL---LAHPRVKLFIT--HGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEE---KGVGVVLDKNDLTEEELRAAIREV 406 (500)
T ss_dssp HH---HTSTTEEEEEE--S--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH---TTSEEEEGGGC-SHHHHHHHHHHH
T ss_pred hh---hhcccceeeee--ccccchhhhhhhccCCccCCCCcccCCccceEEEE---EeeEEEEEecCCcHHHHHHHHHHH
Confidence 55 66554432221 244568999999999999977543211 11223 34555443 889999999999
Q ss_pred HcCCHHHHHH
Q 012436 421 ISMPETERLE 430 (464)
Q Consensus 421 ~~~~~~~~~~ 430 (464)
++ |+..++.
T Consensus 407 l~-~~~y~~~ 415 (500)
T PF00201_consen 407 LE-NPSYKEN 415 (500)
T ss_dssp HH-SHHHHHH
T ss_pred Hh-hhHHHHH
Confidence 99 8754433
No 162
>PLN02562 UDP-glycosyltransferase
Probab=96.90 E-value=0.039 Score=54.30 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=57.1
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCccceeecC--C
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQTGFLAQ--N 409 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~~g~~~~--~ 409 (464)
++|+.+.+++|+.++ |+..++..+- ++-| -.+++||+.+|+|+|+-...+-- ...+.+. -+.|+-.. +
T Consensus 327 ~~~~~v~~w~PQ~~i---L~h~~v~~fv-tH~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~--~g~g~~~~~~~ 399 (448)
T PLN02562 327 SKQGKVVSWAPQLEV---LKHQAVGCYL-THCG-WNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDV--WKIGVRISGFG 399 (448)
T ss_pred ccCEEEEecCCHHHH---hCCCccceEE-ecCc-chhHHHHHHcCCCEEeCCcccchHHHHHHHHHH--hCceeEeCCCC
Confidence 467888899988775 5555543332 2233 45899999999999997644321 1112210 24454443 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHH
Q 012436 410 AEEYADAIVKIISMPETERLE 430 (464)
Q Consensus 410 ~~~la~~i~~l~~~~~~~~~~ 430 (464)
.++++++|++++. +++.+++
T Consensus 400 ~~~l~~~v~~~l~-~~~~r~~ 419 (448)
T PLN02562 400 QKEVEEGLRKVME-DSGMGER 419 (448)
T ss_pred HHHHHHHHHHHhC-CHHHHHH
Confidence 8999999999998 8654443
No 163
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=96.90 E-value=0.041 Score=54.09 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=57.7
Q ss_pred CCcEEEccCCChhHHHHHHhcCcE--EEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCccceeecC-
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVV--GIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQTGFLAQ- 408 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~~g~~~~- 408 (464)
.+|..+.+++|+.++ ++..++ ||. +-| -++++||+++|+|+|+-...+.- ...+.+. -+.|+..+
T Consensus 323 ~~~g~v~~w~PQ~~i---L~h~~v~~fvt---H~G-~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~--~~~G~~~~~ 393 (451)
T PLN02410 323 SGRGYIVKWAPQKEV---LSHPAVGGFWS---HCG-WNSTLESIGEGVPMICKPFSSDQKVNARYLECV--WKIGIQVEG 393 (451)
T ss_pred cCCeEEEccCCHHHH---hCCCccCeeee---cCc-hhHHHHHHHcCCCEEeccccccCHHHHHHHHHH--hCeeEEeCC
Confidence 457778899988875 666444 552 233 34899999999999997644321 1112220 14565542
Q ss_pred --CHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012436 409 --NAEEYADAIVKIISMPETERLEMAAAAR 436 (464)
Q Consensus 409 --~~~~la~~i~~l~~~~~~~~~~~~~~~~ 436 (464)
+.++++++|++++. +++ .+++.++++
T Consensus 394 ~~~~~~v~~av~~lm~-~~~-~~~~r~~a~ 421 (451)
T PLN02410 394 DLDRGAVERAVKRLMV-EEE-GEEMRKRAI 421 (451)
T ss_pred cccHHHHHHHHHHHHc-CCc-HHHHHHHHH
Confidence 88999999999997 753 233444443
No 164
>PLN02670 transferase, transferring glycosyl groups
Probab=96.86 E-value=0.026 Score=55.71 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=70.2
Q ss_pred cEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCccceeecC-----
Q 012436 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQTGFLAQ----- 408 (464)
Q Consensus 337 ~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~~g~~~~----- 408 (464)
.+.+.+++|+.++ |+...+..+-+ .+.-++++||+++|+|+|+-...+.- ...+.. .+.|+.++
T Consensus 340 G~vv~~W~PQ~~I---L~H~~v~~Fvt--HcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~---~g~Gv~l~~~~~~ 411 (472)
T PLN02670 340 GMIHVGWVPQVKI---LSHESVGGFLT--HCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHG---KKLGLEVPRDERD 411 (472)
T ss_pred CeEEeCcCCHHHH---hcCcccceeee--cCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHH---cCeeEEeeccccC
Confidence 3777899988775 66665533322 23346899999999999997644220 112223 35554441
Q ss_pred ---CHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HH-HccCHHHHHHHHHHHHHHHH
Q 012436 409 ---NAEEYADAIVKIISMPETERLEMAAAARR---RA-ARFSEQRFYEDFKAAIRPIL 459 (464)
Q Consensus 409 ---~~~~la~~i~~l~~~~~~~~~~~~~~~~~---~~-~~~s~~~~~~~~~~~~~~~~ 459 (464)
+.+++.++|++++. +++ -.++++++++ .+ ++=..+++++.+.+.+.+..
T Consensus 412 ~~~~~e~i~~av~~vm~-~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 412 GSFTSDSVAESVRLAMV-DDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred CcCcHHHHHHHHHHHhc-Ccc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhc
Confidence 58899999999997 642 2233344433 33 55666677777777766554
No 165
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=96.80 E-value=0.017 Score=47.11 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=45.9
Q ss_pred HHHhhhcCCcEEEecccccccc--hhh-hccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHH
Q 012436 133 WEALCKFTPLYYFDTSGYAFTY--PLA-RIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYT 209 (464)
Q Consensus 133 ~~~l~~~~~Dvv~~~~~~~~~~--~~~-~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (464)
.+......+|++++++.....- ++. ...++|.++|+|.... .|--.. ...+...
T Consensus 52 ~~~~~~~~~dll~aTsmldLa~l~gL~p~l~~~p~ilYFHENQl-------------~YP~~~-----~~~rd~~----- 108 (168)
T PF12038_consen 52 QQIPLSHSYDLLFATSMLDLATLRGLRPDLANVPKILYFHENQL-------------AYPVSP-----GQERDFQ----- 108 (168)
T ss_pred hccccccCCCEEEeeccccHHHHHhhccCCCCCCEEEEEecCcc-------------cCCCCC-----Ccccccc-----
Confidence 3445566789999776544322 233 3678999999992211 010000 0000000
Q ss_pred HHHHHHHHHhhcCCEEEEcCHHHHHHHHHH
Q 012436 210 FFSWMYGLVGSCADLAMVNSSWTQSHIEKL 239 (464)
Q Consensus 210 ~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~ 239 (464)
+....-...-.||.|+.+|.+.++.+-+-
T Consensus 109 -~~~~ni~saLaAD~v~FNS~~nr~sFL~~ 137 (168)
T PF12038_consen 109 -YGMNNIYSALAADRVVFNSAFNRDSFLDG 137 (168)
T ss_pred -HHHHHHHHHHhceeeeecchhhHHHHHHH
Confidence 11112233467999999999998887553
No 166
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=96.79 E-value=0.02 Score=51.69 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=59.3
Q ss_pred CCCcEEEEEeccCCCCChH--HHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 012436 267 TEYPAIISVAQFRPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~--~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 344 (464)
+++.+++..|.-.+.|... ...+.++.+.+. ...++++|...+. ..+..++..+... ...+.+.|..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~------~~~vvl~g~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~ 172 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKER------GYRVVLLGGPEEQ----EKEIADQIAAGLQ-NPVINLAGKT 172 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCC------T-EEEE--SSHHH----HHHHHHHHHTTHT-TTTEEETTTS
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhh------CceEEEEccchHH----HHHHHHHHHHhcc-cceEeecCCC
Confidence 4446777777767777643 355555555432 4688888876421 1122233333322 1268888998
Q ss_pred ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 345 ~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
+-.|+..+++.||++|.+ ++ ..+-=|.|.|+|+|+--
T Consensus 173 ~l~e~~ali~~a~~~I~~---Dt--g~~HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 173 SLRELAALISRADLVIGN---DT--GPMHLAAALGTPTVALF 209 (247)
T ss_dssp -HHHHHHHHHTSSEEEEE---SS--HHHHHHHHTT--EEEEE
T ss_pred CHHHHHHHHhcCCEEEec---CC--hHHHHHHHHhCCEEEEe
Confidence 999999999999999976 22 24455888999999863
No 167
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=96.75 E-value=0.14 Score=52.31 Aligned_cols=197 Identities=15% Similarity=0.130 Sum_probs=115.6
Q ss_pred HHHHHhhcCCEEEEcCHHHHHHHHH-----HhCC-CCCeEEecCCCCCCCCccC-------------C------------
Q 012436 214 MYGLVGSCADLAMVNSSWTQSHIEK-----LWGI-PDRIKRVYPPCDTSGLQVL-------------P------------ 262 (464)
Q Consensus 214 ~~~~~~~~ad~vi~~S~~~~~~~~~-----~~~~-~~~i~~i~~~~d~~~~~~~-------------~------------ 262 (464)
|...+++.+..+-.+|+-..+.+++ ++.. +.++.-+-|||....+-.. .
T Consensus 324 Ma~LAl~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~ 403 (713)
T PF00343_consen 324 MANLALRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWRTDLEQLEK 403 (713)
T ss_dssp HHHHHHHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGG
T ss_pred hhHHHHHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhccccccCHHHHHH
Confidence 3345677788888999888776643 2222 6778888999877665310 0
Q ss_pred -----C-----------------------------CCCCCCcEEEEEeccCCCCChHH-H---HHHHHHHHHHhcCCCCC
Q 012436 263 -----L-----------------------------ERSTEYPAIISVAQFRPEKAHPL-Q---LEAFSVALRKLDADLPR 304 (464)
Q Consensus 263 -----~-----------------------------~~~~~~~~i~~~G~~~~~K~~~~-l---l~a~~~l~~~~~~~~p~ 304 (464)
. ...++....+++-|+..+|...+ + ++-+.+++........+
T Consensus 404 l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~P 483 (713)
T PF00343_consen 404 LEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRP 483 (713)
T ss_dssp GGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCC
Confidence 0 00045577899999999998877 3 34455555542111235
Q ss_pred cEEEEEcCCCCCccHHHHHHHHHHHHhc--------CCCC--cEEEccCCChhHHHHHHhcCcEEEEcC--CCCCCChHH
Q 012436 305 PRLQFVGSCRNKSDEERLQSLKDKSIEL--------KVDG--NVEFYKNLLYRDLVKLLGGAVVGIHSM--IDEHFGISV 372 (464)
Q Consensus 305 ~~l~i~G~~~~~~~~~~~~~l~~~~~~~--------~l~~--~v~~~g~~~~~~~~~~l~~ad~~v~ps--~~e~~~~~~ 372 (464)
+++++.|...... ..-+++.+++.+. .+.+ +|.|+...+-.-...+++.+|+-+..| ..|..|++-
T Consensus 484 v~~IFaGKAhP~d--~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSg 561 (713)
T PF00343_consen 484 VQFIFAGKAHPGD--YMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSG 561 (713)
T ss_dssp EEEEEE----TT---HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHH
T ss_pred eEEEEeccCCCCc--HHHHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCc
Confidence 7899988753321 1123333333221 2333 689999888888888999999999877 489999999
Q ss_pred HHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHH
Q 012436 373 VEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYA 414 (464)
Q Consensus 373 ~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la 414 (464)
+-+|..|.+.+++--|.. -|+.+. .+.++.|++. +.+++.
T Consensus 562 MK~~~NGaL~lstlDG~n-iEi~e~-vG~eN~fiFG~~~~ev~ 602 (713)
T PF00343_consen 562 MKAAMNGALNLSTLDGWN-IEIAEA-VGEENIFIFGLTAEEVE 602 (713)
T ss_dssp HHHHHTT-EEEEESSTCH-HHHHHH-H-GGGSEEES-BHHHHH
T ss_pred chhhcCCCeEEecccchh-HHHHHh-cCCCcEEEcCCCHHHHH
Confidence 999999999999976765 566432 2246778886 555543
No 168
>PLN02764 glycosyltransferase family protein
Probab=96.62 E-value=0.075 Score=52.08 Aligned_cols=224 Identities=7% Similarity=-0.050 Sum_probs=113.7
Q ss_pred hhcCCEEEEcCHHHH-HHHHHHhCC--CCCeEEecCCCCCC-CCccCC-------CCCCCCCcEEEEEeccCCCCChHHH
Q 012436 219 GSCADLAMVNSSWTQ-SHIEKLWGI--PDRIKRVYPPCDTS-GLQVLP-------LERSTEYPAIISVAQFRPEKAHPLQ 287 (464)
Q Consensus 219 ~~~ad~vi~~S~~~~-~~~~~~~~~--~~~i~~i~~~~d~~-~~~~~~-------~~~~~~~~~i~~~G~~~~~K~~~~l 287 (464)
.+.++.|+++|=... ..+.+.+.. ..++..|.+-+... ...... ..++++..+.+.+|+.... ..+.+
T Consensus 197 ~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~-~~~q~ 275 (453)
T PLN02764 197 LMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVIL-EKDQF 275 (453)
T ss_pred hccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccccC-CHHHH
Confidence 467888988875442 222233311 23565554432111 000000 1112444677777876331 22444
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEcC-CCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC--cEEEEcCC
Q 012436 288 LEAFSVALRKLDADLPRPRLQFVGS-CRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA--VVGIHSMI 364 (464)
Q Consensus 288 l~a~~~l~~~~~~~~p~~~l~i~G~-~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a--d~~v~ps~ 364 (464)
-+.+..|..... ++.+++--. +.+.......+.+++..+. ..+.+.+++|+.++ ++.. ++||.
T Consensus 276 ~ela~gL~~s~~----pflwv~r~~~~~~~~~~~lp~~f~~r~~g----rG~v~~~W~PQ~~v---L~h~~v~~Fvt--- 341 (453)
T PLN02764 276 QELCLGMELTGS----PFLVAVKPPRGSSTIQEALPEGFEERVKG----RGVVWGGWVQQPLI---LSHPSVGCFVS--- 341 (453)
T ss_pred HHHHHHHHhCCC----CeEEEEeCCCCCcchhhhCCcchHhhhcc----CCcEEeCCCCHHHH---hcCcccCeEEe---
Confidence 455555443321 455554411 1110000111233333322 24677799988876 5554 44552
Q ss_pred CCCCChHHHHHHHhCCcEEEeCCCCCc---ccee-cccCCccceeec------C-CHHHHHHHHHHHHcCCH-HHHHHHH
Q 012436 365 DEHFGISVVEYMAAGAIPIAHNSAGPK---MDIV-LEEDGQQTGFLA------Q-NAEEYADAIVKIISMPE-TERLEMA 432 (464)
Q Consensus 365 ~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v-~~~~~~~~g~~~------~-~~~~la~~i~~l~~~~~-~~~~~~~ 432 (464)
.+.-++++||+.+|+|+|+-...+.- ...+ +. -+.|+.. . +.+++.++++++++ ++ +..+++.
T Consensus 342 -H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~---~g~gv~~~~~~~~~~~~e~i~~av~~vm~-~~~~~g~~~r 416 (453)
T PLN02764 342 -HCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDE---LKVSVEVAREETGWFSKESLRDAINSVMK-RDSEIGNLVK 416 (453)
T ss_pred -cCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHH---hceEEEeccccCCccCHHHHHHHHHHHhc-CCchhHHHHH
Confidence 23356899999999999997654321 1122 22 2444432 2 78999999999997 65 4455555
Q ss_pred HHHHHH---H-HccCHHHHHHHHHHHHHHHHhhc
Q 012436 433 AAARRR---A-ARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 433 ~~~~~~---~-~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
+++++. + +.=|-....+++.+.+.+...+.
T Consensus 417 ~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~~~~ 450 (453)
T PLN02764 417 KNHTKWRETLASPGLLTGYVDNFIESLQDLVSGT 450 (453)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccc
Confidence 555443 3 33344445556666665555443
No 169
>PLN02554 UDP-glycosyltransferase family protein
Probab=96.57 E-value=0.04 Score=54.89 Aligned_cols=80 Identities=13% Similarity=-0.070 Sum_probs=50.0
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---c-ceecccCCccceeec---
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---M-DIVLEEDGQQTGFLA--- 407 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~-~~v~~~~~~~~g~~~--- 407 (464)
.+++.+.+++|+.++..- .++.+|| ++-| -.+++||+.+|+|+|+-...+-- . ..+.. -+.|...
T Consensus 341 ~~~g~v~~W~PQ~~iL~H-~~v~~Fv---tH~G-~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~---~g~Gv~l~~~ 412 (481)
T PLN02554 341 KDIGKVIGWAPQVAVLAK-PAIGGFV---THCG-WNSILESLWFGVPMAAWPLYAEQKFNAFEMVEE---LGLAVEIRKY 412 (481)
T ss_pred ccCceEEeeCCHHHHhCC-cccCccc---ccCc-cchHHHHHHcCCCEEecCccccchhhHHHHHHH---hCceEEeecc
Confidence 356777899987765211 3444455 2233 45899999999999997644220 1 11222 2334322
Q ss_pred -----------C-CHHHHHHHHHHHHc
Q 012436 408 -----------Q-NAEEYADAIVKIIS 422 (464)
Q Consensus 408 -----------~-~~~~la~~i~~l~~ 422 (464)
. +.+++.++|++++.
T Consensus 413 ~~~~~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 413 WRGDLLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred ccccccccccCeEcHHHHHHHHHHHhc
Confidence 2 78899999999995
No 170
>PLN03004 UDP-glycosyltransferase
Probab=96.46 E-value=0.047 Score=53.56 Aligned_cols=82 Identities=15% Similarity=0.021 Sum_probs=55.7
Q ss_pred CcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---ccee-cccCCccceeec----
Q 012436 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIV-LEEDGQQTGFLA---- 407 (464)
Q Consensus 336 ~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v-~~~~~~~~g~~~---- 407 (464)
.++.+.+++|+.+ +++.+++..+-+ .+.-++++||+++|+|+|+-...+.- ...+ .. -+.|+..
T Consensus 334 ~g~~v~~W~PQ~~---iL~H~~v~~FvT--H~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~---~g~g~~l~~~~ 405 (451)
T PLN03004 334 KGMVVKSWAPQVP---VLNHKAVGGFVT--HCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDE---IKIAISMNESE 405 (451)
T ss_pred CcEEEEeeCCHHH---HhCCCccceEec--cCcchHHHHHHHcCCCEEeccccccchhhHHHHHHH---hCceEEecCCc
Confidence 4788999998877 578888743332 23345899999999999997643220 1122 22 2455443
Q ss_pred --C-CHHHHHHHHHHHHcCCHH
Q 012436 408 --Q-NAEEYADAIVKIISMPET 426 (464)
Q Consensus 408 --~-~~~~la~~i~~l~~~~~~ 426 (464)
. +.++++++|+++++ ++.
T Consensus 406 ~~~~~~e~l~~av~~vm~-~~~ 426 (451)
T PLN03004 406 TGFVSSTEVEKRVQEIIG-ECP 426 (451)
T ss_pred CCccCHHHHHHHHHHHhc-CHH
Confidence 1 78999999999998 754
No 171
>PLN02534 UDP-glycosyltransferase
Probab=96.40 E-value=1.2 Score=44.38 Aligned_cols=49 Identities=12% Similarity=-0.086 Sum_probs=35.2
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCC
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
..++.+.|++|+.+ +++..++..+- ..+..++++||+++|+|+|+-...
T Consensus 343 ~~g~~v~~w~pq~~---iL~h~~v~~fv--tH~G~ns~~ea~~~GvP~v~~P~~ 391 (491)
T PLN02534 343 GRGLLIKGWAPQVL---ILSHPAIGGFL--THCGWNSTIEGICSGVPMITWPLF 391 (491)
T ss_pred cCCeeccCCCCHHH---HhcCCccceEE--ecCccHHHHHHHHcCCCEEecccc
Confidence 34788889998855 56677763332 224456899999999999997654
No 172
>PLN00414 glycosyltransferase family protein
Probab=96.35 E-value=0.14 Score=50.35 Aligned_cols=152 Identities=5% Similarity=-0.110 Sum_probs=84.5
Q ss_pred CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcC-CCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGS-CRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~-~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
++..+.+.+|+.... ..+.+.+....|..... ++-+++... +.........+.+++..+. ....+.|++|
T Consensus 251 ~~sVvyvsfGS~~~~-~~~q~~e~a~gL~~s~~----~Flwvvr~~~~~~~~~~~lp~~f~~r~~~----~g~vv~~w~P 321 (446)
T PLN00414 251 PGSVVFCAFGTQFFF-EKDQFQEFCLGMELTGL----PFLIAVMPPKGSSTVQEALPEGFEERVKG----RGIVWEGWVE 321 (446)
T ss_pred CCceEEEeecccccC-CHHHHHHHHHHHHHcCC----CeEEEEecCCCcccchhhCChhHHHHhcC----CCeEEeccCC
Confidence 344666777876433 22455555555544431 444444321 1110011122345555543 2456679998
Q ss_pred hhHHHHHHhcC--cEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---ccee-cccCCccceeec-------CCHHH
Q 012436 346 YRDLVKLLGGA--VVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIV-LEEDGQQTGFLA-------QNAEE 412 (464)
Q Consensus 346 ~~~~~~~l~~a--d~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v-~~~~~~~~g~~~-------~~~~~ 412 (464)
+.++ ++.. +.||. .+.-++++||+++|+|+|+-...+.- ...+ +. -+.|... -+.++
T Consensus 322 Q~~v---L~h~~v~~fvt----H~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~---~g~g~~~~~~~~~~~~~~~ 391 (446)
T PLN00414 322 QPLI---LSHPSVGCFVN----HCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEE---LEVSVKVQREDSGWFSKES 391 (446)
T ss_pred HHHH---hcCCccceEEe----cCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHH---hCeEEEeccccCCccCHHH
Confidence 8775 5555 44552 23346899999999999997644220 1122 22 2445433 17889
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 012436 413 YADAIVKIISMPE-TERLEMAAAARRR 438 (464)
Q Consensus 413 la~~i~~l~~~~~-~~~~~~~~~~~~~ 438 (464)
+++++++++. ++ +..+++.+++++.
T Consensus 392 i~~~v~~~m~-~~~e~g~~~r~~a~~~ 417 (446)
T PLN00414 392 LRDTVKSVMD-KDSEIGNLVKRNHKKL 417 (446)
T ss_pred HHHHHHHHhc-CChhhHHHHHHHHHHH
Confidence 9999999997 64 4455566666544
No 173
>PLN02167 UDP-glycosyltransferase family protein
Probab=96.35 E-value=0.096 Score=52.11 Aligned_cols=79 Identities=16% Similarity=0.052 Sum_probs=50.0
Q ss_pred CcEEEccCCChhHHHHHHhcCc--EEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---c-ceecccCCccceeec--
Q 012436 336 GNVEFYKNLLYRDLVKLLGGAV--VGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---M-DIVLEEDGQQTGFLA-- 407 (464)
Q Consensus 336 ~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~-~~v~~~~~~~~g~~~-- 407 (464)
++..+.+++|+.++ ++... .||. +-|+ ++++||+++|+|+|+-...+.- . .++.. -+.|+..
T Consensus 340 ~rg~v~~w~PQ~~i---L~h~~vg~fvt---H~G~-nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~---~g~g~~~~~ 409 (475)
T PLN02167 340 GRGLVCGWAPQVEI---LAHKAIGGFVS---HCGW-NSVLESLWFGVPIATWPMYAEQQLNAFTMVKE---LGLAVELRL 409 (475)
T ss_pred cCeeeeccCCHHHH---hcCcccCeEEe---eCCc-ccHHHHHHcCCCEEeccccccchhhHHHHHHH---hCeeEEeec
Confidence 34567799988764 65544 4552 2333 4899999999999996544220 1 11222 2344322
Q ss_pred --------C-CHHHHHHHHHHHHcCCH
Q 012436 408 --------Q-NAEEYADAIVKIISMPE 425 (464)
Q Consensus 408 --------~-~~~~la~~i~~l~~~~~ 425 (464)
. +.++++++|++++. ++
T Consensus 410 ~~~~~~~~~~~~~~l~~av~~~m~-~~ 435 (475)
T PLN02167 410 DYVSAYGEIVKADEIAGAVRSLMD-GE 435 (475)
T ss_pred ccccccCCcccHHHHHHHHHHHhc-CC
Confidence 1 78899999999997 54
No 174
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=96.33 E-value=0.13 Score=51.12 Aligned_cols=77 Identities=17% Similarity=0.081 Sum_probs=49.4
Q ss_pred CcEEEccCCChhHHHHHHhc--CcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cce-ecccCCccceeec--
Q 012436 336 GNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDI-VLEEDGQQTGFLA-- 407 (464)
Q Consensus 336 ~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~-v~~~~~~~~g~~~-- 407 (464)
.++.+.+++|+.++ |+. +++||. +-| -.+++||+++|+|+|+-...+.- ... ++. -+.|...
T Consensus 343 ~g~~v~~w~PQ~~v---L~h~~v~~fvt---H~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~---~gvG~~~~~ 412 (477)
T PLN02863 343 RGLVIRGWAPQVAI---LSHRAVGAFLT---HCG-WNSVLEGLVAGVPMLAWPMAADQFVNASLLVDE---LKVAVRVCE 412 (477)
T ss_pred CCEEecCCCCHHHH---hcCCCcCeEEe---cCC-chHHHHHHHcCCCEEeCCccccchhhHHHHHHh---hceeEEecc
Confidence 46888899987654 665 455552 233 45899999999999996544221 111 122 2444433
Q ss_pred -----CCHHHHHHHHHHHHc
Q 012436 408 -----QNAEEYADAIVKIIS 422 (464)
Q Consensus 408 -----~~~~~la~~i~~l~~ 422 (464)
-+.+++++++.+++.
T Consensus 413 ~~~~~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 413 GADTVPDSDELARVFMESVS 432 (477)
T ss_pred CCCCCcCHHHHHHHHHHHhh
Confidence 167899999998873
No 175
>PLN00164 glucosyltransferase; Provisional
Probab=96.30 E-value=0.16 Score=50.56 Aligned_cols=93 Identities=15% Similarity=0.065 Sum_probs=56.9
Q ss_pred cEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cc-eecccCCccceeecC----
Q 012436 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MD-IVLEEDGQQTGFLAQ---- 408 (464)
Q Consensus 337 ~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~-~v~~~~~~~~g~~~~---- 408 (464)
.+.+.+++|+.++ |+..++..+- ++-| -.+++||+++|+|+|+-..-+.- .. ++.. -+.|+..+
T Consensus 340 g~~v~~w~PQ~~i---L~h~~vg~fv-tH~G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~---~gvG~~~~~~~~ 411 (480)
T PLN00164 340 GLVWPTWAPQKEI---LAHAAVGGFV-THCG-WNSVLESLWHGVPMAPWPLYAEQHLNAFELVAD---MGVAVAMKVDRK 411 (480)
T ss_pred CeEEeecCCHHHH---hcCcccCeEE-eecc-cchHHHHHHcCCCEEeCCccccchhHHHHHHHH---hCeEEEeccccc
Confidence 4677799987765 6666653332 2233 34899999999999996543220 11 1222 24454331
Q ss_pred -----CHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH
Q 012436 409 -----NAEEYADAIVKIISMPET-ERLEMAAAARRR 438 (464)
Q Consensus 409 -----~~~~la~~i~~l~~~~~~-~~~~~~~~~~~~ 438 (464)
+.++++++|.+++. +++ +.+++.+++++.
T Consensus 412 ~~~~~~~e~l~~av~~vm~-~~~~~~~~~r~~a~~~ 446 (480)
T PLN00164 412 RDNFVEAAELERAVRSLMG-GGEEEGRKAREKAAEM 446 (480)
T ss_pred cCCcCcHHHHHHHHHHHhc-CCchhHHHHHHHHHHH
Confidence 57899999999997 653 244455544433
No 176
>PLN02208 glycosyltransferase family protein
Probab=96.21 E-value=0.22 Score=48.94 Aligned_cols=203 Identities=7% Similarity=-0.074 Sum_probs=104.2
Q ss_pred HhhcCCEEEEcCHHHHH-HHHHHhCC--CCCeEEecCCCC-CCCCccCC-------CCCCCCCcEEEEEeccCCCCChHH
Q 012436 218 VGSCADLAMVNSSWTQS-HIEKLWGI--PDRIKRVYPPCD-TSGLQVLP-------LERSTEYPAIISVAQFRPEKAHPL 286 (464)
Q Consensus 218 ~~~~ad~vi~~S~~~~~-~~~~~~~~--~~~i~~i~~~~d-~~~~~~~~-------~~~~~~~~~i~~~G~~~~~K~~~~ 286 (464)
.+..+|.|+++|=...+ .+.+.+.. ..++..|.+-.. .+.-...+ ....++..+++.+|+.... ..+.
T Consensus 190 ~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l-~~~q 268 (442)
T PLN02208 190 GLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIIL-EKDQ 268 (442)
T ss_pred hhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccC-CHHH
Confidence 45689999998865432 23333321 235554443221 11000000 0112345667777876531 3344
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcC-CCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCC
Q 012436 287 QLEAFSVALRKLDADLPRPRLQFVGS-CRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID 365 (464)
Q Consensus 287 ll~a~~~l~~~~~~~~p~~~l~i~G~-~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~ 365 (464)
+.+.+..+..... ++.+++--. +.........+.+++..+ ..++.+.+++|+.++ |+...+..+-+
T Consensus 269 ~~e~~~~l~~s~~----pf~wv~r~~~~~~~~~~~lp~~f~~r~~----~~g~~v~~W~PQ~~i---L~H~~v~~Fvt-- 335 (442)
T PLN02208 269 FQELCLGMELTGL----PFLIAVKPPRGSSTVQEGLPEGFEERVK----GRGVVWGGWVQQPLI---LDHPSIGCFVN-- 335 (442)
T ss_pred HHHHHHHHHhCCC----cEEEEEeCCCcccchhhhCCHHHHHHHh----cCCcEeeccCCHHHH---hcCCccCeEEc--
Confidence 5565555422221 444444311 110000111223333333 247788899988775 66666544332
Q ss_pred CCCChHHHHHHHhCCcEEEeCCCCCc---cc-eecccCCccceeecC-------CHHHHHHHHHHHHcCCH-HHHHHHHH
Q 012436 366 EHFGISVVEYMAAGAIPIAHNSAGPK---MD-IVLEEDGQQTGFLAQ-------NAEEYADAIVKIISMPE-TERLEMAA 433 (464)
Q Consensus 366 e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~-~v~~~~~~~~g~~~~-------~~~~la~~i~~l~~~~~-~~~~~~~~ 433 (464)
.+.-++++||+++|+|+|+-..-+.- .. ++.. -+.|...+ +.+++.++|+++++ ++ +..+++.+
T Consensus 336 HcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~---~g~gv~~~~~~~~~~~~~~l~~ai~~~m~-~~~e~g~~~r~ 411 (442)
T PLN02208 336 HCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEE---FEVSVEVSREKTGWFSKESLSNAIKSVMD-KDSDLGKLVRS 411 (442)
T ss_pred cCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHH---hceeEEeccccCCcCcHHHHHHHHHHHhc-CCchhHHHHHH
Confidence 23345899999999999997644220 11 1221 23444431 67899999999997 65 34555666
Q ss_pred HHHHH
Q 012436 434 AARRR 438 (464)
Q Consensus 434 ~~~~~ 438 (464)
++++.
T Consensus 412 ~~~~~ 416 (442)
T PLN02208 412 NHTKL 416 (442)
T ss_pred HHHHH
Confidence 55543
No 177
>PRK14986 glycogen phosphorylase; Provisional
Probab=96.13 E-value=0.051 Score=56.18 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=101.2
Q ss_pred CCCcEEEEEeccCCCCChHH-HHHHHHHHHHHhcC---CCCCcEEEEEcCCCCCc--cHHHHHHHHHHHH----hcCCCC
Q 012436 267 TEYPAIISVAQFRPEKAHPL-QLEAFSVALRKLDA---DLPRPRLQFVGSCRNKS--DEERLQSLKDKSI----ELKVDG 336 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~-ll~a~~~l~~~~~~---~~p~~~l~i~G~~~~~~--~~~~~~~l~~~~~----~~~l~~ 336 (464)
++...++++-|+...|...+ ++..+..+.+-..+ ...+.++++.|...... .....+.+-+.++ +-.+.+
T Consensus 541 p~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~ 620 (815)
T PRK14986 541 PKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGD 620 (815)
T ss_pred cccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcC
Confidence 45678899999999998887 65554444332211 11257888888743322 1122333333333 112233
Q ss_pred --cEEEccCCChhHHHHHHhcCcEEEEcCC--CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHH
Q 012436 337 --NVEFYKNLLYRDLVKLLGGAVVGIHSMI--DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAE 411 (464)
Q Consensus 337 --~v~~~g~~~~~~~~~~l~~ad~~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~ 411 (464)
+|.|+....-.-...++.+||+-...|. .|..|++-+-+|..|.+.+++--|.. .|+.+ +.+++|||++. +.+
T Consensus 621 ~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~n-vEi~e-~vG~eN~~~fG~~~~ 698 (815)
T PRK14986 621 KLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGAN-VEMLE-HVGEENIFIFGNTAE 698 (815)
T ss_pred ceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCch-hHHHH-hcCCCcEEEeCCCHH
Confidence 6899988877888889999999888764 89999999999999999999987766 56654 23358999997 777
Q ss_pred HHHHH
Q 012436 412 EYADA 416 (464)
Q Consensus 412 ~la~~ 416 (464)
++.+.
T Consensus 699 ev~~~ 703 (815)
T PRK14986 699 EVEAL 703 (815)
T ss_pred HHHHH
Confidence 66654
No 178
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=96.12 E-value=0.62 Score=42.39 Aligned_cols=160 Identities=19% Similarity=0.128 Sum_probs=85.2
Q ss_pred HHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCC--CCcEEEEEecc---CCCCChHHHH
Q 012436 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERST--EYPAIISVAQF---RPEKAHPLQL 288 (464)
Q Consensus 214 ~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~--~~~~i~~~G~~---~~~K~~~~ll 288 (464)
..+.+++.++.+.+=.+...+.+.+. +.+.++.++|-++- ........... .......+... ....-.+.+.
T Consensus 120 ~~~~~l~~~~~i~vRD~~S~~~l~~~-g~~~~~~~~~D~af--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (286)
T PF04230_consen 120 LLRRILSKADYISVRDEYSYELLKKL-GISGNVKLVPDPAF--LLPPSYPDEDKSKPKRNYISVSNSPSRNNEEYIEEIA 196 (286)
T ss_pred HHHHHHhCCCEEEECCHHHHHHHHHc-CCCCCcEEEeCchh--hcCcccccccccccccceeeeccccchhhhhHHHHHH
Confidence 34666788999999888888866554 54337777775542 11110111111 01222222222 2233445556
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCC
Q 012436 289 EAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHF 368 (464)
Q Consensus 289 ~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~ 368 (464)
+.+..+.+.. ..+.+..................... ..............+.+++.++++++|++|....+
T Consensus 197 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH--- 267 (286)
T PF04230_consen 197 ELIQRLLDKG----YKIVLLPFSPSDDDEDDDDFNEIDIK--AEKFFNVIIIDYSLSPDELLELISQADLVISMRLH--- 267 (286)
T ss_pred HHHHHhhccc----ceeEEEEeeeccchhhHHHHHhhhhh--cccccceeEecCCCCHHHHHHHHhcCCEEEecCCH---
Confidence 6666665532 13444444433322111111111100 11122344555667889999999999999966433
Q ss_pred ChHHHHHHHhCCcEEEeCC
Q 012436 369 GISVVEYMAAGAIPIAHNS 387 (464)
Q Consensus 369 ~~~~~Ea~a~G~PvI~~~~ 387 (464)
..+=|+++|+|+|+-+.
T Consensus 268 --~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 --GAILALSLGVPVIAISY 284 (286)
T ss_pred --HHHHHHHcCCCEEEEec
Confidence 35669999999998653
No 179
>PLN02207 UDP-glycosyltransferase
Probab=96.06 E-value=0.15 Score=50.40 Aligned_cols=80 Identities=19% Similarity=0.068 Sum_probs=49.8
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cc-eecccCCccceeec---
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MD-IVLEEDGQQTGFLA--- 407 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~-~v~~~~~~~~g~~~--- 407 (464)
.++..+.+++|+.++ ++...+..+- ++-| -++++||+.+|+|+|+-...+.- .. ++.. -+.|+-+
T Consensus 331 ~~~g~i~~W~PQ~~I---L~H~~vg~Fv-TH~G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~---~gvGv~~~~~ 402 (468)
T PLN02207 331 SGRGMICGWSPQVEI---LAHKAVGGFV-SHCG-WNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKE---LKLAVELKLD 402 (468)
T ss_pred CCCeEEEEeCCHHHH---hcccccceee-ecCc-cccHHHHHHcCCCEEecCccccchhhHHHHHHH---hCceEEEecc
Confidence 456777899988876 4544442222 2223 34889999999999997644320 11 1221 2344311
Q ss_pred ------C--CHHHHHHHHHHHHc
Q 012436 408 ------Q--NAEEYADAIVKIIS 422 (464)
Q Consensus 408 ------~--~~~~la~~i~~l~~ 422 (464)
+ +.+++.++|++++.
T Consensus 403 ~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 403 YRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cccccCCcccHHHHHHHHHHHHh
Confidence 1 77899999999985
No 180
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=95.99 E-value=0.041 Score=56.70 Aligned_cols=147 Identities=16% Similarity=0.115 Sum_probs=100.7
Q ss_pred CCCcEEEEEeccCCCCChHH-HHHHHHH---HHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcC--------C
Q 012436 267 TEYPAIISVAQFRPEKAHPL-QLEAFSV---ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELK--------V 334 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~-ll~a~~~---l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~--------l 334 (464)
++....+++-|+...|...+ ++..+.. ++.....+..+.++++.|...... ...+.+.+++.... +
T Consensus 525 p~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y--~~aK~iIklI~~va~~iN~Dp~v 602 (794)
T TIGR02093 525 PNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGY--HMAKLIIKLINSVAEVVNNDPAV 602 (794)
T ss_pred ccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCc--HHHHHHHHHHHHHHHHhccChhh
Confidence 45577888899999998887 5555444 443311111255888888743322 12233444433332 3
Q ss_pred CC--cEEEccCCChhHHHHHHhcCcEEEEcC--CCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-C
Q 012436 335 DG--NVEFYKNLLYRDLVKLLGGAVVGIHSM--IDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-N 409 (464)
Q Consensus 335 ~~--~v~~~g~~~~~~~~~~l~~ad~~v~ps--~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~ 409 (464)
.+ +|.|+....-.-...++.+||+-...| ..|..|++-+-+|..|.+.|+|--|.. .|+.+ +.+++|+|++. +
T Consensus 603 ~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGan-vEi~e-~vG~eN~fiFG~~ 680 (794)
T TIGR02093 603 GDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGAN-VEIRE-EVGAENIFIFGLT 680 (794)
T ss_pred CCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchh-HHHHH-HhCcccEEEcCCC
Confidence 34 689998887788888999999988776 489999999999999999999977766 56643 23457899997 7
Q ss_pred HHHHHHHH
Q 012436 410 AEEYADAI 417 (464)
Q Consensus 410 ~~~la~~i 417 (464)
.+++.+.-
T Consensus 681 ~~ev~~~~ 688 (794)
T TIGR02093 681 VEEVEALR 688 (794)
T ss_pred HHHHHHHH
Confidence 77766543
No 181
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=95.99 E-value=0.16 Score=49.92 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=53.1
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCccceeec----
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQTGFLA---- 407 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~~g~~~---- 407 (464)
.++..+.+++|+.+ +|+..++..+-+ .+..++++||+.+|+|+|+-...+-- ...+.+. -+.|+-.
T Consensus 326 ~~~g~v~~W~PQ~~---iL~h~~vg~fvt--H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~--~~~G~~~~~~~ 398 (455)
T PLN02152 326 EEVGMIVSWCSQIE---VLRHRAVGCFVT--HCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEI--WKTGVRVRENS 398 (455)
T ss_pred cCCeEEEeeCCHHH---HhCCcccceEEe--eCCcccHHHHHHcCCCEEeccccccchHHHHHHHHH--hCceEEeecCc
Confidence 45777789998766 477777644332 23345899999999999997644320 1111110 0133322
Q ss_pred -C--CHHHHHHHHHHHHcCCHH
Q 012436 408 -Q--NAEEYADAIVKIISMPET 426 (464)
Q Consensus 408 -~--~~~~la~~i~~l~~~~~~ 426 (464)
+ +.++++++++++++ ++.
T Consensus 399 ~~~~~~e~l~~av~~vm~-~~~ 419 (455)
T PLN02152 399 EGLVERGEIRRCLEAVME-EKS 419 (455)
T ss_pred CCcCcHHHHHHHHHHHHh-hhH
Confidence 1 68899999999997 653
No 182
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=95.94 E-value=0.18 Score=49.99 Aligned_cols=81 Identities=14% Similarity=0.038 Sum_probs=53.1
Q ss_pred CcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---ccee-cccCCccceeec----
Q 012436 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIV-LEEDGQQTGFLA---- 407 (464)
Q Consensus 336 ~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v-~~~~~~~~g~~~---- 407 (464)
.++.+.+++|+.++ ++...+..+-+ .+.-++++||+.+|+|+|+-...+.- ...+ .. -+.|...
T Consensus 338 rg~vv~~W~PQ~~i---L~h~~vg~Fit--H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~---~g~gv~~~~~~ 409 (481)
T PLN02992 338 RGFVVPSWAPQAEI---LAHQAVGGFLT--HCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDE---LGIAVRSDDPK 409 (481)
T ss_pred CCEEEeecCCHHHH---hCCcccCeeEe--cCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHH---hCeeEEecCCC
Confidence 36888999988775 66666532221 23345899999999999997654320 1122 22 2445433
Q ss_pred C--CHHHHHHHHHHHHcCCH
Q 012436 408 Q--NAEEYADAIVKIISMPE 425 (464)
Q Consensus 408 ~--~~~~la~~i~~l~~~~~ 425 (464)
+ +.++++++|.+++. ++
T Consensus 410 ~~~~~~~l~~av~~vm~-~~ 428 (481)
T PLN02992 410 EVISRSKIEALVRKVMV-EE 428 (481)
T ss_pred CcccHHHHHHHHHHHhc-CC
Confidence 1 78899999999997 63
No 183
>PLN02173 UDP-glucosyl transferase family protein
Probab=95.94 E-value=0.3 Score=48.00 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=58.2
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCccceeecC---
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQTGFLAQ--- 408 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~~g~~~~--- 408 (464)
.+++.+.+++|+.+ +|+...+..+-+ .+..++++||+++|+|+|+-...+.- ...+.+. -+.|+-+.
T Consensus 316 ~~~~~i~~W~PQ~~---iL~H~~v~~Fvt--HcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~--~g~Gv~v~~~~ 388 (449)
T PLN02173 316 KDKSLVLKWSPQLQ---VLSNKAIGCFMT--HCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDV--WKVGVRVKAEK 388 (449)
T ss_pred CCceEEeCCCCHHH---HhCCCccceEEe--cCccchHHHHHHcCCCEEecCchhcchHHHHHHHHH--hCceEEEeecc
Confidence 35788889998766 467766443332 23456899999999999997644320 1122220 03443321
Q ss_pred -----CHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012436 409 -----NAEEYADAIVKIISMPETERLEMAAAARR 437 (464)
Q Consensus 409 -----~~~~la~~i~~l~~~~~~~~~~~~~~~~~ 437 (464)
+.+++++++++++. +++ .+++.+++++
T Consensus 389 ~~~~~~~e~v~~av~~vm~-~~~-~~~~r~~a~~ 420 (449)
T PLN02173 389 ESGIAKREEIEFSIKEVME-GEK-SKEMKENAGK 420 (449)
T ss_pred cCCcccHHHHHHHHHHHhc-CCh-HHHHHHHHHH
Confidence 67999999999997 643 2444444443
No 184
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.90 E-value=0.078 Score=54.91 Aligned_cols=148 Identities=18% Similarity=0.155 Sum_probs=99.6
Q ss_pred CCCcEEEEEeccCCCCChHH-HHHHH---HHHHHHhcCCCCCcEEEEEcCCCCCcc--HHHHHHHHHHHHh----cCCCC
Q 012436 267 TEYPAIISVAQFRPEKAHPL-QLEAF---SVALRKLDADLPRPRLQFVGSCRNKSD--EERLQSLKDKSIE----LKVDG 336 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~-ll~a~---~~l~~~~~~~~p~~~l~i~G~~~~~~~--~~~~~~l~~~~~~----~~l~~ 336 (464)
++....+++-|+...|...+ ++..+ .+++........+.++++.|....... ....+.+...++. -.+.+
T Consensus 528 p~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~ 607 (797)
T cd04300 528 PDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGD 607 (797)
T ss_pred CCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCC
Confidence 56678899999999998888 55554 445443110112477888887433211 1122222233321 11333
Q ss_pred --cEEEccCCChhHHHHHHhcCcEEEEcC--CCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHH
Q 012436 337 --NVEFYKNLLYRDLVKLLGGAVVGIHSM--IDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAE 411 (464)
Q Consensus 337 --~v~~~g~~~~~~~~~~l~~ad~~v~ps--~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~ 411 (464)
+|.|+....-.-...++.+||+-...| ..|..|++-+-+|..|.+.++|--|.. .|+.+ +.+++|+|++. +.+
T Consensus 608 ~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGan-vEi~e-~vG~eN~fiFG~~~~ 685 (797)
T cd04300 608 KLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGAN-VEIAE-EVGEENIFIFGLTAE 685 (797)
T ss_pred ceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchh-HHHHH-HhCcCcEEEeCCCHH
Confidence 689998887788888999999988776 489999999999999999999977766 56543 23457899997 766
Q ss_pred HHHHH
Q 012436 412 EYADA 416 (464)
Q Consensus 412 ~la~~ 416 (464)
++.+.
T Consensus 686 ev~~~ 690 (797)
T cd04300 686 EVEAL 690 (797)
T ss_pred HHHHH
Confidence 66544
No 185
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=95.85 E-value=0.15 Score=42.68 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=56.2
Q ss_pred CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccccCcceehhhhchh
Q 012436 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (464)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (464)
||.-..+..|.+.+.....+.+..+++.....+.. ...+..+...... .+...+..... ..+.+......+.
T Consensus 8 GGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~-k~~~~~~~~~~~~----~~~~~~r~r~v---~q~~~~~~~~~l~ 79 (170)
T PF08660_consen 8 GGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRS-KAEQLEKSSSKRH----KILEIPRAREV---GQSYLTSIFTTLR 79 (170)
T ss_pred cHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHH-HHHHHHHhccccc----eeeccceEEEe---chhhHhhHHHHHH
Confidence 68999999999999444444555555543322221 1122222111100 11111111111 0112223344455
Q ss_pred hhHHHHHHhhhcCCcEEEecccccccch--hhhcc------CceEEE
Q 012436 128 SVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIF------GCRVIC 166 (464)
Q Consensus 128 ~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~------~~p~v~ 166 (464)
+...+...+.+.+||+|+++........ +++.. +.++|+
T Consensus 80 ~~~~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIy 126 (170)
T PF08660_consen 80 AFLQSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIY 126 (170)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEE
Confidence 6667777788889999996655443322 45556 777776
No 186
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=95.84 E-value=0.039 Score=53.24 Aligned_cols=162 Identities=14% Similarity=0.057 Sum_probs=74.2
Q ss_pred CCCcchhhHHHHHHhhhh--------CCC--CceEEEcccC-CCCchhHHHHHHhhcCcccCCCceeeeeeccc------
Q 012436 47 GGGGERVLWCAVKAIQEE--------SPD--LDCIVYTGDH-DAFPDSLLARAVDRFGVELLHPPKVVHLYRRK------ 109 (464)
Q Consensus 47 ~GG~~~~~~~l~~~L~~~--------g~~--~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 109 (464)
.||.-.++.+++++|.+. |-+ ..|.++|.-. +.....+.+.... +.-..+..+.+++.+.
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~---~~gt~~a~IlRvPF~~~~gi~~ 371 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEK---VSGTENARILRVPFGPEKGILR 371 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEE---ETTESSEEEEEE-ESESTEEE-
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccc---cCCCCCcEEEEecCCCCcchhh
Confidence 389999999999999764 322 3466666532 1111222111111 1111233566666543
Q ss_pred -ccc-cccCcceehhhhchhhhHHHHHH-hh--hcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhccc
Q 012436 110 -WIE-ESTYPRFTMIGQSFGSVYLSWEA-LC--KFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVR 182 (464)
Q Consensus 110 -~~~-~~~~~~~~~~~~~~~~~~~~~~~-l~--~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~ 182 (464)
|+. ...||.+. .....+.+. .. ...||+||.+.+.+.... ++...|+|...+-|.-.. ..+..
T Consensus 372 kwisrf~lWPyLe------~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsLek----~Ky~~ 441 (550)
T PF00862_consen 372 KWISRFDLWPYLE------EFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSLEK----TKYED 441 (550)
T ss_dssp S---GGG-GGGHH------HHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-HH----HHHHT
T ss_pred hccchhhchhhHH------HHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhhcccc----ccccc
Confidence 221 12333221 111222222 22 357999998777666544 777999999999993221 00000
Q ss_pred ccccccCCCcccccchhhhHHHHHHHHHHH-HHHHHHhhcCCEEEEcCHHHHH
Q 012436 183 EGSSMYNNNASIAQSNWLSQCKIVYYTFFS-WMYGLVGSCADLAMVNSSWTQS 234 (464)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ad~vi~~S~~~~~ 234 (464)
.. ..+......|....+ ..+..+++.||.||+.+.....
T Consensus 442 --s~-----------~~w~e~e~~Yhfs~qftAd~iamn~adfIItST~QEI~ 481 (550)
T PF00862_consen 442 --SD-----------LYWKEIEEKYHFSCQFTADLIAMNAADFIITSTYQEIA 481 (550)
T ss_dssp --TT-----------TTSHHHHHHH-HHHHHHHHHHHHHHSSEEEESSHHHHH
T ss_pred --cC-----------CCHHHHHhhccchhhhhHHHHHhhcCCEEEEcchHhhc
Confidence 00 011112222221111 2356778999999998765543
No 187
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=95.82 E-value=1.3 Score=39.53 Aligned_cols=138 Identities=11% Similarity=0.146 Sum_probs=74.7
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHH----------HHHhcCCC--CcEEE
Q 012436 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKD----------KSIELKVD--GNVEF 340 (464)
Q Consensus 273 ~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~----------~~~~~~l~--~~v~~ 340 (464)
+|+||....||+..+++..+...+. +++.-++-|-.... ....-+.. .+.+..+. .-+.+
T Consensus 187 ~yigR~Tt~kG~~~mfD~h~~~lK~-----~~~~t~~~GierS~---A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v 258 (355)
T PF11440_consen 187 RYIGRQTTWKGPRRMFDLHEKILKP-----AGFKTIMEGIERSP---AKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPV 258 (355)
T ss_dssp EEE--SSGGG-HHHHHHHHHHTTTT-----TT-EEEEE---SST---HHHHHHHTT--EEEE-CTGGGG---SSS--EEE
T ss_pred eeeeeeeeecCcHHHhhhHHHhcCC-----cchhHHhhhhhcCC---ceeeeecCCcccccCccccccCcccCCCCccee
Confidence 8999999999999999999886554 47888888854332 23222222 01111122 23677
Q ss_pred ccCCChhHHHHHHhcCcEEEEcCC------CCCCChHHHHHHHhCCcEEE-eCCCCCc------cceecccCCccce-ee
Q 012436 341 YKNLLYRDLVKLLGGAVVGIHSMI------DEHFGISVVEYMAAGAIPIA-HNSAGPK------MDIVLEEDGQQTG-FL 406 (464)
Q Consensus 341 ~g~~~~~~~~~~l~~ad~~v~ps~------~e~~~~~~~Ea~a~G~PvI~-~~~~~~~------~~~v~~~~~~~~g-~~ 406 (464)
+|..=.+|..+.|+.+-+...-+. .+..-.+-+|..|||+-.|- ...|... ..++.. ..| +.
T Consensus 259 ~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~----~~~~I~ 334 (355)
T PF11440_consen 259 YGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDH----PYSAIY 334 (355)
T ss_dssp ESS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS------S-EE
T ss_pred cchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeecc----CcceeE
Confidence 888888999999999988766542 33466778999999995543 3333110 112222 333 33
Q ss_pred cC--CHHHHHHHHHHHHc
Q 012436 407 AQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 407 ~~--~~~~la~~i~~l~~ 422 (464)
++ |.++-.+.|.++.+
T Consensus 335 ~De~dle~T~ekl~E~a~ 352 (355)
T PF11440_consen 335 FDENDLESTVEKLIEVAN 352 (355)
T ss_dssp E-TTSHHHHHHHHHHHHT
T ss_pred eccchHHHHHHHHHHHhc
Confidence 33 77777777777765
No 188
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=95.74 E-value=0.11 Score=53.51 Aligned_cols=145 Identities=12% Similarity=0.090 Sum_probs=96.4
Q ss_pred CCCcEEEEEeccCCCCChHH-HHHHHHHHHHHhcC---CCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcC--------C
Q 012436 267 TEYPAIISVAQFRPEKAHPL-QLEAFSVALRKLDA---DLPRPRLQFVGSCRNKSDEERLQSLKDKSIELK--------V 334 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~-ll~a~~~l~~~~~~---~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~--------l 334 (464)
++...++++-|+...|...+ ++..+..+.+-..+ +..+.++++.|...... ..-+.+.+++.... +
T Consensus 527 p~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y--~~aK~iIklI~~va~~in~Dp~v 604 (798)
T PRK14985 527 PQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGY--YLAKNIIFAINKVAEVINNDPLV 604 (798)
T ss_pred chhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCc--HHHHHHHHHHHHHHHHhcCChhh
Confidence 45567888889999998877 65555444332221 11247888888753321 11233333332221 2
Q ss_pred CC--cEEEccCCChhHHHHHHhcCcEEEEcC--CCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-C
Q 012436 335 DG--NVEFYKNLLYRDLVKLLGGAVVGIHSM--IDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-N 409 (464)
Q Consensus 335 ~~--~v~~~g~~~~~~~~~~l~~ad~~v~ps--~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~ 409 (464)
.+ +|.|+....-.-...++.+||+-...| ..|..|++-+-+|..|.+.++|--|.. -|+.+ +.+++|||++. +
T Consensus 605 ~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGan-vEi~e-~vG~eN~f~fG~~ 682 (798)
T PRK14985 605 GDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGAN-VEIAE-QVGEENIFIFGHT 682 (798)
T ss_pred CCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchH-HHHHH-HhCcCcEEEeCCC
Confidence 23 689998887788888999999988776 489999999999999999999877765 46554 23347888886 5
Q ss_pred HHHHHH
Q 012436 410 AEEYAD 415 (464)
Q Consensus 410 ~~~la~ 415 (464)
.+++.+
T Consensus 683 ~~ev~~ 688 (798)
T PRK14985 683 VEQVKA 688 (798)
T ss_pred HHHHHH
Confidence 555443
No 189
>PLN02555 limonoid glucosyltransferase
Probab=95.73 E-value=0.43 Score=47.35 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=57.7
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCc-cceeec---
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQ-QTGFLA--- 407 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~-~~g~~~--- 407 (464)
.+++.+.+++|+.++..- .++.+||. +-| -.+++||+.+|+|+|+-..-+.- ...+.+ . +.|+..
T Consensus 336 ~~~g~v~~W~PQ~~iL~H-~~v~~Fvt---H~G-~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~---~~gvGv~l~~~ 407 (480)
T PLN02555 336 GDKGKIVQWCPQEKVLAH-PSVACFVT---HCG-WNSTMEALSSGVPVVCFPQWGDQVTDAVYLVD---VFKTGVRLCRG 407 (480)
T ss_pred CCceEEEecCCHHHHhCC-CccCeEEe---cCC-cchHHHHHHcCCCEEeCCCccccHHHHHHHHH---HhCceEEccCC
Confidence 457888899988664321 44555662 233 45899999999999997644310 111222 2 445433
Q ss_pred -----C-CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012436 408 -----Q-NAEEYADAIVKIISMPETERLEMAAAARRR 438 (464)
Q Consensus 408 -----~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 438 (464)
. +.+++.++|++++. ++ +-+++++++++.
T Consensus 408 ~~~~~~v~~~~v~~~v~~vm~-~~-~g~~~r~ra~~l 442 (480)
T PLN02555 408 EAENKLITREEVAECLLEATV-GE-KAAELKQNALKW 442 (480)
T ss_pred ccccCcCcHHHHHHHHHHHhc-Cc-hHHHHHHHHHHH
Confidence 1 68899999999997 64 234455444443
No 190
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=95.71 E-value=0.12 Score=50.77 Aligned_cols=152 Identities=17% Similarity=0.101 Sum_probs=98.7
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHH
Q 012436 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLV 350 (464)
Q Consensus 271 ~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~ 350 (464)
-++|-=...-+|+-+..++++.+. . +++-.|.+.... ...+++.|.=+|.++.+|+.
T Consensus 280 AlVyGK~~~~w~~k~~~l~~l~~~---~-----eih~tV~~~~~~---------------~~~~P~~V~NHG~l~~~ef~ 336 (559)
T PF15024_consen 280 ALVYGKERYMWKGKEKYLDVLHKY---M-----EIHGTVYDEPQR---------------PPNVPSFVKNHGILSGDEFQ 336 (559)
T ss_pred eEEEccchhhhcCcHHHHHHHHhh---c-----EEEEEeccCCCC---------------CcccchhhhhcCcCCHHHHH
Confidence 344433345577888877777553 1 556566544321 11225567778999999999
Q ss_pred HHHhcCcEEEEcCC-CCCCChHHHHHHHhCCcEEEeCCCCCcc----ceecc----------------cCCccceeecC-
Q 012436 351 KLLGGAVVGIHSMI-DEHFGISVVEYMAAGAIPIAHNSAGPKM----DIVLE----------------EDGQQTGFLAQ- 408 (464)
Q Consensus 351 ~~l~~ad~~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~----~~v~~----------------~~~~~~g~~~~- 408 (464)
++++.+.++|-... .| |-+.+||+|+|+|.|-........ ++..+ .++.-..+.++
T Consensus 337 ~lL~~akvfiGlGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~ 414 (559)
T PF15024_consen 337 QLLRKAKVFIGLGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDI 414 (559)
T ss_pred HHHHhhhEeeecCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcC
Confidence 99999999996532 33 456899999999988765432211 11110 01122335555
Q ss_pred -CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHH
Q 012436 409 -NAEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRP 457 (464)
Q Consensus 409 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~ 457 (464)
|.+++.+||+++++ ++. .-++ -+|+.+.+.+++..+++.
T Consensus 415 ~n~~~v~~Avk~il~-~~v---------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 415 NNSTEVEAAVKAILA-TPV---------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred CCHHHHHHHHHHHHh-cCC---------CCcCCcccCHHHHHHHHHHHHHh
Confidence 99999999999998 542 2355 789999999999887764
No 191
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.65 E-value=0.16 Score=45.67 Aligned_cols=209 Identities=14% Similarity=0.109 Sum_probs=113.7
Q ss_pred hcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccC---CCCCCCCC-cEEEEEecc--CCCCChHHHHHHHHH
Q 012436 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVL---PLERSTEY-PAIISVAQF--RPEKAHPLQLEAFSV 293 (464)
Q Consensus 220 ~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~---~~~~~~~~-~~i~~~G~~--~~~K~~~~ll~a~~~ 293 (464)
++|-.++.-.....+.+.+. |+ +...+.|+. .+...+. +....... ..-+-.|+- +...|...++.++..
T Consensus 177 rrc~~vf~rD~~Taq~L~~r-gv--na~~vGnpm-mD~L~p~~~~~q~l~~g~~viaLLPGsR~pea~~nl~~il~slca 252 (412)
T COG4370 177 RRCWAVFPRDALTAQHLANR-GV--NAAYVGNPM-MDGLPPPERDPQLLLTGVPVIALLPGSRVPEAQTNLAVILGSLCA 252 (412)
T ss_pred ccceeeeccccccHHHHHhc-CC--chhhccChh-hccCCCccCCchhhccCCceEEecCCCCChHHHhhHHHHHHHHhh
Confidence 78888998888888888776 33 333455543 1112211 11111222 223344543 445788888887777
Q ss_pred HHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC--------CcEEEccCCChhHHHHHHhcCcEEEEcCCC
Q 012436 294 ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD--------GNVEFYKNLLYRDLVKLLGGAVVGIHSMID 365 (464)
Q Consensus 294 l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~--------~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~ 365 (464)
+..... . +++.+.....-+ ..-+..+.++-|.. +|-.+ ..+.+...+++..+|+.+-
T Consensus 253 l~~~~a----~--vvfw~ai~~~lp---l~~l~~l~e~~gWq~~ad~~~kdnc~l--~lsqqsfadiLH~adaalg---- 317 (412)
T COG4370 253 LPAMFA----L--VVFWAAIAPELP---LLLLWTLEERQGWQPLADRFGKDNCSL--WLSQQSFADILHAADAALG---- 317 (412)
T ss_pred hHHHHH----H--HHHHhccCcCCC---HHHHHHHHHhcCcchhhhhhccCceEE--EEeHHHHHHHHHHHHHHHH----
Confidence 765531 2 233343222111 12333333333322 12222 2345788888888887442
Q ss_pred CCCChHHHHHHHhCCcEEEeCCCCCccceecccC---C---ccceeecC-CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012436 366 EHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEED---G---QQTGFLAQ-NAEEYADAIVKIISMPETERLEMAAAARRR 438 (464)
Q Consensus 366 e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~---~---~~~g~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 438 (464)
.-|...-.+.-.|+|||.....|+ .+.-... . |..-.++. +.++-+.+.++++. |++..+.+.+|++++
T Consensus 318 -mAGTAtEQavGLGkPvi~fPg~GP--Qy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~-dp~r~~air~nGqrR 393 (412)
T COG4370 318 -MAGTATEQAVGLGKPVIGFPGQGP--QYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLG-DPQRLTAIRHNGQRR 393 (412)
T ss_pred -hccchHHHhhccCCceeecCCCCC--CcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhc-ChHHHHHHHhcchhh
Confidence 235556678899999999876554 2211000 0 22223444 44444444455999 999999999999988
Q ss_pred H-HccCHHHHHHHH
Q 012436 439 A-ARFSEQRFYEDF 451 (464)
Q Consensus 439 ~-~~~s~~~~~~~~ 451 (464)
+ +.=...++++.+
T Consensus 394 iGqaGaa~rIAe~l 407 (412)
T COG4370 394 IGQAGAARRIAEEL 407 (412)
T ss_pred ccCcchHHHHHHHH
Confidence 7 544334444433
No 192
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=95.50 E-value=0.019 Score=41.07 Aligned_cols=71 Identities=24% Similarity=0.281 Sum_probs=50.3
Q ss_pred CcccCCC-ceeeeeecccccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch----hhhccCceEEEE
Q 012436 93 GVELLHP-PKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP----LARIFGCRVICY 167 (464)
Q Consensus 93 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~----~~~~~~~p~v~~ 167 (464)
|++.-.+ .++++++.........+|.+ +......+.++.+++.|+||.++..+.... -++..|.+.|++
T Consensus 8 GvRyltngLKVYYlP~~~~~~~~t~Pt~------~~~~pl~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfT 81 (90)
T PF08288_consen 8 GVRYLTNGLKVYYLPLKVFYNQCTLPTL------FGSFPLLRNILIRERIDIVHGHQAFSTLCHEAILHARTMGLKTVFT 81 (90)
T ss_pred eeEEcCCCeEEEeecchhhhcCcchHHH------HHhhHHHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEee
Confidence 4444444 48888888776665555544 444555666678889999998877665543 566899999999
Q ss_pred ee
Q 012436 168 TH 169 (464)
Q Consensus 168 ~h 169 (464)
-|
T Consensus 82 DH 83 (90)
T PF08288_consen 82 DH 83 (90)
T ss_pred cc
Confidence 99
No 193
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=94.76 E-value=0.16 Score=42.80 Aligned_cols=84 Identities=19% Similarity=0.137 Sum_probs=53.5
Q ss_pred HHHHHHhhhcCCcEEEecccccccch---hhh--cc-CceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHH
Q 012436 130 YLSWEALCKFTPLYYFDTSGYAFTYP---LAR--IF-GCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQC 203 (464)
Q Consensus 130 ~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~--~~-~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (464)
..+.+.+++.+||+|+++...+...+ +.+ .. ++|++..+-+ . +....
T Consensus 79 ~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD-~---~~~H~----------------------- 131 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD-F---DTVHP----------------------- 131 (169)
T ss_pred HHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC-C---CCCCc-----------------------
Confidence 35667788999999998888765552 222 23 5666532221 0 00001
Q ss_pred HHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCC
Q 012436 204 KIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPP 252 (464)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~ 252 (464)
.++...+|..++.|+++++.+.+.+-.++++.+...|
T Consensus 132 ------------~W~~~~~D~y~Vase~~~~~l~~~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 132 ------------FWIHPGVDRYFVASEEVKEELIERGIPPERIHVTGIP 168 (169)
T ss_pred ------------CeecCCCCEEEECCHHHHHHHHHcCCChhHEEEeCcc
Confidence 1222789999999999999999964337788766544
No 194
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=1.6 Score=40.95 Aligned_cols=169 Identities=13% Similarity=0.161 Sum_probs=106.5
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcC-CCCCccHHHHHHHHHHHHhcCCCCcEEEc-----cCC
Q 012436 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGS-CRNKSDEERLQSLKDKSIELKVDGNVEFY-----KNL 344 (464)
Q Consensus 271 ~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~-~~~~~~~~~~~~l~~~~~~~~l~~~v~~~-----g~~ 344 (464)
.+=|.|+....+-.....+...+.+++ ++.++|+-. |....+.+.++++.+..+..+ +++|.|. |--
T Consensus 156 ~iP~ygsyte~dpv~ia~egv~~fKke------~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~-Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 156 RVPFYGSYTEADPVKIASEGVDRFKKE------NFDVIIVDTSGRHKQEASLFEEMKQVSKAIK-PDEIIFVMDASIGQA 228 (483)
T ss_pred CCeeEecccccchHHHHHHHHHHHHhc------CCcEEEEeCCCchhhhHHHHHHHHHHHhhcC-CCeEEEEEeccccHh
Confidence 344556667777778888888888876 788888874 667777788899998888777 6777775 333
Q ss_pred ChhHHHHHHhcCcE--EEEcCC----CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceee---c--CCHHHH
Q 012436 345 LYRDLVKLLGGAVV--GIHSMI----DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFL---A--QNAEEY 413 (464)
Q Consensus 345 ~~~~~~~~l~~ad~--~v~ps~----~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~---~--~~~~~l 413 (464)
-.++...+=...|+ .|++-. ..|..++..+ +.++|||--..|-..+|+-.- ..--|+ . .|.+.+
T Consensus 229 ae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaVa--aTksPIiFIGtGEhmdDlE~F---~pk~FvsrlLGmGDi~gl 303 (483)
T KOG0780|consen 229 AEAQARAFKETVDVGAVILTKLDGHAKGGGALSAVA--ATKSPIIFIGTGEHMDDLEPF---DPKPFVSRLLGMGDIEGL 303 (483)
T ss_pred HHHHHHHHHHhhccceEEEEecccCCCCCceeeehh--hhCCCEEEEecCccccccCCC---ChHHHHHHHhccccHHHH
Confidence 33444444455675 344421 2233344443 579999998877553333211 111122 2 299999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 414 ADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 414 a~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
.+.+.++..-|.++ +.++-.+ -+|+...+.+++.+++.
T Consensus 304 vek~~ev~~~d~~e---l~~kl~~--gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 304 VEKVQEVGKDDAKE---LVEKLKQ--GKFTLRDFYDQFQNIMK 341 (483)
T ss_pred HHHHHHHhhhhHHH---HHHHHHh--CCccHHHHHHHHHHHHh
Confidence 99999887303222 2222211 57999999999988764
No 195
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=93.93 E-value=0.7 Score=42.22 Aligned_cols=105 Identities=13% Similarity=0.123 Sum_probs=60.2
Q ss_pred CCcEEEEEeccCCC-------CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE
Q 012436 268 EYPAIISVAQFRPE-------KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF 340 (464)
Q Consensus 268 ~~~~i~~~G~~~~~-------K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~ 340 (464)
++..+++..+.... .....+++.+..+.+.. |+.+++|-=...+..... ...+.+.. +.. ++.+
T Consensus 116 ~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~----p~~~lvvK~HP~~~~~~~-~~~~~~~~---~~~-~~~~ 186 (269)
T PF05159_consen 116 NKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKEN----PDAKLVVKPHPDERGGNK-YSYLEELP---NLP-NVVI 186 (269)
T ss_pred CCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHC----CCCEEEEEECchhhCCCC-hhHhhhhh---cCC-CeEE
Confidence 33455555554333 24566677777776665 678877655431110000 01111111 223 4444
Q ss_pred ccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCC
Q 012436 341 YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 341 ~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
...- -.+.+++..||.++.-+ +.+-+||+.+|+||++....
T Consensus 187 ~~~~--~~~~~Ll~~s~~Vvtin-----StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 187 IDDD--VNLYELLEQSDAVVTIN-----STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred ECCC--CCHHHHHHhCCEEEEEC-----CHHHHHHHHcCCceEEecCc
Confidence 3322 57889999999877542 56789999999999997644
No 196
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=93.76 E-value=5.9 Score=38.22 Aligned_cols=217 Identities=14% Similarity=0.097 Sum_probs=116.3
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCc-----------cCCCCCCCCCcEEEEEeccCCCC----
Q 012436 219 GSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQ-----------VLPLERSTEYPAIISVAQFRPEK---- 282 (464)
Q Consensus 219 ~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~-----------~~~~~~~~~~~~i~~~G~~~~~K---- 282 (464)
..+.|.+.+.++.....+.+.++. ..++..+.-|-....+. ......+.++.+|+|.-.+....
T Consensus 146 ~~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~~ 225 (388)
T COG1887 146 RNHWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILLIQLALPLPQDKKVILYAPTFRDNDVLIG 225 (388)
T ss_pred eeeeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhccchhhhHHHhhhcCCcccCceEEecCCccCCccccc
Confidence 367788999998888888888877 44554443333221121 01112224578999998887665
Q ss_pred --ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEE
Q 012436 283 --AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGI 360 (464)
Q Consensus 283 --~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v 360 (464)
..+..++..+....... ++..+++-=. +... +.+...- ...+.+...-. ..++.++|..+|++|
T Consensus 226 ~~~~~~~~~~~~~~~~l~~---~~~~ii~k~H-p~is-----~~~~~~~---~~~~~~~~vs~--~~di~dll~~sDiLI 291 (388)
T COG1887 226 TQFFNLDIDIEKLKEKLGE---NEYVIIVKPH-PLIS-----DKIDKRY---ALDDFVLDVSD--NADINDLLLVSDILI 291 (388)
T ss_pred hhhhhhhhhHHHHHHhhcc---CCeEEEEecC-hhhh-----hhhhhhh---hccceeEeccc--chhHHHHHhhhCEEE
Confidence 23333333332222221 1555544433 2110 1111100 11222333322 489999999999998
Q ss_pred EcCCCCCCChHHHHHHHhCCcEEEeCCCCCc----cceecccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012436 361 HSMIDEHFGISVVEYMAAGAIPIAHNSAGPK----MDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEMAAAAR 436 (464)
Q Consensus 361 ~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~----~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~ 436 (464)
..++.++.|+|...+|||..-..... .....+.....-|-++.+.+++.++|..... +++...+-.+...
T Consensus 292 -----TDySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~~-~~~~~~~k~~~~~ 365 (388)
T COG1887 292 -----TDYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYDE-DGNYDLEKLRVFN 365 (388)
T ss_pred -----eechHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhhc-ccchhHHHHHHHH
Confidence 45677899999999999986432210 0111110002345566689999999988877 4443333222222
Q ss_pred HHHHccCHHHHHHHHHHHH
Q 012436 437 RRAARFSEQRFYEDFKAAI 455 (464)
Q Consensus 437 ~~~~~~s~~~~~~~~~~~~ 455 (464)
+....+.-....+++.+.+
T Consensus 366 ~~~~~~~dg~ss~ri~~~i 384 (388)
T COG1887 366 DKFNSYEDGRSSERILKLI 384 (388)
T ss_pred HhhcccccccHHHHHHHHH
Confidence 3333334455566655544
No 197
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=93.53 E-value=1.2 Score=44.74 Aligned_cols=91 Identities=23% Similarity=0.191 Sum_probs=53.1
Q ss_pred CCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCC----CCccceecccCCccceeecC--
Q 012436 335 DGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSA----GPKMDIVLEEDGQQTGFLAQ-- 408 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~~~~v~~~~~~~~g~~~~-- 408 (464)
..+|...+++|+.++. ++...+..+- .+-|++ +++|++.+|+|+|+.+.- -....+..+ +..+....
T Consensus 334 ~~nV~~~~W~PQ~~ll--l~H~~v~~Fv-THgG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~---g~~~v~~~~~ 406 (496)
T KOG1192|consen 334 RGNVVLSKWAPQNDLL--LDHPAVGGFV-THGGWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRH---GGGGVLDKRD 406 (496)
T ss_pred cCceEEecCCCcHHHh--cCCCcCcEEE-ECCccc-HHHHHHhcCCceecCCccccchhHHHHHHhC---CCEEEEehhh
Confidence 3479999999988876 3222222222 344555 559999999999964322 222223333 44444442
Q ss_pred -CHHHHHHHHHHHHcCCHHHHHHHHH
Q 012436 409 -NAEEYADAIVKIISMPETERLEMAA 433 (464)
Q Consensus 409 -~~~~la~~i~~l~~~~~~~~~~~~~ 433 (464)
+..++.+++.+++. +++..+...+
T Consensus 407 ~~~~~~~~~~~~il~-~~~y~~~~~~ 431 (496)
T KOG1192|consen 407 LVSEELLEAIKEILE-NEEYKEAAKR 431 (496)
T ss_pred cCcHHHHHHHHHHHc-ChHHHHHHHH
Confidence 33338888888887 6654444333
No 198
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.78 E-value=0.77 Score=34.42 Aligned_cols=78 Identities=14% Similarity=-0.057 Sum_probs=51.6
Q ss_pred EEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE--ccCCChhH--HHHHHhcCcEEEEcCCCCCCCh---HHHHHHHhC
Q 012436 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF--YKNLLYRD--LVKLLGGAVVGIHSMIDEHFGI---SVVEYMAAG 379 (464)
Q Consensus 307 l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~--~g~~~~~~--~~~~l~~ad~~v~ps~~e~~~~---~~~Ea~a~G 379 (464)
++++|+.. .....+++.++++|.. .+.+ -+.....+ +.+.+..||++|++...-+-.. +--+|-..|
T Consensus 2 vliVGG~~-----~~~~~~~~~~~~~G~~-~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ 75 (97)
T PF10087_consen 2 VLIVGGRE-----DRERRYKRILEKYGGK-LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYG 75 (97)
T ss_pred EEEEcCCc-----ccHHHHHHHHHHcCCE-EEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcC
Confidence 56777632 2247788888888754 3333 14443444 9999999999888764333332 246777889
Q ss_pred CcEEEeCCCCC
Q 012436 380 AIPIAHNSAGP 390 (464)
Q Consensus 380 ~PvI~~~~~~~ 390 (464)
+|++.++..+.
T Consensus 76 ip~~~~~~~~~ 86 (97)
T PF10087_consen 76 IPIIYSRSRGV 86 (97)
T ss_pred CcEEEECCCCH
Confidence 99999986654
No 199
>PLN03015 UDP-glucosyl transferase
Probab=92.59 E-value=2.2 Score=42.24 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=47.3
Q ss_pred EEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---ccee-cccCCccceeec------
Q 012436 338 VEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIV-LEEDGQQTGFLA------ 407 (464)
Q Consensus 338 v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v-~~~~~~~~g~~~------ 407 (464)
+.+.+++|+.++. +...+..+-+ + +--++++||+++|+|+|+-...+.- ...+ .. -+.|+-.
T Consensus 337 l~v~~W~PQ~~vL---~h~~vg~fvt-H-~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~---~gvg~~~~~~~~~ 408 (470)
T PLN03015 337 LVVTQWAPQVEIL---SHRSIGGFLS-H-CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEE---IGVAVRTSELPSE 408 (470)
T ss_pred eEEEecCCHHHHh---ccCccCeEEe-c-CCchhHHHHHHcCCCEEecccccchHHHHHHHHHH---hCeeEEecccccC
Confidence 6678999888764 4444422221 2 2245899999999999997643220 1111 12 2333322
Q ss_pred --CCHHHHHHHHHHHHc
Q 012436 408 --QNAEEYADAIVKIIS 422 (464)
Q Consensus 408 --~~~~~la~~i~~l~~ 422 (464)
-+.++++++|+++++
T Consensus 409 ~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 409 KVIGREEVASLVRKIVA 425 (470)
T ss_pred CccCHHHHHHHHHHHHc
Confidence 177899999999984
No 200
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=92.10 E-value=0.27 Score=45.77 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=45.9
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCC-cEEEeCCC-CCccceecccCCccceeecC--CHHHHHHHH
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA-IPIAHNSA-GPKMDIVLEEDGQQTGFLAQ--NAEEYADAI 417 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~-PvI~~~~~-~~~~~~v~~~~~~~~g~~~~--~~~~la~~i 417 (464)
.+..+.|+++.+++.|.....+..-++|||++|+ |||.++.- -+.++++.- ....+.++ +..++.+.|
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw---~~fsv~v~~~~~~~l~~iL 299 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDW---SRFSVRVPEADLPELPEIL 299 (302)
T ss_pred hHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCH---HHEEEEECHHHHHHHHHHH
Confidence 5688999999999999776668888999999998 77776522 222444433 34445554 444444443
No 201
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=90.26 E-value=1.1 Score=40.63 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=55.2
Q ss_pred CCcEEEeccc-ccccch-hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhh---hHHHHHHHHHHHH
Q 012436 140 TPLYYFDTSG-YAFTYP-LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWL---SQCKIVYYTFFSW 213 (464)
Q Consensus 140 ~~Dvv~~~~~-~~~~~~-~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 213 (464)
+.|++|+.+. ++..+. +++ ..|+|+++|=|+-..-. +.... ....|. ...+..+.+.+..
T Consensus 172 ~advyHsvstGyAgl~g~~~k~~~g~P~lLTEHGIY~RE--------R~~ei------~~a~w~~~~~~~r~~wi~~f~~ 237 (268)
T PF11997_consen 172 KADVYHSVSTGYAGLLGALAKYRYGRPFLLTEHGIYTRE--------REIEI------LQADWIWESPYVRDLWIRFFES 237 (268)
T ss_pred CCCEEecCCccHHHHHHHHHHHHhCCCEEEecCCccHHH--------HHHHH------HhcccccchHHHHHHHHHHHHH
Confidence 5699996554 333333 444 89999999999432111 11000 112232 4556667778888
Q ss_pred HHHHHhhcCCEEEEcCHHHHHHHHHHhCC
Q 012436 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGI 242 (464)
Q Consensus 214 ~~~~~~~~ad~vi~~S~~~~~~~~~~~~~ 242 (464)
+.+.+++.||.|++.++..++ ++...|.
T Consensus 238 l~~~~Y~~Ad~I~~l~~~n~~-~q~~~Ga 265 (268)
T PF11997_consen 238 LSRLAYRAADRITPLYEYNRE-WQIELGA 265 (268)
T ss_pred HHHHHHHhhCeecccchhhHH-HHHHhCC
Confidence 889999999999999997544 4444443
No 202
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=90.06 E-value=5.9 Score=39.32 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=61.1
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCC-cEEEeCCC-CCccceecccCCccceeecCCHHHHHHHHHHHHc-
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA-IPIAHNSA-GPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIIS- 422 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~-PvI~~~~~-~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~- 422 (464)
...+.+.++.+.+++.|...+...-.+.||+..|| |||.++.- ....+.+.- .+..+.++ .+++-+.|.+.+.
T Consensus 334 ~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~---~~fSV~v~-~~~v~~~~~~iL~~ 409 (464)
T KOG1021|consen 334 PLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDW---TEFSVFVP-EKDVPELIKNILLS 409 (464)
T ss_pred cchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccc---eEEEEEEE-HHHhhhHHHHHHHh
Confidence 36788999999999999988888889999999998 89988753 332333333 34455555 5555555444443
Q ss_pred CCHHHHHHHHHHHHHHH-Hcc
Q 012436 423 MPETERLEMAAAARRRA-ARF 442 (464)
Q Consensus 423 ~~~~~~~~~~~~~~~~~-~~~ 442 (464)
...++..+|.++....+ +.+
T Consensus 410 i~~~~~~~m~~~v~~~v~r~~ 430 (464)
T KOG1021|consen 410 IPEEEVLRMRENVIRLVPRHF 430 (464)
T ss_pred cCHHHHHHHHHHHHHHHHhhE
Confidence 23445566666655433 443
No 203
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=88.85 E-value=5.5 Score=36.86 Aligned_cols=155 Identities=13% Similarity=0.052 Sum_probs=72.8
Q ss_pred HhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCC-CCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHH
Q 012436 218 VGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALR 296 (464)
Q Consensus 218 ~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~-d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~ 296 (464)
.-...|.|++.+......+.+... . .+-++..++ |+....-......++ ..+.-+. ....++..++.++++..
T Consensus 56 ~~~~~DlIi~~gt~aa~~~~~~~~-~-~iPVVf~~V~dp~~~~l~~~~~~~~-~nvTGv~---~~~~~~~~l~l~~~l~P 129 (294)
T PF04392_consen 56 KAQKPDLIIAIGTPAAQALAKHLK-D-DIPVVFCGVSDPVGAGLVDSLDRPG-KNVTGVS---ERPPIEKQLELIKKLFP 129 (294)
T ss_dssp CCTS-SEEEEESHHHHHHHHHH-S-S--S-EEEECES-TTTTTS-S-SSS---SSEEEEE---E---HHHHHHHHHHHST
T ss_pred hcCCCCEEEEeCcHHHHHHHHhcC-C-CcEEEEEeccChhhhhccccccCCC-CCEEEEE---CCcCHHHHHHHHHHhCC
Confidence 346899999999888888877753 2 144566666 322211111111111 2333232 33455666666666643
Q ss_pred HhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh----cCcEEEEcCC---CCCCC
Q 012436 297 KLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG----GAVVGIHSMI---DEHFG 369 (464)
Q Consensus 297 ~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~----~ad~~v~ps~---~e~~~ 369 (464)
.. -++-++-+..+.......+.+++.++++|+. +....--+.+++.+.+. ..|+++.+.. ...+.
T Consensus 130 ~~------k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~--l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~ 201 (294)
T PF04392_consen 130 DA------KRIGVLYDPSEPNSVAQIEQLRKAAKKLGIE--LVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDSNFE 201 (294)
T ss_dssp T--------EEEEEEETT-HHHHHHHHHHHHHHHHTT-E--EEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHHTHH
T ss_pred CC------CEEEEEecCCCccHHHHHHHHHHHHHHcCCE--EEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHhHHH
Confidence 21 2442333332222235667888888888864 33222223355555544 5687766642 22222
Q ss_pred hHHHHHHHhCCcEEEeC
Q 012436 370 ISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 370 ~~~~Ea~a~G~PvI~~~ 386 (464)
..+..+...++|++++.
T Consensus 202 ~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 202 AILQLANEAKIPVFGSS 218 (294)
T ss_dssp HHHHHCCCTT--EEESS
T ss_pred HHHHHHHhcCCCEEECC
Confidence 33455667899999976
No 204
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=88.39 E-value=1.4 Score=31.61 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=47.8
Q ss_pred HHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCC---CCCCCcEEEEEeccCC
Q 012436 217 LVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE---RSTEYPAIISVAQFRP 280 (464)
Q Consensus 217 ~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~---~~~~~~~i~~~G~~~~ 280 (464)
.+...+|.|++..+...+.+++.+ ..++..+|-++|+..+.+.... ...-.--|.|+|++..
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~~G--~~~V~yLPLAa~~~~~~p~~~~~~~~~~~~~dIsFVG~~y~ 78 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRNLG--AENVFYLPLAANPERFRPIPVDPEERKKYECDISFVGSLYP 78 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHHcC--CCCEEEccccCCHHHhCcccCCcccccccCCCEEEeCcCcc
Confidence 345889999999999999999874 6799999999999988865443 1223346899998643
No 205
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=88.39 E-value=6.8 Score=32.70 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHh-hhcccccccccc----eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 11 VITAVLASILILA-SHVHNARRNRTT----SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~~m----kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
+|+-+.+.+.+++ +|..++.++.+. .++++-.+ ||...-+.+|.+.|.+.. +..-.+..
T Consensus 10 vig~~~~li~~~v~~~~~~~~k~~Pk~~s~~~lVvlGS----GGHT~EMlrLl~~l~~~y-~~r~yI~a 73 (211)
T KOG3339|consen 10 VIGYVIVLIALLVFRHTQRSTKKDPKDKSLSTLVVLGS----GGHTGEMLRLLEALQDLY-SPRSYIAA 73 (211)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcCCcceEEEEEcC----CCcHHHHHHHHHHHHhhc-CceEEEEe
Confidence 3343333333333 555555555444 78876443 477777788999997763 44444433
No 206
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=85.87 E-value=35 Score=33.06 Aligned_cols=137 Identities=13% Similarity=0.090 Sum_probs=74.8
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHH
Q 012436 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (464)
Q Consensus 270 ~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~ 349 (464)
..++.+|.- +..--+++.|..++ --++.|++... +.-++++++++ ...++.+++
T Consensus 179 ~~vlvIGAG------em~~lva~~L~~~g-----~~~i~IaNRT~--------erA~~La~~~~-------~~~~~l~el 232 (414)
T COG0373 179 KKVLVIGAG------EMGELVAKHLAEKG-----VKKITIANRTL--------ERAEELAKKLG-------AEAVALEEL 232 (414)
T ss_pred CeEEEEccc------HHHHHHHHHHHhCC-----CCEEEEEcCCH--------HHHHHHHHHhC-------CeeecHHHH
Confidence 456666631 22223344444442 35777777653 66777788776 223466999
Q ss_pred HHHHhcCcEEEEcCC--CCCCChHH-HHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHH
Q 012436 350 VKLLGGAVVGIHSMI--DEHFGISV-VEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPET 426 (464)
Q Consensus 350 ~~~l~~ad~~v~ps~--~e~~~~~~-~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~ 426 (464)
.+++..+|+++..+. ..-.+... -+++..-...+..|.+-+ .++ .+..++-.|+..-|.|++....++-+.
T Consensus 233 ~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavP-Rdi-e~~v~~l~~v~l~~iDDL~~iv~~n~~---- 306 (414)
T COG0373 233 LEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVP-RDV-EPEVGELPNVFLYTIDDLEEIVEENLE---- 306 (414)
T ss_pred HHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCC-CCC-CccccCcCCeEEEehhhHHHHHHHhHH----
Confidence 999999999887642 22223333 444454444577777655 444 331112233333367777666654333
Q ss_pred HHHHHHHHHHHH
Q 012436 427 ERLEMAAAARRR 438 (464)
Q Consensus 427 ~~~~~~~~~~~~ 438 (464)
.+++....+...
T Consensus 307 ~R~~~~~~ae~i 318 (414)
T COG0373 307 ARKEEAAKAEAI 318 (414)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 207
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=85.30 E-value=22 Score=32.32 Aligned_cols=106 Identities=12% Similarity=-0.012 Sum_probs=67.5
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCC--------CCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 012436 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSC--------RNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (464)
Q Consensus 272 i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~--------~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 343 (464)
++.+.....-.+.+.+++.++++++. ..+++..|.- ...-.++..+.+++.++++|++--..+...
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~------g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKEL------GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDT 101 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHc------CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCCh
Confidence 44454455566788899999998885 5567777721 111134667889999999998733333333
Q ss_pred CChhHHHHHHhcCcEEEEcCCCCCCChHHH-HHHHhCCcEEEeCC
Q 012436 344 LLYRDLVKLLGGAVVGIHSMIDEHFGISVV-EYMAAGAIPIAHNS 387 (464)
Q Consensus 344 ~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~-Ea~a~G~PvI~~~~ 387 (464)
.++..+...+|++-.+|. +.....++ ++...|+||+.++-
T Consensus 102 ---~~~~~l~~~vd~~kIga~-~~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 102 ---RDVEEVADYADMLQIGSR-NMQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred ---hhHHHHHHhCCEEEECcc-cccCHHHHHHHhcCCCcEEEeCC
Confidence 444444445899888874 22234444 44567999999874
No 208
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=84.79 E-value=30 Score=31.26 Aligned_cols=84 Identities=8% Similarity=-0.016 Sum_probs=52.2
Q ss_pred HHHhcCCC-Cc-EEEccCCChhHHHHHHhcCcEEEEcCCCC----CCChHHHHHHHhCCcEEEeCCCCCccceecccCCc
Q 012436 328 KSIELKVD-GN-VEFYKNLLYRDLVKLLGGAVVGIHSMIDE----HFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQ 401 (464)
Q Consensus 328 ~~~~~~l~-~~-v~~~g~~~~~~~~~~l~~ad~~v~ps~~e----~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~ 401 (464)
.+.++|++ ++ |-..|..+.+.=..++++.++-++-+... |+.-++--|..+|+|||.-+-+.. .
T Consensus 166 ~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~-~--------- 235 (256)
T TIGR00715 166 QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQT-I--------- 235 (256)
T ss_pred HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC-C---------
Confidence 55666664 23 44568888777778888765533333222 334457778899999999876532 1
Q ss_pred cceeecCCHHHHHHHHHHHH
Q 012436 402 QTGFLAQNAEEYADAIVKII 421 (464)
Q Consensus 402 ~~g~~~~~~~~la~~i~~l~ 421 (464)
...-.+.+.+++.+.+.+++
T Consensus 236 ~~~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 236 PGVAIFDDISQLNQFVARLL 255 (256)
T ss_pred CCCccCCCHHHHHHHHHHhc
Confidence 11133457888887776653
No 209
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=82.88 E-value=7.9 Score=30.21 Aligned_cols=72 Identities=13% Similarity=0.040 Sum_probs=39.4
Q ss_pred HHHHHHhcCcEEEEcC--CCCCCChH--HHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHH
Q 012436 348 DLVKLLGGAVVGIHSM--IDEHFGIS--VVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKII 421 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps--~~e~~~~~--~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~ 421 (464)
.-..++..||++|.-- .+--+... .--|.|+|+|.|.-.-... ..-+++ .....-..+.++++..+.+..++
T Consensus 65 RT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~-~HpLKE-vda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 65 RTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEEL-HHPLKE-VDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhc-cccHHH-HhHhhHhhhCCHHHHHHHHHHHh
Confidence 4456789999887541 11122211 2447789999999764432 122222 00122234457887777776554
No 210
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=82.35 E-value=40 Score=30.95 Aligned_cols=123 Identities=9% Similarity=0.017 Sum_probs=67.0
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIE 112 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (464)
+..+|++. ..+|-|=...+..|.+.|.+.||.|-|+.+.++..+....+.............+++-+.+.+.+...
T Consensus 50 ~a~viGIT---G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l- 125 (323)
T COG1703 50 NAHVIGIT---GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL- 125 (323)
T ss_pred CCcEEEec---CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc-
Confidence 44577773 33445677788999999999998888888877654444444322111112222222223233332211
Q ss_pred cccCcceehhhhchhhhHHHHHHhhhcCCcEEE-eccccccc-chhhhccCceEEEEee
Q 012436 113 ESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYF-DTSGYAFT-YPLARIFGCRVICYTH 169 (464)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~-~~~~~~~~-~~~~~~~~~p~v~~~h 169 (464)
...-...+.+.+.++...+|+|+ .+.+-.-. .-+.....+-+++...
T Consensus 126 ----------GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~p 174 (323)
T COG1703 126 ----------GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIP 174 (323)
T ss_pred ----------hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecC
Confidence 11223455666778889999776 34442211 1155566665555544
No 211
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=80.11 E-value=1.4 Score=34.74 Aligned_cols=44 Identities=18% Similarity=0.027 Sum_probs=29.6
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP 390 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~ 390 (464)
+++.+++..+|++|--|..+..--.+-.++.+|+|+|..-+|..
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 67888898999999877655544456778889999998766643
No 212
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=78.71 E-value=21 Score=28.00 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=36.7
Q ss_pred HHHHHHhcCcEEEEcC--CCCCCChH--HHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHH
Q 012436 348 DLVKLLGGAVVGIHSM--IDEHFGIS--VVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKI 420 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps--~~e~~~~~--~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l 420 (464)
.-..++..||+.|.-- .+--+... .--|.|+|+|.|.-.-... ..-+++ .....-..++++++..+.+..+
T Consensus 68 RT~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~-~HpLKE-vdaaA~avaetp~Qvv~iL~Yv 142 (144)
T TIGR03646 68 RTRKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEEL-IHPLKE-VDNKAQAVVETPEQAIETLKYI 142 (144)
T ss_pred HHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhc-cccHHH-HhHHHHHHhcCHHHHHHHHHHh
Confidence 3456788999887541 11112111 2347789999999763322 111221 0011223334677666666554
No 213
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=78.34 E-value=65 Score=31.38 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=74.0
Q ss_pred CCCChHHHHHHHHHHHHHhc--CCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCc
Q 012436 280 PEKAHPLQLEAFSVALRKLD--ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAV 357 (464)
Q Consensus 280 ~~K~~~~ll~a~~~l~~~~~--~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad 357 (464)
...|.+..++++........ ...++-.+.|+|..... ....+++++.+++|+..+..+.|..+-+|+.+ +.+|.
T Consensus 134 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~---~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~ 209 (406)
T cd01967 134 QSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIG---GDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAK 209 (406)
T ss_pred ccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccc---hhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCC
Confidence 34578878877765432210 00124578888874322 23588999999999988888888777788876 77777
Q ss_pred EEEEcCCCCCCChHHHHHHH--hCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHc
Q 012436 358 VGIHSMIDEHFGISVVEYMA--AGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 358 ~~v~ps~~e~~~~~~~Ea~a--~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~ 422 (464)
+.|..+.. ++....+.|. +|+|.+....-|. ++.+++.+.|.+++.
T Consensus 210 ~niv~~~~--~~~~~a~~L~~r~GiP~~~~~p~G~-----------------~~t~~~l~~l~~~lg 257 (406)
T cd01967 210 LNLVHCSR--SMNYLAREMEERYGIPYMEVNFYGF-----------------EDTSESLRKIAKFFG 257 (406)
T ss_pred EEEEEChH--HHHHHHHHHHHhhCCCEEEecCCcH-----------------HHHHHHHHHHHHHhC
Confidence 66654322 2344444443 6999876321111 245666666666665
No 214
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=77.89 E-value=59 Score=30.14 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=89.1
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCC-CCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHH
Q 012436 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCD-TSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRK 297 (464)
Q Consensus 219 ~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d-~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~ 297 (464)
.+.-|.++..+-..++.+.... .. +-++..++. .....-.+....++ -.+.-+.... .++.-+++++.+.
T Consensus 86 ~~~~dviv~i~tp~Aq~~~s~~--~~-iPVV~aavtd~v~a~Lv~~~~~pg-~NvTGvsD~~---~v~q~i~lik~~~-- 156 (322)
T COG2984 86 GDKPDVIVAIATPAAQALVSAT--KT-IPVVFAAVTDPVGAKLVKSLEQPG-GNVTGVSDLL---PVAQQIELIKALL-- 156 (322)
T ss_pred cCCCcEEEecCCHHHHHHHHhc--CC-CCEEEEccCchhhccCCccccCCC-CceeecCCcc---hHHHHHHHHHHhC--
Confidence 3677899999998888888764 22 444555543 22222111111122 2333333222 3555566665553
Q ss_pred hcCCCCCcEEE-EEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE-ccCCC--hhHHHHHHhcCcEEEEcCC---CCCCCh
Q 012436 298 LDADLPRPRLQ-FVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-YKNLL--YRDLVKLLGGAVVGIHSMI---DEHFGI 370 (464)
Q Consensus 298 ~~~~~p~~~l~-i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~--~~~~~~~l~~ad~~v~ps~---~e~~~~ 370 (464)
|+++=+ ++-+..+.......++++..++..|+. -+.. ..... +.-+..+....|++..|.. ..++..
T Consensus 157 -----Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~-vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~ 230 (322)
T COG2984 157 -----PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLE-VVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIES 230 (322)
T ss_pred -----CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCE-EEEEecCcccccHHHHHHhcCCCcEEEEecchHHHHHHHH
Confidence 566444 443333444567789999999999885 2222 22331 1223334467898888853 224455
Q ss_pred HHHHHHHhCCcEEEeCCC
Q 012436 371 SVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 371 ~~~Ea~a~G~PvI~~~~~ 388 (464)
.+.+|....+|+++++.+
T Consensus 231 l~~~a~~~kiPli~sd~~ 248 (322)
T COG2984 231 LLQVANKAKIPLIASDTS 248 (322)
T ss_pred HHHHHHHhCCCeecCCHH
Confidence 578999999999999844
No 215
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=77.28 E-value=9.9 Score=30.72 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=34.8
Q ss_pred cEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCC
Q 012436 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 337 ~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
.+.+.|+--...+.+.++.||++|.- .| .-+++|.+..|+|.|+--..
T Consensus 62 gl~id~y~f~psl~e~I~~AdlVIsH---AG-aGS~letL~l~KPlivVvNd 109 (170)
T KOG3349|consen 62 GLTIDGYDFSPSLTEDIRSADLVISH---AG-AGSCLETLRLGKPLIVVVND 109 (170)
T ss_pred CeEEEEEecCccHHHHHhhccEEEec---CC-cchHHHHHHcCCCEEEEeCh
Confidence 34444444347889999999998843 33 44899999999999886433
No 216
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=75.58 E-value=2.3 Score=34.11 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=19.3
Q ss_pred CCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 48 GGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
+|--.=...++++|+++| |+|.+.+.
T Consensus 9 ~Ghv~P~lala~~L~~rG--h~V~~~~~ 34 (139)
T PF03033_consen 9 RGHVYPFLALARALRRRG--HEVRLATP 34 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT---EEEEEET
T ss_pred hhHHHHHHHHHHHHhccC--CeEEEeec
Confidence 466667789999999999 56666664
No 217
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=75.54 E-value=26 Score=32.44 Aligned_cols=89 Identities=10% Similarity=-0.038 Sum_probs=52.8
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCC-CCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESP-DLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKW 110 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (464)
....+|++....-++ +......-.-++|.+.|. ++++.......+
T Consensus 28 ~~~~~VaI~~~veHp--aLd~~~~G~~~aLk~~G~~n~~i~~~na~~~-------------------------------- 73 (322)
T COG2984 28 ADQITVAITQFVEHP--ALDAAREGVKEALKDAGYKNVKIDYQNAQGD-------------------------------- 73 (322)
T ss_pred ccceeEEEEEeecch--hHHHHHHHHHHHHHhcCccCeEEEeecCCCC--------------------------------
Confidence 344457776544433 355566667788999996 444444443221
Q ss_pred cccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEee
Q 012436 111 IEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTH 169 (464)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h 169 (464)
........+.+...++|+++...........+.-.++|+|+.--
T Consensus 74 ---------------~~~a~~iarql~~~~~dviv~i~tp~Aq~~~s~~~~iPVV~aav 117 (322)
T COG2984 74 ---------------LGTAAQIARQLVGDKPDVIVAIATPAAQALVSATKTIPVVFAAV 117 (322)
T ss_pred ---------------hHHHHHHHHHhhcCCCcEEEecCCHHHHHHHHhcCCCCEEEEcc
Confidence 11133455667788999998655533333345567799998755
No 218
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=75.48 E-value=63 Score=29.26 Aligned_cols=104 Identities=12% Similarity=-0.014 Sum_probs=61.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEc--------CCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVG--------SCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 274 ~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G--------~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
+++....-...+.+++.++.++... .++...+ .+.....++-.+.+++.++++|++- +.-..+
T Consensus 28 ~IAGpc~ie~~~~~~~~A~~lk~~~------~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~---~t~~~d 98 (260)
T TIGR01361 28 VIAGPCSVESEEQIMETARFVKEAG------AKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPV---VTEVMD 98 (260)
T ss_pred EEEeCCccCCHHHHHHHHHHHHHHH------HHhccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCE---EEeeCC
Confidence 3444555567788888888877653 1222211 0011112355678999999998762 222233
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHH-HhCCcEEEeCC
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYM-AAGAIPIAHNS 387 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~ 387 (464)
.+++..+...+|++-.+|. +.....+++++ ..|+||+.+.-
T Consensus 99 ~~~~~~l~~~~d~lkI~s~-~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 99 PRDVEIVAEYADILQIGAR-NMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred hhhHHHHHhhCCEEEECcc-cccCHHHHHHHhcCCCcEEEeCC
Confidence 4555555556899988864 33344565555 56999999874
No 219
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=74.91 E-value=41 Score=26.80 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=40.3
Q ss_pred EEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceec
Q 012436 338 VEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVL 396 (464)
Q Consensus 338 v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~ 396 (464)
..+.|+--.+++.++...|.+.+.- -|-| +++.++..++|.|.........|.+.
T Consensus 48 l~v~~F~~~~kiQsli~darIVISH---aG~G-SIL~~~rl~kplIv~pr~s~y~elvD 102 (161)
T COG5017 48 LRVYGFDKEEKIQSLIHDARIVISH---AGEG-SILLLLRLDKPLIVVPRSSQYQELVD 102 (161)
T ss_pred cEEEeechHHHHHHHhhcceEEEec---cCcc-hHHHHhhcCCcEEEEECchhHHHhhh
Confidence 6788888889999999999976632 2323 78999999999998654432234443
No 220
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=74.72 E-value=40 Score=26.67 Aligned_cols=93 Identities=26% Similarity=0.207 Sum_probs=57.6
Q ss_pred cEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-----CHH
Q 012436 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-----NAE 411 (464)
Q Consensus 337 ~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-----~~~ 411 (464)
.|.+....+.+++.+.++.+|+++..+.. .+.-.+++.+ -++-.|++...|. ..+-.+ .....|+.+- ..+
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~-d~id~~-~a~~~gI~V~n~~g~~~~ 95 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGV-DNIDLE-AAKERGIPVTNVPGYNAE 95 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSC-TTB-HH-HHHHTTSEEEE-TTTTHH
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEccccc-CcccHH-HHhhCeEEEEEeCCcCCc
Confidence 68888888999999999999998865332 4677788888 7888888877766 333211 1134565542 444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012436 412 EYADAIVKIISMPETERLEMAAAARR 437 (464)
Q Consensus 412 ~la~~i~~l~~~~~~~~~~~~~~~~~ 437 (464)
+.|+.. .. ..+.+.++.+.+.+
T Consensus 96 aVAE~a---~~-T~e~~~~~~~~~~~ 117 (133)
T PF00389_consen 96 AVAEHA---GY-TDEARERMAEIAAE 117 (133)
T ss_dssp HHHHHH---TG-BHHHHHHHHHHHHH
T ss_pred chhccc---hh-HHHHHHHHHHHHHH
Confidence 555544 22 44444444444333
No 221
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=73.30 E-value=15 Score=30.40 Aligned_cols=85 Identities=14% Similarity=0.068 Sum_probs=47.3
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEE------EccCCCh-------hHHHHHHhcCcEEEEc---CCCCC
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE------FYKNLLY-------RDLVKLLGGAVVGIHS---MIDEH 367 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~------~~g~~~~-------~~~~~~l~~ad~~v~p---s~~e~ 367 (464)
..++.++|.--..+..+..+++++++.+.|.....- +...-|. +.=...+.+||++|.. -..+.
T Consensus 4 ~~~IYLAGP~F~~~~i~~~d~lkall~~~gf~~~~P~d~~~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~fr~~~ 83 (172)
T COG3613 4 KKKIYLAGPVFRPDEIELRDELKALLLEAGFEVLSPFDEAEPIAETGPNETAEKIYEADIKLIDQADIVLANLDPFRPDP 83 (172)
T ss_pred cceEEEecCcCCHHHHHHHHHHHHHHHHcCCeeeCcchhccCccccCccHHHHHHHHHHHHHHhhcCEEEEecCCCCCCC
Confidence 456777776433344456667777777765431111 1111110 1123467889987653 23344
Q ss_pred CChHHHH---HHHhCCcEEEeCCC
Q 012436 368 FGISVVE---YMAAGAIPIAHNSA 388 (464)
Q Consensus 368 ~~~~~~E---a~a~G~PvI~~~~~ 388 (464)
=+-+..| |.|.|+||++....
T Consensus 84 DsGTa~E~GYa~AlgKPv~~~~~d 107 (172)
T COG3613 84 DSGTAFELGYAIALGKPVYAYRKD 107 (172)
T ss_pred CCcchHHHHHHHHcCCceEEEeec
Confidence 4556666 67889999997643
No 222
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=73.27 E-value=42 Score=30.32 Aligned_cols=87 Identities=7% Similarity=0.012 Sum_probs=58.6
Q ss_pred CChHHHHHHHhCCcEEEeCCCC--CccceecccCCccceeecC-CH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hc
Q 012436 368 FGISVVEYMAAGAIPIAHNSAG--PKMDIVLEEDGQQTGFLAQ-NA--EEYADAIVKIISMPETERLEMAAAARRRA-AR 441 (464)
Q Consensus 368 ~~~~~~Ea~a~G~PvI~~~~~~--~~~~~v~~~~~~~~g~~~~-~~--~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~ 441 (464)
++..+.=-|+|+-.|+.....- ...+.+.+ ...-+-+. |- +++.++|+.+.+ ++++.+++++++++++ +.
T Consensus 157 ~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P---~~HYvPv~~d~sd~~l~~~i~~~~~-~~~~a~~Ia~~~~~~~~~~ 232 (256)
T smart00672 157 WSVRLKYILACDSVVLKVKPEYYEFFSRGLQP---WVHYWPIKSDLSCRELKEAVDWGNE-HDKKAQEIGKRGSEFIQQN 232 (256)
T ss_pred chhhHHHHHhcCceEEEeCCchhHHHHhcccC---ccceEEeeCCCchhhHHHHHHHHHh-CHHHHHHHHHHHHHHHHHH
Confidence 3334566788888777665321 11122222 22222222 43 449999999999 9999999999999999 77
Q ss_pred cCHHHHHHHHHHHHHHH
Q 012436 442 FSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 442 ~s~~~~~~~~~~~~~~~ 458 (464)
.+.+.+..-+..++.+.
T Consensus 233 L~~~~~~~Y~~~ll~ey 249 (256)
T smart00672 233 LSMEDVYDYMFHLLQEY 249 (256)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999888887777654
No 223
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=73.11 E-value=42 Score=29.27 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=61.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhc-CCCCcEEEccCCChhHHHHHHhcCcEEEE
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL-KVDGNVEFYKNLLYRDLVKLLGGAVVGIH 361 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ 361 (464)
+.+.+.+.+..+.+ ++.++.++...+. +..++...+.+..+++ |.. +..+-..+.++..+.+..||++++
T Consensus 16 ~~~~l~~~l~~~~~------~~~~i~~IptAs~-~~~~~~~~~~~a~~~l~G~~--~~~~~~~~~~~~~~~l~~ad~I~l 86 (212)
T cd03146 16 ALPAIDDLLLSLTK------ARPKVLFVPTASG-DRDEYTARFYAAFESLRGVE--VSHLHLFDTEDPLDALLEADVIYV 86 (212)
T ss_pred chHHHHHHHHHhcc------CCCeEEEECCCCC-CHHHHHHHHHHHHhhccCcE--EEEEeccCcccHHHHHhcCCEEEE
Confidence 45555555554431 2678899988765 3456777888888888 753 333332335677889999999999
Q ss_pred cCCCC----------CCChHHHHHHHhCCcEEEeCCC
Q 012436 362 SMIDE----------HFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 362 ps~~e----------~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
|--.. ++--.+-++...|+|++.+..|
T Consensus 87 ~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAG 123 (212)
T cd03146 87 GGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAG 123 (212)
T ss_pred CCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHh
Confidence 83110 1122244556679998887655
No 224
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=72.82 E-value=75 Score=28.90 Aligned_cols=125 Identities=12% Similarity=0.072 Sum_probs=76.0
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhcC
Q 012436 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGA 356 (464)
Q Consensus 280 ~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~a 356 (464)
+.+.++.+.++++..++.+- .+.+.+.-... .+.++..++-+.+.+.|. +.|.+. |...++++.++++..
T Consensus 104 ~~~~~~~~~~~i~~ak~~G~----~v~~~~~~a~~--~~~~~~~~~~~~~~~~g~-~~i~l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 104 HKHEFDEALPLIKAIKEKGY----EVFFNLMAISG--YSDEELLELLELVNEIKP-DVFYIVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred ccccHHHHHHHHHHHHHCCC----eEEEEEEeecC--CCHHHHHHHHHHHHhCCC-CEEEEecCCCCCCHHHHHHHHHHH
Confidence 34578888888888877631 33333333222 234555556666666763 466664 777888887777653
Q ss_pred ----c--EEEEcCCCCCCChH---HHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHc
Q 012436 357 ----V--VGIHSMIDEHFGIS---VVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 357 ----d--~~v~ps~~e~~~~~---~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~ 422 (464)
+ +-+.-..+..+|+. .++|+.+|.-.|-+...|..+ ..|- ...++++..+.....
T Consensus 177 ~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~---------~aGN--~~~E~~v~~l~~~~~ 240 (266)
T cd07944 177 RSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGR---------GAGN--LPTELLLDYLNNKFG 240 (266)
T ss_pred HHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCC---------CcCc--HHHHHHHHHHHHhhc
Confidence 2 33333446677766 488999999888887777632 1111 156777777766543
No 225
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=72.72 E-value=21 Score=29.43 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=49.4
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCC--CCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCR--NKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~--~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
+..+.++|. +...+...+..+.... +..+.+++... ...+.+..+..++.+.+.| ..+.+.
T Consensus 2 gl~i~~vGD-----~~~rv~~Sl~~~~~~~-----g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g--~~i~~~----- 64 (158)
T PF00185_consen 2 GLKIAYVGD-----GHNRVAHSLIELLAKF-----GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG--GKITIT----- 64 (158)
T ss_dssp TEEEEEESS-----TTSHHHHHHHHHHHHT-----TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT--TEEEEE-----
T ss_pred CCEEEEECC-----CCChHHHHHHHHHHHc-----CCEEEEECCCcccCCCCHHHHHHHHHHHHHhC--CCeEEE-----
Confidence 478999993 2233444444444444 77888888654 1223345666666666654 356665
Q ss_pred hHHHHHHhcCcEEEEcCCC
Q 012436 347 RDLVKLLGGAVVGIHSMID 365 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~ 365 (464)
+++.+.++.||++....+.
T Consensus 65 ~~~~e~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 65 DDIEEALKGADVVYTDRWQ 83 (158)
T ss_dssp SSHHHHHTT-SEEEEESSS
T ss_pred eCHHHhcCCCCEEEEcCcc
Confidence 5677889999998877665
No 226
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=72.34 E-value=23 Score=33.68 Aligned_cols=97 Identities=15% Similarity=-0.004 Sum_probs=60.6
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHH----------hcCCCCcEE
Q 012436 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI----------ELKVDGNVE 339 (464)
Q Consensus 270 ~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~----------~~~l~~~v~ 339 (464)
..+..++ .+.--+..++++++... ..+.+.+.++... ..+.+... +.| .-.++
T Consensus 185 ~~vslF~--Ye~~~l~~ll~~~~~~~-------~pv~llvp~g~~~-------~~~~~~~~~~~~~~g~~~~~g-~l~l~ 247 (374)
T PF10093_consen 185 LRVSLFC--YENAALASLLDAWAASP-------KPVHLLVPEGRAL-------NSLAAWLGDALLQAGDSWQRG-NLTLH 247 (374)
T ss_pred eEEEEEe--CCchHHHHHHHHHhcCC-------CCeEEEecCCccH-------HHHHHHhccccccCccccccC-CeEEE
Confidence 4444444 23333667777766331 2677777765432 33322221 111 12578
Q ss_pred EccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCC
Q 012436 340 FYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 340 ~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
+++++|+++..+++..||+.++= .|. |.+-|.-+|+|.|=.=.+
T Consensus 248 ~lPF~~Q~~yD~LLw~cD~NfVR--GED---SfVRAqwAgkPFvWhIYp 291 (374)
T PF10093_consen 248 VLPFVPQDDYDRLLWACDFNFVR--GED---SFVRAQWAGKPFVWHIYP 291 (374)
T ss_pred ECCCCCHHHHHHHHHhCccceEe--cch---HHHHHHHhCCCceEecCc
Confidence 89999999999999999986543 332 678899999999976433
No 227
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=70.75 E-value=40 Score=29.86 Aligned_cols=86 Identities=9% Similarity=0.050 Sum_probs=61.2
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC--ChhH
Q 012436 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL--LYRD 348 (464)
Q Consensus 271 ~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~ 348 (464)
+++++|-+...-|...+-+-+..++++. ++.|+|++........-.-++..+...+.|. ++.=+|.- ++.|
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~ky-----k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~--dviT~GNH~wd~~e 74 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKY-----KIDFVIVNGENAAGGFGITEKIYKELLEAGA--DVITLGNHTWDQKE 74 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhh-----cCcEEEEcCccccCCcCCCHHHHHHHHHhCC--CEEecccccccchH
Confidence 6899999999999999999999999987 7889999863211100011333333444453 46666644 6789
Q ss_pred HHHHHhcCcEEEEcC
Q 012436 349 LVKLLGGAVVGIHSM 363 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps 363 (464)
+.+++...+.+|-|.
T Consensus 75 i~~~i~~~~~ilRP~ 89 (266)
T COG1692 75 ILDFIDNADRILRPA 89 (266)
T ss_pred HHHHhhcccceeccC
Confidence 999999999999885
No 228
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=69.43 E-value=1.2e+02 Score=29.85 Aligned_cols=103 Identities=13% Similarity=0.060 Sum_probs=63.3
Q ss_pred CCCChHHHHHHHHH-HHHHhcCCCCCcEEEEEcCCCCCc--cHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC
Q 012436 280 PEKAHPLQLEAFSV-ALRKLDADLPRPRLQFVGSCRNKS--DEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA 356 (464)
Q Consensus 280 ~~K~~~~ll~a~~~-l~~~~~~~~p~~~l~i~G~~~~~~--~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a 356 (464)
...|.+..++++-. +..... ..++-.+.|+|..+..+ .....++++++.+++|+..+..+.+.-+.+|+.+ +.+|
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~-~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~-~~~A 208 (427)
T cd01971 131 NYAGHEIVLKAIIDQYVGQSE-EKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPESNGEELRS-IPKA 208 (427)
T ss_pred cccHHHHHHHHHHHHhccCCC-CCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCCCHHHHHh-cccC
Confidence 45788888877764 322110 01245688888532110 0122478999999999988888876666677764 5566
Q ss_pred cEEEEcCCCCCCChHHHHHH--HhCCcEEEeC
Q 012436 357 VVGIHSMIDEHFGISVVEYM--AAGAIPIAHN 386 (464)
Q Consensus 357 d~~v~ps~~e~~~~~~~Ea~--a~G~PvI~~~ 386 (464)
.+-+..+.. .+....+.| -+|+|.+..+
T Consensus 209 ~~niv~~~~--~g~~~a~~L~~~~giP~i~~~ 238 (427)
T cd01971 209 QFNLVLSPW--VGLEFAQHLEEKYGQPYIHSP 238 (427)
T ss_pred cEEEEEcHh--hHHHHHHHHHHHhCCceEecC
Confidence 665554322 245566666 4699988865
No 229
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=69.00 E-value=7.3 Score=30.89 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=30.6
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCC-ceEEEc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDL-DCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~-~v~~~~ 74 (464)
||++|+....+.++-..+-..++|+++.+.||++ .|..+.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 7899988877776556678889999999999773 544443
No 230
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=67.26 E-value=46 Score=29.20 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=54.4
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
.||+|+ -++.- |+..++..+..+.+.+. ++++.++++...-.+.+..+
T Consensus 3 vKiGii--KlGNi-g~s~~idl~lDErAdRe-dI~vrv~gsGaKm~pe~~~~---------------------------- 50 (277)
T PRK00994 3 VKIGII--KLGNI-GMSPVIDLLLDERADRE-DIDVRVVGSGAKMGPEEVEE---------------------------- 50 (277)
T ss_pred EEEEEE--Eeccc-chHHHHHHHHHhhhccc-CceEEEeccCCCCCHHHHHH----------------------------
Confidence 578887 34444 78888877778877773 57877777654222211110
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccc-h-----hhhccCceEEEEeeCCc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTY-P-----LARIFGCRVICYTHYPT 172 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~-~-----~~~~~~~p~v~~~h~p~ 172 (464)
.....+++++||+++..+..+..- | +.+..++|.|+....|.
T Consensus 51 ----------------~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 51 ----------------VVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred ----------------HHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCc
Confidence 112336788999887666544432 2 22345889988777655
No 231
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=66.90 E-value=76 Score=28.57 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=64.5
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC-----CChhHH
Q 012436 275 VAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN-----LLYRDL 349 (464)
Q Consensus 275 ~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-----~~~~~~ 349 (464)
+|.-....+-..+.+.+-++... ++-++.++...+. +...+.+...+..+++|.. .+..+.- .+.++.
T Consensus 4 iGG~~~~~~~~~i~~~~~~lag~-----~~~rI~~iptAS~-~~~~~~~~~~~~~~~lG~~-~v~~l~i~~r~~a~~~~~ 76 (250)
T TIGR02069 4 IGGAEDKVGDREILREFVSRAGG-----EDAIIVIITSASE-EPREVGERYITIFSRLGVK-EVKILDVREREDASDENA 76 (250)
T ss_pred EeCccccCChHHHHHHHHHHhCC-----CCceEEEEeCCCC-ChHHHHHHHHHHHHHcCCc-eeEEEecCChHHccCHHH
Confidence 44433333444466666444332 3557778775543 3445667777788888874 3444332 234567
Q ss_pred HHHHhcCcEEEEcC--------CCCCCCh--HHHHHHHhCCcEEEeCCCC
Q 012436 350 VKLLGGAVVGIHSM--------IDEHFGI--SVVEYMAAGAIPIAHNSAG 389 (464)
Q Consensus 350 ~~~l~~ad~~v~ps--------~~e~~~~--~~~Ea~a~G~PvI~~~~~~ 389 (464)
.+.+..||++++.- .....++ .+-++...|+|++.+..|.
T Consensus 77 ~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA 126 (250)
T TIGR02069 77 IALLSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGA 126 (250)
T ss_pred HHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHH
Confidence 78899999877652 1223332 3568888999888776553
No 232
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=66.61 E-value=56 Score=29.48 Aligned_cols=40 Identities=5% Similarity=0.132 Sum_probs=26.8
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
.++|||++.....-.. .-+..|+++|.+.| +|+++.+..+
T Consensus 3 ~~~M~ILltNDDGi~a----~Gi~aL~~~l~~~g---~V~VvAP~~~ 42 (257)
T PRK13932 3 DKKPHILVCNDDGIEG----EGIHVLAASMKKIG---RVTVVAPAEP 42 (257)
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHHHhCC---CEEEEcCCCC
Confidence 4569999877653222 34667788888776 5777777653
No 233
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=66.56 E-value=50 Score=28.41 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=26.3
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
|||++.....- ...-+..|+++|.+.| ++|++..+..+
T Consensus 1 M~ILlTNDDGi----~a~Gi~aL~~~L~~~g--~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDGI----DAPGIRALAKALSALG--HDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-T----TSHHHHHHHHHHTTTS--SEEEEEEESSS
T ss_pred CeEEEEcCCCC----CCHHHHHHHHHHHhcC--CeEEEEeCCCC
Confidence 89999876532 3346778899998887 67777777653
No 234
>PLN02342 ornithine carbamoyltransferase
Probab=66.15 E-value=43 Score=31.78 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++.+...+ +.-+.+||+|+- -..+++..++..+...| .++.+.++..
T Consensus 176 tQaLaDl~Ti~e~~---G~l~glkva~vG-------D~~nva~Sli~~~~~~G--~~v~~~~P~~ 228 (348)
T PLN02342 176 CQIMADALTIIEHI---GRLEGTKVVYVG-------DGNNIVHSWLLLAAVLP--FHFVCACPKG 228 (348)
T ss_pred HHHHHHHHHHHHHh---CCcCCCEEEEEC-------CCchhHHHHHHHHHHcC--CEEEEECCcc
Confidence 68999998887665 345679999972 22468888999999998 8888887754
No 235
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=66.04 E-value=41 Score=32.05 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=47.0
Q ss_pred hHHHHHHhcCcEEEEc--CCCCCCCh-HHHHHHHhCCcEEEeC--CCCCccceecccCCccceeec---CCHHHHHHHHH
Q 012436 347 RDLVKLLGGAVVGIHS--MIDEHFGI-SVVEYMAAGAIPIAHN--SAGPKMDIVLEEDGQQTGFLA---QNAEEYADAIV 418 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~p--s~~e~~~~-~~~Ea~a~G~PvI~~~--~~~~~~~~v~~~~~~~~g~~~---~~~~~la~~i~ 418 (464)
++..++++...+.+.. |..+++-. .+.+|+..|+-+|.-. .... ++++.+ +.-+.+ +++++||+-|.
T Consensus 219 ~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~-~~~~P~----~SfI~~~df~s~~~La~yl~ 293 (349)
T PF00852_consen 219 DCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNY-EEFAPP----NSFIHVDDFKSPKELADYLK 293 (349)
T ss_dssp S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTH-HHHS-G----GGSEEGGGSSSHHHHHHHHH
T ss_pred ccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEeccc-ccCCCC----CCccchhcCCCHHHHHHHHH
Confidence 4577788888877754 22333322 4789999999666554 3333 444433 222333 38999999999
Q ss_pred HHHcCCHHHHHHH
Q 012436 419 KIISMPETERLEM 431 (464)
Q Consensus 419 ~l~~~~~~~~~~~ 431 (464)
.+.+ |++.+.+.
T Consensus 294 ~l~~-n~~~Y~~y 305 (349)
T PF00852_consen 294 YLDK-NDELYNKY 305 (349)
T ss_dssp HHHT--HHHHH--
T ss_pred HHhc-CHHHHhhh
Confidence 9999 98877654
No 236
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=64.91 E-value=26 Score=34.01 Aligned_cols=86 Identities=8% Similarity=0.037 Sum_probs=59.3
Q ss_pred ChHHHHHHHhCCcEEEeCCCC--CccceecccCCccceeec-C--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hcc
Q 012436 369 GISVVEYMAAGAIPIAHNSAG--PKMDIVLEEDGQQTGFLA-Q--NAEEYADAIVKIISMPETERLEMAAAARRRA-ARF 442 (464)
Q Consensus 369 ~~~~~Ea~a~G~PvI~~~~~~--~~~~~v~~~~~~~~g~~~-~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~ 442 (464)
+..+---|+||-.|+..+..- ...+.+.+ ...-+-+ . +.+++.++|+.+.+ ++++.++++++|++++ +..
T Consensus 227 S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P---~vHYVPV~~~~d~sdL~~~v~w~~~-~~~~A~~IA~~g~~f~~~~L 302 (395)
T PF05686_consen 227 SGRLKYLLACNSVVLKVKSPYYEFFYRALKP---WVHYVPVKRDDDLSDLEEKVEWLNA-HDDEAQRIAENGQRFAREYL 302 (395)
T ss_pred ehhHHHHHcCCceEEEeCCcHHHHHHhhhcc---cccEEEeccccchhhHHHHhhhccc-ChHHHHHHHHHHHHHHHHHh
Confidence 334555688888777754331 11112223 2332322 2 78999999999998 9999999999999999 889
Q ss_pred CHHHHHHHHHHHHHHH
Q 012436 443 SEQRFYEDFKAAIRPI 458 (464)
Q Consensus 443 s~~~~~~~~~~~~~~~ 458 (464)
+.+.+..-+..++.+.
T Consensus 303 ~~~~~~~Y~~~LL~eY 318 (395)
T PF05686_consen 303 TMEDVYCYWRRLLLEY 318 (395)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9998887776666554
No 237
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=64.57 E-value=55 Score=26.45 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC----c-EEEEcCCCCCCChHHHHHHH-hCCcEEE---eCCCCC
Q 012436 320 ERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----V-VGIHSMIDEHFGISVVEYMA-AGAIPIA---HNSAGP 390 (464)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a----d-~~v~ps~~e~~~~~~~Ea~a-~G~PvI~---~~~~~~ 390 (464)
+..+.+++.++++|+ .+.|.-.-...++.+.++++ | +.+.|--+...+..+.+|++ .++|+|= |+.-.-
T Consensus 30 ~i~~~~~~~a~~~g~--~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aR 107 (146)
T PRK05395 30 DIEALLEEEAAELGV--ELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIHAR 107 (146)
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecCCcccc
Confidence 344555556666554 36666555556677776655 4 56667667778889999986 5889985 333222
Q ss_pred ccce-----ecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 391 KMDI-----VLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 391 ~~~~-----v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
+++ +.+ ...|.++. -.+...-++..+++
T Consensus 108 -E~fR~~S~is~---~a~G~I~G~G~~gY~lAl~al~~ 141 (146)
T PRK05395 108 -EEFRHHSYISD---VAVGVICGFGADGYLLALEALAE 141 (146)
T ss_pred -ccccccccccc---cceEEEeeCCHHhHHHHHHHHHH
Confidence 322 333 34566665 67777777766654
No 238
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=61.27 E-value=46 Score=32.18 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+-.++-....-+.+||+|+-.+-...|-..+++..++..+...| .+|.+.++..
T Consensus 166 tQaLaDl~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG--~~v~~~~P~~ 228 (395)
T PRK07200 166 TQSMADLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFG--MDVTLAHPEG 228 (395)
T ss_pred HHHHHHHHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcC--CEEEEECCCc
Confidence 69999999887776433334667999875433222345788889999999999 8888888753
No 239
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=61.17 E-value=86 Score=30.94 Aligned_cols=116 Identities=15% Similarity=0.021 Sum_probs=74.0
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC--------hhHHH
Q 012436 279 RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL--------YRDLV 350 (464)
Q Consensus 279 ~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~--------~~~~~ 350 (464)
....+++.++.+.... ....+.-|.|-..++ +.+.+.+.+.| +.|.|.-+ .....
T Consensus 58 ~syl~i~~ii~~a~~~---------gadai~pGygflsen----~~fae~~~~~g----l~fiGP~~~~i~~mgdK~~ar 120 (449)
T COG0439 58 DSYLNIDAIIAAAEET---------GADAIHPGYGFLSEN----AAFAEACAEAG----LTFIGPSAEAIRRMGDKITAR 120 (449)
T ss_pred hhhhhHHHHHHHHHhc---------CCceEcccchhhhCC----HHHHHHHHHcC----CeeeCcCHHHHHHhhhHHHHH
Confidence 4456777777776665 667777787722222 55666666654 67777542 24556
Q ss_pred HHHhcCcEEEEcCCCCCCChHHHH----HHHhCCcEEEeCCCCCccceecccCCccce-eecCCHHHHHHHHHHHHc
Q 012436 351 KLLGGAVVGIHSMIDEHFGISVVE----YMAAGAIPIAHNSAGPKMDIVLEEDGQQTG-FLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 351 ~~l~~ad~~v~ps~~e~~~~~~~E----a~a~G~PvI~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~la~~i~~l~~ 422 (464)
+.++++-+-+.|.+ ++.....-| |-..|-|||.=...|. |..| .++.+.+++.+++..+..
T Consensus 121 ~~~~~aGVP~vpgs-~~~~~~~ee~~~~a~~iGyPVivKa~~Gg----------Gg~G~r~v~~~~el~~a~~~~~~ 186 (449)
T COG0439 121 RLMAKAGVPVVPGS-DGAVADNEEALAIAEEIGYPVIVKAAAGG----------GGRGMRVVRNEEELEAAFEAARG 186 (449)
T ss_pred HHHHHcCCCcCCCC-CCCcCCHHHHHHHHHHcCCCEEEEECCCC----------CcccEEEECCHHHHHHHHHHHHH
Confidence 67788888777754 433222223 3345889998766554 4555 566799999999988765
No 240
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=61.12 E-value=1.3e+02 Score=27.15 Aligned_cols=120 Identities=15% Similarity=0.173 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE---ccCCChhHHHHHHhc----
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF---YKNLLYRDLVKLLGG---- 355 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~---~g~~~~~~~~~~l~~---- 355 (464)
.++.++++++.+++.+. .+.+.+........+.++..++-+.+.++|. +.|.+ .|...++++.++++.
T Consensus 113 ~~~~~~~~i~~a~~~G~----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 113 DLENAEEAIEAAKEAGL----EVEGSLEDAFGCKTDPEYVLEVAKALEEAGA-DEISLKDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred HHHHHHHHHHHHHHCCC----eEEEEEEeecCCCCCHHHHHHHHHHHHHcCC-CEEEechhcCCcCHHHHHHHHHHHHHh
Confidence 56777777777776542 3444442222101344666777777777774 45665 477788887777665
Q ss_pred ---CcEEEEcCCCCCCChH---HHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHH
Q 012436 356 ---AVVGIHSMIDEHFGIS---VVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKI 420 (464)
Q Consensus 356 ---ad~~v~ps~~e~~~~~---~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l 420 (464)
..+.++. +...|+. .++|+.+|.-.|-+...|.. + .+|- .+.++++..+...
T Consensus 188 ~~~~~~~~H~--Hn~~gla~an~laA~~aG~~~id~s~~G~G-~--------~~Gn--~~~e~~~~~l~~~ 245 (265)
T cd03174 188 LPDVPLGLHT--HNTLGLAVANSLAALEAGADRVDGSVNGLG-E--------RAGN--AATEDLVAALEGL 245 (265)
T ss_pred CCCCeEEEEe--CCCCChHHHHHHHHHHcCCCEEEecccccc-c--------cccC--ccHHHHHHHHHhc
Confidence 2244444 5555655 58999999988877777662 1 1111 1566777666654
No 241
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=61.10 E-value=1e+02 Score=28.03 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhcC---
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGA--- 356 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~a--- 356 (464)
.++.+.++.+..++. ..++.+........+.++..++-+.+.++|. +.|.+. |...++++.++++..
T Consensus 112 ~~~~~~~~i~~a~~~------G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~i~l~DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 112 VLERAVEAVEYAKSH------GLDVEFSAEDATRTDLDFLIEVVEAAIEAGA-TTINIPDTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred HHHHHHHHHHHHHHc------CCeEEEeeecCCCCCHHHHHHHHHHHHHcCC-CEEEECCCCCCCCHHHHHHHHHHHHHh
Confidence 456666677666665 3444443322222345666666666677774 456664 677777777666542
Q ss_pred --c--EEEEcCCCCCCChH---HHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHH
Q 012436 357 --V--VGIHSMIDEHFGIS---VVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKI 420 (464)
Q Consensus 357 --d--~~v~ps~~e~~~~~---~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l 420 (464)
+ +-+.-..+..+|+. .++|+.+|.-.|-+...|.. + ..|- ...++++..+...
T Consensus 185 ~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG-~--------~aGN--~~tE~lv~~L~~~ 244 (268)
T cd07940 185 VPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG-E--------RAGN--AALEEVVMALKTR 244 (268)
T ss_pred CCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccc-c--------cccc--ccHHHHHHHHHhc
Confidence 2 44444446667766 48999999998888777762 1 1221 1566777666655
No 242
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=60.61 E-value=1e+02 Score=29.08 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHh------hhc---------ccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 11 VITAVLASILILA------SHV---------HNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 11 ~~~~~~~~~~~~~------~~~---------~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
++.-+++++++++ .|. +|..-++..+|+++.+..... ........+.+++.+.| +++.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LgY~Pn~~Ar~t~~Igvv~p~~~~~-f~~~~~~gi~~aa~~~G--~~l~i~~~ 84 (343)
T PRK10936 8 LLSLFLLSLTAFAAANLLTWHLAQRTSLQYSPLLKAKKAWKLCALYPHLKDS-YWLSVNYGMVEEAKRLG--VDLKVLEA 84 (343)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhcccccccccccCCCeEEEEEecCCCch-HHHHHHHHHHHHHHHhC--CEEEEEcC
Confidence 4555667777762 122 666666788999998876544 45556666677777777 66666543
No 243
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=60.25 E-value=55 Score=28.29 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=22.1
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEE
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~ 73 (464)
|||+++.. |....+..+.+++.+.+..+++.+.
T Consensus 2 ~ki~vl~s------g~gs~~~~ll~~~~~~~~~~~I~~v 34 (200)
T PRK05647 2 KRIVVLAS------GNGSNLQAIIDACAAGQLPAEIVAV 34 (200)
T ss_pred ceEEEEEc------CCChhHHHHHHHHHcCCCCcEEEEE
Confidence 88998755 3345566778888877655665554
No 244
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=59.82 E-value=19 Score=31.98 Aligned_cols=63 Identities=14% Similarity=-0.048 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCc--EEEccCCChhHHHHHHhcC--cEEEEc-CCCC-CCChHHHHHHHhCCcEEEeCCC
Q 012436 326 KDKSIELKVDGN--VEFYKNLLYRDLVKLLGGA--VVGIHS-MIDE-HFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 326 ~~~~~~~~l~~~--v~~~g~~~~~~~~~~l~~a--d~~v~p-s~~e-~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
...+.++++++. |-..|..+.+.=..++.+. |++|.= |... ++--++-=|...|+|||.-.-+
T Consensus 163 ~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 163 LAKCEDLGVPPARIIAMRGPFSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHhcCCChhhEEEecCCcChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 334445555432 3345777777777777765 555542 2222 4445577888999999997755
No 245
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=59.50 E-value=7 Score=31.91 Aligned_cols=38 Identities=5% Similarity=0.143 Sum_probs=28.8
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
|||+++..+....|=.+..+..+++.+.+.| +++.++.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~ 38 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVID 38 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEe
Confidence 8999998888766677788888888888888 5555544
No 246
>PRK04531 acetylglutamate kinase; Provisional
Probab=58.54 E-value=33 Score=33.25 Aligned_cols=54 Identities=11% Similarity=-0.018 Sum_probs=33.2
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEE-EEcCCCCCccHHHHHHHHHHHHhcCCCCcE
Q 012436 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQ-FVGSCRNKSDEERLQSLKDKSIELKVDGNV 338 (464)
Q Consensus 270 ~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~-i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v 338 (464)
+.++-+|.-.-....+.+++.+..+.+. ..+++ +.|+| .++.+..++.|++...
T Consensus 38 ~~VIKiGG~~l~~~~~~l~~dla~L~~~------G~~~VlVHGgg---------pqI~~~l~~~gie~~~ 92 (398)
T PRK04531 38 FAVIKVGGAVLRDDLEALASSLSFLQEV------GLTPIVVHGAG---------PQLDAELDAAGIEKET 92 (398)
T ss_pred EEEEEEChHHhhcCHHHHHHHHHHHHHC------CCcEEEEECCC---------HHHHHHHHHcCCCcEE
Confidence 4555555432223467788888877665 34444 44555 4677888888887543
No 247
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=57.66 E-value=38 Score=25.40 Aligned_cols=74 Identities=11% Similarity=-0.035 Sum_probs=45.5
Q ss_pred EEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChH-HHH-HHHhCCcEEE
Q 012436 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGIS-VVE-YMAAGAIPIA 384 (464)
Q Consensus 307 l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~-~~E-a~a~G~PvI~ 384 (464)
++++|.|- ...-..+.+++.+++.|++ +.+. ..+..++.+....+|+++.... -.+-.. +-| +-..|+||.+
T Consensus 4 ll~C~~Ga--SSs~la~km~~~a~~~gi~--~~i~-a~~~~e~~~~~~~~Dvill~PQ-v~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 4 LVLCAGGG--TSGLLANALNKGAKERGVP--LEAA-AGAYGSHYDMIPDYDLVILAPQ-MASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred EEECCCCC--CHHHHHHHHHHHHHHCCCc--EEEE-EeeHHHHHHhccCCCEEEEcCh-HHHHHHHHHHHhhhcCCCEEE
Confidence 34455552 2335668899999998885 4333 3345889999999998776531 111111 222 3345889988
Q ss_pred eC
Q 012436 385 HN 386 (464)
Q Consensus 385 ~~ 386 (464)
.+
T Consensus 78 I~ 79 (99)
T cd05565 78 TT 79 (99)
T ss_pred eC
Confidence 76
No 248
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=57.38 E-value=39 Score=30.38 Aligned_cols=53 Identities=9% Similarity=-0.086 Sum_probs=34.0
Q ss_pred EEEccCCChhHHHHHHhcCc--EEEEc-CCCCCCChHHHHHHHhCCcEEEeCCCCC
Q 012436 338 VEFYKNLLYRDLVKLLGGAV--VGIHS-MIDEHFGISVVEYMAAGAIPIAHNSAGP 390 (464)
Q Consensus 338 v~~~g~~~~~~~~~~l~~ad--~~v~p-s~~e~~~~~~~Ea~a~G~PvI~~~~~~~ 390 (464)
+-..|..+.+.=..++++.. ++|.= |...|+.-++--|..+|+|||.-.-+..
T Consensus 175 ia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~ 230 (249)
T PF02571_consen 175 IAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPPE 230 (249)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCC
Confidence 44557777776667777644 44432 2222555667888999999999875533
No 249
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=57.26 E-value=23 Score=32.95 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=54.6
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEE
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPI 383 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI 383 (464)
+.-=+++|.-.........+.+++++++.|....+...|.++.+.+..+ ..|++|..+..+ +++.++-..-+|||
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf--~iD~fV~~aCPr---~sidd~~~f~kPvl 287 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNL--DFDAYVNTACPR---IAIDDYARFKKPVL 287 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcC--CcCEEEEccCCC---cccccHhhCCCccc
Confidence 4455677764444456777889999999998877888999999999766 599999875432 23445555566666
Q ss_pred Ee
Q 012436 384 AH 385 (464)
Q Consensus 384 ~~ 385 (464)
+.
T Consensus 288 TP 289 (308)
T TIGR03682 288 TP 289 (308)
T ss_pred CH
Confidence 53
No 250
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=57.17 E-value=98 Score=28.05 Aligned_cols=92 Identities=12% Similarity=0.015 Sum_probs=52.3
Q ss_pred CChhHHHHHHhcCcEEEEcC-CCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHH
Q 012436 344 LLYRDLVKLLGGAVVGIHSM-IDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKII 421 (464)
Q Consensus 344 ~~~~~~~~~l~~ad~~v~ps-~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~ 421 (464)
.+...-..-++.||+++.-. ..|++=-.+++.. -+.+++....++. .+--.. ...-|+-+ +...+++.|.+.+
T Consensus 41 ~~~p~d~~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~-~~~~~~---dPH~Wldp~n~~~~a~~I~~~L 115 (264)
T cd01020 41 EPTPTDAAKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGH-DDKEGD---NPHLWYDPETMSKVANALADAL 115 (264)
T ss_pred CCCHHHHHHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeecccc-cCCCCC---CCceecCHhHHHHHHHHHHHHH
Confidence 34445567788999888754 3455444455544 3555665543332 100000 12235544 6667777776666
Q ss_pred c-CCHHHHHHHHHHHHHHHH
Q 012436 422 S-MPETERLEMAAAARRRAA 440 (464)
Q Consensus 422 ~-~~~~~~~~~~~~~~~~~~ 440 (464)
. .||+......+|+.++.+
T Consensus 116 ~~~dP~~~~~y~~N~~~~~~ 135 (264)
T cd01020 116 VKADPDNKKYYQANAKKFVA 135 (264)
T ss_pred HHhCcccHHHHHHHHHHHHH
Confidence 4 377777777777777663
No 251
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=56.85 E-value=1.8e+02 Score=27.56 Aligned_cols=133 Identities=12% Similarity=0.010 Sum_probs=66.0
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC----ChhHHH----HHHhcCcEEEEcC--CCCCCChHHH
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL----LYRDLV----KLLGGAVVGIHSM--IDEHFGISVV 373 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~----~~~~~~----~~l~~ad~~v~ps--~~e~~~~~~~ 373 (464)
+-++.++|.|. .-+..-+...+.|. .++.+.... +.+++. ++...+|+.+..| .....|....
T Consensus 174 ~k~vLvIGaGe------m~~l~a~~L~~~g~-~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 174 KASLLFIGYSE------INRKVAYYLQRQGY-SRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred CCEEEEEcccH------HHHHHHHHHHHcCC-CEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 55777777763 22333333334443 244444322 334443 6678999999863 3334454445
Q ss_pred HHHHhCCcEEEeCCCCCcccee--cccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHH
Q 012436 374 EYMAAGAIPIAHNSAGPKMDIV--LEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDF 451 (464)
Q Consensus 374 Ea~a~G~PvI~~~~~~~~~~~v--~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 451 (464)
|.+.--.+-+.-|..-+ .++- .. ..+..++ |.|++.+.+.+=+. .+++....+...+ +..+.++
T Consensus 247 ~~~~~~~~r~~iDLAvP-RdId~v~~---~~~v~Ly-~iDdL~~i~~~n~~----~R~~~~~~ae~iI-----~~~~~~~ 312 (338)
T PRK00676 247 ESLADIPDRIVFDFNVP-RTFPWSET---PFPHRYL-DMDFISEWVQKHLQ----CRKEVNNKHKLSL-----REAAYKQ 312 (338)
T ss_pred HHHhhccCcEEEEecCC-CCCccccc---cCCcEEE-EhHHHHHHHHHHHH----HHHHHHHHHHHHH-----HHHHHHH
Confidence 55442221345555433 4442 11 2222333 77787777765333 4455555555444 3444555
Q ss_pred HHHHHH
Q 012436 452 KAAIRP 457 (464)
Q Consensus 452 ~~~~~~ 457 (464)
.+.|++
T Consensus 313 ~~~~~~ 318 (338)
T PRK00676 313 WESYEK 318 (338)
T ss_pred HHHHHH
Confidence 555544
No 252
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=56.67 E-value=1e+02 Score=27.66 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=57.0
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||++.....- ...-+..|+++|. .+ .+|++..++.+.+.- ...+.+.++.++..+..+.|.
T Consensus 1 mrILlTNDDGi----~a~Gi~aL~~al~-~~--~dV~VVAP~~~qSg~--------s~slTl~~Plr~~~~~~~~~a--- 62 (252)
T COG0496 1 MRILLTNDDGI----HAPGIRALARALR-EG--ADVTVVAPDREQSGA--------SHSLTLHEPLRVRQVDNGAYA--- 62 (252)
T ss_pred CeEEEecCCcc----CCHHHHHHHHHHh-hC--CCEEEEccCCCCccc--------ccccccccCceeeEeccceEE---
Confidence 78998776543 2334566778887 55 577787776532221 113344444444333332221
Q ss_pred cCcceehhhhc-hhhhHHHHHHh-hhcCCcEEEecccccc----------cchh---hhccCceEEEEee
Q 012436 115 TYPRFTMIGQS-FGSVYLSWEAL-CKFTPLYYFDTSGYAF----------TYPL---ARIFGCRVICYTH 169 (464)
Q Consensus 115 ~~~~~~~~~~~-~~~~~~~~~~l-~~~~~Dvv~~~~~~~~----------~~~~---~~~~~~p~v~~~h 169 (464)
.... ..+.......+ ++.+||+|++-.+... .... +...|+|-|...+
T Consensus 63 -------v~GTPaDCV~lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~ 125 (252)
T COG0496 63 -------VNGTPADCVILGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISL 125 (252)
T ss_pred -------ecCChHHHHHHHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeee
Confidence 1111 12344444444 4567999985222211 1112 2278999888766
No 253
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=56.47 E-value=1.6e+02 Score=27.04 Aligned_cols=94 Identities=12% Similarity=-0.059 Sum_probs=57.9
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHH
Q 012436 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVK 351 (464)
Q Consensus 272 i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~ 351 (464)
++|.| ...-|=|.+++++- .+.. ++.++++....+ ++.++ .+ +|.-....+..++..
T Consensus 4 ~GyyG--~~N~GDe~~l~~~l--~~l~----~~~~~~v~s~~p--------~~~~~---~~----~v~~~~r~~~~~~~~ 60 (298)
T TIGR03609 4 CGYYG--FGNLGDEALLAALL--RELP----PGVEPTVLSNDP--------AETAK---LY----GVEAVNRRSLLAVLR 60 (298)
T ss_pred EEecC--CCCcchHHHHHHHH--HhcC----CCCeEEEecCCh--------HHHHh---hc----CceEEccCCHHHHHH
Confidence 34444 45667788888873 2222 578888887654 22222 22 345555666678899
Q ss_pred HHhcCcEEEEcC---CCCCCCh--------HHHHHHHhCCcEEEeCCC
Q 012436 352 LLGGAVVGIHSM---IDEHFGI--------SVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 352 ~l~~ad~~v~ps---~~e~~~~--------~~~Ea~a~G~PvI~~~~~ 388 (464)
.+..+|++|... ..+..+. ...-|..+|+|++....+
T Consensus 61 ~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 61 ALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQG 108 (298)
T ss_pred HHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecc
Confidence 999999998763 2222221 123456689999887544
No 254
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=56.26 E-value=1e+02 Score=26.41 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=23.5
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
|||+++.. |....+..+++++.+.+...++..+.+
T Consensus 1 ~riail~s------g~gs~~~~ll~~~~~~~l~~~I~~vi~ 35 (190)
T TIGR00639 1 KRIVVLIS------GNGSNLQAIIDACKEGKIPASVVLVIS 35 (190)
T ss_pred CeEEEEEc------CCChhHHHHHHHHHcCCCCceEEEEEE
Confidence 57887654 455566788888888766566665433
No 255
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=55.76 E-value=62 Score=27.36 Aligned_cols=36 Identities=14% Similarity=0.377 Sum_probs=24.4
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
|||+|+.. |.......+.+++.+.+++++++...+.
T Consensus 1 mrI~~~~S------g~~~~~~~~l~~l~~~~~~~~iv~Vit~ 36 (181)
T PF00551_consen 1 MRIVFFGS------GSGSFLKALLEALKARGHNVEIVLVITN 36 (181)
T ss_dssp EEEEEEES------SSSHHHHHHHHHHHTTSSEEEEEEEEES
T ss_pred CEEEEEEc------CCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence 79998754 3336677888999999876555444433
No 256
>PRK07742 phosphate butyryltransferase; Validated
Probab=55.71 E-value=1.7e+02 Score=27.09 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=49.2
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCC--CCcEEEccCCC
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV--DGNVEFYKNLL 345 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~ 345 (464)
++.+|++... .=+.++++.....+++ ..+++++|+. +.+++.++++++ .+++.++..-+
T Consensus 14 ~~~ri~~~~~-----~d~~vl~Aa~~a~~e~-----~~~~iLvG~~---------~~I~~~~~~~~l~~~~~~~Ii~~~~ 74 (299)
T PRK07742 14 PKKTVAVAVA-----EDEEVIEAVAKAIELQ-----LARFRLYGNQ---------EKIMGMLQEHGLQTSEHIEIIHAQS 74 (299)
T ss_pred CCCeEEEeCC-----CCHHHHHHHHHHHHcC-----CceEEEECCH---------HHHHHHHHHCCCCCCCCcEEECCCC
Confidence 3356777653 1256678887777665 5899999974 577778888776 44677765543
Q ss_pred hhH----HHHHHh--cCcEEEEc
Q 012436 346 YRD----LVKLLG--GAVVGIHS 362 (464)
Q Consensus 346 ~~~----~~~~l~--~ad~~v~p 362 (464)
.++ -..+.+ .+|.++..
T Consensus 75 ~~~s~~~a~~lV~~G~aD~lvsG 97 (299)
T PRK07742 75 SAEAAELAVKAVRNGEADVLMKG 97 (299)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEC
Confidence 233 134555 79988854
No 257
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=55.63 E-value=1e+02 Score=28.68 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.++++..+...+ +.-+.+||+++-. ..+++..++..+...| ++|.+..+..
T Consensus 130 tQaL~Dl~Ti~e~~---g~l~g~~v~~vGd-------~~~v~~Sl~~~l~~~g--~~v~~~~P~~ 182 (304)
T TIGR00658 130 CQALADLLTIIEHF---GKLKGVKVVYVGD-------GNNVCNSLMLAGAKLG--MDVVVATPEG 182 (304)
T ss_pred HHHHHHHHHHHHHh---CCCCCcEEEEEeC-------CCchHHHHHHHHHHcC--CEEEEECCch
Confidence 69999998887665 3356789998832 2468888899999988 7888877654
No 258
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=55.54 E-value=63 Score=27.33 Aligned_cols=47 Identities=19% Similarity=0.062 Sum_probs=32.5
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChH--HHHHHH------hCCcEEEeCCCCCcccee
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGIS--VVEYMA------AGAIPIAHNSAGPKMDIV 395 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~--~~Ea~a------~G~PvI~~~~~~~~~~~v 395 (464)
+....++..+|++|.- ..|+|+- ++|+++ ..+|++..+..+.+..++
T Consensus 88 ~Rk~~m~~~sda~I~l--PGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~ 142 (178)
T TIGR00730 88 ERKAMMAELADAFIAM--PGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLV 142 (178)
T ss_pred HHHHHHHHhCCEEEEc--CCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHH
Confidence 4555677889987654 2666655 688886 499999998766654443
No 259
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=55.31 E-value=1.2e+02 Score=29.39 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhc----C
Q 012436 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGG----A 356 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~----a 356 (464)
++.+.++++..++. ...+.+......+.+.++..++-+.+.+.|. +.|.+. |...+.++.++++. .
T Consensus 115 l~~~~~~v~~a~~~------G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga-~~I~l~DT~G~~~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 115 LERMVEAVEYAKDH------GLYVSFSAEDASRTDLDFLIEFAKAAEEAGA-DRVRFCDTVGILDPFTMYELVKELVEAV 187 (378)
T ss_pred HHHHHHHHHHHHHC------CCeEEEEeccCCCCCHHHHHHHHHHHHhCCC-CEEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 34444455554443 3333333322223345566666666666663 355543 66666666655543 2
Q ss_pred cEEEEcCCCCCCChH---HHHHHHhCCcEEEeCCCCC
Q 012436 357 VVGIHSMIDEHFGIS---VVEYMAAGAIPIAHNSAGP 390 (464)
Q Consensus 357 d~~v~ps~~e~~~~~---~~Ea~a~G~PvI~~~~~~~ 390 (464)
++-+--..+..+|+. .++|+.+|.-.|-+...|.
T Consensus 188 ~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~Gl 224 (378)
T PRK11858 188 DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGL 224 (378)
T ss_pred CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccc
Confidence 333333335555655 3778888888877766655
No 260
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=55.30 E-value=57 Score=28.48 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=30.8
Q ss_pred cCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe
Q 012436 332 LKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH 385 (464)
Q Consensus 332 ~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 385 (464)
+.+++...|...... |++|.-...|.. .+++||.-+++|+|+-
T Consensus 160 ~~~pd~~~f~~t~~~----------D~vvvln~~e~~-sAilEA~K~~IPTIgI 202 (251)
T KOG0832|consen 160 LSLPDALCFLPTLTP----------DLVVVLNPEENH-SAILEAAKMAIPTIGI 202 (251)
T ss_pred cCCCcceeecccCCc----------ceeEecCccccc-HHHHHHHHhCCCeEEE
Confidence 334566666665533 888777656654 4899999999999985
No 261
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.93 E-value=2e+02 Score=27.45 Aligned_cols=106 Identities=11% Similarity=0.035 Sum_probs=66.2
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC--------ccHHHHHHHHHHHHhcCCCCcEEEcc
Q 012436 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK--------SDEERLQSLKDKSIELKVDGNVEFYK 342 (464)
Q Consensus 271 ~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~--------~~~~~~~~l~~~~~~~~l~~~v~~~g 342 (464)
.++.+| -..-.+-+.+++.++.+++. ..++..-|.-..+ -.++-.+.|++..++.|++ .+.-
T Consensus 102 l~vIAG-PCsIEs~eq~l~~A~~lk~~------g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~---~~te 171 (352)
T PRK13396 102 VVVVAG-PCSVENEEMIVETAKRVKAA------GAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLG---IITE 171 (352)
T ss_pred EEEEEe-CCcccCHHHHHHHHHHHHHc------CCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCc---EEEe
Confidence 345555 45556677888888888775 4556554432111 1245567788888888876 2233
Q ss_pred CCChhHHHHHHhcCcEEEEcCC-CCCCChHHHHHH-HhCCcEEEeCCC
Q 012436 343 NLLYRDLVKLLGGAVVGIHSMI-DEHFGISVVEYM-AAGAIPIAHNSA 388 (464)
Q Consensus 343 ~~~~~~~~~~l~~ad~~v~ps~-~e~~~~~~~Ea~-a~G~PvI~~~~~ 388 (464)
-.+.+++..+...+|++-.++. ..+ ..++++. ..|+||+.+.--
T Consensus 172 v~d~~~v~~~~~~~d~lqIga~~~~n--~~LL~~va~t~kPVllk~G~ 217 (352)
T PRK13396 172 VMDAADLEKIAEVADVIQVGARNMQN--FSLLKKVGAQDKPVLLKRGM 217 (352)
T ss_pred eCCHHHHHHHHhhCCeEEECcccccC--HHHHHHHHccCCeEEEeCCC
Confidence 3344666666666999998875 333 4455555 679999998733
No 262
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=54.89 E-value=1.4e+02 Score=25.83 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=54.6
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc-cCCChhHHHHHHhcCcEEEEcC---------CCCC-CChHH
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY-KNLLYRDLVKLLGGAVVGIHSM---------IDEH-FGISV 372 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~-g~~~~~~~~~~l~~ad~~v~ps---------~~e~-~~~~~ 372 (464)
+.++.++...... ...+.+.+.+..+++|........ ...+.+++.+.+..||+++++- +.+. .--.+
T Consensus 29 ~~~i~~iptA~~~-~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 29 GARVLFIPTASGD-RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCeEEEEeCCCCC-hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 5677888765543 445667788888888865322222 1235588999999999988872 1111 22236
Q ss_pred HHHHHhCCcEEEeCCC
Q 012436 373 VEYMAAGAIPIAHNSA 388 (464)
Q Consensus 373 ~Ea~a~G~PvI~~~~~ 388 (464)
.+....|+|++.+..|
T Consensus 108 ~~~~~~G~v~~G~SAG 123 (210)
T cd03129 108 LKRVARGVVIGGTSAG 123 (210)
T ss_pred HHHHHcCCeEEEcCHH
Confidence 7787889988877655
No 263
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=54.72 E-value=1.9e+02 Score=27.36 Aligned_cols=103 Identities=12% Similarity=-0.027 Sum_probs=60.5
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCC--------CCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 275 VAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCR--------NKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 275 ~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~--------~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
+..-..-..-+.+++.++.+++.. .++...|.-. ..-.++-.+.|.+.++++|++- +.-..+.
T Consensus 97 IAGPCsiEs~e~~~~~A~~lk~~g------a~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v---~tev~d~ 167 (335)
T PRK08673 97 IAGPCSVESEEQILEIARAVKEAG------AQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPI---VTEVMDP 167 (335)
T ss_pred EEecCccCCHHHHHHHHHHHHHhc------hhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcE---EEeeCCH
Confidence 333455556778888888877653 2222211100 0011344577888888998862 2333344
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChH-HHHHHHhCCcEEEeCC
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGIS-VVEYMAAGAIPIAHNS 387 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~-~~Ea~a~G~PvI~~~~ 387 (464)
+++..+...+|++-.++.. -.... +-++...|+||+.++-
T Consensus 168 ~~~~~l~~~vd~lqIgAr~-~~N~~LL~~va~~~kPViLk~G 208 (335)
T PRK08673 168 RDVELVAEYVDILQIGARN-MQNFDLLKEVGKTNKPVLLKRG 208 (335)
T ss_pred HHHHHHHHhCCeEEECccc-ccCHHHHHHHHcCCCcEEEeCC
Confidence 5665555668998888752 22233 4556667999999874
No 264
>PRK06849 hypothetical protein; Provisional
Probab=54.33 E-value=76 Score=30.69 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=26.3
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
+.+|+|+++ ||.......+++.|.+.| ++|+++...
T Consensus 2 ~~~~~VLI~-------G~~~~~~l~iar~l~~~G--~~Vi~~d~~ 37 (389)
T PRK06849 2 NTKKTVLIT-------GARAPAALELARLFHNAG--HTVILADSL 37 (389)
T ss_pred CCCCEEEEe-------CCCcHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 356889987 344446778999999999 677776654
No 265
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=53.32 E-value=2.2e+02 Score=28.06 Aligned_cols=111 Identities=12% Similarity=0.097 Sum_probs=62.8
Q ss_pred EEEEecc-CCCCChHHHHHHHH-HHHHHhcCCCCCcEEEEEcCCCCCccHHHH-----HH-----------------HHH
Q 012436 272 IISVAQF-RPEKAHPLQLEAFS-VALRKLDADLPRPRLQFVGSCRNKSDEERL-----QS-----------------LKD 327 (464)
Q Consensus 272 i~~~G~~-~~~K~~~~ll~a~~-~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~-----~~-----------------l~~ 327 (464)
|+.+|.. ....|=+.++.++- .|+++. |++.+.+....|+.....+. +. +++
T Consensus 3 i~i~G~~g~~N~GdeAil~~ii~~l~~~~----p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (426)
T PRK10017 3 LLILGNHTCGNRGDSAILRGLLDAINILN----PHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKK 78 (426)
T ss_pred EEEEccccCCCccHHHHHHHHHHHHHhhC----CCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHH
Confidence 5556655 45788888888775 455544 79999999988765320000 00 111
Q ss_pred HH-------------HhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcC---CCCCCChH----HHHHHHhCCcEEEeCC
Q 012436 328 KS-------------IELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM---IDEHFGIS----VVEYMAAGAIPIAHNS 387 (464)
Q Consensus 328 ~~-------------~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps---~~e~~~~~----~~Ea~a~G~PvI~~~~ 387 (464)
.. ...|+..++.+... ..++.+.+++||++|... ..+.+|.. ++-|..+|+|++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gq 156 (426)
T PRK10017 79 VLRRRYQHQVLLSRVTDTGKLRNIAIAQG--FTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGH 156 (426)
T ss_pred HHHhhhhHHHHHhhhccccccccccchhh--HHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECC
Confidence 11 01111111111111 246778899999999864 23434432 3457789999998764
Q ss_pred C
Q 012436 388 A 388 (464)
Q Consensus 388 ~ 388 (464)
+
T Consensus 157 s 157 (426)
T PRK10017 157 S 157 (426)
T ss_pred c
Confidence 4
No 266
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=53.26 E-value=1.5e+02 Score=25.58 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=60.6
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC-ChhHHHHHHh--cCcEEEEcCCCCC----CChHHHHHH
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL-LYRDLVKLLG--GAVVGIHSMIDEH----FGISVVEYM 376 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-~~~~~~~~l~--~ad~~v~ps~~e~----~~~~~~Ea~ 376 (464)
++++.++.+.+ .....++......+ .+...+.. +.++..+.+. ..|++++-....+ .|..+++.+
T Consensus 3 ~~~Ilivdd~~-----~~~~~l~~~L~~~~---~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l 74 (216)
T PRK10840 3 NMNVIIADDHP-----IVLFGIRKSLEQIE---WVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYI 74 (216)
T ss_pred ceEEEEECCcH-----HHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHH
Confidence 46777777653 33455666655432 23323222 3355655554 3688877543222 466666665
Q ss_pred H---hCCcEEEe-CCCCC--ccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 377 A---AGAIPIAH-NSAGP--KMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 377 a---~G~PvI~~-~~~~~--~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
. .++|+|+- ..... ....... |..|++.. +++++.++|..+..
T Consensus 75 ~~~~~~~~iIvls~~~~~~~~~~a~~~---Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 75 KRHFPSLSIIVLTMNNNPAILSAVLDL---DIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred HHHCCCCcEEEEEecCCHHHHHHHHHC---CCeEEEECCCCHHHHHHHHHHHHC
Confidence 4 34566654 32221 0122344 67788775 89999999988875
No 267
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=52.93 E-value=75 Score=30.32 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+..++-...+-+..||+++-.+-...|-..++...++..+...| ++|.+.++..
T Consensus 149 tQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G--~~v~~~~P~~ 211 (357)
T TIGR03316 149 TQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFG--MDVTLAHPEG 211 (357)
T ss_pred hHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcC--CEEEEECCCc
Confidence 69999999998776433233567898874333222335677778888999988 8888888753
No 268
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=52.55 E-value=66 Score=29.95 Aligned_cols=53 Identities=23% Similarity=0.185 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.++++..+...+ +.-+.+||+++-. ..+++..++..+...| .+|.+.++..
T Consensus 134 tQaL~Dl~Ti~e~~---g~l~gl~i~~vGd-------~~~v~~Sl~~~l~~~g--~~v~~~~P~~ 186 (304)
T PRK00779 134 CQILADLLTIYEHR---GSLKGLKVAWVGD-------GNNVANSLLLAAALLG--FDLRVATPKG 186 (304)
T ss_pred HHHHHHHHHHHHHh---CCcCCcEEEEEeC-------CCccHHHHHHHHHHcC--CEEEEECCcc
Confidence 69999999887665 3356789999843 2357788888999988 8888887754
No 269
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=52.43 E-value=76 Score=30.51 Aligned_cols=40 Identities=18% Similarity=0.104 Sum_probs=28.0
Q ss_pred hHHHHHHhc--CcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 347 RDLVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 347 ~~~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
+.+.++.+. +|+++........-...++|+..|++|...+
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALAN 122 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeC
Confidence 667777775 5777766443322245799999999999866
No 270
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=52.13 E-value=31 Score=34.46 Aligned_cols=77 Identities=6% Similarity=-0.073 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEE
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPI 383 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI 383 (464)
+.-=+++|.-.........+.+++++++.|....+...|.++.+.+..+ ...|++|..+..+. ++.++-.+-+|||
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vgkinpaKLaNF-~eID~fV~vaCPr~---sidd~~~F~KPVl 357 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVGKPNPAKLANF-EDIDIFVLLGCSQS---GIIDSNEFYRPIV 357 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCCCEEEEccCCCc---ccccHhhCCCcee
Confidence 5556677765555566788999999999998888888999999888555 57999998754331 2233444444444
Q ss_pred E
Q 012436 384 A 384 (464)
Q Consensus 384 ~ 384 (464)
.
T Consensus 358 T 358 (496)
T TIGR00272 358 T 358 (496)
T ss_pred c
Confidence 3
No 271
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=51.98 E-value=64 Score=25.90 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC----c-EEEEcCCCCCCChHHHHHHH-hCCcEEE---eCCCCC
Q 012436 320 ERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----V-VGIHSMIDEHFGISVVEYMA-AGAIPIA---HNSAGP 390 (464)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a----d-~~v~ps~~e~~~~~~~Ea~a-~G~PvI~---~~~~~~ 390 (464)
+..+.+++.++++|+ .+.|.-.-...++.+.++++ | +.+.|--+...+.++.+|++ .++|+|= |+.-.-
T Consensus 28 di~~~~~~~a~~~g~--~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiSNi~aR 105 (141)
T TIGR01088 28 EIVEIIETFAAQLNV--ELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLSNVHAR 105 (141)
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcCCcccc
Confidence 344556666666654 36666555566777777665 4 56677777778899999986 5899985 333221
Q ss_pred ccc-----eecccCCccceeecC-CHHHHHHHHHHHH
Q 012436 391 KMD-----IVLEEDGQQTGFLAQ-NAEEYADAIVKII 421 (464)
Q Consensus 391 ~~~-----~v~~~~~~~~g~~~~-~~~~la~~i~~l~ 421 (464)
++ ++.+ -..|.+.. -.+...-+++.++
T Consensus 106 -E~fR~~S~is~---~~~G~I~G~G~~gY~lAl~a~~ 138 (141)
T TIGR01088 106 -EEFRHHSYTAP---VAGGVIVGLGAQGYLLALRYLV 138 (141)
T ss_pred -ccccccccccc---cceEEEeecCHHHHHHHHHHHH
Confidence 22 2333 34556665 6667777776654
No 272
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=51.94 E-value=67 Score=28.63 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=27.1
Q ss_pred ccccccceEEEecCCCCCC--CCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 29 ARRNRTTSVAFFHPNTNDG--GGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~--GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
.++...++|+++.+-...- |.+.. +..+.++|++|.++++|...
T Consensus 5 ~~~~~~~~vL~v~aHPDDe~~g~ggt-----la~~~~~G~~V~v~~lT~Ge 50 (237)
T COG2120 5 PPMLDPLRVLVVFAHPDDEEIGCGGT-----LAKLAARGVEVTVVCLTLGE 50 (237)
T ss_pred cccccCCcEEEEecCCcchhhccHHH-----HHHHHHCCCeEEEEEccCCc
Confidence 3445667888886654432 22222 34568889888877777643
No 273
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=51.79 E-value=71 Score=30.07 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=24.6
Q ss_pred HHHHHhhhcCCcEEEeccccccc-ch---------hhhccCceEEEEee
Q 012436 131 LSWEALCKFTPLYYFDTSGYAFT-YP---------LARIFGCRVICYTH 169 (464)
Q Consensus 131 ~~~~~l~~~~~Dvv~~~~~~~~~-~~---------~~~~~~~p~v~~~h 169 (464)
+....+++.+||++++--.+... +. +....++|.|.-.+
T Consensus 71 ~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 71 KILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred HHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 34456889999999953222211 11 33378999998766
No 274
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.72 E-value=1.9e+02 Score=26.43 Aligned_cols=45 Identities=22% Similarity=0.001 Sum_probs=36.6
Q ss_pred cEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 337 ~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
+|..++++|+++..+++..||+-+.- .| =+..-|..+|+|.+-.=
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~VR--GE---DSFVRAq~agkPflWHI 283 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNLVR--GE---DSFVRAQLAGKPFLWHI 283 (370)
T ss_pred EEEEecCCcHhHHHHHHHhcccceee--cc---hHHHHHHHcCCCcEEEe
Confidence 56678999999999999999997654 22 26788999999998753
No 275
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=51.65 E-value=63 Score=28.21 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
+++..++.+.+.... -+.++.= ... ...++.++++++|....+.+-+..|-+.+..++...|+.++-
T Consensus 72 ~p~~~i~~fa~agad------~It~H~E-~~~------~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllM 138 (220)
T COG0036 72 NPDRYIEAFAKAGAD------IITFHAE-ATE------HIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLM 138 (220)
T ss_pred CHHHHHHHHHHhCCC------EEEEEec-cCc------CHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEE
Confidence 567777777766321 2344443 221 246788888999998899999999999999999999987776
Q ss_pred CCCCCCC
Q 012436 363 MIDEHFG 369 (464)
Q Consensus 363 s~~e~~~ 369 (464)
|..-|||
T Consensus 139 sVnPGfg 145 (220)
T COG0036 139 SVNPGFG 145 (220)
T ss_pred eECCCCc
Confidence 6666666
No 276
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=51.27 E-value=2.5e+02 Score=27.60 Aligned_cols=164 Identities=11% Similarity=0.086 Sum_probs=88.6
Q ss_pred hcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCC-------ccCCCCCCCCCcEEEEEeccC---CCCChHHHH
Q 012436 220 SCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGL-------QVLPLERSTEYPAIISVAQFR---PEKAHPLQL 288 (464)
Q Consensus 220 ~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~-------~~~~~~~~~~~~~i~~~G~~~---~~K~~~~ll 288 (464)
...|.|+--.+...+.+.+.... ..+..+|...+-.... .+.-.....-+.+.+....+. ...|.+..+
T Consensus 65 ~E~dvVfGg~~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~ 144 (426)
T cd01972 65 TEKDVVFGGEKKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAF 144 (426)
T ss_pred CccceecchHHHHHHHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHH
Confidence 44566666666666666555432 3344444433322211 100000111222333333332 236888888
Q ss_pred HHHHHHHHHhc-CCCCCcEEEEEcCCCC--CccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCC
Q 012436 289 EAFSVALRKLD-ADLPRPRLQFVGSCRN--KSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID 365 (464)
Q Consensus 289 ~a~~~l~~~~~-~~~p~~~l~i~G~~~~--~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~ 365 (464)
+++-+...... ...++-.+.++|.... ........+++++.+++|+..+..+.|..+.+|+.+ +.+|.+.+..+.
T Consensus 145 ~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~-~~~A~lniv~~~- 222 (426)
T cd01972 145 HGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELER-ASEAAANVTLCL- 222 (426)
T ss_pred HHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-cccCCEEEEECh-
Confidence 77765432110 0001336888886532 111133578999999999988888888777777765 556666555432
Q ss_pred CCCChHHHHHH--HhCCcEEEeC
Q 012436 366 EHFGISVVEYM--AAGAIPIAHN 386 (464)
Q Consensus 366 e~~~~~~~Ea~--a~G~PvI~~~ 386 (464)
..+..+.+.| -+|+|.+...
T Consensus 223 -~~g~~~a~~Lee~~GiP~~~~~ 244 (426)
T cd01972 223 -DLGYYLGAALEQRFGVPEIKAP 244 (426)
T ss_pred -hHHHHHHHHHHHHhCCCeEecC
Confidence 2456677777 4799988654
No 277
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=50.90 E-value=2.5e+02 Score=27.50 Aligned_cols=97 Identities=7% Similarity=0.034 Sum_probs=55.0
Q ss_pred cEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEE
Q 012436 305 PRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIA 384 (464)
Q Consensus 305 ~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~ 384 (464)
-.+.++.... +..+.++++++- .. ..+.+++.+.+..+|+++..+....+=++ ..+.-+.|.+.
T Consensus 206 ~~I~V~nRt~--------~ra~~La~~~~~---~~---~~~~~~l~~~l~~aDiVI~aT~a~~~vi~--~~~~~~~~~~~ 269 (414)
T PRK13940 206 KQIMLANRTI--------EKAQKITSAFRN---AS---AHYLSELPQLIKKADIIIAAVNVLEYIVT--CKYVGDKPRVF 269 (414)
T ss_pred CEEEEECCCH--------HHHHHHHHHhcC---Ce---EecHHHHHHHhccCCEEEECcCCCCeeEC--HHHhCCCCeEE
Confidence 3688887653 344555555431 11 23458889999999999987543322222 23345789998
Q ss_pred eCCCCCccceecccCCccceeecCCHHHHHHHHHH
Q 012436 385 HNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVK 419 (464)
Q Consensus 385 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~ 419 (464)
-|.+-+ .++ .+..+.-.|...-|.|++.+.+.+
T Consensus 270 iDLavP-Rdi-dp~v~~l~~v~l~~iDdl~~i~~~ 302 (414)
T PRK13940 270 IDISIP-QAL-DPKLGELEQNVYYCVDDINAVIED 302 (414)
T ss_pred EEeCCC-CCC-CccccCcCCeEEEeHHHHHHHHHH
Confidence 887654 454 332212234333366666665543
No 278
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=50.74 E-value=1.1e+02 Score=23.34 Aligned_cols=33 Identities=15% Similarity=-0.020 Sum_probs=19.3
Q ss_pred HHhhhcCCcEEEecccccccchhhh---ccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPLAR---IFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~~~---~~~~p~v~ 166 (464)
+.+...++|+|+..+.........+ ..|+++++
T Consensus 56 ~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 56 ELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp HHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEE
T ss_pred HHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEE
Confidence 4466678998875444333333222 57776665
No 279
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=50.31 E-value=59 Score=24.15 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=46.7
Q ss_pred EEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHH--HHHhCCcEEE
Q 012436 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVE--YMAAGAIPIA 384 (464)
Q Consensus 307 l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~E--a~a~G~PvI~ 384 (464)
++++|.|-... -..+.+++.+++.|++-.|.-.+. .++.+....+|+++..+.. .+-..-++ +.-.++||..
T Consensus 3 l~~Cg~G~sTS--~~~~ki~~~~~~~~~~~~v~~~~~---~~~~~~~~~~Diil~~Pqv-~~~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 3 LLVCSAGMSTS--ILVKKMKKAAEKRGIDAEIEAVPE---SELEEYIDDADVVLLGPQV-RYMLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred EEEcCCCchHH--HHHHHHHHHHHHCCCceEEEEecH---HHHHHhcCCCCEEEEChhH-HHHHHHHHHHhccCCCcEEE
Confidence 45666664322 356788999999888644444433 6777788899987765321 11222233 3457899988
Q ss_pred eCCC
Q 012436 385 HNSA 388 (464)
Q Consensus 385 ~~~~ 388 (464)
-+..
T Consensus 77 I~~~ 80 (96)
T cd05564 77 IDMM 80 (96)
T ss_pred cChH
Confidence 7643
No 280
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=49.92 E-value=1.7e+02 Score=26.16 Aligned_cols=55 Identities=9% Similarity=0.118 Sum_probs=37.5
Q ss_pred CCcEEEccC--CChhHHHHHHhcCcEEEEc-CCCCCCChH--HHHHHHhCCcEEEeCCCC
Q 012436 335 DGNVEFYKN--LLYRDLVKLLGGAVVGIHS-MIDEHFGIS--VVEYMAAGAIPIAHNSAG 389 (464)
Q Consensus 335 ~~~v~~~g~--~~~~~~~~~l~~ad~~v~p-s~~e~~~~~--~~Ea~a~G~PvI~~~~~~ 389 (464)
.++|.+.|. ++.+++.+.+..||++|.- +...-.|.. +.+|-..|.|+|.-+...
T Consensus 150 rP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 150 RPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred CCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC
Confidence 467888887 3667788889999986553 222323322 466888999988877653
No 281
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=49.56 E-value=1.4e+02 Score=26.68 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=25.0
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
|||++.....- ...-+..|+++|.+.| +|++..+..+
T Consensus 1 M~ILltNDDGi----~a~Gi~aL~~~l~~~g---~V~VvAP~~~ 37 (244)
T TIGR00087 1 MKILLTNDDGI----HSPGIRALYQALKELG---EVTVVAPARQ 37 (244)
T ss_pred CeEEEECCCCC----CCHhHHHHHHHHHhCC---CEEEEeCCCC
Confidence 78998766532 2335677788998876 5677776653
No 282
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=49.44 E-value=89 Score=29.70 Aligned_cols=45 Identities=22% Similarity=0.104 Sum_probs=37.4
Q ss_pred cEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 337 ~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
.+++++++++++..+++-.||+-++= .|. |.+-|.-+|+|.|=.=
T Consensus 243 ~~~~LPf~~Q~~yD~LLW~cD~NfVR--GED---SFVRAqWAgkPfvWhI 287 (371)
T TIGR03837 243 TVAVLPFVPQDDYDRLLWACDLNFVR--GED---SFVRAQWAGKPFVWHI 287 (371)
T ss_pred EEEEcCCCChhhHHHHHHhChhcEee--chh---HHHHHHHcCCCceeec
Confidence 57889999999999999999996543 332 6889999999999754
No 283
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=48.98 E-value=65 Score=29.73 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=22.0
Q ss_pred CCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 48 GGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
||+...=...+.+|.+.| ++|+++..-
T Consensus 7 GGAGYIGSHtv~~Ll~~G--~~vvV~DNL 33 (329)
T COG1087 7 GGAGYIGSHTVRQLLKTG--HEVVVLDNL 33 (329)
T ss_pred cCcchhHHHHHHHHHHCC--CeEEEEecC
Confidence 688888888899999999 677777654
No 284
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=48.73 E-value=17 Score=29.64 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=26.9
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEE
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIV 72 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~ 72 (464)
||++++. .+..|-....+..+|..|.+.|+++++.-
T Consensus 1 Mk~LIlY--str~GqT~kIA~~iA~~L~e~g~qvdi~d 36 (175)
T COG4635 1 MKTLILY--STRDGQTRKIAEYIASHLRESGIQVDIQD 36 (175)
T ss_pred CceEEEE--ecCCCcHHHHHHHHHHHhhhcCCeeeeee
Confidence 6788763 33345777888999999999997776554
No 285
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=48.71 E-value=83 Score=29.24 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.++++.-+..++- .-+..||+|+-. +...+++..++..++..| .+|.+.++..
T Consensus 132 tQ~LaDl~Ti~e~~g---~l~g~~va~vGD-----~~~~~v~~Sl~~~~a~~g--~~v~~~~P~~ 186 (301)
T TIGR00670 132 TQTLLDLYTIYEEFG---RLDGLKIALVGD-----LKYGRTVHSLAEALTRFG--VEVYLISPEE 186 (301)
T ss_pred HHHHHHHHHHHHHhC---CCCCCEEEEEcc-----CCCCcHHHHHHHHHHHcC--CEEEEECCcc
Confidence 689999988877663 356689999742 123688888999999999 8888888754
No 286
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=48.63 E-value=1.5e+02 Score=26.80 Aligned_cols=37 Identities=5% Similarity=0.180 Sum_probs=24.6
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
|||++.....-..-| +..|+++|.+ + .+|++..+..+
T Consensus 1 M~ILvtNDDGi~apG----l~aL~~~l~~-~--~~V~VvAP~~~ 37 (253)
T PRK13933 1 MNILLTNDDGINAEG----INTLAELLSK-Y--HEVIIVAPENQ 37 (253)
T ss_pred CeEEEEcCCCCCChh----HHHHHHHHHh-C--CcEEEEccCCC
Confidence 789998776543323 6677888865 4 36777777654
No 287
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=47.78 E-value=27 Score=27.21 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=22.7
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
|||+|+......-.-..-....|+.+-+++| |+|..++..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RG--hev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRG--HEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT---EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCC--CEEEEEEcC
Confidence 8999998766432111223446788999999 677776653
No 288
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=47.66 E-value=1.2e+02 Score=27.56 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=39.6
Q ss_pred HHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccccCcceehhhhchhhhHHHHH
Q 012436 55 WCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWE 134 (464)
Q Consensus 55 ~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (464)
..+|+.|+++| ++++++.+..+ .-....++..+..++.+ .++...... .....+...
T Consensus 20 ~~~A~~lA~~g--~~liLvaR~~~-kL~~la~~l~~~~~v~v----~vi~~DLs~----------------~~~~~~l~~ 76 (265)
T COG0300 20 AELAKQLARRG--YNLILVARRED-KLEALAKELEDKTGVEV----EVIPADLSD----------------PEALERLED 76 (265)
T ss_pred HHHHHHHHHCC--CEEEEEeCcHH-HHHHHHHHHHHhhCceE----EEEECcCCC----------------hhHHHHHHH
Confidence 45699999999 77777776531 11223344444444322 222222211 112333444
Q ss_pred Hhhhc--CCcEEEeccccccc
Q 012436 135 ALCKF--TPLYYFDTSGYAFT 153 (464)
Q Consensus 135 ~l~~~--~~Dvv~~~~~~~~~ 153 (464)
.++.. +.|++++..++...
T Consensus 77 ~l~~~~~~IdvLVNNAG~g~~ 97 (265)
T COG0300 77 ELKERGGPIDVLVNNAGFGTF 97 (265)
T ss_pred HHHhcCCcccEEEECCCcCCc
Confidence 45554 78999977665543
No 289
>PRK06988 putative formyltransferase; Provisional
Probab=47.35 E-value=1.4e+02 Score=27.86 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=18.9
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLD 69 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~ 69 (464)
+|||+|+ |...+.....+.|.+.|+++.
T Consensus 2 ~mkIvf~--------Gs~~~a~~~L~~L~~~~~~i~ 29 (312)
T PRK06988 2 KPRAVVF--------AYHNVGVRCLQVLLARGVDVA 29 (312)
T ss_pred CcEEEEE--------eCcHHHHHHHHHHHhCCCCEE
Confidence 4899997 444566666778888775433
No 290
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=47.04 E-value=1.4e+02 Score=27.43 Aligned_cols=40 Identities=5% Similarity=0.011 Sum_probs=24.1
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
..++|||+++.+. ...-+..+.++......+.+|..+..+
T Consensus 86 ~~~~~ri~vl~Sg------~gsnl~al~~~~~~~~~~~~i~~visn 125 (286)
T PRK06027 86 SAERKRVVILVSK------EDHCLGDLLWRWRSGELPVEIAAVISN 125 (286)
T ss_pred cccCcEEEEEEcC------CCCCHHHHHHHHHcCCCCcEEEEEEEc
Confidence 4467899987542 244456667777664444666555443
No 291
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=46.84 E-value=1.1e+02 Score=28.19 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAV 89 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~ 89 (464)
+|.+++++.+--++.. -+.+|++|+- .+..++..+..+-+..| .++.+.++......+.+.+...
T Consensus 135 ~Q~LADl~Ti~E~~g~---l~g~k~a~vG-------DgNNv~nSl~~~~a~~G--~dv~ia~Pk~~~p~~~~~~~a~ 199 (310)
T COG0078 135 CQALADLMTIKEHFGS---LKGLKLAYVG-------DGNNVANSLLLAAAKLG--MDVRIATPKGYEPDPEVVEKAK 199 (310)
T ss_pred HHHHHHHHHHHHhcCc---ccCcEEEEEc-------CcchHHHHHHHHHHHhC--CeEEEECCCcCCcCHHHHHHHH
Confidence 6899999988877744 5668999973 34788888888889999 8888988876545555554443
No 292
>PLN02929 NADH kinase
Probab=46.74 E-value=61 Score=30.01 Aligned_cols=69 Identities=10% Similarity=0.141 Sum_probs=43.3
Q ss_pred HHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC--------ccceecccCCccceeecC-CHHHHHHHHHHH
Q 012436 350 VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP--------KMDIVLEEDGQQTGFLAQ-NAEEYADAIVKI 420 (464)
Q Consensus 350 ~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~--------~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l 420 (464)
.+....+|+.+.- ..+|.=+.....+..++||+.-+.|.. ..++-.. +..|++++ +++++.+++.++
T Consensus 59 ~~~~~~~Dlvi~l-GGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~---r~lGfL~~~~~~~~~~~L~~i 134 (301)
T PLN02929 59 SQPIRDVDLVVAV-GGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDAR---RSTGHLCAATAEDFEQVLDDV 134 (301)
T ss_pred ccccCCCCEEEEE-CCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccc---cCccccccCCHHHHHHHHHHH
Confidence 3445678887754 233322223333455789999887621 1122122 46899998 999999999999
Q ss_pred Hc
Q 012436 421 IS 422 (464)
Q Consensus 421 ~~ 422 (464)
++
T Consensus 135 l~ 136 (301)
T PLN02929 135 LF 136 (301)
T ss_pred Hc
Confidence 87
No 293
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=46.56 E-value=52 Score=26.19 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCccHHHHHHHHHHHHhcCCC----------------CcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 306 RLQFVGSCRNKSDEERLQSLKDKSIELKVD----------------GNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 306 ~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~----------------~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
-++++|.+.... ...+++++++++++++ ..+=+.|........+++.+||++|.-
T Consensus 14 P~il~G~g~~~~--~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 14 PVILAGRGARRS--GAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAI 84 (137)
T ss_dssp EEEEE-HHHHHT--TCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEE
T ss_pred EEEEEcCCcChh--hHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEE
Confidence 466777642100 1236777777777654 122234444568889999999987764
No 294
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=46.55 E-value=56 Score=24.24 Aligned_cols=76 Identities=13% Similarity=0.024 Sum_probs=45.8
Q ss_pred EEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHH--HhCCcEEE
Q 012436 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM--AAGAIPIA 384 (464)
Q Consensus 307 l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~--a~G~PvI~ 384 (464)
++++|.|-. ..-..+.+++.+++.|++-.+.-.+ ..++.+....+|+++..+.. .+-..-++.. ..|+||..
T Consensus 7 Ll~C~~G~s--SS~l~~k~~~~~~~~gi~~~v~a~~---~~~~~~~~~~~Dvill~pqi-~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 7 LLLCAAGMS--TSLLVNKMNKAAEEYGVPVKIAAGS---YGAAGEKLDDADVVLLAPQV-AYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred EEECCCchh--HHHHHHHHHHHHHHCCCcEEEEEec---HHHHHhhcCCCCEEEECchH-HHHHHHHHHHhhhcCCCEEE
Confidence 455555533 2235578899999888764443333 36787888899987765321 1122223333 34789998
Q ss_pred eCCC
Q 012436 385 HNSA 388 (464)
Q Consensus 385 ~~~~ 388 (464)
.+..
T Consensus 81 I~~~ 84 (95)
T TIGR00853 81 INGA 84 (95)
T ss_pred eChh
Confidence 7644
No 295
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=46.50 E-value=1.2e+02 Score=28.22 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=18.4
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDL 68 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~ 68 (464)
|||+|+ |...+.....+.|.+.++++
T Consensus 1 mkIvf~--------G~~~~a~~~L~~L~~~~~~i 26 (309)
T PRK00005 1 MRIVFM--------GTPEFAVPSLKALLESGHEV 26 (309)
T ss_pred CEEEEE--------CCCHHHHHHHHHHHHCCCcE
Confidence 788887 45556677788888777543
No 296
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=46.49 E-value=2.9e+02 Score=26.92 Aligned_cols=104 Identities=13% Similarity=-0.019 Sum_probs=64.7
Q ss_pred CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
+++.+.+...+.++..-...+++++ +++. |++.+++....+.. .+..++ .++-...+.+++.=..
T Consensus 48 ~~p~vWiHaaSVGEv~a~~pLv~~l---~~~~----P~~~ilvTt~T~Tg-----~e~a~~---~~~~~v~h~YlP~D~~ 112 (419)
T COG1519 48 EGPLVWIHAASVGEVLAALPLVRAL---RERF----PDLRILVTTMTPTG-----AERAAA---LFGDSVIHQYLPLDLP 112 (419)
T ss_pred CCCeEEEEecchhHHHHHHHHHHHH---HHhC----CCCCEEEEecCccH-----HHHHHH---HcCCCeEEEecCcCch
Confidence 3446777777777766555555544 4444 78888888755432 133333 3332223344443333
Q ss_pred hHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 347 RDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 347 ~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
.-+..+++ +-|++|+. -.|-+|+.+.|+-..|+|.+.-|
T Consensus 113 ~~v~rFl~~~~P~l~Ii~-EtElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 113 IAVRRFLRKWRPKLLIIM-ETELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred HHHHHHHHhcCCCEEEEE-eccccHHHHHHHHHcCCCEEEEe
Confidence 45555654 45676655 67999999999999999999866
No 297
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=46.41 E-value=41 Score=31.72 Aligned_cols=77 Identities=10% Similarity=-0.032 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEE
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPI 383 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI 383 (464)
+.-=+++|.-.........+.+++++++.|....+...|.++.+.+..+ ...|++|..+..+ +++-++-..-+|||
T Consensus 233 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf-~eiD~fV~~aCPr---~sidd~~~f~kPvl 308 (332)
T TIGR00322 233 KKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLSNVSPAKLLMF-DQIDVFVQVACPR---IAIDDGYLFNKPLL 308 (332)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCcCEEEEecCCC---ceecchhhcCCccc
Confidence 4455667765444566778899999999998877888999988888554 5799999875432 34445555556655
Q ss_pred E
Q 012436 384 A 384 (464)
Q Consensus 384 ~ 384 (464)
+
T Consensus 309 T 309 (332)
T TIGR00322 309 T 309 (332)
T ss_pred c
Confidence 5
No 298
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=46.35 E-value=2.2e+02 Score=25.58 Aligned_cols=99 Identities=9% Similarity=-0.067 Sum_probs=64.1
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCc--------cHHHHHHHHHHHHhcCCCCcEEEccCCChhHHH
Q 012436 279 RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKS--------DEERLQSLKDKSIELKVDGNVEFYKNLLYRDLV 350 (464)
Q Consensus 279 ~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~--------~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~ 350 (464)
..-..-+.+++.++.+++. .+.++.-|.-..+. ..+-.+.|.+.++++|++ .+.--.+.+++.
T Consensus 23 C~vEs~e~~~~~a~~~~~~------g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~---~~Tev~d~~~v~ 93 (250)
T PRK13397 23 CSIESYDHIRLAASSAKKL------GYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL---SVSEIMSERQLE 93 (250)
T ss_pred CccCCHHHHHHHHHHHHHc------CCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC---EEEeeCCHHHHH
Confidence 3344556677777776554 67777777532211 235678899999999876 222333456666
Q ss_pred HHHhcCcEEEEcCCCCCCChHHHHHH-HhCCcEEEeCC
Q 012436 351 KLLGGAVVGIHSMIDEHFGISVVEYM-AAGAIPIAHNS 387 (464)
Q Consensus 351 ~~l~~ad~~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~ 387 (464)
.+...+|++-.+|. +.....+++++ ..|+||+.+.-
T Consensus 94 ~~~e~vdilqIgs~-~~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 94 EAYDYLDVIQVGAR-NMQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HHHhcCCEEEECcc-cccCHHHHHHHHccCCeEEEeCC
Confidence 66667999988864 33345666666 56999999874
No 299
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=46.28 E-value=1.1e+02 Score=28.69 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 323 ~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
+..++.+++++++ ....++.++++. .|+++..+....-.-.+..|+..|++|++=.
T Consensus 41 ~~a~~~a~~~~~~--------~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EK 98 (342)
T COG0673 41 ERAEAFAEEFGIA--------KAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEK 98 (342)
T ss_pred HHHHHHHHHcCCC--------cccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcC
Confidence 5677888887764 223567777876 4777766544433344599999999999854
No 300
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=46.25 E-value=67 Score=24.16 Aligned_cols=41 Identities=12% Similarity=0.348 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcE
Q 012436 288 LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV 338 (464)
Q Consensus 288 l~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v 338 (464)
...+.++.+.. |+.+++++|+..+.+. +...+.++++ +++|
T Consensus 52 ~~~i~~i~~~f----P~~kfiLIGDsgq~Dp----eiY~~ia~~~--P~~i 92 (100)
T PF09949_consen 52 RDNIERILRDF----PERKFILIGDSGQHDP----EIYAEIARRF--PGRI 92 (100)
T ss_pred HHHHHHHHHHC----CCCcEEEEeeCCCcCH----HHHHHHHHHC--CCCE
Confidence 34445555554 7999999999766643 3334444444 4444
No 301
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=45.76 E-value=63 Score=31.20 Aligned_cols=72 Identities=19% Similarity=0.105 Sum_probs=44.1
Q ss_pred Cc-EEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE--ccCCChhHHHHHHhcCcEEEEcCCCCCCChHH-HHHHHhC
Q 012436 304 RP-RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF--YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISV-VEYMAAG 379 (464)
Q Consensus 304 ~~-~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~--~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~-~Ea~a~G 379 (464)
+. +++++|... +.+++.++++. ..++.+ ..-.+.+++.++++.+|++|...... ++..+ --++.+|
T Consensus 22 ~~~~v~va~r~~--------~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g 91 (386)
T PF03435_consen 22 PFEEVTVADRNP--------EKAERLAEKLL-GDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAG 91 (386)
T ss_dssp CE-EEEEEESSH--------HHHHHHHT--T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT
T ss_pred CCCcEEEEECCH--------HHHHHHHhhcc-ccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhC
Confidence 45 888888653 55555655422 234443 34446678999999999999876433 45554 4567889
Q ss_pred CcEEEe
Q 012436 380 AIPIAH 385 (464)
Q Consensus 380 ~PvI~~ 385 (464)
++.|-+
T Consensus 92 ~~yvD~ 97 (386)
T PF03435_consen 92 VHYVDT 97 (386)
T ss_dssp -EEEES
T ss_pred CCeecc
Confidence 988874
No 302
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=45.33 E-value=2.4e+02 Score=27.10 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhcC----
Q 012436 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGA---- 356 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~a---- 356 (464)
++.+.++++..++. ..++.+......+.+.++..++-+.+.+.|. +.|.+. |...++++.++++..
T Consensus 111 ~~~~~~~i~~ak~~------G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~-~~i~l~DT~G~~~P~~v~~li~~l~~~~ 183 (363)
T TIGR02090 111 LEKAVEAVEYAKEH------GLIVEFSAEDATRTDIDFLIKVFKRAEEAGA-DRINIADTVGVLTPQKMEELIKKLKENV 183 (363)
T ss_pred HHHHHHHHHHHHHc------CCEEEEEEeecCCCCHHHHHHHHHHHHhCCC-CEEEEeCCCCccCHHHHHHHHHHHhccc
Confidence 45555666665554 3333333222223345556666666666664 456553 666777777666553
Q ss_pred cEEEEcCCCCCCChH---HHHHHHhCCcEEEeCCCCC
Q 012436 357 VVGIHSMIDEHFGIS---VVEYMAAGAIPIAHNSAGP 390 (464)
Q Consensus 357 d~~v~ps~~e~~~~~---~~Ea~a~G~PvI~~~~~~~ 390 (464)
++-+--..+..+|+. .++|+.+|.-.|-+...|.
T Consensus 184 ~~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~Gl 220 (363)
T TIGR02090 184 KLPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGI 220 (363)
T ss_pred CceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecc
Confidence 232333335566665 4889999998887766665
No 303
>PLN02285 methionyl-tRNA formyltransferase
Probab=45.25 E-value=1.3e+02 Score=28.38 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhh------CCCCceEEEcccCCCCchh-------HHHHHHhhcCcc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEE------SPDLDCIVYTGDHDAFPDS-------LLARAVDRFGVE 95 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~------g~~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~ 95 (464)
.++.++|||+|+ |...+.....++|.+. + ++|+.+.+..+..... .........++.
T Consensus 1 ~~~~~~~kI~f~--------Gt~~fa~~~L~~L~~~~~~~~~~--~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp 70 (334)
T PLN02285 1 AGSGRKKRLVFL--------GTPEVAATVLDALLDASQAPDSA--FEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFP 70 (334)
T ss_pred CCCCCccEEEEE--------ECCHHHHHHHHHHHhhhhccCCC--CeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCC
Q ss_pred ---cCCCceeeeeecccccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEE
Q 012436 96 ---LLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVI 165 (464)
Q Consensus 96 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v 165 (464)
+....... -....+.++..+||+++ ..++...++ +....+...+
T Consensus 71 ~~~v~~~~~~~-------------------------~~~~~~~l~~~~~Dliv-~~~~~~ilp~~~l~~~~~g~i 119 (334)
T PLN02285 71 PDLIFTPEKAG-------------------------EEDFLSALRELQPDLCI-TAAYGNILPQKFLDIPKLGTV 119 (334)
T ss_pred cceecCccccC-------------------------CHHHHHHHHhhCCCEEE-hhHhhhhcCHHHHhhccCCEE
No 304
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=45.18 E-value=47 Score=26.62 Aligned_cols=98 Identities=22% Similarity=0.275 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC----c-EEEEcCCCCCCChHHHHHHHh-CCcEEEeCCCC--Cc
Q 012436 320 ERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----V-VGIHSMIDEHFGISVVEYMAA-GAIPIAHNSAG--PK 391 (464)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a----d-~~v~ps~~e~~~~~~~Ea~a~-G~PvI~~~~~~--~~ 391 (464)
+..+.+++.++++|+ .+.|.-.-...++.+.++++ | +.+.|--+...+..+.+|+.. ++|+|=-.... ..
T Consensus 28 ~i~~~l~~~a~~~g~--~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiSNi~aR 105 (140)
T cd00466 28 DIEALLRELAAELGV--EVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEVHISNIHAR 105 (140)
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecCCcccc
Confidence 344556666666654 36666555556676666654 4 456676677788889998854 88988532221 11
Q ss_pred cce-----ecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 392 MDI-----VLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 392 ~~~-----v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
+++ +.+ ...|.++. -.+...-++..+++
T Consensus 106 E~fR~~S~is~---~~~G~I~G~G~~gY~lAl~~~~~ 139 (140)
T cd00466 106 EEFRHHSVISP---VATGVIAGLGADGYRLALEALAS 139 (140)
T ss_pred ccccccccccc---ceeEEEEeCCHHHHHHHHHHHHh
Confidence 222 333 34566665 67777777766653
No 305
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=45.08 E-value=66 Score=27.09 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=23.3
Q ss_pred hHHHHHHhcCcEEEE--cCCCCCCC---hHHHHHHHhCCcEEEe
Q 012436 347 RDLVKLLGGAVVGIH--SMIDEHFG---ISVVEYMAAGAIPIAH 385 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~--ps~~e~~~---~~~~Ea~a~G~PvI~~ 385 (464)
.++.+++++||+++. |...++.+ -..++.|--|.-+|-+
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 467788999998765 43444434 4466666666644433
No 306
>PRK09271 flavodoxin; Provisional
Probab=45.01 E-value=18 Score=29.85 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=24.9
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDL 68 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~ 68 (464)
|||+++..+ ..|-++.++..+++.|.+.|+++
T Consensus 1 mkv~IvY~S--~tGnTe~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 1 MRILLAYAS--LSGNTREVAREIEERCEEAGHEV 32 (160)
T ss_pred CeEEEEEEc--CCchHHHHHHHHHHHHHhCCCee
Confidence 688877544 33689999999999999999443
No 307
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=44.73 E-value=2e+02 Score=25.37 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=23.6
Q ss_pred CcEE-EEcCCCCCCChHHHHHHHhCCcEEEeCCC
Q 012436 356 AVVG-IHSMIDEHFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 356 ad~~-v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
+|.+ +.|...+...-.+-++...|+|||..+..
T Consensus 56 ~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 56 VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp ESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred CCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 5754 45555555555677888899999998866
No 308
>PRK06756 flavodoxin; Provisional
Probab=44.69 E-value=19 Score=29.20 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=24.8
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLD 69 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~ 69 (464)
|||+++..+ ..|-++.++..+++.|.+.|++++
T Consensus 2 mkv~IiY~S--~tGnTe~vA~~ia~~l~~~g~~v~ 34 (148)
T PRK06756 2 SKLVMIFAS--MSGNTEEMADHIAGVIRETENEIE 34 (148)
T ss_pred ceEEEEEEC--CCchHHHHHHHHHHHHhhcCCeEE
Confidence 677777433 347899999999999999884433
No 309
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=44.60 E-value=1.3e+02 Score=27.63 Aligned_cols=38 Identities=24% Similarity=0.124 Sum_probs=26.3
Q ss_pred hHHHHHHh--cCcEEEEcCC-CCCCChHHHHHHH--hCCcEEE
Q 012436 347 RDLVKLLG--GAVVGIHSMI-DEHFGISVVEYMA--AGAIPIA 384 (464)
Q Consensus 347 ~~~~~~l~--~ad~~v~ps~-~e~~~~~~~Ea~a--~G~PvI~ 384 (464)
.++.+.+. .+|++|-.|. ...|.--+++.|+ +..|+|-
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 45667777 7788888874 4556666777777 4566664
No 310
>COG1647 Esterase/lipase [General function prediction only]
Probab=44.58 E-value=79 Score=27.71 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=23.6
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESP 66 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~ 66 (464)
.-++++|.+. |..+-+..|+++|++.|+
T Consensus 16 ~AVLllHGFT----Gt~~Dvr~Lgr~L~e~Gy 43 (243)
T COG1647 16 RAVLLLHGFT----GTPRDVRMLGRYLNENGY 43 (243)
T ss_pred EEEEEEeccC----CCcHHHHHHHHHHHHCCc
Confidence 4577778776 888999999999999994
No 311
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=44.51 E-value=2e+02 Score=26.19 Aligned_cols=37 Identities=5% Similarity=-0.041 Sum_probs=23.9
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
|||++.....-.. .-+..|+++|.+.| +|+++.+..+
T Consensus 1 M~ILlTNDDGi~a----pGi~aL~~al~~~g---~V~VvAP~~e 37 (266)
T PRK13934 1 MKILVTNDDGVHS----PGLRLLYEFVSPLG---EVDVVAPETP 37 (266)
T ss_pred CeEEEEcCCCCCC----HHHHHHHHHHHhCC---cEEEEccCCC
Confidence 7888876653322 33566778887766 5677777653
No 312
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=44.50 E-value=82 Score=24.08 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=25.2
Q ss_pred HHHHhcCcEEEEcCCC-CCCChHHHH---HHHhCCcEEEeCCC
Q 012436 350 VKLLGGAVVGIHSMID-EHFGISVVE---YMAAGAIPIAHNSA 388 (464)
Q Consensus 350 ~~~l~~ad~~v~ps~~-e~~~~~~~E---a~a~G~PvI~~~~~ 388 (464)
.+.+.+||++|..... ..-+-+.+| |.+.|+||++-...
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 3678899988765332 122334444 77889999997644
No 313
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=44.32 E-value=50 Score=27.31 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=31.0
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChH--HHHHHHhCCcEEEeCCCCCcccee
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGIS--VVEYMAAGAIPIAHNSAGPKMDIV 395 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~--~~Ea~a~G~PvI~~~~~~~~~~~v 395 (464)
.-.-....||.+|... .++|.- +.|++..++|++.-+..|...+++
T Consensus 84 Rk~~m~~~sda~Ivlp--GG~GTL~E~~~a~~~~kpv~~l~~~g~~~~~l 131 (159)
T TIGR00725 84 RNFILVRSADVVVSVG--GGYGTAIEILGAYALGGPVVVLRGTGGWTDRL 131 (159)
T ss_pred HHHHHHHHCCEEEEcC--CchhHHHHHHHHHHcCCCEEEEECCCcchHHH
Confidence 4455567789876542 355543 799999999998877665544443
No 314
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=44.19 E-value=1.1e+02 Score=28.57 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=26.5
Q ss_pred hHHHHHHhcCcEEEE--cCCCCC---CChHHHHHHHhCCcEEEeCCC
Q 012436 347 RDLVKLLGGAVVGIH--SMIDEH---FGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~--ps~~e~---~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
.++.++++.||++++ |...|+ ++-..++.|--|.-+|-+.-|
T Consensus 188 ~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG 234 (311)
T PRK08410 188 VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRG 234 (311)
T ss_pred ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCc
Confidence 478889999998654 444554 444467777666655544444
No 315
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=44.00 E-value=2.1e+02 Score=25.80 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=24.3
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
|||++.....-. ..-+..|+++|.+.+ +|++..+..+
T Consensus 1 M~ILlTNDDGi~----a~Gi~aL~~~l~~~~---~V~VvAP~~~ 37 (250)
T PRK00346 1 MRILLTNDDGIH----APGIRALAEALRELA---DVTVVAPDRE 37 (250)
T ss_pred CeEEEECCCCCC----ChhHHHHHHHHHhCC---CEEEEeCCCC
Confidence 788887765432 234667788888763 5777777653
No 316
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=43.81 E-value=2.2e+02 Score=26.52 Aligned_cols=78 Identities=14% Similarity=0.025 Sum_probs=46.8
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
+.++.++|.. .+=..-++.++..+ ++++.+++...........+.+++.+++.|. .+... ++
T Consensus 148 g~~v~~vGd~--~~v~~Sl~~~l~~~---------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~~-----~d 209 (304)
T TIGR00658 148 GVKVVYVGDG--NNVCNSLMLAGAKL---------GMDVVVATPEGYEPDADIVKKAQEIAKENGG--SVELT-----HD 209 (304)
T ss_pred CcEEEEEeCC--CchHHHHHHHHHHc---------CCEEEEECCchhcCCHHHHHHHHHHHHHcCC--eEEEE-----cC
Confidence 3678899975 22233344444433 7899999964333233445555555655442 23322 56
Q ss_pred HHHHHhcCcEEEEcCC
Q 012436 349 LVKLLGGAVVGIHSMI 364 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps~ 364 (464)
+.+.+..||++....|
T Consensus 210 ~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 210 PVEAVKGADVIYTDVW 225 (304)
T ss_pred HHHHhCCCCEEEEcCc
Confidence 7788999999887653
No 317
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=43.61 E-value=1.2e+02 Score=28.85 Aligned_cols=56 Identities=13% Similarity=0.219 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.++++.-+..++...+.-+.+||+|+-. ..+++..++..+...| .+|.+.++..
T Consensus 133 tQaLaDl~Ti~e~~g~g~~l~glkv~~vGD-------~~~v~~Sl~~~~~~~g--~~v~~~~P~~ 188 (338)
T PRK02255 133 TQELGDLFTMIEHLPEGKKLEDCKVVFVGD-------ATQVCVSLMFIATKMG--MDFVHFGPKG 188 (338)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCEEEEECC-------CchHHHHHHHHHHhCC--CEEEEECCCc
Confidence 689999988876653112345689999833 2468888899999998 8888888753
No 318
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=43.34 E-value=1.9e+02 Score=25.11 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=34.3
Q ss_pred ccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 27 HNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 27 ~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
||.++..+|||..+..+.-.. .|.-+..+++.|.+.+-.++++.|..
T Consensus 100 hRqnk~~~~riVvFvGSpi~e--~ekeLv~~akrlkk~~Vaidii~FGE 146 (259)
T KOG2884|consen 100 HRQNKNQKQRIVVFVGSPIEE--SEKELVKLAKRLKKNKVAIDIINFGE 146 (259)
T ss_pred hhcCCCcceEEEEEecCcchh--hHHHHHHHHHHHHhcCeeEEEEEecc
Confidence 788888889998765544333 66678889999999995556555543
No 319
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=43.15 E-value=2.3e+02 Score=27.14 Aligned_cols=100 Identities=15% Similarity=0.121 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhcC----
Q 012436 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGA---- 356 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~a---- 356 (464)
++.+.++++..++. ...+.+......+.+.++..++-+.+.+.|. +.|.+. |...+.++.++++..
T Consensus 112 l~~~~~~i~~ak~~------g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga-~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 112 LERLARLVSFARDR------GLFVSVGGEDASRADPDFLVELAEVAAEAGA-DRFRFADTVGILDPFSTYELVRALRQAV 184 (365)
T ss_pred HHHHHHHHHHHHhC------CCEEEEeecCCCCCCHHHHHHHHHHHHHcCc-CEEEEcccCCCCCHHHHHHHHHHHHHhc
Confidence 34444555555443 3333333322333445666666666667763 456553 666677766665442
Q ss_pred cEEEEcCCCCCCChH---HHHHHHhCCcEEEeCCCCC
Q 012436 357 VVGIHSMIDEHFGIS---VVEYMAAGAIPIAHNSAGP 390 (464)
Q Consensus 357 d~~v~ps~~e~~~~~---~~Ea~a~G~PvI~~~~~~~ 390 (464)
++-+.-..+..+|+. .++|+.+|.-.|-+...|.
T Consensus 185 ~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~Gi 221 (365)
T TIGR02660 185 DLPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGL 221 (365)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecc
Confidence 333333335556655 4788888998887766665
No 320
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=43.06 E-value=1.6e+02 Score=27.54 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=17.9
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPD 67 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~ 67 (464)
|||+|+ |...+.....++|.+.|++
T Consensus 1 mkIvf~--------Gs~~~a~~~L~~L~~~~~~ 25 (313)
T TIGR00460 1 LRIVFF--------GTPTFSLPVLEELREDNFE 25 (313)
T ss_pred CEEEEE--------CCCHHHHHHHHHHHhCCCc
Confidence 788886 4555666777888888843
No 321
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=42.97 E-value=45 Score=27.54 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHHHhc-CcEEEEcC--C--CCCCChH--HHHHHHhCCcEEEeCCCCC
Q 012436 348 DLVKLLGG-AVVGIHSM--I--DEHFGIS--VVEYMAAGAIPIAHNSAGP 390 (464)
Q Consensus 348 ~~~~~l~~-ad~~v~ps--~--~e~~~~~--~~Ea~a~G~PvI~~~~~~~ 390 (464)
.+...+.. +|++|+.- . .+|-|+. +.+|++.|+||++.-....
T Consensus 85 ~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~ 134 (159)
T PF10649_consen 85 ALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRN 134 (159)
T ss_pred HHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHH
Confidence 34444544 89988874 2 3355544 7999999999999754433
No 322
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=42.90 E-value=2.5e+02 Score=25.27 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhcC----
Q 012436 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGA---- 356 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~a---- 356 (464)
++.+.++++..++. ...+.+......+.+.++..++-+.+.+.|. +.|.+. |...++++.+++...
T Consensus 109 ~~~~~~~i~~a~~~------G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 109 LDQLRRLVGRAKDR------GLFVSVGAEDASRADPDFLIEFAEVAQEAGA-DRLRFADTVGILDPFTTYELIRRLRAAT 181 (259)
T ss_pred HHHHHHHHHHHHHC------CCeEEEeeccCCCCCHHHHHHHHHHHHHCCC-CEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 44555666665554 3333333322222344556666666666664 456653 777777877776643
Q ss_pred --cEEEEcCCCCCCChH---HHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHH
Q 012436 357 --VVGIHSMIDEHFGIS---VVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKI 420 (464)
Q Consensus 357 --d~~v~ps~~e~~~~~---~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l 420 (464)
.+.++. +..+|+. .++|+..|+-.|-+...|.. + ..|- ...++++..+...
T Consensus 182 ~~~l~~H~--Hn~~Gla~An~laAi~aG~~~vd~s~~G~G-~--------~aGN--~~tE~lv~~l~~~ 237 (259)
T cd07939 182 DLPLEFHA--HNDLGLATANTLAAVRAGATHVSVTVNGLG-E--------RAGN--AALEEVVMALKHL 237 (259)
T ss_pred CCeEEEEe--cCCCChHHHHHHHHHHhCCCEEEEeccccc-c--------cccC--cCHHHHHHHHHHh
Confidence 344444 4555555 48899999998888877763 1 1221 2577888888776
No 323
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=42.76 E-value=1.1e+02 Score=27.75 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=25.9
Q ss_pred CCcchhhHHHHHHhhhhCCCCceEEEcccCCC
Q 012436 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDA 79 (464)
Q Consensus 48 GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ 79 (464)
||+..++ +.++++.+..++..|-+++++...
T Consensus 130 GGA~hfa-~~i~~Ire~~P~t~iEvL~PDF~G 160 (306)
T COG0320 130 GGAQHFA-ECIRAIRELNPQTTIEVLTPDFRG 160 (306)
T ss_pred cchHHHH-HHHHHHHhhCCCceEEEeCccccC
Confidence 4787777 789999999999999999988743
No 324
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=42.20 E-value=65 Score=29.64 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=23.2
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
|||+++ ||....-..+.+.|.+.| ++++.++
T Consensus 1 MriLI~-------GasG~lG~~l~~~l~~~~--~~v~~~~ 31 (286)
T PF04321_consen 1 MRILIT-------GASGFLGSALARALKERG--YEVIATS 31 (286)
T ss_dssp EEEEEE-------TTTSHHHHHHHHHHTTTS--EEEEEES
T ss_pred CEEEEE-------CCCCHHHHHHHHHHhhCC--CEEEEeC
Confidence 888887 556666678889999887 6666654
No 325
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=42.17 E-value=1.1e+02 Score=28.44 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.++++..+-.++ ++-+.+||+|+-. ..+++..++..+...| .+|.+.++..
T Consensus 129 tQaL~Dl~Ti~e~~---g~l~g~kva~vGD-------~~~v~~S~~~~~~~~g--~~v~~~~P~~ 181 (302)
T PRK14805 129 CQALADFLTLAEQF---GDVSKVKLAYVGD-------GNNVTHSLMYGAAILG--ATMTVICPPG 181 (302)
T ss_pred HHHHHHHHHHHHHh---CCcCCcEEEEEcC-------CCccHHHHHHHHHHcC--CEEEEECCch
Confidence 68999988887654 3456689999833 2457788889999998 7888887654
No 326
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=42.10 E-value=1.5e+02 Score=22.44 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
|.+.++++++. ..+.++|+...... +..+.+.+.++..+++ .+.+ .+.+|+...+....+.+..
T Consensus 21 G~~~v~~aik~---------gk~~lVI~A~D~s~---~~kkki~~~~~~~~vp-~~~~---~t~~eLg~a~Gk~~~~~ia 84 (104)
T PRK05583 21 GYNKCEEAIKK---------KKVYLIIISNDISE---NSKNKFKNYCNKYNIP-YIEG---YSKEELGNAIGRDEIKILG 84 (104)
T ss_pred cHHHHHHHHHc---------CCceEEEEeCCCCH---hHHHHHHHHHHHcCCC-EEEe---cCHHHHHHHhCCCCeEEEE
Confidence 44555555543 26777777754322 4567788877776654 2223 4569999999887655555
Q ss_pred CCCCCCChHHHHHH
Q 012436 363 MIDEHFGISVVEYM 376 (464)
Q Consensus 363 s~~e~~~~~~~Ea~ 376 (464)
-..+++.-.+++.+
T Consensus 85 i~d~g~a~~l~~~~ 98 (104)
T PRK05583 85 VKDKNMAKKLLKLW 98 (104)
T ss_pred EeChHHHHHHHHHH
Confidence 45677777776654
No 327
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=41.84 E-value=3.4e+02 Score=26.46 Aligned_cols=161 Identities=13% Similarity=0.035 Sum_probs=85.2
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCc-------cCCCCCCCCCcEEEEEecc--CCCCChHHHH
Q 012436 219 GSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQ-------VLPLERSTEYPAIISVAQF--RPEKAHPLQL 288 (464)
Q Consensus 219 ~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~-------~~~~~~~~~~~~i~~~G~~--~~~K~~~~ll 288 (464)
+.-.|.|+--.+...+.+.+.... ..+...|...+-.+... ..-.....-++..+....+ ....|.+..+
T Consensus 61 l~E~d~VfGg~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~ 140 (410)
T cd01968 61 LSEKDVIFGGEKKLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDAVCKTASEKFGIPVIPVHSPGFVGNKNLGNKLAC 140 (410)
T ss_pred CCccceeeccHHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEECCCcccChhHHHHHHH
Confidence 355577777666666666655443 33443333322222111 0000001111222222222 2345777777
Q ss_pred HHHHHHHHHhcC--CCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCC
Q 012436 289 EAFSVALRKLDA--DLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDE 366 (464)
Q Consensus 289 ~a~~~l~~~~~~--~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e 366 (464)
+++-........ ...+-.+.|+|...... -.++++++.+++|+..+..+.+..+.+|+.+ +.+|.+-|..+.
T Consensus 141 ~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~---d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~-~~~A~lniv~~~-- 214 (410)
T cd01968 141 EALLDHVIGTEEPEPLTPYDINLIGEFNVAG---ELWGVKPLLEKLGIRVLASITGDSRVDEIRR-AHRAKLNVVQCS-- 214 (410)
T ss_pred HHHHHHhcCCCCcccCCCCcEEEECCCCCcc---cHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-hhhCcEEEEEch--
Confidence 666544321100 00145788898643321 2478999999999987778888777788866 556666554321
Q ss_pred CCChHHHHHH--HhCCcEEEe
Q 012436 367 HFGISVVEYM--AAGAIPIAH 385 (464)
Q Consensus 367 ~~~~~~~Ea~--a~G~PvI~~ 385 (464)
..+..+.+.| -+|+|.+..
T Consensus 215 ~~~~~~a~~L~~~fGip~~~~ 235 (410)
T cd01968 215 KSMIYLARKMEEKYGIPYIEV 235 (410)
T ss_pred hHHHHHHHHHHHHhCCCeEec
Confidence 2234456666 479998863
No 328
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.82 E-value=1.9e+02 Score=25.81 Aligned_cols=81 Identities=6% Similarity=-0.166 Sum_probs=52.4
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEE
Q 012436 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGI 360 (464)
Q Consensus 281 ~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v 360 (464)
..|++.+++.+... .+.-+++-+-+-+ ..+..+++.+.++++|+..-+.+.+..|.+++..+++.+|-++
T Consensus 87 ~~~~~~~i~~~~~~---------Gadgvii~dlp~e-~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l 156 (244)
T PRK13125 87 VDSLDNFLNMARDV---------GADGVLFPDLLID-YPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFI 156 (244)
T ss_pred hhCHHHHHHHHHHc---------CCCEEEECCCCCC-cHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEE
Confidence 44777777777654 4555555432211 1133567888999999987677777778899999999998655
Q ss_pred EcCCCCCCChH
Q 012436 361 HSMIDEHFGIS 371 (464)
Q Consensus 361 ~ps~~e~~~~~ 371 (464)
.-+...++|..
T Consensus 157 ~msv~~~~g~~ 167 (244)
T PRK13125 157 YYGLRPATGVP 167 (244)
T ss_pred EEEeCCCCCCC
Confidence 33544444433
No 329
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=41.59 E-value=53 Score=30.33 Aligned_cols=38 Identities=11% Similarity=-0.116 Sum_probs=21.2
Q ss_pred HHHHhhhcCCcEEEecccccccchhhhccC-ceEEEEee
Q 012436 132 SWEALCKFTPLYYFDTSGYAFTYPLARIFG-CRVICYTH 169 (464)
Q Consensus 132 ~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~-~p~v~~~h 169 (464)
..+.+...+||+|+...............+ +|+|+..=
T Consensus 51 ~~~~l~~~~~DlIi~~gt~aa~~~~~~~~~~iPVVf~~V 89 (294)
T PF04392_consen 51 IARKLKAQKPDLIIAIGTPAAQALAKHLKDDIPVVFCGV 89 (294)
T ss_dssp HHHHHCCTS-SEEEEESHHHHHHHHHH-SS-S-EEEECE
T ss_pred HHHHHhcCCCCEEEEeCcHHHHHHHHhcCCCcEEEEEec
Confidence 334567789999996555443322333556 99988654
No 330
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=41.59 E-value=3.3e+02 Score=26.14 Aligned_cols=96 Identities=11% Similarity=-0.039 Sum_probs=59.5
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC--------ccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHH
Q 012436 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK--------SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLL 353 (464)
Q Consensus 282 K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~--------~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l 353 (464)
..-+.+++.++.++.. .+++...|.-..+ -..+....+.+.++++|++ .+.-..+.+++..+.
T Consensus 129 E~~~~~~~~A~~lk~~------g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~---~~t~v~d~~~~~~l~ 199 (360)
T PRK12595 129 ESYEQVEAVAKALKAK------GLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLA---VISEIVNPADVEVAL 199 (360)
T ss_pred cCHHHHHHHHHHHHHc------CCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCC---EEEeeCCHHHHHHHH
Confidence 3456677777777653 5566665532111 1235567889999999876 222333445666665
Q ss_pred hcCcEEEEcCCCCCCChHHHHHH-HhCCcEEEeCC
Q 012436 354 GGAVVGIHSMIDEHFGISVVEYM-AAGAIPIAHNS 387 (464)
Q Consensus 354 ~~ad~~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~ 387 (464)
..+|++-.+|. +-....+++++ ..|+||+.+.-
T Consensus 200 ~~vd~lkI~s~-~~~n~~LL~~~a~~gkPVilk~G 233 (360)
T PRK12595 200 DYVDVIQIGAR-NMQNFELLKAAGRVNKPVLLKRG 233 (360)
T ss_pred HhCCeEEECcc-cccCHHHHHHHHccCCcEEEeCC
Confidence 66999988874 22235665555 56999999874
No 331
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=41.58 E-value=2.6e+02 Score=24.91 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=53.1
Q ss_pred CcEEEEEcCCCC-CccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCC----------CCCCChHH
Q 012436 304 RPRLQFVGSCRN-KSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI----------DEHFGISV 372 (464)
Q Consensus 304 ~~~l~i~G~~~~-~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~----------~e~~~~~~ 372 (464)
.-++.++-.... .+...|.+..++..+++|.. +..+-.. ++..+.+..||+++++-- ..++--.+
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~--v~~l~~~--~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l 106 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIE--VTGIHRV--ADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPI 106 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCE--EEEeccc--hhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHH
Confidence 345666665432 34567788888888888864 4444332 566788999997776621 11222335
Q ss_pred HHHHHhCCcEEEeCCCC
Q 012436 373 VEYMAAGAIPIAHNSAG 389 (464)
Q Consensus 373 ~Ea~a~G~PvI~~~~~~ 389 (464)
-|+...|+|++.+..|.
T Consensus 107 ~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 107 REAVKNGTPYIGWSAGA 123 (233)
T ss_pred HHHHHCCCEEEEECHHH
Confidence 68889999998877664
No 332
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=41.36 E-value=86 Score=27.89 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC
Q 012436 288 LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD 335 (464)
Q Consensus 288 l~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~ 335 (464)
...|+.+.++.+. |+++++++|+|.+ -++.++.++++
T Consensus 216 ~~cFe~I~~Rfg~--p~~~f~~IGDG~e---------Ee~aAk~l~wP 252 (274)
T TIGR01658 216 LQCFKWIKERFGH--PKVRFCAIGDGWE---------ECTAAQAMNWP 252 (274)
T ss_pred HHHHHHHHHHhCC--CCceEEEeCCChh---------HHHHHHhcCCC
Confidence 5678888888765 8999999999964 23556667665
No 333
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=41.35 E-value=3.2e+02 Score=25.91 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=38.8
Q ss_pred eccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC-CcEEEcc
Q 012436 276 AQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYK 342 (464)
Q Consensus 276 G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~~g 342 (464)
=-+....+++.++++.....++. |.++++++|+. +++++.++++++. +++.++.
T Consensus 7 DamGgD~~p~~vl~aa~~a~~~~----~~~~~iLvG~~---------~~I~~~l~~~~~~~~~~~Iv~ 61 (334)
T PRK05331 7 DAMGGDFGPEVVVPGALQALKEH----PDLEIILVGDE---------EKIKPLLAKKPDLKERIEIVH 61 (334)
T ss_pred EcCCCccCHHHHHHHHHHHHhcC----CCeEEEEEeCH---------HHHHHHHHhcCCCcCCcEEEe
Confidence 34567889999999998888775 46899999975 5677777666542 3455553
No 334
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=41.34 E-value=2.3e+02 Score=27.38 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHHHHHh--cCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcE
Q 012436 281 EKAHPLQLEAFSVALRKL--DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVV 358 (464)
Q Consensus 281 ~K~~~~ll~a~~~l~~~~--~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~ 358 (464)
..|.+..++++.+..... .....+-.+.++|..+... ...++++++.+++|+..+..+.+..+-+|+.+ +.+|.+
T Consensus 127 ~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~--~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~-~~~A~~ 203 (399)
T cd00316 127 SAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGG--GDLRELKRLLEEMGIRVNALFDGGTTVEELRE-LGNAKL 203 (399)
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCch--hhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHh-hccCcE
Confidence 357788887777544321 0111245788999765432 23588999999999987777766566788876 555665
Q ss_pred EEEcCCCCCCChHHHHHHH--hCCcEEEeC
Q 012436 359 GIHSMIDEHFGISVVEYMA--AGAIPIAHN 386 (464)
Q Consensus 359 ~v~ps~~e~~~~~~~Ea~a--~G~PvI~~~ 386 (464)
.+..+. -++....|.|. +|+|-+...
T Consensus 204 nlv~~~--~~g~~~a~~l~~~~g~p~~~~~ 231 (399)
T cd00316 204 NLVLCR--ESGLYLARYLEEKYGIPYILIN 231 (399)
T ss_pred EEEecH--hHHHHHHHHHHHHhCCCeEEeC
Confidence 554432 13555666663 799988876
No 335
>PRK06932 glycerate dehydrogenase; Provisional
Probab=41.31 E-value=99 Score=28.95 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=27.6
Q ss_pred hHHHHHHhcCcEEEE--cCCCCC---CChHHHHHHHhCCcEEEeCCCC
Q 012436 347 RDLVKLLGGAVVGIH--SMIDEH---FGISVVEYMAAGAIPIAHNSAG 389 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~--ps~~e~---~~~~~~Ea~a~G~PvI~~~~~~ 389 (464)
.++.++++.||++++ |...++ ++-..++.|--|.-+|-+.-|+
T Consensus 189 ~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 236 (314)
T PRK06932 189 TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGP 236 (314)
T ss_pred CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCcc
Confidence 468899999998764 444444 3444677776676555554443
No 336
>PRK10494 hypothetical protein; Provisional
Probab=41.27 E-value=1.9e+02 Score=26.18 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCc-EEEccCC--Chh---HHHHHHhcCcE
Q 012436 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGN-VEFYKNL--LYR---DLVKLLGGAVV 358 (464)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~-v~~~g~~--~~~---~~~~~l~~ad~ 358 (464)
+.+.++++..++. |..++++.|+....+.....+..++.+.++|+++. +...+.- +.+ ...+++....+
T Consensus 107 ~Rl~~a~~L~r~~-----~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~i 181 (259)
T PRK10494 107 PRLTEGIRLWRAN-----PGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPF 181 (259)
T ss_pred HHHHHHHHHHHhC-----CCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCE
Confidence 5677777665553 47788888864322222334667778888999865 4443322 222 33344444457
Q ss_pred EEEcCCCCCCChHHHHHHHhCCcEEEeCCC
Q 012436 359 GIHSMIDEHFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 359 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
++.+|. -..+.+...+-..|..|+...++
T Consensus 182 iLVTsa-~Hm~RA~~~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 182 LLVTSA-SHLPRAMIFFQQEGLNPLPAPAN 210 (259)
T ss_pred EEECCH-HHHHHHHHHHHHcCCceeecCCc
Confidence 777752 34456667777789988876654
No 337
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=41.08 E-value=1.9e+02 Score=25.41 Aligned_cols=75 Identities=11% Similarity=0.029 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
+++..++.+... ....+.+-.... ....++-+.++++|....+.+-+..|.+.+..++...|.++.-
T Consensus 69 ~p~~~i~~~~~~---------gad~i~~H~Ea~----~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvM 135 (220)
T PRK08883 69 PVDRIIPDFAKA---------GASMITFHVEAS----EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLM 135 (220)
T ss_pred CHHHHHHHHHHh---------CCCEEEEcccCc----ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEE
Confidence 577777777665 333333332211 1235677778888888888888888999999999999977665
Q ss_pred CCCCCCCh
Q 012436 363 MIDEHFGI 370 (464)
Q Consensus 363 s~~e~~~~ 370 (464)
+..-|||.
T Consensus 136 tV~PGfgG 143 (220)
T PRK08883 136 SVNPGFGG 143 (220)
T ss_pred EecCCCCC
Confidence 55455553
No 338
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=40.67 E-value=4.1e+02 Score=27.00 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=54.3
Q ss_pred CcEEEEEcCCCC-CccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHH--hCC
Q 012436 304 RPRLQFVGSCRN-KSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMA--AGA 380 (464)
Q Consensus 304 ~~~l~i~G~~~~-~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a--~G~ 380 (464)
+-.+.|+|..+. .....-..+++++.+++|+..|+.+.+..+.+|+.. +..|++-|..+.. .+..+.|+|. +|+
T Consensus 158 ~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~-l~~A~~nivl~~~--~g~~~A~~Lee~fGi 234 (519)
T PRK02910 158 RPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKR-LPAAWFNVVLYRE--IGESAARYLEREFGQ 234 (519)
T ss_pred CCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-cccCcEEEEeCHH--HHHHHHHHHHHHhCC
Confidence 346888887432 112234578999999999998888888777788865 5667766655322 4566777754 799
Q ss_pred cEEEe
Q 012436 381 IPIAH 385 (464)
Q Consensus 381 PvI~~ 385 (464)
|.+..
T Consensus 235 P~i~~ 239 (519)
T PRK02910 235 PYVKT 239 (519)
T ss_pred ccccc
Confidence 98763
No 339
>COG1273 Ku-homolog [Replication, recombination, and repair]
Probab=40.35 E-value=43 Score=29.93 Aligned_cols=129 Identities=11% Similarity=0.135 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChH-HHHHHHhCC------cEEEeCCCCCcccee
Q 012436 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGIS-VVEYMAAGA------IPIAHNSAGPKMDIV 395 (464)
Q Consensus 323 ~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~-~~Ea~a~G~------PvI~~~~~~~~~~~v 395 (464)
++++....+. ..-+.+..|+|.+++..+|-..-.++.|....+-..+ +-|||+.-. -||.+... .-++
T Consensus 79 eel~s~~~es--~kti~I~~Fvp~~eId~iyfD~pYYl~Pd~~g~~af~lLReam~~~~~~aIar~vl~~Rer---~v~L 153 (278)
T COG1273 79 EELESVPLES--TKTIEIEAFVPRDEIDPIYFDKPYYLAPDKVGEKAFALLREAMAETKKVAIARLVLRRRER---LVLL 153 (278)
T ss_pred HHHhhccccc--cceEeEEeecCHhhcCceeecCceeecCCCCcchHHHHHHHHHHHcCcchhhhhhhhccce---eEEE
Confidence 5666655443 2468899999999999999999999999743322333 578886532 22222211 1234
Q ss_pred cccCCccceeecC---------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhh
Q 012436 396 LEEDGQQTGFLAQ---------NAEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPILCH 461 (464)
Q Consensus 396 ~~~~~~~~g~~~~---------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~ 461 (464)
.. .++|++.. +++++-..|-..-. |++..+ +.+.-.... ..|+.+.+.+.|.+.+.+++..
T Consensus 154 rp---~~~glv~~TL~~~dEVRs~d~~f~~i~~~~~-d~eml~-lA~~lI~~~~~~fdp~~y~D~y~~aL~elI~a 224 (278)
T COG1273 154 RP---RGKGLVLTTLRYPDEVRSPDEYFPGIPDIKI-DPEMLE-LAKQLIDKKTGTFDPDEYEDRYQEALMELIEA 224 (278)
T ss_pred Ee---cCCcEEEEEecCchhccChhhhcCCCCcccC-CHHHHH-HHHHHHHHhcCCCChHHccCHHHHHHHHHHHH
Confidence 44 55665431 45543333333323 554443 333333333 6799999999888888877754
No 340
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=39.89 E-value=2.6e+02 Score=25.38 Aligned_cols=106 Identities=13% Similarity=0.173 Sum_probs=66.3
Q ss_pred hcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhc
Q 012436 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLD 299 (464)
Q Consensus 220 ~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~ 299 (464)
++.|.--.-|+|..+.+++ -...++||.+.....+....+. +--.|+|- -||+..++..+..|.+.+-
T Consensus 6 RRTDIPAfY~~Wf~nRl~~------G~v~vrNPfn~~qvsrv~l~p~-~Vd~iVFW-----TKnp~P~l~~L~~l~~~gy 73 (266)
T PF08902_consen 6 RRTDIPAFYSDWFMNRLRE------GYVLVRNPFNPHQVSRVSLSPE-DVDCIVFW-----TKNPAPFLPYLDELDERGY 73 (266)
T ss_pred cCCCcccchHHHHHHHhhC------CEEEeECCCCCCceEEEEcChh-cceEEEEe-----cCCcHHHHhhHHHHHhCCC
Confidence 5556666667777776643 4567899998777665544332 22234444 3788999999999877421
Q ss_pred CCCCCcEEEEEcCCCCCc-----cHHHHHHHHHHHHhcCCCCcEEE
Q 012436 300 ADLPRPRLQFVGSCRNKS-----DEERLQSLKDKSIELKVDGNVEF 340 (464)
Q Consensus 300 ~~~p~~~l~i~G~~~~~~-----~~~~~~~l~~~~~~~~l~~~v~~ 340 (464)
. -=+++.|.|.+.+-| ..+..+.++++++.+| +++|.+
T Consensus 74 ~--~yfq~Tit~Y~~~lEp~vP~~~~~i~~f~~Ls~~iG-~~rViW 116 (266)
T PF08902_consen 74 P--YYFQFTITGYGKDLEPNVPPKDERIETFRELSERIG-PERVIW 116 (266)
T ss_pred c--eEEEEEeCCCCccccCCCCCHHHHHHHHHHHHHHHC-CCcEEE
Confidence 0 135677777654322 2346677888888887 455554
No 341
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=39.87 E-value=1.7e+02 Score=27.64 Aligned_cols=63 Identities=11% Similarity=-0.068 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc-CcEEEEcCCCCCCChHHHHHHH-hCCcEEEeCCC
Q 012436 322 LQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG-AVVGIHSMIDEHFGISVVEYMA-AGAIPIAHNSA 388 (464)
Q Consensus 322 ~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~-ad~~v~ps~~e~~~~~~~Ea~a-~G~PvI~~~~~ 388 (464)
.++|.+.++++|+. .+.-..+.+.+.-+-.- +|++=.+| .+-.-..++++++ .|+|||.|.-.
T Consensus 78 ~~~L~~~~~~~Gi~---~~stpfd~~svd~l~~~~v~~~KIaS-~~~~n~pLL~~~A~~gkPvilStGm 142 (329)
T TIGR03569 78 HRELKEYCESKGIE---FLSTPFDLESADFLEDLGVPRFKIPS-GEITNAPLLKKIARFGKPVILSTGM 142 (329)
T ss_pred HHHHHHHHHHhCCc---EEEEeCCHHHHHHHHhcCCCEEEECc-ccccCHHHHHHHHhcCCcEEEECCC
Confidence 46677777766653 22222233444333232 45554453 2333345555443 47777776533
No 342
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=39.86 E-value=2.2e+02 Score=25.19 Aligned_cols=75 Identities=7% Similarity=-0.076 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
+++..++.+... ....+.+-..... ......-+.++++|....+.+-+..|.+.+..++...|.++.-
T Consensus 70 ~P~~~i~~~~~a---------Gad~it~H~Ea~~---~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvM 137 (229)
T PRK09722 70 DPQDYIDQLADA---------GADFITLHPETIN---GQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVM 137 (229)
T ss_pred CHHHHHHHHHHc---------CCCEEEECccCCc---chHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEE
Confidence 567777666655 2333333322110 1234566788888888889999989999999999999976655
Q ss_pred CCCCCCC
Q 012436 363 MIDEHFG 369 (464)
Q Consensus 363 s~~e~~~ 369 (464)
|..-||+
T Consensus 138 sV~PGf~ 144 (229)
T PRK09722 138 TVDPGFA 144 (229)
T ss_pred EEcCCCc
Confidence 5444555
No 343
>PRK09739 hypothetical protein; Provisional
Probab=39.76 E-value=36 Score=29.34 Aligned_cols=38 Identities=8% Similarity=0.088 Sum_probs=26.5
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceE
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCI 71 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~ 71 (464)
+|||+++..+...+|=....+..+++++.+.|++++++
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~ 40 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEEL 40 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 68999997766554335566777788888888555433
No 344
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=39.67 E-value=53 Score=29.32 Aligned_cols=49 Identities=14% Similarity=-0.038 Sum_probs=28.8
Q ss_pred ccCCChhHHHHHHh-----cCcEEEEcCC-CCCCChH-HHHHHHhCCcEEEeCCCCC
Q 012436 341 YKNLLYRDLVKLLG-----GAVVGIHSMI-DEHFGIS-VVEYMAAGAIPIAHNSAGP 390 (464)
Q Consensus 341 ~g~~~~~~~~~~l~-----~ad~~v~ps~-~e~~~~~-~~Ea~a~G~PvI~~~~~~~ 390 (464)
.+.++++.+.+... .+|.++.+.. .-++... -+|.. .|+|||+|+....
T Consensus 162 ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~-lGkPVlsSNqat~ 217 (239)
T TIGR02990 162 MARISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQA-IGKPVVTSNQATA 217 (239)
T ss_pred eeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHH-HCCCEEEHHHHHH
Confidence 56677788777776 3665544421 1122211 24444 7999999986544
No 345
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=39.66 E-value=1.9e+02 Score=27.67 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc-------cCCChhHHHHHHhc
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY-------KNLLYRDLVKLLGG 355 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~-------g~~~~~~~~~~l~~ 355 (464)
|+-.++..+..+..+..+ |.+.|..+..+. ++.-|.++++++++++. ++.++ |+++.+++...-..
T Consensus 326 GITPFis~l~~l~~~~s~--~~V~L~Y~~~n~--e~~~y~~eLr~~~qkl~---~~~lHiiDSs~~g~l~~e~ler~~~~ 398 (438)
T COG4097 326 GITPFISMLFTLAERKSD--PPVHLFYCSRNW--EEALYAEELRALAQKLP---NVVLHIIDSSKDGYLDQEDLERYPDR 398 (438)
T ss_pred CcchHHHHHHhhcccccC--CceEEEEEecCC--chhHHHHHHHHHHhcCC---CeEEEEecCCCCCccCHHHhhccccc
Confidence 566666666666553322 677777776654 34468889999988753 44443 67777777665333
Q ss_pred C---cEEEEcCCCCCCChHHHHHHH
Q 012436 356 A---VVGIHSMIDEHFGISVVEYMA 377 (464)
Q Consensus 356 a---d~~v~ps~~e~~~~~~~Ea~a 377 (464)
. .++++ .|.+++|++.
T Consensus 399 ~~~~sv~fC------GP~~m~dsL~ 417 (438)
T COG4097 399 PRTRSVFFC------GPIKMMDSLR 417 (438)
T ss_pred cCcceEEEE------cCHHHHHHHH
Confidence 3 33333 2555555554
No 346
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=39.63 E-value=89 Score=25.78 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC-----Chh----HHHHHHh
Q 012436 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL-----LYR----DLVKLLG 354 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-----~~~----~~~~~l~ 354 (464)
-..++.+..++.+..+. .+..+++|+... ..+.+++....+|.. +|.....- ..+ -+.++++
T Consensus 17 ~~e~l~~A~~La~~~g~---~v~av~~G~~~~-----~~~~l~~~l~~~G~d-~v~~~~~~~~~~~~~~~~a~~l~~~~~ 87 (164)
T PF01012_consen 17 SLEALEAARRLAEALGG---EVTAVVLGPAEE-----AAEALRKALAKYGAD-KVYHIDDPALAEYDPEAYADALAELIK 87 (164)
T ss_dssp HHHHHHHHHHHHHCTTS---EEEEEEEETCCC-----HHHHHHHHHHSTTES-EEEEEE-GGGTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCC---eEEEEEEecchh-----hHHHHhhhhhhcCCc-EEEEecCccccccCHHHHHHHHHHHHH
Confidence 35667777788776432 688888884332 235666767767754 55544211 122 3444455
Q ss_pred c--CcEEEEcCCCCCCChHHHHHHHhCCcEEEe
Q 012436 355 G--AVVGIHSMIDEHFGISVVEYMAAGAIPIAH 385 (464)
Q Consensus 355 ~--ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 385 (464)
. .|++++++...+-.+...=|..+|.|+++.
T Consensus 88 ~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 88 EEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp HHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred hcCCCEEEEcCcCCCCcHHHHHHHHhCCCccce
Confidence 5 789999987666667777788889988874
No 347
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.60 E-value=1.1e+02 Score=28.31 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=33.9
Q ss_pred hcCcEEEEcCCCCCCChHHHHHH----HhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 354 GGAVVGIHSMIDEHFGISVVEYM----AAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 354 ~~ad~~v~ps~~e~~~~~~~Ea~----a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
..+|+++.- -.+| +++++. ..++|++.-+. |..||+.+ +++++.+++.++++
T Consensus 61 ~~~d~vi~~-GGDG---t~l~~~~~~~~~~~Pvlgin~-------------G~lGFl~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 61 EVCDLVIVV-GGDG---SLLGAARALARHNVPVLGINR-------------GRLGFLTDIRPDELEFKLAEVLD 117 (295)
T ss_pred cCCCEEEEE-eCcH---HHHHHHHHhcCCCCCEEEEeC-------------CcccccccCCHHHHHHHHHHHHc
Confidence 357876644 2222 343433 34678876553 35678877 89999999999986
No 348
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=39.55 E-value=1.3e+02 Score=27.33 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=27.7
Q ss_pred ceEEEecCCCC--CCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 35 TSVAFFHPNTN--DGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 35 mkI~~~~~~~~--~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
|+|+++.-..- ..||....+.+|+++|.+.- ..|+.++..
T Consensus 1 ~~V~ll~EGtYPyv~GGVSsW~~~LI~glpe~~--F~v~~i~a~ 42 (268)
T PF11997_consen 1 MDVCLLTEGTYPYVRGGVSSWVHQLIRGLPEHE--FHVYAIGAN 42 (268)
T ss_pred CeEEEEecCcCCCCCCchhHHHHHHHhcCCCce--EEEEEEeCC
Confidence 78998864332 33899999999999996533 455555554
No 349
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=39.45 E-value=1.1e+02 Score=29.82 Aligned_cols=59 Identities=15% Similarity=0.060 Sum_probs=44.3
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcC
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM 363 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps 363 (464)
+.-=+|+|.-.-....+..++|+++++..|....+..+|.+.+..+.. +...|++|.-+
T Consensus 267 ~~iGlivGTLG~qg~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKLAn-F~eIDvfV~ia 325 (453)
T KOG2648|consen 267 RTIGLIVGTLGRQGNREVLEHLRKLLKAAGKKSYVLALGEINPAKLAN-FPEIDVFVQIA 325 (453)
T ss_pred CeEEEEEecccccCCHHHHHHHHHHHHHcCCceEEEEecCCCHHHhcC-CccccEEEEEe
Confidence 444567776433346678899999999999888888899998877754 55599998754
No 350
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=38.69 E-value=1.5e+02 Score=28.06 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.++++.-+..++. +.-+.+||+|+-. +..+++..++..+...| .++.+.++..
T Consensus 136 tQaL~Dl~Ti~e~~~--g~l~g~kia~vGD------~~~~v~~Sl~~~~~~~g--~~v~~~~P~~ 190 (332)
T PRK04284 136 TQVLADFLTAKEHLK--KPYKDIKFTYVGD------GRNNVANALMQGAAIMG--MDFHLVCPKE 190 (332)
T ss_pred HHHHHHHHHHHHHhc--CCcCCcEEEEecC------CCcchHHHHHHHHHHcC--CEEEEECCcc
Confidence 699999988876521 3456799999832 22367888888899888 7888877653
No 351
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=38.45 E-value=4.3e+02 Score=26.73 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCC-CccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHH--HhCC
Q 012436 304 RPRLQFVGSCRN-KSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM--AAGA 380 (464)
Q Consensus 304 ~~~l~i~G~~~~-~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~--a~G~ 380 (464)
+-.+.|+|..+. .....-..+++++.+.+|+..++.+.+.-+.+|+.. +.+|++-|.++.. .+..+.++| -+|+
T Consensus 158 ~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~-l~~A~~NIv~~~~--~g~~~A~~Le~~fGi 234 (511)
T TIGR01278 158 KPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLAR-LPAAWLNICPYRE--IGLMAAEYLKEKFGQ 234 (511)
T ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh-cccCcEEEEechH--HHHHHHHHHHHHhCC
Confidence 346888886431 111233578999999999998888888767788866 5788887776432 445566666 5699
Q ss_pred cEEE
Q 012436 381 IPIA 384 (464)
Q Consensus 381 PvI~ 384 (464)
|.+.
T Consensus 235 P~i~ 238 (511)
T TIGR01278 235 PYIT 238 (511)
T ss_pred Cccc
Confidence 8875
No 352
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=38.17 E-value=93 Score=28.99 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
+|.+++++.+.-++ +.-+++||+|+-.. .-.+++..++..++..| .++.+.++.
T Consensus 138 tQ~LaDl~Ti~e~~---G~l~g~kv~~vGD~-----~~~~v~~Sl~~~~~~~g--~~~~~~~P~ 191 (305)
T PRK00856 138 TQALLDLLTIREEF---GRLEGLKVAIVGDI-----KHSRVARSNIQALTRLG--AEVRLIAPP 191 (305)
T ss_pred HHHHHHHHHHHHHh---CCCCCCEEEEECCC-----CCCcHHHHHHHHHHHcC--CEEEEECCc
Confidence 69999998887655 34567899998532 12477888889999998 788887764
No 353
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=38.16 E-value=4.2e+02 Score=26.37 Aligned_cols=161 Identities=11% Similarity=0.030 Sum_probs=85.3
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCc-------cCCCCCCCCCcEEEEEecc--CCCCChHHHH
Q 012436 219 GSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQ-------VLPLERSTEYPAIISVAQF--RPEKAHPLQL 288 (464)
Q Consensus 219 ~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~-------~~~~~~~~~~~~i~~~G~~--~~~K~~~~ll 288 (464)
+.-.|.|+--.+...+.+.+.... ..+..+|...+-.+... ..-.....-+.+.+....+ ....|.+..+
T Consensus 96 l~E~dvVfGg~~kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~~v~~e~~~~~~~~vi~v~t~gf~g~~~~G~~~a~ 175 (456)
T TIGR01283 96 LTEKDVIFGGEKKLFHAIREIVERYHPPAVFVYSTCVPGLIGDDLEAVCKAAAEKTGIPVIPVDSEGFYGSKNLGNKLAC 175 (456)
T ss_pred CCcCceEeCCHHHHHHHHHHHHHhCCCCEEEEECCChHHHhcCCHHHHHHHHHHHhCCCEEEEECCCCccchhHHHHHHH
Confidence 355677777666666666655433 33443443332222111 0000001111222222333 2346777777
Q ss_pred HHHHHHHHHhcC------CCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 289 EAFSVALRKLDA------DLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 289 ~a~~~l~~~~~~------~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
+++-........ ...+-.+.++|...... -..+++++.+++|+..+..+.|..+.+|+.. +.+|.+-|..
T Consensus 176 ~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~---d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~-~~~A~lniv~ 251 (456)
T TIGR01283 176 DALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAG---EFWHVKPLLEKLGIRVLATITGDSRYAEVQT-AHRAKLNMVQ 251 (456)
T ss_pred HHHHHHHhccCCcccccccCCCCcEEEEcCCCCcc---cHHHHHHHHHHcCCeEEEEeCCCCcHHHHHh-cccCcEEEEE
Confidence 777543322100 00134688888643221 2368999999999988878888766677754 4555655543
Q ss_pred CCCCCCChHHHHHH--HhCCcEEEe
Q 012436 363 MIDEHFGISVVEYM--AAGAIPIAH 385 (464)
Q Consensus 363 s~~e~~~~~~~Ea~--a~G~PvI~~ 385 (464)
+. ..+..+.+.| -+|+|.+..
T Consensus 252 ~~--~~~~~~a~~L~e~~GiP~~~~ 274 (456)
T TIGR01283 252 CS--KSMINLARKMEEKYGIPYFEG 274 (456)
T ss_pred CH--hHHHHHHHHHHHHcCCCEEec
Confidence 21 1234567777 469998863
No 354
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=38.04 E-value=3.1e+02 Score=25.94 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=47.1
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++..|.++|-.. ..=..-++.++..+ ++.+.+++.......+...+..++.++..|. ++.+. +
T Consensus 154 ~g~kia~vGD~~-~~v~~Sl~~~~~~~---------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~~-----~ 216 (332)
T PRK04284 154 KDIKFTYVGDGR-NNVANALMQGAAIM---------GMDFHLVCPKELNPDDELLNKCKEIAAETGG--KITIT-----D 216 (332)
T ss_pred CCcEEEEecCCC-cchHHHHHHHHHHc---------CCEEEEECCccccCCHHHHHHHHHHHHHcCC--eEEEE-----c
Confidence 347899999652 22223334444433 7899999864332233444555555555542 34432 5
Q ss_pred HHHHHHhcCcEEEEcCC
Q 012436 348 DLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~ 364 (464)
++.+.+..||++....|
T Consensus 217 d~~ea~~~aDvvy~~~w 233 (332)
T PRK04284 217 DIDEGVKGSDVIYTDVW 233 (332)
T ss_pred CHHHHhCCCCEEEECCc
Confidence 67788999999877654
No 355
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=37.76 E-value=2.9e+02 Score=26.18 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=47.5
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
+..+.|+|-... .=..-++.++..+ ++.+.+++........+..+..++.+++.|. ++.+. ++
T Consensus 156 g~~ia~vGD~~~-~v~~Sl~~~~~~~---------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~i~~~-----~d 218 (336)
T PRK03515 156 EMTLAYAGDARN-NMGNSLLEAAALT---------GLDLRLVAPKACWPEAALVTECRALAQKNGG--NITLT-----ED 218 (336)
T ss_pred CCEEEEeCCCcC-cHHHHHHHHHHHc---------CCEEEEECCchhcCcHHHHHHHHHHHHHcCC--eEEEE-----cC
Confidence 478999996422 1234445554443 7899999864322233444445555555442 34432 56
Q ss_pred HHHHHhcCcEEEEcCC
Q 012436 349 LVKLLGGAVVGIHSMI 364 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps~ 364 (464)
+.+.+..||++...+|
T Consensus 219 ~~ea~~~aDvvytd~W 234 (336)
T PRK03515 219 IAEGVKGADFIYTDVW 234 (336)
T ss_pred HHHHhCCCCEEEecCc
Confidence 7788999999887754
No 356
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=37.72 E-value=31 Score=28.13 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=26.2
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCC
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDL 68 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~ 68 (464)
+|||+++..+.. |.++.++..+++.|.+.|+++
T Consensus 1 M~ki~Ivy~S~t--GnTe~vA~~i~~~l~~~~~~~ 33 (151)
T COG0716 1 MMKILIVYGSRT--GNTEKVAEIIAEELGADGFEV 33 (151)
T ss_pred CCeEEEEEEcCC--CcHHHHHHHHHHHhccCCceE
Confidence 478888755443 789999999999999999544
No 357
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=37.46 E-value=2e+02 Score=24.95 Aligned_cols=91 Identities=14% Similarity=-0.012 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcE--EEc-cCCChhHHHHHHhcCcE
Q 012436 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV--EFY-KNLLYRDLVKLLGGAVV 358 (464)
Q Consensus 282 K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v--~~~-g~~~~~~~~~~l~~ad~ 358 (464)
|=...+..|+.-+.... .-++.++|..+ ...+.+++.++..|-. .| .|+ |.++..... .+..=|+
T Consensus 50 kT~~~L~~A~~~i~~~~-----~~~ILfVgTk~-----~~~~~v~k~A~~~g~~-~v~~RWlgG~LTN~~~~-~~~~Pdl 117 (204)
T PRK04020 50 KTDERIRIAAKFLSRYE-----PEKILVVSSRQ-----YGQKPVQKFAEVVGAK-AITGRFIPGTLTNPSLK-GYIEPDV 117 (204)
T ss_pred HHHHHHHHHHHHHHHhc-----CCeEEEEeCCH-----HHHHHHHHHHHHhCCe-eecCccCCCcCcCcchh-ccCCCCE
Confidence 44455556665555432 45788888764 3345666677666532 12 344 444443332 2335566
Q ss_pred EEEcCCCCCCChHHHHHHHhCCcEEEe
Q 012436 359 GIHSMIDEHFGISVVEYMAAGAIPIAH 385 (464)
Q Consensus 359 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 385 (464)
++.... ..-..++.||.-.|+|+|+-
T Consensus 118 iiv~dp-~~~~~AI~EA~kl~IP~Iai 143 (204)
T PRK04020 118 VVVTDP-RGDAQAVKEAIEVGIPVVAL 143 (204)
T ss_pred EEEECC-cccHHHHHHHHHhCCCEEEE
Confidence 554432 22367899999999999995
No 358
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=37.40 E-value=3.1e+02 Score=24.72 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=23.5
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
|||++.....-.. .-+..|+++|.+ + .+|++..+..+
T Consensus 1 M~ILlTNDDGi~a----~Gi~aL~~~l~~-~--~~V~VvAP~~~ 37 (253)
T PRK13935 1 MNILVTNDDGITS----PGIIILAEYLSE-K--HEVFVVAPDKE 37 (253)
T ss_pred CeEEEECCCCCCC----HHHHHHHHHHHh-C--CcEEEEccCCC
Confidence 7898877654322 235666788865 4 36777777653
No 359
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=37.25 E-value=83 Score=28.41 Aligned_cols=42 Identities=19% Similarity=0.047 Sum_probs=31.3
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCC
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
+++.+++..+|+++..+..+...-.+..|+..|+|+|+...+
T Consensus 52 ~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 52 DDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred CCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 566677778999886665555544568899999999987544
No 360
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=37.05 E-value=2.4e+02 Score=23.39 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=44.1
Q ss_pred hHHHHHHh--cCcEEEEcC-CCCCCChHHHHHHHhCCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHH
Q 012436 347 RDLVKLLG--GAVVGIHSM-IDEHFGISVVEYMAAGAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIV 418 (464)
Q Consensus 347 ~~~~~~l~--~ad~~v~ps-~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~ 418 (464)
++..+.+. ..|++++-. ..+.-|..+++.+....|+|+.......+. .+.. |..+++.. +.+++.+++.
T Consensus 37 ~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~---ga~~~i~kp~~~~~l~~~i~ 113 (196)
T PRK10360 37 REALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNA---GARGFLSKRCSPDELIAAVH 113 (196)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHc---CCcEEEECCCCHHHHHHHHH
Confidence 45545553 357777653 234456667777766778876533222122 2233 56677664 8999999998
Q ss_pred HHHc
Q 012436 419 KIIS 422 (464)
Q Consensus 419 ~l~~ 422 (464)
.+..
T Consensus 114 ~~~~ 117 (196)
T PRK10360 114 TVAT 117 (196)
T ss_pred HHHc
Confidence 8775
No 361
>PLN02778 3,5-epimerase/4-reductase
Probab=37.04 E-value=1.3e+02 Score=27.91 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=22.1
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCC
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPD 67 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~ 67 (464)
+.+|||++. ||..-.=..+++.|.++|++
T Consensus 7 ~~~~kiLVt-------G~tGfiG~~l~~~L~~~g~~ 35 (298)
T PLN02778 7 SATLKFLIY-------GKTGWIGGLLGKLCQEQGID 35 (298)
T ss_pred CCCCeEEEE-------CCCCHHHHHHHHHHHhCCCE
Confidence 456888886 56666667889999999953
No 362
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=37.00 E-value=2.7e+02 Score=23.94 Aligned_cols=92 Identities=11% Similarity=-0.079 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCC-cEEEcc-CCChhHHHHHHhcCcEE
Q 012436 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDG-NVEFYK-NLLYRDLVKLLGGAVVG 359 (464)
Q Consensus 282 K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~-~v~~~g-~~~~~~~~~~l~~ad~~ 359 (464)
|=.+.+..|++-+..-. .-++.++|..+ .....+++.++..|-.. +-.|+| .++.... .-+..=|++
T Consensus 44 kT~~~L~~A~~~i~~i~-----~~~ILfVgtk~-----~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~-~~~~~Pdll 112 (196)
T TIGR01012 44 KTDERLRVAAKFLVRIE-----PEDILVVSARI-----YGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ-KAFREPEVV 112 (196)
T ss_pred HHHHHHHHHHHHHHHhh-----CCeEEEEecCH-----HHHHHHHHHHHHhCCceECCeeCCCCCCCccc-cccCCCCEE
Confidence 44445555555444432 34788898764 23355666666654221 113444 3333221 234556666
Q ss_pred EEcCCCCCCChHHHHHHHhCCcEEEe
Q 012436 360 IHSMIDEHFGISVVEYMAAGAIPIAH 385 (464)
Q Consensus 360 v~ps~~e~~~~~~~Ea~a~G~PvI~~ 385 (464)
++.. ...-..++.||...|+|+|+-
T Consensus 113 iv~d-p~~~~~Av~EA~~l~IP~Iai 137 (196)
T TIGR01012 113 VVTD-PRADHQALKEASEVGIPIVAL 137 (196)
T ss_pred EEEC-CccccHHHHHHHHcCCCEEEE
Confidence 6542 223356899999999999984
No 363
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=36.87 E-value=3.2e+02 Score=24.74 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhc------CcEEEEcCCCCCCChH---HHHHHHhCCcEEEeC
Q 012436 319 EERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGG------AVVGIHSMIDEHFGIS---VVEYMAAGAIPIAHN 386 (464)
Q Consensus 319 ~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~------ad~~v~ps~~e~~~~~---~~Ea~a~G~PvI~~~ 386 (464)
.++..++-+.+.+.|. +.+.+. |...++++.++++. ..+.++. +..+|+. .++|+.+|.=.|-+.
T Consensus 140 ~~~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~--Hn~~Gla~an~~~a~~aG~~~vd~s 216 (262)
T cd07948 140 LVDLLRVYRAVDKLGV-NRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFHG--HNDTGCAIANAYAALEAGATHIDTT 216 (262)
T ss_pred HHHHHHHHHHHHHcCC-CEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEEE--CCCCChHHHHHHHHHHhCCCEEEEe
Confidence 3455566666666663 456553 66777777766654 2244444 5556655 488999999888888
Q ss_pred CCCC
Q 012436 387 SAGP 390 (464)
Q Consensus 387 ~~~~ 390 (464)
..|.
T Consensus 217 ~~Gl 220 (262)
T cd07948 217 VLGI 220 (262)
T ss_pred cccc
Confidence 7776
No 364
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=36.85 E-value=2e+02 Score=22.33 Aligned_cols=57 Identities=11% Similarity=-0.079 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh
Q 012436 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG 354 (464)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~ 354 (464)
+.+-+.++.+++... +++.+.+-|..+ ++..+...++|+. =.|.+..+.+++..++.
T Consensus 65 ~~~~~~~~~L~~~~~---~~i~i~~GG~~~--------~~~~~~~~~~G~d--~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 65 TLFPEVIELLRELGA---GDILVVGGGIIP--------PEDYELLKEMGVA--EIFGPGTSIEEIIDKIR 121 (122)
T ss_pred HHHHHHHHHHHhcCC---CCCEEEEECCCC--------HHHHHHHHHCCCC--EEECCCCCHHHHHHHHh
Confidence 344444555555532 256655555544 2333445566754 34555566677776654
No 365
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=36.84 E-value=1.8e+02 Score=26.91 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC-CChhHHHHHHhcCcEEEE
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN-LLYRDLVKLLGGAVVGIH 361 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~~~~~~l~~ad~~v~ 361 (464)
+.+-..+|++.+.++. ++..++|.++.. +-.++..... .+.+.+.+. -+.+|+. +++.||..|.
T Consensus 189 ~~~Yy~~Ai~~i~~~~----~~~~f~ifSDD~--------~w~k~~l~~~--~~~~~~~~~~~~~~Dl~-lms~C~~~Ii 253 (298)
T PF01531_consen 189 DKDYYKKAIEYIREKV----KNPKFFIFSDDI--------EWCKENLKFS--NGDVYFSGNNSPYEDLY-LMSQCKHFII 253 (298)
T ss_pred CHHHHHHHHHHHHHhC----CCCEEEEEcCCH--------HHHHHHHhhc--CCcEEEECCCCHHHHHH-HHHhCCcEEE
Confidence 3467778888888776 588999999764 3333333322 234566654 4667776 6899999887
Q ss_pred c
Q 012436 362 S 362 (464)
Q Consensus 362 p 362 (464)
+
T Consensus 254 s 254 (298)
T PF01531_consen 254 S 254 (298)
T ss_pred C
Confidence 7
No 366
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=36.69 E-value=2.9e+02 Score=25.38 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=24.2
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
.+++||+++.. |...-+..+.++......+.++..+..+
T Consensus 82 ~~~~ki~vl~S------g~g~nl~~l~~~~~~g~l~~~i~~visn 120 (280)
T TIGR00655 82 DKLKRVAILVS------KEDHCLGDLLWRWYSGELDAEIALVISN 120 (280)
T ss_pred CCCcEEEEEEc------CCChhHHHHHHHHHcCCCCcEEEEEEEc
Confidence 46789998755 3344456677777664445666665544
No 367
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.45 E-value=1.7e+02 Score=27.07 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=36.1
Q ss_pred hcCcEEEEcCCCCCCChHHHHHH----HhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 354 GGAVVGIHSMIDEHFGISVVEYM----AAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 354 ~~ad~~v~ps~~e~~~~~~~Ea~----a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
..+|+.+.- .|=| +++.|. ..++|++.-+. |.-||+.+ +++++.+++.++++
T Consensus 67 ~~~D~vi~l---GGDG-T~L~aa~~~~~~~~PilGIN~-------------G~lGFL~~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 67 QYCDLVAVL---GGDG-TFLSVAREIAPRAVPIIGINQ-------------GHLGFLTQIPREYMTDKLLPVLE 123 (296)
T ss_pred cCCCEEEEE---CCcH-HHHHHHHHhcccCCCEEEEec-------------CCCeEeeccCHHHHHHHHHHHHc
Confidence 468987754 2222 444443 34789888663 45688888 89999999999986
No 368
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=36.38 E-value=2e+02 Score=24.15 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=29.2
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
--|+.+.++++.. =...-+.+++.+|.+.|-+..++++....
T Consensus 33 ~eV~vVamSpgrr-HitkpvCdIt~~LRr~Gi~ts~lvLnaG~ 74 (194)
T TIGR03264 33 NDVVAVAMSPGRR-HITKPVCEITYALREAGIQTSVLVLNAGS 74 (194)
T ss_pred CCEEEEecCcccc-cCCCcHHHHHHHHHHcCCccceEEEecCC
Confidence 4567777766554 46667788888888888777766666543
No 369
>PRK06988 putative formyltransferase; Provisional
Probab=36.34 E-value=2e+02 Score=26.95 Aligned_cols=49 Identities=8% Similarity=-0.035 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCCCCCCChHHHH
Q 012436 324 SLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDEHFGISVVE 374 (464)
Q Consensus 324 ~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~~e~~~~~~~E 374 (464)
.+++.+.++|++ +........+++.+.++. .|+++..++..-.+-.+++
T Consensus 46 ~v~~~A~~~gip--~~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~iip~~il~ 96 (312)
T PRK06988 46 SVAAVAAEHGIP--VITPADPNDPELRAAVAAAAPDFIFSFYYRHMIPVDLLA 96 (312)
T ss_pred HHHHHHHHcCCc--EEccccCCCHHHHHHHHhcCCCEEEEehhccccCHHHHh
Confidence 566777777665 333334434455555543 5666655433333333333
No 370
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=36.30 E-value=1.5e+02 Score=27.36 Aligned_cols=123 Identities=11% Similarity=-0.053 Sum_probs=62.2
Q ss_pred HHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCC----CCCCCCCcEEEE-EeccCCCCChHHHHHH
Q 012436 216 GLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP----LERSTEYPAIIS-VAQFRPEKAHPLQLEA 290 (464)
Q Consensus 216 ~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~----~~~~~~~~~i~~-~G~~~~~K~~~~ll~a 290 (464)
..+++.+|.|+|........+.+.++...++.-++ +...-.... .-.......++. .|.-.-.--...++++
T Consensus 32 l~~L~~aDvI~~edtr~t~~ll~~~~i~~~~~~~~---~~~~~~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~~Lv~~ 108 (287)
T PRK14994 32 LEVLQAVDLIAAEDTRHTGLLLQHFAINARLFALH---DHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRT 108 (287)
T ss_pred HHHHHhCCEEEEeCCcchHHHHhhcCCCCEEEEcc---CCCHHHHHHHHHHHHHCCCeEEEEccCCCCceeCCHHHHHHH
Confidence 34568999999976654455666665433332221 111000000 000122223333 3432222222344444
Q ss_pred HHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC-CcEEEccCCCh------hHHHHHHhcCcEE
Q 012436 291 FSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLLY------RDLVKLLGGAVVG 359 (464)
Q Consensus 291 ~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~~------~~~~~~l~~ad~~ 359 (464)
+... ++.+.++-+. ..+...+...|++ +++.|.|++|. +++.++.+..+-+
T Consensus 109 ~~~~---------gi~v~vIPGi---------SA~~aA~a~sG~~~~~f~f~Gflp~~~~~r~~~L~~l~~~~~t~ 166 (287)
T PRK14994 109 CREA---------GIRVVPLPGP---------CAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKALEAEPRTL 166 (287)
T ss_pred HHHC---------CCCEEEeCCH---------HHHHHHHHHcCCCCCcceEeEECCCCCchHHHHHHHHhcCCCeE
Confidence 4332 6666666543 4556666667764 56888888873 4677777777633
No 371
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=36.24 E-value=1.1e+02 Score=27.96 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=12.1
Q ss_pred HHHhhhcCCcEEEeccc
Q 012436 133 WEALCKFTPLYYFDTSG 149 (464)
Q Consensus 133 ~~~l~~~~~Dvv~~~~~ 149 (464)
.+.+++.+||+||+...
T Consensus 43 ~~~i~~~~PDvVIn~AA 59 (281)
T COG1091 43 LEVIRETRPDVVINAAA 59 (281)
T ss_pred HHHHHhhCCCEEEECcc
Confidence 35578889999985443
No 372
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=36.24 E-value=2.5e+02 Score=26.58 Aligned_cols=80 Identities=8% Similarity=-0.041 Sum_probs=47.3
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++..+.|+|-... .=..-++.++..+ ++.+.+++.......+...+..++.++..|. .+.+. +
T Consensus 155 ~gl~ia~vGD~~~-~v~~Sl~~~~~~~---------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~--~~~~~-----~ 217 (334)
T PRK01713 155 SEISYVYIGDARN-NMGNSLLLIGAKL---------GMDVRICAPKALLPEASLVEMCEKFAKESGA--RITVT-----D 217 (334)
T ss_pred CCcEEEEECCCcc-CHHHHHHHHHHHc---------CCEEEEECCchhcCCHHHHHHHHHHHHHcCC--eEEEE-----c
Confidence 3478999996532 1223344555444 7899998864322233334445555555442 34432 6
Q ss_pred HHHHHHhcCcEEEEcCC
Q 012436 348 DLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~ 364 (464)
++.+.++.||++....|
T Consensus 218 d~~~a~~~aDvVyt~~w 234 (334)
T PRK01713 218 DIDKAVKGVDFVHTDVW 234 (334)
T ss_pred CHHHHhCCCCEEEEcce
Confidence 78899999999877643
No 373
>PRK06487 glycerate dehydrogenase; Provisional
Probab=36.24 E-value=1.3e+02 Score=28.30 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=27.0
Q ss_pred hHHHHHHhcCcEEEE--cCCCCC---CChHHHHHHHhCCcEEEeCCCC
Q 012436 347 RDLVKLLGGAVVGIH--SMIDEH---FGISVVEYMAAGAIPIAHNSAG 389 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~--ps~~e~---~~~~~~Ea~a~G~PvI~~~~~~ 389 (464)
.++.++++.||++++ |...++ ++-..++.|--|.-+|-+.-|+
T Consensus 189 ~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~ 236 (317)
T PRK06487 189 LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGG 236 (317)
T ss_pred cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCcc
Confidence 368889999998764 444444 4444677776676555544443
No 374
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=36.08 E-value=2.6e+02 Score=26.47 Aligned_cols=79 Identities=11% Similarity=-0.014 Sum_probs=46.6
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
+..|.++|... + ++..+..+.... ++++.+++...-.......+.+++.++..|. .+.+. ++
T Consensus 154 glkv~~vGD~~---~---v~~Sl~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~~-----~d 215 (338)
T PRK02255 154 DCKVVFVGDAT---Q---VCVSLMFIATKM-----GMDFVHFGPKGYQLPEEHLAIAEENCEVSGG--SVLVT-----DD 215 (338)
T ss_pred CCEEEEECCCc---h---HHHHHHHHHHhC-----CCEEEEECCCccccCHHHHHHHHHHHHhcCC--eEEEE-----cC
Confidence 47899999642 2 333333333333 7899999864322233444555555554442 34432 56
Q ss_pred HHHHHhcCcEEEEcCCC
Q 012436 349 LVKLLGGAVVGIHSMID 365 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps~~ 365 (464)
+.+.+..||++....|.
T Consensus 216 ~~eav~~aDvvy~~~w~ 232 (338)
T PRK02255 216 VDEAVKDADFVYTDVWY 232 (338)
T ss_pred HHHHhCCCCEEEEcccH
Confidence 77889999998876544
No 375
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=36.07 E-value=2.2e+02 Score=26.18 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=15.0
Q ss_pred hHHHHHHhhhcCCcEEEecc
Q 012436 129 VYLSWEALCKFTPLYYFDTS 148 (464)
Q Consensus 129 ~~~~~~~l~~~~~Dvv~~~~ 148 (464)
...+.+.+++.+||+|+.+.
T Consensus 110 ~~~L~~iIr~~~PdvVvT~d 129 (283)
T TIGR03446 110 AEPLVRVIREFRPHVITTYD 129 (283)
T ss_pred HHHHHHHHHHcCCEEEEecC
Confidence 44566778899999998653
No 376
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=35.85 E-value=1.7e+02 Score=27.57 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=24.7
Q ss_pred CChhHHHHHHhcCcEEEE--cCCCCCCChH---HHHHHHhCC
Q 012436 344 LLYRDLVKLLGGAVVGIH--SMIDEHFGIS---VVEYMAAGA 380 (464)
Q Consensus 344 ~~~~~~~~~l~~ad~~v~--ps~~e~~~~~---~~Ea~a~G~ 380 (464)
...+++.+++++||++.+ |...|+.++- .+..|--|.
T Consensus 186 ~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~ga 227 (324)
T COG0111 186 VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGA 227 (324)
T ss_pred eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCe
Confidence 334779999999998654 6677777765 344444454
No 377
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=35.70 E-value=3.5e+02 Score=24.72 Aligned_cols=42 Identities=29% Similarity=0.325 Sum_probs=25.8
Q ss_pred HHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHc
Q 012436 372 VVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 372 ~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~ 422 (464)
.+.+.+.|.|.|++|- +..-+ .+.| +.+..-+++..+..+-.
T Consensus 141 a~~~i~~g~~fI~tNp-----D~~~p---~~~g-~~pgaGai~~~~~~~tg 182 (269)
T COG0647 141 ALLAIAAGAPFIATNP-----DLTVP---TERG-LRPGAGAIAALLEQATG 182 (269)
T ss_pred HHHHHHcCCcEEEeCC-----Ccccc---CCCC-CccCcHHHHHHHHHhhC
Confidence 4667888999999983 33333 3555 33455566666655543
No 378
>PRK06703 flavodoxin; Provisional
Probab=35.69 E-value=35 Score=27.74 Aligned_cols=33 Identities=6% Similarity=0.001 Sum_probs=24.2
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLD 69 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~ 69 (464)
||++++..+ ..|-++.++..+++.|.+.|++++
T Consensus 2 mkv~IiY~S--~tGnT~~iA~~ia~~l~~~g~~v~ 34 (151)
T PRK06703 2 AKILIAYAS--MSGNTEDIADLIKVSLDAFDHEVV 34 (151)
T ss_pred CeEEEEEEC--CCchHHHHHHHHHHHHHhcCCceE
Confidence 566666433 346899999999999999885444
No 379
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=35.68 E-value=2.5e+02 Score=24.79 Aligned_cols=47 Identities=9% Similarity=-0.049 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCC
Q 012436 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFG 369 (464)
Q Consensus 323 ~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~ 369 (464)
.+.-+.++++|....+.+-+..|-+.+..++...|.++.-+..-||+
T Consensus 100 ~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~ 146 (223)
T PRK08745 100 HRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFG 146 (223)
T ss_pred HHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCC
Confidence 56667788888888899999899999999999999765544433444
No 380
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=35.43 E-value=3.1e+02 Score=25.27 Aligned_cols=39 Identities=8% Similarity=-0.046 Sum_probs=23.2
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
..++|||+++... ...-+..+.++......++++..+..
T Consensus 86 ~~~~~ri~vl~Sg------~g~nl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 86 PAARPKVLIMVSK------FDHCLNDLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred cccCceEEEEEcC------CcccHHHHHHHHHcCCCCcEEEEEEE
Confidence 4457899997653 23445566777655433466665543
No 381
>PRK07714 hypothetical protein; Provisional
Probab=35.41 E-value=1.9e+02 Score=21.62 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
|.+.+++++++= ...++|+...... ...+.+...+...+++ +... .+.+|+-..+......+..
T Consensus 22 G~~~v~~al~~g---------~~~lViiA~D~s~---~~~~ki~~~~~~~~vp--~~~~--~sk~eLG~a~Gk~~~~~va 85 (100)
T PRK07714 22 GEELVLKEVRSG---------KAKLVLLSEDASV---NTTKKITDKCTYYNVP--MRKV--ENRQQLGHAIGKDERVVVA 85 (100)
T ss_pred cHHHHHHHHHhC---------CceEEEEeCCCCH---HHHHHHHHHHHhcCCC--EEEe--CCHHHHHHHhCCCcceEEE
Confidence 566666666542 5677777654322 4557777777776654 3333 3558888888765433332
Q ss_pred CCCCCCChHHHH
Q 012436 363 MIDEHFGISVVE 374 (464)
Q Consensus 363 s~~e~~~~~~~E 374 (464)
-..+++.-.+.+
T Consensus 86 i~d~g~a~~l~~ 97 (100)
T PRK07714 86 VLDEGFAKKLRS 97 (100)
T ss_pred EeCchhHHHHHH
Confidence 244555555544
No 382
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=35.36 E-value=1.2e+02 Score=27.06 Aligned_cols=96 Identities=11% Similarity=-0.017 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHH------hcCcE
Q 012436 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLL------GGAVV 358 (464)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l------~~ad~ 358 (464)
+.+..|++.. +.+ +.-++++-|+.... ..+..+.+++.+.++|+++.-.+....+..-..+.. ..-++
T Consensus 68 ~Rl~~A~~LY-k~g----k~~~ilvSGg~~~~-~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~ 141 (239)
T PRK10834 68 YRIQGAINAY-NSG----KVNYLLLSGDNALQ-SYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDF 141 (239)
T ss_pred HHHHHHHHHH-HhC----CCCEEEEeCCCCCC-CCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCE
Confidence 4455555544 433 34567777764322 223346788888899998876666554444444433 33345
Q ss_pred EEEcCCCCCCChHHHHHHHhCCcEEEeCC
Q 012436 359 GIHSMIDEHFGISVVEYMAAGAIPIAHNS 387 (464)
Q Consensus 359 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 387 (464)
.|.++ .-..+.++.-+-..|.-+++...
T Consensus 142 iIVTq-~fHm~RA~~ia~~~Gi~~~~~~a 169 (239)
T PRK10834 142 IIITQ-RFHCERALFIALHMGIQAQCYAV 169 (239)
T ss_pred EEECC-HHHHHHHHHHHHHcCCceEEEeC
Confidence 55554 33456667778888998877643
No 383
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=35.35 E-value=3.1e+02 Score=24.13 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhc-----
Q 012436 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGG----- 355 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~----- 355 (464)
++.+.++++..++. ...+.+........+.++..++-+.+.++|. +.|.+. |...+.++.++++.
T Consensus 107 ~~~~~~~v~~ak~~------g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~v~~lv~~~~~~~ 179 (237)
T PF00682_consen 107 LERIEEAVKYAKEL------GYEVAFGCEDASRTDPEELLELAEALAEAGA-DIIYLADTVGIMTPEDVAELVRALREAL 179 (237)
T ss_dssp HHHHHHHHHHHHHT------TSEEEEEETTTGGSSHHHHHHHHHHHHHHT--SEEEEEETTS-S-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc------CCceEeCccccccccHHHHHHHHHHHHHcCC-eEEEeeCccCCcCHHHHHHHHHHHHHhc
Confidence 45555555555554 4455554443333445666667777777764 456654 67777777766654
Q ss_pred --CcEEEEcCCCCCCChH-HHHHHHhCCcEEEeCCCCC
Q 012436 356 --AVVGIHSMIDEHFGIS-VVEYMAAGAIPIAHNSAGP 390 (464)
Q Consensus 356 --ad~~v~ps~~e~~~~~-~~Ea~a~G~PvI~~~~~~~ 390 (464)
..+.++..-.-|++++ .++|+.+|.-.|-+...|.
T Consensus 180 ~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~Gl 217 (237)
T PF00682_consen 180 PDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGL 217 (237)
T ss_dssp TTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGG
T ss_pred cCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccC
Confidence 3355666444444443 5899999999987776666
No 384
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=35.35 E-value=1.6e+02 Score=26.40 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=25.8
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhh---CCCCceEEEccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEE---SPDLDCIVYTGD 76 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~---g~~~~v~~~~~~ 76 (464)
||+++.+..... .....+..+.+.+.+. |.+++++++...
T Consensus 1 ~Ig~i~~~~~~~-~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~ 43 (272)
T cd06300 1 KIGLSNSYAGNT-WRAQMLDEFKAQAKELKKAGLISEFIVTSAD 43 (272)
T ss_pred CeEEeccccCCh-HHHHHHHHHHHHHHhhhccCCeeEEEEecCC
Confidence 688888766544 5556666666777777 744466665543
No 385
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.28 E-value=1.9e+02 Score=26.67 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=35.3
Q ss_pred HhcCcEEEEcCCCCCCChHHHHH----HHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 353 LGGAVVGIHSMIDEHFGISVVEY----MAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 353 l~~ad~~v~ps~~e~~~~~~~Ea----~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
.+.+|+++.- ..+ | +++.| ...++|++.-+. |..||+.+ +++++.+++.++++
T Consensus 62 ~~~~Dlvi~i-GGD--G-T~L~aa~~~~~~~~PilGIN~-------------G~lGFLt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 62 FKISDFLISL-GGD--G-TLISLCRKAAEYDKFVLGIHA-------------GHLGFLTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred ccCCCEEEEE-CCC--H-HHHHHHHHhcCCCCcEEEEeC-------------CCcccCCcCCHHHHHHHHHHHHc
Confidence 3468987754 222 2 33333 334788887663 45678887 89999999999886
No 386
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=35.19 E-value=3.3e+02 Score=24.77 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=32.0
Q ss_pred HHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 16 LASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
+++..++.--+ +-..+.+..|+++.+..... -....+..+.+++.+.| +.++++.
T Consensus 9 ~~~~~~~~~~~-~~~~~~~~~I~vi~~~~~~~-f~~~~~~~i~~~~~~~G--~~~~~~~ 63 (295)
T PRK10653 9 LVSAVALSATV-SANAMAKDTIALVVSTLNNP-FFVSLKDGAQKEADKLG--YNLVVLD 63 (295)
T ss_pred HHHHHHHHHhc-CCccccCCeEEEEecCCCCh-HHHHHHHHHHHHHHHcC--CeEEEec
Confidence 33333443333 33333456888887765433 35566677778888888 5655544
No 387
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=35.02 E-value=1.1e+02 Score=28.55 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.++++.-+-.++.+. +-+.+||+|+- ...+++..++..+...| +++.+.++..
T Consensus 133 tQaL~Dl~Ti~e~~g~~-~l~g~~va~vG-------d~~rv~~Sl~~~~~~~G--~~v~~~~P~~ 187 (311)
T PRK14804 133 CQSLADIMTIALDSPEI-PLNQKQLTYIG-------VHNNVVNSLIGITAALG--IHLTLVTPIA 187 (311)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCCEEEEEC-------CCCcHHHHHHHHHHHcC--CEEEEECCCC
Confidence 68999998887765321 23568999983 23588888899999998 8888888653
No 388
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=34.95 E-value=1.8e+02 Score=27.59 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+..++.+ +.-+.++|+|+-. . ..+++..++..+...| .++.+.++..
T Consensus 136 tQaLaDl~Ti~e~~g~-~~l~g~~ia~vGD-~-----~~~v~~Sl~~~~~~~g--~~v~~~~P~~ 191 (336)
T PRK03515 136 TQLLADLLTMQEHLPG-KAFNEMTLAYAGD-A-----RNNMGNSLLEAAALTG--LDLRLVAPKA 191 (336)
T ss_pred HHHHHHHHHHHHHhCC-CCcCCCEEEEeCC-C-----cCcHHHHHHHHHHHcC--CEEEEECCch
Confidence 6999999998777622 2345699999843 1 1246777788888888 8888888754
No 389
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=34.91 E-value=3.1e+02 Score=23.95 Aligned_cols=83 Identities=12% Similarity=-0.025 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC-----ChhHHHHHHhcCcEEEEcCC--------CCC--C
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL-----LYRDLVKLLGGAVVGIHSMI--------DEH--F 368 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-----~~~~~~~~l~~ad~~v~ps~--------~e~--~ 368 (464)
+.++.++...... ...+.+++.+..+++|.. .+.++-.- +.+++.+.+..||++++.-- ... .
T Consensus 29 ~~~i~~iptA~~~-~~~~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l 106 (217)
T cd03145 29 GARIVVIPAASEE-PAEVGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPL 106 (217)
T ss_pred CCcEEEEeCCCcC-hhHHHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChH
Confidence 4566666654322 235567777777888865 34443222 45678889999998776521 111 2
Q ss_pred ChHHHHHHHhCCcEEEeCCC
Q 012436 369 GISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 369 ~~~~~Ea~a~G~PvI~~~~~ 388 (464)
--.+-++...|+|++.+..|
T Consensus 107 ~~~l~~~~~~G~v~~G~SAG 126 (217)
T cd03145 107 LDALRKVYRGGVVIGGTSAG 126 (217)
T ss_pred HHHHHHHHHcCCEEEEccHH
Confidence 22356677889988876644
No 390
>PLN02928 oxidoreductase family protein
Probab=34.81 E-value=1.5e+02 Score=28.28 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=27.2
Q ss_pred ChhHHHHHHhcCcEEEE--cCCCCCCC---hHHHHHHHhCCcEEEeCCC
Q 012436 345 LYRDLVKLLGGAVVGIH--SMIDEHFG---ISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 345 ~~~~~~~~l~~ad~~v~--ps~~e~~~---~~~~Ea~a~G~PvI~~~~~ 388 (464)
+..++.+++++||+++. |...++-+ -..++.|--|.-+|-+.-|
T Consensus 216 ~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG 264 (347)
T PLN02928 216 GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARG 264 (347)
T ss_pred cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCc
Confidence 34789999999998765 33444433 3456666666544444433
No 391
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=34.77 E-value=1.6e+02 Score=26.44 Aligned_cols=39 Identities=18% Similarity=-0.019 Sum_probs=27.8
Q ss_pred hHHHHHHh--cCcEEEEcCC-CCCCChHHHHHHH--hCCcEEEe
Q 012436 347 RDLVKLLG--GAVVGIHSMI-DEHFGISVVEYMA--AGAIPIAH 385 (464)
Q Consensus 347 ~~~~~~l~--~ad~~v~ps~-~e~~~~~~~Ea~a--~G~PvI~~ 385 (464)
.++.+.+. ..|++|-.|. ...|.--++++|+ +..|+|-.
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 36777777 7888888876 5556666888887 45677753
No 392
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=34.65 E-value=2.4e+02 Score=26.40 Aligned_cols=52 Identities=10% Similarity=-0.032 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHH
Q 012436 324 SLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMA 377 (464)
Q Consensus 324 ~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a 377 (464)
.+++.+.+.+++ +........++..+.+. +.|++|..++..-++-.+++..-
T Consensus 47 ~v~~~A~~~~Ip--v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~ 100 (313)
T TIGR00460 47 PVKVLAEEKGIP--VFQPEKQRQLEELPLVRELKPDVIVVVSFGKILPKEFLDLFP 100 (313)
T ss_pred hHHHHHHHcCCC--EEecCCCCcHHHHHHHHhhCCCEEEEccchhhCCHHHHhhcc
Confidence 466667666664 33333433233333333 45666655444444444444333
No 393
>PRK08005 epimerase; Validated
Probab=34.51 E-value=2.8e+02 Score=24.20 Aligned_cols=74 Identities=7% Similarity=-0.073 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
+++..++.+... ....+.+-.... ....+.-+.+++.|....+.+-+..|-+.+..++...|.++.-
T Consensus 69 ~P~~~i~~~~~~---------gad~It~H~Ea~----~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvM 135 (210)
T PRK08005 69 SPQRWLPWLAAI---------RPGWIFIHAESV----QNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIM 135 (210)
T ss_pred CHHHHHHHHHHh---------CCCEEEEcccCc----cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEE
Confidence 566667666655 223333332211 1235667778888888888888888999999999999976555
Q ss_pred CCCCCCC
Q 012436 363 MIDEHFG 369 (464)
Q Consensus 363 s~~e~~~ 369 (464)
|..-||+
T Consensus 136 sV~PGf~ 142 (210)
T PRK08005 136 TSEPDGR 142 (210)
T ss_pred EecCCCc
Confidence 4444444
No 394
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=34.42 E-value=2.1e+02 Score=25.34 Aligned_cols=53 Identities=8% Similarity=0.030 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHH-hcCCCCcEEEccCCChhHHHHHHhcCcEEEEcC
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSI-ELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM 363 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~-~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps 363 (464)
....+++|+..+-..++. .++-+.++ +.+++ -+.|.|.. +.+ ...+|.+++||
T Consensus 41 GTDaImIGGS~gvt~~~~-~~~v~~ik~~~~lP-vilfP~~~--~~i---s~~aDavff~s 94 (240)
T COG1646 41 GTDAIMIGGSDGVTEENV-DNVVEAIKERTDLP-VILFPGSP--SGI---SPYADAVFFPS 94 (240)
T ss_pred CCCEEEECCcccccHHHH-HHHHHHHHhhcCCC-EEEecCCh--hcc---CccCCeEEEEE
Confidence 556788887554433333 34444444 66665 56666665 333 34789888886
No 395
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=34.39 E-value=3.2e+02 Score=26.42 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=49.0
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC--------CChhHHHHHHhcCcEEE--EcCCCC----CCC
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN--------LLYRDLVKLLGGAVVGI--HSMIDE----HFG 369 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--------~~~~~~~~~l~~ad~~v--~ps~~e----~~~ 369 (464)
+-++-|+|-|.-. ..+.+.++.+|.. |..... ....++.+++++||+++ .|...+ +.+
T Consensus 116 gktvGIIG~G~IG------~~vA~~l~a~G~~--V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~ 187 (378)
T PRK15438 116 DRTVGIVGVGNVG------RRLQARLEALGIK--TLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLH 187 (378)
T ss_pred CCEEEEECcCHHH------HHHHHHHHHCCCE--EEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCccccccc
Confidence 5688888887533 5677777777653 433211 12246889999999876 454443 333
Q ss_pred ---hHHHHHHHhCCcEEEeCCCCC
Q 012436 370 ---ISVVEYMAAGAIPIAHNSAGP 390 (464)
Q Consensus 370 ---~~~~Ea~a~G~PvI~~~~~~~ 390 (464)
-..++.|.-|.-+|-+.-|+.
T Consensus 188 li~~~~l~~mk~gailIN~aRG~v 211 (378)
T PRK15438 188 LADEKLIRSLKPGAILINACRGAV 211 (378)
T ss_pred ccCHHHHhcCCCCcEEEECCCchh
Confidence 346788877876665555543
No 396
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=34.15 E-value=32 Score=27.63 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=24.6
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLD 69 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~ 69 (464)
||++++..+ ..|-+++++..+++.|...|++++
T Consensus 1 M~i~IiY~S--~tGnTe~iA~~ia~~l~~~g~~v~ 33 (140)
T TIGR01754 1 MRILLAYLS--LSGNTEEVAFMIQDYLQKDGHEVD 33 (140)
T ss_pred CeEEEEEEC--CCChHHHHHHHHHHHHhhCCeeEE
Confidence 677777543 346889999999999988885433
No 397
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=34.05 E-value=2.9e+02 Score=26.31 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=52.9
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCC-CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLP-RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p-~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
++..++.+|. .. | ...++++..+ | +++++-+.+.. .+..++.++++|++ .+
T Consensus 2 ~~~rVgViG~-~~--G-~~h~~al~~~--------~~~~eLvaV~d~~-------~erA~~~A~~~gi~------~y--- 53 (343)
T TIGR01761 2 DVQSVVVCGT-RF--G-QFYLAAFAAA--------PERFELAGILAQG-------SERSRALAHRLGVP------LY--- 53 (343)
T ss_pred CCcEEEEEeH-HH--H-HHHHHHHHhC--------CCCcEEEEEEcCC-------HHHHHHHHHHhCCC------cc---
Confidence 3467888885 21 2 2345555554 3 57777666543 15667777777643 12
Q ss_pred hHHHHHHhcCcEE--EEcCC-CCCCCh-HHHHHHHhCCcEEEeC
Q 012436 347 RDLVKLLGGAVVG--IHSMI-DEHFGI-SVVEYMAAGAIPIAHN 386 (464)
Q Consensus 347 ~~~~~~l~~ad~~--v~ps~-~e~~~~-~~~Ea~a~G~PvI~~~ 386 (464)
.++.++++..|+. ..|+. ..+... ...+|+..|+.|++=.
T Consensus 54 ~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EK 97 (343)
T TIGR01761 54 CEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEH 97 (343)
T ss_pred CCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcC
Confidence 4455556666653 33432 223333 3578999999999854
No 398
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=34.04 E-value=2.7e+02 Score=26.38 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=47.7
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
+..+.|+|.+. ..=..-++.++..+ ++.+.++|...-...++..++.++.++..|. .+.. . ++
T Consensus 156 gl~va~vGD~~-~~v~~S~~~~~~~~---------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~---~--~d 218 (334)
T PRK12562 156 EMTLVYAGDAR-NNMGNSMLEAAALT---------GLDLRLVAPQACWPEASLVAECSALAQKHGG--KITL---T--ED 218 (334)
T ss_pred CcEEEEECCCC-CCHHHHHHHHHHHc---------CCEEEEECCcccCCcHHHHHHHHHHHHHcCC--eEEE---E--cC
Confidence 47899999663 22233344444443 7899999864322233445555566655442 2332 2 56
Q ss_pred HHHHHhcCcEEEEcCC
Q 012436 349 LVKLLGGAVVGIHSMI 364 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps~ 364 (464)
+.+.++.||++....|
T Consensus 219 ~~~a~~~aDvvyt~~w 234 (334)
T PRK12562 219 IAAGVKGADFIYTDVW 234 (334)
T ss_pred HHHHhCCCCEEEEcCc
Confidence 7788999999887754
No 399
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=34.03 E-value=3.3e+02 Score=25.51 Aligned_cols=41 Identities=7% Similarity=-0.051 Sum_probs=27.8
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
.++.+|+++.+..... -....+..+-+++.+.| +.+++...
T Consensus 23 ~~~~~Ig~i~~~~~~~-f~~~~~~gi~~~a~~~g--~~l~i~~~ 63 (330)
T PRK10355 23 AKEVKIGMAIDDLRLE-RWQKDRDIFVKKAESLG--AKVFVQSA 63 (330)
T ss_pred CCCceEEEEecCCCch-HHHHHHHHHHHHHHHcC--CEEEEECC
Confidence 4688999998776544 45555556667777777 66666554
No 400
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.02 E-value=1.6e+02 Score=27.47 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=36.1
Q ss_pred HhcCcEEEEcCCCCCCChHHHHHH----HhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 353 LGGAVVGIHSMIDEHFGISVVEYM----AAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 353 l~~ad~~v~ps~~e~~~~~~~Ea~----a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
-+.+|+++.- ..+ | +++.|. ..++|++.-+. |.-||+.+ +++++.+++.++++
T Consensus 66 ~~~~Dlvi~i-GGD--G-TlL~aar~~~~~~iPilGIN~-------------G~lGFLt~~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 66 DSSMKFAIVL-GGD--G-TVLSAARQLAPCGIPLLTINT-------------GHLGFLTEAYLNQLDEAIDQVLA 123 (305)
T ss_pred ccCcCEEEEE-eCc--H-HHHHHHHHhcCCCCcEEEEeC-------------CCCcccccCCHHHHHHHHHHHHc
Confidence 3468987755 222 2 444433 35789888664 35678877 89999999999987
No 401
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=33.84 E-value=4.9e+02 Score=25.97 Aligned_cols=99 Identities=11% Similarity=0.004 Sum_probs=59.9
Q ss_pred CChHHHHHHHHHH-HHHhc-C--CCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCc
Q 012436 282 KAHPLQLEAFSVA-LRKLD-A--DLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAV 357 (464)
Q Consensus 282 K~~~~ll~a~~~l-~~~~~-~--~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad 357 (464)
.|.+...+++.+. ..... . ..++-.+.|+|.-.... -..+++++.+++|+..+..+.|.-+.+++.. +..|.
T Consensus 181 ~G~~~a~~ai~~~l~~~~~~~~~~~~~~~VNiiG~~~~~g---d~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~-~~~A~ 256 (466)
T TIGR01282 181 LGHHIANDAVRDWVLGKGDKEKFEPTPYDVAIIGDYNIGG---DAWESRILLEEIGLRVVAQWSGDGTLNEMEN-APKAK 256 (466)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCeEEEEecCCCcc---cHHHHHHHHHHcCCeEEEEECCCCCHHHHHh-cccCC
Confidence 3667666666542 21110 0 00245788888643221 2367999999999987777888777777765 56666
Q ss_pred EEEEcCCCCCCChHHHHHHH--hCCcEEEeC
Q 012436 358 VGIHSMIDEHFGISVVEYMA--AGAIPIAHN 386 (464)
Q Consensus 358 ~~v~ps~~e~~~~~~~Ea~a--~G~PvI~~~ 386 (464)
+-+..+...+ ..+.|.|. +|+|.+..+
T Consensus 257 lniv~~~~~~--~~~A~~Le~~fGiP~~~~~ 285 (466)
T TIGR01282 257 LNLIHCYRSM--NYISRHMEEKYGIPWMEYN 285 (466)
T ss_pred EEEEEChHHH--HHHHHHHHHHhCCceEeCC
Confidence 6555432221 24556663 699988754
No 402
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=33.73 E-value=2e+02 Score=24.95 Aligned_cols=73 Identities=18% Similarity=0.058 Sum_probs=41.8
Q ss_pred cCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHh-cCCCCcEEEccCCChhHHHHHHhcC
Q 012436 278 FRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIE-LKVDGNVEFYKNLLYRDLVKLLGGA 356 (464)
Q Consensus 278 ~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~~~~~~~l~~a 356 (464)
++|.|- +.+.+.++.+.+. ....+++|+...- ..+...++-+.+++ .+++ -+.|.|.. + .+-..+
T Consensus 5 iDP~k~-e~~~~ia~~v~~~------gtDaI~VGGS~gv-t~~~~~~~v~~ik~~~~lP-vilfp~~~--~---~i~~~a 70 (205)
T TIGR01769 5 IDPEKS-DEIEKIAKNAKDA------GTDAIMVGGSLGI-VESNLDQTVKKIKKITNLP-VILFPGNV--N---GLSRYA 70 (205)
T ss_pred cCCCcH-HHHHHHHHHHHhc------CCCEEEEcCcCCC-CHHHHHHHHHHHHhhcCCC-EEEECCCc--c---ccCcCC
Confidence 566666 5555555555543 4567788754322 22333444455555 4454 55666655 2 334669
Q ss_pred cEEEEcCC
Q 012436 357 VVGIHSMI 364 (464)
Q Consensus 357 d~~v~ps~ 364 (464)
|.+++||.
T Consensus 71 D~~~~~sl 78 (205)
T TIGR01769 71 DAVFFMSL 78 (205)
T ss_pred CEEEEEEe
Confidence 99999983
No 403
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=33.72 E-value=39 Score=31.49 Aligned_cols=78 Identities=9% Similarity=-0.062 Sum_probs=42.0
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEE
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPI 383 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI 383 (464)
+.--+++|.-.........+.+++++++.|....+...|.++.+.+..+ ...|++|..+..+ +++.+.--.-+|||
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf-~eid~fV~~aCPr---~~idd~~~f~kPvl 285 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANF-PEIDAFVQIACPR---LSIDDSKDFYKPVL 285 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS----SEEEE-S-TH---HHHT--S--SS-EE
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcC-cccCEEEEecCCC---cccCchhhcCCccc
Confidence 4455667754444455667888888888887767777899888877666 5899999875432 34555666677776
Q ss_pred Ee
Q 012436 384 AH 385 (464)
Q Consensus 384 ~~ 385 (464)
..
T Consensus 286 tP 287 (307)
T PF01866_consen 286 TP 287 (307)
T ss_dssp -H
T ss_pred CH
Confidence 53
No 404
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=33.31 E-value=3.3e+02 Score=24.68 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=21.9
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhh-CCCCceEEEcccCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEE-SPDLDCIVYTGDHD 78 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~-g~~~~v~~~~~~~~ 78 (464)
|||++.....-..-| +..|+++|.+. +...+|++..+..+
T Consensus 1 M~ILlTNDDGI~a~G----l~aL~~~l~~~~~~~~~V~VVAP~~e 41 (261)
T PRK13931 1 MRILITNDDGINAPG----LEVLEQIATELAGPDGEVWTVAPAFE 41 (261)
T ss_pred CeEEEEcCCCCCCHh----HHHHHHHHHHhccCCCeEEEEeCCCC
Confidence 788887765432212 34445556553 10136777777653
No 405
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.21 E-value=2.5e+02 Score=25.96 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=35.5
Q ss_pred hcCcEEEEcCCCCCCChHHHHHH----HhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 354 GGAVVGIHSMIDEHFGISVVEYM----AAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 354 ~~ad~~v~ps~~e~~~~~~~Ea~----a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
+.+|+++.- .|=| +++.|. ..++|++.-+.| ..||+.+ +++++.+++.++++
T Consensus 63 ~~~dlvi~l---GGDG-T~L~aa~~~~~~~~PilGIN~G-------------~lGFLt~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 63 GSADMVISI---GGDG-TFLRTATYVGNSNIPILGINTG-------------RLGFLATVSKEEIEETIDELLN 119 (292)
T ss_pred cCCCEEEEE---CCcH-HHHHHHHHhcCCCCCEEEEecC-------------CCCcccccCHHHHHHHHHHHHc
Confidence 468987754 2222 333333 247898886643 5678887 89999999999987
No 406
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=33.18 E-value=2.5e+02 Score=26.48 Aligned_cols=80 Identities=15% Similarity=0.070 Sum_probs=47.3
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++.++.|+|.+.. + ++..+..+.... ++.+.+++.......+...+..++.++..|. .+.+ . +
T Consensus 154 ~g~~va~vGd~~~--~---v~~Sl~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~---~--~ 216 (331)
T PRK02102 154 KGLKLAYVGDGRN--N---MANSLMVGGAKL-----GMDVRICAPKELWPEEELVALAREIAKETGA--KITI---T--E 216 (331)
T ss_pred CCCEEEEECCCcc--c---HHHHHHHHHHHc-----CCEEEEECCcccccCHHHHHHHHHHHHHcCC--eEEE---E--c
Confidence 4478999996632 2 333333333333 7899999964333233444555555555542 3433 2 5
Q ss_pred HHHHHHhcCcEEEEcCC
Q 012436 348 DLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~ 364 (464)
++.+.+..||++....|
T Consensus 217 d~~ea~~~aDvvyt~~w 233 (331)
T PRK02102 217 DPEEAVKGADVIYTDVW 233 (331)
T ss_pred CHHHHhCCCCEEEEcCc
Confidence 67788999999877643
No 407
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=33.10 E-value=1.9e+02 Score=27.42 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=32.9
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
++||++++...... |+..++..+.+.+...| .+|+-+-..
T Consensus 2 ~kkIaIlTSGGdaP-GmNa~Iravvr~a~~~g--~eV~Gi~~G 41 (347)
T COG0205 2 MKKIAILTSGGDAP-GMNAVIRAVVRTAIKEG--LEVFGIYNG 41 (347)
T ss_pred CceEEEEccCCCCc-cHHHHHHHHHHHHHHcC--CEEEEEecc
Confidence 58999998877777 89999999999999987 777766544
No 408
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=32.88 E-value=2e+02 Score=25.64 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=19.8
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
.||++++||.. .+...+.+.|.+.| ++|+.+.
T Consensus 121 ~RIalvTPY~~------~v~~~~~~~l~~~G--~eV~~~~ 152 (239)
T TIGR02990 121 RRISLLTPYTP------ETSRPMAQYFAVRG--FEIVNFT 152 (239)
T ss_pred CEEEEECCCcH------HHHHHHHHHHHhCC--cEEeeee
Confidence 57777777753 33445566777777 5555544
No 409
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=32.85 E-value=3.2e+02 Score=25.24 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=24.2
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
.++|||+++... ...-+..+.++..+...+.++.++.++
T Consensus 91 ~~~~kiavl~Sg------~g~nl~al~~~~~~~~l~~~i~~visn 129 (289)
T PRK13010 91 GQRPKVVIMVSK------FDHCLNDLLYRWRMGELDMDIVGIISN 129 (289)
T ss_pred CCCeEEEEEEeC------CCccHHHHHHHHHCCCCCcEEEEEEEC
Confidence 457899987553 333455667777665545676665544
No 410
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=32.74 E-value=2e+02 Score=27.11 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.++++.-+-.++ +.-+.+||+|+-.. ..+++..++..+...| .+|.+.++..
T Consensus 137 tQaLaDl~Ti~e~~---g~l~g~~va~vGd~------~~~v~~Sl~~~~~~~g--~~v~~~~P~~ 190 (331)
T PRK02102 137 TQMLADFMTMKEHF---GPLKGLKLAYVGDG------RNNMANSLMVGGAKLG--MDVRICAPKE 190 (331)
T ss_pred HHHHHHHHHHHHHh---CCCCCCEEEEECCC------cccHHHHHHHHHHHcC--CEEEEECCcc
Confidence 69999998887665 34567899988321 1347778888888888 7888887654
No 411
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=32.66 E-value=1.7e+02 Score=23.49 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC-----cEEEEcCCCCCCChHHHHHHHh-CCcEEE---eCCCCCccc
Q 012436 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA-----VVGIHSMIDEHFGISVVEYMAA-GAIPIA---HNSAGPKMD 393 (464)
Q Consensus 323 ~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a-----d~~v~ps~~e~~~~~~~Ea~a~-G~PvI~---~~~~~~~~~ 393 (464)
+.+++.+.++|+. +.+.-.-...++.+.+.+| ++.+.|.-+...+..+.+|++. .+|+|= |+.-.- ++
T Consensus 32 ~~~~~~a~~~g~~--v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~vEVHlSNihaR-E~ 108 (146)
T COG0757 32 ADLEEEAAKLGVE--VEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVVEVHLSNIHAR-EE 108 (146)
T ss_pred HHHHHHHHHcCce--EEEEecCchHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEEEEEecCchhc-cc
Confidence 4445555555442 4444433344555554433 2788898888889999999755 789985 343322 33
Q ss_pred eecccCC--ccceeecC-CHHHHHHHHHHHHc
Q 012436 394 IVLEEDG--QQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 394 ~v~~~~~--~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
+-.+... -..|.++. -++...-+++.+.+
T Consensus 109 FRhhS~~s~~a~GvI~GlG~~GY~lAl~~l~~ 140 (146)
T COG0757 109 FRHHSYTSPVAKGVICGLGAQGYLLALRALVN 140 (146)
T ss_pred ccccccccchhceeEecCcHHHHHHHHHHHHH
Confidence 3222000 23456665 66666666665553
No 412
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=32.61 E-value=3.4e+02 Score=23.70 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=25.2
Q ss_pred HHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHc
Q 012436 372 VVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 372 ~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~ 422 (464)
+++-...-.|+|..+-++........-..-+.|+..++--+||.+++--++
T Consensus 178 ~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSME 228 (259)
T KOG2884|consen 178 LLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSME 228 (259)
T ss_pred cHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhHH
Confidence 455555667888876554422221110001123333344578888875444
No 413
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=32.61 E-value=4.9e+02 Score=25.56 Aligned_cols=102 Identities=11% Similarity=0.003 Sum_probs=61.4
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc------------------
Q 012436 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY------------------ 341 (464)
Q Consensus 280 ~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~------------------ 341 (464)
...|.+..++++-...........+-.+.++|...... ...++++++.+++|+..+..+-
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~--~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~ 208 (428)
T cd01965 131 HETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTP--GDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTK 208 (428)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCc--cCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCC
Confidence 34678877777754322211001245678887654221 1248899999999998766652
Q ss_pred cCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHH--hCCcEEEeC
Q 012436 342 KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMA--AGAIPIAHN 386 (464)
Q Consensus 342 g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a--~G~PvI~~~ 386 (464)
|..+.+|+.+ +.+|.+.|..+. ..+..+.|+|. +|+|-+...
T Consensus 209 gg~~~e~i~~-~~~A~lniv~~~--~~~~~~a~~L~e~~GiP~~~~~ 252 (428)
T cd01965 209 GGTTLEEIRD-AGNAKATIALGE--YSGRKAAKALEEKFGVPYILFP 252 (428)
T ss_pred CCCcHHHHHH-hccCcEEEEECh--hhhHHHHHHHHHHHCCCeeecC
Confidence 4455567654 555665554422 34566667665 899988765
No 414
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.59 E-value=2.3e+02 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=19.7
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
+|||.|+ |...+.....++|.+.| ++|+.+.
T Consensus 1 ~mkivF~--------GTp~fa~~~L~~L~~~~--~eivaV~ 31 (307)
T COG0223 1 MMRIVFF--------GTPEFAVPSLEALIEAG--HEIVAVV 31 (307)
T ss_pred CcEEEEE--------cCchhhHHHHHHHHhCC--CceEEEE
Confidence 4888886 44455556667888887 4544433
No 415
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=32.49 E-value=2.1e+02 Score=28.09 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhcccccc-cccceEEEecCCCCCCCCcchhhHHHHHHhhhh-CCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARR-NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEE-SPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~-g~~~~v~~~~~~~ 77 (464)
+|.++++.-+..++.+.++ -+.+||+|+-.. ...+++..++..+... | .+|.+.++..
T Consensus 219 tQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~-----~~~rv~~Sl~~~la~~~G--~~v~l~~P~~ 278 (429)
T PRK11891 219 SQALLDLYTIQREFSRLGKIVDGAHIALVGDL-----KYGRTVHSLVKLLALYRG--LKFTLVSPPT 278 (429)
T ss_pred HHHHHHHHHHHHHhCccCCCcCCCEEEEECcC-----CCChHHHHHHHHHHHhcC--CEEEEECCCc
Confidence 6999999998877744332 467899998532 3467888888888876 8 7888877654
No 416
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=32.35 E-value=1e+02 Score=27.72 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=0.0
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
.++|+++ |+..-...+++.|.+.|..+.+.+.|.... ............++-
T Consensus 2 ~~~Ilvl--------gGT~egr~la~~L~~~g~~v~~Svat~~g~-~~~~~~~v~~G~l~~------------------- 53 (248)
T PRK08057 2 MPRILLL--------GGTSEARALARALAAAGVDIVLSLAGRTGG-PADLPGPVRVGGFGG------------------- 53 (248)
T ss_pred CceEEEE--------echHHHHHHHHHHHhCCCeEEEEEccCCCC-cccCCceEEECCCCC-------------------
Q ss_pred ccCcceehhhhchhhhHHHHHHhhhcCCcEEEe-cccccccch-----hhhccCceEEEE
Q 012436 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFD-TSGYAFTYP-----LARIFGCRVICY 167 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~-~~~~~~~~~-----~~~~~~~p~v~~ 167 (464)
...+...+++.++++|++ +++++..+. .++..++|++-+
T Consensus 54 ---------------~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 54 ---------------AEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred ---------------HHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
No 417
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.34 E-value=4.2e+02 Score=24.66 Aligned_cols=127 Identities=9% Similarity=-0.013 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcE-EEccCCChhHHHHHHhcC--c----
Q 012436 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRDLVKLLGGA--V---- 357 (464)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v-~~~g~~~~~~~~~~l~~a--d---- 357 (464)
+.+-+.++.++.++. .|.+..+.+|+.+ ....|.+.-.+.+++.|+.... ++....+++++.+.+... |
T Consensus 18 ~~lk~~i~~l~~~g~--~P~LaiI~vg~d~--as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~ 93 (301)
T PRK14194 18 AQVREDVRTLKAAGI--EPALAVILVGNDP--ASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVN 93 (301)
T ss_pred HHHHHHHHHHHhCCC--CCeEEEEEeCCCh--hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCC
Confidence 344444455544322 2667777777654 4557888888899999987544 445566888888888654 2
Q ss_pred -EEEEcCCCCCC-ChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHH
Q 012436 358 -VGIHSMIDEHF-GISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKI 420 (464)
Q Consensus 358 -~~v~ps~~e~~-~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l 420 (464)
+++.-...... ...+++++.--+ |+.|..+.-......+..+++..++....+.++..
T Consensus 94 GIlvqlPLP~~i~~~~i~~~I~p~K-----DVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~ 153 (301)
T PRK14194 94 GILLQLPLPAHIDEARVLQAINPLK-----DVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDT 153 (301)
T ss_pred eEEEeCCCCCCCCHHHHHhccCchh-----ccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHh
Confidence 44443233322 234677766655 44444221110000023444444777766666543
No 418
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=32.22 E-value=3.1e+02 Score=25.00 Aligned_cols=39 Identities=13% Similarity=-0.037 Sum_probs=23.2
Q ss_pred HHHHHHhhhcCCcEEE--ecccccccch-hhhccCceEEEEe
Q 012436 130 YLSWEALCKFTPLYYF--DTSGYAFTYP-LARIFGCRVICYT 168 (464)
Q Consensus 130 ~~~~~~l~~~~~Dvv~--~~~~~~~~~~-~~~~~~~p~v~~~ 168 (464)
+.+...+.+..+++++ |.+.....+. +.+...+|+|-.+
T Consensus 57 ~~i~~~l~~~~ik~lVIACNTASa~al~~LR~~~~iPVvGvi 98 (269)
T COG0796 57 LEIVDFLLERGIKALVIACNTASAVALEDLREKFDIPVVGVI 98 (269)
T ss_pred HHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCEEEec
Confidence 3444556666699665 3333333333 5557899999877
No 419
>TIGR03586 PseI pseudaminic acid synthase.
Probab=31.91 E-value=2.9e+02 Score=26.05 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc-CcEEEEcCCCCCCChHHHHHHH-hCCcEEEeCCC
Q 012436 322 LQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG-AVVGIHSMIDEHFGISVVEYMA-AGAIPIAHNSA 388 (464)
Q Consensus 322 ~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~-ad~~v~ps~~e~~~~~~~Ea~a-~G~PvI~~~~~ 388 (464)
..+|.+.++++|+. .+.-..+.+.+.-+..- .+++=.+|. +-.-..++|+++ .|+|||.+.-.
T Consensus 79 ~~~L~~~~~~~Gi~---~~stpfd~~svd~l~~~~v~~~KI~S~-~~~n~~LL~~va~~gkPvilstG~ 143 (327)
T TIGR03586 79 HKELFERAKELGLT---IFSSPFDETAVDFLESLDVPAYKIASF-EITDLPLIRYVAKTGKPIIMSTGI 143 (327)
T ss_pred HHHHHHHHHHhCCc---EEEccCCHHHHHHHHHcCCCEEEECCc-cccCHHHHHHHHhcCCcEEEECCC
Confidence 45677777777654 22222233444332222 455555542 333455665554 47777776543
No 420
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=31.75 E-value=3.3e+02 Score=23.37 Aligned_cols=47 Identities=6% Similarity=0.039 Sum_probs=28.6
Q ss_pred hHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHH
Q 012436 370 ISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVK 419 (464)
Q Consensus 370 ~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~ 419 (464)
.=+.-|.++|.++|.-..+....+-... ....+.+++.+++.+.+.+
T Consensus 166 ~Di~aa~~aG~~~i~v~~g~~~~~~l~~---~~~~~~i~~~~~l~~~i~~ 212 (214)
T PRK13288 166 HDILAGKNAGTKTAGVAWTIKGREYLEQ---YKPDFMLDKMSDLLAIVGD 212 (214)
T ss_pred HHHHHHHHCCCeEEEEcCCCCCHHHHhh---cCcCEEECCHHHHHHHHhh
Confidence 3466778999999976655321221222 2344677888888776643
No 421
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=31.74 E-value=3.4e+02 Score=23.47 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccccc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (464)
||+|+ -++.- |...++-.+..+-+.+ .+++|.++.+...-++........
T Consensus 4 kig~i--k~Gni-Gts~v~dlllDErAdR-edi~vrVvgsgaKM~Pe~veaav~-------------------------- 53 (277)
T COG1927 4 KIGFI--KCGNI-GTSPVVDLLLDERADR-EDIEVRVVGSGAKMDPECVEAAVT-------------------------- 53 (277)
T ss_pred EEEEE--Eeccc-chHHHHHHHHHhhccc-CCceEEEeccccccChHHHHHHHH--------------------------
Q ss_pred CcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch------hhhccCceEEEEeeCC
Q 012436 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP------LARIFGCRVICYTHYP 171 (464)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~------~~~~~~~p~v~~~h~p 171 (464)
..+++++||+|+..+..+..-+ +....++|.++.-..|
T Consensus 54 ------------------~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 54 ------------------EMLEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred ------------------HHHHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc
No 422
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=31.64 E-value=1.7e+02 Score=26.38 Aligned_cols=86 Identities=7% Similarity=0.061 Sum_probs=55.0
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC--ChhH
Q 012436 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL--LYRD 348 (464)
Q Consensus 271 ~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~ 348 (464)
+|+|+|-+...-|...+.+.+++++++. +..++|+............+...+....+|.. +.-.|.- ++.+
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~-----~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D--~iTlGNH~fD~ge 73 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEY-----KIDFVIANGENAAGGKGITPKIAKELLSAGVD--VITMGNHTWDKKE 73 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHC-----CCCEEEECCccccCCCCCCHHHHHHHHhcCCC--EEEecccccCcch
Confidence 3899999999999999999999999886 44566663311000000114445555555543 4444543 4557
Q ss_pred HHHHHhcCcEEEEcC
Q 012436 349 LVKLLGGAVVGIHSM 363 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps 363 (464)
+.+++...+..+.|.
T Consensus 74 l~~~l~~~~~~l~~a 88 (255)
T cd07382 74 ILDFIDEEPRLLRPA 88 (255)
T ss_pred HHHHHhcCcCceEee
Confidence 888898887666664
No 423
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=31.62 E-value=2.1e+02 Score=26.40 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=35.3
Q ss_pred hcCcEEEEcCCCCCCChHHHHHH----HhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 354 GGAVVGIHSMIDEHFGISVVEYM----AAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 354 ~~ad~~v~ps~~e~~~~~~~Ea~----a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
..+|+++.- |.--+++++. ..++|++.-+. |..||+.+ +++++.++|.++++
T Consensus 62 ~~~d~vi~~----GGDGt~l~~~~~~~~~~~pilGIn~-------------G~lGFL~~~~~~~~~~~l~~~~~ 118 (291)
T PRK02155 62 ARADLAVVL----GGDGTMLGIGRQLAPYGVPLIGINH-------------GRLGFITDIPLDDMQETLPPMLA 118 (291)
T ss_pred cCCCEEEEE----CCcHHHHHHHHHhcCCCCCEEEEcC-------------CCccccccCCHHHHHHHHHHHHc
Confidence 357887755 2222444443 35778887553 45688888 89999999999886
No 424
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=31.55 E-value=3.8e+02 Score=24.15 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=56.4
Q ss_pred HHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHH
Q 012436 215 YGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVA 294 (464)
Q Consensus 215 ~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l 294 (464)
.+.+++.||.|+..+-.+.-..+..++.+.+. --+|+|.-. ..-.........|.+.|. -.+.+-+|...+
T Consensus 58 ~~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~--rv~G~Dl~~--~Ll~~a~~~~~~vfllGg-----kp~V~~~a~~~l 128 (253)
T COG1922 58 FREILNQADLILPDGIGVVRAARRLLGQPLPE--RVAGTDLVE--ALLKRAAEEGKRVFLLGG-----KPGVAEQAAAKL 128 (253)
T ss_pred HHHHHhhcCEEccCchhHHHHHHHHhCccCcc--cCChHHHHH--HHHHHhCccCceEEEecC-----CHHHHHHHHHHH
Confidence 35566889999998888888887777653221 224444321 100011122355666663 234445555666
Q ss_pred HHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc
Q 012436 295 LRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (464)
Q Consensus 295 ~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 342 (464)
.++. |...++-.-+|.....++ +.+.+.+.+.+ +.+.+.|
T Consensus 129 ~~~~----p~l~ivg~h~GYf~~~e~--~~i~~~I~~s~--pdil~Vg 168 (253)
T COG1922 129 RAKY----PGLKIVGSHDGYFDPEEE--EAIVERIAASG--PDILLVG 168 (253)
T ss_pred HHHC----CCceEEEecCCCCChhhH--HHHHHHHHhcC--CCEEEEe
Confidence 6665 444444444444332222 34444444443 3455554
No 425
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.55 E-value=2.7e+02 Score=22.27 Aligned_cols=102 Identities=10% Similarity=-0.071 Sum_probs=53.4
Q ss_pred CeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHH
Q 012436 245 RIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQS 324 (464)
Q Consensus 245 ~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~ 324 (464)
-..+++-|.+.+.-.-..... ...+.++.++.+.. .....+-+.+..+++... +++.+.+-|..... +...++
T Consensus 31 G~eVi~LG~~vp~e~i~~~a~-~~~~d~V~lS~~~~-~~~~~~~~~~~~L~~~~~---~~~~i~vGG~~~~~--~~~~~~ 103 (137)
T PRK02261 31 GFEVINLGVMTSQEEFIDAAI-ETDADAILVSSLYG-HGEIDCRGLREKCIEAGL---GDILLYVGGNLVVG--KHDFEE 103 (137)
T ss_pred CCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCccc-cCHHHHHHHHHHHHhcCC---CCCeEEEECCCCCC--ccChHH
Confidence 345677776654222111111 22244555554433 344455555666665532 36766665554211 112255
Q ss_pred HHHHHHhcCCCCcEEEccCCChhHHHHHHhc
Q 012436 325 LKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (464)
Q Consensus 325 l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ 355 (464)
..+..+++|. ...|.+..+.+++..++..
T Consensus 104 ~~~~l~~~G~--~~vf~~~~~~~~i~~~l~~ 132 (137)
T PRK02261 104 VEKKFKEMGF--DRVFPPGTDPEEAIDDLKK 132 (137)
T ss_pred HHHHHHHcCC--CEEECcCCCHHHHHHHHHH
Confidence 6666777775 3567777788888887754
No 426
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=31.50 E-value=1.2e+02 Score=18.88 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=24.2
Q ss_pred CcchHHHHHHHHHHHHHHHH---------hhhcccccccccceEE
Q 012436 3 PYGILIWAVITAVLASILIL---------ASHVHNARRNRTTSVA 38 (464)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~mkI~ 38 (464)
-||.+++.-+.-++.+.++. .-+-+||.+..++|+.
T Consensus 4 ky~wlvvfav~~flfd~limQwiEl~tte~dkCRnMdSVnPLkLv 48 (53)
T PF10831_consen 4 KYWWLVVFAVFVFLFDTLIMQWIELITTESDKCRNMDSVNPLKLV 48 (53)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCcCCCCCceee
Confidence 47777765555555555554 3344899999998875
No 427
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=31.39 E-value=60 Score=25.63 Aligned_cols=39 Identities=8% Similarity=0.175 Sum_probs=27.1
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCC-ceEEEc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDL-DCIVYT 74 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~-~v~~~~ 74 (464)
|++++....+.++-..+...++++++.+.||++ .|..+.
T Consensus 1 ~~~iv~~~~P~~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 40 (127)
T TIGR03012 1 KYTLLVTGPPYGTQAASSAYQFAQALLAKGHEIVRVFFYQ 40 (127)
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCcEEEEEEeh
Confidence 456666555555456778889999999999773 544443
No 428
>PLN02670 transferase, transferring glycosyl groups
Probab=31.27 E-value=4e+02 Score=26.66 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=61.7
Q ss_pred cccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccc
Q 012436 30 RRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRK 109 (464)
Q Consensus 30 ~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (464)
+...+.+|+++ |++. -|.-.-+.+|++.|..+| +.|+++++... .... ..... .....+++..++...
T Consensus 2 ~~~~~~HVvl~-P~pa--qGHi~P~l~LAk~La~~G--~~vT~v~t~~n--~~~~-~~~~~----~~~~~i~~~~lp~p~ 69 (472)
T PLN02670 2 KREEVLHVAMF-PWLA--MGHLIPFLRLSKLLAQKG--HKISFISTPRN--LHRL-PKIPS----QLSSSITLVSFPLPS 69 (472)
T ss_pred CCCCCcEEEEe-CChh--hhHHHHHHHHHHHHHhCC--CEEEEEeCCch--HHhh-hhccc----cCCCCeeEEECCCCc
Confidence 34445576665 3332 267788889999999988 77777665431 1111 11000 011123444443211
Q ss_pred c--ccc-----ccCcce--ehhhhchhhh-HHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEe
Q 012436 110 W--IEE-----STYPRF--TMIGQSFGSV-YLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYT 168 (464)
Q Consensus 110 ~--~~~-----~~~~~~--~~~~~~~~~~-~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~ 168 (464)
. .+. ...+.. ..+....... ....+++++..++.|+.-....+...+|+..|+|.+.+.
T Consensus 70 ~dglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~ 138 (472)
T PLN02670 70 VPGLPSSAESSTDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFS 138 (472)
T ss_pred cCCCCCCcccccccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEe
Confidence 0 010 001000 0111111111 122333455578877755554555569999999998764
No 429
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=31.23 E-value=2.1e+02 Score=28.61 Aligned_cols=160 Identities=13% Similarity=0.001 Sum_probs=84.9
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCC-CCCeE-EecCCC------CCCCCccCCCCCCCCCcEEEEEecc--CCCCChHHHH
Q 012436 219 GSCADLAMVNSSWTQSHIEKLWGI-PDRIK-RVYPPC------DTSGLQVLPLERSTEYPAIISVAQF--RPEKAHPLQL 288 (464)
Q Consensus 219 ~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~-~i~~~~------d~~~~~~~~~~~~~~~~~i~~~G~~--~~~K~~~~ll 288 (464)
+.-.|.|+-..+...+.+.+.... ..+.. ++..++ |.+.....-.....-+.+.+....+ ....|.+...
T Consensus 94 l~E~dvVfGg~~kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~~pvi~v~t~Gf~g~~~~G~~~a~ 173 (475)
T PRK14478 94 LSETDVVFGGEKKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAAEKFGIPVIPVNSPGFVGNKNLGNKLAG 173 (475)
T ss_pred CCcCceeeCCHHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHHHhhCCCEEEEECCCcccchhhhHHHHH
Confidence 355677777666666666555432 33433 333322 2221111000011111222222222 2456888777
Q ss_pred HHHHH-HHHH-hcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCC
Q 012436 289 EAFSV-ALRK-LDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDE 366 (464)
Q Consensus 289 ~a~~~-l~~~-~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e 366 (464)
+++-. +... ......+-.+.|+|...... -.++++++.+++|+..+..+.|..+.+++.. +..|.+-|..+.
T Consensus 174 ~al~~~l~~~~~~~~~~~~~VNiiG~~~~~g---d~~elk~lL~~~Gl~v~~~~~~~~s~eei~~-~~~A~lniv~~~-- 247 (475)
T PRK14478 174 EALLDHVIGTVEPEDTTPYDINILGEYNLAG---ELWQVKPLLDRLGIRVVACITGDARYDDVAS-AHRARANMMVCS-- 247 (475)
T ss_pred HHHHHHHhccCCccCCCCCeEEEEeCCCCCC---CHHHHHHHHHHcCCeEEEEcCCCCCHHHHHh-cccCcEEEEEcH--
Confidence 76654 3311 10001245788888643221 2368999999999987767888777788876 777777554421
Q ss_pred CCChHHHHHHH--hCCcEEE
Q 012436 367 HFGISVVEYMA--AGAIPIA 384 (464)
Q Consensus 367 ~~~~~~~Ea~a--~G~PvI~ 384 (464)
..+....|+|. +|+|.+.
T Consensus 248 ~~~~~~A~~L~erfGiP~~~ 267 (475)
T PRK14478 248 GAMINLARKMEERYGIPFFE 267 (475)
T ss_pred HHHHHHHHHHHHHhCCCEEe
Confidence 22334555553 5999875
No 430
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=31.11 E-value=3.2e+02 Score=24.38 Aligned_cols=69 Identities=9% Similarity=-0.089 Sum_probs=44.7
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh-cCcE
Q 012436 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG-GAVV 358 (464)
Q Consensus 280 ~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~-~ad~ 358 (464)
...|++.+++.+... .+.-+++-+-+. +..+.+.+.++++|+..-+.+.+..+.+.+..+.. ..|+
T Consensus 89 ~~~G~~~fi~~~~~a---------G~~giiipDl~~----ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~ 155 (242)
T cd04724 89 LQYGLERFLRDAKEA---------GVDGLIIPDLPP----EEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGF 155 (242)
T ss_pred HHhCHHHHHHHHHHC---------CCcEEEECCCCH----HHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCC
Confidence 355778888777665 555566654432 24567888889998864444555567777888887 5665
Q ss_pred EEE
Q 012436 359 GIH 361 (464)
Q Consensus 359 ~v~ 361 (464)
...
T Consensus 156 vy~ 158 (242)
T cd04724 156 IYY 158 (242)
T ss_pred EEE
Confidence 433
No 431
>PLN02527 aspartate carbamoyltransferase
Probab=31.11 E-value=2.5e+02 Score=26.22 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhh-CCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEE-SPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~-g~~~~v~~~~~~~ 77 (464)
+|.++++..+..++ +.-+..||+|+-... -.+++..++..+... | .++.+.++..
T Consensus 133 tQ~LaDl~Ti~e~~---g~l~g~kva~vGD~~-----~~rv~~Sl~~~~~~~~g--~~v~~~~P~~ 188 (306)
T PLN02527 133 TQALLDVYTIQREI---GRLDGIKVGLVGDLA-----NGRTVRSLAYLLAKYED--VKIYFVAPDV 188 (306)
T ss_pred HHHHHHHHHHHHHh---CCcCCCEEEEECCCC-----CChhHHHHHHHHHhcCC--CEEEEECCCc
Confidence 68999998887655 345668999985432 226788888888886 7 7888877754
No 432
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=31.05 E-value=1.2e+02 Score=27.32 Aligned_cols=42 Identities=10% Similarity=0.245 Sum_probs=28.1
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+..+|++. .++|-|=...+..|++.+.+.|+.|-|+.+.++.
T Consensus 28 ~a~~iGiT---G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS 69 (266)
T PF03308_consen 28 RAHVIGIT---GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS 69 (266)
T ss_dssp -SEEEEEE---E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG
T ss_pred CceEEEee---CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC
Confidence 45688884 3344567778899999999999777777777654
No 433
>PLN00016 RNA-binding protein; Provisional
Probab=30.93 E-value=62 Score=31.13 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=31.0
Q ss_pred cccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 28 NARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 28 ~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
+.....++||+++..+. ||....=..+++.|.+.| ++|++++..
T Consensus 46 ~~~~~~~~~VLVt~~~~---GatG~iG~~lv~~L~~~G--~~V~~l~R~ 89 (378)
T PLN00016 46 AAAAVEKKKVLIVNTNS---GGHAFIGFYLAKELVKAG--HEVTLFTRG 89 (378)
T ss_pred hhcccccceEEEEeccC---CCceeEhHHHHHHHHHCC--CEEEEEecC
Confidence 33444567899987765 566666677799999999 566666654
No 434
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=30.90 E-value=2.9e+02 Score=22.31 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC----c-EEEEcCCCCCCChHHHHHHHh-CCcEEEeCCCCC--c
Q 012436 320 ERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----V-VGIHSMIDEHFGISVVEYMAA-GAIPIAHNSAGP--K 391 (464)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a----d-~~v~ps~~e~~~~~~~Ea~a~-G~PvI~~~~~~~--~ 391 (464)
+..+.+++.+.++|+ .+.|.-.=...++.+.+.++ | +.+.|-.+...+.++.+|+.. ++|+|=-..... .
T Consensus 29 ~i~~~~~~~a~~~g~--~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vEVHiSNi~~R 106 (140)
T PF01220_consen 29 DIEQKCKETAAELGV--EVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVEVHISNIHAR 106 (140)
T ss_dssp HHHHHHHHHHHHTTE--EEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEEEESS-GGGS
T ss_pred HHHHHHHHHHHHCCC--eEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEEEEcCCcccc
Confidence 344566666666654 36666555566676666654 5 456777777888999999865 889885432211 1
Q ss_pred cce-----ecccCCccceeecC-CHHHHHHHHHHHH
Q 012436 392 MDI-----VLEEDGQQTGFLAQ-NAEEYADAIVKII 421 (464)
Q Consensus 392 ~~~-----v~~~~~~~~g~~~~-~~~~la~~i~~l~ 421 (464)
+++ +.+ ...|.+.. -.+...-+++.++
T Consensus 107 E~fR~~S~~s~---~~~g~I~G~G~~gY~lAl~al~ 139 (140)
T PF01220_consen 107 EEFRHHSVISP---VAVGVISGFGADGYLLALEALV 139 (140)
T ss_dssp -GGGG--SSGG---GSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccccccc---ccEEEEEeCCHHHHHHHHHHHh
Confidence 222 222 33566665 6666666666553
No 435
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=30.83 E-value=1.7e+02 Score=26.43 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=20.1
Q ss_pred cchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 50 GERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 50 ~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
..+-...|++.|.+.|.++.-....++
T Consensus 19 vdtNa~~la~~L~~~G~~v~~~~~VgD 45 (255)
T COG1058 19 VDTNAAFLADELTELGVDLARITTVGD 45 (255)
T ss_pred ecchHHHHHHHHHhcCceEEEEEecCC
Confidence 455667889999999977766666654
No 436
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=30.74 E-value=2.2e+02 Score=23.78 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=50.8
Q ss_pred CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
.++..++++|-..-..=....+.-+.++.++......+++++.+.-.|+++. .+.|++.++.++ ++..-+.|..
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DT---p~~L~~Y~~~~~-~~~~~ltg~~-- 124 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDT---PEVLKKYAKKFG-PDFIGLTGSR-- 124 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC----HHHHHHHHHCHT-TTCEEEEEEH--
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCC---HHHHHHHHHhcC-CCcceeEeCH--
Confidence 5668888888765433223333333333332211113899999998877643 367778888776 3345566654
Q ss_pred hHHHHHHhcCcEE
Q 012436 347 RDLVKLLGGAVVG 359 (464)
Q Consensus 347 ~~~~~~l~~ad~~ 359 (464)
+++.++.+...+.
T Consensus 125 ~~i~~l~~~~~v~ 137 (174)
T PF02630_consen 125 EEIEELAKQFGVY 137 (174)
T ss_dssp HHHHHHHHHCTHC
T ss_pred HHHHHHHHHHHhh
Confidence 7777777766543
No 437
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=30.52 E-value=2.7e+02 Score=29.25 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=27.4
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
.++||+++.|-+..- +..+--....|.+.||+|.|++.|...
T Consensus 368 ~~~rvLv~spHPDDe---vi~~GGTlarl~~~G~~V~vv~~TsG~ 409 (652)
T PRK02122 368 YPKRVIIFSPHPDDD---VISMGGTFRRLVEQGHDVHVAYQTSGN 409 (652)
T ss_pred CCceEEEEEeCCCch---HhhhHHHHHHHHHCCCcEEEEEecCCc
Confidence 358999998766542 111112235788899999988888554
No 438
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=30.47 E-value=4.2e+02 Score=24.15 Aligned_cols=119 Identities=11% Similarity=0.003 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhcC----
Q 012436 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGA---- 356 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~a---- 356 (464)
++.+.++++..++.+. .+.+.+.-......+.++..++-+.+.+.|. +.|.+. |...++++.++++..
T Consensus 117 ~~~~~~~i~~ak~~G~----~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga-~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 117 VRNLEVAIKAVKKAGK----HVEGAICYTGSPVHTLEYYVKLAKELEDMGA-DSICIKDMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred HHHHHHHHHHHHHCCC----eEEEEEEecCCCCCCHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 6777778887776641 3333332111122344566666666777773 466664 777777777776653
Q ss_pred --cEEEEcCCCCCCChHH---HHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHH
Q 012436 357 --VVGIHSMIDEHFGISV---VEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKI 420 (464)
Q Consensus 357 --d~~v~ps~~e~~~~~~---~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l 420 (464)
.+.++. +..+|+.+ ++|+.+|.=.|-+...|..+ ..|- .+.++++..+...
T Consensus 192 ~~~l~~H~--Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~---------~aGN--~~~E~l~~~L~~~ 247 (275)
T cd07937 192 GLPIHLHT--HDTSGLAVATYLAAAEAGVDIVDTAISPLSG---------GTSQ--PSTESMVAALRGT 247 (275)
T ss_pred CCeEEEEe--cCCCChHHHHHHHHHHhCCCEEEEecccccC---------CcCC--hhHHHHHHHHHcc
Confidence 244444 56666664 78888899888887777632 1111 1567777777654
No 439
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=30.40 E-value=55 Score=25.84 Aligned_cols=33 Identities=0% Similarity=-0.040 Sum_probs=20.4
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceE
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCI 71 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~ 71 (464)
|||++..... ++... ..++++.|.+.|+++.++
T Consensus 1 k~i~l~vtGs---~~~~~-~~~~l~~L~~~g~~v~vv 33 (129)
T PF02441_consen 1 KRILLGVTGS---IAAYK-APDLLRRLKRAGWEVRVV 33 (129)
T ss_dssp -EEEEEE-SS---GGGGG-HHHHHHHHHTTTSEEEEE
T ss_pred CEEEEEEECH---HHHHH-HHHHHHHHhhCCCEEEEE
Confidence 5677654432 23444 789999999999554433
No 440
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=30.40 E-value=3.4e+02 Score=24.02 Aligned_cols=74 Identities=11% Similarity=-0.098 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCC--CCcEEEccCCChhHHHHHHhcCcEEE
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV--DGNVEFYKNLLYRDLVKLLGGAVVGI 360 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~~~~~~~~l~~ad~~v 360 (464)
+++..++.+... ....+.+-.... ....+.-+.++++|. ...+.+-+..|-+.+..++...|.++
T Consensus 79 ~P~~~i~~~~~a---------Gad~It~H~Ea~----~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VL 145 (228)
T PRK08091 79 DQFEVAKACVAA---------GADIVTLQVEQT----HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQ 145 (228)
T ss_pred CHHHHHHHHHHh---------CCCEEEEcccCc----ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEE
Confidence 567777766655 333333332211 123456677788887 67788888889999999999999765
Q ss_pred EcCCCCCCC
Q 012436 361 HSMIDEHFG 369 (464)
Q Consensus 361 ~ps~~e~~~ 369 (464)
.-|..-||+
T Consensus 146 iMtV~PGfg 154 (228)
T PRK08091 146 ILTLDPRTG 154 (228)
T ss_pred EEEECCCCC
Confidence 544444444
No 441
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=30.26 E-value=1.1e+02 Score=27.37 Aligned_cols=84 Identities=5% Similarity=-0.010 Sum_probs=48.0
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC--ChhHHH
Q 012436 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL--LYRDLV 350 (464)
Q Consensus 273 ~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~ 350 (464)
+|+|-+...-|...+.+.+.+|+++. ++.|+|+.........-.-.+..+...++|+ .+.=.|.- ++.|+.
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~-----~~DfVIaNgENaa~G~Git~~~~~~L~~~Gv--DviT~GNH~wdkkei~ 73 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEY-----GIDFVIANGENAAGGFGITPKIAEELFKAGV--DVITMGNHIWDKKEIF 73 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG-------G-SEEEEE-TTTTTTSS--HHHHHHHHHHT---SEEE--TTTTSSTTHH
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhc-----CCCEEEECCcccCCCCCCCHHHHHHHHhcCC--CEEecCcccccCcHHH
Confidence 57888888889999999999999987 6778888652211000011222233334454 35556644 668999
Q ss_pred HHHhcCcEEEEcC
Q 012436 351 KLLGGAVVGIHSM 363 (464)
Q Consensus 351 ~~l~~ad~~v~ps 363 (464)
+++...+-+|-|.
T Consensus 74 ~~i~~~~~ilRPa 86 (253)
T PF13277_consen 74 DFIDKEPRILRPA 86 (253)
T ss_dssp HHHHH-SSEE--T
T ss_pred HHHhcCCCcEECC
Confidence 9999988788775
No 442
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=30.17 E-value=1.5e+02 Score=22.50 Aligned_cols=68 Identities=13% Similarity=0.042 Sum_probs=41.8
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGA 380 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~ 380 (464)
++++++-+-+.. .+..++..++++.+ .+ .++.++++ ..|+.+..+....-.-.+.+++..|+
T Consensus 24 ~~~~v~~v~d~~-------~~~~~~~~~~~~~~------~~---~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~ 87 (120)
T PF01408_consen 24 PDFEVVAVCDPD-------PERAEAFAEKYGIP------VY---TDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGK 87 (120)
T ss_dssp TTEEEEEEECSS-------HHHHHHHHHHTTSE------EE---SSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTS
T ss_pred CCcEEEEEEeCC-------HHHHHHHHHHhccc------ch---hHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCC
Confidence 366665443332 14555556666643 12 34556666 67877766555444556789999999
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
+|++-.
T Consensus 88 ~v~~EK 93 (120)
T PF01408_consen 88 HVLVEK 93 (120)
T ss_dssp EEEEES
T ss_pred EEEEEc
Confidence 998865
No 443
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=29.68 E-value=3.6e+02 Score=23.72 Aligned_cols=78 Identities=12% Similarity=-0.022 Sum_probs=51.6
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--C
Q 012436 279 RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--A 356 (464)
Q Consensus 279 ~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--a 356 (464)
...+.++.+.+++..+ ++.-++.|+.... .....++++++++|+. .+..+=..+++++...+-. -
T Consensus 70 ~~e~eve~L~~~l~~l---------~~d~iv~GaI~s~---yqk~rve~lc~~lGl~-~~~PLWg~d~~ell~e~~~~Gf 136 (223)
T COG2102 70 EEEREVEELKEALRRL---------KVDGIVAGAIASE---YQKERVERLCEELGLK-VYAPLWGRDPEELLEEMVEAGF 136 (223)
T ss_pred cchhhHHHHHHHHHhC---------cccEEEEchhhhH---HHHHHHHHHHHHhCCE-EeecccCCCHHHHHHHHHHcCC
Confidence 5677888888888888 6778999986532 3346789999999975 3444434455555555544 4
Q ss_pred cEEEEcCCCCCCC
Q 012436 357 VVGIHSMIDEHFG 369 (464)
Q Consensus 357 d~~v~ps~~e~~~ 369 (464)
++.|.....++++
T Consensus 137 ~~~Iv~Vsa~gL~ 149 (223)
T COG2102 137 EAIIVAVSAEGLD 149 (223)
T ss_pred eEEEEEEeccCCC
Confidence 6666554445544
No 444
>PLN02208 glycosyltransferase family protein
Probab=29.36 E-value=4e+02 Score=26.40 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=26.9
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
+.+++++ |++. -|.-.-+.++|+.|+.+| ++|+++++.
T Consensus 4 ~~hvv~~-P~pa--qGHi~P~l~LAk~La~~G--~~VT~vtt~ 41 (442)
T PLN02208 4 KFHAFMF-PWFA--FGHMIPFLHLANKLAEKG--HRVTFLLPK 41 (442)
T ss_pred CCEEEEe-cCcc--ccHHHHHHHHHHHHHhCC--CEEEEEecc
Confidence 4566664 3333 368888899999999999 666666643
No 445
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=29.33 E-value=2.7e+02 Score=23.46 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred HhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCce
Q 012436 22 LASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPK 101 (464)
Q Consensus 22 ~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (464)
|...+-+....++++|.++ ||.+.++..+++.|.+..+.+.+... ....++.+.......
T Consensus 36 l~~~l~~~~~~~~~~vfll-------G~~~~v~~~~~~~l~~~yP~l~i~g~--~g~f~~~~~~~i~~~----------- 95 (177)
T TIGR00696 36 LMEELCQRAGKEKLPIFLY-------GGKPDVLQQLKVKLIKEYPKLKIVGA--FGPLEPEERKAALAK----------- 95 (177)
T ss_pred HHHHHHHHHHHcCCeEEEE-------CCCHHHHHHHHHHHHHHCCCCEEEEE--CCCCChHHHHHHHHH-----------
Q ss_pred eeeeecccccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEeccccc
Q 012436 102 VVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYA 151 (464)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~ 151 (464)
+++.+||+++...+.+
T Consensus 96 ----------------------------------I~~s~~dil~VglG~P 111 (177)
T TIGR00696 96 ----------------------------------IARSGAGIVFVGLGCP 111 (177)
T ss_pred ----------------------------------HHHcCCCEEEEEcCCc
No 446
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=29.32 E-value=4.9e+02 Score=24.92 Aligned_cols=76 Identities=8% Similarity=-0.058 Sum_probs=46.3
Q ss_pred EccCCChhHHHHHHhcCcEEEEcC---CCCCCChHHHHHHHhC------CcEEEeC---CCCCccceecccCCccceeec
Q 012436 340 FYKNLLYRDLVKLLGGAVVGIHSM---IDEHFGISVVEYMAAG------AIPIAHN---SAGPKMDIVLEEDGQQTGFLA 407 (464)
Q Consensus 340 ~~g~~~~~~~~~~l~~ad~~v~ps---~~e~~~~~~~Ea~a~G------~PvI~~~---~~~~~~~~v~~~~~~~~g~~~ 407 (464)
.+..++.+.+.+..+..+.++.-- ...|+|-.+.|.++-. .|+.--. ......... .-+..
T Consensus 264 ~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~l-------e~~~~ 336 (356)
T PLN02683 264 SIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANL-------ERLAL 336 (356)
T ss_pred CCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHH-------HHhhC
Confidence 345567788888888888655432 3457887788877554 3554322 121111111 11345
Q ss_pred CCHHHHHHHHHHHHc
Q 012436 408 QNAEEYADAIVKIIS 422 (464)
Q Consensus 408 ~~~~~la~~i~~l~~ 422 (464)
++++.+.+++.++++
T Consensus 337 p~~~~i~~a~~~~~~ 351 (356)
T PLN02683 337 PQVEDIVRAAKRACY 351 (356)
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999999886
No 447
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=29.30 E-value=71 Score=24.99 Aligned_cols=40 Identities=10% Similarity=0.049 Sum_probs=25.8
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCC-CCceEEEc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESP-DLDCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~-~~~v~~~~ 74 (464)
||+.++....+.|--....+..+++++.+.|| ++.+..|.
T Consensus 1 m~~~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly~ 41 (126)
T COG1553 1 MKYTIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLYQ 41 (126)
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 67777766555542344566789999999974 44444443
No 448
>COG3207 DIT1 Pyoverdine/dityrosine biosynthesis protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.30 E-value=4.3e+02 Score=23.89 Aligned_cols=101 Identities=10% Similarity=-0.001 Sum_probs=55.7
Q ss_pred CCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC------
Q 012436 243 PDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK------ 316 (464)
Q Consensus 243 ~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~------ 316 (464)
..+|.++-+...- +.++..+++...-.+.++=-+..++.+.+.+..-.. |.+++.|+.+|..-
T Consensus 55 ~e~Ie~vLPAFPc--------Ks~N~~KVl~s~PD~gE~l~L~~l~~~~qdi~~~Y~---PG~ki~I~SDghvFsD~I~V 123 (330)
T COG3207 55 GEPIEFVLPAFPC--------KSPNPGKVLDSRPDMGERLSLSFLNHLCQDIQLFYA---PGAKITICSDGHVFSDLIRV 123 (330)
T ss_pred CCceEEEeccCcC--------CCCCccccccCCCChhHHHHHHHHHHHHHHHHHhcC---CCCEEEEEeCCceehhhccc
Confidence 6677777654422 222222333222222222233445555555555554 79999999987432
Q ss_pred ---ccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCc
Q 012436 317 ---SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAV 357 (464)
Q Consensus 317 ---~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad 357 (464)
--..|.+.|+.++++.+.+ .+--+++. ++...+.+..|
T Consensus 124 dddh~s~Y~d~Lr~m~~~i~~~-~i~kI~n~--e~~d~F~~~~d 164 (330)
T COG3207 124 DDDHISAYQDALRLMIEEIGAT-HIGKIFNL--EDVDAFEAQRD 164 (330)
T ss_pred cchhHHHHHHHHHHHHHHcCCC-Cccceeec--chhHHHhhccc
Confidence 1246788899999988865 34434455 45555555555
No 449
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=29.14 E-value=93 Score=28.30 Aligned_cols=36 Identities=11% Similarity=-0.094 Sum_probs=27.6
Q ss_pred HhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCC
Q 012436 353 LGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 353 l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
...+|+++-.|..+...-.+..++..|+|+|+...+
T Consensus 66 ~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg 101 (266)
T TIGR00036 66 ETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTG 101 (266)
T ss_pred cCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCC
Confidence 356899988776665555678999999999986554
No 450
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=29.09 E-value=4.1e+02 Score=26.43 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=60.5
Q ss_pred CCCChHHHHHHHHHHH-HHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE-----------------c
Q 012436 280 PEKAHPLQLEAFSVAL-RKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-----------------Y 341 (464)
Q Consensus 280 ~~K~~~~ll~a~~~l~-~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~-----------------~ 341 (464)
...|.+..++++-+.. ..... ++-.+.|+|.... ..-.++++++.+.+|+..++.+ .
T Consensus 143 ~~~G~~~a~~ali~~~~~~~~~--~~~~VNii~~~~~---~gD~~eik~lL~~~Gl~vn~l~d~~~~d~~~~~~~~~~~~ 217 (457)
T TIGR02932 143 QVTGYAECVKSVIKTIAAKKGE--PSGKLNVFPGWVN---PGDVVLLKHYFSEMGVDANILMDTEDFDSPMLPDKSIFTH 217 (457)
T ss_pred HHHHHHHHHHHHHHHHhhccCC--CCCcEEEECCCCC---hHHHHHHHHHHHHcCCCEEEEeccccccCCCCCCccccCC
Confidence 3468888887776433 21111 3446777775321 1235789999999999866642 3
Q ss_pred cCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHH--hCCcEEEeC
Q 012436 342 KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMA--AGAIPIAHN 386 (464)
Q Consensus 342 g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a--~G~PvI~~~ 386 (464)
|..+-+++... .+|.+-+..+.. .+..+.|+|. +|+|-+..+
T Consensus 218 g~ts~~~i~~~-~~A~~nlv~~~~--~g~~~A~~Lee~fGiPy~~~~ 261 (457)
T TIGR02932 218 GRTTVEDIADS-ANAIATLALAKY--EGGNTAEFLQETFDVPSILVP 261 (457)
T ss_pred CCCCHHHHHhh-hhCcEEEEEccc--chHHHHHHHHHHHCCCeeccC
Confidence 44556777665 666665544332 2456777774 699987644
No 451
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=28.87 E-value=69 Score=19.92 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=15.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhh
Q 012436 1 MAPYGILIWAVITAVLASILILASH 25 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (464)
|-+||.-.|.-.+-.++.+.++...
T Consensus 1 MGgy~~yVW~sYg~t~l~l~~li~~ 25 (45)
T TIGR03141 1 MGGYAFYVWLAYGITALVLAGLILW 25 (45)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHH
Confidence 7788888886555555555444333
No 452
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=28.77 E-value=5.6e+02 Score=25.93 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=43.4
Q ss_pred CccHHHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhcC--------cEEEEcCCCCCCChHH---HHHHHhCCc
Q 012436 316 KSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGA--------VVGIHSMIDEHFGISV---VEYMAAGAI 381 (464)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~a--------d~~v~ps~~e~~~~~~---~Ea~a~G~P 381 (464)
+.+.++..++.+.+.+.|. +.|.+. |...+.++.+++... ++-|.-..+..+|+.+ ++|+.+|.=
T Consensus 235 Rtd~efl~~~~~~a~~~Ga-d~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~ 313 (503)
T PLN03228 235 RSDKEFLCKILGEAIKAGA-TSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGAR 313 (503)
T ss_pred ccCHHHHHHHHHHHHhcCC-CEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCC
Confidence 3455666666666666663 456553 666666666555432 2333334456666663 777888887
Q ss_pred EEEeCCCCC
Q 012436 382 PIAHNSAGP 390 (464)
Q Consensus 382 vI~~~~~~~ 390 (464)
.|-+...|.
T Consensus 314 ~Vd~Tv~Gi 322 (503)
T PLN03228 314 QVEVTINGI 322 (503)
T ss_pred EEEEecccc
Confidence 776655554
No 453
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=28.76 E-value=2.9e+02 Score=29.09 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHh
Q 012436 324 SLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAA 378 (464)
Q Consensus 324 ~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~ 378 (464)
.+++.+.++|++ +.-...++.++..+.++ +.|+++...+..-.+-.+++..-.
T Consensus 44 ~v~~~a~~~~ip--~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~~ii~~~il~~~~~ 98 (660)
T PRK08125 44 SVARLAAELGIP--VYAPEDVNHPLWVERIRELAPDVIFSFYYRNLLSDEILQLAPA 98 (660)
T ss_pred HHHHHHHHcCCc--EEeeCCCCcHHHHHHHHhcCCCEEEEccccccCCHHHHhhcCC
Confidence 466666666664 33333343334444443 356555544433344334443333
No 454
>PRK13761 hypothetical protein; Provisional
Probab=28.62 E-value=4e+02 Score=23.45 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=50.2
Q ss_pred HhcCcEEEEcCCCCCCChHHHHHH-HhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHH
Q 012436 353 LGGAVVGIHSMIDEHFGISVVEYM-AAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEM 431 (464)
Q Consensus 353 l~~ad~~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~ 431 (464)
+-.||+++.|.- +|=- .||+ .+|+-||+-|.... ..-... .+--+ .|.+..++-.+.. --.+.+..
T Consensus 148 Iy~ADVVLVPLE-DGDR---~EaL~~mGK~VI~IDLNPL-SRTar~----A~itI---VDni~RA~p~m~~-~~~elk~~ 214 (248)
T PRK13761 148 IYSADVVLVPLE-DGDR---TEALVKMGKTVIAIDLNPL-SRTART----ATITI---VDNITRAVPNMTE-YARELKKK 214 (248)
T ss_pred ceeccEEEecCC-CCcH---HHHHHHcCCeEEEEeCCCc-cccccc----Cceee---ehhHHHHHHHHHH-HHHHHhcC
Confidence 456899999942 2211 2454 57999999987654 221111 11122 3344444444443 22222222
Q ss_pred HHHH-HHHHHccCHHHHHHHHHHHHHHHHh
Q 012436 432 AAAA-RRRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 432 ~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
.... .+.++.|+-+.....-++.+.+-+.
T Consensus 215 ~~~el~~iv~~~dN~~~L~~al~~I~~rl~ 244 (248)
T PRK13761 215 DREELEEIVENYDNKKNLSEALKEIRERLT 244 (248)
T ss_pred CHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 2222 3344888888887777776665443
No 455
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=28.46 E-value=3.3e+02 Score=24.95 Aligned_cols=72 Identities=18% Similarity=-0.007 Sum_probs=36.3
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCcc-HHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC
Q 012436 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSD-EERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA 356 (464)
Q Consensus 280 ~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~-~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a 356 (464)
..+.++.+++.++.+.+.+. ..+.++..|..+.... .++.+.+.+.+++.++.-.+ -.|.++.+.+ +.++.|
T Consensus 60 ~~~~~eei~~~~~~~~~~g~---~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~-~~g~~~~e~l-~~Lk~a 132 (296)
T TIGR00433 60 RLKKVDEVLEEARKAKAAGA---TRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCA-TLGLLDPEQA-KRLKDA 132 (296)
T ss_pred cCCCHHHHHHHHHHHHHCCC---CEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEe-cCCCCCHHHH-HHHHHc
Confidence 34556778887777665421 1222333344333222 34566666666666654222 2366665544 455443
No 456
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=28.33 E-value=3.3e+02 Score=22.16 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC----c-EEEEcCCCCCCChHHHHHHH-hCCcEEEe---CCCCCc
Q 012436 321 RLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----V-VGIHSMIDEHFGISVVEYMA-AGAIPIAH---NSAGPK 391 (464)
Q Consensus 321 ~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a----d-~~v~ps~~e~~~~~~~Ea~a-~G~PvI~~---~~~~~~ 391 (464)
..+.+++.++++|+ .+.|.-.-...++.+.++++ | +.+.|--+...+.++.+|++ .++|+|=- +.-.-
T Consensus 31 i~~~~~~~a~~~g~--~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aR- 107 (146)
T PRK13015 31 VEALCRAAAEALGL--EVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEVHISNVHAR- 107 (146)
T ss_pred HHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcCCcccc-
Confidence 33455555555554 35555544455666655543 5 55667667778889999885 48999853 33221
Q ss_pred cc-----eecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 392 MD-----IVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 392 ~~-----~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
++ ++.+ ...|.+.. -++...-++..+++
T Consensus 108 E~fR~~S~is~---~~~G~I~G~G~~gY~lAl~al~~ 141 (146)
T PRK13015 108 EAFRHHSYVSA---IADGVICGLGTEGYRLALRRLAT 141 (146)
T ss_pred ccccccccccC---ceeEEEeeCCHHHHHHHHHHHHH
Confidence 22 3333 45566665 67777777766654
No 457
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=28.32 E-value=55 Score=26.05 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=31.2
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChH--HHHHHH------hCC-cEEEeCCCCCcccee
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGIS--VVEYMA------AGA-IPIAHNSAGPKMDIV 395 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~--~~Ea~a------~G~-PvI~~~~~~~~~~~v 395 (464)
+....++..||.+|.- ..|+|.- ++|+++ ..+ |+|..+..|.+..++
T Consensus 45 ~Rk~~m~~~sda~I~l--PGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~ 100 (133)
T PF03641_consen 45 ERKEIMIESSDAFIAL--PGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLL 100 (133)
T ss_dssp HHHHHHHHHESEEEEE--S-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHH
T ss_pred HHHHHHHHhCCEEEEE--ecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHH
Confidence 5566778889987654 2566654 577777 445 999988776655544
No 458
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=28.29 E-value=97 Score=28.10 Aligned_cols=80 Identities=13% Similarity=0.042 Sum_probs=48.1
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE---ccCCChhHHHHHHhc
Q 012436 279 RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF---YKNLLYRDLVKLLGG 355 (464)
Q Consensus 279 ~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~---~g~~~~~~~~~~l~~ 355 (464)
....+++.+++++........ ++--++++|.|........+..|+...++.+.+ |+.+ -|+.+-+++.+-++.
T Consensus 119 ~~~~D~~~va~aL~~~~~~~~---~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~-~v~vgtvEG~P~~~~vi~~L~~ 194 (262)
T PF06180_consen 119 NSPEDYEAVAEALAEEFPKKR---KDEAVVLMGHGTPHPANAAYSALQAMLKKHGYP-NVFVGTVEGYPSLEDVIARLKK 194 (262)
T ss_dssp -SHHHHHHHHHHHHCCS-TT----TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-T-TEEEEETTSSSBHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhccccC---CCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCC-eEEEEEeCCCCCHHHHHHHHHh
Confidence 344556666666654322111 377899999998776666778888888886643 4433 356566787777776
Q ss_pred Cc---EEEEc
Q 012436 356 AV---VGIHS 362 (464)
Q Consensus 356 ad---~~v~p 362 (464)
.. +.+.|
T Consensus 195 ~g~k~V~L~P 204 (262)
T PF06180_consen 195 KGIKKVHLIP 204 (262)
T ss_dssp HT-SEEEEEE
T ss_pred cCCCeEEEEe
Confidence 44 77777
No 459
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=28.26 E-value=44 Score=22.02 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.7
Q ss_pred HHHHHHHhCCcEEEeC
Q 012436 371 SVVEYMAAGAIPIAHN 386 (464)
Q Consensus 371 ~~~Ea~a~G~PvI~~~ 386 (464)
.+.|++.+|.||++--
T Consensus 16 kI~esav~G~pVvALC 31 (58)
T PF11238_consen 16 KIAESAVMGTPVVALC 31 (58)
T ss_pred HHHHHHhcCceeEeee
Confidence 4899999999999843
No 460
>PLN02828 formyltetrahydrofolate deformylase
Probab=28.24 E-value=4.6e+02 Score=23.89 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=31.8
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGV 94 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 94 (464)
.+++||+++.+ |...-+.+|..+..+-..+.++..+.+..+.............+|+
T Consensus 68 ~~~~riavlvS------g~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gI 124 (268)
T PLN02828 68 DPKYKIAVLAS------KQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGI 124 (268)
T ss_pred CCCcEEEEEEc------CCChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCC
Confidence 46789998755 3444566777777665445666665544321122233344455565
No 461
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.22 E-value=4e+02 Score=23.16 Aligned_cols=94 Identities=10% Similarity=0.045 Sum_probs=47.4
Q ss_pred HhcCcEEEEcCCCCCCChHHHHHH-HhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHH
Q 012436 353 LGGAVVGIHSMIDEHFGISVVEYM-AAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEM 431 (464)
Q Consensus 353 l~~ad~~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~ 431 (464)
+-.||+++.|.- +|=- .||+ -+|+-||+-|.... ..-... ..+. -.|.+..++..+..+-.+....-
T Consensus 151 Iy~ADVVLvpLE-DGDR---teaLv~mGK~ViaIDLNPL-SRTar~-----AsIt--IVDnivRA~p~li~~~~em~~~~ 218 (256)
T COG1701 151 IYSADVVLVPLE-DGDR---TEALVRMGKTVIAIDLNPL-SRTARK-----ASIT--IVDNIVRAVPNLIEFVKEMKNAS 218 (256)
T ss_pred ceeccEEEEecC-CCcH---HHHHHHhCCeEEEEeCCcc-cccccc-----Ccee--eeHHHHHHHHHHHHHHHHHhccC
Confidence 446899999943 2211 2444 47999999887655 222111 1111 24455555555554111111111
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHH
Q 012436 432 AAAARRRAARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 432 ~~~~~~~~~~~s~~~~~~~~~~~~~~~ 458 (464)
.+...+.+++|+-..+..+.++.+.+-
T Consensus 219 reel~~iv~~ydN~~~l~eal~~I~~r 245 (256)
T COG1701 219 REELEEIVENYDNKEVLAEALKHIAER 245 (256)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 223334446777777666655555443
No 462
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=27.98 E-value=5.8e+02 Score=24.94 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHH--hCCc
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMA--AGAI 381 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a--~G~P 381 (464)
+-.+.++|..... .-.++++++.+++|+..+..+.|..+.+|+.+ +.+|.+-+..+... +....+.|. +|+|
T Consensus 162 ~~~VNliG~~~~~---~d~~ei~~lL~~~Gl~v~~~~~~~~t~~ei~~-~~~A~lnlv~~~~~--~~~~A~~L~er~GiP 235 (415)
T cd01977 162 DYTINYIGDYNIQ---GDTEVLQKYFERMGIQVLSTFTGNGTYDDLRW-MHRAKLNVVNCARS--AGYIANELKKRYGIP 235 (415)
T ss_pred CCcEEEEccCCCc---ccHHHHHHHHHHcCCeEEEEECCCCCHHHHHh-cccCCEEEEEchhH--HHHHHHHHHHHhCCC
Confidence 3467788854322 12378999999999987777888877788765 66667655442222 345666665 6999
Q ss_pred EEEeC
Q 012436 382 PIAHN 386 (464)
Q Consensus 382 vI~~~ 386 (464)
.+..+
T Consensus 236 ~~~~~ 240 (415)
T cd01977 236 RLDVD 240 (415)
T ss_pred eEEec
Confidence 88764
No 463
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.97 E-value=43 Score=26.56 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 012436 9 WAVITAVLASIL 20 (464)
Q Consensus 9 ~~~~~~~~~~~~ 20 (464)
|++|+-+++.++
T Consensus 5 ~~iii~~i~l~~ 16 (130)
T PF12273_consen 5 FAIIIVAILLFL 16 (130)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 464
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=27.87 E-value=3.3e+02 Score=24.84 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=22.8
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
|+++.+|||+++ |..+.-..+++.|.+...++++..+.
T Consensus 1 ~~~m~~irIGII--------G~G~IG~~~a~~L~~~~~~~el~aV~ 38 (271)
T PRK13302 1 MSSRPELRVAIA--------GLGAIGKAIAQALDRGLPGLTLSAVA 38 (271)
T ss_pred CCCCCeeEEEEE--------CccHHHHHHHHHHHhcCCCeEEEEEE
Confidence 456778999997 34444455677776531236665443
No 465
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=27.86 E-value=4.2e+02 Score=24.73 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=26.1
Q ss_pred cccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 30 RRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 30 ~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
...++..|+++.+..... ....++..+.+.+.+.|+ ..+++.+
T Consensus 20 ~~~~~~~Igvv~~~~~~~-f~~~~~~gi~~~a~~~g~-~~~~~~~ 62 (330)
T PRK15395 20 AAAADTRIGVTIYKYDDN-FMSVVRKAIEKDAKAAPD-VQLLMND 62 (330)
T ss_pred hhcCCceEEEEEecCcch-HHHHHHHHHHHHHHhcCC-eEEEEec
Confidence 455667899887765433 456666666677777652 3444434
No 466
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=27.50 E-value=6e+02 Score=24.98 Aligned_cols=100 Identities=10% Similarity=0.080 Sum_probs=58.2
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcE------------------EEcc
Q 012436 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV------------------EFYK 342 (464)
Q Consensus 281 ~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v------------------~~~g 342 (464)
..|.+..++++-+....... ++-.+.++|..... .-.++++++.+.+|+..++ .+.|
T Consensus 134 ~~G~~~a~~al~~~~~~~~~--~~~~VNlig~~~~~---~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~ 208 (429)
T cd03466 134 VEGYDTAVRSIVKNIAVDPD--KIEKINVIAGMMSP---ADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSG 208 (429)
T ss_pred HHHHHHHHHHHHHHhccCCC--CCCcEEEECCCCCh---hHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCC
Confidence 35788787777542211110 24568888754322 2358899999999987422 1123
Q ss_pred CCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHH--hCCcEEEeC
Q 012436 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMA--AGAIPIAHN 386 (464)
Q Consensus 343 ~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a--~G~PvI~~~ 386 (464)
..+-+++.+ +.+|++-|.-+.....+....|+|. +|+|.+...
T Consensus 209 g~~~~~i~~-~~~A~lniv~~~~~~~g~~~A~~L~e~~giP~~~~~ 253 (429)
T cd03466 209 GTPISEIKG-MGGAKATIELGMFVDHGLSAGSYLEEEFGIPNYRLP 253 (429)
T ss_pred CCCHHHHHh-hccCcEEEEEccCccchHHHHHHHHHHHCCCeeecC
Confidence 434566654 5555665544433345677777774 799977654
No 467
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=27.47 E-value=2.8e+02 Score=27.56 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=57.8
Q ss_pred CCCChHHHHHHHHH-HHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE-----------------c
Q 012436 280 PEKAHPLQLEAFSV-ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-----------------Y 341 (464)
Q Consensus 280 ~~K~~~~ll~a~~~-l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~-----------------~ 341 (464)
...|.+..++++-+ +..... |+-.+.|+|.... ..-.++++++.+.+|+..++.+ .
T Consensus 140 ~~~G~~~a~~ali~~~~~~~~---~~~~VNii~~~~~---~~D~~ei~~lL~~~Gl~v~~~~d~~~~d~~~~~~~~~~~~ 213 (454)
T cd01973 140 MVTGYDEAVRSVVKTIAKKGA---PSGKLNVFTGWVN---PGDVVELKHYLSEMDVEANILMDTEDFDSPMLPDKSAVTH 213 (454)
T ss_pred HHHHHHHHHHHHHHHhcccCC---CCCcEEEECCCCC---hHHHHHHHHHHHHcCCCEEEeeccccccCCCCCcccccCC
Confidence 44688888877754 322211 3446777775322 2346899999999999866653 2
Q ss_pred cCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHH--hCCcEEEeC
Q 012436 342 KNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMA--AGAIPIAHN 386 (464)
Q Consensus 342 g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a--~G~PvI~~~ 386 (464)
|..+-+++.+. .+|.+-+..+.. .+..+.|+|. +|+|.+..+
T Consensus 214 g~~~~~~i~~~-~~A~~niv~~~~--~~~~~A~~Le~~fGiPyi~~~ 257 (454)
T cd01973 214 GNTTIEDIADS-ANAIATIALARY--EGGKAAEFLQKKFDVPAILGP 257 (454)
T ss_pred CCCCHHHHHHh-hhCcEEEEEChh--hhHHHHHHHHHHHCCCeeccC
Confidence 34445666443 344544443222 3456666664 699988654
No 468
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=27.39 E-value=5.7e+02 Score=26.02 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhcC----cEEEEcCCCCCCChHH---HHHHHhCCcEEEeCCCC
Q 012436 320 ERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGA----VVGIHSMIDEHFGISV---VEYMAAGAIPIAHNSAG 389 (464)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~a----d~~v~ps~~e~~~~~~---~Ea~a~G~PvI~~~~~~ 389 (464)
++.-++-+.+.+.|. +.+.+. |...+.++.+++... ++-|.-..+..+|+.+ ++|+.+|.-.|-+...|
T Consensus 158 ~~l~~~~~~~~~~Ga-d~i~l~DTvG~~~P~~v~~li~~l~~~~~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~G 236 (524)
T PRK12344 158 EYALATLKAAAEAGA-DWVVLCDTNGGTLPHEVAEIVAEVRAAPGVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTING 236 (524)
T ss_pred HHHHHHHHHHHhCCC-CeEEEccCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccc
Confidence 333333333444442 244432 444444444444332 3333323344444443 55666666666554444
Q ss_pred C
Q 012436 390 P 390 (464)
Q Consensus 390 ~ 390 (464)
.
T Consensus 237 l 237 (524)
T PRK12344 237 Y 237 (524)
T ss_pred c
Confidence 3
No 469
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=27.17 E-value=2.3e+02 Score=24.06 Aligned_cols=102 Identities=12% Similarity=-0.007 Sum_probs=47.1
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
+.+.+.+.+.++..-. ...++.++++. |+.++++....+.. .+..++.... ...+.+.+.=....
T Consensus 22 ~~iWiHa~SvGE~~a~---~~Li~~l~~~~----p~~~illT~~T~tg-----~~~~~~~~~~---~v~~~~~P~D~~~~ 86 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAA---RPLIKRLRKQR----PDLRILLTTTTPTG-----REMARKLLPD---RVDVQYLPLDFPWA 86 (186)
T ss_dssp T-EEEE-SSHHHHHHH---HHHHHHHTT-------TS-EEEEES-CCH-----HHHHHGG-GG---G-SEEE---SSHHH
T ss_pred CcEEEEECCHHHHHHH---HHHHHHHHHhC----CCCeEEEEecCCch-----HHHHHHhCCC---CeEEEEeCccCHHH
Confidence 4566666655544333 33344444444 78999998875532 1333333221 12344544323455
Q ss_pred HHHHHhcC--cEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 349 LVKLLGGA--VVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 349 ~~~~l~~a--d~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
+..+++.. |++|.. ..|-+|.-+.++-..|+|++.-|
T Consensus 87 ~~rfl~~~~P~~~i~~-EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 87 VRRFLDHWRPDLLIWV-ETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp HHHHHHHH--SEEEEE-S----HHHHHH-----S-EEEEE
T ss_pred HHHHHHHhCCCEEEEE-ccccCHHHHHHHhhcCCCEEEEe
Confidence 66777764 677665 67899999999999999999866
No 470
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=27.04 E-value=81 Score=27.82 Aligned_cols=37 Identities=30% Similarity=0.309 Sum_probs=20.4
Q ss_pred hhhcCCcEEEecccccccc-h-hhh----ccCceEEEEeeCCc
Q 012436 136 LCKFTPLYYFDTSGYAFTY-P-LAR----IFGCRVICYTHYPT 172 (464)
Q Consensus 136 l~~~~~Dvv~~~~~~~~~~-~-~~~----~~~~p~v~~~h~p~ 172 (464)
+++.+||+++..+..+..- | -++ ..++|.|+....|.
T Consensus 55 ~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~ 97 (276)
T PF01993_consen 55 LKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPT 97 (276)
T ss_dssp HHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGG
T ss_pred HHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCc
Confidence 5678999887666554442 2 333 47999998777554
No 471
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=26.96 E-value=2e+02 Score=25.32 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=43.3
Q ss_pred ccCCCCC-hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc
Q 012436 277 QFRPEKA-HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (464)
Q Consensus 277 ~~~~~K~-~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ 355 (464)
-++|.|- .+...+.++.+... ....+++|+...-.. +..+++-+.+++..++ -|.|.|.. + .+-..
T Consensus 5 liDPdK~~~~~~~~~~~~~~~~------gtdai~vGGS~~vt~-~~~~~~v~~ik~~~lP-vilfp~~~--~---~i~~~ 71 (223)
T TIGR01768 5 LIDPDKTNPSEADEIAKAAAES------GTDAILIGGSQGVTY-EKTDTLIEALRRYGLP-IILFPSNP--T---NVSRD 71 (223)
T ss_pred eECCCCCCccccHHHHHHHHhc------CCCEEEEcCCCcccH-HHHHHHHHHHhccCCC-EEEeCCCc--c---ccCcC
Confidence 3456663 22333455555443 456778886543222 3445666677777765 56666655 2 33466
Q ss_pred CcEEEEcCC
Q 012436 356 AVVGIHSMI 364 (464)
Q Consensus 356 ad~~v~ps~ 364 (464)
+|.+++||.
T Consensus 72 aDa~l~~sv 80 (223)
T TIGR01768 72 ADALFFPSV 80 (223)
T ss_pred CCEEEEEEe
Confidence 999999973
No 472
>PRK07283 hypothetical protein; Provisional
Probab=26.87 E-value=2.7e+02 Score=20.74 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=37.6
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHH
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVE 374 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~E 374 (464)
...++|+...... +..+.+.+.++.++++ +. ...+.+|+-..+..- ..++.-..+||.-.+++
T Consensus 34 k~~lVi~A~Das~---~~~kk~~~~~~~~~Vp--~~--~~~t~~eLG~a~Gk~-~~vvai~d~g~a~~l~~ 96 (98)
T PRK07283 34 QAKLVFLANDAGP---NLTKKVTDKSNYYQVE--VS--TVFSTLELSAAVGKP-RKVLAVTDAGFSKKMRS 96 (98)
T ss_pred CccEEEEeCCCCH---HHHHHHHHHHHHcCCC--EE--EeCCHHHHHHHhCCC-ceEEEEeChhHHHHHHH
Confidence 6677777754322 4556777777776654 22 223558888888874 33333356677665554
No 473
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=26.85 E-value=5.1e+02 Score=23.94 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=46.8
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC-CcEEEccCCC-h
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLL-Y 346 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~-~ 346 (464)
+.++++...- =+..++|...+.+.. ..+++++|+. +.+++.++++++. +++.++..-+ .
T Consensus 13 ~~ri~~~~~~-----d~~vl~A~~~~~~~~-----~~~~iLvG~~---------~~I~~~~~~~~l~~~~ieIi~~~~~~ 73 (294)
T TIGR02706 13 MKTVAVAVAQ-----DEPVLEAVKEAKEHG-----IARAILVGDE---------EKINEIAKKIGMNLDDVEIVNAPSPK 73 (294)
T ss_pred CCeEEEeCCC-----CHHHHHHHHHHHHCC-----CceEEEECCH---------HHHHHHHHHcCCCccCcEEECCCCcH
Confidence 3566666531 256678888776653 6899999974 5677777776652 3566655421 1
Q ss_pred hHH---HHHHh--cCcEEEEcC
Q 012436 347 RDL---VKLLG--GAVVGIHSM 363 (464)
Q Consensus 347 ~~~---~~~l~--~ad~~v~ps 363 (464)
+.+ ..+++ .+|.++...
T Consensus 74 ~s~~~a~~lv~~G~aD~~vsg~ 95 (294)
T TIGR02706 74 KAALLAVRLVSTGKADMLMKGL 95 (294)
T ss_pred HHHHHHHHHHHCCCCCEEEeCC
Confidence 222 34455 789888553
No 474
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=26.84 E-value=4.9e+02 Score=23.70 Aligned_cols=141 Identities=21% Similarity=0.204 Sum_probs=66.7
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCC-CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh-h
Q 012436 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLP-RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY-R 347 (464)
Q Consensus 270 ~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p-~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~-~ 347 (464)
..++.++.-.+.|.++.++++++.- | .+.+=..|.|.. ..-....+.+..|+. +.++++-.. +
T Consensus 79 ~~vl~v~~dsp~~t~~eli~~ak~~--------p~~~~~g~~g~g~~-----~hl~~~~l~~~~G~~--~~~Vpy~G~~~ 143 (274)
T PF03401_consen 79 PNVLVVRADSPYKTLEELIEYAKAN--------PGKLTFGSSGPGSS-----DHLAAALLAKAAGIK--FTHVPYDGGAE 143 (274)
T ss_dssp EEEEEEETTSS-SSHHHHHHHHHCS--------CCC-EEEESSTTSH-----HHHHHHHHHHHHT-----EEEE-SSHHH
T ss_pred ceEEEEeCCCccccHHHHHHHHHhC--------CCCeEEEecCCCch-----HHHHHHHHHHHhCCc--eEEEEeCCccH
Confidence 5677787778899999999887653 2 334433333321 112233445566654 444444322 4
Q ss_pred HHHHHHhc-CcEEEEcCCCCCCChHHHHHHHhCCc-EEE-eC---------CCCCc----cceecccCCccceeecC--C
Q 012436 348 DLVKLLGG-AVVGIHSMIDEHFGISVVEYMAAGAI-PIA-HN---------SAGPK----MDIVLEEDGQQTGFLAQ--N 409 (464)
Q Consensus 348 ~~~~~l~~-ad~~v~ps~~e~~~~~~~Ea~a~G~P-vI~-~~---------~~~~~----~~~v~~~~~~~~g~~~~--~ 409 (464)
-+..++.. .|+.+.. ..........|.- +|+ +. ++... .++... ...|+..+ .
T Consensus 144 ~~~allgG~vd~~~~~------~~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~---~~~g~~~p~gt 214 (274)
T PF03401_consen 144 ALTALLGGHVDAAFGS------PGEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFG---SWRGLFAPKGT 214 (274)
T ss_dssp HHHHHHTTSSSEEEEE------HHHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--E---EEEEEEEETTS
T ss_pred HHHHHhCCeeeEEeec------HHHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeee---eeeeeecCCCC
Confidence 45555543 6776543 2234455555552 222 11 11110 011111 23455554 4
Q ss_pred HH----HHHHHHHHHHcCCHHHHHHHHHHH
Q 012436 410 AE----EYADAIVKIISMPETERLEMAAAA 435 (464)
Q Consensus 410 ~~----~la~~i~~l~~~~~~~~~~~~~~~ 435 (464)
++ .+.+++.++++ |++..+.+.+.+
T Consensus 215 p~~~~~~l~~a~~~~~~-~pe~~~~~~~~g 243 (274)
T PF03401_consen 215 PDEIVDKLADAIKKALE-DPEFQEFLEKMG 243 (274)
T ss_dssp -HHHHHHHHHHHHHHHT--HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhC-CHHHHHHHHHCC
Confidence 44 46667777777 887766665544
No 475
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=26.84 E-value=3.8e+02 Score=22.38 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~ 364 (464)
.+-+++|+|.|..- -..+.+...+.|. +|.+..+. .+++.+.++.||+++....
T Consensus 43 ~gk~vlViG~G~~~-----G~~~a~~L~~~g~--~V~v~~r~-~~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 43 AGKKVVVVGRSNIV-----GKPLAALLLNRNA--TVTVCHSK-TKNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCEEEEECCcHHH-----HHHHHHHHhhCCC--EEEEEECC-chhHHHHHhhCCEEEEcCC
Confidence 47899999998310 1224444444442 46666553 4789999999999998754
No 476
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=26.79 E-value=74 Score=25.15 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=23.4
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
...+|||.|+ |+.++-..|+++|.+.| +.|.-+.
T Consensus 7 ~~~~l~I~iI--------GaGrVG~~La~aL~~ag--~~v~~v~ 40 (127)
T PF10727_consen 7 QAARLKIGII--------GAGRVGTALARALARAG--HEVVGVY 40 (127)
T ss_dssp -----EEEEE--------CTSCCCCHHHHHHHHTT--SEEEEES
T ss_pred CCCccEEEEE--------CCCHHHHHHHHHHHHCC--CeEEEEE
Confidence 3456999998 67788889999999999 5555544
No 477
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.77 E-value=4.6e+02 Score=23.86 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=34.9
Q ss_pred hcCcEEEEcCCCCCCChHHHHHHHh-----CCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 354 GGAVVGIHSMIDEHFGISVVEYMAA-----GAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 354 ~~ad~~v~ps~~e~~~~~~~Ea~a~-----G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
..+|+++.- |.--+++.|... .+|++.-+.+ |..||+.+ +++++.+++.++++
T Consensus 38 ~~~D~vi~l----GGDGT~L~a~~~~~~~~~~pilgIn~~------------G~lGFL~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 38 KNANIIVSI----GGDGTFLQAVRKTGFREDCLYAGISTK------------DQLGFYCDFHIDDLDKMIQAITK 96 (264)
T ss_pred CCccEEEEE----CCcHHHHHHHHHhcccCCCeEEeEecC------------CCCeEcccCCHHHHHHHHHHHHc
Confidence 457877654 222355555432 5677766653 35688887 89999999999886
No 478
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=26.74 E-value=6.7e+02 Score=25.30 Aligned_cols=115 Identities=18% Similarity=0.050 Sum_probs=65.1
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC--------ChhHHHH
Q 012436 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL--------LYRDLVK 351 (464)
Q Consensus 280 ~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--------~~~~~~~ 351 (464)
..-+.+.+++++++. ++..++.|.|...++. .+.+.+++.| +.|+|.- +.....+
T Consensus 59 syld~~~i~~~a~~~---------~~daI~pg~gflsE~~----~~a~~~e~~g----i~~iGps~~~i~~~~DK~~~k~ 121 (499)
T PRK08654 59 SYLNIERIIDVAKKA---------GADAIHPGYGFLAENP----EFAKACEKAG----IVFIGPSSDVIEAMGSKINAKK 121 (499)
T ss_pred CccCHHHHHHHHHHh---------CCCEEEECCCccccCH----HHHHHHHHCC----CcEECCCHHHHHHhCCHHHHHH
Confidence 344677788777665 6777888876443332 3334444443 5555532 3356667
Q ss_pred HHhcCcEEEEcCCCCC-CChH-HHH-HHHhCCcEEEeCCCCCccceecccCCccce-eecCCHHHHHHHHHHHH
Q 012436 352 LLGGAVVGIHSMIDEH-FGIS-VVE-YMAAGAIPIAHNSAGPKMDIVLEEDGQQTG-FLAQNAEEYADAIVKII 421 (464)
Q Consensus 352 ~l~~ad~~v~ps~~e~-~~~~-~~E-a~a~G~PvI~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~la~~i~~l~ 421 (464)
+++++.+-+.|..... .... +.+ +-..|-|+|.=...|. +..| .++.+.+++.+++....
T Consensus 122 ~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~~Gg----------GG~Gv~iv~~~~eL~~a~~~~~ 185 (499)
T PRK08654 122 LMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKASAGG----------GGIGMRVVYSEEELEDAIESTQ 185 (499)
T ss_pred HHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeCCCC----------CCCeEEEeCCHHHHHHHHHHHH
Confidence 7888887665543211 1111 111 2245889998654433 2344 45578888888877653
No 479
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=26.57 E-value=5.5e+02 Score=24.18 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=31.1
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc
Q 012436 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY 341 (464)
Q Consensus 281 ~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~ 341 (464)
..+++.+++++.....+. +.++++++|+. +.+++.+++.+ .++.++
T Consensus 3 D~~p~~vv~aa~~a~~~~----~~~~~iLvGd~---------~~I~~~l~~~~--~~i~Ii 48 (322)
T TIGR00182 3 DHAPSEVIDGVLKYASAN----QDLHIILVGDK---------DAIEPHLDKLP--KNITII 48 (322)
T ss_pred CcChHHHHHHHHHHHHhC----CCceEEEEcCH---------HHHHHHHHhCC--CCcEEE
Confidence 467888999988844443 47899999975 56666666553 245554
No 480
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.53 E-value=3e+02 Score=28.36 Aligned_cols=113 Identities=19% Similarity=0.109 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHH----------HHHh
Q 012436 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLV----------KLLG 354 (464)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~----------~~l~ 354 (464)
+.+++.+++.... +..++.|+......+..+...++.+..++.++. +.+.... ...+. .-..
T Consensus 276 ~~l~~~l~~~w~~-----~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~--v~~~~~~-~~~~~~~~~~~~~~~~~~~ 347 (569)
T PRK14076 276 KKLVGIFGNKWRI-----KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIP--YELESFL-YNKLKNRLNEECNLIDDIE 347 (569)
T ss_pred HHHHHhhhhhccc-----CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCE--EEEechh-hhhhccccccccccccccc
Confidence 4555555443333 245788887754443444455666655555542 2222110 00000 1123
Q ss_pred cCcEEEEcCCCCCCChHHHHHHH----hCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 355 GAVVGIHSMIDEHFGISVVEYMA----AGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 355 ~ad~~v~ps~~e~~~~~~~Ea~a----~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
.+|+++.- .| --+++.|.. .++|++.-+. |..||+.+ +++++.+++.++++
T Consensus 348 ~~dlvi~l---GG-DGT~L~aa~~~~~~~~PilGin~-------------G~lGFL~~~~~~~~~~~l~~~~~ 403 (569)
T PRK14076 348 EISHIISI---GG-DGTVLRASKLVNGEEIPIICINM-------------GTVGFLTEFSKEEIFKAIDSIIS 403 (569)
T ss_pred CCCEEEEE---CC-cHHHHHHHHHhcCCCCCEEEEcC-------------CCCCcCcccCHHHHHHHHHHHHc
Confidence 56776644 22 224444433 4778887664 35677887 89999999999986
No 481
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=26.47 E-value=2.4e+02 Score=25.25 Aligned_cols=90 Identities=18% Similarity=0.104 Sum_probs=49.1
Q ss_pred hHHHHHHhcCcEEEEcC-CCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc-C
Q 012436 347 RDLVKLLGGAVVGIHSM-IDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS-M 423 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps-~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~-~ 423 (464)
..-.+-++.||+++... ..|++--.+.++.......+..-..+...+--.+ +..-|+-+ +...++++|.+.+. +
T Consensus 39 p~d~~~l~~Adlvv~~G~~~e~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~---npH~Wldp~~~~~~~~~Ia~~L~~~ 115 (256)
T PF01297_consen 39 PSDIKKLQKADLVVYNGLGLEPWLEKLLESSQNPKVKVIDLSEGIDLDHHGH---NPHVWLDPENAKKMAEAIADALSEL 115 (256)
T ss_dssp HHHHHHHHHSSEEEES-TTTSCCHHHHHHTTTTTTTEEEETTTTS-GSTTCB---ESTGGGSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCEEEEeCCccchhhhhhhhcccccccceEEeecccccccCCC---CCchHHHHHHHHHHHHHHHHHHHHh
Confidence 44446678999998864 4677755555444444444444333331100111 23334444 55666666655443 3
Q ss_pred CHHHHHHHHHHHHHHH
Q 012436 424 PETERLEMAAAARRRA 439 (464)
Q Consensus 424 ~~~~~~~~~~~~~~~~ 439 (464)
+|+..+...+|+.++.
T Consensus 116 ~P~~~~~y~~N~~~~~ 131 (256)
T PF01297_consen 116 DPANKDYYEKNAEKYL 131 (256)
T ss_dssp TGGGHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHH
Confidence 7777777777776655
No 482
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.36 E-value=4e+02 Score=24.88 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=35.7
Q ss_pred hcCcEEEEcCCCCCCChHHHHHH----HhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 354 GGAVVGIHSMIDEHFGISVVEYM----AAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 354 ~~ad~~v~ps~~e~~~~~~~Ea~----a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
+.+|+.+.- .|=| +++.|. ..++|++.-+. |.-||+.+ +++++.+++.++++
T Consensus 71 ~~~D~vi~l---GGDG-T~L~aar~~~~~~~PilGIN~-------------G~lGFL~~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 71 DGCELVLVL---GGDG-TILRAAELARAADVPVLGVNL-------------GHVGFLAEAEAEDLDEAVERVVD 127 (306)
T ss_pred cCCCEEEEE---cCCH-HHHHHHHHhccCCCcEEEEec-------------CCCceeccCCHHHHHHHHHHHHc
Confidence 468987754 2223 444433 34788887663 45688888 89999999999987
No 483
>PRK07308 flavodoxin; Validated
Probab=26.36 E-value=75 Score=25.64 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=22.9
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLD 69 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~ 69 (464)
+.+|+|.+ ..|.+++++..+++.|.+.|++++
T Consensus 3 ~~~IvY~S----~tGnTe~iA~~ia~~l~~~g~~~~ 34 (146)
T PRK07308 3 LAKIVYAS----MTGNTEEIADIVADKLRELGHDVD 34 (146)
T ss_pred eEEEEEEC----CCchHHHHHHHHHHHHHhCCCceE
Confidence 34555543 336899999999999999885444
No 484
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.32 E-value=6.8e+02 Score=25.21 Aligned_cols=90 Identities=10% Similarity=0.052 Sum_probs=48.1
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcE-EEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc--CC----ChhHHHHH
Q 012436 280 PEKAHPLQLEAFSVALRKLDADLPRPR-LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK--NL----LYRDLVKL 352 (464)
Q Consensus 280 ~~K~~~~ll~a~~~l~~~~~~~~p~~~-l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g--~~----~~~~~~~~ 352 (464)
..+.++.+++-++.+.++. ++. +.++++.... +.+...++-+.+.+.+ +-.+.+.. .+ .++++.+.
T Consensus 220 R~rs~e~Vv~Ei~~l~~~~-----gv~~~~~~Dd~f~~-~~~~~~~l~~~l~~~~-~l~i~w~~~~r~~~i~~d~ell~~ 292 (497)
T TIGR02026 220 RHRDPKKFVDEIEWLVRTH-----GVGFFILADEEPTI-NRKKFQEFCEEIIARN-PISVTWGINTRVTDIVRDADILHL 292 (497)
T ss_pred ecCCHHHHHHHHHHHHHHc-----CCCEEEEEeccccc-CHHHHHHHHHHHHhcC-CCCeEEEEecccccccCCHHHHHH
Confidence 4468899999999887664 444 4455443322 2233334433333333 11344432 11 24678889
Q ss_pred HhcCcEEEEcCCCCCCChHHHHHH
Q 012436 353 LGGAVVGIHSMIDEHFGISVVEYM 376 (464)
Q Consensus 353 l~~ad~~v~ps~~e~~~~~~~Ea~ 376 (464)
|++|-+.-+--..|+..-.+++.|
T Consensus 293 l~~aG~~~v~iGiES~~~~~L~~~ 316 (497)
T TIGR02026 293 YRRAGLVHISLGTEAAAQATLDHF 316 (497)
T ss_pred HHHhCCcEEEEccccCCHHHHHHh
Confidence 988765332224566665555554
No 485
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=26.32 E-value=5.8e+02 Score=24.39 Aligned_cols=77 Identities=9% Similarity=-0.044 Sum_probs=46.0
Q ss_pred EEEccCCChhHHHHHHhcCcEEEEc---CCCCCCChHHHHHHHhC------CcEEEeCCCCCccceecccCCcc--ceee
Q 012436 338 VEFYKNLLYRDLVKLLGGAVVGIHS---MIDEHFGISVVEYMAAG------AIPIAHNSAGPKMDIVLEEDGQQ--TGFL 406 (464)
Q Consensus 338 v~~~g~~~~~~~~~~l~~ad~~v~p---s~~e~~~~~~~Ea~a~G------~PvI~~~~~~~~~~~v~~~~~~~--~g~~ 406 (464)
+..+-.+|.+.+.+.++.++-++.. ....|+|-.+.|.++-. .|+.--... ...+.. .. ...+
T Consensus 267 ~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~---d~~~p~---~~~le~~~ 340 (355)
T PTZ00182 267 LRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGA---DTPFPY---AKNLEPAY 340 (355)
T ss_pred EeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCC---CccCCC---ChHHHHHh
Confidence 4455667888889999988866554 23557887788777653 355433221 112211 11 1233
Q ss_pred cCCHHHHHHHHHHH
Q 012436 407 AQNAEEYADAIVKI 420 (464)
Q Consensus 407 ~~~~~~la~~i~~l 420 (464)
.++.+.+.+++.++
T Consensus 341 ~~~~~~i~~~~~~~ 354 (355)
T PTZ00182 341 LPDKEKVVEAAKRV 354 (355)
T ss_pred CCCHHHHHHHHHHh
Confidence 45888888888765
No 486
>PRK12862 malic enzyme; Reviewed
Probab=26.05 E-value=2.7e+02 Score=29.80 Aligned_cols=38 Identities=24% Similarity=0.135 Sum_probs=29.3
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH 385 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 385 (464)
..+.+.+..+|++|-.|....|.--+++.|+ ..|+|-.
T Consensus 253 ~~l~e~~~~~~v~iG~s~~g~~~~~~v~~M~-~~piifa 290 (763)
T PRK12862 253 RTLAEVIEGADVFLGLSAAGVLKPEMVKKMA-PRPLIFA 290 (763)
T ss_pred CCHHHHHcCCCEEEEcCCCCCCCHHHHHHhc-cCCEEEe
Confidence 3677888889999988876566666888887 7777754
No 487
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.04 E-value=3.4e+02 Score=26.79 Aligned_cols=89 Identities=9% Similarity=-0.070 Sum_probs=0.0
Q ss_pred CcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcc-cCCCceeeeeecccccccccCcceehhhhchh
Q 012436 49 GGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVE-LLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (464)
Q Consensus 49 G~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (464)
|....+..+++.|.+.| .++..+.... ......+......... ......++.-..
T Consensus 310 g~~~~~~~la~~L~elG--m~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~v~~~~d-------------------- 365 (435)
T cd01974 310 GDPDFLIGLTSFLLELG--MEPVHVLTGN--GGKRFEKEMQALLDASPYGAGAKVYPGKD-------------------- 365 (435)
T ss_pred cChHHHHHHHHHHHHCC--CEEEEEEeCC--CCHHHHHHHHHHHhhcCCCCCcEEEECCC--------------------
Q ss_pred hhHHHHHHhhhcCCcEEEecccccccchhhhccCceEE
Q 012436 128 SVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVI 165 (464)
Q Consensus 128 ~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v 165 (464)
.......+++.+||+++.++. ...+++..++|.+
T Consensus 366 -~~e~~~~i~~~~pDliiG~s~---~~~~a~~~gip~v 399 (435)
T cd01974 366 -LWHLRSLLFTEPVDLLIGNTY---GKYIARDTDIPLV 399 (435)
T ss_pred -HHHHHHHHhhcCCCEEEECcc---HHHHHHHhCCCEE
No 488
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.03 E-value=3.3e+02 Score=25.15 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=34.3
Q ss_pred hcCcEEEEcCCCCCCChHHHHHH----HhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 354 GGAVVGIHSMIDEHFGISVVEYM----AAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 354 ~~ad~~v~ps~~e~~~~~~~Ea~----a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
..+|+++.- ..+ -+++.|. ..++|++.-+.| .-||+.+ +++++.+++.++++
T Consensus 62 ~~~d~vi~l-GGD---GT~L~aa~~~~~~~~Pilgin~G-------------~lGFl~~~~~~~~~~~l~~i~~ 118 (292)
T PRK03378 62 QQADLAIVV-GGD---GNMLGAARVLARYDIKVIGINRG-------------NLGFLTDLDPDNALQQLSDVLE 118 (292)
T ss_pred CCCCEEEEE-CCc---HHHHHHHHHhcCCCCeEEEEECC-------------CCCcccccCHHHHHHHHHHHHc
Confidence 468887754 222 2444443 236788876643 4577776 88999999999886
No 489
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=26.01 E-value=50 Score=27.87 Aligned_cols=31 Identities=6% Similarity=0.114 Sum_probs=22.2
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDL 68 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~ 68 (464)
||++++..+ ..|-++.++..+++.|.. |+++
T Consensus 1 MkilIvY~S--~~G~T~~iA~~Ia~~l~~-g~~v 31 (177)
T PRK11104 1 MKTLILYSS--RDGQTRKIASYIASELKE-GIQC 31 (177)
T ss_pred CcEEEEEEC--CCChHHHHHHHHHHHhCC-CCeE
Confidence 677776433 346788888899999987 8433
No 490
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=25.97 E-value=2.8e+02 Score=26.07 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=27.1
Q ss_pred HHHHHhcCcEEEE--cCCCCCCChH---HHHHHHhCCcEEEeCCCCC
Q 012436 349 LVKLLGGAVVGIH--SMIDEHFGIS---VVEYMAAGAIPIAHNSAGP 390 (464)
Q Consensus 349 ~~~~l~~ad~~v~--ps~~e~~~~~---~~Ea~a~G~PvI~~~~~~~ 390 (464)
+.+++++||++.. |...|+..+. .++.|--|.-.|-+.-|+.
T Consensus 194 l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~ 240 (324)
T COG1052 194 LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL 240 (324)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccc
Confidence 8888999998654 5556655544 6677766764554444443
No 491
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=25.82 E-value=2.2e+02 Score=26.00 Aligned_cols=71 Identities=20% Similarity=0.090 Sum_probs=42.4
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcE
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIP 382 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pv 382 (464)
+++++..+.+... +..++.+++++.. ... .++.++++.+|+++..+..+...-...+++..|+++
T Consensus 30 ~~~el~aV~dr~~-------~~a~~~a~~~g~~------~~~--~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~V 94 (271)
T PRK13302 30 PGLTLSAVAVRDP-------QRHADFIWGLRRP------PPV--VPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKA 94 (271)
T ss_pred CCeEEEEEECCCH-------HHHHHHHHhcCCC------ccc--CCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcE
Confidence 3677775554321 3344455554421 111 345555788999887765444444457888999999
Q ss_pred EEeCCC
Q 012436 383 IAHNSA 388 (464)
Q Consensus 383 I~~~~~ 388 (464)
++...+
T Consensus 95 i~~s~g 100 (271)
T PRK13302 95 IVLSVG 100 (271)
T ss_pred EEecch
Confidence 986544
No 492
>PRK00865 glutamate racemase; Provisional
Probab=25.74 E-value=2.6e+02 Score=25.31 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=22.4
Q ss_pred HHHHHHhhhcCCcEEEeccccc--ccch-hhhccCceEEEEee
Q 012436 130 YLSWEALCKFTPLYYFDTSGYA--FTYP-LARIFGCRVICYTH 169 (464)
Q Consensus 130 ~~~~~~l~~~~~Dvv~~~~~~~--~~~~-~~~~~~~p~v~~~h 169 (464)
....+.+.+.++|.++..++.+ ..+. +....++|++- ..
T Consensus 57 ~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvig-i~ 98 (261)
T PRK00865 57 LEIVEFLLEYGVKMLVIACNTASAVALPDLRERYDIPVVG-IV 98 (261)
T ss_pred HHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEe-eH
Confidence 3444557778899776333322 2323 44466888877 44
No 493
>PRK00915 2-isopropylmalate synthase; Validated
Probab=25.68 E-value=5.9e+02 Score=25.80 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHhcCCCCcEEEc---cCCChhHHHHHHhcC----c----EEEEcCCCCCCChHH---HHHHHhCCcEE
Q 012436 318 DEERLQSLKDKSIELKVDGNVEFY---KNLLYRDLVKLLGGA----V----VGIHSMIDEHFGISV---VEYMAAGAIPI 383 (464)
Q Consensus 318 ~~~~~~~l~~~~~~~~l~~~v~~~---g~~~~~~~~~~l~~a----d----~~v~ps~~e~~~~~~---~Ea~a~G~PvI 383 (464)
+.++..++-+.+.+.| .+.|.+. |...+.++.+++... + +-+.-..+..+|+.+ ++|+.+|.-.|
T Consensus 147 d~~~l~~~~~~~~~~G-a~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~V 225 (513)
T PRK00915 147 DLDFLCRVVEAAIDAG-ATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQV 225 (513)
T ss_pred CHHHHHHHHHHHHHcC-CCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEE
Confidence 4455555555555555 2344443 555555555554432 1 222222344555553 66777777666
Q ss_pred EeCCCCC
Q 012436 384 AHNSAGP 390 (464)
Q Consensus 384 ~~~~~~~ 390 (464)
-+...|.
T Consensus 226 d~Tv~Gl 232 (513)
T PRK00915 226 ECTINGI 232 (513)
T ss_pred EEEeecc
Confidence 5554444
No 494
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=25.64 E-value=2e+02 Score=26.93 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCC-ceEEEccc
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDL-DCIVYTGD 76 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~-~v~~~~~~ 76 (464)
+|.++++..+.-++. +-+++||+|+-. +...+++..++..+...| . ++.+.++.
T Consensus 139 tQaLaDl~Ti~e~~g---~l~g~~va~vGD-----~~~~rv~~Sl~~~~a~~g--~~~v~~~~P~ 193 (310)
T PRK13814 139 SQALIDLMTIKQHKP---HWNKLCVTIIGD-----IRHSRVANSLMDGLVTMG--VPEIRLVGPS 193 (310)
T ss_pred hHHHHHHHHHHHHhC---CcCCcEEEEECC-----CCCCcHHHHHHHHHHHcC--CCEEEEeCCc
Confidence 689999998877653 345689999822 123688889999999998 6 77777764
No 495
>PRK00211 sulfur relay protein TusC; Validated
Probab=25.51 E-value=1.1e+02 Score=23.74 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=24.9
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
+||+|+....|.|+-..+-..+++-++...++++.+..+.
T Consensus 2 ~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~~~~v~vff~~ 41 (119)
T PRK00211 2 KRIAFVFRQAPHGTASGREGLDALLATSAFTEDIGVFFID 41 (119)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcccCCeeEEEEh
Confidence 5799988777665324444555577777776555544443
No 496
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=25.44 E-value=4e+02 Score=22.70 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=20.8
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCc
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLD 69 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~ 69 (464)
+|+|+|...+.+ ...=...+.+.+.+.+.+++
T Consensus 1 ~ilYlHGF~Ssp--~S~Ka~~l~~~~~~~~~~~~ 32 (187)
T PF05728_consen 1 MILYLHGFNSSP--QSFKAQALKQYFAEHGPDIQ 32 (187)
T ss_pred CeEEecCCCCCC--CCHHHHHHHHHHHHhCCCce
Confidence 588888876644 33334567788888884444
No 497
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.30 E-value=5.4e+02 Score=23.71 Aligned_cols=110 Identities=11% Similarity=0.061 Sum_probs=62.9
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcE-EEccCCChhHHHHHHhcC--c-----EEEEcCCCCCC-ChHHH
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRDLVKLLGGA--V-----VGIHSMIDEHF-GISVV 373 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v-~~~g~~~~~~~~~~l~~a--d-----~~v~ps~~e~~-~~~~~ 373 (464)
|.+..+.+|+.+ ....|.+.-.+.+++.|+.-.. ++....+++++.+.+... | +++.-...+.+ ...++
T Consensus 33 p~Laii~vg~d~--as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~ 110 (285)
T PRK14189 33 PGLAVILVGDNP--ASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVI 110 (285)
T ss_pred CeEEEEEeCCCc--hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHH
Confidence 666777777655 4567888889999999986443 445567788888888753 3 45543333332 24467
Q ss_pred HHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHH
Q 012436 374 EYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVK 419 (464)
Q Consensus 374 Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~ 419 (464)
+++.--+ |+.|..+.-......+..++...++....+.++.
T Consensus 111 ~~I~p~K-----DVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~ 151 (285)
T PRK14189 111 EAIAPEK-----DVDGFHVANAGALMTGQPLFRPCTPYGVMKMLES 151 (285)
T ss_pred hhcCccc-----CcccCChhhhhHhhCCCCCCcCCCHHHHHHHHHH
Confidence 7766655 4444422111000002344433376666665554
No 498
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=25.03 E-value=4.7e+02 Score=23.22 Aligned_cols=55 Identities=7% Similarity=-0.061 Sum_probs=35.1
Q ss_pred CCcEEEccCC-Ch---hHHHHHHhcCcEEEEc-CCCCCCChH-HHHHHHhCCcEEEeCCCC
Q 012436 335 DGNVEFYKNL-LY---RDLVKLLGGAVVGIHS-MIDEHFGIS-VVEYMAAGAIPIAHNSAG 389 (464)
Q Consensus 335 ~~~v~~~g~~-~~---~~~~~~l~~ad~~v~p-s~~e~~~~~-~~Ea~a~G~PvI~~~~~~ 389 (464)
.++|.+.|.. |. +...+.++.||++|.- +...-+|.. +.+....|.|+|.-+.+.
T Consensus 151 rP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~ 211 (235)
T cd01408 151 KPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREP 211 (235)
T ss_pred cCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCC
Confidence 4678888764 54 3444667889987653 333434433 566777899999877553
No 499
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=24.93 E-value=4.1e+02 Score=24.10 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=27.5
Q ss_pred hHHHHHHhhhcCCcEEEe----cccccccch--hhhccCceEEEEee
Q 012436 129 VYLSWEALCKFTPLYYFD----TSGYAFTYP--LARIFGCRVICYTH 169 (464)
Q Consensus 129 ~~~~~~~l~~~~~Dvv~~----~~~~~~~~~--~~~~~~~p~v~~~h 169 (464)
...+...+++.++|+|++ ..+.....+ ++.++|.|.+.+.-
T Consensus 100 a~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 100 AKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 334455678899999884 222233333 78899999988776
No 500
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=24.69 E-value=3.4e+02 Score=25.26 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=6.9
Q ss_pred HHHHHHHhcCCC
Q 012436 324 SLKDKSIELKVD 335 (464)
Q Consensus 324 ~l~~~~~~~~l~ 335 (464)
.+++.+.+.|++
T Consensus 47 ~v~~~a~~~~Ip 58 (309)
T PRK00005 47 PVKQLALEHGIP 58 (309)
T ss_pred HHHHHHHHcCCC
Confidence 455666666554
Done!