Query 012436
Match_columns 464
No_of_seqs 320 out of 2546
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 09:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 100.0 6.9E-44 2.4E-48 345.7 34.7 358 32-462 2-383 (394)
2 3c48_A Predicted glycosyltrans 100.0 1.1E-43 3.8E-48 349.3 34.9 389 30-462 16-429 (438)
3 2r60_A Glycosyl transferase, g 100.0 1.6E-43 5.6E-48 353.7 30.6 398 33-462 6-463 (499)
4 3fro_A GLGA glycogen synthase; 100.0 4.4E-43 1.5E-47 344.9 32.1 396 33-462 1-434 (439)
5 2jjm_A Glycosyl transferase, g 100.0 4.5E-42 1.5E-46 333.0 28.2 361 35-462 14-389 (394)
6 2gek_A Phosphatidylinositol ma 100.0 2.3E-41 7.7E-46 329.4 30.0 362 30-462 16-387 (406)
7 3s28_A Sucrose synthase 1; gly 100.0 1.8E-41 6.1E-46 347.9 30.5 394 34-458 278-769 (816)
8 3oy2_A Glycosyltransferase B73 100.0 4.2E-41 1.4E-45 328.2 29.7 356 35-462 1-394 (413)
9 2x6q_A Trehalose-synthase TRET 100.0 3.2E-41 1.1E-45 329.4 27.9 356 32-459 38-415 (416)
10 2iw1_A Lipopolysaccharide core 100.0 1.6E-41 5.3E-46 326.8 22.8 353 35-459 1-372 (374)
11 1rzu_A Glycogen synthase 1; gl 100.0 4.9E-40 1.7E-44 327.4 28.9 393 35-462 1-479 (485)
12 2qzs_A Glycogen synthase; glyc 100.0 4.1E-39 1.4E-43 320.8 33.2 393 35-462 1-480 (485)
13 2iuy_A Avigt4, glycosyltransfe 100.0 2.1E-38 7.1E-43 301.2 29.0 313 33-462 2-339 (342)
14 3vue_A GBSS-I, granule-bound s 100.0 5.4E-38 1.8E-42 312.7 27.8 228 214-459 234-512 (536)
15 2x0d_A WSAF; GT4 family, trans 100.0 1.7E-35 5.8E-40 286.4 17.7 351 28-460 40-411 (413)
16 2hy7_A Glucuronosyltransferase 100.0 2.4E-34 8.3E-39 278.6 15.6 244 140-459 124-380 (406)
17 2vsy_A XCC0866; transferase, g 100.0 2.2E-31 7.6E-36 270.2 29.6 330 31-461 202-562 (568)
18 1f0k_A MURG, UDP-N-acetylgluco 100.0 6.2E-32 2.1E-36 258.8 20.9 337 34-462 6-361 (364)
19 3beo_A UDP-N-acetylglucosamine 100.0 8.4E-31 2.9E-35 252.0 20.3 276 129-456 84-374 (375)
20 1vgv_A UDP-N-acetylglucosamine 100.0 1.2E-30 4.3E-35 251.6 15.4 355 35-462 1-380 (384)
21 1uqt_A Alpha, alpha-trehalose- 100.0 3.1E-28 1.1E-32 238.3 26.8 284 140-458 123-454 (482)
22 3nb0_A Glycogen [starch] synth 100.0 2.7E-28 9.3E-33 239.1 26.1 317 139-462 180-637 (725)
23 3qhp_A Type 1 capsular polysac 100.0 6.6E-28 2.3E-32 203.8 17.0 163 269-450 2-166 (166)
24 3t5t_A Putative glycosyltransf 100.0 2.9E-26 9.9E-31 221.4 28.6 286 140-460 149-475 (496)
25 2xci_A KDO-transferase, 3-deox 99.9 1.8E-26 6E-31 220.6 23.1 204 215-443 147-365 (374)
26 2bfw_A GLGA glycogen synthase; 99.9 2E-26 7E-31 201.0 19.0 179 249-443 2-200 (200)
27 1v4v_A UDP-N-acetylglucosamine 99.9 3.3E-26 1.1E-30 219.9 20.9 275 129-460 80-366 (376)
28 2f9f_A First mannosyl transfer 99.9 2E-25 6.7E-30 190.5 14.0 151 266-435 20-174 (177)
29 3rhz_A GTF3, nucleotide sugar 99.9 1.9E-22 6.5E-27 188.2 23.8 196 214-451 126-329 (339)
30 3otg_A CALG1; calicheamicin, T 99.9 6.7E-22 2.3E-26 192.3 24.3 355 29-457 15-409 (412)
31 3s2u_A UDP-N-acetylglucosamine 99.9 8.7E-22 3E-26 187.5 24.4 340 35-458 3-358 (365)
32 3ot5_A UDP-N-acetylglucosamine 99.9 1E-21 3.4E-26 189.1 19.3 356 30-460 23-393 (403)
33 3dzc_A UDP-N-acetylglucosamine 99.9 1.1E-21 3.6E-26 188.8 19.0 345 33-455 24-394 (396)
34 2iyf_A OLED, oleandomycin glyc 99.8 1.3E-19 4.6E-24 177.0 22.6 367 34-458 7-401 (430)
35 4fzr_A SSFS6; structural genom 99.8 3.2E-20 1.1E-24 179.5 13.7 348 27-452 8-396 (398)
36 3tsa_A SPNG, NDP-rhamnosyltran 99.8 1.4E-18 4.7E-23 167.6 16.8 161 268-456 218-388 (391)
37 3oti_A CALG3; calicheamicin, T 99.8 2.4E-18 8.2E-23 166.3 15.5 155 267-455 231-396 (398)
38 3ia7_A CALG4; glycosysltransfe 99.8 4.8E-17 1.6E-21 157.4 21.6 366 34-457 4-399 (402)
39 3rsc_A CALG2; TDP, enediyne, s 99.7 1.3E-16 4.6E-21 155.0 22.0 366 31-457 17-414 (415)
40 2p6p_A Glycosyl transferase; X 99.7 4.1E-16 1.4E-20 149.9 22.0 340 35-456 1-379 (384)
41 4hwg_A UDP-N-acetylglucosamine 99.7 1.5E-16 5.1E-21 151.6 17.5 273 127-455 81-374 (385)
42 3q3e_A HMW1C-like glycosyltran 99.7 2.7E-15 9.2E-20 147.1 21.5 267 130-459 339-624 (631)
43 2yjn_A ERYCIII, glycosyltransf 99.7 6.2E-15 2.1E-19 144.3 20.6 157 268-456 267-435 (441)
44 2iya_A OLEI, oleandomycin glyc 99.6 2.8E-13 9.6E-18 131.8 27.6 375 31-455 9-420 (424)
45 4amg_A Snogd; transferase, pol 99.5 3.6E-13 1.2E-17 130.0 16.3 159 267-454 236-398 (400)
46 4gyw_A UDP-N-acetylglucosamine 99.4 3.8E-11 1.3E-15 123.5 26.4 169 279-460 531-707 (723)
47 1iir_A Glycosyltransferase GTF 99.4 5.8E-11 2E-15 115.0 23.3 153 269-460 239-400 (415)
48 3h4t_A Glycosyltransferase GTF 99.4 7.8E-11 2.7E-15 113.6 21.4 153 268-455 221-381 (404)
49 2o6l_A UDP-glucuronosyltransfe 99.2 2.6E-11 9E-16 101.9 9.8 130 268-430 21-160 (170)
50 1rrv_A Glycosyltransferase GTF 99.2 6.4E-10 2.2E-14 107.7 20.0 133 269-436 238-381 (416)
51 1l5w_A Maltodextrin phosphoryl 99.1 3.3E-09 1.1E-13 106.5 20.5 240 214-460 406-732 (796)
52 2gj4_A Glycogen phosphorylase, 98.8 5.5E-07 1.9E-11 91.0 23.2 198 214-413 430-707 (824)
53 2c4m_A Glycogen phosphorylase; 98.8 7E-08 2.4E-12 97.0 16.6 241 213-460 394-721 (796)
54 2c1x_A UDP-glucose flavonoid 3 98.7 1.3E-05 4.4E-10 78.0 27.9 93 335-439 324-426 (456)
55 3hbm_A UDP-sugar hydrolase; PS 98.7 2.8E-07 9.7E-12 83.0 13.4 94 270-387 159-252 (282)
56 3hbf_A Flavonoid 3-O-glucosylt 98.6 8.4E-05 2.9E-09 71.8 30.5 375 29-439 8-428 (454)
57 2pq6_A UDP-glucuronosyl/UDP-gl 98.6 4.3E-05 1.5E-09 75.0 27.8 148 268-439 295-453 (482)
58 2acv_A Triterpene UDP-glucosyl 98.5 0.0005 1.7E-08 67.0 32.6 133 268-422 276-424 (463)
59 2vch_A Hydroquinone glucosyltr 98.3 0.0013 4.6E-08 64.2 29.5 92 338-439 341-443 (480)
60 1psw_A ADP-heptose LPS heptosy 98.1 0.00014 4.8E-09 68.1 18.1 100 269-385 181-286 (348)
61 2gt1_A Lipopolysaccharide hept 98.1 0.00047 1.6E-08 63.8 21.3 135 268-422 178-321 (326)
62 3l7i_A Teichoic acid biosynthe 98.1 0.00011 3.7E-09 76.1 17.8 208 219-456 476-715 (729)
63 3tov_A Glycosyl transferase fa 98.0 0.00044 1.5E-08 64.6 18.7 100 269-386 186-287 (349)
64 2jzc_A UDP-N-acetylglucosamine 96.6 0.0022 7.7E-08 55.1 5.0 74 337-420 115-196 (224)
65 1ygp_A Yeast glycogen phosphor 96.3 0.055 1.9E-06 54.9 13.5 145 267-415 598-768 (879)
66 3lkv_A Uncharacterized conserv 90.2 9.9 0.00034 33.9 17.6 157 216-386 64-227 (302)
67 1xv5_A AGT, DNA alpha-glucosyl 87.1 12 0.0004 31.0 32.6 163 272-452 200-396 (401)
68 4g65_A TRK system potassium up 82.2 36 0.0012 32.5 17.4 107 271-388 211-334 (461)
69 3ty2_A 5'-nucleotidase SURE; s 80.7 4.9 0.00017 34.9 7.4 43 29-78 6-48 (261)
70 3miz_A Putative transcriptiona 80.6 26 0.0009 30.8 12.9 45 28-75 7-52 (301)
71 1k68_A Phytochrome response re 80.2 15 0.00053 27.5 9.9 109 304-422 2-130 (140)
72 4fyk_A Deoxyribonucleoside 5'- 78.4 10 0.00035 29.9 8.0 69 350-422 63-141 (152)
73 3heb_A Response regulator rece 77.3 20 0.0007 27.5 9.9 109 304-422 4-134 (152)
74 3kcq_A Phosphoribosylglycinami 76.1 15 0.00051 31.0 8.9 104 31-169 5-111 (215)
75 1rcu_A Conserved hypothetical 74.2 2.5 8.6E-05 35.1 3.6 71 348-420 111-192 (195)
76 3q0i_A Methionyl-tRNA formyltr 73.7 18 0.00063 32.5 9.5 32 32-73 5-36 (318)
77 3egc_A Putative ribose operon 73.2 30 0.001 30.2 10.9 44 29-75 3-46 (291)
78 3auf_A Glycinamide ribonucleot 72.7 21 0.00071 30.4 9.1 108 32-169 20-130 (229)
79 3q98_A Transcarbamylase; rossm 72.1 18 0.0006 33.7 9.1 63 13-77 170-232 (399)
80 2f62_A Nucleoside 2-deoxyribos 71.6 36 0.0012 27.0 11.4 37 350-386 62-105 (161)
81 1zh8_A Oxidoreductase; TM0312, 71.1 12 0.00041 34.1 7.9 43 26-75 10-52 (340)
82 3ilh_A Two component response 70.6 27 0.00093 26.3 9.0 112 304-422 9-138 (146)
83 3rfo_A Methionyl-tRNA formyltr 70.4 22 0.00074 32.0 9.1 32 32-73 2-33 (317)
84 1i3c_A Response regulator RCP1 69.4 35 0.0012 26.1 9.4 109 304-422 8-136 (149)
85 2bw0_A 10-FTHFDH, 10-formyltet 69.3 23 0.00078 32.1 9.1 30 30-67 18-47 (329)
86 2ywr_A Phosphoribosylglycinami 68.7 27 0.00093 29.4 8.9 34 35-74 2-35 (216)
87 1k66_A Phytochrome response re 68.5 34 0.0012 25.8 9.2 109 304-422 6-137 (149)
88 3jte_A Response regulator rece 67.3 37 0.0013 25.5 9.1 107 304-422 3-122 (143)
89 1fmt_A Methionyl-tRNA FMet for 67.2 28 0.00096 31.3 9.2 30 33-72 2-31 (314)
90 1fy2_A Aspartyl dipeptidase; s 67.0 31 0.0011 29.3 9.1 94 284-388 17-122 (229)
91 4ds3_A Phosphoribosylglycinami 67.0 28 0.00095 29.1 8.5 39 31-75 4-42 (209)
92 3tqr_A Phosphoribosylglycinami 66.7 46 0.0016 27.9 9.9 107 33-169 4-112 (215)
93 3o74_A Fructose transport syst 66.2 62 0.0021 27.6 11.5 39 34-75 2-40 (272)
94 4had_A Probable oxidoreductase 65.7 11 0.00038 34.4 6.4 94 268-386 22-117 (350)
95 3tqq_A Methionyl-tRNA formyltr 64.6 33 0.0011 30.8 9.1 30 34-73 2-31 (314)
96 2lpm_A Two-component response 64.1 14 0.0005 27.8 5.7 29 32-67 6-34 (123)
97 3h1g_A Chemotaxis protein CHEY 63.4 42 0.0014 24.7 8.9 108 304-422 5-126 (129)
98 2yfk_A Aspartate/ornithine car 63.4 35 0.0012 32.0 9.2 63 13-77 167-229 (418)
99 3da8_A Probable 5'-phosphoribo 63.2 25 0.00085 29.6 7.5 88 30-146 8-95 (215)
100 2l2q_A PTS system, cellobiose- 62.6 42 0.0014 24.5 9.2 77 304-386 4-83 (109)
101 1ydg_A Trp repressor binding p 61.9 4.2 0.00014 34.2 2.6 40 30-71 2-41 (211)
102 3grc_A Sensor protein, kinase; 61.9 47 0.0016 24.8 10.0 107 304-422 6-126 (140)
103 3uuw_A Putative oxidoreductase 61.1 11 0.00039 33.6 5.5 68 303-386 30-97 (308)
104 3q2i_A Dehydrogenase; rossmann 60.2 43 0.0015 30.5 9.4 40 27-74 6-45 (354)
105 2i6u_A Otcase, ornithine carba 60.1 62 0.0021 28.9 9.9 61 13-84 130-190 (307)
106 4e7p_A Response regulator; DNA 60.1 45 0.0016 25.4 8.4 109 304-422 20-139 (150)
107 2zay_A Response regulator rece 60.0 23 0.0008 26.9 6.7 107 304-422 8-127 (147)
108 4egb_A DTDP-glucose 4,6-dehydr 60.0 29 0.00098 31.3 8.2 37 33-76 23-59 (346)
109 3kht_A Response regulator; PSI 59.7 47 0.0016 25.0 8.4 109 304-422 5-127 (144)
110 2d1p_A TUSD, hypothetical UPF0 59.6 7.8 0.00027 30.1 3.5 41 32-72 10-51 (140)
111 4f3y_A DHPR, dihydrodipicolina 59.4 5.8 0.0002 34.9 3.1 43 347-389 65-107 (272)
112 2phj_A 5'-nucleotidase SURE; S 59.1 48 0.0016 28.6 8.7 38 34-78 1-38 (251)
113 1rtt_A Conserved hypothetical 58.9 2.9 9.9E-05 34.6 1.0 42 29-73 1-42 (193)
114 1e5d_A Rubredoxin\:oxygen oxid 58.7 99 0.0034 28.5 11.9 99 283-385 235-342 (402)
115 3hzh_A Chemotaxis response reg 58.4 52 0.0018 25.3 8.6 64 356-422 84-156 (157)
116 2qvg_A Two component response 58.2 56 0.0019 24.4 10.2 112 304-422 7-134 (143)
117 2hy5_A Putative sulfurtransfer 57.6 8.3 0.00028 29.5 3.4 34 35-68 1-34 (130)
118 3en0_A Cyanophycinase; serine 57.5 58 0.002 28.8 9.3 111 271-388 28-154 (291)
119 3e9m_A Oxidoreductase, GFO/IDH 57.5 52 0.0018 29.6 9.4 92 269-386 5-98 (330)
120 3hly_A Flavodoxin-like domain; 57.5 6.9 0.00024 31.2 3.0 36 35-74 1-36 (161)
121 2qsj_A DNA-binding response re 57.2 62 0.0021 24.6 9.2 108 304-422 3-123 (154)
122 3ijp_A DHPR, dihydrodipicolina 56.1 7.3 0.00025 34.5 3.2 43 347-389 80-122 (288)
123 4a8t_A Putrescine carbamoyltra 55.9 44 0.0015 30.3 8.3 65 13-86 154-218 (339)
124 3gbv_A Putative LACI-family tr 55.3 1E+02 0.0035 26.7 11.9 68 273-356 177-244 (304)
125 3av3_A Phosphoribosylglycinami 55.1 69 0.0024 26.7 9.0 106 35-169 4-111 (212)
126 4gi5_A Quinone reductase; prot 55.0 6.7 0.00023 34.7 2.8 41 32-72 20-60 (280)
127 1jg7_A BGT, DNA beta-glucosylt 54.9 92 0.0032 26.0 15.7 200 215-439 124-331 (351)
128 4a8p_A Putrescine carbamoyltra 54.7 47 0.0016 30.3 8.3 65 13-86 132-196 (355)
129 3cg4_A Response regulator rece 54.1 65 0.0022 24.0 11.3 107 304-422 7-126 (142)
130 3eul_A Possible nitrate/nitrit 53.9 59 0.002 24.7 8.1 109 304-422 15-134 (152)
131 1ydw_A AX110P-like protein; st 53.8 54 0.0018 29.9 8.9 95 269-386 6-102 (362)
132 4gqa_A NAD binding oxidoreduct 53.6 27 0.00092 32.7 6.9 33 134-166 90-125 (412)
133 3gd5_A Otcase, ornithine carba 53.3 47 0.0016 29.8 8.0 62 13-86 139-200 (323)
134 2qzj_A Two-component response 53.3 50 0.0017 24.7 7.4 107 304-422 4-120 (136)
135 3ehd_A Uncharacterized conserv 52.2 27 0.00092 27.8 5.6 71 351-421 65-161 (162)
136 1qkk_A DCTD, C4-dicarboxylate 52.1 76 0.0026 24.1 9.7 107 304-422 3-120 (155)
137 1jkx_A GART;, phosphoribosylgl 51.1 1E+02 0.0036 25.6 9.5 106 35-169 1-108 (212)
138 3h5i_A Response regulator/sens 51.1 74 0.0025 23.7 11.8 107 304-422 5-123 (140)
139 1pvv_A Otcase, ornithine carba 50.7 54 0.0018 29.4 7.9 60 13-84 137-196 (315)
140 1e2b_A Enzyme IIB-cellobiose; 50.7 13 0.00045 27.2 3.3 52 307-363 7-58 (106)
141 4fb5_A Probable oxidoreductase 50.2 18 0.00062 33.4 5.1 100 268-386 24-125 (393)
142 3dbi_A Sugar-binding transcrip 50.1 87 0.003 27.9 9.7 50 285-344 227-278 (338)
143 3qvl_A Putative hydantoin race 50.1 27 0.00091 30.1 5.7 40 34-77 1-40 (245)
144 4ep1_A Otcase, ornithine carba 49.9 55 0.0019 29.6 7.9 62 13-86 161-222 (340)
145 2zki_A 199AA long hypothetical 49.8 8.3 0.00028 31.9 2.4 36 33-71 3-38 (199)
146 2ef0_A Ornithine carbamoyltran 49.7 55 0.0019 29.1 7.8 53 13-77 136-188 (301)
147 3l4e_A Uncharacterized peptida 49.6 20 0.00069 29.9 4.7 82 304-388 27-122 (206)
148 3db2_A Putative NADPH-dependen 49.6 78 0.0027 28.7 9.3 35 31-74 2-36 (354)
149 3p9x_A Phosphoribosylglycinami 49.0 96 0.0033 25.9 8.8 107 34-169 2-110 (211)
150 2q62_A ARSH; alpha/beta, flavo 48.8 11 0.00036 32.7 3.0 47 26-74 26-72 (247)
151 3gt7_A Sensor protein; structu 48.7 87 0.003 23.9 9.4 107 304-422 7-126 (154)
152 3lua_A Response regulator rece 48.7 37 0.0013 25.4 6.0 107 304-422 4-126 (140)
153 2iz6_A Molybdenum cofactor car 48.1 8.5 0.00029 31.3 2.1 67 353-422 105-173 (176)
154 1l5x_A SurviVal protein E; str 47.9 1E+02 0.0035 27.0 9.1 112 35-169 1-127 (280)
155 2nzw_A Alpha1,3-fucosyltransfe 47.9 1.4E+02 0.0049 27.3 10.4 80 347-432 223-308 (371)
156 1t35_A Hypothetical protein YV 47.8 21 0.00071 29.4 4.5 71 348-420 90-179 (191)
157 2hy5_B Intracellular sulfur ox 47.7 15 0.00051 28.4 3.4 40 34-73 4-44 (136)
158 2v4n_A Multifunctional protein 47.6 76 0.0026 27.4 8.1 38 34-78 1-38 (254)
159 2i6u_A Otcase, ornithine carba 47.5 91 0.0031 27.8 8.9 80 268-364 147-226 (307)
160 1rpn_A GDP-mannose 4,6-dehydra 47.4 70 0.0024 28.5 8.6 43 25-76 5-47 (335)
161 3to5_A CHEY homolog; alpha(5)b 47.0 92 0.0031 23.6 9.2 111 304-422 12-132 (134)
162 2qxy_A Response regulator; reg 46.9 86 0.003 23.3 8.1 107 304-422 4-120 (142)
163 4fb5_A Probable oxidoreductase 46.6 46 0.0016 30.6 7.4 33 134-166 88-123 (393)
164 2uyg_A 3-dehydroquinate dehydr 46.4 1E+02 0.0035 24.0 7.7 98 320-422 28-140 (149)
165 4had_A Probable oxidoreductase 46.3 56 0.0019 29.6 7.8 97 27-166 16-115 (350)
166 3tpf_A Otcase, ornithine carba 45.9 73 0.0025 28.4 8.0 53 13-77 127-180 (307)
167 1gqo_A Dehydroquinase; dehydra 45.9 66 0.0022 24.8 6.5 98 320-422 29-140 (143)
168 3sds_A Ornithine carbamoyltran 45.9 70 0.0024 29.1 8.0 65 13-86 157-231 (353)
169 3u3x_A Oxidoreductase; structu 45.7 68 0.0023 29.3 8.2 93 268-386 25-119 (361)
170 3lwz_A 3-dehydroquinate dehydr 45.5 55 0.0019 25.6 6.1 96 322-422 38-147 (153)
171 1eiw_A Hypothetical protein MT 45.5 42 0.0014 24.7 5.4 70 351-422 34-109 (111)
172 2wqk_A 5'-nucleotidase SURE; S 45.4 1E+02 0.0035 26.5 8.7 37 35-78 2-38 (251)
173 3rc1_A Sugar 3-ketoreductase; 45.0 23 0.00077 32.4 4.8 93 268-386 26-120 (350)
174 3gd5_A Otcase, ornithine carba 45.0 1.2E+02 0.0042 27.1 9.4 79 268-364 156-234 (323)
175 3rc1_A Sugar 3-ketoreductase; 44.8 54 0.0019 29.8 7.4 33 134-166 83-118 (350)
176 2j48_A Two-component sensor ki 44.8 79 0.0027 22.2 8.0 104 306-422 3-117 (119)
177 3lzd_A DPH2; diphthamide biosy 44.8 12 0.00041 34.5 2.7 58 304-363 265-322 (378)
178 1j9j_A Stationary phase surviV 44.7 96 0.0033 26.6 8.3 37 35-78 1-37 (247)
179 1oth_A Protein (ornithine tran 44.7 58 0.002 29.3 7.2 61 13-85 137-197 (321)
180 1vs1_A 3-deoxy-7-phosphoheptul 44.6 1.6E+02 0.0055 25.7 12.2 104 275-388 42-154 (276)
181 3evn_A Oxidoreductase, GFO/IDH 44.6 43 0.0015 30.1 6.6 91 270-386 6-98 (329)
182 4dad_A Putative pilus assembly 44.5 52 0.0018 24.8 6.3 65 355-422 67-140 (146)
183 2w37_A Ornithine carbamoyltran 44.4 1.1E+02 0.0038 27.9 9.0 80 268-364 175-254 (359)
184 3l6u_A ABC-type sugar transpor 44.3 65 0.0022 27.9 7.7 45 28-75 2-46 (293)
185 1vlv_A Otcase, ornithine carba 44.3 68 0.0023 28.8 7.6 55 13-78 149-203 (325)
186 2hna_A Protein MIOC, flavodoxi 43.9 20 0.0007 27.7 3.8 35 35-73 2-36 (147)
187 1pvv_A Otcase, ornithine carba 43.7 1.1E+02 0.0037 27.4 8.8 79 268-364 154-232 (315)
188 3f6r_A Flavodoxin; FMN binding 43.5 9.5 0.00032 29.7 1.7 36 35-74 2-37 (148)
189 3moi_A Probable dehydrogenase; 43.2 33 0.0011 31.8 5.7 68 303-386 26-95 (387)
190 2a5l_A Trp repressor binding p 42.8 13 0.00043 30.7 2.5 37 34-74 5-41 (200)
191 2r25_B Osmosensing histidine p 42.6 99 0.0034 22.7 9.7 107 305-422 3-126 (133)
192 3lkv_A Uncharacterized conserv 42.2 1.6E+02 0.0054 25.8 9.9 36 134-169 63-98 (302)
193 1zco_A 2-dehydro-3-deoxyphosph 42.2 1.7E+02 0.0058 25.3 13.4 102 277-388 29-139 (262)
194 3e61_A Putative transcriptiona 41.9 49 0.0017 28.4 6.4 45 28-75 2-46 (277)
195 1qv9_A F420-dependent methylen 41.8 30 0.001 29.2 4.4 94 34-172 3-102 (283)
196 3hdg_A Uncharacterized protein 41.7 1E+02 0.0035 22.6 9.0 107 304-422 7-124 (137)
197 2ixd_A LMBE-related protein; h 41.7 1.1E+02 0.0038 26.0 8.4 98 33-148 2-105 (242)
198 3cnb_A DNA-binding response re 41.5 1E+02 0.0036 22.7 9.5 108 304-422 8-129 (143)
199 2ixa_A Alpha-N-acetylgalactosa 41.4 1.1E+02 0.0037 28.9 9.1 78 303-386 43-122 (444)
200 1tlt_A Putative oxidoreductase 40.8 55 0.0019 29.2 6.6 68 303-386 29-96 (319)
201 1dxh_A Ornithine carbamoyltran 40.7 87 0.003 28.3 7.7 62 13-84 136-197 (335)
202 4b4o_A Epimerase family protei 40.5 26 0.00089 30.9 4.4 34 35-77 1-34 (298)
203 3s2y_A Chromate reductase; ura 46.6 5.9 0.0002 33.0 0.0 42 29-71 1-42 (199)
204 1uqr_A 3-dehydroquinate dehydr 40.4 65 0.0022 25.2 5.8 97 320-421 30-140 (154)
205 1duv_G Octase-1, ornithine tra 40.2 1.1E+02 0.0037 27.7 8.2 80 268-364 154-233 (333)
206 1jx7_A Hypothetical protein YC 39.8 24 0.00082 25.9 3.4 37 35-71 2-40 (117)
207 1vr6_A Phospho-2-dehydro-3-deo 39.8 2.2E+02 0.0074 25.9 11.6 107 272-388 107-222 (350)
208 1vlv_A Otcase, ornithine carba 39.8 1.1E+02 0.0038 27.4 8.3 80 268-364 166-245 (325)
209 3grf_A Ornithine carbamoyltran 39.8 83 0.0028 28.3 7.4 57 13-77 136-196 (328)
210 4ep1_A Otcase, ornithine carba 39.8 1.4E+02 0.0047 27.0 8.8 121 220-364 124-256 (340)
211 2ohh_A Type A flavoprotein FPR 39.7 1.6E+02 0.0053 27.1 9.9 97 284-385 240-349 (404)
212 4ekn_B Aspartate carbamoyltran 39.6 92 0.0031 27.7 7.6 65 13-87 133-198 (306)
213 1meo_A Phosophoribosylglycinam 39.5 1.6E+02 0.0055 24.4 8.7 36 132-169 71-108 (209)
214 2w37_A Ornithine carbamoyltran 39.4 88 0.003 28.5 7.6 61 13-84 158-218 (359)
215 3qua_A Putative uncharacterize 39.3 50 0.0017 27.3 5.5 47 347-395 109-163 (199)
216 3kip_A 3-dehydroquinase, type 39.2 1.4E+02 0.0049 23.6 8.9 82 338-422 61-157 (167)
217 1duv_G Octase-1, ornithine tra 39.0 92 0.0032 28.1 7.6 61 13-84 135-197 (333)
218 3o1i_D Periplasmic protein TOR 38.9 88 0.003 27.1 7.7 65 282-358 177-241 (304)
219 1dbw_A Transcriptional regulat 38.9 1.1E+02 0.0037 22.1 10.0 107 304-422 3-120 (126)
220 3s40_A Diacylglycerol kinase; 38.4 38 0.0013 30.1 5.1 45 28-74 2-46 (304)
221 3dty_A Oxidoreductase, GFO/IDH 38.1 1.2E+02 0.0041 28.0 8.7 70 303-385 38-115 (398)
222 4b4k_A N5-carboxyaminoimidazol 38.1 85 0.0029 25.3 6.3 31 136-166 73-105 (181)
223 3i6i_A Putative leucoanthocyan 38.0 1.2E+02 0.004 27.2 8.5 35 34-77 10-44 (346)
224 2vzf_A NADH-dependent FMN redu 37.8 15 0.00053 30.2 2.2 36 34-69 2-38 (197)
225 2gkg_A Response regulator homo 37.8 1.1E+02 0.0037 21.9 8.4 108 305-422 6-124 (127)
226 3r0j_A Possible two component 37.8 1.8E+02 0.0062 24.4 10.3 110 304-422 23-140 (250)
227 3kcn_A Adenylate cyclase homol 37.7 1.3E+02 0.0044 22.7 9.8 106 304-422 4-122 (151)
228 3m2t_A Probable dehydrogenase; 37.6 28 0.00095 31.9 4.1 69 303-386 29-99 (359)
229 3d6n_B Aspartate carbamoyltran 37.5 67 0.0023 28.4 6.3 55 13-77 128-182 (291)
230 1ml4_A Aspartate transcarbamoy 37.5 96 0.0033 27.6 7.4 64 13-86 137-200 (308)
231 3csu_A Protein (aspartate carb 37.3 1E+02 0.0035 27.5 7.5 56 13-78 136-192 (310)
232 2qr3_A Two-component system re 37.2 1.2E+02 0.0042 22.2 8.1 107 304-422 3-125 (140)
233 1f4p_A Flavodoxin; electron tr 37.2 14 0.00047 28.7 1.7 33 35-69 1-33 (147)
234 3gl9_A Response regulator; bet 37.1 1.2E+02 0.0039 21.9 9.1 105 306-422 4-121 (122)
235 2bln_A Protein YFBG; transfera 37.0 1.3E+02 0.0043 26.8 8.2 95 35-165 1-101 (305)
236 1uan_A Hypothetical protein TT 37.0 1.3E+02 0.0045 25.2 8.0 41 34-77 1-41 (227)
237 2l8s_A Integrin alpha-1; trans 36.8 24 0.00082 22.1 2.3 20 3-22 4-23 (54)
238 3tem_A Ribosyldihydronicotinam 36.7 19 0.00065 30.6 2.6 39 34-72 1-39 (228)
239 3ec7_A Putative dehydrogenase; 36.7 1.5E+02 0.0052 26.8 9.1 33 134-166 81-116 (357)
240 1h6d_A Precursor form of gluco 36.7 29 0.00098 32.8 4.2 98 267-386 81-181 (433)
241 3m9w_A D-xylose-binding peripl 36.6 1.8E+02 0.0061 25.3 9.5 39 34-75 2-40 (313)
242 3geb_A EYES absent homolog 2; 36.1 1.1E+02 0.0037 26.3 7.0 54 288-357 217-270 (274)
243 3mm4_A Histidine kinase homolo 36.1 1.1E+02 0.0038 24.9 7.5 65 355-422 119-195 (206)
244 1xvl_A Mn transporter, MNTC pr 35.9 81 0.0028 28.3 6.8 94 343-439 82-183 (321)
245 1s2d_A Purine trans deoxyribos 35.9 1.6E+02 0.0056 23.3 8.2 36 351-386 77-116 (167)
246 3hv2_A Response regulator/HD d 35.8 1.4E+02 0.0048 22.5 9.7 107 304-422 14-132 (153)
247 1ykg_A SIR-FP, sulfite reducta 35.8 16 0.00055 29.2 1.9 35 34-70 9-43 (167)
248 2pln_A HP1043, response regula 35.8 1.3E+02 0.0044 22.1 8.8 104 304-422 18-132 (137)
249 1dxh_A Ornithine carbamoyltran 35.8 1E+02 0.0035 27.8 7.4 80 268-364 154-233 (335)
250 3n53_A Response regulator rece 35.5 1.3E+02 0.0045 22.1 10.6 109 304-422 3-121 (140)
251 4f2g_A Otcase 1, ornithine car 35.4 89 0.003 27.9 6.8 53 13-77 136-188 (309)
252 1jbe_A Chemotaxis protein CHEY 35.3 1.2E+02 0.0042 21.8 9.8 108 304-422 4-124 (128)
253 3enk_A UDP-glucose 4-epimerase 35.3 1.7E+02 0.0059 25.8 9.2 36 33-77 4-39 (341)
254 1sqs_A Conserved hypothetical 35.3 21 0.00072 30.5 2.7 38 35-74 2-40 (242)
255 3g8r_A Probable spore coat pol 35.2 1.3E+02 0.0045 27.3 8.0 63 321-387 79-143 (350)
256 3glr_A NAD-dependent deacetyla 35.1 73 0.0025 28.1 6.2 100 335-439 174-280 (285)
257 3i42_A Response regulator rece 35.0 1.3E+02 0.0043 21.7 9.0 107 304-422 3-121 (127)
258 2e6c_A 5'-nucleotidase SURE; S 34.9 1.7E+02 0.0057 25.0 8.2 37 35-78 1-37 (244)
259 3n8k_A 3-dehydroquinate dehydr 34.9 1.7E+02 0.0058 23.2 9.1 94 323-422 60-168 (172)
260 3sbx_A Putative uncharacterize 34.8 61 0.0021 26.5 5.3 47 347-395 100-154 (189)
261 2rjn_A Response regulator rece 34.7 1.5E+02 0.005 22.4 9.7 107 304-422 7-125 (154)
262 3hs3_A Ribose operon repressor 34.7 1.2E+02 0.004 26.0 7.7 45 28-75 4-49 (277)
263 3u3x_A Oxidoreductase; structu 34.6 1.1E+02 0.0036 27.9 7.6 33 134-166 82-117 (361)
264 3kb6_A D-lactate dehydrogenase 34.5 88 0.003 28.2 6.9 42 347-388 186-232 (334)
265 3nbm_A PTS system, lactose-spe 34.3 50 0.0017 24.2 4.2 78 304-386 6-85 (108)
266 2d1p_B TUSC, hypothetical UPF0 34.3 38 0.0013 25.2 3.7 38 36-73 3-40 (119)
267 2khz_A C-MYC-responsive protei 34.0 1.7E+02 0.0059 23.0 8.4 70 351-422 73-150 (165)
268 3euw_A MYO-inositol dehydrogen 33.9 1.5E+02 0.0052 26.5 8.6 33 134-166 59-94 (344)
269 3e9m_A Oxidoreductase, GFO/IDH 33.9 1.3E+02 0.0044 26.9 8.0 33 134-166 61-96 (330)
270 1zh8_A Oxidoreductase; TM0312, 33.8 1.6E+02 0.0054 26.4 8.6 95 267-386 16-113 (340)
271 3q0i_A Methionyl-tRNA formyltr 33.7 2.3E+02 0.0079 25.2 9.4 91 269-373 7-103 (318)
272 2hpv_A FMN-dependent NADH-azor 33.3 39 0.0013 27.9 4.1 40 35-74 2-43 (208)
273 3r7f_A Aspartate carbamoyltran 33.3 90 0.0031 27.7 6.5 54 13-76 129-182 (304)
274 3bq9_A Predicted rossmann fold 33.3 49 0.0017 31.2 4.9 71 348-422 238-331 (460)
275 3grf_A Ornithine carbamoyltran 33.2 1.8E+02 0.006 26.2 8.5 79 269-362 161-241 (328)
276 3k4h_A Putative transcriptiona 33.2 1.3E+02 0.0044 25.9 7.8 44 28-74 2-50 (292)
277 3hdv_A Response regulator; PSI 33.1 1.4E+02 0.0048 21.8 9.6 107 304-422 7-126 (136)
278 3cea_A MYO-inositol 2-dehydrog 33.0 1.4E+02 0.0047 26.8 8.1 69 303-386 32-102 (346)
279 4gqa_A NAD binding oxidoreduct 33.0 93 0.0032 28.9 7.1 102 267-386 24-127 (412)
280 1ydh_A AT5G11950; structural g 33.0 63 0.0021 27.1 5.2 72 347-420 97-187 (216)
281 1p2f_A Response regulator; DRR 32.9 90 0.0031 25.6 6.4 104 306-422 4-116 (220)
282 4h31_A Otcase, ornithine carba 32.8 1.4E+02 0.0048 27.2 7.9 64 13-85 161-224 (358)
283 4fe7_A Xylose operon regulator 32.7 2.9E+02 0.01 25.3 14.4 60 275-344 178-239 (412)
284 1p9l_A Dihydrodipicolinate red 32.6 54 0.0018 28.1 4.9 41 348-388 37-78 (245)
285 1f8y_A Nucleoside 2-deoxyribos 32.4 89 0.003 24.6 5.7 36 351-386 74-113 (157)
286 1p6q_A CHEY2; chemotaxis, sign 32.3 1.4E+02 0.0048 21.5 8.6 108 304-422 6-126 (129)
287 3jy6_A Transcriptional regulat 32.2 1.2E+02 0.0042 25.8 7.4 42 31-75 4-45 (276)
288 3ohs_X Trans-1,2-dihydrobenzen 32.2 1.4E+02 0.0047 26.7 7.9 33 134-166 60-95 (334)
289 3c3m_A Response regulator rece 32.2 1.5E+02 0.0051 21.8 9.9 108 305-422 4-122 (138)
290 3u7i_A FMN-dependent NADH-azor 32.2 43 0.0015 28.3 4.1 42 33-74 3-48 (223)
291 3h5o_A Transcriptional regulat 32.1 2.2E+02 0.0075 25.2 9.4 41 31-74 59-99 (339)
292 4h3v_A Oxidoreductase domain p 32.0 25 0.00084 32.4 2.9 99 269-386 6-106 (390)
293 2m1z_A LMO0427 protein; homolo 31.8 83 0.0028 22.9 5.0 97 306-422 4-104 (106)
294 1t0i_A YLR011WP; FMN binding p 31.8 31 0.0011 28.0 3.2 30 35-64 1-30 (191)
295 3rqi_A Response regulator prot 31.8 1.4E+02 0.0047 23.6 7.2 107 304-422 7-124 (184)
296 3u80_A 3-dehydroquinate dehydr 31.7 1.8E+02 0.0063 22.6 10.1 94 323-422 36-147 (151)
297 3t6k_A Response regulator rece 31.6 1.5E+02 0.0053 21.7 9.5 107 304-422 4-123 (136)
298 1gtz_A 3-dehydroquinate dehydr 31.5 95 0.0032 24.3 5.5 98 320-422 35-147 (156)
299 2p2s_A Putative oxidoreductase 31.5 1E+02 0.0035 27.6 6.9 69 303-386 27-97 (336)
300 3oqb_A Oxidoreductase; structu 31.5 1.1E+02 0.0038 28.0 7.3 56 323-386 57-114 (383)
301 3o1l_A Formyltetrahydrofolate 31.3 2.8E+02 0.0094 24.6 9.8 106 32-169 103-210 (302)
302 3db2_A Putative NADPH-dependen 31.3 78 0.0027 28.7 6.1 68 303-386 28-97 (354)
303 2fzv_A Putative arsenical resi 31.3 27 0.00092 30.7 2.7 41 32-74 56-96 (279)
304 4hs4_A Chromate reductase; tri 31.2 20 0.00068 29.7 1.8 35 29-65 1-36 (199)
305 1bvy_F Protein (cytochrome P45 31.2 26 0.00088 28.8 2.5 36 33-70 20-55 (191)
306 3cg0_A Response regulator rece 31.0 1.6E+02 0.0053 21.6 9.7 107 304-422 9-127 (140)
307 1t5b_A Acyl carrier protein ph 31.0 36 0.0012 27.8 3.5 40 35-74 2-42 (201)
308 1kjn_A MTH0777; hypotethical p 30.7 66 0.0023 25.0 4.4 43 29-74 1-43 (157)
309 3gyb_A Transcriptional regulat 30.6 1.4E+02 0.0048 25.5 7.5 42 31-75 2-43 (280)
310 2nvw_A Galactose/lactose metab 30.5 1.2E+02 0.0041 29.0 7.4 42 29-74 34-75 (479)
311 4amu_A Ornithine carbamoyltran 30.3 1.3E+02 0.0045 27.5 7.2 54 13-77 162-215 (365)
312 1zq6_A Otcase, ornithine carba 30.2 1.7E+02 0.0059 26.6 7.9 58 13-76 170-229 (359)
313 3kke_A LACI family transcripti 30.0 2.2E+02 0.0074 24.7 8.8 44 29-75 10-53 (303)
314 3llv_A Exopolyphosphatase-rela 30.0 53 0.0018 24.9 4.1 34 33-76 5-38 (141)
315 1dcf_A ETR1 protein; beta-alph 29.9 1.6E+02 0.0055 21.4 7.7 106 304-422 7-128 (136)
316 3f6c_A Positive transcription 29.8 1.6E+02 0.0055 21.3 8.3 106 305-422 2-119 (134)
317 3uuw_A Putative oxidoreductase 29.7 2.6E+02 0.0089 24.4 9.2 35 31-74 3-38 (308)
318 4hkt_A Inositol 2-dehydrogenas 29.7 84 0.0029 28.1 6.0 67 303-386 26-94 (331)
319 3tqq_A Methionyl-tRNA formyltr 29.5 1.5E+02 0.0051 26.4 7.4 42 323-366 48-91 (314)
320 2jba_A Phosphate regulon trans 29.4 1.6E+02 0.0053 21.1 6.7 108 306-422 4-121 (127)
321 1zq6_A Otcase, ornithine carba 29.4 1.5E+02 0.0051 27.0 7.4 80 269-364 190-274 (359)
322 1js1_X Transcarbamylase; alpha 29.4 1.2E+02 0.0043 27.1 6.8 57 13-77 149-206 (324)
323 3b6i_A Flavoprotein WRBA; flav 29.2 27 0.00092 28.5 2.3 36 35-72 2-38 (198)
324 3e18_A Oxidoreductase; dehydro 29.2 1.1E+02 0.0039 27.7 6.9 40 347-386 55-96 (359)
325 3v5n_A Oxidoreductase; structu 29.1 1.1E+02 0.0038 28.5 6.9 71 303-386 63-141 (417)
326 2ho3_A Oxidoreductase, GFO/IDH 29.1 1E+02 0.0036 27.4 6.5 69 303-386 24-93 (325)
327 3hr4_A Nitric oxide synthase, 29.1 29 0.00098 29.3 2.4 48 22-74 28-75 (219)
328 3kto_A Response regulator rece 29.0 94 0.0032 22.9 5.4 107 304-422 6-125 (136)
329 3r6w_A FMN-dependent NADH-azor 28.7 36 0.0012 28.3 3.1 38 34-71 1-41 (212)
330 3lft_A Uncharacterized protein 28.4 84 0.0029 27.4 5.7 86 33-167 1-89 (295)
331 1pg5_A Aspartate carbamoyltran 28.3 1.3E+02 0.0043 26.7 6.6 55 13-77 131-186 (299)
332 2qv0_A Protein MRKE; structura 28.1 1.8E+02 0.0061 21.4 10.4 108 304-422 9-126 (143)
333 2wqp_A Polysialic acid capsule 28.0 1.2E+02 0.0042 27.5 6.5 65 320-388 91-157 (349)
334 3kjx_A Transcriptional regulat 27.8 2.4E+02 0.0082 25.0 8.8 43 30-75 64-106 (344)
335 1weh_A Conserved hypothetical 27.7 69 0.0024 25.6 4.4 66 349-419 91-170 (171)
336 3g1w_A Sugar ABC transporter; 27.7 2.1E+02 0.0072 24.7 8.3 87 31-167 1-92 (305)
337 3lte_A Response regulator; str 27.7 1.7E+02 0.0059 21.1 9.6 106 304-422 6-124 (132)
338 2ark_A Flavodoxin; FMN, struct 27.4 28 0.00096 28.3 2.1 37 34-74 4-41 (188)
339 1vli_A Spore coat polysacchari 27.2 1.2E+02 0.004 28.0 6.3 62 322-387 103-166 (385)
340 3tb6_A Arabinose metabolism tr 27.2 2.5E+02 0.0087 23.9 8.7 39 34-75 15-53 (298)
341 3kzn_A Aotcase, N-acetylornith 27.2 1.7E+02 0.0058 26.7 7.5 61 13-77 170-230 (359)
342 3m6m_D Sensory/regulatory prot 27.0 1.9E+02 0.0066 21.4 8.9 107 304-422 14-135 (143)
343 3b2n_A Uncharacterized protein 26.9 1.8E+02 0.0063 21.1 8.8 107 305-422 4-122 (133)
344 1xea_A Oxidoreductase, GFO/IDH 26.9 86 0.0029 28.0 5.5 69 303-386 26-94 (323)
345 3mc3_A DSRE/DSRF-like family p 26.8 32 0.0011 26.3 2.2 37 33-69 14-50 (134)
346 1lss_A TRK system potassium up 26.7 67 0.0023 24.0 4.1 32 34-75 4-35 (140)
347 1d4a_A DT-diaphorase, quinone 26.6 36 0.0012 29.8 2.8 38 34-71 2-39 (273)
348 4h31_A Otcase, ornithine carba 26.5 2.5E+02 0.0086 25.5 8.4 80 268-364 180-259 (358)
349 3c97_A Signal transduction his 26.4 1.9E+02 0.0066 21.2 11.4 107 304-422 10-129 (140)
350 2a33_A Hypothetical protein; s 26.4 1E+02 0.0034 25.8 5.3 70 350-421 104-192 (215)
351 3p0r_A Azoreductase; structura 26.4 37 0.0013 28.3 2.7 41 34-74 4-46 (211)
352 3f2v_A General stress protein 26.3 39 0.0013 27.7 2.7 36 34-71 1-36 (192)
353 3uug_A Multiple sugar-binding 26.2 2.6E+02 0.0089 24.4 8.7 40 33-75 2-41 (330)
354 3cfy_A Putative LUXO repressor 26.2 1.9E+02 0.0067 21.1 8.7 105 306-422 6-121 (137)
355 1mkz_A Molybdenum cofactor bio 26.1 2E+02 0.0067 22.9 6.9 38 32-69 8-45 (172)
356 3cea_A MYO-inositol 2-dehydrog 26.1 2.3E+02 0.0078 25.3 8.3 32 135-166 66-100 (346)
357 3nvt_A 3-deoxy-D-arabino-heptu 26.0 3.9E+02 0.013 24.6 14.4 105 272-388 144-258 (385)
358 2b4a_A BH3024; flavodoxin-like 26.0 1.9E+02 0.0066 21.1 10.3 107 303-422 14-130 (138)
359 3i4f_A 3-oxoacyl-[acyl-carrier 25.9 1.8E+02 0.006 24.7 7.2 37 31-75 3-39 (264)
360 1wgu_A APBB2, amyloid beta (A4 25.9 1.5E+02 0.0052 22.6 5.8 49 265-313 13-64 (136)
361 1vl6_A Malate oxidoreductase; 25.4 2E+02 0.0068 26.5 7.5 85 287-383 179-290 (388)
362 3gv0_A Transcriptional regulat 25.3 1.8E+02 0.0062 24.9 7.3 45 28-74 2-47 (288)
363 3mz0_A Inositol 2-dehydrogenas 25.3 87 0.003 28.2 5.2 70 303-386 26-97 (344)
364 3l49_A ABC sugar (ribose) tran 25.2 1.6E+02 0.0055 25.2 6.9 62 284-356 172-236 (291)
365 3moi_A Probable dehydrogenase; 25.1 2.6E+02 0.0088 25.6 8.6 33 134-166 58-93 (387)
366 3rot_A ABC sugar transporter, 25.0 2.2E+02 0.0076 24.5 7.9 88 32-167 1-92 (297)
367 4gx0_A TRKA domain protein; me 24.8 4.8E+02 0.016 25.2 13.4 33 34-76 127-159 (565)
368 3euw_A MYO-inositol dehydrogen 24.8 1.3E+02 0.0044 27.0 6.3 68 303-386 27-96 (344)
369 1fmt_A Methionyl-tRNA FMet for 24.7 3.7E+02 0.013 23.8 9.9 39 324-364 50-90 (314)
370 3hgm_A Universal stress protei 24.3 2.2E+02 0.0075 21.1 9.2 64 321-384 71-146 (147)
371 2rdm_A Response regulator rece 24.3 2E+02 0.0068 20.6 10.8 108 304-422 5-122 (132)
372 2gwr_A DNA-binding response re 24.1 3E+02 0.01 22.6 9.0 106 305-422 6-121 (238)
373 3d7n_A Flavodoxin, WRBA-like p 23.9 25 0.00085 28.8 1.1 35 29-65 1-35 (193)
374 3mz0_A Inositol 2-dehydrogenas 23.8 3.5E+02 0.012 24.1 9.1 33 134-166 60-95 (344)
375 2fb6_A Conserved hypothetical 23.8 30 0.001 25.8 1.4 40 34-74 7-48 (117)
376 2oho_A Glutamate racemase; iso 23.8 2.6E+02 0.0088 24.2 7.8 38 129-166 63-103 (273)
377 3pdi_A Nitrogenase MOFE cofact 23.6 1.5E+02 0.0051 28.4 6.7 35 129-166 390-424 (483)
378 3ezy_A Dehydrogenase; structur 23.5 1.1E+02 0.0038 27.5 5.6 69 303-386 25-95 (344)
379 3nhm_A Response regulator; pro 23.4 2.1E+02 0.0072 20.6 11.2 108 304-422 4-121 (133)
380 3l4b_C TRKA K+ channel protien 23.3 1.1E+02 0.0039 25.1 5.3 32 35-76 1-32 (218)
381 3n0v_A Formyltetrahydrofolate 23.3 3.8E+02 0.013 23.4 10.2 107 31-169 87-195 (286)
382 1toa_A Tromp-1, protein (perip 23.2 3E+02 0.01 24.4 8.3 92 347-440 79-177 (313)
383 3vnd_A TSA, tryptophan synthas 23.2 2.6E+02 0.0088 24.2 7.5 120 281-419 109-244 (267)
384 1mb3_A Cell division response 23.2 2E+02 0.0069 20.3 9.5 105 306-422 3-120 (124)
385 2cok_A Poly [ADP-ribose] polym 23.1 1.1E+02 0.0037 22.5 4.4 65 304-385 13-77 (113)
386 2p2s_A Putative oxidoreductase 22.9 2.3E+02 0.008 25.2 7.7 33 134-166 60-95 (336)
387 3ksm_A ABC-type sugar transpor 22.9 3.4E+02 0.011 22.7 15.4 63 283-355 170-232 (276)
388 1y5e_A Molybdenum cofactor bio 22.8 2.8E+02 0.0096 21.8 7.4 44 32-75 11-54 (169)
389 3crn_A Response regulator rece 22.8 2.2E+02 0.0075 20.6 10.0 107 304-422 3-120 (132)
390 3uhf_A Glutamate racemase; str 22.8 1.9E+02 0.0066 25.1 6.7 37 130-166 76-115 (274)
391 4h3v_A Oxidoreductase domain p 22.8 1.2E+02 0.004 27.7 5.7 33 134-166 69-104 (390)
392 2q9u_A A-type flavoprotein; fl 22.6 4.4E+02 0.015 24.0 10.2 99 284-386 239-348 (414)
393 3clk_A Transcription regulator 22.6 1.9E+02 0.0066 24.8 6.9 42 29-73 3-44 (290)
394 1zgz_A Torcad operon transcrip 22.6 2.1E+02 0.0071 20.2 8.6 106 305-422 3-118 (122)
395 3brq_A HTH-type transcriptiona 22.6 2.6E+02 0.0087 23.9 7.8 43 29-74 14-58 (296)
396 3ohs_X Trans-1,2-dihydrobenzen 22.5 1.3E+02 0.0044 26.9 5.8 68 304-386 28-97 (334)
397 2knc_A Integrin alpha-IIB; tra 22.5 66 0.0022 20.1 2.5 19 4-22 8-26 (54)
398 2yfk_A Aspartate/ornithine car 22.4 3.8E+02 0.013 25.0 8.8 83 269-364 188-272 (418)
399 2rgy_A Transcriptional regulat 22.4 2.4E+02 0.0082 24.1 7.5 44 29-75 3-46 (290)
400 3iwt_A 178AA long hypothetical 22.3 2.5E+02 0.0085 22.3 7.0 48 28-75 9-63 (178)
401 3c3k_A Alanine racemase; struc 22.2 2.2E+02 0.0075 24.3 7.2 43 29-74 3-45 (285)
402 3m2t_A Probable dehydrogenase; 22.1 1.5E+02 0.0052 26.8 6.3 33 134-166 62-97 (359)
403 4amu_A Ornithine carbamoyltran 22.0 2.5E+02 0.0086 25.6 7.4 79 268-363 179-259 (365)
404 3dhn_A NAD-dependent epimerase 22.0 86 0.0029 25.9 4.3 34 34-76 4-37 (227)
405 1h05_A 3-dehydroquinate dehydr 21.9 2.8E+02 0.0095 21.4 9.5 97 320-421 31-141 (146)
406 3e8x_A Putative NAD-dependent 21.9 88 0.003 26.1 4.3 39 29-76 16-54 (236)
407 4hyl_A Stage II sporulation pr 21.8 1.8E+02 0.0062 20.9 5.6 67 270-353 44-112 (117)
408 3end_A Light-independent proto 21.8 1.3E+02 0.0043 26.5 5.5 47 27-77 33-79 (307)
409 3rpe_A MDAB, modulator of drug 21.7 48 0.0017 27.8 2.5 41 33-73 24-68 (218)
410 4ew6_A D-galactose-1-dehydroge 21.6 1E+02 0.0036 27.6 4.9 39 348-386 71-112 (330)
411 3lcm_A SMU.1420, putative oxid 21.5 42 0.0014 27.5 2.1 36 35-74 1-37 (196)
412 3svl_A Protein YIEF; E. coli C 21.5 26 0.00088 28.8 0.7 22 32-54 2-23 (193)
413 2czc_A Glyceraldehyde-3-phosph 21.5 98 0.0033 27.9 4.7 39 348-386 72-110 (334)
414 2glx_A 1,5-anhydro-D-fructose 21.3 1.5E+02 0.0053 26.2 6.1 68 304-386 24-93 (332)
415 1ycg_A Nitric oxide reductase; 21.2 4.6E+02 0.016 23.7 12.6 99 283-385 234-341 (398)
416 2ka5_A Putative anti-sigma fac 21.1 1.5E+02 0.0052 21.8 5.1 47 282-343 68-114 (125)
417 4id9_A Short-chain dehydrogena 21.1 81 0.0028 28.2 4.2 39 29-76 14-52 (347)
418 1ydw_A AX110P-like protein; st 21.1 4E+02 0.014 23.9 9.0 32 135-166 66-100 (362)
419 3ec7_A Putative dehydrogenase; 21.0 1.2E+02 0.0042 27.4 5.4 70 303-386 47-118 (357)
420 3zqu_A Probable aromatic acid 20.9 82 0.0028 26.2 3.7 36 33-72 3-38 (209)
421 3slg_A PBGP3 protein; structur 20.9 87 0.003 28.4 4.4 41 27-76 17-58 (372)
422 2pju_A Propionate catabolism o 20.9 2.8E+02 0.0096 23.2 7.1 101 285-422 93-193 (225)
423 2bw0_A 10-FTHFDH, 10-formyltet 20.8 3.9E+02 0.014 23.8 8.5 12 324-335 63-74 (329)
424 3mcu_A Dipicolinate synthase, 20.7 76 0.0026 26.4 3.4 34 34-72 5-40 (207)
425 3f6p_A Transcriptional regulat 20.7 2.3E+02 0.0079 20.0 8.7 105 306-422 4-118 (120)
426 1th8_B Anti-sigma F factor ant 20.7 1.4E+02 0.0046 21.4 4.7 47 282-343 59-105 (116)
427 3ew7_A LMO0794 protein; Q8Y8U8 20.6 1E+02 0.0034 25.2 4.4 33 35-76 1-33 (221)
428 3ezy_A Dehydrogenase; structur 20.6 3E+02 0.01 24.5 7.9 33 134-166 58-93 (344)
429 3eag_A UDP-N-acetylmuramate:L- 20.5 4.5E+02 0.015 23.2 9.5 35 33-76 3-37 (326)
430 3brs_A Periplasmic binding pro 20.4 3.5E+02 0.012 22.9 8.2 40 33-75 4-45 (289)
431 3tpf_A Otcase, ornithine carba 20.3 4.5E+02 0.015 23.2 9.1 78 269-364 146-223 (307)
432 1h6d_A Precursor form of gluco 20.3 3.1E+02 0.011 25.6 8.1 31 136-166 146-179 (433)
433 2iks_A DNA-binding transcripti 20.2 3.6E+02 0.012 22.9 8.3 42 30-74 16-57 (293)
434 1xhf_A DYE resistance, aerobic 20.2 2.3E+02 0.008 19.9 9.0 107 304-422 3-119 (123)
435 2qu7_A Putative transcriptiona 20.1 2.8E+02 0.0096 23.6 7.5 42 29-74 3-44 (288)
436 3snk_A Response regulator CHEY 20.1 1.1E+02 0.0039 22.4 4.3 107 304-422 14-132 (135)
437 3obi_A Formyltetrahydrofolate 20.1 2.7E+02 0.0093 24.4 7.1 38 32-75 87-124 (288)
438 3h75_A Periplasmic sugar-bindi 20.1 3E+02 0.01 24.4 7.9 88 32-167 1-92 (350)
439 1q74_A 1D-MYO-inosityl 2-aceta 20.0 3.2E+02 0.011 24.0 7.7 40 34-76 4-43 (303)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=6.9e-44 Score=345.67 Aligned_cols=358 Identities=17% Similarity=0.202 Sum_probs=275.9
Q ss_pred cccceEEEecCCCCCC-CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccc
Q 012436 32 NRTTSVAFFHPNTNDG-GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKW 110 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~-GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (464)
+++|||+++++.+++. ||+++++.+++++| .|| +|.+++.... ...........++ .++.++....
T Consensus 2 ~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~--~v~v~~~~~~---~~~~~~~~~~~~~------~~~~~~~~~~ 68 (394)
T 3okp_A 2 SASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPE--SIVVFASTQN---AEEAHAYDKTLDY------EVIRWPRSVM 68 (394)
T ss_dssp --CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGG--GEEEEEECSS---HHHHHHHHTTCSS------EEEEESSSSC
T ss_pred CCCceEEEEeCccCCccchHHHHHHHHHHHh--cCC--eEEEEECCCC---ccchhhhccccce------EEEEcccccc
Confidence 5679999999866544 89999999999999 574 5555554321 1111222222222 4444443221
Q ss_pred cccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCce-EEEEeeCCcchhhhhhcccccccc
Q 012436 111 IEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCR-VICYTHYPTISLDMISRVREGSSM 187 (464)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p-~v~~~h~p~~~~~~~~~~~~~~~~ 187 (464)
. ........+.+.+++.+||+||.+........ +++..++| +|++.|....
T Consensus 69 ~------------~~~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-------------- 122 (394)
T 3okp_A 69 L------------PTPTTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEV-------------- 122 (394)
T ss_dssp C------------SCHHHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHH--------------
T ss_pred c------------cchhhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchh--------------
Confidence 1 11234556677788999999997665444332 55567886 7778884321
Q ss_pred cCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCC---
Q 012436 188 YNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE--- 264 (464)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~--- 264 (464)
............+.+++.+|.++++|+..++.+.+.++...++.++|||+|.+.+.+....
T Consensus 123 ----------------~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~ 186 (394)
T 3okp_A 123 ----------------GWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKS 186 (394)
T ss_dssp ----------------HHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHH
T ss_pred ----------------hhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhH
Confidence 0001112233456777999999999999999999988777899999999999877642111
Q ss_pred -------CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCc
Q 012436 265 -------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGN 337 (464)
Q Consensus 265 -------~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~ 337 (464)
..++.++++|+|++.+.||++.+++|++.+.++. |+++|+++|+++.. +.+++++ .++.++
T Consensus 187 ~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~~------~~l~~~~--~~~~~~ 254 (394)
T 3okp_A 187 ATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAAR----PDAQLLIVGSGRYE------STLRRLA--TDVSQN 254 (394)
T ss_dssp HHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHS----TTCEEEEECCCTTH------HHHHHHT--GGGGGG
T ss_pred HHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHHHhhC----CCeEEEEEcCchHH------HHHHHHH--hcccCe
Confidence 1345589999999999999999999999998876 69999999998643 6677776 455689
Q ss_pred EEEccCCChhHHHHHHhcCcEEEEcCCC-------CCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--
Q 012436 338 VEFYKNLLYRDLVKLLGGAVVGIHSMID-------EHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-- 408 (464)
Q Consensus 338 v~~~g~~~~~~~~~~l~~ad~~v~ps~~-------e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-- 408 (464)
|.++|+++++++.++|+.||++|+||.. |++|++++|||++|+|||+++.++. .+++.+ + +|++++
T Consensus 255 v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~-~e~i~~---~-~g~~~~~~ 329 (394)
T 3okp_A 255 VKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGA-PETVTP---A-TGLVVEGS 329 (394)
T ss_dssp EEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTG-GGGCCT---T-TEEECCTT
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHcCCCEEEeCCCCh-HHHHhc---C-CceEeCCC
Confidence 9999999999999999999999999998 9999999999999999999999988 788888 7 999987
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhhc
Q 012436 409 NAEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 409 ~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
|+++++++|.++++ |++.++++++++++.+ ++|+|+.+++++.++|+++.+++
T Consensus 330 d~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~~ 383 (394)
T 3okp_A 330 DVDKLSELLIELLD-DPIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPRKL 383 (394)
T ss_dssp CHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC--
T ss_pred CHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccCc
Confidence 99999999999999 9999999999999999 78999999999999999877543
No 2
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.1e-43 Score=349.26 Aligned_cols=389 Identities=16% Similarity=0.139 Sum_probs=275.0
Q ss_pred cccccceEEEecCCCCC--------CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCce
Q 012436 30 RRNRTTSVAFFHPNTND--------GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPK 101 (464)
Q Consensus 30 ~~~~~mkI~~~~~~~~~--------~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (464)
..+++|||+++++.+.+ .||+++++.+++++|.+.||+|+ +++......... ......+++
T Consensus 16 ~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~--v~~~~~~~~~~~---------~~~~~~~v~ 84 (438)
T 3c48_A 16 PRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVD--IYTRATRPSQGE---------IVRVAENLR 84 (438)
T ss_dssp ---CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEE--EEEECCCGGGCS---------EEEEETTEE
T ss_pred cCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEE--EEecCCCCCCcc---------cccccCCeE
Confidence 34577999999976543 38999999999999999995555 444332100000 001112334
Q ss_pred eeeeecccccccccCcceehhhhchhhhHHHHHH-hhhc-CCcEEEecccccccch--hhhccCceEEEEeeCCcchhhh
Q 012436 102 VVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEA-LCKF-TPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDM 177 (464)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~-~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~ 177 (464)
++.++...+........+..+ ........+. +++. +||+||.+........ +++..++|+|+++|........
T Consensus 85 v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~ 161 (438)
T 3c48_A 85 VINIAAGPYEGLSKEELPTQL---AAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNS 161 (438)
T ss_dssp EEEECCSCSSSCCGGGGGGGH---HHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSCHHHHSC
T ss_pred EEEecCCCccccchhHHHHHH---HHHHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCCcccccc
Confidence 554443221100000000000 1111122233 4433 4999997754332222 4557799999999954210000
Q ss_pred hhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCC
Q 012436 178 ISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTS 256 (464)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~ 256 (464)
. + ...... .......+++.+++.+|.++++|+..++.+.+.++. ..++.++|||+|.+
T Consensus 162 --~-------~---------~~~~~~---~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~ 220 (438)
T 3c48_A 162 --Y-------R---------DDSDTP---ESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVE 220 (438)
T ss_dssp --C--------------------CCH---HHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTT
T ss_pred --c-------c---------cccCCc---chHHHHHHHHHHHhcCCEEEEcCHHHHHHHHHHhCCChhheEEecCCcccc
Confidence 0 0 000000 011223456778899999999999999999987776 57899999999988
Q ss_pred CCccCCCCC----------CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHH
Q 012436 257 GLQVLPLER----------STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLK 326 (464)
Q Consensus 257 ~~~~~~~~~----------~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~ 326 (464)
.+.+.+... .++.++++|+|++.+.||++.+++|+..+.++.++ .+++|+++|+.... ..+.++++
T Consensus 221 ~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~--~~~~l~i~G~~~~~--g~~~~~l~ 296 (438)
T 3c48_A 221 LYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPD--RNLRVIICGGPSGP--NATPDTYR 296 (438)
T ss_dssp TSCCC----CHHHHHHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTT--CSEEEEEECCBC--------CHHH
T ss_pred ccCCcccchhhhhHHhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCC--cceEEEEEeCCCCC--CcHHHHHH
Confidence 776432211 24568999999999999999999999999887511 27999999982110 02347889
Q ss_pred HHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceee
Q 012436 327 DKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFL 406 (464)
Q Consensus 327 ~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~ 406 (464)
++++++++.++|.|+|+++++++.++|+.||++|+||..|++|++++|||++|+|||+++.++. .+++.+ +.+|++
T Consensus 297 ~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~-~e~i~~---~~~g~~ 372 (438)
T 3c48_A 297 HMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGL-PIAVAE---GETGLL 372 (438)
T ss_dssp HHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTH-HHHSCB---TTTEEE
T ss_pred HHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCCh-hHHhhC---CCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999988 788888 889998
Q ss_pred cC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhc
Q 012436 407 AQ--NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 407 ~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
++ |+++++++|.++++ |++.++++++++++.+++|+|+.+++++.++|++++.++
T Consensus 373 ~~~~d~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3c48_A 373 VDGHSPHAWADALATLLD-DDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANE 429 (438)
T ss_dssp ESSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhc
Confidence 86 99999999999999 999999999999999944999999999999999998764
No 3
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=1.6e-43 Score=353.69 Aligned_cols=398 Identities=17% Similarity=0.114 Sum_probs=282.5
Q ss_pred ccceEEEecCCCCC------------CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCccc--CC
Q 012436 33 RTTSVAFFHPNTND------------GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVEL--LH 98 (464)
Q Consensus 33 ~~mkI~~~~~~~~~------------~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 98 (464)
++|||+++++.+.+ .||+++++.+++++|.+.||+|+|++...... ....+.+.. ..+ ..
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~-~~~~~~~~~-----~~~~~~~ 79 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDE-NWPEFSGEI-----DYYQETN 79 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBT-TBGGGCCSE-----EECTTCS
T ss_pred ccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcc-cccchhhhH-----HhccCCC
Confidence 46999999875432 38999999999999999995555444332210 001100000 001 12
Q ss_pred CceeeeeecccccccccCcceehhhhchhhhHHHHHHhhh--cCCcEEEecccccccch--hhhccCceEEEEeeCCcch
Q 012436 99 PPKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCK--FTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTIS 174 (464)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~ 174 (464)
+++++.++...... .+..............+.+.+++ .+||+||.+........ +++..++|+|+++|.....
T Consensus 80 gv~v~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~~~~p~v~~~H~~~~~ 156 (499)
T 2r60_A 80 KVRIVRIPFGGDKF---LPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQ 156 (499)
T ss_dssp SEEEEEECCSCSSC---CCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHCCCEEEECSSCHHH
T ss_pred CeEEEEecCCCcCC---cCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHhcCCcEEEEccCcccc
Confidence 33555544321100 00000000001112345556666 58999998765433322 4557799999999953210
Q ss_pred hhhhhcccccccccCCCcccccchhh-hHHHHHH-HHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHH--hC------CCC
Q 012436 175 LDMISRVREGSSMYNNNASIAQSNWL-SQCKIVY-YTFFSWMYGLVGSCADLAMVNSSWTQSHIEKL--WG------IPD 244 (464)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~--~~------~~~ 244 (464)
.. .... . ..+. ......+ .....++++.+++.+|.++++|+..++.+.+. ++ ...
T Consensus 157 ~~--~~~~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ 221 (499)
T 2r60_A 157 KM--EKLN-------V------NTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDD 221 (499)
T ss_dssp HH--HTTC-------C------CSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGG
T ss_pred cc--hhhc-------c------CCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCC
Confidence 00 0000 0 0000 0011111 11223456788899999999999999998887 66 457
Q ss_pred CeEEecCCCCCCCCccCCCC----------------CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEE
Q 012436 245 RIKRVYPPCDTSGLQVLPLE----------------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQ 308 (464)
Q Consensus 245 ~i~~i~~~~d~~~~~~~~~~----------------~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~ 308 (464)
++.+||||+|.+.+.+.... ..++.++|+|+|++.+.||++.+++|+..+.++..+ .++++
T Consensus 222 ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~---~~~l~ 298 (499)
T 2r60_A 222 KFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDK---ANLVL 298 (499)
T ss_dssp GEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHH---CEEEE
T ss_pred CeEEECCCcChhhcCccchhhhHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCC---ceEEE
Confidence 89999999998877643220 234568999999999999999999999998776421 46899
Q ss_pred EEcCCCCC---------ccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC----cEEEEcCCCCCCChHHHHH
Q 012436 309 FVGSCRNK---------SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----VVGIHSMIDEHFGISVVEY 375 (464)
Q Consensus 309 i~G~~~~~---------~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a----d~~v~ps~~e~~~~~~~Ea 375 (464)
|+|+.+.. ++.+|.++++++++++++.++|.|+|+++++++.++|+.| |++|+||..|+||++++||
T Consensus 299 i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEA 378 (499)
T 2r60_A 299 TLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEA 378 (499)
T ss_dssp EESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHH
T ss_pred EECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHH
Confidence 99983221 1234478999999999999999999999999999999999 9999999999999999999
Q ss_pred HHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHH
Q 012436 376 MAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFK 452 (464)
Q Consensus 376 ~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~ 452 (464)
|+||+|||+|+.+|. .|++.+ +.+|++++ |+++++++|.++++ |++.++++++++++.+ ++|||+.+++++.
T Consensus 379 ma~G~PvI~s~~~g~-~e~v~~---~~~g~l~~~~d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 453 (499)
T 2r60_A 379 MASGLPAVVTRNGGP-AEILDG---GKYGVLVDPEDPEDIARGLLKAFE-SEETWSAYQEKGKQRVEERYTWQETARGYL 453 (499)
T ss_dssp HHTTCCEEEESSBHH-HHHTGG---GTSSEEECTTCHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHSBHHHHHHHHH
T ss_pred HHcCCCEEEecCCCH-HHHhcC---CceEEEeCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999888 788888 78999986 99999999999999 9999999999999999 6799999999999
Q ss_pred HHHHHHHhhc
Q 012436 453 AAIRPILCHA 462 (464)
Q Consensus 453 ~~~~~~~~~~ 462 (464)
++|++++..+
T Consensus 454 ~~y~~~~~~~ 463 (499)
T 2r60_A 454 EVIQEIADRK 463 (499)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhhh
Confidence 9999988654
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=4.4e-43 Score=344.94 Aligned_cols=396 Identities=18% Similarity=0.112 Sum_probs=277.0
Q ss_pred ccceEEEecCCCCC--CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHH---HHhhcC----cccCCCceee
Q 012436 33 RTTSVAFFHPNTND--GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLAR---AVDRFG----VELLHPPKVV 103 (464)
Q Consensus 33 ~~mkI~~~~~~~~~--~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~ 103 (464)
++|||+++++.+.+ .||+++++.+++++|.+.|| +|.++++............ ...... .....+++++
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~ 78 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGH--EVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIY 78 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTC--EEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCC--eEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEE
Confidence 57999999977655 48999999999999999995 4555554321111100000 000000 0012233555
Q ss_pred eeecccccccccCc-ceeh-hhhchhhhHHHHHHhh-----hcCCcEEEecccccccch--hhhccCceEEEEeeCCcch
Q 012436 104 HLYRRKWIEESTYP-RFTM-IGQSFGSVYLSWEALC-----KFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTIS 174 (464)
Q Consensus 104 ~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~-----~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~ 174 (464)
.++...+.....++ .... ............+.++ ..+||+||++.......+ +++..++|+|+++|.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~ 158 (439)
T 3fro_A 79 RIGGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKS 158 (439)
T ss_dssp EEESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHHHCCCEEEEESCCCCC
T ss_pred EecchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhccCCCEEEEecccccc
Confidence 55541111111111 0000 1111111222222233 559999998866544333 4557899999999954310
Q ss_pred hhhhhcccccccccCCCcccccchhh-hHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCC
Q 012436 175 LDMISRVREGSSMYNNNASIAQSNWL-SQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPP 252 (464)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~ 252 (464)
. .... .+. .............+++..++.+|.++++|+..++.....++. ..++.+||||
T Consensus 159 ~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~ng 220 (439)
T 3fro_A 159 K-LPAF-----------------YFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNG 220 (439)
T ss_dssp C-EEHH-----------------HHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGGGTTSEEECCCC
T ss_pred c-CchH-----------------HhCccccccccccceeeHhhhhhhhccEEEecCHHHHHHHhhhhhhcCCceeecCCC
Confidence 0 0000 000 000000000000345777899999999999999886664433 7899999999
Q ss_pred CCCCCCccCCCCC---------------CCCCcEEEEEeccC-CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC
Q 012436 253 CDTSGLQVLPLER---------------STEYPAIISVAQFR-PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK 316 (464)
Q Consensus 253 ~d~~~~~~~~~~~---------------~~~~~~i~~~G~~~-~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~ 316 (464)
+|.+.+.+..... +++ ++++|+|++. +.||++.+++|++.+.++... |+++|+++|+|+.
T Consensus 221 vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~--~~~~l~i~G~g~~- 296 (439)
T 3fro_A 221 IDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEF--QEMRFIIIGKGDP- 296 (439)
T ss_dssp CCTTTSCGGGSCSCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGG--GGEEEEEECCCCH-
T ss_pred CCchhcCcccccchhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccC--CCeEEEEEcCCCh-
Confidence 9998886432110 234 8999999999 999999999999999875411 3899999999862
Q ss_pred ccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceec
Q 012436 317 SDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVL 396 (464)
Q Consensus 317 ~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~ 396 (464)
.+.+.+++++++++ +++.+.|+++.+++.++|+.||++|+||..|++|++++|||+||+|||+|+.++. .+++.
T Consensus 297 ---~~~~~l~~~~~~~~--~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~-~e~~~ 370 (439)
T 3fro_A 297 ---ELEGWARSLEEKHG--NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGL-RDIIT 370 (439)
T ss_dssp ---HHHHHHHHHHHHCT--TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHH-HHHCC
T ss_pred ---hHHHHHHHHHhhcC--CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCc-ceeEE
Confidence 45578899999887 6788999999999999999999999999999999999999999999999999988 78887
Q ss_pred ccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhc
Q 012436 397 EEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 397 ~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
+ + +|++++ |+++++++|.+++++|++.++++++++++.+++|||+.+++++.++|++++++.
T Consensus 371 ~---~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 371 N---E-TGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDRA 434 (439)
T ss_dssp T---T-TCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCSCCB
T ss_pred c---C-ceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhh
Confidence 7 5 998886 999999999999976788999999999999988999999999999999987653
No 5
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=4.5e-42 Score=332.96 Aligned_cols=361 Identities=16% Similarity=0.143 Sum_probs=266.5
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|+.-+...+++..||+++++.+++++|.+.| ++|.+++.... ... . ....++.+..+....+
T Consensus 14 ~~~~~~~~~~p~~GG~~~~~~~la~~L~~~G--~~V~v~~~~~~---~~~-~--------~~~~~i~~~~~~~~~~---- 75 (394)
T 2jjm_A 14 MKLKIGITCYPSVGGSGVVGTELGKQLAERG--HEIHFITSGLP---FRL-N--------KVYPNIYFHEVTVNQY---- 75 (394)
T ss_dssp -CCEEEEECCC--CHHHHHHHHHHHHHHHTT--CEEEEECSSCC----------------CCCTTEEEECCCCC------
T ss_pred heeeeehhcCCCCCCHHHHHHHHHHHHHhCC--CEEEEEeCCCC---Ccc-c--------ccCCceEEEecccccc----
Confidence 4444555555556899999999999999999 56666665421 000 0 0011112222221111
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhh-cc--CceEEEEeeCCcchhhhhhcccccccccC
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LAR-IF--GCRVICYTHYPTISLDMISRVREGSSMYN 189 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~-~~--~~p~v~~~h~p~~~~~~~~~~~~~~~~~~ 189 (464)
+.+......+.....+.+.+++.+||+||.+...+..+. +++ .. ++|+|+++|.... ...
T Consensus 76 --~~~~~~~~~~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~------~~~------- 140 (394)
T 2jjm_A 76 --SVFQYPPYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDI------TVL------- 140 (394)
T ss_dssp ----CCSCCHHHHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHH------HTT-------
T ss_pred --cccccccccHHHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcc------ccc-------
Confidence 111111111233455667788899999998765543322 333 33 5999999993210 000
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCC-----
Q 012436 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE----- 264 (464)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~----- 264 (464)
. ... .+..+++..++.+|.++++|+..++.+.+.++...++.++|||+|.+.+.+....
T Consensus 141 ~-----~~~-----------~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~ 204 (394)
T 2jjm_A 141 G-----SDP-----------SLNNLIRFGIEQSDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKE 204 (394)
T ss_dssp T-----TCT-----------TTHHHHHHHHHHSSEEEESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCCCHHHHHH
T ss_pred C-----CCH-----------HHHHHHHHHHhhCCEEEECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcchHHHHHH
Confidence 0 000 1122456667899999999999999999987766799999999998877643211
Q ss_pred --CCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc
Q 012436 265 --RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (464)
Q Consensus 265 --~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 342 (464)
.+++.++++|+|++.+.||++.+++|++.+.++ ++++|+++|+++.. +++++.++++++.++|.|.|
T Consensus 205 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-----~~~~l~i~G~g~~~------~~l~~~~~~~~l~~~v~~~g 273 (394)
T 2jjm_A 205 YGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-----VDAKLLLVGDGPEF------CTILQLVKNLHIEDRVLFLG 273 (394)
T ss_dssp TTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-----SCCEEEEECCCTTH------HHHHHHHHTTTCGGGBCCCB
T ss_pred cCCCCCCeEEEEeeccccccCHHHHHHHHHHHHhh-----CCCEEEEECCchHH------HHHHHHHHHcCCCCeEEEeC
Confidence 114568999999999999999999999999776 27899999988643 78899999999989999999
Q ss_pred CCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHH
Q 012436 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKI 420 (464)
Q Consensus 343 ~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l 420 (464)
+. +++.++|+.||++++||..|++|++++|||++|+|||+++.++. .|++.+ +.+|++++ |+++++++|.++
T Consensus 274 ~~--~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~-~e~v~~---~~~g~~~~~~d~~~la~~i~~l 347 (394)
T 2jjm_A 274 KQ--DNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGI-PEVIQH---GDTGYLCEVGDTTGVADQAIQL 347 (394)
T ss_dssp SC--SCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCTTS-TTTCCB---TTTEEEECTTCHHHHHHHHHHH
T ss_pred ch--hhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecCCCh-HHHhhc---CCceEEeCCCCHHHHHHHHHHH
Confidence 75 89999999999999999999999999999999999999999988 788888 88999987 999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhhc
Q 012436 421 ISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
++ |++.++++++++++.+ ++|+|+.+++++.++|++++.+.
T Consensus 348 ~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 389 (394)
T 2jjm_A 348 LK-DEELHRNMGERARESVYEQFRSEKIVSQYETIYYDVLRDD 389 (394)
T ss_dssp HH-CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC---
T ss_pred Hc-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Confidence 99 9999999999999999 99999999999999999987653
No 6
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=2.3e-41 Score=329.36 Aligned_cols=362 Identities=16% Similarity=0.154 Sum_probs=267.3
Q ss_pred cccccceEEEecCCCCCC-CCcchhhHHHHHHhhhhCCCCceEEEcccCCCC-chhHHHHHHhhcCcccCCCceeeeeec
Q 012436 30 RRNRTTSVAFFHPNTNDG-GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAF-PDSLLARAVDRFGVELLHPPKVVHLYR 107 (464)
Q Consensus 30 ~~~~~mkI~~~~~~~~~~-GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (464)
+..++|||+++.++.+.. ||+++++.+++++|.+.|| +|.+++...... .... . . ... +++.++.
T Consensus 16 ~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~----~---~---~~~-~~~~~~~ 82 (406)
T 2gek_A 16 PRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGH--EVSVLAPASPHVKLPDY----V---V---SGG-KAVPIPY 82 (406)
T ss_dssp -----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTC--EEEEEESCCTTSCCCTT----E---E---ECC-CCC----
T ss_pred cCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCC--eEEEEecCCccccCCcc----c---c---cCC-cEEeccc
Confidence 445779999999877554 8999999999999999995 555555443111 0000 0 0 000 1111111
Q ss_pred ccccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccc
Q 012436 108 RKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGS 185 (464)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~ 185 (464)
... ...+ .........+.+.+++.+||+||.+......+. +++..++|+|+++|....
T Consensus 83 ~~~-----~~~~---~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~------------ 142 (406)
T 2gek_A 83 NGS-----VARL---RFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTT------------ 142 (406)
T ss_dssp ----------------CCHHHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCC------------
T ss_pred cCC-----cccc---cccHHHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcch------------
Confidence 100 0000 001112345566788889999997666554432 444668999999994321
Q ss_pred cccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC--
Q 012436 186 SMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL-- 263 (464)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~-- 263 (464)
.... .......+ +..++.+|.++++|+..++.+.+.++ ..++ ++|||+|.+.+.....
T Consensus 143 --------------~~~~---~~~~~~~~-~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~~-vi~~~v~~~~~~~~~~~~ 202 (406)
T 2gek_A 143 --------------KSLT---LSVFQGIL-RPYHEKIIGRIAVSDLARRWQMEALG-SDAV-EIPNGVDVASFADAPLLD 202 (406)
T ss_dssp --------------SHHH---HHHHHSTT-HHHHTTCSEEEESSHHHHHHHHHHHS-SCEE-ECCCCBCHHHHHTCCCCT
T ss_pred --------------hhhh---HHHHHHHH-HHHHhhCCEEEECCHHHHHHHHHhcC-CCcE-EecCCCChhhcCCCchhh
Confidence 0000 11111122 26679999999999999999988776 4578 9999998776543321
Q ss_pred CCCCCCcEEEEEecc-CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc
Q 012436 264 ERSTEYPAIISVAQF-RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (464)
Q Consensus 264 ~~~~~~~~i~~~G~~-~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 342 (464)
....+.++++|+|++ .+.||++.+++++..+.++. |+++|+++|+++. +++++.++++ .++|.++|
T Consensus 203 ~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~----~~~~l~i~G~~~~-------~~l~~~~~~~--~~~v~~~g 269 (406)
T 2gek_A 203 GYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARF----PDVEILIVGRGDE-------DELREQAGDL--AGHLRFLG 269 (406)
T ss_dssp TCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTS----TTCEEEEESCSCH-------HHHHHHTGGG--GGGEEECC
T ss_pred hccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHC----CCeEEEEEcCCcH-------HHHHHHHHhc--cCcEEEEe
Confidence 112245799999999 99999999999999998776 6999999999852 5677777766 57999999
Q ss_pred CCChhHHHHHHhcCcEEEEcCC-CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHH
Q 012436 343 NLLYRDLVKLLGGAVVGIHSMI-DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVK 419 (464)
Q Consensus 343 ~~~~~~~~~~l~~ad~~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~ 419 (464)
+++++++.++|+.||++|+||. .|++|++++|||++|+|||+++.++. .+++.+ +.+|++++ |+++++++|.+
T Consensus 270 ~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~~~~-~e~i~~---~~~g~~~~~~d~~~l~~~i~~ 345 (406)
T 2gek_A 270 QVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAF-RRVLAD---GDAGRLVPVDDADGMAAALIG 345 (406)
T ss_dssp SCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECCCHHH-HHHHTT---TTSSEECCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEecCCcH-HHHhcC---CCceEEeCCCCHHHHHHHHHH
Confidence 9999999999999999999995 99999999999999999999999888 788888 88999985 99999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhc
Q 012436 420 IISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 420 l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
+++ |++.++++++++++.+++|+|+.+++++.++|++++..+
T Consensus 346 l~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 387 (406)
T 2gek_A 346 ILE-DDQLRAGYVARASERVHRYDWSVVSAQIMRVYETVSGAG 387 (406)
T ss_dssp HHH-CHHHHHHHHHHHHHHGGGGBHHHHHHHHHHHHHHHCCTT
T ss_pred HHc-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 999 999999999999999889999999999999999988654
No 7
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=1.8e-41 Score=347.89 Aligned_cols=394 Identities=14% Similarity=0.150 Sum_probs=275.9
Q ss_pred cceEEEecCCC----------CCCCCcchhhHH--------HHHHhhhhCCCCc--eEEEcccCCCCch-hHHHHHHhhc
Q 012436 34 TTSVAFFHPNT----------NDGGGGERVLWC--------AVKAIQEESPDLD--CIVYTGDHDAFPD-SLLARAVDRF 92 (464)
Q Consensus 34 ~mkI~~~~~~~----------~~~GG~~~~~~~--------l~~~L~~~g~~~~--v~~~~~~~~~~~~-~~~~~~~~~~ 92 (464)
.++|+++++.. +..||...++.+ ++++|.+.||+|+ |.++|........ .+.....
T Consensus 278 ~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e--- 354 (816)
T 3s28_A 278 VFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLE--- 354 (816)
T ss_dssp CCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEE---
T ss_pred eeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcce---
Confidence 58999998765 344899999984 6777788998774 6677765421110 0000000
Q ss_pred CcccCCCceeeeeeccccc---c--cccCcceehhhhchhhhHHHHHHhh--hcCCcEEEecccccccch--hhhccCce
Q 012436 93 GVELLHPPKVVHLYRRKWI---E--ESTYPRFTMIGQSFGSVYLSWEALC--KFTPLYYFDTSGYAFTYP--LARIFGCR 163 (464)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~Dvv~~~~~~~~~~~--~~~~~~~p 163 (464)
.+.-.+++++++++..... . ..+...+..+..+... .+...++ ..+||+||++........ +++..++|
T Consensus 355 ~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~--~l~~il~~~~~~PDVIHsH~~~sglva~llar~~gvP 432 (816)
T 3s28_A 355 RVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTED--AAVELSKELNGKPDLIIGNYSDGNLVASLLAHKLGVT 432 (816)
T ss_dssp ECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHH--HHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHHHTCC
T ss_pred eecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHH--HHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHHcCCC
Confidence 0111124466666654310 0 0011111111111111 1222232 347999998765444333 66688999
Q ss_pred EEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHH-HHHHHHHHHhhcCCEEEEcCHHHHHHHHHH---
Q 012436 164 VICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYT-FFSWMYGLVGSCADLAMVNSSWTQSHIEKL--- 239 (464)
Q Consensus 164 ~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~--- 239 (464)
+|++.|...... . .. ...........+.. .....++.+++.||.|+++|+..++.+.+.
T Consensus 433 ~V~T~Hsl~~~k----~--------~~-----~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~ 495 (816)
T 3s28_A 433 QCTIAHALEKTK----Y--------PD-----SDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQ 495 (816)
T ss_dssp EEEECSCCHHHH----S--------TT-----TTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCT
T ss_pred EEEEEecccccc----c--------cc-----ccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHH
Confidence 999999432100 0 00 00001111111111 111246778999999999999998853221
Q ss_pred hC-------------------CCCCeEEecCCCCCCCCccCCCCC----------------------------CCCCcEE
Q 012436 240 WG-------------------IPDRIKRVYPPCDTSGLQVLPLER----------------------------STEYPAI 272 (464)
Q Consensus 240 ~~-------------------~~~~i~~i~~~~d~~~~~~~~~~~----------------------------~~~~~~i 272 (464)
++ ...++.+||||+|.+.|.+..... .+++++|
T Consensus 496 y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vI 575 (816)
T 3s28_A 496 YESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPIL 575 (816)
T ss_dssp TGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEE
T ss_pred hhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCCeEE
Confidence 11 023999999999998886433111 3457899
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCC-----CccHHHHHHHHHHHHhcCCCCcEEEccCC---
Q 012436 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN-----KSDEERLQSLKDKSIELKVDGNVEFYKNL--- 344 (464)
Q Consensus 273 ~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~-----~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--- 344 (464)
+|+|++.+.||++.+++|+..+.+.. |+++|+|+|++++ .++.++.++++++++++++.++|.|+|++
T Consensus 576 l~vGRl~~~KGid~LIeA~~~L~~~~----~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~ 651 (816)
T 3s28_A 576 FTMARLDRVKNLSGLVEWYGKNTRLR----ELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDR 651 (816)
T ss_dssp EEECCCCTTTTHHHHHHHHHHCHHHH----HHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCH
T ss_pred EEEccCcccCCHHHHHHHHHHHHhhC----CCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCcccc
Confidence 99999999999999999999998765 5899999999872 22334678999999999999999999955
Q ss_pred -ChhHHHHHHh-cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHH
Q 012436 345 -LYRDLVKLLG-GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKI 420 (464)
Q Consensus 345 -~~~~~~~~l~-~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l 420 (464)
+.+++..+|+ .+|++++||..|+||++++||||||+|||+|+.+|. .+++.+ +.+|++++ |+++++++|.++
T Consensus 652 v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~-~EiV~d---g~~Gllv~p~D~e~LA~aI~~l 727 (816)
T 3s28_A 652 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGP-AEIIVH---GKSGFHIDPYHGDQAADTLADF 727 (816)
T ss_dssp HHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTH-HHHCCB---TTTBEEECTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCCh-HHHHcc---CCcEEEeCCCCHHHHHHHHHHH
Confidence 4589999998 679999999999999999999999999999999998 789988 89999987 999999999776
Q ss_pred H----cCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHH
Q 012436 421 I----SMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 421 ~----~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~ 458 (464)
+ . |++.++++++++++.+ ++|||+.+++++.++|+..
T Consensus 728 L~~Ll~-d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 728 FTKCKE-DPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp HHHHHH-CTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHhcc-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6 8 9999999999999999 9999999999999999865
No 8
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=4.2e-41 Score=328.24 Aligned_cols=356 Identities=13% Similarity=0.063 Sum_probs=267.4
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||+++++..+..||+++++..++++|.+. |+|+++.+..... ........+........ .
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~----------------~~~~~~~~~~~~~~~~~--~ 61 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGR----------------SVHANIEEFDAQTAEHV--R 61 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSC----------------CSCSSSEEEEHHHHHHH--T
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCc----------------ccccccccCCccccccc--c
Confidence 899999988887899999999999999999 8777766543210 00000010000000000 0
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch-hhhccCc----eEEEEeeCCcchhhhhhcccccccccC
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LARIFGC----RVICYTHYPTISLDMISRVREGSSMYN 189 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~-~~~~~~~----p~v~~~h~p~~~~~~~~~~~~~~~~~~ 189 (464)
.+. ........+.+.+++.+||+||.+........ +++..++ +.+.+.|....
T Consensus 62 ~~~------~~~~~~~~l~~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 119 (413)
T 3oy2_A 62 GLN------EQGFYYSGLSEFIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSK---------------- 119 (413)
T ss_dssp TCC------STTCCHHHHHHHHHHHCCSEEEEEECHHHHHHHHHHGGGCCSCCEEEEEECCCSB----------------
T ss_pred ccc------cccchHHHHHHHHHhcCCCEEEEcchHHHHHHHHHHhccCCCCCceeeeccccch----------------
Confidence 000 00011234456678889999997744333222 3334444 44555552110
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHhhcCC--EEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCC--CCC
Q 012436 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCAD--LAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP--LER 265 (464)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~--~~~ 265 (464)
..... .+..++.+| .++++|+..++.+.+ ++.+.++.++|||+|.+.+.... ...
T Consensus 120 ---------~~~~~-----------~~~~~~~~~~~~ii~~S~~~~~~~~~-~~~~~~~~vi~ngvd~~~~~~~~~~~~~ 178 (413)
T 3oy2_A 120 ---------NIREN-----------LWWIFSHPKVVGVMAMSKCWISDICN-YGCKVPINIVSHFVDTKTIYDARKLVGL 178 (413)
T ss_dssp ---------SCCGG-----------GGGGGGCTTEEEEEESSTHHHHHHHH-TTCCSCEEECCCCCCCCCCTTHHHHTTC
T ss_pred ---------hhHHH-----------HHHHHhccCCceEEEcCHHHHHHHHH-cCCCCceEEeCCCCCHHHHHHHHHhcCC
Confidence 00000 145568888 999999999999998 45578999999999998763211 111
Q ss_pred CC--CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCc------
Q 012436 266 ST--EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGN------ 337 (464)
Q Consensus 266 ~~--~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~------ 337 (464)
++ +.++++|+|++.+.||++.+++|+..+.++. |+++|+|+|+++........+.++++++++|+.++
T Consensus 179 ~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~----~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~ 254 (413)
T 3oy2_A 179 SEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKY----PDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNK 254 (413)
T ss_dssp GGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHC----TTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTT
T ss_pred CcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhC----CCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccc
Confidence 12 6789999999999999999999999998876 69999999998765444455788999999999886
Q ss_pred -EEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccc-------------
Q 012436 338 -VEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQT------------- 403 (464)
Q Consensus 338 -v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~------------- 403 (464)
+.+.|+++++++.++|++||++++||..|+||++++|||++|+|||+|+.+|. .|++.+ +.+
T Consensus 255 vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~-~e~v~~---~~~~~i~~~~~~~~~~ 330 (413)
T 3oy2_A 255 IMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGA-DDYFSG---DCVYKIKPSAWISVDD 330 (413)
T ss_dssp EEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHH-HHHSCT---TTSEEECCCEEEECTT
T ss_pred eeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCCh-HHHHcc---Cccccccccccccccc
Confidence 88889999999999999999999999999999999999999999999999988 788877 665
Q ss_pred --ee--ecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhhc
Q 012436 404 --GF--LAQ--NAEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 404 --g~--~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
|+ +++ |+++++++| ++++ |++.++++++++++.+ ++|||+.+++++.++|+++++++
T Consensus 331 ~~G~~gl~~~~d~~~la~~i-~l~~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 394 (413)
T 3oy2_A 331 RDGIGGIEGIIDVDDLVEAF-TFFK-DEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVE 394 (413)
T ss_dssp TCSSCCEEEECCHHHHHHHH-HHTT-SHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC--
T ss_pred ccCcceeeCCCCHHHHHHHH-HHhc-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 77 775 999999999 9999 9999999999999999 89999999999999999998754
No 9
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=3.2e-41 Score=329.38 Aligned_cols=356 Identities=17% Similarity=0.191 Sum_probs=259.8
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHH---HHHhhc-CcccCCCceeeeeec
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLA---RAVDRF-GVELLHPPKVVHLYR 107 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~ 107 (464)
.++|||+++.+.. .+||+++++.+++++|.+.||++++++.... ....+ .....+ +. ..+.+..
T Consensus 38 ~~~mkIl~v~~~~-~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~ 105 (416)
T 2x6q_A 38 LKGRSFVHVNSTS-FGGGVAEILHSLVPLLRSIGIEARWFVIEGP-----TEFFNVTKTFHNALQGN------ESLKLTE 105 (416)
T ss_dssp TTTCEEEEEESCS-SSSTHHHHHHHHHHHHHHTTCEEEEEECCCC-----HHHHHHHHHHHHHHTTC------CSCCCCH
T ss_pred hhccEEEEEeCCC-CCCCHHHHHHHHHHHHHhCCCeEEEEEccCC-----cchhhhhcccceeeccc------ccccccH
Confidence 3569999999875 4469999999999999999965555444322 11111 111100 11 0010000
Q ss_pred ccccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch-hhhccCceEEEEeeCCcchhhhhhccccccc
Q 012436 108 RKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LARIFGCRVICYTHYPTISLDMISRVREGSS 186 (464)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~-~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~ 186 (464)
. . ............+.+++.+||+||.+......+. +++ .++|+|+++|.....
T Consensus 106 ~---------~---~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~------------ 160 (416)
T 2x6q_A 106 E---------M---KELYLNVNRENSKFIDLSSFDYVLVHDPQPAALIEFYE-KKSPWLWRCHIDLSS------------ 160 (416)
T ss_dssp H---------H---HHHHHHHHHHHHHSSCGGGSSEEEEESSTTGGGGGGSC-CCSCEEEECCSCCSS------------
T ss_pred H---------H---HHHHHHHHHHHHHHHhhcCCCEEEEeccchhhHHHHHH-hcCCEEEEEccccCC------------
Confidence 0 0 0001112233455677789999998776554433 222 338999999943210
Q ss_pred ccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEE-EcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC--
Q 012436 187 MYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAM-VNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL-- 263 (464)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi-~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~-- 263 (464)
... ..++ . .+..+..+|.++ ++|+..++. +. ..++.++|||+|...+...+.
T Consensus 161 ------------~~~----~~~~---~-~~~~~~~~~~~i~~~s~~~~~~----~~-~~~~~vi~ngvd~~~~~~~~~~~ 215 (416)
T 2x6q_A 161 ------------PNR----EFWE---F-LRRFVEKYDRYIFHLPEYVQPE----LD-RNKAVIMPPSIDPLSEKNVELKQ 215 (416)
T ss_dssp ------------CCH----HHHH---H-HHHHHTTSSEEEESSGGGSCTT----SC-TTTEEECCCCBCTTSTTTSCCCH
T ss_pred ------------ccH----HHHH---H-HHHHHHhCCEEEEechHHHHhh----CC-ccceEEeCCCCChhhhcccccCh
Confidence 000 0111 1 133446777766 566655442 22 378999999999876542211
Q ss_pred ----------CCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcC
Q 012436 264 ----------ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELK 333 (464)
Q Consensus 264 ----------~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~ 333 (464)
...++.++++|+|++.+.||++.+++|++.+.++. |+++|+++|+++.. +..+.+.+++++++++
T Consensus 216 ~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~~-~~~~~~~l~~~~~~~~ 290 (416)
T 2x6q_A 216 TEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKI----PGVQLLLVGVMAHD-DPEGWIYFEKTLRKIG 290 (416)
T ss_dssp HHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHC----TTCEEEEEECCCTT-CHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhC----CCeEEEEEecCccc-chhHHHHHHHHHHHhC
Confidence 11245689999999999999999999999998876 68999999998753 2344577888999999
Q ss_pred CCCcEEEccCCC---hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCH
Q 012436 334 VDGNVEFYKNLL---YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNA 410 (464)
Q Consensus 334 l~~~v~~~g~~~---~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~ 410 (464)
+.++|.|+|+++ ++++.++|+.||++++||..|++|++++|||++|+|||+++.+|. .+++.+ +.+|++++|+
T Consensus 291 ~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~-~e~i~~---~~~g~l~~d~ 366 (416)
T 2x6q_A 291 EDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGI-KFQIVD---GETGFLVRDA 366 (416)
T ss_dssp TCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEEEESCHHH-HHHCCB---TTTEEEESSH
T ss_pred CCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEEEccCCCC-hhheec---CCCeEEECCH
Confidence 989999999664 689999999999999999999999999999999999999999887 788888 8899999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHH
Q 012436 411 EEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPIL 459 (464)
Q Consensus 411 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~ 459 (464)
++++++|.++++ |++.++++++++++.+ ++|+|+.+++++.++|++++
T Consensus 367 ~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 367 NEAVEVVLYLLK-HPEVSKEMGAKAKERVRKNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhh
Confidence 999999999999 9999999999999999 79999999999999998765
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1.6e-41 Score=326.80 Aligned_cols=353 Identities=15% Similarity=0.123 Sum_probs=261.8
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||+++++...+.||+++++.+++++|.+.||++. +++...... ...+++++.++...+..
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~--v~~~~~~~~---------------~~~~~~v~~~~~~~~~~-- 61 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVR--VYTQSWEGD---------------CPKAFELIQVPVKSHTN-- 61 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEE--EEESEECSC---------------CCTTCEEEECCCCCSSH--
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEE--EEecCCCCC---------------CCCCcEEEEEccCcccc--
Confidence 89999988765568999999999999999995555 444332100 01122444443322110
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (464)
..........+.+.+++.+||+||.+...+.... .++..++|.+.+.|..
T Consensus 62 -------~~~~~~~~~~l~~~i~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 113 (374)
T 2iw1_A 62 -------HGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGF--------------------- 113 (374)
T ss_dssp -------HHHHHHHHHHHHHHHHHSCCSEEEESSCCTTCSEEECCSCCHHHHHHHHCCH---------------------
T ss_pred -------hhhHHHHHHHHHHHHhccCCCEEEEecCCCCceeeeccccccceeeeecccc---------------------
Confidence 1111223445566788899999997765332211 1112223333222310
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhh--cCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCCCCCCCccCCCCC----
Q 012436 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGS--CADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLER---- 265 (464)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~d~~~~~~~~~~~---- 265 (464)
..... ...+.+.++++..++ .+|.++++|+..++.+.+.++. ..++.++|||+|.+.+.+.....
T Consensus 114 -------~~~~~-~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~ 185 (374)
T 2iw1_A 114 -------LYRLT-SRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREI 185 (374)
T ss_dssp -------HHHTS-HHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHH
T ss_pred -------hhhhc-HHHHHHHHHHHHHhhccCCcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHH
Confidence 00000 011233344555554 7999999999999999988776 57899999999988776433211
Q ss_pred -------CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcE
Q 012436 266 -------STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV 338 (464)
Q Consensus 266 -------~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v 338 (464)
.++.++++|+|++.+.||++.+++|++.+.+... |+++|+++|+++. ++++++++++++.++|
T Consensus 186 ~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~---~~~~l~i~G~g~~-------~~~~~~~~~~~~~~~v 255 (374)
T 2iw1_A 186 YRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLR---HNTLLFVVGQDKP-------RKFEALAEKLGVRSNV 255 (374)
T ss_dssp HHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHH---HTEEEEEESSSCC-------HHHHHHHHHHTCGGGE
T ss_pred HHHHhCCCCCCeEEEEeccchhhcCHHHHHHHHHHhHhccC---CceEEEEEcCCCH-------HHHHHHHHHcCCCCcE
Confidence 2456899999999999999999999999876511 4899999999763 5788888999998999
Q ss_pred EEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC---CHHHHHH
Q 012436 339 EFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ---NAEEYAD 415 (464)
Q Consensus 339 ~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~---~~~~la~ 415 (464)
+++|+. +++.++|+.||++++||..|++|++++|||++|+|||+++.++. .+++.+ +.+|++++ |++++++
T Consensus 256 ~~~g~~--~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~-~e~i~~---~~~g~~~~~~~~~~~l~~ 329 (374)
T 2iw1_A 256 HFFSGR--NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGY-AHYIAD---ANCGTVIAEPFSQEQLNE 329 (374)
T ss_dssp EEESCC--SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTT-THHHHH---HTCEEEECSSCCHHHHHH
T ss_pred EECCCc--ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecCCCc-hhhhcc---CCceEEeCCCCCHHHHHH
Confidence 999985 89999999999999999999999999999999999999999988 688888 88998874 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 012436 416 AIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPIL 459 (464)
Q Consensus 416 ~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 459 (464)
+|.++++ |++.++++++++++.+++++|+.+.+++.++++..+
T Consensus 330 ~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 372 (374)
T 2iw1_A 330 VLRKALT-QSPLRMAWAENARHYADTQDLYSLPEKAADIITGGL 372 (374)
T ss_dssp HHHHHHH-CHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHCC-
T ss_pred HHHHHHc-ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 9999999 999999999999999988899999999999988654
No 11
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=4.9e-40 Score=327.45 Aligned_cols=393 Identities=13% Similarity=0.058 Sum_probs=263.7
Q ss_pred ceEEEecCCCCC---CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHh-----hc----C--ccc----
Q 012436 35 TSVAFFHPNTND---GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD-----RF----G--VEL---- 96 (464)
Q Consensus 35 mkI~~~~~~~~~---~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~-----~~----~--~~~---- 96 (464)
|||+++++.+.+ .||+++++.+++++|.+.||+|+ +++... ......... .+ + ..+
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~--vi~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTR--TLIPGY----PAVKAAVTDPVKCFEFTDLLGEKADLLEVQ 74 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEE--EEEECC----HHHHHHCCSCEEEEEESCSSSCCEEEEEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEE--EEeccc----ccccccccccceeEEEEEecCCeEEEEEEE
Confidence 899999886644 48999999999999999995555 444332 111110000 00 0 000
Q ss_pred CCCceeeeeecccccccc--cCcc-----e-ehhhh---chhhhHHHHHHh-hhcCCcEEEecccccccch--hhhc--c
Q 012436 97 LHPPKVVHLYRRKWIEES--TYPR-----F-TMIGQ---SFGSVYLSWEAL-CKFTPLYYFDTSGYAFTYP--LARI--F 160 (464)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~--~~~~-----~-~~~~~---~~~~~~~~~~~l-~~~~~Dvv~~~~~~~~~~~--~~~~--~ 160 (464)
..+++++.++...+.... .+.. + ..... +........+.+ ++.+||+||.+.......+ +++. .
T Consensus 75 ~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~ 154 (485)
T 1rzu_A 75 HERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETP 154 (485)
T ss_dssp ETTEEEEEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHHHHHHHSSSC
T ss_pred ecCceEEEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHHHHHHhhcccC
Confidence 123345544432111100 1110 0 00000 011122222223 5779999998765443333 3333 7
Q ss_pred CceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHH-
Q 012436 161 GCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKL- 239 (464)
Q Consensus 161 ~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~- 239 (464)
++|+|+++|............ +... ......+.......+ ....+++..++.+|.++++|+..++.+.+.
T Consensus 155 ~~p~v~t~H~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~ 225 (485)
T 1rzu_A 155 EIPSLLTIHNIAFQGQFGANI------FSKL-ALPAHAFGMEGIEYY--NDVSFLKGGLQTATALSTVSPSYAEEILTAE 225 (485)
T ss_dssp CCCEEEEESCTTCCCEECGGG------GGGS-CCCGGGSSTTTTEET--TEEEHHHHHHHHCSEEEESCHHHHHHTTSHH
T ss_pred CCCEEEEecCccccCCCCHHH------Hhhc-CCChhhccccccccc--ccccHHHHHHhhcCEEEecCHhHHHHHhccc
Confidence 999999999532100000000 0000 000000000000000 001234666789999999999999998764
Q ss_pred hC---------CCCCeEEecCCCCCCCCccCCCC--------------------------CCC-CCcEEEEEeccCCCCC
Q 012436 240 WG---------IPDRIKRVYPPCDTSGLQVLPLE--------------------------RST-EYPAIISVAQFRPEKA 283 (464)
Q Consensus 240 ~~---------~~~~i~~i~~~~d~~~~~~~~~~--------------------------~~~-~~~~i~~~G~~~~~K~ 283 (464)
++ ...++.+||||+|.+.+.+.... .++ +.++++|+|++.+.||
T Consensus 226 ~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg 305 (485)
T 1rzu_A 226 FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKG 305 (485)
T ss_dssp HHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTT
T ss_pred cCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCccccC
Confidence 33 25789999999998877643211 011 2569999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEE-EccCCChhHHHHHHhcCcEEEEc
Q 012436 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE-FYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
++.+++|+..+.+. +++|+|+|+|+. .+.+.+++++++++ ++|. +.|+ +.+++.++|+.||++|+|
T Consensus 306 ~~~li~a~~~l~~~------~~~l~ivG~g~~----~~~~~l~~~~~~~~--~~v~~~~g~-~~~~~~~~~~~adv~v~p 372 (485)
T 1rzu_A 306 IDLMAEAVDEIVSL------GGRLVVLGAGDV----ALEGALLAAASRHH--GRVGVAIGY-NEPLSHLMQAGCDAIIIP 372 (485)
T ss_dssp HHHHHTTHHHHHHT------TCEEEEEECBCH----HHHHHHHHHHHHTT--TTEEEEESC-CHHHHHHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHHhc------CceEEEEeCCch----HHHHHHHHHHHhCC--CcEEEecCC-CHHHHHHHHhcCCEEEEC
Confidence 99999999998763 899999999852 35578888888875 6887 7888 788889999999999999
Q ss_pred CCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCc---------cceeecC--CHHHHHHHHHHHH---cCCHHHH
Q 012436 363 MIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQ---------QTGFLAQ--NAEEYADAIVKII---SMPETER 428 (464)
Q Consensus 363 s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~---------~~g~~~~--~~~~la~~i~~l~---~~~~~~~ 428 (464)
|..|+||++++|||+||+|||+|+.+|. .|++.+ + .+|++++ |+++++++|.+++ + |++.+
T Consensus 373 S~~E~~~~~~lEAma~G~PvI~s~~gg~-~e~v~~---~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~-~~~~~ 447 (485)
T 1rzu_A 373 SRFEPCGLTQLYALRYGCIPVVARTGGL-ADTVID---ANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYH-DPKLW 447 (485)
T ss_dssp CSCCSSCSHHHHHHHHTCEEEEESSHHH-HHHCCB---CCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHT-CHHHH
T ss_pred cccCCCCHHHHHHHHCCCCEEEeCCCCh-hheecc---cccccccccCCcceEeCCCCHHHHHHHHHHHHHHhC-CHHHH
Confidence 9999999999999999999999999988 788888 7 8999986 9999999999999 8 99999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhc
Q 012436 429 LEMAAAARRRAARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 429 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
+++++++++ ++|||+.+++++.++|++++.++
T Consensus 448 ~~~~~~~~~--~~fs~~~~~~~~~~~y~~~~~~~ 479 (485)
T 1rzu_A 448 TQMQKLGMK--SDVSWEKSAGLYAALYSQLISKG 479 (485)
T ss_dssp HHHHHHHHT--CCCBHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHH--HhCChHHHHHHHHHHHHHhhCCC
Confidence 999998875 88999999999999999988754
No 12
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=4.1e-39 Score=320.78 Aligned_cols=393 Identities=16% Similarity=0.083 Sum_probs=264.0
Q ss_pred ceEEEecCCCCC---CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHh--------hcC--ccc----C
Q 012436 35 TSVAFFHPNTND---GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD--------RFG--VEL----L 97 (464)
Q Consensus 35 mkI~~~~~~~~~---~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~--------~~~--~~~----~ 97 (464)
|||+++++.+.+ .||+++++.+++++|.+.||+|+ +++... ......... .++ ..+ .
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~--vi~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDAR--VLLPAF----PDIRRGVTDAQVVSRRDTFAGHITLLFGHY 74 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEE--EEEECC----HHHHHHCTTCEEEEEECCTTCCEEEEEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEE--EEecCc----cccccccccceeEEEecccCCcEEEEEEEE
Confidence 899999886543 48999999999999999995554 444332 111110000 000 000 1
Q ss_pred CCceeeeeecccccccc--cCcc-----e-ehhhhchhhhHHHHHHhh----hcCCcEEEecccccccch--hh-hccCc
Q 012436 98 HPPKVVHLYRRKWIEES--TYPR-----F-TMIGQSFGSVYLSWEALC----KFTPLYYFDTSGYAFTYP--LA-RIFGC 162 (464)
Q Consensus 98 ~~~~~~~~~~~~~~~~~--~~~~-----~-~~~~~~~~~~~~~~~~l~----~~~~Dvv~~~~~~~~~~~--~~-~~~~~ 162 (464)
.+++++.++...+.... .+.. + ............+.+.++ +.+||+||.+.......+ ++ +..++
T Consensus 75 ~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~~~~~~~~~~~~ 154 (485)
T 2qzs_A 75 NGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPA 154 (485)
T ss_dssp TTEEEEEEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTHHHHHHHTTCSS
T ss_pred CCcEEEEEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHHHHHHhhccCCC
Confidence 23355554432111110 0110 0 000000111223334444 378999998775544433 33 56799
Q ss_pred eEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHH-hC
Q 012436 163 RVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKL-WG 241 (464)
Q Consensus 163 p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~-~~ 241 (464)
|+|+++|............ +... ......+....... ....++++..++.+|.++++|+..++.+.+. ++
T Consensus 155 p~v~t~H~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~ 225 (485)
T 2qzs_A 155 KSVFTVHNLAYQGMFYAHH------MNDI-QLPWSFFNIHGLEF--NGQISFLKAGLYYADHITAVSPTYAREITEPQFA 225 (485)
T ss_dssp EEEEEESCTTCCCEEEGGG------GGTT-TCCGGGCSTTTTEE--TTEEEHHHHHHHHCSEEEESSHHHHHHTTSHHHH
T ss_pred CEEEEecCccccCCCCHHH------HHhc-CCCchhcccccccc--cccccHHHHHHHhcCeEEecCHHHHHHHhccccC
Confidence 9999999532100000000 0000 00000000000000 0001234666789999999999999998764 33
Q ss_pred C---------C--CCeEEecCCCCCCCCccCCCC--------------------------CC--CCCcEEEEEeccCCCC
Q 012436 242 I---------P--DRIKRVYPPCDTSGLQVLPLE--------------------------RS--TEYPAIISVAQFRPEK 282 (464)
Q Consensus 242 ~---------~--~~i~~i~~~~d~~~~~~~~~~--------------------------~~--~~~~~i~~~G~~~~~K 282 (464)
. . .++.+||||+|.+.+.+.... .+ ++.++++|+|++.+.|
T Consensus 226 ~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~K 305 (485)
T 2qzs_A 226 YGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQK 305 (485)
T ss_dssp TTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGG
T ss_pred cchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCcccc
Confidence 2 1 789999999998877643211 01 2568999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEE-EccCCChhHHHHHHhcCcEEEE
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE-FYKNLLYRDLVKLLGGAVVGIH 361 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~~~~~~l~~ad~~v~ 361 (464)
|++.+++|++.+.+. +++|+|+|+|+. .+.+.+++++++++ ++|. +.|+ +.+++.++|+.||++|+
T Consensus 306 g~~~li~a~~~l~~~------~~~l~ivG~g~~----~~~~~l~~~~~~~~--~~v~~~~g~-~~~~~~~~~~~adv~v~ 372 (485)
T 2qzs_A 306 GLDLVLEALPGLLEQ------GGQLALLGAGDP----VLQEGFLAAAAEYP--GQVGVQIGY-HEAFSHRIMGGADVILV 372 (485)
T ss_dssp CHHHHHHHHHHHHHT------TCEEEEEEEECH----HHHHHHHHHHHHST--TTEEEEESC-CHHHHHHHHHHCSEEEE
T ss_pred CHHHHHHHHHHHhhC------CcEEEEEeCCch----HHHHHHHHHHHhCC--CcEEEeCCC-CHHHHHHHHHhCCEEEE
Confidence 999999999998762 899999998752 35578888888875 6786 7888 78888999999999999
Q ss_pred cCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCc---------cceeecC--CHHHHHHHHHHHH---cCCHHH
Q 012436 362 SMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQ---------QTGFLAQ--NAEEYADAIVKII---SMPETE 427 (464)
Q Consensus 362 ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~---------~~g~~~~--~~~~la~~i~~l~---~~~~~~ 427 (464)
||..|+||++++|||+||+|||+|+.+|. .|++.+ + .+|++++ |+++++++|.+++ + |++.
T Consensus 373 pS~~E~~g~~~lEAma~G~PvI~s~~gg~-~e~v~~---~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~-~~~~ 447 (485)
T 2qzs_A 373 PSRFEPCGLTQLYGLKYGTLPLVRRTGGL-ADTVSD---CSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWS-RPSL 447 (485)
T ss_dssp CCSCCSSCSHHHHHHHHTCEEEEESSHHH-HHHCCB---CCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHT-SHHH
T ss_pred CCccCCCcHHHHHHHHCCCCEEECCCCCc-cceecc---CccccccccccceEEECCCCHHHHHHHHHHHHHHcC-CHHH
Confidence 99999999999999999999999999988 788888 7 7999986 9999999999999 8 9999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhc
Q 012436 428 RLEMAAAARRRAARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 428 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
++++++++++ ++|||+.+++++.++|++++...
T Consensus 448 ~~~~~~~~~~--~~fs~~~~~~~~~~ly~~~~~~~ 480 (485)
T 2qzs_A 448 WRFVQRQAMA--MDFSWQVAAKSYRELYYRLKLEH 480 (485)
T ss_dssp HHHHHHHHHH--CCCCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHh--hcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999998875 89999999999999999987543
No 13
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=2.1e-38 Score=301.22 Aligned_cols=313 Identities=16% Similarity=0.088 Sum_probs=244.4
Q ss_pred ccceEEEecCC-----------CCC--CCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCC
Q 012436 33 RTTSVAFFHPN-----------TND--GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHP 99 (464)
Q Consensus 33 ~~mkI~~~~~~-----------~~~--~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (464)
++|||+++.+. +++ .||+++++.+++++|.+.| ++|.+++........ .++
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G--~~v~v~~~~~~~~~~---------~~~----- 65 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELG--HEVFLLGAPGSPAGR---------PGL----- 65 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTT--CEEEEESCTTSCCCS---------TTE-----
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcC--CeEEEEecCCCCCCC---------Ccc-----
Confidence 35999999887 222 3899999999999999999 566666654311110 011
Q ss_pred ceeeeeecccccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEeeCCcchhhhhh
Q 012436 100 PKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMIS 179 (464)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~ 179 (464)
.++.. . ....+.+.+++.+||+||.+....... .++..++| |+++|....
T Consensus 66 -~~~~~--~-------------------~~~~l~~~l~~~~~Dvi~~~~~~~~~~-~~~~~~~p-v~~~h~~~~------ 115 (342)
T 2iuy_A 66 -TVVPA--G-------------------EPEEIERWLRTADVDVVHDHSGGVIGP-AGLPPGTA-FISSHHFTT------ 115 (342)
T ss_dssp -EECSC--C-------------------SHHHHHHHHHHCCCSEEEECSSSSSCS-TTCCTTCE-EEEEECSSS------
T ss_pred -eeccC--C-------------------cHHHHHHHHHhcCCCEEEECCchhhHH-HHhhcCCC-EEEecCCCC------
Confidence 11110 0 012455668888999999877654432 45678999 999994321
Q ss_pred cccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCc
Q 012436 180 RVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQ 259 (464)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~ 259 (464)
. . ..+|.++++|+..++.+.+ ..++.++|||+|.+.+.
T Consensus 116 ~----------------~----------------------~~~d~ii~~S~~~~~~~~~----~~~~~vi~ngvd~~~~~ 153 (342)
T 2iuy_A 116 R----------------P----------------------VNPVGCTYSSRAQRAHCGG----GDDAPVIPIPVDPARYR 153 (342)
T ss_dssp B----------------C----------------------SCCTTEEESCHHHHHHTTC----CTTSCBCCCCBCGGGSC
T ss_pred C----------------c----------------------ccceEEEEcCHHHHHHHhc----CCceEEEcCCCChhhcC
Confidence 0 0 1289999999999998866 57888999999988776
Q ss_pred cCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEE
Q 012436 260 VLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE 339 (464)
Q Consensus 260 ~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~ 339 (464)
+.... ..+.++++|+|++.+.||++.+++|++.+ +++|+++|+|+.. +.+++++++++ ++|+
T Consensus 154 ~~~~~-~~~~~~i~~vG~~~~~Kg~~~li~a~~~~---------~~~l~i~G~g~~~------~~l~~~~~~~~--~~v~ 215 (342)
T 2iuy_A 154 SAADQ-VAKEDFLLFMGRVSPHKGALEAAAFAHAC---------GRRLVLAGPAWEP------EYFDEITRRYG--STVE 215 (342)
T ss_dssp CSTTC-CCCCSCEEEESCCCGGGTHHHHHHHHHHH---------TCCEEEESCCCCH------HHHHHHHHHHT--TTEE
T ss_pred ccccc-CCCCCEEEEEeccccccCHHHHHHHHHhc---------CcEEEEEeCcccH------HHHHHHHHHhC--CCEE
Confidence 43332 23457899999999999999999999987 7899999998643 66777777776 7999
Q ss_pred EccCCChhHHHHHHhcCcEEEEcCC----------CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-
Q 012436 340 FYKNLLYRDLVKLLGGAVVGIHSMI----------DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ- 408 (464)
Q Consensus 340 ~~g~~~~~~~~~~l~~ad~~v~ps~----------~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~- 408 (464)
|+|+++++++.++|++||++++||. .|++|++++|||++|+|||+++.++. .|++.+. ++.+|++++
T Consensus 216 ~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~-~e~~~~~-~~~~g~~~~~ 293 (342)
T 2iuy_A 216 PIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCL-AEIVPSV-GEVVGYGTDF 293 (342)
T ss_dssp ECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTH-HHHGGGG-EEECCSSSCC
T ss_pred EeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCCh-HHHhccc-CCCceEEcCC
Confidence 9999999999999999999999999 89999999999999999999999988 6776420 025889988
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhhc
Q 012436 409 NAEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 409 ~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
|+++++++|.++++ ++++++.+ ++|+|+.+++++.++|+++++++
T Consensus 294 d~~~l~~~i~~l~~---------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (342)
T 2iuy_A 294 APDEARRTLAGLPA---------SDEVRRAAVRLWGHVTIAERYVEQYRRLLAGA 339 (342)
T ss_dssp CHHHHHHHHHTSCC---------HHHHHHHHHHHHBHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHccC
Confidence 99999999998863 56778888 89999999999999999998764
No 14
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=5.4e-38 Score=312.68 Aligned_cols=228 Identities=15% Similarity=0.116 Sum_probs=186.7
Q ss_pred HHHHHhhcCCEEEEcCHHHHHHHHHHhCC---------CCCeEEecCCCCCCCCccCCC---------------------
Q 012436 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGI---------PDRIKRVYPPCDTSGLQVLPL--------------------- 263 (464)
Q Consensus 214 ~~~~~~~~ad~vi~~S~~~~~~~~~~~~~---------~~~i~~i~~~~d~~~~~~~~~--------------------- 263 (464)
+.+..+..||.|+++|+..++.+.+.++. ..++.+|+||+|.+.+.+...
T Consensus 234 ~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~ 313 (536)
T 3vue_A 234 WMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKE 313 (536)
T ss_dssp HHHHHHHHCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHhccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHH
Confidence 34667789999999999999998765431 468999999999988864211
Q ss_pred --------CCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC
Q 012436 264 --------ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD 335 (464)
Q Consensus 264 --------~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~ 335 (464)
..+++.++|+|+||+.+.||++.+++|+.++.++ +.+++++|.|.. .....++.....+ .
T Consensus 314 ~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~------~~~l~l~G~G~~----~~~~~~~~~~~~~--~ 381 (536)
T 3vue_A 314 ALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE------DVQIVLLGTGKK----KFEKLLKSMEEKY--P 381 (536)
T ss_dssp HHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTS------SCEEEEECCBCH----HHHHHHHHHHHHS--T
T ss_pred HHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhh------CCeEEEEeccCc----hHHHHHHHHHhhc--C
Confidence 1124568999999999999999999999998653 789999998853 3335555555554 5
Q ss_pred CcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCcccee----------
Q 012436 336 GNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGF---------- 405 (464)
Q Consensus 336 ~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~---------- 405 (464)
.++.+.+..+.+++..+|+.||++++||.+|+||++++|||+||+|||+|+.||. .|++.+ +.+|+
T Consensus 382 ~~v~~~~~~~~~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~-~e~V~d---g~~G~~~~~~~~~g~ 457 (536)
T 3vue_A 382 GKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGL-VDTVIE---GKTGFHMGRLSVDCK 457 (536)
T ss_dssp TTEEEECSCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHH-HHHCCB---TTTEEECCCCCSCTT
T ss_pred CceEEEEeccHHHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCc-hheeeC---CCCccccccCCCcee
Confidence 6899999999999999999999999999999999999999999999999999999 789988 88887
Q ss_pred ecC--CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 012436 406 LAQ--NAEEYADAIVKIIS-MPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPIL 459 (464)
Q Consensus 406 ~~~--~~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 459 (464)
+++ |+++++++|.++++ .+.+.++++.+++.+ ++|||++.+++|.++|+++.
T Consensus 458 l~~~~d~~~la~ai~ral~~~~~~~~~~~~~~am~--~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 458 VVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMN--QDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH--SCCSSHHHHHHHHHHHHTTC
T ss_pred EECCCCHHHHHHHHHHHHHhcCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHhh
Confidence 454 89999999988764 133456666665532 78999999999999999864
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=1.7e-35 Score=286.38 Aligned_cols=351 Identities=15% Similarity=0.084 Sum_probs=228.3
Q ss_pred cccccccceEEEecCCCCCC--CCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeee
Q 012436 28 NARRNRTTSVAFFHPNTNDG--GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHL 105 (464)
Q Consensus 28 ~~~~~~~mkI~~~~~~~~~~--GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (464)
+..+.++|||+++++.+.++ .|+.+.+.+++++|.+.| ++|.+++..... .. ... ... . ...+..+
T Consensus 40 ~~~~~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~G--heV~Vvt~~~~~--~~--~~~-~~~----~-~~~~~~~ 107 (413)
T 2x0d_A 40 RTSSIKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKK--FKKRIILTDATP--NP--KDL-QSF----K-SFKYVMP 107 (413)
T ss_dssp EECCCCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTT--CEEEEEESSCCC--CH--HHH-GGG----T-TSEECCT
T ss_pred ccCCCCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcC--CceEEEEecCCC--Ch--HHH-Hhh----h-ccceeec
Confidence 45556889999999988875 255567889999999999 455555554321 11 111 111 0 0011000
Q ss_pred ecccccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhc----------cCceEEEEeeCCcchh
Q 012436 106 YRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARI----------FGCRVICYTHYPTISL 175 (464)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~----------~~~p~v~~~h~p~~~~ 175 (464)
..... ..++. ..+.. .....+...++|+||.+....... ..+. .+.|.+..+|...
T Consensus 108 ~~~~~----~~~~i---~~~~~---~~~~~~~~~~~Dvv~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~--- 173 (413)
T 2x0d_A 108 EEDKD----FALQI---VPFND---RYNRTIPVAKHDIFIATAWWTAYA-AQRIVSWQSDTYGIPPNKILYIIQDFE--- 173 (413)
T ss_dssp TCCCC----CSEEE---EECSC---CTTCCEEECTTEEEEECSHHHHHH-HHHHHHHHHHHHTCCCCCEEEEECSCG---
T ss_pred cCCcc----cccee---eeccc---cccccccCCCCCEEEEehHHHHHH-HHHhhhhhhhhcccccCcEEEEEeech---
Confidence 00000 00000 00000 000112234799999775433221 1111 2457777666211
Q ss_pred hhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCC--EEEEcCHHHHHHHHHHhCC-CCCeEEecCC
Q 012436 176 DMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCAD--LAMVNSSWTQSHIEKLWGI-PDRIKRVYPP 252 (464)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~ 252 (464)
.... .+.. ...+.+..++.++ .++++|+++++.+.+. +. ..++.+++||
T Consensus 174 ---~~~~---------------~~~~---------~~~~~~~~~~~~~~~~vi~~S~~~~~~l~~~-g~~~~~~~~i~~g 225 (413)
T 2x0d_A 174 ---PGFY---------------QWSS---------QYVLAESTYKYRGPQIAVFNSELLKQYFNNK-GYNFTDEYFFQPK 225 (413)
T ss_dssp ---GGGS---------------CSSH---------HHHHHHHTTSCCSCEEEEEESHHHHHHHHHH-TCCCSEEEEECCC
T ss_pred ---hhcC---------------ccCh---------HHHHHHHHhccCCceEEEEcCHHHHHHHHHc-CCCCCceEEeCCC
Confidence 0000 0000 0112345556665 5899999999999886 33 3578899999
Q ss_pred CCCCCCccCCCCCCCCCcEEEEEecc-CCCCChHHHHHHHHHHHHHhcCCCCC---cEEEEEcCCCCCccHHHHHHHHHH
Q 012436 253 CDTSGLQVLPLERSTEYPAIISVAQF-RPEKAHPLQLEAFSVALRKLDADLPR---PRLQFVGSCRNKSDEERLQSLKDK 328 (464)
Q Consensus 253 ~d~~~~~~~~~~~~~~~~~i~~~G~~-~~~K~~~~ll~a~~~l~~~~~~~~p~---~~l~i~G~~~~~~~~~~~~~l~~~ 328 (464)
+|.+.+..... ..++...++++||+ .+.||++.+++|++.+.++. |+ ++|+++|+++..
T Consensus 226 ~d~~~~~~~~~-~~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~~~----~~~~~~~l~ivG~~~~~------------ 288 (413)
T 2x0d_A 226 INTTLKNYIND-KRQKEKIILVYGRPSVKRNAFTLIVEALKIFVQKY----DRSNEWKIISVGEKHKD------------ 288 (413)
T ss_dssp CCHHHHTTTTS-CCCCCSEEEEEECTTCGGGCHHHHHHHHHHHHHHC----TTGGGCEEEEEESCCCC------------
T ss_pred cCchhhccccc-ccCCCCEEEEEecCchhccCHHHHHHHHHHHHHhC----CCCCceEEEEEcCCchh------------
Confidence 98764432111 22345688999996 68899999999999998765 44 899999998643
Q ss_pred HHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC
Q 012436 329 SIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ 408 (464)
Q Consensus 329 ~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~ 408 (464)
.++++.++|+|+|+++.+|+.++|++||++++||..|+||++++||||||+|||+++ +|. .|++.+ +.+|++++
T Consensus 289 -~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~~-~g~-~e~v~~---~~~G~lv~ 362 (413)
T 2x0d_A 289 -IALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVITNK-YEN-KDLSNW---HSNIVSLE 362 (413)
T ss_dssp -EEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEEC-BTT-BCGGGT---BTTEEEES
T ss_pred -hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEeC-CCc-chhhhc---CCCEEEeC
Confidence 245667799999999999999999999999999999999999999999999999965 555 688888 88998875
Q ss_pred --CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 012436 409 --NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 409 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
|+++++++|.++++ |++.+++ ++++.+++|+|+...++ .++|+++..
T Consensus 363 ~~d~~~la~ai~~ll~-~~~~~~~---~~~~~~~~~~W~~~~~~-~~~~~~l~~ 411 (413)
T 2x0d_A 363 QLNPENIAETLVELCM-SFNNRDV---DKKESSNMMFYINEFNE-FSFIKEIEE 411 (413)
T ss_dssp SCSHHHHHHHHHHHHH-HTC----------CCBSCGGGCCCC----TTHHHHHT
T ss_pred CCCHHHHHHHHHHHHc-CHHHHHH---hHHHHHHhCCHHHHHHH-HHHHHHHHh
Confidence 99999999999999 8887766 55555578999999887 677776654
No 16
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=100.00 E-value=2.4e-34 Score=278.56 Aligned_cols=244 Identities=14% Similarity=0.073 Sum_probs=187.9
Q ss_pred CCcEEEecccccccc-hhhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHH
Q 012436 140 TPLYYFDTSGYAFTY-PLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLV 218 (464)
Q Consensus 140 ~~Dvv~~~~~~~~~~-~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (464)
++|+||...+....+ .+++..++|++++.|....... . . ......+.++..
T Consensus 124 ~~DvIh~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~----------------------~-~-----~~~~~~~~~~~~ 175 (406)
T 2hy7_A 124 ESDVIVFESGIAVAFIELAKRVNPAAKLVYRASDGLST----------------------I-N-----VASYIEREFDRV 175 (406)
T ss_dssp HCSEEEEESSGGGGGHHHHHHHCTTSEEEEEESSCHHH----------------------H-T-----CCHHHHHHHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHhCCCEEEEEeccchhhc----------------------c-c-----ccHHHHHHHHHH
Confidence 689999444433321 3566789999999994321000 0 0 011223456778
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHh
Q 012436 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKL 298 (464)
Q Consensus 219 ~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~ 298 (464)
++.+|.++++|+..++.+.+.+ ++.+||||+|.+.+.+......+++++++|+|++.+.||+ +..+.+..
T Consensus 176 ~~~ad~vi~~S~~~~~~~~~~~----~i~vipngvd~~~f~~~~~~~~~~~~~i~~vGrl~~~Kg~------~~~l~~~~ 245 (406)
T 2hy7_A 176 APTLDVIALVSPAMAAEVVSRD----NVFHVGHGVDHNLDQLGDPSPYAEGIHAVAVGSMLFDPEF------FVVASKAF 245 (406)
T ss_dssp GGGCSEEEESCGGGGGGCSCST----TEEECCCCBCTTHHHHHCSCSCCSSEEEEEECCTTBCHHH------HHHHHHHC
T ss_pred HHhCCEEEEcCHHHHHHHHhcC----CEEEEcCCcChHhcCcccccccCCCcEEEEEeccccccCH------HHHHHHhC
Confidence 8999999999999998876542 8999999999887754322222334799999999999998 33344443
Q ss_pred cCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHH--
Q 012436 299 DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM-- 376 (464)
Q Consensus 299 ~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~-- 376 (464)
|+++|+|+|+|+ ++++++.++|.|+|+++++++.++|++||++++||..|++|++++|||
T Consensus 246 ----~~~~l~ivG~g~--------------~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~K 307 (406)
T 2hy7_A 246 ----PQVTFHVIGSGM--------------GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMK 307 (406)
T ss_dssp ----TTEEEEEESCSS--------------CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHH
T ss_pred ----CCeEEEEEeCch--------------HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHH
Confidence 699999999874 456677889999999999999999999999999999999999999999
Q ss_pred -----HhCCcEEEeCCCCCccceecccCCccceee-cC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHH
Q 012436 377 -----AAGAIPIAHNSAGPKMDIVLEEDGQQTGFL-AQ--NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFY 448 (464)
Q Consensus 377 -----a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~-~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 448 (464)
|||+|||+|+. +.+ +.+|++ ++ |+++++++|.++++ |++ ++..++|+|+.++
T Consensus 308 l~eYla~G~PVIas~~-------v~~---~~~G~l~v~~~d~~~la~ai~~ll~-~~~---------~~~~~~~sw~~~a 367 (406)
T 2hy7_A 308 LLQYDFFGLPAVCPNA-------VVG---PYKSRFGYTPGNADSVIAAITQALE-APR---------VRYRQCLNWSDTT 367 (406)
T ss_dssp HHHHHHHTCCEEEEGG-------GTC---SCSSEEEECTTCHHHHHHHHHHHHH-CCC---------CCCSCCCBHHHHH
T ss_pred HHHHhhCCCcEEEehh-------ccc---CcceEEEeCCCCHHHHHHHHHHHHh-Ccc---------hhhhhcCCHHHHH
Confidence 99999999986 445 678888 65 99999999999999 876 1223789999999
Q ss_pred HHHHHH--HHHHH
Q 012436 449 EDFKAA--IRPIL 459 (464)
Q Consensus 449 ~~~~~~--~~~~~ 459 (464)
+++.++ |+++.
T Consensus 368 ~~~~~~~~y~~~~ 380 (406)
T 2hy7_A 368 DRVLDPRAYPETR 380 (406)
T ss_dssp HHHHCGGGSGGGB
T ss_pred HHHHHhhcccccC
Confidence 999998 76543
No 17
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=2.2e-31 Score=270.23 Aligned_cols=330 Identities=12% Similarity=0.087 Sum_probs=239.4
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHH--hhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKA--IQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRR 108 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~--L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (464)
..++|||+++.+.+..+ |+++++..+++. +.+.| ++|++++.... ........... .+ .+..+.
T Consensus 202 ~~~~~rI~~~~~~~~~~-g~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~-~~~~~~~~~~~-~~-------~~~~~~-- 267 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGAH-PTGLLTVALFEALQRRQPD--LQMHLFATSGD-DGSTLRTRLAQ-AS-------TLHDVT-- 267 (568)
T ss_dssp SSSCEEEEEEESCSSSS-HHHHHHHHHHHHHHHHCTT--EEEEEEESSCC-CSCHHHHHHHH-TS-------EEEECT--
T ss_pred CCCCeEEEEECcccccC-hHHHHHHHHHhhccCCccc--EEEEEEECCCC-CccHHHHHHHh-cC-------eEEECC--
Confidence 46789999999988765 899999999999 77777 67777765321 01222222211 00 111100
Q ss_pred cccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEeccccccc--chhhhccCceEEEEeeC-Ccchhhhhhcccccc
Q 012436 109 KWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFT--YPLARIFGCRVICYTHY-PTISLDMISRVREGS 185 (464)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~--~~~~~~~~~p~v~~~h~-p~~~~~~~~~~~~~~ 185 (464)
. .....+.+.+++.+||+||++.++... +.+......|++++.|. +...
T Consensus 268 ---------~--------~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 319 (568)
T 2vsy_A 268 ---------A--------LGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTS----------- 319 (568)
T ss_dssp ---------T--------CCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSSEEEEESSSSSCC-----------
T ss_pred ---------C--------CCHHHHHHHHHhCCCCEEEECCCCCCcchHHHHhcCCCceeEeeecCCccc-----------
Confidence 0 012345567888999999976554422 22222345677777762 2100
Q ss_pred cccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCc----cC
Q 012436 186 SMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQ----VL 261 (464)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~----~~ 261 (464)
. .. ...+..+|.++++|+..++ + .+++.+|||.++..... +.
T Consensus 320 ------------~-~~--------------~~~~~~~d~~i~~s~~~~~-----~--~~~i~~ipn~~~~~~~~~~~~~~ 365 (568)
T 2vsy_A 320 ------------G-AP--------------WMDYVLGDAFALPPALEPF-----Y--SEHVLRLQGAFQPSDTSRVVAEP 365 (568)
T ss_dssp ------------C-CT--------------TCCEEEECTTTSCTTTGGG-----C--SSEEEECSSCSCCCCTTCCCCCC
T ss_pred ------------C-CC--------------CceEEEECCCcCCcccccC-----C--cceeEcCCCcCCCCCCCCCCCCC
Confidence 0 00 0001357888888887654 3 37889999965543211 00
Q ss_pred CCCC---CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEc-CCCCCccHHHHHHHHHHHHhcCCC-C
Q 012436 262 PLER---STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVG-SCRNKSDEERLQSLKDKSIELKVD-G 336 (464)
Q Consensus 262 ~~~~---~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G-~~~~~~~~~~~~~l~~~~~~~~l~-~ 336 (464)
+... .++...++++|++.+ ||++.+++++..+.++. |+++|+|+| +|+ ..+++++.++++|+. +
T Consensus 366 ~~r~~~~~~~~~~v~~~g~~~~-K~~~~li~a~~~l~~~~----~~~~l~i~G~~g~------~~~~l~~~~~~~~l~~~ 434 (568)
T 2vsy_A 366 PSRTQCGLPEQGVVLCCFNNSY-KLNPQSMARMLAVLREV----PDSVLWLLSGPGE------ADARLRAFAHAQGVDAQ 434 (568)
T ss_dssp CCTGGGTCCTTSCEEEECCCGG-GCCHHHHHHHHHHHHHC----TTCEEEEECCSTT------HHHHHHHHHHHTTCCGG
T ss_pred CCccccCCCCCCEEEEeCCccc-cCCHHHHHHHHHHHHhC----CCcEEEEecCCHH------HHHHHHHHHHHcCCChh
Confidence 1000 123346779999999 99999999999998776 699999999 664 347899999999998 8
Q ss_pred cEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEE-------eCCC-------CCccceecccCCcc
Q 012436 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIA-------HNSA-------GPKMDIVLEEDGQQ 402 (464)
Q Consensus 337 ~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~-------~~~~-------~~~~~~v~~~~~~~ 402 (464)
+|+|+|+++++++.++|+.||++|+||.. ++|++++|||+||+|||+ |+.+ |. .+++.
T Consensus 435 ~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~-~e~v~------ 506 (568)
T 2vsy_A 435 RLVFMPKLPHPQYLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGL-DEMNV------ 506 (568)
T ss_dssp GEEEECCCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTC-GGGBC------
T ss_pred HEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCC-hhhhc------
Confidence 99999999999999999999999999998 999999999999999999 8877 55 34442
Q ss_pred ceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHhh
Q 012436 403 TGFLAQNAEEYADAIVKIISMPETERLEMAAAARRRA---ARFSEQRFYEDFKAAIRPILCH 461 (464)
Q Consensus 403 ~g~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~ 461 (464)
+|+++++++|.++++ |++.++++++++++.+ +.|+|+.+++++.++|++++..
T Consensus 507 -----~~~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~ 562 (568)
T 2vsy_A 507 -----ADDAAFVAKAVALAS-DPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARR 562 (568)
T ss_dssp -----SSHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHT
T ss_pred -----CCHHHHHHHHHHHhc-CHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 389999999999999 9999999999999988 6799999999999999998765
No 18
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=100.00 E-value=6.2e-32 Score=258.83 Aligned_cols=337 Identities=12% Similarity=0.049 Sum_probs=231.1
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
+|||+++... .||.++.+..++++|.+.| ++|.+++.... . . .......++ +++.++...+...
T Consensus 6 ~mkIl~~~~~---~gG~~~~~~~la~~L~~~G--~~V~v~~~~~~---~-~-~~~~~~~g~------~~~~~~~~~~~~~ 69 (364)
T 1f0k_A 6 GKRLMVMAGG---TGGHVFPGLAVAHHLMAQG--WQVRWLGTADR---M-E-ADLVPKHGI------EIDFIRISGLRGK 69 (364)
T ss_dssp -CEEEEECCS---SHHHHHHHHHHHHHHHTTT--CEEEEEECTTS---T-H-HHHGGGGTC------EEEECCCCCCTTC
T ss_pred CcEEEEEeCC---CccchhHHHHHHHHHHHcC--CEEEEEecCCc---c-h-hhhccccCC------ceEEecCCccCcC
Confidence 3899999632 2689999999999999999 55556554321 1 1 111111233 3333322211100
Q ss_pred ccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccc--hhhhccCceEEEEeeCCcchhhhhhcccccccccCCC
Q 012436 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTY--PLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~--~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~ 191 (464)
.....+......+.....+.+.+++.+||+||.+....... ..++..++|+|++.|....
T Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~------------------ 131 (364)
T 1f0k_A 70 GIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIA------------------ 131 (364)
T ss_dssp CHHHHHTCHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSSC------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCCCC------------------
Confidence 00001111112223445566778888999999876543221 2556789999998883210
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCC----CCCCC
Q 012436 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP----LERST 267 (464)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~----~~~~~ 267 (464)
. ...++..+.+|.+++.++.. + + ++.+++||++.+.+.... ....+
T Consensus 132 ------~--------------~~~~~~~~~~d~v~~~~~~~-------~--~-~~~~i~n~v~~~~~~~~~~~~~~~~~~ 181 (364)
T 1f0k_A 132 ------G--------------LTNKWLAKIATKVMQAFPGA-------F--P-NAEVVGNPVRTDVLALPLPQQRLAGRE 181 (364)
T ss_dssp ------C--------------HHHHHHTTTCSEEEESSTTS-------S--S-SCEECCCCCCHHHHTSCCHHHHHTTCC
T ss_pred ------c--------------HHHHHHHHhCCEEEecChhh-------c--C-CceEeCCccchhhcccchhhhhcccCC
Confidence 0 01244558899999988764 2 2 678999999876543211 01123
Q ss_pred CCc-EEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcE-EEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 268 EYP-AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPR-LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 268 ~~~-~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~-l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
+.+ ++++.|++.+.|+.+.+++|++.+.+ +++ ++++|+++ .+++++.++++++. +|.|.|++
T Consensus 182 ~~~~il~~~g~~~~~k~~~~li~a~~~l~~-------~~~~l~i~G~~~-------~~~l~~~~~~~~~~-~v~~~g~~- 245 (364)
T 1f0k_A 182 GPVRVLVVGGSQGARILNQTMPQVAAKLGD-------SVTIWHQSGKGS-------QQSVEQAYAEAGQP-QHKVTEFI- 245 (364)
T ss_dssp SSEEEEEECTTTCCHHHHHHHHHHHHHHGG-------GEEEEEECCTTC-------HHHHHHHHHHTTCT-TSEEESCC-
T ss_pred CCcEEEEEcCchHhHHHHHHHHHHHHHhcC-------CcEEEEEcCCch-------HHHHHHHHhhcCCC-ceEEecch-
Confidence 334 45566789999999999999998843 466 56788775 16788888888864 79999999
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc-------cceecccCCccceeecC--C--HHHHH
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK-------MDIVLEEDGQQTGFLAQ--N--AEEYA 414 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~-------~~~v~~~~~~~~g~~~~--~--~~~la 414 (464)
+++.++|+.||++|+||. |++++|||++|+|||+++.+|.. .+++.+ +.|++++ | +++++
T Consensus 246 -~~~~~~~~~ad~~v~~sg----~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~----g~g~~~~~~d~~~~~la 316 (364)
T 1f0k_A 246 -DDMAAAYAWADVVVCRSG----ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKA----GAAKIIEQPQLSVDAVA 316 (364)
T ss_dssp -SCHHHHHHHCSEEEECCC----HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHT----TSEEECCGGGCCHHHHH
T ss_pred -hhHHHHHHhCCEEEECCc----hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhC----CcEEEeccccCCHHHHH
Confidence 899999999999999973 89999999999999999988762 145554 5598886 5 89999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhc
Q 012436 415 DAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 415 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
++|.++ |++.++++++++++.+++|+|+.+++++.++|++.-.++
T Consensus 317 ~~i~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 361 (364)
T 1f0k_A 317 NTLAGW---SRETLLTMAERARAASIPDATERVANEVSRVARALEHHH 361 (364)
T ss_dssp HHHHTC---CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTTC----
T ss_pred HHHHhc---CHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHhhc
Confidence 999988 788899999999987788999999999999998765543
No 19
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.97 E-value=8.4e-31 Score=251.99 Aligned_cols=276 Identities=12% Similarity=0.004 Sum_probs=198.5
Q ss_pred hHHHHHHhhhcCCcEEEecccc-cccc--hhhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHH
Q 012436 129 VYLSWEALCKFTPLYYFDTSGY-AFTY--PLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKI 205 (464)
Q Consensus 129 ~~~~~~~l~~~~~Dvv~~~~~~-~~~~--~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (464)
...+.+.+++.+||+||.+... .... ..++..++|++.+.|... . . ..| ..+.. .
T Consensus 84 ~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~-------~-~---~~~--------~~~~~---~ 141 (375)
T 3beo_A 84 LEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLR-------T-W---DKY--------SPYPE---E 141 (375)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCC-------C-S---CTT--------SSTTH---H
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEecccc-------c-c---ccc--------CCChh---H
Confidence 4456677888999999976542 2222 145578999987655210 0 0 000 00000 0
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCC-CCCCCCccCC-C------CCCCCCcEEEEEe
Q 012436 206 VYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPP-CDTSGLQVLP-L------ERSTEYPAIISVA 276 (464)
Q Consensus 206 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~-~d~~~~~~~~-~------~~~~~~~~i~~~G 276 (464)
...+...+.+|.++++|+..++.+.+. +. ++++.+++|| +|...+.... . ...+++++++++|
T Consensus 142 -------~~~~~~~~~~d~ii~~s~~~~~~~~~~-g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~vl~~~g 213 (375)
T 3beo_A 142 -------MNRQLTGVMADLHFSPTAKSATNLQKE-NKDESRIFITGNTAIDALKTTVKETYSHPVLEKLGNNRLVLMTAH 213 (375)
T ss_dssp -------HHHHHHHHHCSEEEESSHHHHHHHHHT-TCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTTTTSEEEEEECC
T ss_pred -------hhhhHHhhhhheeeCCCHHHHHHHHHc-CCCcccEEEECChhHhhhhhhhhhhhhHHHHHhccCCCeEEEEec
Confidence 011223356999999999999999875 54 5689999999 6654332111 0 0023445678899
Q ss_pred ccCCC-CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc
Q 012436 277 QFRPE-KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (464)
Q Consensus 277 ~~~~~-K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ 355 (464)
++.+. ||++.+++|++.+.++. |++++++ |.+++ ..+.+.+++.+ +..++|.|+|+++..++.++|+.
T Consensus 214 r~~~~~K~~~~li~a~~~l~~~~----~~~~~i~-~~g~~---~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ 282 (375)
T 3beo_A 214 RRENLGEPMRNMFRAIKRLVDKH----EDVQVVY-PVHMN---PVVRETANDIL---GDYGRIHLIEPLDVIDFHNVAAR 282 (375)
T ss_dssp CGGGTTHHHHHHHHHHHHHHHHC----TTEEEEE-ECCSC---HHHHHHHHHHH---TTCTTEEEECCCCHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHHhhC----CCeEEEE-eCCCC---HHHHHHHHHHh---hccCCEEEeCCCCHHHHHHHHHh
Confidence 98775 99999999999998765 5888654 65543 12233444332 22368999999999999999999
Q ss_pred CcEEEEcCCCCCCChHHHHHHHhCCcEEEeCC-CCCccceecccCCccceeecC-CHHHHHHHHHHHHcCCHHHHHHHHH
Q 012436 356 AVVGIHSMIDEHFGISVVEYMAAGAIPIAHNS-AGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIISMPETERLEMAA 433 (464)
Q Consensus 356 ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~-~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~~~~~~~~~~~~ 433 (464)
||++++|| |.+++|||++|+|||+++. ++. .+++.+ + +|++++ |+++++++|.++++ |++.++++++
T Consensus 283 ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~-~e~v~~---g-~g~~v~~d~~~la~~i~~ll~-~~~~~~~~~~ 351 (375)
T 3beo_A 283 SYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTER-PEGIEA---G-TLKLAGTDEETIFSLADELLS-DKEAHDKMSK 351 (375)
T ss_dssp CSEEEECC-----HHHHHHHHHHTCCEEECSSCCSC-HHHHHT---T-SEEECCSCHHHHHHHHHHHHH-CHHHHHHHCC
T ss_pred CcEEEECC-----CChHHHHHhcCCCEEEecCCCCC-ceeecC---C-ceEEcCCCHHHHHHHHHHHHh-ChHhHhhhhh
Confidence 99999998 6679999999999999964 776 788877 5 999985 99999999999999 9999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHH
Q 012436 434 AARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 434 ~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
+++++.+.|+|+.+++.+.+.++
T Consensus 352 ~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 352 ASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp CCCTTCCSCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCcHHHHHHHHHHHHhh
Confidence 88776678999999999887653
No 20
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.97 E-value=1.2e-30 Score=251.62 Aligned_cols=355 Identities=12% Similarity=0.028 Sum_probs=232.3
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCC-CCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESP-DLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
|||+++....+ + ...+..++++|.+.|+ ++++++. +.. ..........+++... +.+....
T Consensus 1 mkIl~v~~~~~---~-~~~~~~l~~~L~~~g~~~~~v~~~-~~~----~~~~~~~~~~~~~~~~-----~~~~~~~---- 62 (384)
T 1vgv_A 1 MKVLTVFGTRP---E-AIKMAPLVHALAKDPFFEAKVCVT-AQH----REMLDQVLKLFSIVPD-----YDLNIMQ---- 62 (384)
T ss_dssp CEEEEEECSHH---H-HHHHHHHHHHHHHSTTCEEEEEEC-CSS----GGGGHHHHHHHTCCCS-----EECCCCS----
T ss_pred CeEEEEecccH---H-HHHHHHHHHHHHhCCCCceEEEEc-CCC----HHHHHHHHHHcCCCCC-----cceecCC----
Confidence 78999865431 2 2335688999999984 6665543 322 1111122222333110 1111110
Q ss_pred ccCcceehhhhchhhhHHHHHHhhhcCCcEEEeccc-ccccc-h-hhhccCceEEEEeeCCcchhhhhhcccccccccCC
Q 012436 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSG-YAFTY-P-LARIFGCRVICYTHYPTISLDMISRVREGSSMYNN 190 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~-~~~~~-~-~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~ 190 (464)
... ............+.+.+++.+||+||.+.. ..... . .++..++|++.+.|.... . ..+
T Consensus 63 ~~~---~~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~--------~---~~~-- 126 (384)
T 1vgv_A 63 PGQ---GLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRT--------G---DLY-- 126 (384)
T ss_dssp TTS---CHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCC--------S---CTT--
T ss_pred CCc---cHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccc--------c---ccc--
Confidence 000 000001223456667788999999997654 22221 1 456789999887773110 0 000
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCC-CCCCCccC-------
Q 012436 191 NASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPC-DTSGLQVL------- 261 (464)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~-d~~~~~~~------- 261 (464)
..+... . ....+.+.+|.++++|+..++.+.+. +. ++++.+++||+ |...+...
T Consensus 127 ------~~~~~~---~-------~~~~~~~~~d~ii~~s~~~~~~l~~~-g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~ 189 (384)
T 1vgv_A 127 ------SPWPEE---A-------NRTLTGHLAMYHFSPTETSRQNLLRE-NVADSRIFITGNTVIDALLWVRDQVMSSDK 189 (384)
T ss_dssp ------SSTTHH---H-------HHHHHHTTCSEEEESSHHHHHHHHHT-TCCGGGEEECCCHHHHHHHHHHHHTTTCHH
T ss_pred ------CCCchH---h-------hHHHHHhhccEEEcCcHHHHHHHHHc-CCChhhEEEeCChHHHHHHhhhhccccchh
Confidence 001000 0 01122467999999999999999775 54 56799999984 32111100
Q ss_pred -------CCC-C-CCCCcEEEEEeccCCC-CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHh
Q 012436 262 -------PLE-R-STEYPAIISVAQFRPE-KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIE 331 (464)
Q Consensus 262 -------~~~-~-~~~~~~i~~~G~~~~~-K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~ 331 (464)
... . .+++.+++++|++.+. ||++.+++|+..+.++. |++++++.++. . ....+.+++.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~----~~~~l~i~~g~-~---~~~~~~l~~~~~~ 261 (384)
T 1vgv_A 190 LRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTH----QDIQIVYPVHL-N---PNVREPVNRILGH 261 (384)
T ss_dssp HHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHC----TTEEEEEECCB-C---HHHHHHHHHHHTT
T ss_pred hhHHHHHhccccCCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhC----CCeEEEEEcCC-C---HHHHHHHHHHhhc
Confidence 000 1 1233578899999876 99999999999998776 58888886332 1 1234555555432
Q ss_pred cCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCC-CCCccceecccCCccceeecC-C
Q 012436 332 LKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNS-AGPKMDIVLEEDGQQTGFLAQ-N 409 (464)
Q Consensus 332 ~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~-~~~~~~~v~~~~~~~~g~~~~-~ 409 (464)
.++|.|+|+++.+++.++|+.||++|+|| |.+++|||++|+|||+++. ++. .+++.+ + +|++++ |
T Consensus 262 ---~~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~-~e~v~~---g-~g~lv~~d 328 (384)
T 1vgv_A 262 ---VKNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPSLGKPVLVMRDTTER-PEAVTA---G-TVRLVGTD 328 (384)
T ss_dssp ---CTTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGGGTCCEEEESSCCSC-HHHHHH---T-SEEEECSS
T ss_pred ---CCCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHHcCCCEEEccCCCCc-chhhhC---C-ceEEeCCC
Confidence 36899999998899999999999999998 4458999999999999986 666 788877 5 999986 9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhc
Q 012436 410 AEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 410 ~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
+++++++|.++++ |++.+++|+++++++.+.++|+.+++.+.++++++.+.+
T Consensus 329 ~~~la~~i~~ll~-d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 380 (384)
T 1vgv_A 329 KQRIVEEVTRLLK-DENEYQAMSRAHNPYGDGQACSRILEALKNNRISLGSHH 380 (384)
T ss_dssp HHHHHHHHHHHHH-CHHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCCCC----
T ss_pred HHHHHHHHHHHHh-ChHHHhhhhhccCCCcCCCHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999 999999999988876688999999999999888776544
No 21
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.96 E-value=3.1e-28 Score=238.30 Aligned_cols=284 Identities=14% Similarity=0.166 Sum_probs=202.6
Q ss_pred CCcEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHH
Q 012436 140 TPLYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYG 216 (464)
Q Consensus 140 ~~Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
++|+||.|..+...++ +.+ ..++|+++++|.|....+....+. + ... + .
T Consensus 123 ~~DiV~vHdyhl~~l~~~lr~~~~~~~i~~~~H~pfp~~~~~~~lp----------------~-------~~~----i-l 174 (482)
T 1uqt_A 123 DDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALP----------------T-------YDT----L-L 174 (482)
T ss_dssp TTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCCCHHHHTTST----------------T-------HHH----H-H
T ss_pred CCCEEEEECchHHHHHHHHHHhCCCCcEEEEEcCCCCCHHHHhhCc----------------c-------HHH----H-H
Confidence 5699998876655555 333 348999999997643222111100 0 000 0 1
Q ss_pred HHhhcCCEEEEcCHHHHHHHHH-----------------HhCCCCCeEEecCCCCCCCCccCCCC-----------CCCC
Q 012436 217 LVGSCADLAMVNSSWTQSHIEK-----------------LWGIPDRIKRVYPPCDTSGLQVLPLE-----------RSTE 268 (464)
Q Consensus 217 ~~~~~ad~vi~~S~~~~~~~~~-----------------~~~~~~~i~~i~~~~d~~~~~~~~~~-----------~~~~ 268 (464)
..+..+|.+...+....+.+.. .++...++.++|||+|.+.|.+.... .-.+
T Consensus 175 ~~ll~~d~i~f~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~g~~~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~~~ 254 (482)
T 1uqt_A 175 EQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKN 254 (482)
T ss_dssp HHHTTSSEEEESSHHHHHHHHHHHHHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHTTT
T ss_pred HhhhccCeEEEECHHHHHHHHHHHHHHhCCccccCCeEEECCeEEEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHhCC
Confidence 1124567777766655544432 12223578899999998766531100 0125
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCc---cHHHHHHHHHHHHhcC----CC--CcEE
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKS---DEERLQSLKDKSIELK----VD--GNVE 339 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~---~~~~~~~l~~~~~~~~----l~--~~v~ 339 (464)
+++|+++||+.+.||++.+++|++.+.++.++...+++|+++|.+...+ ..++.+++++++.+++ .. ..|+
T Consensus 255 ~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~ 334 (482)
T 1uqt_A 255 VQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLY 334 (482)
T ss_dssp CEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEE
T ss_pred CEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEE
Confidence 6899999999999999999999999988763211257899999743221 2234556666665532 11 1355
Q ss_pred -EccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCC-----cEEEeCCCCCccceecccCCccceeecC--CHH
Q 012436 340 -FYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA-----IPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAE 411 (464)
Q Consensus 340 -~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~-----PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~ 411 (464)
+.|.++.+++..+|+.||++++||..||||++++||||||+ |+|+|+.+|..+++ . +|++++ |++
T Consensus 335 ~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l--~-----~g~lv~p~d~~ 407 (482)
T 1uqt_A 335 YLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL--T-----SALIVNPYDRD 407 (482)
T ss_dssp EECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTC--T-----TSEEECTTCHH
T ss_pred EeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHh--C-----CeEEECCCCHH
Confidence 57999999999999999999999999999999999999997 89999988774443 2 577775 999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 012436 412 EYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 412 ~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 458 (464)
+++++|.+++++++++++++++++++.+++|||+.+++++++.|+++
T Consensus 408 ~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 408 EVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 99999999998567788999999999997799999999999999876
No 22
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.96 E-value=2.7e-28 Score=239.12 Aligned_cols=317 Identities=13% Similarity=0.074 Sum_probs=210.3
Q ss_pred cCCcEEEecccccccch-hhh--ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHH
Q 012436 139 FTPLYYFDTSGYAFTYP-LAR--IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMY 215 (464)
Q Consensus 139 ~~~Dvv~~~~~~~~~~~-~~~--~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.+|||+|++.......+ +.+ ..++|.|+|+|...+...+.. ....+.|++ ................-...++
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lag--qg~~~~y~~---L~~~~~d~ea~~~~i~~~~~~E 254 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCA--SGSFDFYNC---LESVDVDHEAGRFGIYHRYCIE 254 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTS--SSCSCHHHH---GGGCCHHHHHHHTTCHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhh--cCCCchhhh---hhhcCCChhhhhhchhHHHHHH
Confidence 56999998888777655 333 568999999996432111100 000000000 0000000000000001123467
Q ss_pred HHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCC------------------------CCCC-CCCc
Q 012436 216 GLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP------------------------LERS-TEYP 270 (464)
Q Consensus 216 ~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~------------------------~~~~-~~~~ 270 (464)
+..+..||.|+++|+..+++++..++.+.+.. ||||+|.+.+.+.. ...+ ++.+
T Consensus 255 Kaga~~AD~ITTVS~~yA~Ei~~Ll~r~~d~i-IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~l 333 (725)
T 3nb0_A 255 RAAAHSADVFTTVSQITAFEAEHLLKRKPDGI-LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTL 333 (725)
T ss_dssp HHHHHHSSEEEESSHHHHHHHHHHTSSCCSEE-CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEE
T ss_pred HHHHHhCCEEEECCHHHHHHHHHHhcCCCCEE-EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCCcee
Confidence 88889999999999999999999877655544 99999999886420 0111 2335
Q ss_pred EEEEEeccC-CCCChHHHHHHHHHHHHHhc---CCCCCcEEEEEcCCCCCccH---------------------------
Q 012436 271 AIISVAQFR-PEKAHPLQLEAFSVALRKLD---ADLPRPRLQFVGSCRNKSDE--------------------------- 319 (464)
Q Consensus 271 ~i~~~G~~~-~~K~~~~ll~a~~~l~~~~~---~~~p~~~l~i~G~~~~~~~~--------------------------- 319 (464)
.++.+||+. ..||++.+++|+.++....+ .+.+-+.|+++..+......
T Consensus 334 iifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 413 (725)
T 3nb0_A 334 YFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRI 413 (725)
T ss_dssp EEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhHHH
Confidence 566689998 78999999999999875521 11124677777765322100
Q ss_pred --------------------------------------------------------HHHHHHHHHHHhcCCCCc------
Q 012436 320 --------------------------------------------------------ERLQSLKDKSIELKVDGN------ 337 (464)
Q Consensus 320 --------------------------------------------------------~~~~~l~~~~~~~~l~~~------ 337 (464)
...+.+.+.++++++.++
T Consensus 414 ~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drVK 493 (725)
T 3nb0_A 414 FDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVK 493 (725)
T ss_dssp HHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSEE
T ss_pred HHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCCcee
Confidence 001223334455666555
Q ss_pred EEEc-cCCChh------HHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCC----ccceee
Q 012436 338 VEFY-KNLLYR------DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDG----QQTGFL 406 (464)
Q Consensus 338 v~~~-g~~~~~------~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~----~~~g~~ 406 (464)
|.|+ ++++.. ++.++|+.||++|+||.+|+||++++||||||+|||+|+.+|. .+.+.+-.+ +.+|++
T Consensus 494 VIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~-~d~V~dg~~~~~~~~tG~l 572 (725)
T 3nb0_A 494 MIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGF-GSYMEDLIETNQAKDYGIY 572 (725)
T ss_dssp EEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHH-HHHHHTTSCHHHHHHTTEE
T ss_pred EEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCCh-hhhhhccccccCCCCceEE
Confidence 4555 666665 5899999999999999999999999999999999999999998 577665110 147876
Q ss_pred cC-----CHHHHHHHH----HHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhc
Q 012436 407 AQ-----NAEEYADAI----VKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILCHA 462 (464)
Q Consensus 407 ~~-----~~~~la~~i----~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 462 (464)
+. ++++++++| ..+++.++..+.++++++++.+++|+|+.+++++.++|++++...
T Consensus 573 V~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~aL~~~ 637 (725)
T 3nb0_A 573 IVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLALRRG 637 (725)
T ss_dssp EECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 62 555555444 444444777888999998877789999999999999999988653
No 23
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.96 E-value=6.6e-28 Score=203.78 Aligned_cols=163 Identities=19% Similarity=0.221 Sum_probs=138.5
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
+++|+|+|++.+.||++.+++|+..+++. |+++|+++|+++.. +.+++.++++++ ++.+ |+++.++
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-----~~~~l~i~G~g~~~------~~~~~~~~~~~~--~v~~-g~~~~~~ 67 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYK-----QDIVLLLKGKGPDE------KKIKLLAQKLGV--KAEF-GFVNSNE 67 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTG-----GGEEEEEECCSTTH------HHHHHHHHHHTC--EEEC-CCCCHHH
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccC-----CCeEEEEEeCCccH------HHHHHHHHHcCC--eEEE-eecCHHH
Confidence 47899999999999999999999998533 58999999998653 778888888886 8999 9999999
Q ss_pred HHHHHhcCcEEEEcCCCCCCChHHHHHHHhCC-cEEEe-CCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHH
Q 012436 349 LVKLLGGAVVGIHSMIDEHFGISVVEYMAAGA-IPIAH-NSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPET 426 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~-PvI~~-~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~ 426 (464)
+.++|+.||++++||..|++|++++|||++|+ |||++ +.++. .+++.+ +.+.+...|+++++++|.++++ |++
T Consensus 68 ~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~-~~~~~~---~~~~~~~~~~~~l~~~i~~l~~-~~~ 142 (166)
T 3qhp_A 68 LLEILKTCTLYVHAANVESEAIACLEAISVGIVPVIANSPLSAT-RQFALD---ERSLFEPNNAKDLSAKIDWWLE-NKL 142 (166)
T ss_dssp HHHHHTTCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGG-GGGCSS---GGGEECTTCHHHHHHHHHHHHH-CHH
T ss_pred HHHHHHhCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCch-hhhccC---CceEEcCCCHHHHHHHHHHHHh-CHH
Confidence 99999999999999999999999999999998 99995 45665 788877 5553434499999999999999 999
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHH
Q 012436 427 ERLEMAAAARRRAARFSEQRFYED 450 (464)
Q Consensus 427 ~~~~~~~~~~~~~~~~s~~~~~~~ 450 (464)
.++++++++++.+++|+|+.++++
T Consensus 143 ~~~~~~~~~~~~~~~~s~~~~~~~ 166 (166)
T 3qhp_A 143 ERERMQNEYAKSALNYTLENSVIQ 166 (166)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHCChhhhhcC
Confidence 999999999998899999998764
No 24
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.95 E-value=2.9e-26 Score=221.39 Aligned_cols=286 Identities=13% Similarity=0.031 Sum_probs=211.6
Q ss_pred CCcEEEecccccccch--hhh-ccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHH
Q 012436 140 TPLYYFDTSGYAFTYP--LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYG 216 (464)
Q Consensus 140 ~~Dvv~~~~~~~~~~~--~~~-~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
.-|+|..|..+...+| +.+ ..+.++.+++|-|....++.+.+. ...+. ---
T Consensus 149 ~~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPfPs~e~f~~Lp----------------------~~~r~----ell 202 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILP----------------------KEIRT----GIL 202 (496)
T ss_dssp SSCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCCCCHHHHTTSC----------------------HHHHH----HHH
T ss_pred CCCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCCCCHHHHhhCc----------------------HhHHH----HHH
Confidence 4578877777777666 333 568899999997765444432221 00000 112
Q ss_pred HHhhcCCEEEEcCHHHHHHHHH----Hh-CC--------------CCCeEEecCCCCCCCCccCCCCC-C------CCCc
Q 012436 217 LVGSCADLAMVNSSWTQSHIEK----LW-GI--------------PDRIKRVYPPCDTSGLQVLPLER-S------TEYP 270 (464)
Q Consensus 217 ~~~~~ad~vi~~S~~~~~~~~~----~~-~~--------------~~~i~~i~~~~d~~~~~~~~~~~-~------~~~~ 270 (464)
..+-.+|.|.+.+....+.+.+ .. +. ..++.++|+|+|.+.|.+..... . .+++
T Consensus 203 ~gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~~~~ 282 (496)
T 3t5t_A 203 HGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWADGHR 282 (496)
T ss_dssp HHHTTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHTTSE
T ss_pred HHHHhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhCCce
Confidence 3347899999999988777644 22 21 13677899999998887443210 0 3568
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC---ccHHHHHHHHHHHHhcC----CCCcEEEccC
Q 012436 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK---SDEERLQSLKDKSIELK----VDGNVEFYKN 343 (464)
Q Consensus 271 ~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~---~~~~~~~~l~~~~~~~~----l~~~v~~~g~ 343 (464)
+|+++||+++.||++.+++|+ ++.++.++.. ++.|+++|..... +..++.+++++++.+.+ .. .|.|+|.
T Consensus 283 lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~-~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~-~V~f~g~ 359 (496)
T 3t5t_A 283 LVVHSGRTDPIKNAERAVRAF-VLAARGGGLE-KTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD-TVRIDND 359 (496)
T ss_dssp EEEEEEESSGGGCHHHHHHHH-HHHHHTSSCT-TEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT-SEEEEEC
T ss_pred EEEEcccCccccCHHHHHHHH-HHHHhCcccc-eEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc-CEEEeCC
Confidence 999999999999999999999 8888774222 4668888753321 22344556666665543 22 6999999
Q ss_pred CChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhC---CcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHH
Q 012436 344 LLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAG---AIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIV 418 (464)
Q Consensus 344 ~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G---~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~ 418 (464)
++.+++..+|+.||++++||..||||++++|||||| .|+|+|..+|..+++ +.+|++++ |+++++++|.
T Consensus 360 v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l------~~~allVnP~D~~~lA~AI~ 433 (496)
T 3t5t_A 360 NDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVL------GEYCRSVNPFDLVEQAEAIS 433 (496)
T ss_dssp CCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHH------GGGSEEECTTBHHHHHHHHH
T ss_pred CCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHh------CCCEEEECCCCHHHHHHHHH
Confidence 999999999999999999999999999999999996 899999988884443 24688886 9999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 012436 419 KIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 419 ~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
++++|++++++++.++.++.+.+++....++.+++.+...-.
T Consensus 434 ~aL~m~~~er~~r~~~~~~~V~~~d~~~W~~~fl~~L~~~~~ 475 (496)
T 3t5t_A 434 AALAAGPRQRAEAAARRRDAARPWTLEAWVQAQLDGLAADHA 475 (496)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhccc
Confidence 999977788999999999999999999999999998876643
No 25
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.95 E-value=1.8e-26 Score=220.64 Aligned_cols=204 Identities=13% Similarity=0.079 Sum_probs=158.2
Q ss_pred HHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCC-CCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHH
Q 012436 215 YGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSV 293 (464)
Q Consensus 215 ~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~-d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~ 293 (464)
.+.+++.+|.++++|+..++.+.+. |.+ ++.+++|+. +.... + ...-+.+++++.|+ ..||.+.+++|++.
T Consensus 147 ~~~~~~~~d~ii~~S~~~~~~l~~~-g~~-ki~vi~n~~f~~~~~---~-~~~l~~~vi~~~~~--~~k~~~~ll~A~~~ 218 (374)
T 2xci_A 147 EKILSKKFDLIIMRTQEDVEKFKTF-GAK-RVFSCGNLKFICQKG---K-GIKLKGEFIVAGSI--HTGEVEIILKAFKE 218 (374)
T ss_dssp HHHHHTTCSEEEESCHHHHHHHHTT-TCC-SEEECCCGGGCCCCC---S-CCCCSSCEEEEEEE--CGGGHHHHHHHHHH
T ss_pred HHHHHHhCCEEEECCHHHHHHHHHc-CCC-eEEEcCCCccCCCcC---h-hhhhcCCEEEEEeC--CCchHHHHHHHHHH
Confidence 3566789999999999999999876 556 899999873 22111 1 11112256666664 46899999999999
Q ss_pred HHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC--------CcEEEccCCChhHHHHHHhcCcEEEEcCC-
Q 012436 294 ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD--------GNVEFYKNLLYRDLVKLLGGAVVGIHSMI- 364 (464)
Q Consensus 294 l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~--------~~v~~~g~~~~~~~~~~l~~ad~~v~ps~- 364 (464)
+.++. |+++|+|+|+++++ .++++++++++|+. ++|.+.|.. +|+..+|+.||++++||.
T Consensus 219 l~~~~----p~~~lvivG~g~~~-----~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~--~dl~~~y~~aDv~vl~ss~ 287 (374)
T 2xci_A 219 IKKTY----SSLKLILVPRHIEN-----AKIFEKKARDFGFKTSFFENLEGDVILVDRF--GILKELYPVGKIAIVGGTF 287 (374)
T ss_dssp HHTTC----TTCEEEEEESSGGG-----HHHHHHHHHHTTCCEEETTCCCSSEEECCSS--SCHHHHGGGEEEEEECSSS
T ss_pred HHhhC----CCcEEEEECCCHHH-----HHHHHHHHHHCCCceEEecCCCCcEEEECCH--HHHHHHHHhCCEEEECCcc
Confidence 98765 68999999988643 24788888888876 468888877 899999999999888765
Q ss_pred CCCCChHHHHHHHhCCcEEEe-CCCCCccceecccCCc-cceee--cCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-
Q 012436 365 DEHFGISVVEYMAAGAIPIAH-NSAGPKMDIVLEEDGQ-QTGFL--AQNAEEYADAIVKIISMPETERLEMAAAARRRA- 439 (464)
Q Consensus 365 ~e~~~~~~~Ea~a~G~PvI~~-~~~~~~~~~v~~~~~~-~~g~~--~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~- 439 (464)
.|++|.+++||||||+|||++ +.++. .+++.+ . .+|++ ++|+++++++|.++++ | +.+++|++++++.+
T Consensus 288 ~e~gg~~~lEAmA~G~PVI~~~~~~~~-~e~~~~---~~~~G~l~~~~d~~~La~ai~~ll~-d-~~r~~mg~~ar~~~~ 361 (374)
T 2xci_A 288 VNIGGHNLLEPTCWGIPVIYGPYTHKV-NDLKEF---LEKEGAGFEVKNETELVTKLTELLS-V-KKEIKVEEKSREIKG 361 (374)
T ss_dssp SSSCCCCCHHHHTTTCCEEECSCCTTS-HHHHHH---HHHTTCEEECCSHHHHHHHHHHHHH-S-CCCCCHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHhCCCEEECCCccCh-HHHHHH---HHHCCCEEEeCCHHHHHHHHHHHHh-H-HHHHHHHHHHHHHHH
Confidence 467899999999999999986 56666 676643 2 34544 4599999999999999 9 99999999999988
Q ss_pred HccC
Q 012436 440 ARFS 443 (464)
Q Consensus 440 ~~~s 443 (464)
++++
T Consensus 362 ~~~g 365 (374)
T 2xci_A 362 CYLE 365 (374)
T ss_dssp HHHH
T ss_pred hccc
Confidence 4443
No 26
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.95 E-value=2e-26 Score=200.95 Aligned_cols=179 Identities=24% Similarity=0.291 Sum_probs=152.5
Q ss_pred ecCCCCCCCCc--cCCC-----C-------CCCCCcEEEEEeccC-CCCChHHHHHHHHHHH--HHhcCCCCCcEEEEEc
Q 012436 249 VYPPCDTSGLQ--VLPL-----E-------RSTEYPAIISVAQFR-PEKAHPLQLEAFSVAL--RKLDADLPRPRLQFVG 311 (464)
Q Consensus 249 i~~~~d~~~~~--~~~~-----~-------~~~~~~~i~~~G~~~-~~K~~~~ll~a~~~l~--~~~~~~~p~~~l~i~G 311 (464)
||||+|.+.|. +... . ..++.++++|+|++. +.||++.+++++..+. ++. |+++|+++|
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~----~~~~l~i~G 77 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEF----QEMRFIIIG 77 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHHHHHHTTCCSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGG----GGEEEEEEC
T ss_pred CCCccChhhccccccccchhhHHHHHHHHcCCCCCCEEEEeeccccccCCHHHHHHHHHHHHhhccC----CCeEEEEEC
Confidence 69999999887 4331 0 012456999999999 9999999999999996 555 589999999
Q ss_pred CCCCCccHHHHHHHHHHHHhcCCCCcEEE-ccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC
Q 012436 312 SCRNKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP 390 (464)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~ 390 (464)
.++. ++.+++++.+++++ +|++ +|+++++++.++|+.||++++||..|++|++++|||++|+|||+++.++.
T Consensus 78 ~~~~----~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~ 150 (200)
T 2bfw_A 78 KGDP----ELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGL 150 (200)
T ss_dssp CBCH----HHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHH
T ss_pred CCCh----HHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCCh
Confidence 8751 24578888888876 8999 99999999999999999999999999999999999999999999999887
Q ss_pred ccceecccCCccceeecC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccC
Q 012436 391 KMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIISMPETERLEMAAAARRRAARFS 443 (464)
Q Consensus 391 ~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s 443 (464)
.+++ + +.+|++++ |+++++++|.+++++|++.++++++++++.+++||
T Consensus 151 -~e~~-~---~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~fs 200 (200)
T 2bfw_A 151 -RDII-T---NETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFS 200 (200)
T ss_dssp -HHHC-C---TTTCEEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTC
T ss_pred -HHHc-C---CCceEEecCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 6777 7 78999886 99999999999998899999999999999983375
No 27
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.94 E-value=3.3e-26 Score=219.94 Aligned_cols=275 Identities=13% Similarity=0.020 Sum_probs=190.1
Q ss_pred hHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHHH
Q 012436 129 VYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKI 205 (464)
Q Consensus 129 ~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (464)
...+.+.+++.+||+||.+......++ .++..++|++. .|..... +. .| ..+.. .
T Consensus 80 ~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~-~~~~~~~-------~~---~~--------~~~~~---~ 137 (376)
T 1v4v_A 80 LPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGH-VEAGLRS-------GN---LK--------EPFPE---E 137 (376)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEE-ETCCCCC-------SC---TT--------SSTTH---H
T ss_pred HHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEEE-EeCCCcc-------cc---cc--------CCCch---H
Confidence 345667788899999997654322222 45678999864 4422110 00 00 00000 0
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCC-CCCCCc----cCCCCCCCCCcEEEEEeccC
Q 012436 206 VYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPC-DTSGLQ----VLPLERSTEYPAIISVAQFR 279 (464)
Q Consensus 206 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~-d~~~~~----~~~~~~~~~~~~i~~~G~~~ 279 (464)
...+.+.+.+|.++++|+..++.+.+. |. ++++.+++|+. |...+. .......+++++++++||+.
T Consensus 138 -------~~~~~~~~~~~~~~~~s~~~~~~l~~~-g~~~~ki~vi~n~~~d~~~~~~~~~~~~~~~~~~~~vl~~~gr~~ 209 (376)
T 1v4v_A 138 -------ANRRLTDVLTDLDFAPTPLAKANLLKE-GKREEGILVTGQTGVDAVLLAAKLGRLPEGLPEGPYVTVTMHRRE 209 (376)
T ss_dssp -------HHHHHHHHHCSEEEESSHHHHHHHHTT-TCCGGGEEECCCHHHHHHHHHHHHCCCCTTCCSSCEEEECCCCGG
T ss_pred -------HHHHHHHHHhceeeCCCHHHHHHHHHc-CCCcceEEEECCchHHHHhhhhhhhHHHHhcCCCCEEEEEeCccc
Confidence 112333467999999999999999875 54 56788999874 321110 00011123445677899988
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcEEEEE-cCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcE
Q 012436 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFV-GSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVV 358 (464)
Q Consensus 280 ~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~-G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~ 358 (464)
..||++.+++|++.+.++. |++++++. |.++ ...+.+++.++. .++|.|.|+++..++.++|+.||+
T Consensus 210 ~~k~~~~ll~a~~~l~~~~----~~~~lv~~~g~~~-----~~~~~l~~~~~~---~~~v~~~g~~g~~~~~~~~~~ad~ 277 (376)
T 1v4v_A 210 NWPLLSDLAQALKRVAEAF----PHLTFVYPVHLNP-----VVREAVFPVLKG---VRNFVLLDPLEYGSMAALMRASLL 277 (376)
T ss_dssp GGGGHHHHHHHHHHHHHHC----TTSEEEEECCSCH-----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHTEEE
T ss_pred chHHHHHHHHHHHHHHhhC----CCeEEEEECCCCH-----HHHHHHHHHhcc---CCCEEEECCCCHHHHHHHHHhCcE
Confidence 8889999999999997765 58888886 6442 233556655432 358999999988899999999999
Q ss_pred EEEcCCCCCCChHHHHHHHhCCcEEEeC-CCCCccceecccCCccceeecC-CHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012436 359 GIHSMIDEHFGISVVEYMAAGAIPIAHN-SAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIISMPETERLEMAAAAR 436 (464)
Q Consensus 359 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~-~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~ 436 (464)
+|.|| + |+ ++|||++|+|||+++ .++. .+++.. ++|++++ |+++++++|.++++ |++.+++|++++
T Consensus 278 ~v~~S--~--g~-~lEA~a~G~PvI~~~~~~~~-~~~~~~----g~g~lv~~d~~~la~~i~~ll~-d~~~~~~~~~~~- 345 (376)
T 1v4v_A 278 LVTDS--G--GL-QEEGAALGVPVVVLRNVTER-PEGLKA----GILKLAGTDPEGVYRVVKGLLE-NPEELSRMRKAK- 345 (376)
T ss_dssp EEESC--H--HH-HHHHHHTTCCEEECSSSCSC-HHHHHH----TSEEECCSCHHHHHHHHHHHHT-CHHHHHHHHHSC-
T ss_pred EEECC--c--CH-HHHHHHcCCCEEeccCCCcc-hhhhcC----CceEECCCCHHHHHHHHHHHHh-ChHhhhhhcccC-
Confidence 99998 2 33 789999999999984 5666 676654 5899884 99999999999999 999998888633
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHh
Q 012436 437 RRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 437 ~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
+.|++...++++.+.+.+++.
T Consensus 346 ---~~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 346 ---NPYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp ---CSSCCSCHHHHHHHHHHHHTT
T ss_pred ---CCCCCChHHHHHHHHHHHHhc
Confidence 456666677777777777654
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.93 E-value=2e-25 Score=190.46 Aligned_cols=151 Identities=26% Similarity=0.318 Sum_probs=132.3
Q ss_pred CCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHH--hcCCCCcEEEccC
Q 012436 266 STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI--ELKVDGNVEFYKN 343 (464)
Q Consensus 266 ~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~--~~~l~~~v~~~g~ 343 (464)
+.++++|+|+|++.+.||++.++++++.+ |+++|+++|.++.. +++++.++ ++++.++|.+.|+
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l--------~~~~l~i~G~~~~~------~~l~~~~~~~~~~l~~~v~~~g~ 85 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKL--------QDEKLYIVGWFSKG------DHAERYARKIMKIAPDNVKFLGS 85 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHC--------TTSCEEEEBCCCTT------STHHHHHHHHHHHSCTTEEEEES
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhC--------CCcEEEEEecCccH------HHHHHHHHhhhcccCCcEEEeCC
Confidence 35668899999999999999999999987 48999999998764 46777777 7788889999999
Q ss_pred CChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeec-CCHHHHHHHHHHHHc
Q 012436 344 LLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLA-QNAEEYADAIVKIIS 422 (464)
Q Consensus 344 ~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~-~~~~~la~~i~~l~~ 422 (464)
++++++.++|+.||++++||..|++|++++|||++|+|||+++.++. .+++.+ +.+|+++ +|+++++++|.++++
T Consensus 86 ~~~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~-~e~i~~---~~~g~~~~~d~~~l~~~i~~l~~ 161 (177)
T 2f9f_A 86 VSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGF-KETVIN---EKTGYLVNADVNEIIDAMKKVSK 161 (177)
T ss_dssp CCHHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHH-HHHCCB---TTTEEEECSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCH-HHHhcC---CCccEEeCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999887 788888 7899876 599999999999999
Q ss_pred CCHHH-HHHHHHHH
Q 012436 423 MPETE-RLEMAAAA 435 (464)
Q Consensus 423 ~~~~~-~~~~~~~~ 435 (464)
|++. ++++++++
T Consensus 162 -~~~~~~~~~~~~a 174 (177)
T 2f9f_A 162 -NPDKFKKDCFRRA 174 (177)
T ss_dssp -CTTTTHHHHHHHH
T ss_pred -CHHHHHHHHHHHH
Confidence 8875 34443333
No 29
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.91 E-value=1.9e-22 Score=188.25 Aligned_cols=196 Identities=13% Similarity=0.037 Sum_probs=150.5
Q ss_pred HHHHHhhcCCEEEEcCHHHHHHHHHHhCCC-CCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHH
Q 012436 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGIP-DRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFS 292 (464)
Q Consensus 214 ~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~-~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~ 292 (464)
.|+.+++.||.|+++|+.+++.+.+. |.+ .++.++++. |... ..+.....+++.++|+|++.....++.
T Consensus 126 ~E~~~y~~aD~Ii~~S~~~~~~l~~~-G~~~~ki~~~~~~-~~~~--~~~~~~~~~~~~i~yaG~l~k~~~L~~------ 195 (339)
T 3rhz_A 126 RTIAYYNKADVVVAPSQKMIDKLRDF-GMNVSKTVVQGMW-DHPT--QAPMFPAGLKREIHFPGNPERFSFVKE------ 195 (339)
T ss_dssp HHHHHHTTCSEEEESCHHHHHHHHHT-TCCCSEEEECCSC-CCCC--CCCCCCCEEEEEEEECSCTTTCGGGGG------
T ss_pred HHHHHHHHCCEEEECCHHHHHHHHHc-CCCcCceeecCCC-CccC--cccccccCCCcEEEEeCCcchhhHHHh------
Confidence 57888999999999999999999886 543 566444332 2211 111122234578999999985332221
Q ss_pred HHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCC-------
Q 012436 293 VALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMID------- 365 (464)
Q Consensus 293 ~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~------- 365 (464)
+ . |+++|+++|+|++. .++ ||+|+|++|.+|+.++++++|+.++....
T Consensus 196 -l---~----~~~~f~ivG~G~~~----------------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~ 250 (339)
T 3rhz_A 196 -W---K----YDIPLKVYTWQNVE----------------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQS 250 (339)
T ss_dssp -C---C----CSSCEEEEESCCCC----------------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHT
T ss_pred -C---C----CCCeEEEEeCCccc----------------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHH
Confidence 1 1 58999999999752 134 99999999999999999999988775211
Q ss_pred CCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHH
Q 012436 366 EHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQ 445 (464)
Q Consensus 366 e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 445 (464)
...|.+++||||+|+|||+++.++. .+++.+ +++|+.+++.++++++|..+ +++++++|++++++.+++++++
T Consensus 251 ~~~P~Kl~eymA~G~PVI~~~~~~~-~~~v~~---~~~G~~~~~~~e~~~~i~~l---~~~~~~~m~~na~~~a~~~~~~ 323 (339)
T 3rhz_A 251 LYCSYKLGSFLAAGIPVIVQEGIAN-QELIEN---NGLGWIVKDVEEAIMKVKNV---NEDEYIELVKNVRSFNPILRKG 323 (339)
T ss_dssp TCCCHHHHHHHHHTCCEEEETTCTT-THHHHH---HTCEEEESSHHHHHHHHHHC---CHHHHHHHHHHHHHHTHHHHTT
T ss_pred hcChHHHHHHHHcCCCEEEccChhH-HHHHHh---CCeEEEeCCHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhhcc
Confidence 2568999999999999999998887 789998 89999999999999999875 6678999999999887777777
Q ss_pred HHHHHH
Q 012436 446 RFYEDF 451 (464)
Q Consensus 446 ~~~~~~ 451 (464)
.+.++.
T Consensus 324 ~f~k~~ 329 (339)
T 3rhz_A 324 FFTRRL 329 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776553
No 30
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.90 E-value=6.7e-22 Score=192.29 Aligned_cols=355 Identities=12% Similarity=0.010 Sum_probs=214.5
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRR 108 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (464)
.++.++|||+++... ++|....+..++++|.++| ++|.++++.. ..+ .....|+ +++.++..
T Consensus 15 ~~~~~~MrIl~~~~~---~~Gh~~~~~~la~~L~~~G--heV~v~~~~~------~~~-~~~~~g~------~~~~~~~~ 76 (412)
T 3otg_A 15 HIEGRHMRVLFASLG---THGHTYPLLPLATAARAAG--HEVTFATGEG------FAG-TLRKLGF------EPVATGMP 76 (412)
T ss_dssp ---CCSCEEEEECCS---SHHHHGGGHHHHHHHHHTT--CEEEEEECGG------GHH-HHHHTTC------EEEECCCC
T ss_pred CcccceeEEEEEcCC---CcccHHHHHHHHHHHHHCC--CEEEEEccHH------HHH-HHHhcCC------ceeecCcc
Confidence 455678999998743 3577888889999999999 5666666431 111 1112233 33333210
Q ss_pred ---cc-------ccccc------Ccceehhhhchh------hhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEE
Q 012436 109 ---KW-------IEEST------YPRFTMIGQSFG------SVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVIC 166 (464)
Q Consensus 109 ---~~-------~~~~~------~~~~~~~~~~~~------~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~ 166 (464)
.+ ..... ..........+. ....+.+.+++.+||+|+.+........+++..++|+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~ 156 (412)
T 3otg_A 77 VFDGFLAALRIRFDTDSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTIC 156 (412)
T ss_dssp HHHHHHHHHHHHHSCSCCTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEE
T ss_pred cccchhhhhhhhhcccCCccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEE
Confidence 00 00000 000000111111 125566778889999998664333222366789999999
Q ss_pred EeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHH--------hhcCCEEEEcCHHHHHHHHH
Q 012436 167 YTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLV--------GSCADLAMVNSSWTQSHIEK 238 (464)
Q Consensus 167 ~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ad~vi~~S~~~~~~~~~ 238 (464)
+.|.+... ............+ +..+.. ...+|.+++.++...+...+
T Consensus 157 ~~~~~~~~----------------------~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 211 (412)
T 3otg_A 157 HGVGRDTP----------------------DDLTRSIEEEVRG---LAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEF 211 (412)
T ss_dssp ECCSCCCC----------------------SHHHHHHHHHHHH---HHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHH
T ss_pred ecccccCc----------------------hhhhHHHHHHHHH---HHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcc
Confidence 88843210 0011111111111 111211 24678899999887776655
Q ss_pred HhCCCCCeEEecCCCCCC-CCccC-CCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCC-
Q 012436 239 LWGIPDRIKRVYPPCDTS-GLQVL-PLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN- 315 (464)
Q Consensus 239 ~~~~~~~i~~i~~~~d~~-~~~~~-~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~- 315 (464)
.... ....+.+.+.+.. ..... .....+++.++++.|+.. .++.+.+.++++.+.+. +.++++++++..
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~------~~~~~~~~g~~~~ 283 (412)
T 3otg_A 212 RARP-RRHELRPVPFAEQGDLPAWLSSRDTARPLVYLTLGTSS-GGTVEVLRAAIDGLAGL------DADVLVASGPSLD 283 (412)
T ss_dssp HTCT-TEEECCCCCCCCCCCCCGGGGGSCTTSCEEEEECTTTT-CSCHHHHHHHHHHHHTS------SSEEEEECCSSCC
T ss_pred cCCC-CcceeeccCCCCCCCCCCccccccCCCCEEEEEcCCCC-cCcHHHHHHHHHHHHcC------CCEEEEEECCCCC
Confidence 4322 1111122222211 11111 011234446778888875 67777777777776543 667777766543
Q ss_pred CccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC---cc
Q 012436 316 KSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP---KM 392 (464)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~---~~ 392 (464)
. +.++ +++++|.+.|++ ++.++|+.||++|.++ .+.+++|||++|+|+|+.+.++. ..
T Consensus 284 ~------~~l~------~~~~~v~~~~~~---~~~~~l~~ad~~v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~ 344 (412)
T 3otg_A 284 V------SGLG------EVPANVRLESWV---PQAALLPHVDLVVHHG----GSGTTLGALGAGVPQLSFPWAGDSFANA 344 (412)
T ss_dssp C------TTCC------CCCTTEEEESCC---CHHHHGGGCSEEEESC----CHHHHHHHHHHTCCEEECCCSTTHHHHH
T ss_pred h------hhhc------cCCCcEEEeCCC---CHHHHHhcCcEEEECC----chHHHHHHHHhCCCEEecCCchhHHHHH
Confidence 2 1222 236799999999 4889999999999764 24789999999999999876542 13
Q ss_pred ceecccCCccceeecC----CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012436 393 DIVLEEDGQQTGFLAQ----NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRP 457 (464)
Q Consensus 393 ~~v~~~~~~~~g~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 457 (464)
+.+.+ .++|++++ |+++++++|.++++ |++.++++++.+++..+.++++.+++.+.+++.+
T Consensus 345 ~~v~~---~g~g~~~~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 345 QAVAQ---AGAGDHLLPDNISPDSVSGAAKRLLA-EESYRAGARAVAAEIAAMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHH---HTSEEECCGGGCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC-
T ss_pred HHHHH---cCCEEecCcccCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 45555 67888775 89999999999999 9999999999999888889999999999888754
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.90 E-value=8.7e-22 Score=187.49 Aligned_cols=340 Identities=12% Similarity=0.081 Sum_probs=203.6
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
.||++.... .||.-.-+..++++|.++| ++|..++... ..........++ ++..++...+....
T Consensus 3 ~~i~i~~GG---TgGHi~palala~~L~~~g--~~V~~vg~~~-----g~e~~~v~~~g~------~~~~i~~~~~~~~~ 66 (365)
T 3s2u_A 3 GNVLIMAGG---TGGHVFPALACAREFQARG--YAVHWLGTPR-----GIENDLVPKAGL------PLHLIQVSGLRGKG 66 (365)
T ss_dssp CEEEEECCS---SHHHHHHHHHHHHHHHHTT--CEEEEEECSS-----STHHHHTGGGTC------CEEECC--------
T ss_pred CcEEEEcCC---CHHHHHHHHHHHHHHHhCC--CEEEEEECCc-----hHhhchhhhcCC------cEEEEECCCcCCCC
Confidence 578775321 1355555788999999999 5555555432 111122222233 23333322221111
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCc
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~ 192 (464)
.+..+...+..+...+.+.+++++.+||+|+.+.++..... .++..++|++++-.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n~~-------------------- 126 (365)
T 3s2u_A 67 LKSLVKAPLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNAV-------------------- 126 (365)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEECSSS--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEecchh--------------------
Confidence 22223333444566677888899999999998777654422 56689999987322110
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCC--CCCCCCc
Q 012436 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL--ERSTEYP 270 (464)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~--~~~~~~~ 270 (464)
... ..+...+.++.+.+..+.. +....++.++.+++..+.+..... ...++++
T Consensus 127 -------~G~-----------~nr~l~~~a~~v~~~~~~~-------~~~~~k~~~~g~pvr~~~~~~~~~~~~~~~~~~ 181 (365)
T 3s2u_A 127 -------AGT-----------ANRSLAPIARRVCEAFPDT-------FPASDKRLTTGNPVRGELFLDAHARAPLTGRRV 181 (365)
T ss_dssp -------CCH-----------HHHHHGGGCSEEEESSTTS-------SCC---CEECCCCCCGGGCCCTTSSCCCTTSCC
T ss_pred -------hhh-----------HHHhhccccceeeeccccc-------ccCcCcEEEECCCCchhhccchhhhcccCCCCc
Confidence 000 1234457889988766532 233567778888887655442221 1223344
Q ss_pred E-EEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHH
Q 012436 271 A-IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (464)
Q Consensus 271 ~-i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~ 349 (464)
. +++.|+....+..+.+.+++..+.... ++.+++.++..+ .+.+.+..++.+ .++.+.+++ +++
T Consensus 182 ~ilv~gGs~g~~~~~~~~~~al~~l~~~~-----~~~vi~~~G~~~------~~~~~~~~~~~~--~~~~v~~f~--~dm 246 (365)
T 3s2u_A 182 NLLVLGGSLGAEPLNKLLPEALAQVPLEI-----RPAIRHQAGRQH------AEITAERYRTVA--VEADVAPFI--SDM 246 (365)
T ss_dssp EEEECCTTTTCSHHHHHHHHHHHTSCTTT-----CCEEEEECCTTT------HHHHHHHHHHTT--CCCEEESCC--SCH
T ss_pred EEEEECCcCCccccchhhHHHHHhccccc-----ceEEEEecCccc------cccccceecccc--cccccccch--hhh
Confidence 4 455566677777777788887765442 455554433221 245555555554 468889999 899
Q ss_pred HHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCcc-------ceecccCCccceeecC----CHHHHHHHHH
Q 012436 350 VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKM-------DIVLEEDGQQTGFLAQ----NAEEYADAIV 418 (464)
Q Consensus 350 ~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~-------~~v~~~~~~~~g~~~~----~~~~la~~i~ 418 (464)
.++|+.||++|.-+ .+.++.|++++|+|+|..+.+.... +.+.+ .+.|++++ ++++++++|.
T Consensus 247 ~~~l~~aDlvI~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~---~G~a~~l~~~~~~~~~L~~~i~ 319 (365)
T 3s2u_A 247 AAAYAWADLVICRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVR---SGAGRLLPQKSTGAAELAAQLS 319 (365)
T ss_dssp HHHHHHCSEEEECC----CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHT---TTSEEECCTTTCCHHHHHHHHH
T ss_pred hhhhccceEEEecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHH---CCCEEEeecCCCCHHHHHHHHH
Confidence 99999999999643 3688999999999999877553211 12333 46676664 6899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 012436 419 KIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 419 ~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 458 (464)
++++ |++.+++|++++++.......+.+++.++++.+.+
T Consensus 320 ~ll~-d~~~~~~m~~~a~~~~~~~aa~~ia~~i~~larG~ 358 (365)
T 3s2u_A 320 EVLM-HPETLRSMADQARSLAKPEATRTVVDACLEVARGL 358 (365)
T ss_dssp HHHH-CTHHHHHHHHHHHHTCCTTHHHHHHHHHHHHC---
T ss_pred HHHC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccc
Confidence 9999 99999999999988765566666776666665543
No 32
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.88 E-value=1e-21 Score=189.14 Aligned_cols=356 Identities=13% Similarity=0.045 Sum_probs=212.5
Q ss_pred cccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEE-EcccCCCCchhHHHHHHhhcCcccCCCceeeeeecc
Q 012436 30 RRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIV-YTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRR 108 (464)
Q Consensus 30 ~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (464)
+.+++|||+++...-+ +.-. +..++++|.+.+.++++.+ .|+... +..+...+.+++... +.+...
T Consensus 23 ~~m~~~kI~~v~Gtr~---~~~~-~a~li~~l~~~~~~~~~~~~~tG~h~----~m~~~~~~~~~i~~~-----~~l~v~ 89 (403)
T 3ot5_A 23 NAMAKIKVMSIFGTRP---EAIK-MAPLVLALEKEPETFESTVVITAQHR----EMLDQVLEIFDIKPD-----IDLDIM 89 (403)
T ss_dssp ---CCEEEEEEECSHH---HHHH-HHHHHHHHHTCTTTEEEEEEECC---------CHHHHHHTTCCCS-----EECCCC
T ss_pred hccccceEEEEEecCh---hHHH-HHHHHHHHHhCCCCCcEEEEEecCcH----HHHHHHHHhcCCCCC-----cccccC
Confidence 3345689999876543 2333 3578899988631366554 444321 122222344555211 111110
Q ss_pred cccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhcccccc
Q 012436 109 KWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGS 185 (464)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~ 185 (464)
. .. ..........+..+.+.+++.+||+|+.+......++ .++..++|++ +.+.+..+.+.
T Consensus 90 ~----~~---~~~~~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~-h~~aglrs~~~-------- 153 (403)
T 3ot5_A 90 K----KG---QTLAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLG-HVEAGLRTWNK-------- 153 (403)
T ss_dssp C-----C---CCHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEE-EESCCCCCSCT--------
T ss_pred C----CC---CCHHHHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEE-EEECCcccccc--------
Confidence 0 00 0111112344566777889999999997655333332 5568899975 33322110000
Q ss_pred cccCCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCC-CCCCCccCCC-
Q 012436 186 SMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVLPL- 263 (464)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~-d~~~~~~~~~- 263 (464)
| ..+.. ... ...+.+.+|.+++.|+..++.+.+.+-.++++.++.|+. |...+.....
T Consensus 154 --~--------~~~p~---~~~-------r~~~~~~a~~~~~~se~~~~~l~~~Gi~~~~i~vvGn~~~D~~~~~~~~~~ 213 (403)
T 3ot5_A 154 --Y--------SPFPE---EMN-------RQLTGVMADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDY 213 (403)
T ss_dssp --T--------SSTTH---HHH-------HHHHHHHCSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHSCTTC
T ss_pred --c--------cCCcH---HHH-------HHHHHHhcCEEECCCHHHHHHHHHcCCCcccEEEeCCchHHHHHhhhhhhc
Confidence 0 00000 011 122336689999999999999988743367899998853 3211110000
Q ss_pred C------CCCCCcEEEEEeccCC-CCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCC
Q 012436 264 E------RSTEYPAIISVAQFRP-EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDG 336 (464)
Q Consensus 264 ~------~~~~~~~i~~~G~~~~-~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~ 336 (464)
. ..+++..+++.||... .|+++.+++|+..+.++. |++++++.+... ....+.+++. ++..+
T Consensus 214 ~~~~~~~l~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~----~~~~~v~~~~~~----~~~~~~l~~~---~~~~~ 282 (403)
T 3ot5_A 214 HHPILENLGDNRLILMTAHRRENLGEPMQGMFEAVREIVESR----EDTELVYPMHLN----PAVREKAMAI---LGGHE 282 (403)
T ss_dssp CCHHHHSCTTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHC----TTEEEEEECCSC----HHHHHHHHHH---HTTCT
T ss_pred chHHHHhccCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhC----CCceEEEecCCC----HHHHHHHHHH---hCCCC
Confidence 0 0223344555665433 367899999999998776 688888874321 1222333332 33346
Q ss_pred cEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe-CCCCCccceecccCCccceeecC-CHHHHH
Q 012436 337 NVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH-NSAGPKMDIVLEEDGQQTGFLAQ-NAEEYA 414 (464)
Q Consensus 337 ~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~-~~~~~~~~~v~~~~~~~~g~~~~-~~~~la 414 (464)
+|.+.|++++.++..+|+.||+++.+| |...+||+++|+|+|++ +.++. .+.+.. ++|++++ |+++++
T Consensus 283 ~v~l~~~l~~~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~-~e~v~~----g~~~lv~~d~~~l~ 352 (403)
T 3ot5_A 283 RIHLIEPLDAIDFHNFLRKSYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTER-PEGIEA----GTLKLIGTNKENLI 352 (403)
T ss_dssp TEEEECCCCHHHHHHHHHHEEEEEECC-----HHHHHHGGGTTCCEEECCSSCSC-HHHHHH----TSEEECCSCHHHHH
T ss_pred CEEEeCCCCHHHHHHHHHhcCEEEECC-----ccHHHHHHHhCCCEEEecCCCcc-hhheeC----CcEEEcCCCHHHHH
Confidence 899999999899999999999999886 33348999999999999 55554 677655 5888887 999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 012436 415 DAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 415 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
+++.++++ |++.+++|++++.. |.....++++.+.+.+.+.
T Consensus 353 ~ai~~ll~-~~~~~~~m~~~~~~----~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 353 KEALDLLD-NKESHDKMAQAANP----YGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp HHHHHHHH-CHHHHHHHHHSCCT----TCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CHHHHHHHHhhcCc----ccCCcHHHHHHHHHHHHhC
Confidence 99999999 99999888765443 4444445555555555443
No 33
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.88 E-value=1.1e-21 Score=188.79 Aligned_cols=345 Identities=13% Similarity=0.091 Sum_probs=212.1
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceE-EEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCI-VYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWI 111 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (464)
++|||+++...-+ |.- -+..++++|.+.. ++++. +.|+.. .+..+...+.+++... +.+....
T Consensus 24 ~m~ki~~v~Gtr~---~~~-~~a~li~~l~~~~-~~~~~~~~tG~h----~~~~~~~~~~~~i~~~-----~~l~~~~-- 87 (396)
T 3dzc_A 24 AMKKVLIVFGTRP---EAI-KMAPLVQQLCQDN-RFVAKVCVTGQH----REMLDQVLELFSITPD-----FDLNIME-- 87 (396)
T ss_dssp CCEEEEEEECSHH---HHH-HHHHHHHHHHHCT-TEEEEEEECCSS----SHHHHHHHHHTTCCCS-----EECCCCC--
T ss_pred CCCeEEEEEeccH---hHH-HHHHHHHHHHhCC-CCcEEEEEeccc----HHHHHHHHHhcCCCCc-----eeeecCC--
Confidence 3589999876553 233 3357888998862 36664 444432 1233333345555211 1111100
Q ss_pred ccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch---hhhccCceEEEEeeCCcchhhhhhccccccccc
Q 012436 112 EESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMY 188 (464)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~ 188 (464)
............+..+.+.+++.+||+|+.+......++ .++..++|++. .+.+..+.+. |
T Consensus 88 -----~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h-~~ag~rs~~~----------~ 151 (396)
T 3dzc_A 88 -----PGQTLNGVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGH-VEAGLRTGNI----------Y 151 (396)
T ss_dssp -----TTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEE-ETCCCCCSCT----------T
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEE-EECCcccccc----------c
Confidence 000111122344566777789999999997665444333 55688999754 3322210000 0
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-CCCeEEecCCC-CCCCCccC-----
Q 012436 189 NNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPC-DTSGLQVL----- 261 (464)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~-~~~i~~i~~~~-d~~~~~~~----- 261 (464)
..+... .. ...+.+.+|.++++|+..++.+.+. |. ++++.+++|++ |...+...
T Consensus 152 --------~~~~~~---~~-------r~~~~~~a~~~~~~se~~~~~l~~~-G~~~~ki~vvGn~~~d~~~~~~~~~~~~ 212 (396)
T 3dzc_A 152 --------SPWPEE---GN-------RKLTAALTQYHFAPTDTSRANLLQE-NYNAENIFVTGNTVIDALLAVREKIHTD 212 (396)
T ss_dssp --------SSTTHH---HH-------HHHHHHTCSEEEESSHHHHHHHHHT-TCCGGGEEECCCHHHHHHHHHHHHHHHC
T ss_pred --------cCCcHH---HH-------HHHHHHhcCEEECCCHHHHHHHHHc-CCCcCcEEEECCcHHHHHHHhhhhcccc
Confidence 001010 00 1122478899999999999999886 54 57899998864 32111100
Q ss_pred ---------CCC-CCCCCcEE-EEEeccC-CCCChHHHHHHHHHHHHHhcCCCCCcEEEEE-cCCCCCccHHHHHHHHHH
Q 012436 262 ---------PLE-RSTEYPAI-ISVAQFR-PEKAHPLQLEAFSVALRKLDADLPRPRLQFV-GSCRNKSDEERLQSLKDK 328 (464)
Q Consensus 262 ---------~~~-~~~~~~~i-~~~G~~~-~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~-G~~~~~~~~~~~~~l~~~ 328 (464)
... .++++.++ ++.+|.. ..|+++.+++|++.+.++. |++++++. |.++ ...+.+++.
T Consensus 213 ~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~----~~~~~v~~~g~~~-----~~~~~l~~~ 283 (396)
T 3dzc_A 213 MDLQATLESQFPMLDASKKLILVTGHRRESFGGGFERICQALITTAEQH----PECQILYPVHLNP-----NVREPVNKL 283 (396)
T ss_dssp HHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHC----TTEEEEEECCBCH-----HHHHHHHHH
T ss_pred hhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhC----CCceEEEEeCCCh-----HHHHHHHHH
Confidence 011 11223444 4454543 3478999999999998775 58888886 4331 223444443
Q ss_pred HHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe-CCCCCccceecccCCccceeec
Q 012436 329 SIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH-NSAGPKMDIVLEEDGQQTGFLA 407 (464)
Q Consensus 329 ~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~-~~~~~~~~~v~~~~~~~~g~~~ 407 (464)
++..++|.+.+++++.++..+|+.||++|.+| | |+ .+||+++|+|+|++ +.++. .+.+.. | .++++
T Consensus 284 ---~~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---G-g~-~~EA~a~G~PvV~~~~~~~~-~e~v~~---G-~~~lv 350 (396)
T 3dzc_A 284 ---LKGVSNIVLIEPQQYLPFVYLMDRAHIILTDS---G-GI-QEEAPSLGKPVLVMRETTER-PEAVAA---G-TVKLV 350 (396)
T ss_dssp ---TTTCTTEEEECCCCHHHHHHHHHHCSEEEESC---S-GG-GTTGGGGTCCEEECCSSCSC-HHHHHH---T-SEEEC
T ss_pred ---HcCCCCEEEeCCCCHHHHHHHHHhcCEEEECC---c-cH-HHHHHHcCCCEEEccCCCcc-hHHHHc---C-ceEEc
Confidence 23356899999999889999999999999997 3 33 38999999999999 55655 677766 4 66777
Q ss_pred C-CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012436 408 Q-NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAI 455 (464)
Q Consensus 408 ~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 455 (464)
+ |++++++++.++++ |++.+++|++++. .|.....++++.+.+
T Consensus 351 ~~d~~~l~~ai~~ll~-d~~~~~~m~~~~~----~~~~~~aa~ri~~~l 394 (396)
T 3dzc_A 351 GTNQQQICDALSLLLT-DPQAYQAMSQAHN----PYGDGKACQRIADIL 394 (396)
T ss_dssp TTCHHHHHHHHHHHHH-CHHHHHHHHTSCC----TTCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CHHHHHHHhhccC----CCcCChHHHHHHHHH
Confidence 6 89999999999999 9999988887654 344444555555544
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.84 E-value=1.3e-19 Score=177.02 Aligned_cols=367 Identities=11% Similarity=-0.008 Sum_probs=202.0
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccc--cc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRK--WI 111 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 111 (464)
+|||+++.. .++|....+..++++|.++| ++|+++++.. ..+.. ...|+ +++.++... ..
T Consensus 7 m~kIl~~~~---~~~Gh~~p~~~la~~L~~~G--~~V~~~~~~~------~~~~~-~~~g~------~~~~~~~~~~~~~ 68 (430)
T 2iyf_A 7 PAHIAMFSI---AAHGHVNPSLEVIRELVARG--HRVTYAIPPV------FADKV-AATGP------RPVLYHSTLPGPD 68 (430)
T ss_dssp -CEEEEECC---SCHHHHGGGHHHHHHHHHTT--CEEEEEECGG------GHHHH-HTTSC------EEEECCCCSCCTT
T ss_pred cceEEEEeC---CCCccccchHHHHHHHHHCC--CeEEEEeCHH------HHHHH-HhCCC------EEEEcCCcCcccc
Confidence 479999742 23577888899999999999 5666666542 11111 11232 333332210 00
Q ss_pred cc-c--cCcceehh---hh-chhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEeeCCcchhhhhhccccc
Q 012436 112 EE-S--TYPRFTMI---GQ-SFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREG 184 (464)
Q Consensus 112 ~~-~--~~~~~~~~---~~-~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~~~~~~ 184 (464)
.. . .......+ .. .......+.+.+++.+||+||..........+++..++|++.+.+.+...........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~-- 146 (430)
T 2iyf_A 69 ADPEAWGSTLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVA-- 146 (430)
T ss_dssp SCGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTH--
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccc--
Confidence 00 0 00000000 00 1122344556678889999986443222223677889999988764321000000000
Q ss_pred ccccCCCcccccchhhhHHHHHHHHHHHHHHHH---------HhhcCCEEEEcCHHHHHHHHHHhCCCCC-eEEecCCCC
Q 012436 185 SSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGL---------VGSCADLAMVNSSWTQSHIEKLWGIPDR-IKRVYPPCD 254 (464)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ad~vi~~S~~~~~~~~~~~~~~~~-i~~i~~~~d 254 (464)
............... +...+..+.+. ....+|.+++.+....+.....+ +.+ +..+.++++
T Consensus 147 ------~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~v~~vG~~~~ 217 (430)
T 2iyf_A 147 ------EPMWREPRQTERGRA-YYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRV--DEDVYTFVGACQG 217 (430)
T ss_dssp ------HHHHHHHHHSHHHHH-HHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGGS--CTTTEEECCCCC-
T ss_pred ------cchhhhhccchHHHH-HHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCcccC--CCccEEEeCCcCC
Confidence 000000000000000 01111111111 22257888888876544332222 345 766766554
Q ss_pred CCC-CccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEE-EEEcCCCCCccHHHHHHHHHHHHhc
Q 012436 255 TSG-LQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRL-QFVGSCRNKSDEERLQSLKDKSIEL 332 (464)
Q Consensus 255 ~~~-~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l-~i~G~~~~~~~~~~~~~l~~~~~~~ 332 (464)
... .........++..+++++|++. .++.+.+.++++.+... |++++ +++|.++.. +.++
T Consensus 218 ~~~~~~~~~~~~~~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~-----~~~~~~~~~G~~~~~------~~l~------ 279 (430)
T 2iyf_A 218 DRAEEGGWQRPAGAEKVVLVSLGSAF-TKQPAFYRECVRAFGNL-----PGWHLVLQIGRKVTP------AELG------ 279 (430)
T ss_dssp ----CCCCCCCTTCSEEEEEECTTTC-C-CHHHHHHHHHHHTTC-----TTEEEEEECC---CG------GGGC------
T ss_pred CCCCCCCCccccCCCCeEEEEcCCCC-CCcHHHHHHHHHHHhcC-----CCeEEEEEeCCCCCh------HHhc------
Confidence 221 0011111223446788899987 55555544444444321 36777 567876532 1221
Q ss_pred CCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC---ccceecccCCccceeecC-
Q 012436 333 KVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP---KMDIVLEEDGQQTGFLAQ- 408 (464)
Q Consensus 333 ~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~---~~~~v~~~~~~~~g~~~~- 408 (464)
.++++|.+.|++++. ++|+.||++|..+ ...+++|||++|+|+|+++..+. ..+.+.+ .+.|+.++
T Consensus 280 ~~~~~v~~~~~~~~~---~~l~~ad~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~---~g~g~~~~~ 349 (430)
T 2iyf_A 280 ELPDNVEVHDWVPQL---AILRQADLFVTHA----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQG---LGVARKLAT 349 (430)
T ss_dssp SCCTTEEEESSCCHH---HHHTTCSEEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHH---TTSEEECCC
T ss_pred cCCCCeEEEecCCHH---HHhhccCEEEECC----CccHHHHHHHhCCCEEECCCccchHHHHHHHHH---cCCEEEcCC
Confidence 235789999999654 7899999998763 23789999999999999987542 0233445 57788775
Q ss_pred ---CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 012436 409 ---NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPI 458 (464)
Q Consensus 409 ---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 458 (464)
++++++++|.++++ |++.++++++.+++..+.++++.+++.+.+++++.
T Consensus 350 ~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 401 (430)
T 2iyf_A 350 EEATADLLRETALALVD-DPEVARRLRRIQAEMAQEGGTRRAADLIEAELPAR 401 (430)
T ss_dssp C-CCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSCC-
T ss_pred CCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcc
Confidence 88999999999999 99999999998888777788998888887776543
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.83 E-value=3.2e-20 Score=179.50 Aligned_cols=348 Identities=10% Similarity=-0.029 Sum_probs=181.1
Q ss_pred ccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeee
Q 012436 27 HNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLY 106 (464)
Q Consensus 27 ~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (464)
...+++.+|||+|+... ++|....+..++++|.++|| +|.++++.. ..+.. ...|. .+..+.
T Consensus 8 ~~~~~~~~MrIl~~~~~---~~gh~~~~~~La~~L~~~Gh--eV~v~~~~~------~~~~~-~~~G~------~~~~~~ 69 (398)
T 4fzr_A 8 SGVPRGSHMRILVIAGC---SEGFVMPLVPLSWALRAAGH--EVLVAASEN------MGPTV-TGAGL------PFAPTC 69 (398)
T ss_dssp -------CCEEEEECCS---SHHHHGGGHHHHHHHHHTTC--EEEEEEEGG------GHHHH-HHTTC------CEEEEE
T ss_pred CCCCCCCceEEEEEcCC---CcchHHHHHHHHHHHHHCCC--EEEEEcCHH------HHHHH-HhCCC------eeEecC
Confidence 34456677999998754 34777778899999999995 555555421 11111 11233 233332
Q ss_pred cccc----cc----ccc--Cc-----ceehhhhc-----hhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEE
Q 012436 107 RRKW----IE----EST--YP-----RFTMIGQS-----FGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVIC 166 (464)
Q Consensus 107 ~~~~----~~----~~~--~~-----~~~~~~~~-----~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~ 166 (464)
.... .. ... ++ ........ ......+.+.+++.+||+||..........+++..++|++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~ 149 (398)
T 4fzr_A 70 PSLDMPEVLSWDREGNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIE 149 (398)
T ss_dssp SSCCHHHHHSBCTTSCBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEE
T ss_pred CccchHhhhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEE
Confidence 1000 00 000 00 00000000 11223456667888999998543222222266689999999
Q ss_pred EeeCCcchhhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHh---hcCCEEEEcCHHHHHHHHHHhCCC
Q 012436 167 YTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVG---SCADLAMVNSSWTQSHIEKLWGIP 243 (464)
Q Consensus 167 ~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ad~vi~~S~~~~~~~~~~~~~~ 243 (464)
+.|.+.... .+.......... ...+..+ ...+..+..++...+...... .
T Consensus 150 ~~~~~~~~~----------------------~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 202 (398)
T 4fzr_A 150 QSIRLASPE----------------------LIKSAGVGELAP---ELAELGLTDFPDPLLSIDVCPPSMEAQPKPG--T 202 (398)
T ss_dssp ECCSSCCCH----------------------HHHHHHHHHTHH---HHHTTTCSSCCCCSEEEECSCGGGC----CC--C
T ss_pred eccCCCCch----------------------hhhHHHHHHHHH---HHHHcCCCCCCCCCeEEEeCChhhCCCCCCC--C
Confidence 888543110 000111111111 1111111 122455555443332221111 1
Q ss_pred CCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCC----------ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCC
Q 012436 244 DRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEK----------AHPLQLEAFSVALRKLDADLPRPRLQFVGSC 313 (464)
Q Consensus 244 ~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K----------~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~ 313 (464)
..+..++................+++.+++++|++...| .++.+++++..+ ++++++++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~---------~~~~v~~~~~ 273 (398)
T 4fzr_A 203 TKMRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL---------GFEVVVAVSD 273 (398)
T ss_dssp EECCCCCCCCSSCCCCHHHHSCCSSCEEECC----------------CCSHHHHHHHGGGG---------TCEEEECCCC
T ss_pred CCeeeeCCCCCCCCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC---------CCEEEEEeCC
Confidence 111122211011111100001124456778889986544 455555555443 6888888876
Q ss_pred CCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCC----C
Q 012436 314 RNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSA----G 389 (464)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~ 389 (464)
... +.++ +++++|.+.|++| +.++++.||++|.. +.+.+++|||++|+|+|+.... +
T Consensus 274 ~~~------~~l~------~~~~~v~~~~~~~---~~~ll~~ad~~v~~----gG~~t~~Ea~~~G~P~v~~p~~~~q~~ 334 (398)
T 4fzr_A 274 KLA------QTLQ------PLPEGVLAAGQFP---LSAIMPACDVVVHH----GGHGTTLTCLSEGVPQVSVPVIAEVWD 334 (398)
T ss_dssp --------------------CCTTEEEESCCC---HHHHGGGCSEEEEC----CCHHHHHHHHHTTCCEEECCCSGGGHH
T ss_pred cch------hhhc------cCCCcEEEeCcCC---HHHHHhhCCEEEec----CCHHHHHHHHHhCCCEEecCCchhHHH
Confidence 532 2333 2367999999984 67789999999954 4467899999999999996554 3
Q ss_pred CccceecccCCccceeecC----CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 012436 390 PKMDIVLEEDGQQTGFLAQ----NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFK 452 (464)
Q Consensus 390 ~~~~~v~~~~~~~~g~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 452 (464)
. .+.+.+ .+.|+.++ ++++++++|.++++ |++.++++++.+++..+..+++.+++.+.
T Consensus 335 ~-a~~~~~---~g~g~~~~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 335 S-ARLLHA---AGAGVEVPWEQAGVESVLAACARIRD-DSSYVGNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp H-HHHHHH---TTSEEECC-------CHHHHHHHHHH-CTHHHHHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred H-HHHHHH---cCCEEecCcccCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 3 234555 67888875 78899999999999 99999999999888878899999887764
No 36
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.79 E-value=1.4e-18 Score=167.61 Aligned_cols=161 Identities=10% Similarity=0.052 Sum_probs=118.1
Q ss_pred CCcEEEEEeccCCCCCh-HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 268 EYPAIISVAQFRPEKAH-PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~-~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
++.++++.|+....|+. ..+++++... .+. |++++++.|++... +.++ +++++|.+.|+++.
T Consensus 218 ~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~----p~~~~v~~~~~~~~------~~l~------~~~~~v~~~~~~~~ 280 (391)
T 3tsa_A 218 ARRVCICMGRMVLNATGPAPLLRAVAAA-TEL----PGVEAVIAVPPEHR------ALLT------DLPDNARIAESVPL 280 (391)
T ss_dssp SEEEEEECCHHHHHHHCSHHHHHHHHHH-HTS----TTEEEEEECCGGGG------GGCT------TCCTTEEECCSCCG
T ss_pred CCEEEEEcCCCCCcccchHHHHHHHHHh-ccC----CCeEEEEEECCcch------hhcc------cCCCCEEEeccCCH
Confidence 44566777887665444 7777777766 544 68999999876421 2221 24679999999976
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCccceeecC------CHHHHHHHH
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQTGFLAQ------NAEEYADAI 417 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~~g~~~~------~~~~la~~i 417 (464)
.+ +++.||++|.. +.+.+++|||++|+|+|+....+.- .+.+.+ .+.|..++ +++++++++
T Consensus 281 ~~---ll~~ad~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~---~g~g~~~~~~~~~~~~~~l~~ai 350 (391)
T 3tsa_A 281 NL---FLRTCELVICA----GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAA---AGAGICLPDEQAQSDHEQFTDSI 350 (391)
T ss_dssp GG---TGGGCSEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHH---TTSEEECCSHHHHTCHHHHHHHH
T ss_pred HH---HHhhCCEEEeC----CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHH---cCCEEecCcccccCCHHHHHHHH
Confidence 54 46999999954 4456899999999999997553221 233445 57787664 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 418 VKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 418 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
.++++ |++.++++++.+++..+..+++.+++.+.+++.
T Consensus 351 ~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 351 ATVLG-DTGFAAAAIKLSDEITAMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHT-CTHHHHHHHHHHHHHHTSCCHHHHHHHHHHC--
T ss_pred HHHHc-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999 999999999888888788899888887776553
No 37
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.78 E-value=2.4e-18 Score=166.30 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=112.8
Q ss_pred CCCcEEEEEeccCCC-CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 267 TEYPAIISVAQFRPE-KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~-K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
+++.+++++|++... ++.+.+.++++.+.+. ++++++++++.+. +.++ +++++|.+.|+++
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~------~~~~v~~~g~~~~------~~l~------~~~~~v~~~~~~~ 292 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGEV------DADFVLALGDLDI------SPLG------TLPRNVRAVGWTP 292 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS------SSEEEEECTTSCC------GGGC------SCCTTEEEESSCC
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHcC------CCEEEEEECCcCh------hhhc------cCCCcEEEEccCC
Confidence 345677888988544 3555555555555432 7889999887543 1221 3467999999984
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe----CCCCCcc--ceecccCCccceeecC----CHHHHHH
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH----NSAGPKM--DIVLEEDGQQTGFLAQ----NAEEYAD 415 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~~--~~v~~~~~~~~g~~~~----~~~~la~ 415 (464)
+.++|+.||++|.. +.+.+++|||++|+|+|+. +..+. . +.+.+ .+.|+.++ +++.++
T Consensus 293 ---~~~ll~~ad~~v~~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~-a~~~~~~~---~g~g~~~~~~~~~~~~l~- 360 (398)
T 3oti_A 293 ---LHTLLRTCTAVVHH----GGGGTVMTAIDAGIPQLLAPDPRDQFQH-TAREAVSR---RGIGLVSTSDKVDADLLR- 360 (398)
T ss_dssp ---HHHHHTTCSEEEEC----CCHHHHHHHHHHTCCEEECCCTTCCSSC-TTHHHHHH---HTSEEECCGGGCCHHHHH-
T ss_pred ---HHHHHhhCCEEEEC----CCHHHHHHHHHhCCCEEEcCCCchhHHH-HHHHHHHH---CCCEEeeCCCCCCHHHHH-
Confidence 55678999999964 4457899999999999995 44455 4 55566 67888775 444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012436 416 AIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAI 455 (464)
Q Consensus 416 ~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 455 (464)
++++ |++.++++++.+++..+..+++.+++.+.+++
T Consensus 361 ---~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 361 ---RLIG-DESLRTAAREVREEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp ---HHHH-CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred ---HHHc-CHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 8888 99999999998888888899999998887664
No 38
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.76 E-value=4.8e-17 Score=157.39 Aligned_cols=366 Identities=12% Similarity=0.020 Sum_probs=195.1
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
+|||+++... +.|.-..+..++++|.++| ++|+++++. ...+.. ...|. .+..+........
T Consensus 4 M~~il~~~~~---~~Ghv~~~~~La~~L~~~G--heV~v~~~~------~~~~~~-~~~G~------~~~~~~~~~~~~~ 65 (402)
T 3ia7_A 4 QRHILFANVQ---GHGHVYPSLGLVSELARRG--HRITYVTTP------LFADEV-KAAGA------EVVLYKSEFDTFH 65 (402)
T ss_dssp CCEEEEECCS---SHHHHHHHHHHHHHHHHTT--CEEEEEECH------HHHHHH-HHTTC------EEEECCCGGGTSS
T ss_pred CCEEEEEeCC---CCcccccHHHHHHHHHhCC--CEEEEEcCH------HHHHHH-HHcCC------EEEeccccccccc
Confidence 3599998653 2477788889999999999 566666642 121222 12233 3333321100000
Q ss_pred c---cC-----cceeh-hh-hchhhhHHHHHHhhhcCCcEEEecccccc-cchhhhccCceEEEEeeCCcchhhhhh--c
Q 012436 114 S---TY-----PRFTM-IG-QSFGSVYLSWEALCKFTPLYYFDTSGYAF-TYPLARIFGCRVICYTHYPTISLDMIS--R 180 (464)
Q Consensus 114 ~---~~-----~~~~~-~~-~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~-~~~~~~~~~~p~v~~~h~p~~~~~~~~--~ 180 (464)
. .. ..+.. .. ........+.+.+++.+||+||..+.... ...+++..++|++.+.|.......... .
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~ 145 (402)
T 3ia7_A 66 VPEVVKQEDAETQLHLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKE 145 (402)
T ss_dssp SSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCcccccccc
Confidence 0 00 00000 00 01112344556678889999986422222 222667899999988763321100000 0
Q ss_pred ccccccccCCCcccccchhhhHHHHHHHHHHHHH-----HHHHhhcC-CEEEEcCHHHHHHHHHHhCCCCCeEEecCCCC
Q 012436 181 VREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWM-----YGLVGSCA-DLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCD 254 (464)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~a-d~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d 254 (464)
.. ..+... ................... ........ |..++..+...+.....+ +.++.++.+.+.
T Consensus 146 ~~---~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~vGp~~~ 216 (402)
T 3ia7_A 146 LW---KSNGQR----HPADVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETF--DERFAFVGPTLT 216 (402)
T ss_dssp HH---HHHTCC----CGGGSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGC--CTTEEECCCCCC
T ss_pred cc---cccccc----ChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccC--CCCeEEeCCCCC
Confidence 00 000000 0000000111111111000 00111222 666666665544433332 445666644432
Q ss_pred CCCC-ccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEE-EcCCCCCccHHHHHHHHHHHHhc
Q 012436 255 TSGL-QVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQF-VGSCRNKSDEERLQSLKDKSIEL 332 (464)
Q Consensus 255 ~~~~-~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i-~G~~~~~~~~~~~~~l~~~~~~~ 332 (464)
.... ........+++.++++.|+....+ .+.+.++++.+. .. ++++++ +|.+... +.++
T Consensus 217 ~~~~~~~~~~~~~~~~~v~v~~G~~~~~~-~~~~~~~~~~~~-~~-----~~~~~~~~g~~~~~------~~~~------ 277 (402)
T 3ia7_A 217 GRDGQPGWQPPRPDAPVLLVSLGNQFNEH-PEFFRACAQAFA-DT-----PWHVVMAIGGFLDP------AVLG------ 277 (402)
T ss_dssp C----CCCCCSSTTCCEEEEECCSCSSCC-HHHHHHHHHHHT-TS-----SCEEEEECCTTSCG------GGGC------
T ss_pred CcccCCCCcccCCCCCEEEEECCCCCcch-HHHHHHHHHHHh-cC-----CcEEEEEeCCcCCh------hhhC------
Confidence 2111 110111234456778888876554 223333333332 21 466666 4544321 1221
Q ss_pred CCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCC-C----CCccceecccCCccceeec
Q 012436 333 KVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNS-A----GPKMDIVLEEDGQQTGFLA 407 (464)
Q Consensus 333 ~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~-~----~~~~~~v~~~~~~~~g~~~ 407 (464)
.++++|.+.|++++. ++|+.||++|..+ ...+++||+++|+|+|+... . +. .+.+.+ .+.|..+
T Consensus 278 ~~~~~v~~~~~~~~~---~ll~~ad~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~~q~~~-a~~~~~---~g~g~~~ 346 (402)
T 3ia7_A 278 PLPPNVEAHQWIPFH---SVLAHARACLTHG----TTGAVLEAFAAGVPLVLVPHFATEAAPS-AERVIE---LGLGSVL 346 (402)
T ss_dssp SCCTTEEEESCCCHH---HHHTTEEEEEECC----CHHHHHHHHHTTCCEEECGGGCGGGHHH-HHHHHH---TTSEEEC
T ss_pred CCCCcEEEecCCCHH---HHHhhCCEEEECC----CHHHHHHHHHhCCCEEEeCCCcccHHHH-HHHHHH---cCCEEEc
Confidence 136799999999654 8999999999763 23688999999999997654 3 22 234455 5778776
Q ss_pred C----CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012436 408 Q----NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRP 457 (464)
Q Consensus 408 ~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 457 (464)
+ +++++++++.++++ |++.++++++.+++..+..+++..++.+.+++.+
T Consensus 347 ~~~~~~~~~l~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 347 RPDQLEPASIREAVERLAA-DSAVRERVRRMQRDILSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp CGGGCSHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Confidence 4 89999999999999 9999999988888777778888888888877754
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.74 E-value=1.3e-16 Score=154.95 Aligned_cols=366 Identities=11% Similarity=-0.024 Sum_probs=195.0
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKW 110 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (464)
..++|||+++... +.|.-.-+..++++|.++| ++|.++++.. ..+... ..|. .+..+.....
T Consensus 17 ~~~m~rIl~~~~~---~~GHv~p~l~La~~L~~~G--h~V~v~~~~~------~~~~~~-~~G~------~~~~~~~~~~ 78 (415)
T 3rsc_A 17 GRHMAHLLIVNVA---SHGLILPTLTVVTELVRRG--HRVSYVTAGG------FAEPVR-AAGA------TVVPYQSEII 78 (415)
T ss_dssp --CCCEEEEECCS---CHHHHGGGHHHHHHHHHTT--CEEEEEECGG------GHHHHH-HTTC------EEEECCCSTT
T ss_pred cccCCEEEEEeCC---CccccccHHHHHHHHHHCC--CEEEEEeCHH------HHHHHH-hcCC------EEEecccccc
Confidence 4467899998653 3578888889999999999 5666666421 111111 1232 3333221100
Q ss_pred --------cccccCccee--hhhhchhhhHHHHHHhhhcCCcEEEecccccc-cchhhhccCceEEEEeeCCcchhh---
Q 012436 111 --------IEESTYPRFT--MIGQSFGSVYLSWEALCKFTPLYYFDTSGYAF-TYPLARIFGCRVICYTHYPTISLD--- 176 (464)
Q Consensus 111 --------~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~-~~~~~~~~~~p~v~~~h~p~~~~~--- 176 (464)
........+. ...........+.+.+++.+||+|+..+.... ...+++..++|++.+.|.......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~ 158 (415)
T 3rsc_A 79 DADAAEVFGSDDLGVRPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEHYSF 158 (415)
T ss_dssp TCCHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSSCCH
T ss_pred ccccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCcccc
Confidence 0000000000 00111122344556678889999985422222 222667899999998863321100
Q ss_pred ---hhhcccccccccCCCcccccchhhhHHHHHHHHHHHH------HHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeE
Q 012436 177 ---MISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSW------MYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIK 247 (464)
Q Consensus 177 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~ 247 (464)
.....+ .. .................. ........+|..++..+...+...... +.++.
T Consensus 159 ~~~~~~~~~-------~~----~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~ 225 (415)
T 3rsc_A 159 SQDMVTLAG-------TI----DPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTF--DDRFV 225 (415)
T ss_dssp HHHHHHHHT-------CC----CGGGCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGC--CTTEE
T ss_pred ccccccccc-------cC----ChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccC--CCceE
Confidence 000000 00 000001111111111110 001111122667766665544433322 34555
Q ss_pred EecCCCCCCCC-ccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEE-EcCCCCCccHHHHHHH
Q 012436 248 RVYPPCDTSGL-QVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQF-VGSCRNKSDEERLQSL 325 (464)
Q Consensus 248 ~i~~~~d~~~~-~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i-~G~~~~~~~~~~~~~l 325 (464)
.+.+.+..... ........+.+.++++.|+.....+ +.+-..++.+ ... ++++++ +|.+.+. +.+
T Consensus 226 ~vGp~~~~~~~~~~~~~~~~~~~~v~v~~Gs~~~~~~-~~~~~~~~al-~~~-----~~~~v~~~g~~~~~------~~l 292 (415)
T 3rsc_A 226 FVGPCFDDRRFLGEWTRPADDLPVVLVSLGTTFNDRP-GFFRDCARAF-DGQ-----PWHVVMTLGGQVDP------AAL 292 (415)
T ss_dssp ECCCCCCCCGGGCCCCCCSSCCCEEEEECTTTSCCCH-HHHHHHHHHH-TTS-----SCEEEEECTTTSCG------GGG
T ss_pred EeCCCCCCcccCcCccccCCCCCEEEEECCCCCCChH-HHHHHHHHHH-hcC-----CcEEEEEeCCCCCh------HHh
Confidence 55433321111 1101112344567778888754432 2222222222 222 477777 5544322 122
Q ss_pred HHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCcc
Q 012436 326 KDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQ 402 (464)
Q Consensus 326 ~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~ 402 (464)
+ .++++|.+.|++++. ++|+.||++|..+ ...+++||+++|+|+|+....+.- .+.+.+ .+
T Consensus 293 ~------~~~~~v~~~~~~~~~---~ll~~ad~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~---~g 356 (415)
T 3rsc_A 293 G------DLPPNVEAHRWVPHV---KVLEQATVCVTHG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQ---LG 356 (415)
T ss_dssp C------CCCTTEEEESCCCHH---HHHHHEEEEEESC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHH---HT
T ss_pred c------CCCCcEEEEecCCHH---HHHhhCCEEEECC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHH---cC
Confidence 1 236799999999654 7899999999763 236889999999999996543210 233444 56
Q ss_pred ceeecC----CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012436 403 TGFLAQ----NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRP 457 (464)
Q Consensus 403 ~g~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 457 (464)
.|..++ ++++++++|.++++ |++.++++.+.+++..+..+.+..++.+.+++.+
T Consensus 357 ~g~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 357 LGAVLPGEKADGDTLLAAVGAVAA-DPALLARVEAMRGHVRRAGGAARAADAVEAYLAR 414 (415)
T ss_dssp CEEECCGGGCCHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CEEEcccCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence 776664 89999999999999 9999998888887777778888888888777653
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.72 E-value=4.1e-16 Score=149.90 Aligned_cols=340 Identities=10% Similarity=-0.018 Sum_probs=191.1
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccc---cc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRK---WI 111 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 111 (464)
|||+++.. .++|....+..++++|.++| ++|.++++.. ..+.. ...++ .++.+.... ..
T Consensus 1 MrIl~~~~---~~~Gh~~p~~~la~~L~~~G--h~V~~~~~~~------~~~~~-~~~g~------~~~~~~~~~~~~~~ 62 (384)
T 2p6p_A 1 MRILFVAA---GSPATVFALAPLATAARNAG--HQVVMAANQD------MGPVV-TGVGL------PAVATTDLPIRHFI 62 (384)
T ss_dssp CEEEEECC---SSHHHHHHHHHHHHHHHHTT--CEEEEEECGG------GHHHH-HHTTC------CEEESCSSCHHHHH
T ss_pred CEEEEEeC---CccchHhHHHHHHHHHHHCC--CEEEEEeCHH------HHHHH-HhCCC------EEEEeCCcchHHHH
Confidence 79999843 23578888899999999999 5666665431 11111 11232 222222111 00
Q ss_pred cc------ccC-c--c-eehh-hh----c-hhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEeeCCcchh
Q 012436 112 EE------STY-P--R-FTMI-GQ----S-FGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISL 175 (464)
Q Consensus 112 ~~------~~~-~--~-~~~~-~~----~-~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~ 175 (464)
.. ..+ + . ...+ .. . ......+.+.+++.+||+||..........+++..++|++.+.|.+...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~~- 141 (384)
T 2p6p_A 63 TTDREGRPEAIPSDPVAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVDA- 141 (384)
T ss_dssp HBCTTSCBCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCC-
T ss_pred hhhcccCccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCccc-
Confidence 00 000 0 0 0000 00 0 1123445566778899999965432222236778899999877744310
Q ss_pred hhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHH-Hhh---cCCEEEEcCHHHHHHHHHHhCCCCCeEEecC
Q 012436 176 DMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGL-VGS---CADLAMVNSSWTQSHIEKLWGIPDRIKRVYP 251 (464)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~ 251 (464)
. ..... .......+... .+. .++.+++.+....+.... .+ ..++..+
T Consensus 142 ------~---------------~~~~~----~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~~~-- 192 (384)
T 2p6p_A 142 ------D---------------GIHPG----ADAELRPELSELGLERLPAPDLFIDICPPSLRPANA-AP-ARMMRHV-- 192 (384)
T ss_dssp ------T---------------TTHHH----HHHHTHHHHHHTTCSSCCCCSEEEECSCGGGSCTTS-CC-CEECCCC--
T ss_pred ------c---------------hhhHH----HHHHHHHHHHHcCCCCCCCCCeEEEECCHHHCCCCC-CC-CCceEec--
Confidence 0 00000 11111111111 011 167788777654322110 00 1122222
Q ss_pred CCCCC-CCccCCCCCCCCCcEEEEEeccCCC-------CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHH
Q 012436 252 PCDTS-GLQVLPLERSTEYPAIISVAQFRPE-------KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQ 323 (464)
Q Consensus 252 ~~d~~-~~~~~~~~~~~~~~~i~~~G~~~~~-------K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~ 323 (464)
+.+.+ ..........++..+++++|++... +.++.+++++..+ +++++++++++ ..+
T Consensus 193 ~~~~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~---------~~~~~~~~g~~------~~~ 257 (384)
T 2p6p_A 193 ATSRQCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW---------DVELIVAAPDT------VAE 257 (384)
T ss_dssp CCCCCCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT---------TCEEEEECCHH------HHH
T ss_pred CCCCCCCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHHHHHHhcC---------CcEEEEEeCCC------CHH
Confidence 11111 0000000112334678889998765 5667777776543 67888876542 113
Q ss_pred HHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCC----CccceecccC
Q 012436 324 SLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAG----PKMDIVLEED 399 (464)
Q Consensus 324 ~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~v~~~~ 399 (464)
+++. ++++|.+ |++|. .++|+.||++|.. +.+.+++|||++|+|+|+.+..+ . .+.+.+
T Consensus 258 ~l~~------~~~~v~~-~~~~~---~~~l~~~d~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~dq~~~-a~~~~~-- 320 (384)
T 2p6p_A 258 ALRA------EVPQARV-GWTPL---DVVAPTCDLLVHH----AGGVSTLTGLSAGVPQLLIPKGSVLEAP-ARRVAD-- 320 (384)
T ss_dssp HHHH------HCTTSEE-ECCCH---HHHGGGCSEEEEC----SCTTHHHHHHHTTCCEEECCCSHHHHHH-HHHHHH--
T ss_pred hhCC------CCCceEE-cCCCH---HHHHhhCCEEEeC----CcHHHHHHHHHhCCCEEEccCcccchHH-HHHHHH--
Confidence 3332 2578999 99964 4578999999976 33568999999999999998643 2 233444
Q ss_pred CccceeecC----CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 400 GQQTGFLAQ----NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 400 ~~~~g~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
.+.|+.++ ++++++++|.++++ |++.++++++.+++....-..+..++.+.+++.
T Consensus 321 -~g~g~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 321 -YGAAIALLPGEDSTEAIADSCQELQA-KDTYARRAQDLSREISGMPLPATVVTALEQLAH 379 (384)
T ss_dssp -HTSEEECCTTCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred -CCCeEecCcCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 56787764 79999999999999 999888888888777765677777776666554
No 41
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.72 E-value=1.5e-16 Score=151.65 Aligned_cols=273 Identities=10% Similarity=0.016 Sum_probs=173.9
Q ss_pred hhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEeeCCcchhhhhhcccccccccCCCcccccchhhhHHH
Q 012436 127 GSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCK 204 (464)
Q Consensus 127 ~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (464)
..+..+.+.+++.+||+|+.+......++ .++..++|++ +++.+..+ +. ..+...
T Consensus 81 ~~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~-h~eaglrs-------------~~-------~~~pee-- 137 (385)
T 4hwg_A 81 LVIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIF-HMEAGNRC-------------FD-------QRVPEE-- 137 (385)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEE-EESCCCCC-------------SC-------TTSTHH--
T ss_pred HHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCCCEE-EEeCCCcc-------------cc-------ccCcHH--
Confidence 34566777789999999986654333332 5558899964 34422110 00 000000
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCC-CCCCCc-----cC----CCCCCCCCcEEEE
Q 012436 205 IVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQ-----VL----PLERSTEYPAIIS 274 (464)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~-d~~~~~-----~~----~~~~~~~~~~i~~ 274 (464)
.. ...+-+.+|.+++.|+..++.+.+.+-.++++.++.|+. |.-.+. .. ....++++..+++
T Consensus 138 -~n-------R~~~~~~a~~~~~~te~~~~~l~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~~~~iLvt 209 (385)
T 4hwg_A 138 -IN-------RKIIDHISDVNITLTEHARRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTPKQYFLIS 209 (385)
T ss_dssp -HH-------HHHHHHHCSEEEESSHHHHHHHHHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCTTSEEEEE
T ss_pred -HH-------HHHHHhhhceeecCCHHHHHHHHHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCcCCEEEEE
Confidence 01 122236789999999999999988743367899998864 321110 00 0111223445556
Q ss_pred EeccC---CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhc-C---CCCcEEEccCCChh
Q 012436 275 VAQFR---PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL-K---VDGNVEFYKNLLYR 347 (464)
Q Consensus 275 ~G~~~---~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~-~---l~~~v~~~g~~~~~ 347 (464)
.||.+ ..|+++.+++|+..+.++. ++.+++... + .+++.++++ + ..++|.+.+.+++.
T Consensus 210 ~hr~e~~~~~~~l~~ll~al~~l~~~~-----~~~vv~p~~-p---------~~~~~l~~~~~~~~~~~~v~l~~~lg~~ 274 (385)
T 4hwg_A 210 SHREENVDVKNNLKELLNSLQMLIKEY-----NFLIIFSTH-P---------RTKKRLEDLEGFKELGDKIRFLPAFSFT 274 (385)
T ss_dssp ECCC-----CHHHHHHHHHHHHHHHHH-----CCEEEEEEC-H---------HHHHHHHTSGGGGGTGGGEEECCCCCHH
T ss_pred eCCchhcCcHHHHHHHHHHHHHHHhcC-----CeEEEEECC-h---------HHHHHHHHHHHHhcCCCCEEEEcCCCHH
Confidence 66543 3377899999999987654 566666543 1 233444433 2 23689999999989
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHcCCHH
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIISMPET 426 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~~~~~ 426 (464)
++..+|+.||+++.+| |....||+++|+|+|+.+......+.+.. +++++++ |++++++++.++++ |+.
T Consensus 275 ~~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~e~v~~----G~~~lv~~d~~~i~~ai~~ll~-d~~ 344 (385)
T 4hwg_A 275 DYVKLQMNAFCILSDS-----GTITEEASILNLPALNIREAHERPEGMDA----GTLIMSGFKAERVLQAVKTITE-EHD 344 (385)
T ss_dssp HHHHHHHHCSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCTHHHHH----TCCEECCSSHHHHHHHHHHHHT-TCB
T ss_pred HHHHHHHhCcEEEECC-----ccHHHHHHHcCCCEEEcCCCccchhhhhc----CceEEcCCCHHHHHHHHHHHHh-ChH
Confidence 9999999999999765 44679999999999998765433566655 4778886 99999999999999 887
Q ss_pred HHHHHHHHHHHH-HHccCHHHHHHHHHHHH
Q 012436 427 ERLEMAAAARRR-AARFSEQRFYEDFKAAI 455 (464)
Q Consensus 427 ~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~ 455 (464)
.+++|++++..+ ....+.+++++.+.+.+
T Consensus 345 ~~~~m~~~~~~~~g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 345 NNKRTQGLVPDYNEAGLVSKKILRIVLSYV 374 (385)
T ss_dssp TTBCCSCCCHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCCCCCChHHHHHHHHHHHHh
Confidence 776665544444 33344455555444443
No 42
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.68 E-value=2.7e-15 Score=147.13 Aligned_cols=267 Identities=12% Similarity=0.085 Sum_probs=172.0
Q ss_pred HHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEee-CCcchhhhhhcccccccccCCCcccccchhhhHHHHH
Q 012436 130 YLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTH-YPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIV 206 (464)
Q Consensus 130 ~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (464)
..+.+.+++.++||+++.+++..... ++..+-.|+-++.- +|...
T Consensus 339 ~~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPVQvs~lGyp~TT-------------------------------- 386 (631)
T 3q3e_A 339 EFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATT-------------------------------- 386 (631)
T ss_dssp HHHHHHHHHHTCSEEEESCCSSSHHHHHHTTSCCSSEEEEECSSCSCC--------------------------------
T ss_pred HHHHHHHHhcCCCEEEECCCCCCchhHHHHhCCCchheEeccCCCccc--------------------------------
Confidence 45567788999999998777654333 33366778866444 44310
Q ss_pred HHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCC---CCCCCCccC--CCCCCC--CCcEEEEEeccC
Q 012436 207 YYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPP---CDTSGLQVL--PLERST--EYPAIISVAQFR 279 (464)
Q Consensus 207 ~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~---~d~~~~~~~--~~~~~~--~~~~i~~~G~~~ 279 (464)
.+...|++++-.... . -...| .+++..+|.. .++....+. +..... +.++++.++ .
T Consensus 387 -----------Gl~~iDY~i~D~~~~-~-~~~~y--sEklirLP~~~~~~~p~~~~p~r~~~~lp~~~G~v~Fg~fn--~ 449 (631)
T 3q3e_A 387 -----------HSDFIEYVIVEDDYV-G-SEECF--SETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNIGIAS--T 449 (631)
T ss_dssp -----------CCTTCCEEEEEGGGC-C-CGGGC--SSEEEEECTTSSCCCCCTTCCSSCCCCCCSCCSEEEEEEEE--C
T ss_pred -----------CcccCCEEEeCCCCC-C-cccCc--eeeEEECCCCccccCCcccCCccccccCCcCCCeEEEEECC--c
Confidence 014567777633211 1 12333 6777777753 222211111 111112 235556665 4
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcEEE--EEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCc
Q 012436 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQ--FVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAV 357 (464)
Q Consensus 280 ~~K~~~~ll~a~~~l~~~~~~~~p~~~l~--i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad 357 (464)
..|..+.+++++.++.++. |+..+. +.|.+... . +.+.+.+.+.|+.+++.|.|.++.++....|+.+|
T Consensus 450 ~~Ki~p~~l~~WarIL~~v----P~s~L~l~~~g~~~g~-~----~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~aD 520 (631)
T 3q3e_A 450 TMKLNPYFLEALKAIRDRA----KVKVHFHFALGQSNGI-T----HPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCD 520 (631)
T ss_dssp STTCCHHHHHHHHHHHHHC----SSEEEEEEEESSCCGG-G----HHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTCS
T ss_pred cccCCHHHHHHHHHHHHhC----CCcEEEEEecCCCchh-h----HHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcCc
Confidence 6799999999999999887 565553 35643211 1 23333455677778999999999999999999999
Q ss_pred EEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceeccc---CCcccee-ecCCHHHHHHHHHHHHcCCHHHHHHHHH
Q 012436 358 VGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEE---DGQQTGF-LAQNAEEYADAIVKIISMPETERLEMAA 433 (464)
Q Consensus 358 ~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~---~~~~~g~-~~~~~~~la~~i~~l~~~~~~~~~~~~~ 433 (464)
+++.|+.+ +.|++.+|||+||+|||+....+. .+-+... ..|-.++ +.+|.+++++...++.+ |++.++++++
T Consensus 521 IfLDpfpy-~GgtTtlEALwmGVPVVTl~G~~~-asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~-D~~~l~~LR~ 597 (631)
T 3q3e_A 521 MMVNPFPF-GNTNGIIDMVTLGLVGVCKTGAEV-HEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAE-NHQERLELRR 597 (631)
T ss_dssp EEECCSSS-CCSHHHHHHHHTTCCEEEECCSSH-HHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHH-CHHHHHHHHH
T ss_pred EEEeCCcc-cCChHHHHHHHcCCCEEeccCCcH-HHHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhC-CHHHHHHHHH
Confidence 99999865 459999999999999999775544 2222100 0033444 66799999999999999 9999999999
Q ss_pred HHHHHH-H--ccCHHHHHHHHHHHHHHHH
Q 012436 434 AARRRA-A--RFSEQRFYEDFKAAIRPIL 459 (464)
Q Consensus 434 ~~~~~~-~--~~s~~~~~~~~~~~~~~~~ 459 (464)
+.++.. . -|+ ...+++.+.|++++
T Consensus 598 ~Lr~~~~~spLFd--~~~~~~e~~ye~~~ 624 (631)
T 3q3e_A 598 YIIENNGLNTLFT--GDPRPMGQVFLEKL 624 (631)
T ss_dssp HHHHSCCHHHHTC--SCCTHHHHHHHHHH
T ss_pred HHHHHhhhCCCcc--hhHHHHHHHHHHHH
Confidence 988765 3 344 34445555554444
No 43
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.65 E-value=6.2e-15 Score=144.27 Aligned_cols=157 Identities=10% Similarity=0.014 Sum_probs=114.4
Q ss_pred CCcEEEEEeccCC-----CCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc
Q 012436 268 EYPAIISVAQFRP-----EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (464)
Q Consensus 268 ~~~~i~~~G~~~~-----~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g 342 (464)
...++++.|+... .+.+..+++++..+ ++++++.+++.+. +.++ +++++|.+.|
T Consensus 267 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~---------~~~~v~~~g~~~~------~~l~------~~~~~v~~~~ 325 (441)
T 2yjn_A 267 RRRVCLTLGISSRENSIGQVSIEELLGAVGDV---------DAEIIATFDAQQL------EGVA------NIPDNVRTVG 325 (441)
T ss_dssp SCEEEEEC----------CCSTTTTHHHHHTS---------SSEEEECCCTTTT------SSCS------SCCSSEEECC
T ss_pred CCEEEEECCCCcccccChHHHHHHHHHHHHcC---------CCEEEEEECCcch------hhhc------cCCCCEEEec
Confidence 3467788898865 37888888888654 6788887765432 1111 2467999999
Q ss_pred CCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC---ccceecccCCccceeecC----CHHHHHH
Q 012436 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP---KMDIVLEEDGQQTGFLAQ----NAEEYAD 415 (464)
Q Consensus 343 ~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~---~~~~v~~~~~~~~g~~~~----~~~~la~ 415 (464)
++|+. ++|..||++|.. +.+.+++||+++|+|+|+.+..+. ..+.+.+ .+.|+.++ +++++++
T Consensus 326 ~~~~~---~ll~~ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~---~g~g~~~~~~~~~~~~l~~ 395 (441)
T 2yjn_A 326 FVPMH---ALLPTCAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQE---FGAGIALPVPELTPDQLRE 395 (441)
T ss_dssp SCCHH---HHGGGCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHH---HTSEEECCTTTCCHHHHHH
T ss_pred CCCHH---HHHhhCCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHH---cCCEEEcccccCCHHHHHH
Confidence 99764 568999999964 335789999999999999987431 0233444 56787764 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 416 AIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 416 ~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
+|.++++ |++.++++.+.+++..+..+.+.+++.+.+++.
T Consensus 396 ~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 396 SVKRVLD-DPAHRAGAARMRDDMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHH-CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999 999998888888877777888888887777654
No 44
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.62 E-value=2.8e-13 Score=131.81 Aligned_cols=375 Identities=12% Similarity=-0.003 Sum_probs=189.8
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecc--
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRR-- 108 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 108 (464)
++.+|||+++.. .+.|.-.-+..++++|.++| ++|+++++.. ...... ..|. +++.++..
T Consensus 9 ~m~~~~Il~~~~---~~~GHv~p~l~la~~L~~~G--h~V~~~~~~~---~~~~~~----~~g~------~~~~~~~~~~ 70 (424)
T 2iya_A 9 SVTPRHISFFNI---PGHGHVNPSLGIVQELVARG--HRVSYAITDE---FAAQVK----AAGA------TPVVYDSILP 70 (424)
T ss_dssp --CCCEEEEECC---SCHHHHHHHHHHHHHHHHTT--CEEEEEECGG---GHHHHH----HHTC------EEEECCCCSC
T ss_pred CcccceEEEEeC---CCCcccchHHHHHHHHHHCC--CeEEEEeCHH---HHHHHH----hCCC------EEEecCcccc
Confidence 345689999732 22478888899999999999 5666666532 111111 1133 23222211
Q ss_pred ccccc-ccCc-ce-ehh---hhch-hhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEEeeCCcchhhhhhcc
Q 012436 109 KWIEE-STYP-RF-TMI---GQSF-GSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRV 181 (464)
Q Consensus 109 ~~~~~-~~~~-~~-~~~---~~~~-~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~~~ 181 (464)
..... ...+ .. ..+ .... .....+.+.+++.+||+|+..........+++..|+|.+...+.+..........
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~ 150 (424)
T 2iya_A 71 KESNPEESWPEDQESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDV 150 (424)
T ss_dssp CTTCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHS
T ss_pred ccccchhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEeccccccccccccc
Confidence 00000 0000 00 000 0001 1223344556778999888544332233377789999998776443111110000
Q ss_pred cccccccC-C-------Ccccccchhhh--HHHHHHHHHHHHH-HH--------HHhhcCCEEEEcCHHHHHHHHHHhCC
Q 012436 182 REGSSMYN-N-------NASIAQSNWLS--QCKIVYYTFFSWM-YG--------LVGSCADLAMVNSSWTQSHIEKLWGI 242 (464)
Q Consensus 182 ~~~~~~~~-~-------~~~~~~~~~~~--~~~~~~~~~~~~~-~~--------~~~~~ad~vi~~S~~~~~~~~~~~~~ 242 (464)
......+. . ........... .....+...+... .+ .....++.+++.+....+.-... .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~ 228 (424)
T 2iya_A 151 PAVQDPTADRGEEAAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDT--V 228 (424)
T ss_dssp GGGSCCCC---------------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTTGGG--C
T ss_pred ccccccccccccccccccccccchhhhccchhHHHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCCccC--C
Confidence 00000000 0 00000000000 0000111111111 11 11124666776665443221111 1
Q ss_pred CCCeEEecCCCCCCC-CccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEE-EEcCCCCCccHH
Q 012436 243 PDRIKRVYPPCDTSG-LQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQ-FVGSCRNKSDEE 320 (464)
Q Consensus 243 ~~~i~~i~~~~d~~~-~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~-i~G~~~~~~~~~ 320 (464)
+.++..+.+...... .........++..++++.|+.. .+..+.+.++++.+.. ++++++ ++|.+.+.
T Consensus 229 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~------~~~~~~~~~g~~~~~---- 297 (424)
T 2iya_A 229 GDNYTFVGPTYGDRSHQGTWEGPGDGRPVLLIALGSAF-TDHLDFYRTCLSAVDG------LDWHVVLSVGRFVDP---- 297 (424)
T ss_dssp CTTEEECCCCCCCCGGGCCCCCCCSSCCEEEEECCSSS-CCCHHHHHHHHHHHTT------CSSEEEEECCTTSCG----
T ss_pred CCCEEEeCCCCCCcccCCCCCccCCCCCEEEEEcCCCC-cchHHHHHHHHHHHhc------CCcEEEEEECCcCCh----
Confidence 445666654432111 0000111223456777888876 3333433333343322 267774 45665422
Q ss_pred HHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC---ccceecc
Q 012436 321 RLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP---KMDIVLE 397 (464)
Q Consensus 321 ~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~---~~~~v~~ 397 (464)
+.+. .++++|.+.+++|+. ++|+.||++|.. +...+++||+++|+|+|+....+. ..+.+.+
T Consensus 298 --~~~~------~~~~~v~~~~~~~~~---~~l~~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~ 362 (424)
T 2iya_A 298 --ADLG------EVPPNVEVHQWVPQL---DILTKASAFITH----AGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE 362 (424)
T ss_dssp --GGGC------SCCTTEEEESSCCHH---HHHTTCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHH
T ss_pred --HHhc------cCCCCeEEecCCCHH---HHHhhCCEEEEC----CchhHHHHHHHcCCCEEEecCccchHHHHHHHHH
Confidence 1111 246799999999664 689999998864 234789999999999999876421 0123344
Q ss_pred cCCccceeecC----CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012436 398 EDGQQTGFLAQ----NAEEYADAIVKIISMPETERLEMAAAARRRAARFSEQRFYEDFKAAI 455 (464)
Q Consensus 398 ~~~~~~g~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 455 (464)
.+.|+..+ ++++++++|.++++ |++.++++.+.+++..+....+..++.+.+++
T Consensus 363 ---~g~g~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 363 ---LGLGRHIPRDQVTAEKLREAVLAVAS-DPGVAERLAAVRQEIREAGGARAAADILEGIL 420 (424)
T ss_dssp ---TTSEEECCGGGCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred ---CCCEEEcCcCCCCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 46777664 89999999999999 99888877777666555555666666655554
No 45
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.50 E-value=3.6e-13 Score=130.01 Aligned_cols=159 Identities=11% Similarity=0.012 Sum_probs=101.6
Q ss_pred CCCcEEEEEeccCCCCC-hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 267 TEYPAIISVAQFRPEKA-HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~-~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
++..+++..|++...++ .+.+.+++..+.. .+..+++.+.+.+.+. ...+++++.+.+++|
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~------~~~~~v~~~~~~~~~~------------~~~~~~~v~~~~~~p 297 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVAD------VDAEFVLTLGGGDLAL------------LGELPANVRVVEWIP 297 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGG------SSSEEEEECCTTCCCC------------CCCCCTTEEEECCCC
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhc------cCceEEEEecCccccc------------cccCCCCEEEEeecC
Confidence 34456677788765443 3444444444332 2667777665433211 123468999999997
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCccceeecCCHHHHHHHHHHHHc
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQTGFLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~ 422 (464)
+. ++|..+|++|.- +...+++||+++|+|+|+....+.- .+.+.+ .+.|+..++.+..+++|.++++
T Consensus 298 ~~---~lL~~~~~~v~h----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~---~G~g~~l~~~~~~~~al~~lL~ 367 (400)
T 4amg_A 298 LG---ALLETCDAIIHH----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTG---LGIGFDAEAGSLGAEQCRRLLD 367 (400)
T ss_dssp HH---HHHTTCSEEEEC----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHH---HTSEEECCTTTCSHHHHHHHHH
T ss_pred HH---HHhhhhhheecc----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHH---CCCEEEcCCCCchHHHHHHHHc
Confidence 55 568999998853 4456899999999999997655421 123334 4677777766667889999999
Q ss_pred CCHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 012436 423 MPETERLEMAAAARRRAARFSEQRFYEDFKAA 454 (464)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 454 (464)
|++.+++..+-+++....-+....++.+.++
T Consensus 368 -d~~~r~~a~~l~~~~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 368 -DAGLREAALRVRQEMSEMPPPAETAAXLVAL 398 (400)
T ss_dssp -CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 9987777666665555555777776666543
No 46
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=3.8e-11 Score=123.49 Aligned_cols=169 Identities=12% Similarity=0.091 Sum_probs=133.4
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC-CcEEEccCCChhHHHHHHhcCc
Q 012436 279 RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLLYRDLVKLLGGAV 357 (464)
Q Consensus 279 ~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~~~~~~~~l~~ad 357 (464)
...|=-..+++.+.++.++. |+-+|++....... .+.+++.+++.|+. ++|.|.+..+.++....|+.+|
T Consensus 531 ~~~Ki~p~~~~~W~~IL~~v----P~S~L~Ll~~~~~~-----~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~~D 601 (723)
T 4gyw_A 531 QLYKIDPSTLQMWANILKRV----PNSVLWLLRFPAVG-----EPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLAD 601 (723)
T ss_dssp CGGGCCHHHHHHHHHHHHHC----SSEEEEEEETTGGG-----HHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGGCS
T ss_pred ccccCCHHHHHHHHHHHHhC----CCCeEEEEeCcHHH-----HHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCCCe
Confidence 56677788999999999988 78999888765322 36788888888884 6899999999999999999999
Q ss_pred EEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccc----eecccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHHHH
Q 012436 358 VGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMD----IVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEMAA 433 (464)
Q Consensus 358 ~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~----~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~~~ 433 (464)
+++-|.- -+.+++.+||+.+|+|||+-.-...... ++... |-.-+++.|.+++.+.-.++.+ |++.+.++++
T Consensus 602 i~LDt~p-~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~--gl~e~ia~~~~~Y~~~a~~la~-d~~~l~~lr~ 677 (723)
T 4gyw_A 602 VCLDTPL-CNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCL--GCLELIAKNRQEYEDIAVKLGT-DLEYLKKVRG 677 (723)
T ss_dssp EEECCSS-SCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHH--TCGGGBCSSHHHHHHHHHHHHH-CHHHHHHHHH
T ss_pred EEeCCCC-cCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHc--CCcccccCCHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 9998743 4568899999999999998653322111 11110 2223566799999999999999 9999999998
Q ss_pred HHHHHH-H--ccCHHHHHHHHHHHHHHHHh
Q 012436 434 AARRRA-A--RFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 434 ~~~~~~-~--~~s~~~~~~~~~~~~~~~~~ 460 (464)
.-++.. . -|+.+.+++.+++.|+++..
T Consensus 678 ~l~~~~~~s~l~d~~~~~~~le~a~~~~w~ 707 (723)
T 4gyw_A 678 KVWKQRISSPLFNTKQYTMELERLYLQMWE 707 (723)
T ss_dssp HHHHHHHHSSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcCHHHHHHHHHHHHHHHHH
Confidence 887766 3 59999999999999998865
No 47
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.39 E-value=5.8e-11 Score=115.01 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=101.9
Q ss_pred CcEEEEEecc-CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEE-cCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 269 YPAIISVAQF-RPEKAHPLQLEAFSVALRKLDADLPRPRLQFV-GSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 269 ~~~i~~~G~~-~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~-G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
..++++.|+. ...+..+.++++++.+ +.+++++ |.+... . .++++++.+.+++|+
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~---------~~~~v~~~g~~~~~--------~------~~~~~~v~~~~~~~~ 295 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAH---------GRRVILSRGWADLV--------L------PDDGADCFAIGEVNH 295 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHT---------TCCEEECTTCTTCC--------C------SSCGGGEEECSSCCH
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHC---------CCeEEEEeCCCccc--------c------cCCCCCEEEeCcCCh
Confidence 4678888988 4677777777777654 4556555 654311 0 123568999999987
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCccceeecC----CHHHHHHHHHH
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQTGFLAQ----NAEEYADAIVK 419 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~~g~~~~----~~~~la~~i~~ 419 (464)
.+ +|.+||++|.. +...+++||+++|+|+|+.+..+.- .+.+.+ .+.|+..+ +.++++++|.+
T Consensus 296 ~~---~l~~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~---~g~g~~~~~~~~~~~~l~~~i~~ 365 (415)
T 1iir_A 296 QV---LFGRVAAVIHH----GGAGTTHVAARAGAPQILLPQMADQPYYAGRVAE---LGVGVAHDGPIPTFDSLSAALAT 365 (415)
T ss_dssp HH---HGGGSSEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHH---HTSEEECSSSSCCHHHHHHHHHH
T ss_pred HH---HHhhCCEEEeC----CChhHHHHHHHcCCCEEECCCCCccHHHHHHHHH---CCCcccCCcCCCCHHHHHHHHHH
Confidence 54 57999999975 2237999999999999998765420 123444 46777664 89999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 012436 420 IISMPETERLEMAAAARRRAARFSEQRFYEDFKAAIRPILC 460 (464)
Q Consensus 420 l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 460 (464)
+ + |++.++++.+.+++ +....-.++..+.++++++
T Consensus 366 l-~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 366 A-L-TPETHARATAVAGT----IRTDGAAVAARLLLDAVSR 400 (415)
T ss_dssp H-T-SHHHHHHHHHHHHH----SCSCHHHHHHHHHHHHHHT
T ss_pred H-c-CHHHHHHHHHHHHH----HhhcChHHHHHHHHHHHHh
Confidence 9 8 98776666554443 3334444555555555544
No 48
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.35 E-value=7.8e-11 Score=113.60 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=97.0
Q ss_pred CCcEEEEEeccC-CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 268 EYPAIISVAQFR-PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 268 ~~~~i~~~G~~~-~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
++.++++.|+.. ..+.++.+++++..+ ++++++.++..+.+ ..+.++++.+.+++|.
T Consensus 221 ~~~Vlv~~Gs~~~~~~~~~~~~~al~~~---------~~~vv~~~g~~~~~-------------~~~~~~~v~~~~~~~~ 278 (404)
T 3h4t_A 221 SPPVYVGFGSGPAPAEAARVAIEAVRAQ---------GRRVVLSSGWAGLG-------------RIDEGDDCLVVGEVNH 278 (404)
T ss_dssp SCCEEECCTTSCCCTTHHHHHHHHHHHT---------TCCEEEECTTTTCC-------------CSSCCTTEEEESSCCH
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHHHhC---------CCEEEEEeCCcccc-------------cccCCCCEEEecCCCH
Confidence 456777888887 556667777776654 56777765543221 1133679999999965
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCcc---ceecccCCccceeecC----CHHHHHHHHHH
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ----NAEEYADAIVK 419 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~----~~~~la~~i~~ 419 (464)
.+++..||++|..+ ...++.||+++|+|+|+....+.-. +.+.. .+.|...+ +++++++++.+
T Consensus 279 ---~~ll~~~d~~v~~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~---~G~g~~l~~~~~~~~~l~~ai~~ 348 (404)
T 3h4t_A 279 ---QVLFGRVAAVVHHG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVAD---LGVGVAHDGPTPTVESLSAALAT 348 (404)
T ss_dssp ---HHHGGGSSEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHH---HTSEEECSSSSCCHHHHHHHHHH
T ss_pred ---HHHHhhCcEEEECC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHH---CCCEeccCcCCCCHHHHHHHHHH
Confidence 45678999999652 2368999999999999987654311 12333 46666653 89999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012436 420 IISMPETERLEMAAAARRRAARFSEQRFYEDFKAAI 455 (464)
Q Consensus 420 l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 455 (464)
+++ ++.++++.+.+.+... ...+..++.+.+.+
T Consensus 349 ll~--~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 349 ALT--PGIRARAAAVAGTIRT-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HTS--HHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH
T ss_pred HhC--HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Confidence 985 4444444433332212 34444444444433
No 49
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.24 E-value=2.6e-11 Score=101.86 Aligned_cols=130 Identities=10% Similarity=0.077 Sum_probs=94.4
Q ss_pred CCcEEEEEeccC---CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 012436 268 EYPAIISVAQFR---PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (464)
Q Consensus 268 ~~~~i~~~G~~~---~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 344 (464)
...+++++|++. ..|.+..+++++..+ +.++++++++... + +++++|.+.|++
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~---------~~~~~~~~g~~~~------~---------~~~~~v~~~~~~ 76 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQI---------PQKVLWRFDGNKP------D---------TLGLNTRLYKWI 76 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTS---------SSEEEEECCSSCC------T---------TCCTTEEEESSC
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhC---------CCeEEEEECCcCc------c---------cCCCcEEEecCC
Confidence 456788899885 556677777776543 5688887765432 1 235799999999
Q ss_pred ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCccceeecC----CHHHHHHHH
Q 012436 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQTGFLAQ----NAEEYADAI 417 (464)
Q Consensus 345 ~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~~g~~~~----~~~~la~~i 417 (464)
|++++..+ +.||++|.. +.+.+++|||++|+|+|+.+..+.- .+.+.+ .+.|+.++ ++++++++|
T Consensus 77 ~~~~~l~~-~~ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~---~g~g~~~~~~~~~~~~l~~~i 148 (170)
T 2o6l_A 77 PQNDLLGH-PKTRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKA---RGAAVRVDFNTMSSTDLLNAL 148 (170)
T ss_dssp CHHHHHTS-TTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHT---TTSEEECCTTTCCHHHHHHHH
T ss_pred CHHHHhcC-CCcCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHH---cCCeEEeccccCCHHHHHHHH
Confidence 87655432 999999974 3458999999999999999865320 234455 57887775 899999999
Q ss_pred HHHHcCCHHHHHH
Q 012436 418 VKIISMPETERLE 430 (464)
Q Consensus 418 ~~l~~~~~~~~~~ 430 (464)
.++++ |++.+++
T Consensus 149 ~~ll~-~~~~~~~ 160 (170)
T 2o6l_A 149 KRVIN-DPSYKEN 160 (170)
T ss_dssp HHHHH-CHHHHHH
T ss_pred HHHHc-CHHHHHH
Confidence 99999 8864443
No 50
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.22 E-value=6.4e-10 Score=107.68 Aligned_cols=133 Identities=15% Similarity=0.080 Sum_probs=90.5
Q ss_pred CcEEEEEeccC---CCCChHHHHHHHHHHHHHhcCCCCCcEEEEE-cCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC
Q 012436 269 YPAIISVAQFR---PEKAHPLQLEAFSVALRKLDADLPRPRLQFV-GSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (464)
Q Consensus 269 ~~~i~~~G~~~---~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~-G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 344 (464)
..++++.|+.. ..+..+.++++++.+ +.+++++ |.+... . ..+++++.+.+++
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~---------~~~~v~~~g~~~~~--------~------~~~~~~v~~~~~~ 294 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ---------GRRVILSRGWTELV--------L------PDDRDDCFAIDEV 294 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT---------TCCEEEECTTTTCC--------C------SCCCTTEEEESSC
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC---------CCeEEEEeCCcccc--------c------cCCCCCEEEeccC
Confidence 45677788874 345556666666543 5566665 654211 0 1246789999999
Q ss_pred ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCccceeecC----CHHHHHHHH
Q 012436 345 LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQQTGFLAQ----NAEEYADAI 417 (464)
Q Consensus 345 ~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~~~g~~~~----~~~~la~~i 417 (464)
|. .++|..||++|.- +...+++||+++|+|+|+.+..+.- .+.+.+ .+.|...+ +.++++++|
T Consensus 295 ~~---~~ll~~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~---~g~g~~~~~~~~~~~~l~~~i 364 (416)
T 1rrv_A 295 NF---QALFRRVAAVIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAA---LGIGVAHDGPTPTFESLSAAL 364 (416)
T ss_dssp CH---HHHGGGSSEEEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHH---HTSEEECSSSCCCHHHHHHHH
T ss_pred Ch---HHHhccCCEEEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHH---CCCccCCCCCCCCHHHHHHHH
Confidence 75 4568999999963 3356999999999999998764321 122334 46676653 899999999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 012436 418 VKIISMPETERLEMAAAAR 436 (464)
Q Consensus 418 ~~l~~~~~~~~~~~~~~~~ 436 (464)
.++ + |++.++++++.++
T Consensus 365 ~~l-~-~~~~~~~~~~~~~ 381 (416)
T 1rrv_A 365 TTV-L-APETRARAEAVAG 381 (416)
T ss_dssp HHH-T-SHHHHHHHHHHTT
T ss_pred HHh-h-CHHHHHHHHHHHH
Confidence 999 8 9877666655444
No 51
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.14 E-value=3.3e-09 Score=106.46 Aligned_cols=240 Identities=13% Similarity=0.075 Sum_probs=163.1
Q ss_pred HHHHHhhcCCEEEEcCHHHHHHHHH-----Hh-CCCCCeEEecCCCCCCCCc----c-----------------------
Q 012436 214 MYGLVGSCADLAMVNSSWTQSHIEK-----LW-GIPDRIKRVYPPCDTSGLQ----V----------------------- 260 (464)
Q Consensus 214 ~~~~~~~~ad~vi~~S~~~~~~~~~-----~~-~~~~~i~~i~~~~d~~~~~----~----------------------- 260 (464)
|....+..++.|-++|+...+.++. .+ ..+.++.-+-||++...+. +
T Consensus 406 Ma~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~ 485 (796)
T 1l5w_A 406 MANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLIN 485 (796)
T ss_dssp HHHHHHHHSSEEEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGG
T ss_pred HHHHHHHhcCccccccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHH
Confidence 4567789999999999999999864 11 1267888899999764431 0
Q ss_pred ----CC----------------------------CCCCCCCcEEEEEeccCCCCChHH-HHHHHHHHHHHhcC---CCCC
Q 012436 261 ----LP----------------------------LERSTEYPAIISVAQFRPEKAHPL-QLEAFSVALRKLDA---DLPR 304 (464)
Q Consensus 261 ----~~----------------------------~~~~~~~~~i~~~G~~~~~K~~~~-ll~a~~~l~~~~~~---~~p~ 304 (464)
.+ ....++.+.++++.|+...|+.++ ++..+..+.+-..+ ...+
T Consensus 486 l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p 565 (796)
T 1l5w_A 486 LEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVP 565 (796)
T ss_dssp GGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCC
Confidence 00 001146688999999999999999 88888777652211 0126
Q ss_pred cEEEEEcCCCCCccH--HHHHHHHHHHH----hcCCCC--cEEEccCCChhHHHHHHhcCcEEEEcCC--CCCCChHHHH
Q 012436 305 PRLQFVGSCRNKSDE--ERLQSLKDKSI----ELKVDG--NVEFYKNLLYRDLVKLLGGAVVGIHSMI--DEHFGISVVE 374 (464)
Q Consensus 305 ~~l~i~G~~~~~~~~--~~~~~l~~~~~----~~~l~~--~v~~~g~~~~~~~~~~l~~ad~~v~ps~--~e~~~~~~~E 374 (464)
+++++.|.+...... ...+.+.+.++ +-..++ +|.|+...+.+-...++++||+.++||. .|++|++-+-
T Consensus 566 ~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MK 645 (796)
T 1l5w_A 566 RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMK 645 (796)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHH
T ss_pred eEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHH
Confidence 899999987543211 11122333333 113456 7999988888889999999999999998 9999999999
Q ss_pred HHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHHHHccCHHH
Q 012436 375 YMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVK-------IISMPETERLEMAAAARRRAARFSEQR 446 (464)
Q Consensus 375 a~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~-------l~~~~~~~~~~~~~~~~~~~~~~s~~~ 446 (464)
+|..|++.|++--|.. .|+.+ +.+.+|||++. +.+++.+.-.. ... ++ ..+++.+++.. ..|||+.
T Consensus 646 am~NGaL~iGtLDGan-vEi~e-~vG~~NgF~FG~~~~ev~~l~~~~y~a~~~y~~-~~-~~~~vvd~~~~--g~fs~~~ 719 (796)
T 1l5w_A 646 LALNGALTVGTLDGAN-VEIAE-KVGEENIFIFGHTVEQVKAILAKGYDPVKWRKK-DK-VLDAVLKELES--GKYSDGD 719 (796)
T ss_dssp HHHTTCEEEECSCTTH-HHHHH-HHCGGGSEECSCCHHHHHHHHHHCCCHHHHHHH-CH-HHHHHHHHHHH--TTTTTTC
T ss_pred HHHcCCeeecCcCCee-eehhh-ccCCCcEEEecCCHHHHHHHHHcccCHHHHhhc-CH-HHHHHHHHHHc--CCCCCCc
Confidence 9999999998876666 45532 22357999997 77777643222 222 33 23333333322 6799877
Q ss_pred HHHHHHHHHHHHHh
Q 012436 447 FYEDFKAAIRPILC 460 (464)
Q Consensus 447 ~~~~~~~~~~~~~~ 460 (464)
- ..+..+|++++.
T Consensus 720 ~-~~y~~Ly~~L~~ 732 (796)
T 1l5w_A 720 K-HAFDQMLHSIGK 732 (796)
T ss_dssp T-TTTHHHHHHTST
T ss_pred H-HHHHHHHHHHhc
Confidence 4 668888877653
No 52
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.84 E-value=5.5e-07 Score=90.97 Aligned_cols=198 Identities=14% Similarity=0.086 Sum_probs=139.4
Q ss_pred HHHHHhhcCCEEEEcCHHHHHHHHHH-----hC-CCCCeEEecCCCCCCCCc----c-----------------------
Q 012436 214 MYGLVGSCADLAMVNSSWTQSHIEKL-----WG-IPDRIKRVYPPCDTSGLQ----V----------------------- 260 (464)
Q Consensus 214 ~~~~~~~~ad~vi~~S~~~~~~~~~~-----~~-~~~~i~~i~~~~d~~~~~----~----------------------- 260 (464)
|....+..++.|-++|+...+.+++. +. .+.++.-+-||++...+. +
T Consensus 430 Ma~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~ 509 (824)
T 2gj4_A 430 MAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRK 509 (824)
T ss_dssp HHHHHHHTCSCEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGG
T ss_pred HHHHHHHhcCceeeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHH
Confidence 45567899999999999998888531 11 167888899999887661 0
Q ss_pred ---CCC-----------------------------CCCCCCcEEEEEeccCCCCChHHH-HHHHHHHHH--Hhc-CCCCC
Q 012436 261 ---LPL-----------------------------ERSTEYPAIISVAQFRPEKAHPLQ-LEAFSVALR--KLD-ADLPR 304 (464)
Q Consensus 261 ---~~~-----------------------------~~~~~~~~i~~~G~~~~~K~~~~l-l~a~~~l~~--~~~-~~~p~ 304 (464)
... ...++.+.++++.|+...|+.+++ +..+..+.+ ..+ ....+
T Consensus 510 L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p 589 (824)
T 2gj4_A 510 LLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVP 589 (824)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCC
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCC
Confidence 000 001456899999999999999997 777777642 211 00115
Q ss_pred cEEEEEcCCCCCccH--HHHHHHHHHHHhc----CCCC--cEEEccCCChhHHHHHHhcCcEEEEcCC--CCCCChHHHH
Q 012436 305 PRLQFVGSCRNKSDE--ERLQSLKDKSIEL----KVDG--NVEFYKNLLYRDLVKLLGGAVVGIHSMI--DEHFGISVVE 374 (464)
Q Consensus 305 ~~l~i~G~~~~~~~~--~~~~~l~~~~~~~----~l~~--~v~~~g~~~~~~~~~~l~~ad~~v~ps~--~e~~~~~~~E 374 (464)
.++++.|.+...... ...+.+.+.++.. .+++ +|.|+...+.+-...++++||+.++||. .|++|++-+-
T Consensus 590 ~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MK 669 (824)
T 2gj4_A 590 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMK 669 (824)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHH
T ss_pred EEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHH
Confidence 799999987543211 1122244444432 2345 7999988888888999999999999998 9999999999
Q ss_pred HHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHH
Q 012436 375 YMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEY 413 (464)
Q Consensus 375 a~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~l 413 (464)
+|..|++.|++--|.. -|+.+ +.+.+|||++. ..+++
T Consensus 670 amlNGaLtigtlDGan-vEi~e-~vG~~Ngf~FG~~~~ev 707 (824)
T 2gj4_A 670 FMLNGALTIGTMDGAN-VEMAE-EAGEENFFIFGMRVEDV 707 (824)
T ss_dssp HHHTTCEEEECSCTTH-HHHHH-HHCGGGSEECSCCHHHH
T ss_pred HHHcCceEEEEecCcc-chhhh-ccCCCCEEEeCCcHHHH
Confidence 9999999999876655 35532 11257899997 66665
No 53
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.84 E-value=7e-08 Score=97.04 Aligned_cols=241 Identities=13% Similarity=0.107 Sum_probs=160.9
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHH-----HhC-CCCCeEEecCCCCCCCCc----c----------------------
Q 012436 213 WMYGLVGSCADLAMVNSSWTQSHIEK-----LWG-IPDRIKRVYPPCDTSGLQ----V---------------------- 260 (464)
Q Consensus 213 ~~~~~~~~~ad~vi~~S~~~~~~~~~-----~~~-~~~~i~~i~~~~d~~~~~----~---------------------- 260 (464)
.|....+..++.|-++|+...+.++. .+. .+.++.-+-||++...+. +
T Consensus 394 nMa~lai~~S~~VNgVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l 473 (796)
T 2c4m_A 394 HMAWIACYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDEL 473 (796)
T ss_dssp EHHHHHHHHCSEEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGG
T ss_pred cHHHHHHHhcCceeeccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHH
Confidence 34567789999999999999999874 111 267888899999887772 0
Q ss_pred ------CCC----------------------------CCCCCCcEEEEEeccCCCCChHH-HHHHHHHHHHHhcC---CC
Q 012436 261 ------LPL----------------------------ERSTEYPAIISVAQFRPEKAHPL-QLEAFSVALRKLDA---DL 302 (464)
Q Consensus 261 ------~~~----------------------------~~~~~~~~i~~~G~~~~~K~~~~-ll~a~~~l~~~~~~---~~ 302 (464)
.+. ...++.+.++++.|+...|+.++ ++..+..+.+-..+ ..
T Consensus 474 ~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~ 553 (796)
T 2c4m_A 474 KKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDI 553 (796)
T ss_dssp GGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSS
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCC
Confidence 000 00145689999999999999999 88888877642111 01
Q ss_pred CCcEEEEEcCCCCCccH--HHHHHHHHHHH----hcCCCC--cEEEccCCChhHHHHHHhcCcEEEEcCC--CCCCChHH
Q 012436 303 PRPRLQFVGSCRNKSDE--ERLQSLKDKSI----ELKVDG--NVEFYKNLLYRDLVKLLGGAVVGIHSMI--DEHFGISV 372 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~--~~~~~l~~~~~----~~~l~~--~v~~~g~~~~~~~~~~l~~ad~~v~ps~--~e~~~~~~ 372 (464)
.++++++.|.+...... ...+.+.+.++ +-..++ +|.|+...+.+-...++++||+.++||. .|++|++-
T Consensus 554 ~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~ 633 (796)
T 2c4m_A 554 PARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSN 633 (796)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHH
T ss_pred CCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHH
Confidence 26899999987543211 11122333333 113466 7999988888889999999999999998 99999999
Q ss_pred HHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHH------HHcCCHHHHHHHHHHHHHHHHccCHH
Q 012436 373 VEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVK------IISMPETERLEMAAAARRRAARFSEQ 445 (464)
Q Consensus 373 ~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~------l~~~~~~~~~~~~~~~~~~~~~~s~~ 445 (464)
+-+|..|++.|++--|.. .|+.+ +.+.+|||++. +.++..+.... ... ++ ..+++.+++.. ..|||+
T Consensus 634 MKam~NGaL~iGtLDGan-vEi~e-~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~-~~-~~~~vvd~~~~--g~fs~~ 707 (796)
T 2c4m_A 634 MKFMMNGALTLGTMDGAN-VEIVD-SVGEENAYIFGARVEELPALRESYKPYELYET-VP-GLKRALDALDN--GTLNDN 707 (796)
T ss_dssp HHHHHTTCEEEEESSTHH-HHHHH-HHCGGGSEEESCCTTTHHHHHHTCCHHHHHHH-ST-THHHHHHTTTS--SSSCCT
T ss_pred HHHHHcCCeEEeccCCeE-eehhh-hcCCCcEEEecCchhhHHHHHHhhChHHHhhc-CH-HHHHHHHHHHc--CCCCCC
Confidence 999999999998876665 45532 22357999986 33333332222 111 22 12222211111 578887
Q ss_pred HHHHHHHHHHHHHHh
Q 012436 446 RFYEDFKAAIRPILC 460 (464)
Q Consensus 446 ~~~~~~~~~~~~~~~ 460 (464)
.- ..+..+|++++.
T Consensus 708 ~~-~~y~~Ly~~L~~ 721 (796)
T 2c4m_A 708 NS-GLFYDLKHSLIH 721 (796)
T ss_dssp TC-CHHHHHHHHHHS
T ss_pred CH-HHHHHHHHHHHh
Confidence 65 668888887754
No 54
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.71 E-value=1.3e-05 Score=78.04 Aligned_cols=93 Identities=15% Similarity=0.047 Sum_probs=65.6
Q ss_pred CCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cceecccCCc-cceeecC
Q 012436 335 DGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDIVLEEDGQ-QTGFLAQ 408 (464)
Q Consensus 335 ~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~v~~~~~~-~~g~~~~ 408 (464)
++++.+.+++|+. ++|+ ++|++|.- +...+++||+++|+|+|+-...+.- ...+.+ . +.|...+
T Consensus 324 ~~~~~v~~w~pq~---~vL~h~~~~~fvth----~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~---~~g~g~~l~ 393 (456)
T 2c1x_A 324 RGYGMVVPWAPQA---EVLAHEAVGAFVTH----CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVED---VLEIGVRIE 393 (456)
T ss_dssp TTTEEEESCCCHH---HHHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHH---TSCCEEECG
T ss_pred CCceEEecCCCHH---HHhcCCcCCEEEec----CCcchHHHHHHhCceEEecCChhhHHHHHHHHHH---HhCeEEEec
Confidence 4688999999764 5688 66777743 3456899999999999998754321 112233 3 5666553
Q ss_pred ----CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012436 409 ----NAEEYADAIVKIISMPETERLEMAAAARRRA 439 (464)
Q Consensus 409 ----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 439 (464)
+.++++++|.++++ |++ .+++++++++..
T Consensus 394 ~~~~~~~~l~~~i~~ll~-~~~-~~~~r~~a~~l~ 426 (456)
T 2c1x_A 394 GGVFTKSGLMSCFDQILS-QEK-GKKLRENLRALR 426 (456)
T ss_dssp GGSCCHHHHHHHHHHHHH-SHH-HHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHC-CCc-HHHHHHHHHHHH
Confidence 79999999999998 875 456666666554
No 55
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.66 E-value=2.8e-07 Score=83.00 Aligned_cols=94 Identities=14% Similarity=-0.007 Sum_probs=65.1
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHH
Q 012436 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (464)
Q Consensus 270 ~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~ 349 (464)
.+++++|..+...-.+.+++++.. . .. -.++.|.+.. ..+++++.+++. +++.+.+++ +++
T Consensus 159 ~ILv~~GG~d~~~l~~~vl~~L~~---~-----~~-i~vv~G~~~~-----~~~~l~~~~~~~---~~v~v~~~~--~~m 219 (282)
T 3hbm_A 159 DFFICMGGTDIKNLSLQIASELPK---T-----KI-ISIATSSSNP-----NLKKLQKFAKLH---NNIRLFIDH--ENI 219 (282)
T ss_dssp EEEEECCSCCTTCHHHHHHHHSCT---T-----SC-EEEEECTTCT-----THHHHHHHHHTC---SSEEEEESC--SCH
T ss_pred eEEEEECCCchhhHHHHHHHHhhc---C-----CC-EEEEECCCch-----HHHHHHHHHhhC---CCEEEEeCH--HHH
Confidence 456678876655434444444432 1 13 3456666642 236666666542 489999999 899
Q ss_pred HHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCC
Q 012436 350 VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNS 387 (464)
Q Consensus 350 ~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 387 (464)
.++|++||+.|.+ .|.++.|++++|+|.|....
T Consensus 220 ~~~m~~aDlvI~~-----gG~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 220 AKLMNESNKLIIS-----ASSLVNEALLLKANFKAICY 252 (282)
T ss_dssp HHHHHTEEEEEEE-----SSHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHCCEEEEC-----CcHHHHHHHHcCCCEEEEeC
Confidence 9999999999974 25799999999999999764
No 56
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=98.63 E-value=8.4e-05 Score=71.79 Aligned_cols=375 Identities=14% Similarity=-0.011 Sum_probs=172.7
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRR 108 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (464)
|....+.+|+++-. . . -|.-.-+.+|++.|.++|..+.|+++++.. ............ ...+++..++..
T Consensus 8 M~~~~~~hvv~~P~-p-~-~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~------~~~~~~~~~~~~-~~~i~~~~ipdg 77 (454)
T 3hbf_A 8 MNGNNLLHVAVLAF-P-F-GTHAAPLLSLVKKIATEAPKVTFSFFCTTT------TNDTLFSRSNEF-LPNIKYYNVHDG 77 (454)
T ss_dssp ----CCCEEEEECC-C-S-SSSHHHHHHHHHHHHHHCTTSEEEEEECHH------HHHHSCSSSSCC-CTTEEEEECCCC
T ss_pred ccCCCCCEEEEEcC-C-c-ccHHHHHHHHHHHHHhCCCCEEEEEEeCHH------HHHhhhcccccC-CCCceEEecCCC
Confidence 55566778887632 2 2 378888899999999999777777776431 111110000000 122344444321
Q ss_pred cccccc-c-Ccceehhhhchhh----hHHHHH-Hhhh--cCCcEEEecccccccchhhhccCceEEEEeeCCcchhhhhh
Q 012436 109 KWIEES-T-YPRFTMIGQSFGS----VYLSWE-ALCK--FTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMIS 179 (464)
Q Consensus 109 ~~~~~~-~-~~~~~~~~~~~~~----~~~~~~-~l~~--~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~p~~~~~~~~ 179 (464)
..... . -.....+..+... +....+ ++.+ .++|.|+.-....+...+++..|+|.+.++-.+........
T Consensus 78 -lp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~ 156 (454)
T 3hbf_A 78 -LPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHV 156 (454)
T ss_dssp -CCTTCCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHH
T ss_pred -CCCCccccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHH
Confidence 10000 0 0000011111111 111112 1222 36887774444444445899999999876542221111000
Q ss_pred c---cc--------cccccc---CCCcccccch---hhh-HHHHHHHHHHHHHHHHHhhcCCEEEEcCHHHHHH--HHHH
Q 012436 180 R---VR--------EGSSMY---NNNASIAQSN---WLS-QCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSH--IEKL 239 (464)
Q Consensus 180 ~---~~--------~~~~~~---~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~--~~~~ 239 (464)
. +. ...... -+-....... +.. .........+.... ...+.++.++++|-...+. +...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~iPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~-~~~~~~~~vl~ns~~eLE~~~~~~~ 235 (454)
T 3hbf_A 157 YTDLIREKTGSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMG-LELPRANAVAINSFATIHPLIENEL 235 (454)
T ss_dssp THHHHHHTCCHHHHTTSSCBCCSTTSCCBCGGGSCTTSSSCTTSHHHHHHHHHH-HHGGGSSCEEESSCGGGCHHHHHHH
T ss_pred hhHHHHhhcCCCccccccccccCCCCCCcChhhCchhhccCCchHHHHHHHHHH-HhhccCCEEEECChhHhCHHHHHHH
Confidence 0 00 000000 0000000000 000 00011222222222 2357899999988665432 2211
Q ss_pred hCCCCCeEEecCCC---CCCCCc-cCC-----CCCCCCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 012436 240 WGIPDRIKRVYPPC---DTSGLQ-VLP-----LERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFV 310 (464)
Q Consensus 240 ~~~~~~i~~i~~~~---d~~~~~-~~~-----~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~ 310 (464)
-....++..|.+-. ...... ... ....++..+++..|+.... ..+.+.+.+..+... +.+++.+
T Consensus 236 ~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~-~~~~~~el~~~l~~~------~~~flw~ 308 (454)
T 3hbf_A 236 NSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTP-PPHELTALAESLEEC------GFPFIWS 308 (454)
T ss_dssp HTTSSCEEECCCHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCC-CHHHHHHHHHHHHHH------CCCEEEE
T ss_pred HhcCCCEEEECCcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcC-CHHHHHHHHHHHHhC------CCeEEEE
Confidence 11123554443211 000000 000 0112344566777876543 334444444444433 4555554
Q ss_pred cCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCC
Q 012436 311 GSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGP 390 (464)
Q Consensus 311 G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~ 390 (464)
-..... ....+.+.+. .++++.+.+++|+. ++|+.+++.++-++ +.-.+++|++++|+|+|+-...+.
T Consensus 309 ~~~~~~--~~lp~~~~~~-----~~~~~~vv~w~Pq~---~vL~h~~v~~fvtH--~G~~S~~Eal~~GvP~i~~P~~~D 376 (454)
T 3hbf_A 309 FRGDPK--EKLPKGFLER-----TKTKGKIVAWAPQV---EILKHSSVGVFLTH--SGWNSVLECIVGGVPMISRPFFGD 376 (454)
T ss_dssp CCSCHH--HHSCTTHHHH-----TTTTEEEESSCCHH---HHHHSTTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTT
T ss_pred eCCcch--hcCCHhHHhh-----cCCceEEEeeCCHH---HHHhhcCcCeEEec--CCcchHHHHHHcCCCEecCccccc
Confidence 332210 0000111111 24688889999763 67888995443322 335689999999999999875432
Q ss_pred c---cceecccCCc-cceeecC----CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012436 391 K---MDIVLEEDGQ-QTGFLAQ----NAEEYADAIVKIISMPETERLEMAAAARRRA 439 (464)
Q Consensus 391 ~---~~~v~~~~~~-~~g~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 439 (464)
- ...+.+ . +.|...+ +.+++.++|.++++ ++ ..+++++++++..
T Consensus 377 Q~~Na~~v~~---~~g~Gv~l~~~~~~~~~l~~av~~ll~-~~-~~~~~r~~a~~l~ 428 (454)
T 3hbf_A 377 QGLNTILTES---VLEIGVGVDNGVLTKESIKKALELTMS-SE-KGGIMRQKIVKLK 428 (454)
T ss_dssp HHHHHHHHHT---TSCSEEECGGGSCCHHHHHHHHHHHHS-SH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hhCeeEEecCCCCCHHHHHHHHHHHHC-CC-hHHHHHHHHHHHH
Confidence 0 112222 2 5665553 89999999999998 74 3345555555443
No 57
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=98.59 E-value=4.3e-05 Score=75.02 Aligned_cols=148 Identities=12% Similarity=-0.025 Sum_probs=88.6
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCC--CccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN--KSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~--~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
+..+++..|+... ...+.+.+.+..+... +.+++++-.... .+.....+.+.+.. ++++.+.+++|
T Consensus 295 ~~vv~vs~GS~~~-~~~~~~~~~~~~l~~~------~~~~l~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~v~~~~p 362 (482)
T 2pq6_A 295 GSVVYVNFGSTTV-MTPEQLLEFAWGLANC------KKSFLWIIRPDLVIGGSVIFSSEFTNEI-----ADRGLIASWCP 362 (482)
T ss_dssp TCEEEEECCSSSC-CCHHHHHHHHHHHHHT------TCEEEEECCGGGSTTTGGGSCHHHHHHH-----TTTEEEESCCC
T ss_pred CceEEEecCCccc-CCHHHHHHHHHHHHhc------CCcEEEEEcCCccccccccCcHhHHHhc-----CCCEEEEeecC
Confidence 3456667777643 2344444444444332 566666543210 00000112222222 46899999997
Q ss_pred hhHHHHHHhcCcE--EEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCcc---c-eecccCCccceeecC---CHHHHHHH
Q 012436 346 YRDLVKLLGGAVV--GIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKM---D-IVLEEDGQQTGFLAQ---NAEEYADA 416 (464)
Q Consensus 346 ~~~~~~~l~~ad~--~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~---~-~v~~~~~~~~g~~~~---~~~~la~~ 416 (464)
+. ++|+.+++ +|. -+...+++||+++|+|+|+-...+.-. . ++.. .+.|+..+ +.+++.++
T Consensus 363 q~---~~L~h~~~~~~vt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~---~G~g~~l~~~~~~~~l~~~ 432 (482)
T 2pq6_A 363 QD---KVLNHPSIGGFLT----HCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNE---WEIGMEIDTNVKREELAKL 432 (482)
T ss_dssp HH---HHHTSTTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHT---SCCEEECCSSCCHHHHHHH
T ss_pred HH---HHhcCCCCCEEEe----cCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHH---hCEEEEECCCCCHHHHHHH
Confidence 65 47877666 552 244568999999999999987653311 1 1223 45666554 89999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q 012436 417 IVKIISMPETERLEMAAAARRRA 439 (464)
Q Consensus 417 i~~l~~~~~~~~~~~~~~~~~~~ 439 (464)
|.++++ |++ .+++++++++..
T Consensus 433 i~~ll~-~~~-~~~~r~~a~~l~ 453 (482)
T 2pq6_A 433 INEVIA-GDK-GKKMKQKAMELK 453 (482)
T ss_dssp HHHHHT-SHH-HHHHHHHHHHHH
T ss_pred HHHHHc-CCc-HHHHHHHHHHHH
Confidence 999998 886 456777776655
No 58
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=98.51 E-value=0.0005 Score=66.98 Aligned_cols=133 Identities=12% Similarity=-0.040 Sum_probs=76.6
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
+..+++..|+....-+.+.+.+++..+... +.+++++-+..... ..+.+.+.... .+++.+.+++|+.
T Consensus 276 ~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~------~~~~l~~~~~~~~~---l~~~~~~~~~~---~~~~~v~~w~pq~ 343 (463)
T 2acv_A 276 KSVVFLCFGSMGVSFGPSQIREIALGLKHS------GVRFLWSNSAEKKV---FPEGFLEWMEL---EGKGMICGWAPQV 343 (463)
T ss_dssp TCEEEEECCSSCCCCCHHHHHHHHHHHHHH------TCEEEEECCCCGGG---SCTTHHHHHHH---HCSEEEESSCCHH
T ss_pred CceEEEEeccccccCCHHHHHHHHHHHHhC------CCcEEEEECCCccc---CChhHHHhhcc---CCCEEEEccCCHH
Confidence 345667777765222334444444444332 55665554321000 00112211100 2478888999765
Q ss_pred HHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cce-ecccCCccceeec---------C-CHH
Q 012436 348 DLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDI-VLEEDGQQTGFLA---------Q-NAE 411 (464)
Q Consensus 348 ~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~-v~~~~~~~~g~~~---------~-~~~ 411 (464)
++|+ ++|++|.- +...+++||+++|+|+|+-...+.- ... +.. .+.|+.. . +.+
T Consensus 344 ---~vL~h~~~~~fvth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~---~g~g~~l~~~~~~~~~~~~~~ 413 (463)
T 2acv_A 344 ---EVLAHKAIGGFVSH----CGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE---WGVGLGLRVDYRKGSDVVAAE 413 (463)
T ss_dssp ---HHHHSTTEEEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHT---SCCEEESCSSCCTTCCCCCHH
T ss_pred ---HHhCCCccCeEEec----CCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHH---cCeEEEEecccCCCCccccHH
Confidence 4576 67777743 3457899999999999998764321 112 233 4666554 2 789
Q ss_pred HHHHHHHHHHc
Q 012436 412 EYADAIVKIIS 422 (464)
Q Consensus 412 ~la~~i~~l~~ 422 (464)
++.++|.++++
T Consensus 414 ~l~~ai~~ll~ 424 (463)
T 2acv_A 414 EIEKGLKDLMD 424 (463)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 59
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=98.28 E-value=0.0013 Score=64.22 Aligned_cols=92 Identities=13% Similarity=0.001 Sum_probs=58.6
Q ss_pred EEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCc---cce-ecccCCccceeec------
Q 012436 338 VEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPK---MDI-VLEEDGQQTGFLA------ 407 (464)
Q Consensus 338 v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~-v~~~~~~~~g~~~------ 407 (464)
+.+.+++|+. ++|+.+++.++-+ -+.-.+++||+++|+|+|+-...+.- ... +.. -+.|...
T Consensus 341 ~~v~~w~Pq~---~vL~h~~v~~fvt--HgG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~---~G~g~~l~~~~~~ 412 (480)
T 2vch_A 341 FVIPFWAPQA---QVLAHPSTGGFLT--HCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSED---IRAALRPRAGDDG 412 (480)
T ss_dssp EEEESCCCHH---HHHHSTTEEEEEE--CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHT---TCCEECCCCCTTS
T ss_pred EEEeCccCHH---HHhCCCCcCeEEe--cccchhHHHHHHcCCCEEeccccccchHHHHHHHHH---hCeEEEeecccCC
Confidence 4555799764 6799888633332 23356899999999999998754320 111 223 3555443
Q ss_pred C-CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012436 408 Q-NAEEYADAIVKIISMPETERLEMAAAARRRA 439 (464)
Q Consensus 408 ~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 439 (464)
. +.++++++|.++++ +. .-.++++++++..
T Consensus 413 ~~~~~~l~~av~~vl~-~~-~~~~~r~~a~~l~ 443 (480)
T 2vch_A 413 LVRREEVARVVKGLME-GE-EGKGVRNKMKELK 443 (480)
T ss_dssp CCCHHHHHHHHHHHHT-ST-HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhc-Cc-chHHHHHHHHHHH
Confidence 2 78999999999996 54 3334555555443
No 60
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=98.12 E-value=0.00014 Score=68.07 Aligned_cols=100 Identities=12% Similarity=0.016 Sum_probs=65.7
Q ss_pred CcEEEEEec-cCCCCCh--HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcC--C-CCcEEEcc
Q 012436 269 YPAIISVAQ-FRPEKAH--PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELK--V-DGNVEFYK 342 (464)
Q Consensus 269 ~~~i~~~G~-~~~~K~~--~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~--l-~~~v~~~g 342 (464)
+.+++..|. ..+.|.. +.+.++++.+.++ ++++++.|...+ . +..++..+..+ . ...+.+.|
T Consensus 181 ~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~------~~~vvl~g~~~e---~---~~~~~i~~~~~~~~~~~~~~l~g 248 (348)
T 1psw_A 181 PMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE------GYQVVLFGSAKD---H---EAGNEILAALNTEQQAWCRNLAG 248 (348)
T ss_dssp CEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT------TCEEEECCCGGG---H---HHHHHHHTTSCHHHHTTEEECTT
T ss_pred cEEEEECCCCccccCCCCHHHHHHHHHHHHHC------CCeEEEEeChhh---H---HHHHHHHHhhhhccccceEeccC
Confidence 356666676 4455554 4788888877664 678888886532 1 22222322221 0 12356789
Q ss_pred CCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEe
Q 012436 343 NLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAH 385 (464)
Q Consensus 343 ~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 385 (464)
..+-.|+..+++.||++|... + | .+-.|.++|+|+|+-
T Consensus 249 ~~sl~e~~ali~~a~l~I~~D---s-g-~~HlAaa~g~P~v~l 286 (348)
T 1psw_A 249 ETQLDQAVILIAACKAIVTND---S-G-LMHVAAALNRPLVAL 286 (348)
T ss_dssp TSCHHHHHHHHHTSSEEEEES---S-H-HHHHHHHTTCCEEEE
T ss_pred cCCHHHHHHHHHhCCEEEecC---C-H-HHHHHHHcCCCEEEE
Confidence 888999999999999999763 2 2 343499999999984
No 61
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=98.11 E-value=0.00047 Score=63.83 Aligned_cols=135 Identities=15% Similarity=0.089 Sum_probs=79.3
Q ss_pred CCcEEEEEeccCCCCCh--HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 268 EYPAIISVAQFRPEKAH--PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~--~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
++.+.+..|.-.+.|.. +.+.+.++.+.+ .++++++.++++. + .+..++..+.. +++.+.|..+
T Consensus 178 ~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~------~~~~vvl~~g~~~--e---~~~~~~i~~~~---~~~~l~g~~s 243 (326)
T 2gt1_A 178 GEYAVFLHATTRDDKHWPEEHWRELIGLLAD------SGIRIKLPWGAPH--E---EERAKRLAEGF---AYVEVLPKMS 243 (326)
T ss_dssp TSEEEEECCCSSGGGSCCHHHHHHHHHHTTT------TCCEEEECCSSHH--H---HHHHHHHHTTC---TTEEECCCCC
T ss_pred CCEEEEEeCCCCccccCCHHHHHHHHHHHHH------CCCcEEEecCCHH--H---HHHHHHHHhhC---CcccccCCCC
Confidence 33556666765555654 466666666643 2678888743331 1 12233333322 2467889889
Q ss_pred hhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccceecccCC------ccceeecC-CHHHHHHHHH
Q 012436 346 YRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDG------QQTGFLAQ-NAEEYADAIV 418 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~------~~~g~~~~-~~~~la~~i~ 418 (464)
-.|+..+++.||++|.. ++ |..=+ |.|+|+|+|+--.... +........ +....+.+ +++++.+++.
T Consensus 244 l~el~ali~~a~l~I~~---DS-G~~Hl-Aaa~g~P~v~lfg~t~-p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~ 317 (326)
T 2gt1_A 244 LEGVARVLAGAKFVVSV---DT-GLSHL-TAALDRPNITVYGPTD-PGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIE 317 (326)
T ss_dssp HHHHHHHHHTCSEEEEE---SS-HHHHH-HHHTTCCEEEEESSSC-HHHHCCCSSSEEEEECGGGCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEec---CC-cHHHH-HHHcCCCEEEEECCCC-hhhcCCCCCCceEecCCcccccCCCHHHHHHHHH
Confidence 99999999999999976 33 33334 7779999998521111 111111000 11122233 8999999998
Q ss_pred HHHc
Q 012436 419 KIIS 422 (464)
Q Consensus 419 ~l~~ 422 (464)
++++
T Consensus 318 ~~l~ 321 (326)
T 2gt1_A 318 ENAE 321 (326)
T ss_dssp HTTT
T ss_pred HHHH
Confidence 8886
No 62
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.08 E-value=0.00011 Score=76.14 Aligned_cols=208 Identities=11% Similarity=0.055 Sum_probs=115.4
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCCC-CCeEEecCCCCCC--CCccC-----------CCCCCCCCcEEEEEeccCCCC--
Q 012436 219 GSCADLAMVNSSWTQSHIEKLWGIP-DRIKRVYPPCDTS--GLQVL-----------PLERSTEYPAIISVAQFRPEK-- 282 (464)
Q Consensus 219 ~~~ad~vi~~S~~~~~~~~~~~~~~-~~i~~i~~~~d~~--~~~~~-----------~~~~~~~~~~i~~~G~~~~~K-- 282 (464)
.+..|.+++.|+...+.+.+.++.. .++ +..|..-. .+... .....+++++|+|+-++....
T Consensus 476 ~~~~D~~~~~s~~~~~~~~~~f~~~~~~i--~~~G~PR~D~l~~~~~~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~ 553 (729)
T 3l7i_A 476 TSRWDYLISPNRYSTEIFRSAFWMDEERI--LEIGYPRNDVLVNRANDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFV 553 (729)
T ss_dssp HTTCSEEEESSHHHHHHHHHHTCCCGGGE--EESCCGGGHHHHHSTTCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCC
T ss_pred hccCCEEEeCCHHHHHHHHHHhCCCcceE--EEcCCCchHHHhcccchHHHHHHHHHHhCCCCCCeEEEEeeeeeCCccc
Confidence 4788999999999999999998874 455 44443211 11000 011235678999998776531
Q ss_pred --C-----hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc
Q 012436 283 --A-----HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (464)
Q Consensus 283 --~-----~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ 355 (464)
+ ...-++.+.+... +++.+++-... .+.......+..+.+.-.... .++.++|..
T Consensus 554 ~~~~~~~~~~~~~~~l~~~l~------~~~~li~r~Hp----------~~~~~~~~~~~~~~~~~~~~~--~di~~ll~~ 615 (729)
T 3l7i_A 554 SKGKYLFELKIDLDNLYKELG------DDYVILLRMHY----------LISNALDLSGYENFAIDVSNY--NDVSELFLI 615 (729)
T ss_dssp GGGSSCCCCTTCHHHHHHHHT------TTEEEEECCCH----------HHHTTCCCTTCTTTEEECTTC--SCHHHHHHT
T ss_pred cccccccchhhHHHHHHHHcC------CCeEEEEecCc----------chhccccccccCCcEEeCCCC--cCHHHHHHH
Confidence 1 1112233332221 26666664431 111111111223444444433 689999999
Q ss_pred CcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCC---------CCccceecccCCccceeecCCHHHHHHHHHHHHcCCHH
Q 012436 356 AVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSA---------GPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPET 426 (464)
Q Consensus 356 ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~---------~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~ 426 (464)
||++|. .++-+++|++..++|||..... |...++ .+ ..-|-++.+.+++.++|..... .++
T Consensus 616 aD~lIT-----DySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~-~~---~~pg~~~~~~~eL~~~i~~~~~-~~~ 685 (729)
T 3l7i_A 616 SDCLIT-----DYSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMNY-ME---DLPGPIYTEPYGLAKELKNLDK-VQQ 685 (729)
T ss_dssp CSEEEE-----SSCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSCT-TS---SSSSCEESSHHHHHHHHTTHHH-HHH
T ss_pred hCEEEe-----echHHHHhHHhhCCCEEEecCCHHHHhhccCCcccCh-hH---hCCCCeECCHHHHHHHHhhhhc-cch
Confidence 999983 4677999999999999987322 111111 11 2345566699999999987765 443
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012436 427 ERLEMAAAARRRAARFSEQRFYEDFKAAIR 456 (464)
Q Consensus 427 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 456 (464)
...+..+.-++..-.|+-.+.++++.+.+-
T Consensus 686 ~~~~~~~~~~~~~~~~~dg~as~ri~~~i~ 715 (729)
T 3l7i_A 686 QYQEKIDAFYDRFCSVDNGKASQYIGDLIH 715 (729)
T ss_dssp HTHHHHHHHHHHHSTTCCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCccCChHHHHHHHHHH
Confidence 333322222222212333345555555443
No 63
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.99 E-value=0.00044 Score=64.64 Aligned_cols=100 Identities=12% Similarity=0.034 Sum_probs=68.2
Q ss_pred CcEEEEEeccCCCCC--hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 269 YPAIISVAQFRPEKA--HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~--~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
+.+.+..|.-.+.|. .+.+.+.++.+.++ +.++++.|+..+. +..++..+..+ ...+.+.|..+-
T Consensus 186 ~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~------g~~vvl~g~~~e~------~~~~~i~~~~~-~~~~~l~g~~sl 252 (349)
T 3tov_A 186 ILIGFNIGSAVPEKRWPAERFAHVADYFGRL------GYKTVFFGGPMDL------EMVQPVVEQME-TKPIVATGKFQL 252 (349)
T ss_dssp CEEEEECCCSSGGGCCCHHHHHHHHHHHHHH------TCEEEECCCTTTH------HHHHHHHHTCS-SCCEECTTCCCH
T ss_pred CEEEEeCCCCCccCCCCHHHHHHHHHHHHhC------CCeEEEEeCcchH------HHHHHHHHhcc-cccEEeeCCCCH
Confidence 345566676555554 46778888877765 5788888865432 33344444443 234777899999
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
.|+..+++.||++|.+ ++ |..-+ |.++|+|+|+--
T Consensus 253 ~e~~ali~~a~~~i~~---Ds-G~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 253 GPLAAAMNRCNLLITN---DS-GPMHV-GISQGVPIVALY 287 (349)
T ss_dssp HHHHHHHHTCSEEEEE---SS-HHHHH-HHTTTCCEEEEC
T ss_pred HHHHHHHHhCCEEEEC---CC-CHHHH-HHhcCCCEEEEE
Confidence 9999999999999976 33 33334 899999999964
No 64
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.58 E-value=0.0022 Score=55.12 Aligned_cols=74 Identities=8% Similarity=-0.109 Sum_probs=52.2
Q ss_pred cEEEccCCChhHHHHHHh-cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCCCccc-------eecccCCccceeecC
Q 012436 337 NVEFYKNLLYRDLVKLLG-GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAGPKMD-------IVLEEDGQQTGFLAQ 408 (464)
Q Consensus 337 ~v~~~g~~~~~~~~~~l~-~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~-------~v~~~~~~~~g~~~~ 408 (464)
++...+++ +++.++|+ .||++|.- +...+++|++++|+|.|.-.......+ .+.+ .+.++..
T Consensus 115 ~v~v~~f~--~~m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~---~G~~~~~- 184 (224)
T 2jzc_A 115 KVIGFDFS--TKMQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVE---LGYVWSC- 184 (224)
T ss_dssp EEEECCSS--SSHHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHH---HSCCCEE-
T ss_pred eEEEeecc--chHHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHH---CCCEEEc-
Confidence 56677888 89999999 99999954 446789999999999999775432111 1222 2334433
Q ss_pred CHHHHHHHHHHH
Q 012436 409 NAEEYADAIVKI 420 (464)
Q Consensus 409 ~~~~la~~i~~l 420 (464)
++++++++|.++
T Consensus 185 ~~~~L~~~i~~l 196 (224)
T 2jzc_A 185 APTETGLIAGLR 196 (224)
T ss_dssp CSCTTTHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 677788888776
No 65
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=96.28 E-value=0.055 Score=54.95 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=99.6
Q ss_pred CCCcEEEEEeccCCCCChHH-HHHHHHHH---HHH------hcCC---CCCcEEEEEcCCCCCccHHHHHHHHHHHHhc-
Q 012436 267 TEYPAIISVAQFRPEKAHPL-QLEAFSVA---LRK------LDAD---LPRPRLQFVGSCRNKSDEERLQSLKDKSIEL- 332 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~-ll~a~~~l---~~~------~~~~---~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~- 332 (464)
++...++++-|+..+|...+ ++..+..+ +.. .... ..+.++++.|...... ..-+.+.+++.+.
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y--~~aK~iIklI~~va 675 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGY--YMAKLIIKLINCVA 675 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTC--HHHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCc--HHHHHHHHHHHHHH
Confidence 34678899999999999888 56554433 333 1000 1267888888753221 1223333333322
Q ss_pred -------CCCC--cEEEccCCChhHHHHHHhcCcEEEEcCC--CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCc
Q 012436 333 -------KVDG--NVEFYKNLLYRDLVKLLGGAVVGIHSMI--DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQ 401 (464)
Q Consensus 333 -------~l~~--~v~~~g~~~~~~~~~~l~~ad~~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~ 401 (464)
.+.+ +|.|+....-.-...++.+||+-...|. .|..|++-+-+|..|.+.|++--|.. -|+. ++.+.
T Consensus 676 ~~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGan-vEi~-e~vG~ 753 (879)
T 1ygp_A 676 DIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGAN-VEIT-REIGE 753 (879)
T ss_dssp HHHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHH-HHHH-HHHCG
T ss_pred HHhccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchh-HHHH-HHcCc
Confidence 2344 7999998888888899999999988774 89999999999999999999987766 4664 22335
Q ss_pred cceeecC-CHHHHHH
Q 012436 402 QTGFLAQ-NAEEYAD 415 (464)
Q Consensus 402 ~~g~~~~-~~~~la~ 415 (464)
+|+|++. +.+++.+
T Consensus 754 eN~fiFG~~~~ev~~ 768 (879)
T 1ygp_A 754 DNVFLFGNLSENVEE 768 (879)
T ss_dssp GGSEEESCCHHHHHH
T ss_pred ccEEEccCCHHHHHH
Confidence 7889887 6555543
No 66
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=90.15 E-value=9.9 Score=33.94 Aligned_cols=157 Identities=11% Similarity=-0.020 Sum_probs=82.5
Q ss_pred HHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCccCCCCCCCCCcEEEEEeccCCCCChHHHHHHHHHHH
Q 012436 216 GLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVAL 295 (464)
Q Consensus 216 ~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~l~ 295 (464)
+..-...|.|++.+....+.+.... .++-++..++..................+..+. ..-.++..++.+.++.
T Consensus 64 ~l~~~~~DlIiai~t~aa~a~~~~~---~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~---~~~~~~~~l~l~~~l~ 137 (302)
T 3lkv_A 64 QFVGENPDVLVGIATPTAQALVSAT---KTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS---DLSPVEQHVELIKEIL 137 (302)
T ss_dssp HHHTTCCSEEEEESHHHHHHHHHHC---SSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE---CCCCHHHHHHHHHHHS
T ss_pred HHHhcCCcEEEEcCCHHHHHHHhhc---CCCCeEEEecCCcchhhhcccccCCCCcEEEEE---CCcCHHHHHHHHHHhC
Confidence 4445789999999888887776653 233334333322111111111111112333332 2223566677776664
Q ss_pred HHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHH----HhcCcEEEEcCCCC---CC
Q 012436 296 RKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKL----LGGAVVGIHSMIDE---HF 368 (464)
Q Consensus 296 ~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~----l~~ad~~v~ps~~e---~~ 368 (464)
.. --++.++++..+.......+.+++.++++|+. +......+..++.+. ....|+++.+.... ..
T Consensus 138 P~------~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~~~~~~ 209 (302)
T 3lkv_A 138 PN------VKSIGVVYNPGEANAVSLMELLKLSAAKHGIK--LVEATALKSADVQSATQAIAEKSDVIYALIDNTVASAI 209 (302)
T ss_dssp TT------CCEEEEEECTTCHHHHHHHHHHHHHHHHTTCE--EEEEECSSGGGHHHHHHHHHTTCSEEEECSCHHHHHTH
T ss_pred CC------CCEEEEEeCCCcccHHHHHHHHHHHHHHcCCE--EEEEecCChHHHHHHHHhccCCeeEEEEeCCcchhhHH
Confidence 32 22565666544433334557788888888763 444443344444444 45688877764211 11
Q ss_pred ChHHHHHHHhCCcEEEeC
Q 012436 369 GISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 369 ~~~~~Ea~a~G~PvI~~~ 386 (464)
.....-+...++|+++..
T Consensus 210 ~~i~~~~~~~~iPv~~~~ 227 (302)
T 3lkv_A 210 EGMIVAANQAKTPVFGAA 227 (302)
T ss_dssp HHHHHHHHHTTCCEEESS
T ss_pred HHHHHHHhhcCCceeecc
Confidence 122344667899999865
No 67
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=87.07 E-value=12 Score=30.95 Aligned_cols=163 Identities=12% Similarity=0.091 Sum_probs=102.1
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC---------------C
Q 012436 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD---------------G 336 (464)
Q Consensus 272 i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~---------------~ 336 (464)
=-++||-..+||+-.+.+.-+++.+-. .-.-++-|-... ..+. .+++.|++ +
T Consensus 200 nrwigrtttwkgfyqmfdfhekflkpa-----gkstvmeglers-------pafi-aikekgipyeyygnreidkmnlap 266 (401)
T 1xv5_A 200 NRWIGRTTTWKGFYQMFDFHEKFLKPA-----GKSTVMEGLERS-------PAFI-AIKEKGIPYEYYGNREIDKMNLAP 266 (401)
T ss_dssp EEEECCSCGGGCHHHHHHHHHHTTTTT-----TCEEEEECCCCS-------HHHH-HHHHTTCCEEEECGGGGGGCCCSS
T ss_pred hhhhcccchhHhHHHHhhHHHHhcCcc-----chhhhhhhhhcC-------CceE-EEcccCCchhhcCcchhhhhcCCC
Confidence 358899999999999998887765532 223344443321 1111 12333333 2
Q ss_pred c--EEEccCCChhHHHHHHhcCcEEEEcCC------CCCCChHHHHHHHhCCcEEEeCCCCC-c------cceecccCCc
Q 012436 337 N--VEFYKNLLYRDLVKLLGGAVVGIHSMI------DEHFGISVVEYMAAGAIPIAHNSAGP-K------MDIVLEEDGQ 401 (464)
Q Consensus 337 ~--v~~~g~~~~~~~~~~l~~ad~~v~ps~------~e~~~~~~~Ea~a~G~PvI~~~~~~~-~------~~~v~~~~~~ 401 (464)
| ..++.-.-..|+.+-++.+.+....|. ....-.+-+|--|||+-.+--...|. . .-+.. .
T Consensus 267 nqpaqildcyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntplts----h 342 (401)
T 1xv5_A 267 NQPAQILDCYINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTS----H 342 (401)
T ss_dssp SCCEEEESCCCHHHHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGG----S
T ss_pred CCcchhhhheecHHHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcccc----c
Confidence 1 233333445788899999988877663 33566778999999996664321111 0 01112 2
Q ss_pred cceee-cC--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HccCHHHHHHHHH
Q 012436 402 QTGFL-AQ--NAEEYADAIVKIISMPETERLEMAAAARRRA-ARFSEQRFYEDFK 452 (464)
Q Consensus 402 ~~g~~-~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~ 452 (464)
..|++ ++ |.+.--+.|.++.. |...+.+-.+.+.+++ ++-+..-+.+.-.
T Consensus 343 dsgiiwfdendmestferikelss-dralydrerekayeflyqhqdssfcfkeqf 396 (401)
T 1xv5_A 343 DSGIIWFDENDMESTFERIKELSS-DRALYDREREKAYEFLYQHQDSSFCFKEQF 396 (401)
T ss_dssp CCSCEEECTTCHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHBHHHHHHHHH
T ss_pred CCceEEecCCchHHHHHHHHHhcc-chhhhhHHHHHHHHHHHhcccccchhHhhc
Confidence 44532 33 89999999999999 9999999999999988 6655555444433
No 68
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=82.24 E-value=36 Score=32.52 Aligned_cols=107 Identities=18% Similarity=0.141 Sum_probs=58.7
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCcc--------------HHHHHHHHHHHHhcCCCC
Q 012436 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSD--------------EERLQSLKDKSIELKVDG 336 (464)
Q Consensus 271 ~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~--------------~~~~~~l~~~~~~~~l~~ 336 (464)
.+.++|. .++++.+.+.+....+ +.-+++|+|+|.-... +.-.+..+.+++++ ++
T Consensus 211 ~v~~i~~---~~~i~~~~~~~g~~~~------~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l--~~ 279 (461)
T 4g65_A 211 EVFFVAA---SNHIRSVMSELQRLEK------PYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL--EN 279 (461)
T ss_dssp EEEEEEE---TTTHHHHHHHTTGGGS------CCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC--TT
T ss_pred EEEEEec---cchHHHHHHhhccccc------cccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC--CC
Confidence 3444543 3455665555543211 2447888888732100 00113344445554 34
Q ss_pred cEEEccCCChhHHHH--HHhcCcEEEEcCCCC-CCChHHHHHHHhCCcEEEeCCC
Q 012436 337 NVEFYKNLLYRDLVK--LLGGAVVGIHSMIDE-HFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 337 ~v~~~g~~~~~~~~~--~l~~ad~~v~ps~~e-~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
-+.+.|.-.+.++.. =+..+|+++..+..+ .-=++.+-|-.+|.+-+.+...
T Consensus 280 ~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn 334 (461)
T 4g65_A 280 TIVFCGDAADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQ 334 (461)
T ss_dssp SEEEESCTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred ceEEeccccchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCcccccccc
Confidence 566778776666554 357899988775433 2223456677889887776544
No 69
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=80.70 E-value=4.9 Score=34.91 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=27.0
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
|.++++|||++.....- ...-+..|+++|.+ + ++|++..+..+
T Consensus 6 ~~~~~~m~ILlTNDDGi----~apGi~aL~~~l~~-~--~~V~VVAP~~~ 48 (261)
T 3ty2_A 6 KTATPKLRLLLSNDDGV----YAKGLAILAKTLAD-L--GEVDVVAPDRN 48 (261)
T ss_dssp -----CCEEEEECSSCT----TCHHHHHHHHHHTT-T--SEEEEEEESSC
T ss_pred hccCCCCeEEEEcCCCC----CCHHHHHHHHHHHh-c--CCEEEEecCCC
Confidence 45677799999876532 34457788899988 5 46777777653
No 70
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=80.62 E-value=26 Score=30.79 Aligned_cols=45 Identities=4% Similarity=0.011 Sum_probs=28.9
Q ss_pred cccccccceEEEecCCCCCCCCcc-hhhHHHHHHhhhhCCCCceEEEcc
Q 012436 28 NARRNRTTSVAFFHPNTNDGGGGE-RVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 28 ~~~~~~~mkI~~~~~~~~~~GG~~-~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
..++.+..+|+++.+..... -.. .++..+.+++.+.| +++.++..
T Consensus 7 ~L~~~~s~~Igvi~~~~~~~-~~~~~~~~gi~~~a~~~g--~~~~~~~~ 52 (301)
T 3miz_A 7 LIRSSRSNTFGIITDYVSTT-PYSVDIVRGIQDWANANG--KTILIANT 52 (301)
T ss_dssp -----CCCEEEEEESSTTTC-CSCHHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred HHhhCCCCEEEEEeCCCcCc-ccHHHHHHHHHHHHHHCC--CEEEEEeC
Confidence 34556678899998877544 355 67777788888888 66666553
No 71
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=80.18 E-value=15 Score=27.49 Aligned_cols=109 Identities=8% Similarity=0.056 Sum_probs=66.0
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc---------CcEEEEcCC-CCCCChHHH
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG---------AVVGIHSMI-DEHFGISVV 373 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~---------ad~~v~ps~-~e~~~~~~~ 373 (464)
+.+++++.+.+ ...+.+++..++.|....+...... ++..+.+.. .|++++-.. .+.-|..++
T Consensus 2 ~~~ilivdd~~-----~~~~~l~~~L~~~~~~~~v~~~~~~--~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 74 (140)
T 1k68_A 2 HKKIFLVEDNK-----ADIRLIQEALANSTVPHEVVTVRDG--MEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVL 74 (140)
T ss_dssp CCEEEEECCCH-----HHHHHHHHHHHTCSSCCEEEEECSH--HHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHH
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHHhcCCCceEEEECCH--HHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHH
Confidence 45677777543 4557777777776643245544443 777777764 688776543 344456666
Q ss_pred HHHH-----hCCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 374 EYMA-----AGAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 374 Ea~a-----~G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
+.+. .++|+|.-........ .... |..+++.. +.+++.++|..++.
T Consensus 75 ~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~---g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 75 AEIKSDPTLKRIPVVVLSTSINEDDIFHSYDL---HVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HHHHHSTTGGGSCEEEEESCCCHHHHHHHHHT---TCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccEEEEecCCcHHHHHHHHHh---chhheecCCCCHHHHHHHHHHHHH
Confidence 6664 3577776432222122 2223 55677664 99999999988875
No 72
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=78.40 E-value=10 Score=29.86 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=39.1
Q ss_pred HHHHhcCcEEEEcCCCCCCChH--HHHHHHhCCcEEEe-C--CCCCccceecccCCccce--e---ecCCHHHHHHHHHH
Q 012436 350 VKLLGGAVVGIHSMIDEHFGIS--VVEYMAAGAIPIAH-N--SAGPKMDIVLEEDGQQTG--F---LAQNAEEYADAIVK 419 (464)
Q Consensus 350 ~~~l~~ad~~v~ps~~e~~~~~--~~Ea~a~G~PvI~~-~--~~~~~~~~v~~~~~~~~g--~---~~~~~~~la~~i~~ 419 (464)
.+.+.+||++|.--.....|.. +-=|.+.|+||++- . .+....-++.. ..+| + .+.+ +++.+.|.+
T Consensus 63 ~~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G---~~~~~~~~~~~Y~~-~el~~il~~ 138 (152)
T 4fyk_A 63 LNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRG---AADGSRFQVWDYAE-GEVETMLDR 138 (152)
T ss_dssp HHHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHH---HCCSSSEEEEECCT-TCHHHHHHH
T ss_pred HHHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcC---CCCCCeEEEEEecH-HHHHHHHHH
Confidence 4568899998875442233322 34478899999993 3 12121223323 1221 2 2235 888888888
Q ss_pred HHc
Q 012436 420 IIS 422 (464)
Q Consensus 420 l~~ 422 (464)
+++
T Consensus 139 f~~ 141 (152)
T 4fyk_A 139 YFE 141 (152)
T ss_dssp HHC
T ss_pred HHH
Confidence 876
No 73
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=77.30 E-value=20 Score=27.50 Aligned_cols=109 Identities=9% Similarity=0.129 Sum_probs=67.6
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh-----------cCcEEEEcC-CCCCCChH
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG-----------GAVVGIHSM-IDEHFGIS 371 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~-----------~ad~~v~ps-~~e~~~~~ 371 (464)
..+++++.+.+ ...+.+++..++.|....|...... ++..+.+. ..|++++-. ..+.-|..
T Consensus 4 ~~~ILivddd~-----~~~~~l~~~L~~~g~~~~v~~~~~~--~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~ 76 (152)
T 3heb_A 4 SVTIVMIEDDL-----GHARLIEKNIRRAGVNNEIIAFTDG--TSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGID 76 (152)
T ss_dssp -CEEEEECCCH-----HHHHHHHHHHHHTTCCCCEEEESSH--HHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHH
T ss_pred CceEEEEeCCH-----HHHHHHHHHHHhCCCcceEEEeCCH--HHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHH
Confidence 46788887643 5567788888887754355554443 77777773 367777643 34555667
Q ss_pred HHHHHHh-----CCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 372 VVEYMAA-----GAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 372 ~~Ea~a~-----G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
+++.+.. ++|+|+......... .... |..+++.. +++++.++|.++..
T Consensus 77 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~---g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 77 ILKLVKENPHTRRSPVVILTTTDDQREIQRCYDL---GANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp HHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHT---TCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCEEEEecCCCHHHHHHHHHC---CCcEEEeCCCCHHHHHHHHHHHHH
Confidence 7777654 567776432222111 2233 56677764 99999999988753
No 74
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=76.10 E-value=15 Score=30.96 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=51.7
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc-CCCCchhHHHHHHhhcCcccCCCceeeeeeccc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD-HDAFPDSLLARAVDRFGVELLHPPKVVHLYRRK 109 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (464)
+.+++||+++.. |....+..+.+++.+.+..++|..+.++ .+. . . .+.....|+ +++.+..+.
T Consensus 5 ~~~~~ri~vl~S------G~gsnl~all~~~~~~~~~~~I~~Vis~~~~a--~-~-l~~A~~~gI------p~~~~~~~~ 68 (215)
T 3kcq_A 5 MKKELRVGVLIS------GRGSNLEALAKAFSTEESSVVISCVISNNAEA--R-G-LLIAQSYGI------PTFVVKRKP 68 (215)
T ss_dssp --CCEEEEEEES------SCCHHHHHHHHHTCCC-CSEEEEEEEESCTTC--T-H-HHHHHHTTC------CEEECCBTT
T ss_pred CCCCCEEEEEEE------CCcHHHHHHHHHHHcCCCCcEEEEEEeCCcch--H-H-HHHHHHcCC------CEEEeCccc
Confidence 456679998754 4556677788888665434565554433 221 1 1 223334455 333222111
Q ss_pred ccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEee
Q 012436 110 WIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTH 169 (464)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h 169 (464)
+ . -....+.+++.+||+++.. ++...++ +....... ++-+|
T Consensus 69 ~----------------~-~~~~~~~L~~~~~Dlivla-gy~~IL~~~~l~~~~~~-~iNiH 111 (215)
T 3kcq_A 69 L----------------D-IEHISTVLREHDVDLVCLA-GFMSILPEKFVTDWHHK-IINIH 111 (215)
T ss_dssp B----------------C-HHHHHHHHHHTTCSEEEES-SCCSCCCHHHHHHTTTS-EEEEE
T ss_pred C----------------C-hHHHHHHHHHhCCCEEEEe-CCceEeCHHHHhhccCC-eEEEC
Confidence 1 0 1344566889999998833 3343443 33333322 44567
No 75
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=74.16 E-value=2.5 Score=35.08 Aligned_cols=71 Identities=21% Similarity=0.087 Sum_probs=42.6
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChH--HHHHHHhCCcEEEeCCCCCccceecccCC-c------c--ceeecCCHHHHHHH
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGIS--VVEYMAAGAIPIAHNSAGPKMDIVLEEDG-Q------Q--TGFLAQNAEEYADA 416 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~--~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~-~------~--~g~~~~~~~~la~~ 416 (464)
.-.-+...||.+|... .++|.- +.|++..|+||++-+..+.+.+.+..... + . .-.+++|++++.+.
T Consensus 111 Rk~~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~ 188 (195)
T 1rcu_A 111 RSFVLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQI 188 (195)
T ss_dssp HHHHHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHH
T ss_pred HHHHHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHH
Confidence 3444556789776542 334433 68999999999999766554433321000 1 1 12344699999888
Q ss_pred HHHH
Q 012436 417 IVKI 420 (464)
Q Consensus 417 i~~l 420 (464)
|.++
T Consensus 189 l~~~ 192 (195)
T 1rcu_A 189 IEQI 192 (195)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 7654
No 76
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=73.71 E-value=18 Score=32.52 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=21.7
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEE
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~ 73 (464)
+++|||+|. |...+.....++|.+.| ++|+.+
T Consensus 5 ~~~mrivf~--------Gt~~fa~~~L~~L~~~~--~~v~~V 36 (318)
T 3q0i_A 5 SQSLRIVFA--------GTPDFAARHLAALLSSE--HEIIAV 36 (318)
T ss_dssp --CCEEEEE--------CCSHHHHHHHHHHHTSS--SEEEEE
T ss_pred ccCCEEEEE--------ecCHHHHHHHHHHHHCC--CcEEEE
Confidence 457999997 56666667778888888 454443
No 77
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=73.15 E-value=30 Score=30.23 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=26.2
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
.++.+..+|+++.+..... -...++..+.+++.+.| +++.++..
T Consensus 3 L~~~~~~~Igvv~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~ 46 (291)
T 3egc_A 3 LRSKRSNVVGLIVSDIENV-FFAEVASGVESEARHKG--YSVLLANT 46 (291)
T ss_dssp ----CCCEEEEEESCTTSH-HHHHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred CccCCCcEEEEEECCCcch-HHHHHHHHHHHHHHHCC--CEEEEEeC
Confidence 4566778999998876432 23445556666777777 66666554
No 78
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=72.69 E-value=21 Score=30.42 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=52.8
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEE-EcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIV-YTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKW 110 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (464)
.++|||+|+.. |....+..+.++|.+....+++.. ++... ...........++ +++.+....+
T Consensus 20 ~~~~rI~~l~S------G~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~----~~~~~~~A~~~gI------p~~~~~~~~~ 83 (229)
T 3auf_A 20 GHMIRIGVLIS------GSGTNLQAILDGCREGRIPGRVAVVISDRA----DAYGLERARRAGV------DALHMDPAAY 83 (229)
T ss_dssp TTCEEEEEEES------SCCHHHHHHHHHHHTTSSSEEEEEEEESST----TCHHHHHHHHTTC------EEEECCGGGS
T ss_pred CCCcEEEEEEe------CCcHHHHHHHHHHHhCCCCCeEEEEEcCCC----chHHHHHHHHcCC------CEEEECcccc
Confidence 35579999754 334567788888887633355443 44322 1222333444555 3332222111
Q ss_pred cccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEee
Q 012436 111 IEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTH 169 (464)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h 169 (464)
.. + -..-....+.+++.+||+++.. ++...++ +......+ ++-+|
T Consensus 84 ~~-----r-------~~~~~~~~~~l~~~~~Dliv~a-gy~~IL~~~~l~~~~~~-~iNiH 130 (229)
T 3auf_A 84 PS-----R-------TAFDAALAERLQAYGVDLVCLA-GYMRLVRGPMLTAFPNR-ILNIH 130 (229)
T ss_dssp SS-----H-------HHHHHHHHHHHHHTTCSEEEES-SCCSCCCHHHHHHSTTC-EEEEE
T ss_pred cc-----h-------hhccHHHHHHHHhcCCCEEEEc-ChhHhCCHHHHhhccCC-EEEEc
Confidence 00 0 0001234566888999988843 3344444 33333322 34567
No 79
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=72.14 E-value=18 Score=33.75 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+.-++-+-..-+.+||+|+-.+....|-..+++..++.++...| .+|.+.++..
T Consensus 170 tQaLaDl~TI~E~~G~~~~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG--~~v~~~~P~~ 232 (399)
T 3q98_A 170 TQSMADLAWLREHFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFG--MDVTLAHPEG 232 (399)
T ss_dssp HHHHHHHHHHHHHHSSSGGGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGT--CEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCccccCCCEEEEEEecccccCcchHHHHHHHHHHHHcC--CEEEEECCcc
Confidence 69999998887776443334678999985544433345788899999999999 8888888764
No 80
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=71.65 E-value=36 Score=27.04 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=25.0
Q ss_pred HHHHhcCcEEEEcCC----CCCCChHHHH---HHHhCCcEEEeC
Q 012436 350 VKLLGGAVVGIHSMI----DEHFGISVVE---YMAAGAIPIAHN 386 (464)
Q Consensus 350 ~~~l~~ad~~v~ps~----~e~~~~~~~E---a~a~G~PvI~~~ 386 (464)
.+.+.+||++|.--. .+.-+.+..| |.+.|+|||+-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 578999998866421 1222335555 778999999954
No 81
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=71.14 E-value=12 Score=34.08 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=21.9
Q ss_pred cccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 26 VHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 26 ~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
-++|++.+++||+++-. |+ ..-...+..|.+.+.+++++.++.
T Consensus 10 ~~~~~~~~~irvgiIG~-----G~--~~g~~~~~~l~~~~~~~~lvav~d 52 (340)
T 1zh8_A 10 HHHMKPLRKIRLGIVGC-----GI--AARELHLPALKNLSHLFEITAVTS 52 (340)
T ss_dssp ------CCCEEEEEECC-----SH--HHHHTHHHHHHTTTTTEEEEEEEC
T ss_pred ccccCCCCceeEEEEec-----CH--HHHHHHHHHHHhCCCceEEEEEEc
Confidence 37889999999999832 10 222334566766544577665553
No 82
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=70.61 E-value=27 Score=26.35 Aligned_cols=112 Identities=7% Similarity=-0.022 Sum_probs=65.3
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc-------CcEEEEcC-CCCCCChHHHHH
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG-------AVVGIHSM-IDEHFGISVVEY 375 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~-------ad~~v~ps-~~e~~~~~~~Ea 375 (464)
..+++|+.+.+ ...+.++...++.+....+.... +.++..+.+.. .|++++-. ..+.-|..+++.
T Consensus 9 ~~~iLivdd~~-----~~~~~l~~~l~~~~~~~~v~~~~--~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~ 81 (146)
T 3ilh_A 9 IDSVLLIDDDD-----IVNFLNTTIIRMTHRVEEIQSVT--SGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDL 81 (146)
T ss_dssp EEEEEEECSCH-----HHHHHHHHHHHTTCCEEEEEEES--SHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHH
T ss_pred cceEEEEeCCH-----HHHHHHHHHHHhcCCCeeeeecC--CHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 45777777542 44566777776655321333333 34677777755 68877654 345556667666
Q ss_pred HHh-------CCcEEEeCCCCCccceecccCCc-cceeecC--CHHHHHHHHHHHHc
Q 012436 376 MAA-------GAIPIAHNSAGPKMDIVLEEDGQ-QTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 376 ~a~-------G~PvI~~~~~~~~~~~v~~~~~~-~~g~~~~--~~~~la~~i~~l~~ 422 (464)
+.. .+|+|.................+ ..+++.. +.+++.++|.+...
T Consensus 82 l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~ 138 (146)
T 3ilh_A 82 FKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLN 138 (146)
T ss_dssp HHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHC
T ss_pred HHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 544 66777654332212221110014 5567765 99999999999887
No 83
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=70.36 E-value=22 Score=32.04 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=21.7
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEE
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~ 73 (464)
.++|||+|. |...+.....++|.+.|| +|+.+
T Consensus 2 ~~mmrIvf~--------Gtp~fa~~~L~~L~~~~~--~v~~V 33 (317)
T 3rfo_A 2 NAMIKVVFM--------GTPDFSVPVLRRLIEDGY--DVIGV 33 (317)
T ss_dssp CTTSEEEEE--------CCSTTHHHHHHHHHHTTC--EEEEE
T ss_pred CCceEEEEE--------eCCHHHHHHHHHHHHCCC--cEEEE
Confidence 456999997 455566666788888884 54443
No 84
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=69.37 E-value=35 Score=26.07 Aligned_cols=109 Identities=9% Similarity=0.045 Sum_probs=63.0
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh---------cCcEEEEcCC-CCCCChHHH
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG---------GAVVGIHSMI-DEHFGISVV 373 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~---------~ad~~v~ps~-~e~~~~~~~ 373 (464)
..+++++.+.+ ...+.++...++.+....|.... +..+..+.+. ..|++++-.. .+.-|..++
T Consensus 8 ~~~ILivdd~~-----~~~~~l~~~L~~~~~~~~v~~~~--~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~ 80 (149)
T 1i3c_A 8 PKVILLVEDSK-----ADSRLVQEVLKTSTIDHELIILR--DGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVL 80 (149)
T ss_dssp CEEEEEECCCH-----HHHHHHHHHHHSCCSCEEEEEEC--SHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHH
T ss_pred CCeEEEEECCH-----HHHHHHHHHHHhcCCCccEEEeC--CHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHH
Confidence 56777877643 44566777666554321233332 3467777776 3688776533 334456677
Q ss_pred HHHHh-----CCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 374 EYMAA-----GAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 374 Ea~a~-----G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
+.+.. .+|+|.......... .... |..+++.. +.+++.++|..+..
T Consensus 81 ~~l~~~~~~~~~piiils~~~~~~~~~~~~~~---ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 81 AEIKQNPDLKRIPVVVLTTSHNEDDVIASYEL---HVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp HHHHHCTTTTTSCEEEEESCCCHHHHHHHHHT---TCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHhCcCcCCCeEEEEECCCChHHHHHHHHc---CCcEEEECCCCHHHHHHHHHHHHH
Confidence 76643 567765432222122 2233 56677775 89999999887753
No 85
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=69.31 E-value=23 Score=32.11 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=18.6
Q ss_pred cccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCC
Q 012436 30 RRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPD 67 (464)
Q Consensus 30 ~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~ 67 (464)
..+.+|||+|+ | ...+...+.++|.+.|++
T Consensus 18 ~~~~~mrIvf~-------G-~~~fa~~~L~~L~~~~~~ 47 (329)
T 2bw0_A 18 LYFQSMKIAVI-------G-QSLFGQEVYCHLRKEGHE 47 (329)
T ss_dssp ---CCCEEEEE-------C-CHHHHHHHHHHHHHTTCE
T ss_pred ccCCCCEEEEE-------c-CcHHHHHHHHHHHHCCCe
Confidence 33455999998 2 344555667888888843
No 86
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=68.70 E-value=27 Score=29.36 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=22.3
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
|||+|+.. |....+..+.+++.+.++++++..+.
T Consensus 2 ~rI~vl~S------G~g~~~~~~l~~l~~~~~~~~i~~Vv 35 (216)
T 2ywr_A 2 LKIGVLVS------GRGSNLQAIIDAIESGKVNASIELVI 35 (216)
T ss_dssp EEEEEEEC------SCCHHHHHHHHHHHTTSSCEEEEEEE
T ss_pred CEEEEEEe------CCcHHHHHHHHHHHhCCCCCeEEEEE
Confidence 68888744 33456778888988877544654433
No 87
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=68.50 E-value=34 Score=25.80 Aligned_cols=109 Identities=9% Similarity=0.062 Sum_probs=65.8
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc------------CcEEEEcCC-CCCCCh
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG------------AVVGIHSMI-DEHFGI 370 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~------------ad~~v~ps~-~e~~~~ 370 (464)
..+++++.+.+ ...+.++...++.|....+...... ++..+.+.. .|++++-.. .+.-|.
T Consensus 6 ~~~iLivdd~~-----~~~~~l~~~L~~~g~~~~v~~~~~~--~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~ 78 (149)
T 1k66_A 6 TQPLLVVEDSD-----EDFSTFQRLLQREGVVNPIYRCITG--DQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGR 78 (149)
T ss_dssp TSCEEEECCCH-----HHHHHHHHHHHHTTBCSCEEEECSH--HHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHH
T ss_pred CccEEEEECCH-----HHHHHHHHHHHHcCCCceEEEECCH--HHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHH
Confidence 56777777543 4556777777776643345544443 677777753 587776543 344456
Q ss_pred HHHHHHH-----hCCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 371 SVVEYMA-----AGAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 371 ~~~Ea~a-----~G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+++.+. ..+|+|+......... .... |..+++.. +.+++.++|..++.
T Consensus 79 ~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~---g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 79 EVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSY---SISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp HHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHT---TCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHC---CCCEEEeCCCCHHHHHHHHHHHHH
Confidence 6777665 4567776432222121 2223 55677764 99999999988875
No 88
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=67.27 E-value=37 Score=25.49 Aligned_cols=107 Identities=15% Similarity=0.081 Sum_probs=64.4
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh----cCcEEEEcC-CCCCCChHHHHHHH-
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG----GAVVGIHSM-IDEHFGISVVEYMA- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~----~ad~~v~ps-~~e~~~~~~~Ea~a- 377 (464)
..+++++.+.+ ...+.++...++.|. .+.... +.++..+.+. ..|++++-. ..+.-|..+++.+.
T Consensus 3 ~~~ilivdd~~-----~~~~~l~~~l~~~g~--~v~~~~--~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 73 (143)
T 3jte_A 3 LAKILVIDDES-----TILQNIKFLLEIDGN--EVLTAS--SSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKK 73 (143)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCH-----HHHHHHHHHHHhCCc--eEEEeC--CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHH
Confidence 45777777543 455677777777653 343333 3366666665 468776643 34445556655543
Q ss_pred --hCCcEEEeCCCCCcc---ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 --AGAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 --~G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|......... +.... |..+++.. +.+++.++|..++.
T Consensus 74 ~~~~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 74 ITPHMAVIILTGHGDLDNAILAMKE---GAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp HCTTCEEEEEECTTCHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEECCCCHHHHHHHHHh---CcceeEeCCCCHHHHHHHHHHHHH
Confidence 367777643322211 22333 56677764 99999999999886
No 89
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=67.21 E-value=28 Score=31.26 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=19.7
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEE
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIV 72 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~ 72 (464)
++|||+|+ |...+.....++|.+.| ++++.
T Consensus 2 ~~mrIvf~--------Gt~~fa~~~L~~L~~~~--~~i~~ 31 (314)
T 1fmt_A 2 ESLRIIFA--------GTPDFAARHLDALLSSG--HNVVG 31 (314)
T ss_dssp CCCEEEEE--------ECSHHHHHHHHHHHHTT--CEEEE
T ss_pred CCCEEEEE--------ecCHHHHHHHHHHHHCC--CcEEE
Confidence 56999997 34445556667777777 45443
No 90
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=67.04 E-value=31 Score=29.27 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEcCCC-CCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCR-NKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~-~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
++.+.++++.+.+. +-++.++..+. ..+...+...+.+..+++|. .+..+-.. ++..+.+.+||.+++|
T Consensus 17 l~~~~~~l~~~~~~------~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~--~~~~v~~~--~d~~~~l~~ad~I~lp 86 (229)
T 1fy2_A 17 LEHALPLIANQLNG------RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGV--NVTGIHRV--ADPLAAIEKAEIIIVG 86 (229)
T ss_dssp TTTTHHHHHHHHTT------CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTC--EEEETTSS--SCHHHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHhcC------CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCC--EEEEEecc--ccHHHHHhcCCEEEEC
Confidence 44445666665542 45778887653 23345667778888888875 34444333 4455778899999998
Q ss_pred CCCC-----------CCChHHHHHHHhCCcEEEeCCC
Q 012436 363 MIDE-----------HFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 363 s~~e-----------~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
- .+ ++--.+-|+...|+|++.+..|
T Consensus 87 G-G~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG 122 (229)
T 1fy2_A 87 G-GNTFQLLKESRERGLLAPMADRVKRGALYIGWSAG 122 (229)
T ss_dssp C-SCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred C-CcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHH
Confidence 4 22 2222356777889999987644
No 91
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=67.01 E-value=28 Score=29.12 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=23.8
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
++.++||+++.. |....+..+.+++.+.+.+++|..+.+
T Consensus 4 ~m~~~ri~vl~S------G~gsnl~all~~~~~~~l~~~I~~Vis 42 (209)
T 4ds3_A 4 SMKRNRVVIFIS------GGGSNMEALIRAAQAPGFPAEIVAVFS 42 (209)
T ss_dssp --CCEEEEEEES------SCCHHHHHHHHHHTSTTCSEEEEEEEE
T ss_pred cCCCccEEEEEE------CCcHHHHHHHHHHHcCCCCcEEEEEEE
Confidence 345678988744 455667778888876544456554443
No 92
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=66.72 E-value=46 Score=27.91 Aligned_cols=107 Identities=10% Similarity=0.135 Sum_probs=52.4
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIE 112 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (464)
++|||+++.. |...-+..+.+++.+. .+++|..+.++.. .....+.....|+ +++.+..+.+..
T Consensus 4 ~~~riavl~S------G~Gsnl~all~~~~~~-~~~eI~~Vis~~~---~a~~~~~A~~~gI------p~~~~~~~~~~~ 67 (215)
T 3tqr_A 4 EPLPIVVLIS------GNGTNLQAIIGAIQKG-LAIEIRAVISNRA---DAYGLKRAQQADI------PTHIIPHEEFPS 67 (215)
T ss_dssp CCEEEEEEES------SCCHHHHHHHHHHHTT-CSEEEEEEEESCT---TCHHHHHHHHTTC------CEEECCGGGSSS
T ss_pred CCcEEEEEEe------CCcHHHHHHHHHHHcC-CCCEEEEEEeCCc---chHHHHHHHHcCC------CEEEeCccccCc
Confidence 4689998754 4455666777777664 3466555443321 1121233444555 333322211100
Q ss_pred cccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEee
Q 012436 113 ESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTH 169 (464)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h 169 (464)
+ ...-....+.+++.+||+++. .++...++ +....... ++-+|
T Consensus 68 -----r-------~~~d~~~~~~l~~~~~Dliv~-agy~~il~~~~l~~~~~~-~iNiH 112 (215)
T 3tqr_A 68 -----R-------TDFESTLQKTIDHYDPKLIVL-AGFMRKLGKAFVSHYSGR-MINIH 112 (215)
T ss_dssp -----H-------HHHHHHHHHHHHTTCCSEEEE-SSCCSCCCHHHHHHTTTS-EEEEE
T ss_pred -----h-------hHhHHHHHHHHHhcCCCEEEE-ccchhhCCHHHHhhccCC-eEEeC
Confidence 0 001123456788999999884 33333443 33333322 45567
No 93
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=66.23 E-value=62 Score=27.62 Aligned_cols=39 Identities=10% Similarity=0.213 Sum_probs=24.5
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
..+|+++.+..... -...+...+.+++.+.| +++.++..
T Consensus 2 s~~Igvi~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~ 40 (272)
T 3o74_A 2 TRTLGFILPDLENP-SYARIAKQLEQGARARG--YQLLIASS 40 (272)
T ss_dssp CCEEEEEESCTTCH-HHHHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred ceEEEEEeCCCcCh-hHHHHHHHHHHHHHHCC--CEEEEEeC
Confidence 45788888876433 24445556666777777 66666553
No 94
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=65.67 E-value=11 Score=34.45 Aligned_cols=94 Identities=9% Similarity=0.016 Sum_probs=56.8
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
...+++.+|-= .-+-...+.+++.. |+++++-+.+.. .+..++.+++++++ ++ ..
T Consensus 22 ~mirigiIG~G--~ig~~~~~~~~~~~--------~~~~lvav~d~~-------~~~a~~~a~~~g~~-~~-------y~ 76 (350)
T 4had_A 22 SMLRFGIISTA--KIGRDNVVPAIQDA--------ENCVVTAIASRD-------LTRAREMADRFSVP-HA-------FG 76 (350)
T ss_dssp CCEEEEEESCC--HHHHHTHHHHHHHC--------SSEEEEEEECSS-------HHHHHHHHHHHTCS-EE-------ES
T ss_pred CccEEEEEcCh--HHHHHHHHHHHHhC--------CCeEEEEEECCC-------HHHHHHHHHHcCCC-ee-------eC
Confidence 34678888741 11112234444433 688888776653 15677778888764 11 14
Q ss_pred HHHHHHhc--CcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 348 DLVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 348 ~~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
++.++++. .|+++..+....-.-.+.+|+..|++|++=.
T Consensus 77 d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EK 117 (350)
T 4had_A 77 SYEEMLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEK 117 (350)
T ss_dssp SHHHHHHCSSCSEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CHHHHhcCCCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeC
Confidence 55666755 6877766544333344789999999999854
No 95
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=64.60 E-value=33 Score=30.77 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=20.8
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEE
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~ 73 (464)
+|||+|. |...+.....++|.+.|| +|+.+
T Consensus 2 ~mrivf~--------Gtp~fa~~~L~~L~~~~~--~v~~V 31 (314)
T 3tqq_A 2 SLKIVFA--------GTPQFAVPTLRALIDSSH--RVLAV 31 (314)
T ss_dssp CCEEEEE--------ECSGGGHHHHHHHHHSSS--EEEEE
T ss_pred CcEEEEE--------CCCHHHHHHHHHHHHCCC--eEEEE
Confidence 5899997 555566677788888884 44443
No 96
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=64.06 E-value=14 Score=27.80 Aligned_cols=29 Identities=10% Similarity=0.026 Sum_probs=19.5
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCC
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPD 67 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~ 67 (464)
.++|||+++....... ..+...|.+.|++
T Consensus 6 ~r~~rILiVdD~~~~~-------~~l~~~L~~~G~~ 34 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIA-------MLIEDTLCELGHE 34 (123)
T ss_dssp CCCCCEEEESSSTTTS-------HHHHHHHHHHCCC
T ss_pred CCCCEEEEEeCCHHHH-------HHHHHHHHHCCCE
Confidence 3569999998876332 3445667788844
No 97
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=63.44 E-value=42 Score=24.72 Aligned_cols=108 Identities=13% Similarity=0.144 Sum_probs=64.4
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh---cCcEEEEcC-CCCCCChHHHHHHHh-
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG---GAVVGIHSM-IDEHFGISVVEYMAA- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~---~ad~~v~ps-~~e~~~~~~~Ea~a~- 378 (464)
..++.++.+.+ ...+.+++..++.|.. .+..... ..+..+.+. ..|++++-. ..+.-|..+++.+..
T Consensus 5 ~~~iLivdd~~-----~~~~~l~~~L~~~g~~-~v~~~~~--~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~ 76 (129)
T 3h1g_A 5 SMKLLVVDDSS-----TMRRIIKNTLSRLGYE-DVLEAEH--GVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSD 76 (129)
T ss_dssp -CCEEEECSCH-----HHHHHHHHHHHHTTCC-CEEEESS--HHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTS
T ss_pred CcEEEEEeCCH-----HHHHHHHHHHHHcCCc-EEEEeCC--HHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 46777877543 4567777777777643 2433332 245544443 367777643 344556777777653
Q ss_pred ----CCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ----GAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ----G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|.......... .... |..+++.. +++++.++|..++.
T Consensus 77 ~~~~~~pii~~s~~~~~~~~~~~~~~---g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 77 SRFKEIPIIMITAEGGKAEVITALKA---GVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp TTCTTCCEEEEESCCSHHHHHHHHHH---TCCEEEESCCCHHHHHHHHHHHHC
T ss_pred CCCCCCeEEEEeCCCChHHHHHHHHc---CccEEEeCCCCHHHHHHHHHHHhc
Confidence 567776433222122 2233 56677774 99999999998876
No 98
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=63.43 E-value=35 Score=31.97 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+-.++-+...-+.+||+|+-.+....|-+.+++..++.++...| .+|.+.++..
T Consensus 167 tQaLaDl~TI~E~~G~l~~l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG--~~v~l~~P~~ 229 (418)
T 2yfk_A 167 TQAMADALHLIHEFGGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLG--MDVVLAHPEG 229 (418)
T ss_dssp HHHHHHHHHHHHHTTSSGGGTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGT--CEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcC--CEEEEECCcc
Confidence 68999999887776322123578999985433222344789999999999999 8888888764
No 99
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=63.20 E-value=25 Score=29.56 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=45.0
Q ss_pred cccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccc
Q 012436 30 RRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRK 109 (464)
Q Consensus 30 ~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (464)
....+|||+++.+ |....+..+.+++.+ ..+++|..+.++.+ ..........|+ +++....+.
T Consensus 8 ~~~~~~ri~vl~S------G~gsnl~all~~~~~-~~~~eI~~Vis~~~----a~~~~~A~~~gI------p~~~~~~~~ 70 (215)
T 3da8_A 8 PPSAPARLVVLAS------GTGSLLRSLLDAAVG-DYPARVVAVGVDRE----CRAAEIAAEASV------PVFTVRLAD 70 (215)
T ss_dssp CCCSSEEEEEEES------SCCHHHHHHHHHSST-TCSEEEEEEEESSC----CHHHHHHHHTTC------CEEECCGGG
T ss_pred CCCCCcEEEEEEe------CChHHHHHHHHHHhc-cCCCeEEEEEeCCc----hHHHHHHHHcCC------CEEEeCccc
Confidence 3456789998754 344566677777754 33456655544432 122233445555 333222111
Q ss_pred ccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEe
Q 012436 110 WIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFD 146 (464)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~ 146 (464)
+.. + ...-....+.+++.+||+++.
T Consensus 71 ~~~-----r-------~~~d~~~~~~l~~~~~Dlivl 95 (215)
T 3da8_A 71 HPS-----R-------DAWDVAITAATAAHEPDLVVS 95 (215)
T ss_dssp SSS-----H-------HHHHHHHHHHHHTTCCSEEEE
T ss_pred ccc-----h-------hhhhHHHHHHHHhhCCCEEEE
Confidence 100 0 000123456688999998883
No 100
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=62.56 E-value=42 Score=24.46 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=46.0
Q ss_pred CcEEEEEc-CCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHH--HhCC
Q 012436 304 RPRLQFVG-SCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYM--AAGA 380 (464)
Q Consensus 304 ~~~l~i~G-~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~--a~G~ 380 (464)
..++++++ .|-.. . -..+.+++.+++.|+.-.|.-.+. .++.+.+..+|+++.+..... -..=++.. -.++
T Consensus 4 ~mkIlvvC~~G~~T-S-ll~~kl~~~~~~~gi~~~i~~~~~---~~~~~~~~~~D~Ii~t~~l~~-~~~~~~~~~~~~~~ 77 (109)
T 2l2q_A 4 SMNILLVCGAGMST-S-MLVQRIEKYAKSKNINATIEAIAE---TRLSEVVDRFDVVLLAPQSRF-NKKRLEEITKPKGI 77 (109)
T ss_dssp CEEEEEESSSSCSS-C-HHHHHHHHHHHHHTCSEEEEEECS---TTHHHHTTTCSEEEECSCCSS-HHHHHHHHHHHHTC
T ss_pred ceEEEEECCChHhH-H-HHHHHHHHHHHHCCCCeEEEEecH---HHHHhhcCCCCEEEECCccHH-HHHHHHHHhcccCC
Confidence 35555554 44433 2 455789999999887544444443 566667889998887643221 12223333 2589
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
||+.-+
T Consensus 78 pv~~I~ 83 (109)
T 2l2q_A 78 PIEIIN 83 (109)
T ss_dssp CEEECC
T ss_pred CEEEEC
Confidence 998754
No 101
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=61.95 E-value=4.2 Score=34.16 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=27.6
Q ss_pred cccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceE
Q 012436 30 RRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCI 71 (464)
Q Consensus 30 ~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~ 71 (464)
+.+++|||+++..+. .|-.++.+..+++.+.+.|.+++++
T Consensus 2 ~~~~mmkilii~~S~--~g~T~~la~~i~~~l~~~g~~v~~~ 41 (211)
T 1ydg_A 2 SLTAPVKLAIVFYSS--TGTGYAMAQEAAEAGRAAGAEVRLL 41 (211)
T ss_dssp ---CCCEEEEEECCS--SSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcCCCCeEEEEEECC--CChHHHHHHHHHHHHhcCCCEEEEE
Confidence 345678999986655 4567888888999999888444433
No 102
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=61.95 E-value=47 Score=24.78 Aligned_cols=107 Identities=7% Similarity=0.067 Sum_probs=65.9
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a~-- 378 (464)
..+++++.+.+ ...+.++...++.|. .|.... +.++..+.+.. .|++++-. ..+.-|..+++.+..
T Consensus 6 ~~~iLivdd~~-----~~~~~l~~~l~~~g~--~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 76 (140)
T 3grc_A 6 RPRILICEDDP-----DIARLLNLMLEKGGF--DSDMVH--SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDS 76 (140)
T ss_dssp CSEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEEC--SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSG
T ss_pred CCCEEEEcCCH-----HHHHHHHHHHHHCCC--eEEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCc
Confidence 56778877543 455677777776654 244433 33666666654 57777654 344556667776654
Q ss_pred ---CCcEEEeCCCCCcc----ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAHNSAGPKM----DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~~~~~~~~----~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|.-....... +.... |..+++.. +.+++.++|..++.
T Consensus 77 ~~~~~~ii~~s~~~~~~~~~~~~~~~---g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 77 RTRDLAIVVVSANAREGELEFNSQPL---AVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp GGTTCEEEEECTTHHHHHHHHCCTTT---CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEecCCChHHHHHHhhhc---CCCEEEeCCCCHHHHHHHHHHHHH
Confidence 67888754332211 22223 55667764 99999999998886
No 103
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=61.08 E-value=11 Score=33.61 Aligned_cols=68 Identities=6% Similarity=-0.138 Sum_probs=43.8
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcE
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIP 382 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pv 382 (464)
|+++++-+.+.. .+..++.+++++.+. + .++.++++..|+++..+......-.+.+++..|++|
T Consensus 30 ~~~~l~av~d~~-------~~~~~~~a~~~~~~~------~---~~~~~ll~~~D~V~i~tp~~~h~~~~~~al~~gk~v 93 (308)
T 3uuw_A 30 ERFEFVGAFTPN-------KVKREKICSDYRIMP------F---DSIESLAKKCDCIFLHSSTETHYEIIKILLNLGVHV 93 (308)
T ss_dssp SSSEEEEEECSC-------HHHHHHHHHHHTCCB------C---SCHHHHHTTCSEEEECCCGGGHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEECCC-------HHHHHHHHHHcCCCC------c---CCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHCCCcE
Confidence 578888555543 145666677776531 2 445555668998887654443344467899999999
Q ss_pred EEeC
Q 012436 383 IAHN 386 (464)
Q Consensus 383 I~~~ 386 (464)
++-.
T Consensus 94 l~EK 97 (308)
T 3uuw_A 94 YVDK 97 (308)
T ss_dssp EECS
T ss_pred EEcC
Confidence 9854
No 104
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=60.24 E-value=43 Score=30.48 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=23.3
Q ss_pred ccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 27 HNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 27 ~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
.+|...+++||+++-. .......+..|.+...+++++.+.
T Consensus 6 ~~m~~~~~~rvgiiG~--------G~~g~~~~~~l~~~~~~~~lvav~ 45 (354)
T 3q2i_A 6 IPPITDRKIRFALVGC--------GRIANNHFGALEKHADRAELIDVC 45 (354)
T ss_dssp CCCCCSSCEEEEEECC--------STTHHHHHHHHHHTTTTEEEEEEE
T ss_pred eecCCCCcceEEEEcC--------cHHHHHHHHHHHhCCCCeEEEEEE
Confidence 3455667899999833 222234457777763346766444
No 105
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=60.14 E-value=62 Score=28.87 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSL 84 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~ 84 (464)
+|.+++++-+..++ ++-+.+||+|+-+ |..+++..++.++...| .+|.+.++..-..+..+
T Consensus 130 tQaLaDl~Ti~e~~---g~l~gl~va~vGD------~~~rva~Sl~~~~~~~g--~~v~~~~P~~~~~~~~~ 190 (307)
T 2i6u_A 130 CQVLADLQTIAERK---GALRGLRLSYFGD------GANNMAHSLLLGGVTAG--IHVTVAAPEGFLPDPSV 190 (307)
T ss_dssp HHHHHHHHHHHHHH---SCCTTCEEEEESC------TTSHHHHHHHHHHHHTT--CEEEEECCTTSCCCHHH
T ss_pred cHHHHHHHHHHHHh---CCcCCeEEEEECC------CCcCcHHHHHHHHHHCC--CEEEEECCccccCCHHH
Confidence 68999998887765 3446789999744 23589999999999999 88888887653333334
No 106
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=60.14 E-value=45 Score=25.36 Aligned_cols=109 Identities=8% Similarity=0.062 Sum_probs=59.9
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a~-- 378 (464)
..+++++.+.+ ...+.++...++.+....+.... +.++..+.+.. .|++++-. ..+.-|..+++.+..
T Consensus 20 m~~iLivdd~~-----~~~~~l~~~L~~~~~~~~v~~~~--~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 92 (150)
T 4e7p_A 20 HMKVLVAEDQS-----MLRDAMCQLLTLQPDVESVLQAK--NGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEK 92 (150)
T ss_dssp CEEEEEECSCH-----HHHHHHHHHHHTSTTEEEEEEES--SHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred ccEEEEEcCCH-----HHHHHHHHHHHhCCCcEEEEEEC--CHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhC
Confidence 45666666532 34455555555443111222222 33666666654 46766643 344455666665543
Q ss_pred -CCcEEEeCCCCC---ccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 -GAIPIAHNSAGP---KMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 -G~PvI~~~~~~~---~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|+...... ..+.... |..+++.. +.+++.++|..++.
T Consensus 93 ~~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 93 LETKVVVVTTFKRAGYFERAVKA---GVDAYVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHT---TCSEEEETTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCCCHHHHHHHHHC---CCcEEEecCCCHHHHHHHHHHHHc
Confidence 567766432222 1122333 56677764 99999999999886
No 107
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=60.03 E-value=23 Score=26.88 Aligned_cols=107 Identities=12% Similarity=0.069 Sum_probs=63.2
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a~-- 378 (464)
..+++++.+.+. ..+.+.....+.|. .|.... +.++..+.+.. .|++++-. ..+.-|..+++.+..
T Consensus 8 ~~~iLivd~~~~-----~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 78 (147)
T 2zay_A 8 WWRIMLVDTQLP-----ALAASISALSQEGF--DIIQCG--NAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNP 78 (147)
T ss_dssp CEEEEEECTTGG-----GGHHHHHHHHHHTE--EEEEES--SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTST
T ss_pred CceEEEEeCCHH-----HHHHHHHHHHHcCC--eEEEeC--CHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCc
Confidence 567888876542 23556666665543 344333 33666666654 68777643 334456667777654
Q ss_pred ---CCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
++|+|+......... .... |..+++.. +.+++.++|..++.
T Consensus 79 ~~~~~pii~ls~~~~~~~~~~~~~~---g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 79 QTASIPVIALSGRATAKEEAQLLDM---GFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp TTTTSCEEEEESSCCHHHHHHHHHH---TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHhC---CCCEEEeCCCCHHHHHHHHHHHHH
Confidence 677776432222121 1233 55677764 99999999998876
No 108
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=59.98 E-value=29 Score=31.35 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=26.2
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
..|||++. ||....=..+++.|.+.|++++|+.....
T Consensus 23 ~~~~vlVt-------GatG~iG~~l~~~L~~~g~~~~v~~~~~~ 59 (346)
T 4egb_A 23 NAMNILVT-------GGAGFIGSNFVHYMLQSYETYKIINFDAL 59 (346)
T ss_dssp -CEEEEEE-------TTTSHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred CCCeEEEE-------CCccHHHHHHHHHHHhhCCCcEEEEEecc
Confidence 44677775 45555566779999999987787776654
No 109
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=59.74 E-value=47 Score=24.96 Aligned_cols=109 Identities=11% Similarity=0.093 Sum_probs=66.4
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a~-- 378 (464)
..+++++.+.+ ...+.++...++.|....+..... .++..+.+.. .|++++-. ..+.-|..+++.+..
T Consensus 5 ~~~ILivdd~~-----~~~~~l~~~L~~~~~~~~v~~~~~--~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (144)
T 3kht_A 5 SKRVLVVEDNP-----DDIALIRRVLDRKDIHCQLEFVDN--GAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPG 77 (144)
T ss_dssp CEEEEEECCCH-----HHHHHHHHHHHHTTCCEEEEEESS--HHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSS
T ss_pred CCEEEEEeCCH-----HHHHHHHHHHHhcCCCeeEEEECC--HHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 56788887643 455677777777664323444443 3777777765 57776643 234456667777654
Q ss_pred ---CCcEEEeCCCCCccc---eecccCCccceeecC---CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ---NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~---~~~~la~~i~~l~~ 422 (464)
++|+|+......... .... |..+++.. +.+++.++|..+++
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~~~~---ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 78 ANQHTPIVILTDNVSDDRAKQCMAA---GASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp TTTTCCEEEEETTCCHHHHHHHHHT---TCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHc---CCCEEEECCCCcHHHHHHHHHHHHH
Confidence 678876543322122 2233 56667663 78999999988875
No 110
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=59.58 E-value=7.8 Score=30.14 Aligned_cols=41 Identities=10% Similarity=0.126 Sum_probs=30.1
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCC-ceEE
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDL-DCIV 72 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~-~v~~ 72 (464)
...||++|+....+.+.-..+....++.++.+.|+++ .|..
T Consensus 10 ~~~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf 51 (140)
T 2d1p_A 10 HGSMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFF 51 (140)
T ss_dssp -CCCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEE
Confidence 3568999998877776555667789999999999666 4333
No 111
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=59.42 E-value=5.8 Score=34.92 Aligned_cols=43 Identities=9% Similarity=-0.031 Sum_probs=31.2
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCC
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAG 389 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~ 389 (464)
+++.+++..+|++|..+..+..--.+..++..|+|+|+...|-
T Consensus 65 ~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~ 107 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGF 107 (272)
T ss_dssp CCHHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 5677778899999876654433333567899999999976653
No 112
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=59.11 E-value=48 Score=28.55 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=26.5
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
+|||++.....- ...-+..|+++|.+.| +|++..+..+
T Consensus 1 ~M~ILlTNDDGi----~apGi~aL~~~l~~~g---~V~VVAP~~~ 38 (251)
T 2phj_A 1 MPTFLLVNDDGY----FSPGINALREALKSLG---RVVVVAPDRN 38 (251)
T ss_dssp -CEEEEECSSCT----TCHHHHHHHHHHTTTS---EEEEEEESSC
T ss_pred CCEEEEECCCCC----CCHHHHHHHHHHHhcC---CEEEEecCCC
Confidence 389999776532 3445778889999887 6777776653
No 113
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=58.88 E-value=2.9 Score=34.61 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=21.8
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEE
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~ 73 (464)
|+++.+|||+++..+...+|-.+..+..+++.+. .| +++.++
T Consensus 1 m~m~~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g--~~v~~~ 42 (193)
T 1rtt_A 1 MSLSDDIKVLGISGSLRSGSYNSAALQEAIGLVP-PG--MSIELA 42 (193)
T ss_dssp ------CEEEEEESCCSTTCHHHHHHHHHHTTCC-TT--CEEEEC
T ss_pred CCCCCCceEEEEECCCCCCChHHHHHHHHHHhcc-CC--CeEEEE
Confidence 4555679999998776655344445555555555 45 444443
No 114
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=58.73 E-value=99 Score=28.45 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
++..+++.+....... .+-++.++........+...+.+.+.+.+.|..-.+.-....+.+++.+.+..+|.+++.
T Consensus 235 ~~~~~~~~~~~~~~~~----~~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g 310 (402)
T 1e5d_A 235 QCTFAVQKYVEYAEQK----PTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVG 310 (402)
T ss_dssp HHHHHHHHHHHHHHCC----CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHHhcCC----CCCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEE
Confidence 4666677666655432 134666666555444444455565555544432223334444556777778999987765
Q ss_pred C--CCCCCChHH---HHHHH----hCCcEEEe
Q 012436 363 M--IDEHFGISV---VEYMA----AGAIPIAH 385 (464)
Q Consensus 363 s--~~e~~~~~~---~Ea~a----~G~PvI~~ 385 (464)
+ +.++.+-.+ ++.+. .|++++..
T Consensus 311 sp~~~~~~~~~~~~~l~~l~~~~l~~k~~~~f 342 (402)
T 1e5d_A 311 SPTHNNGILPYVAGTLQYIKGLRPQNKIGGAF 342 (402)
T ss_dssp CCCBTTBCCHHHHHHHHHHHHTCCCSCEEEEE
T ss_pred CCccCCCchHHHHHHHHHhhhcccCCCEEEEE
Confidence 4 555555544 34433 36766643
No 115
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=58.43 E-value=52 Score=25.34 Aligned_cols=64 Identities=9% Similarity=0.159 Sum_probs=35.8
Q ss_pred CcEEEEcCC-CCCCChHHHHHHH---hCCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 356 AVVGIHSMI-DEHFGISVVEYMA---AGAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 356 ad~~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.|++++-.. .+.-|..+++.+. ..+|+|+......... .... |..+++.. +.+++.++|.+++.
T Consensus 84 ~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIK---GAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHc---CCCEEEeCCCCHHHHHHHHHHHhc
Confidence 466665432 3344555555443 3567776432222122 2233 55667664 99999999988764
No 116
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=58.17 E-value=56 Score=24.42 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=66.1
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--------CcEEEEcCC-CCCCChHHHH
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--------AVVGIHSMI-DEHFGISVVE 374 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--------ad~~v~ps~-~e~~~~~~~E 374 (464)
..+++++.+.+ ...+.+++..++.|....|...... ++..+.+.. .|++++-.. .+.-|..+++
T Consensus 7 ~~~ILivdd~~-----~~~~~l~~~L~~~g~~~~v~~~~~~--~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~ 79 (143)
T 2qvg_A 7 KVDILYLEDDE-----VDIQSVERVFHKISSLIKIEIAKSG--NQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLK 79 (143)
T ss_dssp CCSEEEECCCH-----HHHHHHHHHHHHHCTTCCEEEESSH--HHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHH
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHHHhCCCceEEEECCH--HHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHH
Confidence 56778887643 4557777777777653345555444 777777753 687776432 3444566677
Q ss_pred HHH-----hCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 375 YMA-----AGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 375 a~a-----~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+. ..+|+|+............-...|..+++.. +.+++.+++.....
T Consensus 80 ~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 80 ELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp HHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 665 4677776432222122221111155677664 99999998766554
No 117
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=57.60 E-value=8.3 Score=29.45 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=25.8
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDL 68 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~ 68 (464)
||++++....+.+.-..+....++.++.+.||++
T Consensus 1 mk~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v 34 (130)
T 2hy5_A 1 MKFALQINEGPYQHQASDSAYQFAKAALEKGHEI 34 (130)
T ss_dssp CEEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCee
Confidence 6888887766655345566789999999999766
No 118
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=57.51 E-value=58 Score=28.78 Aligned_cols=111 Identities=6% Similarity=-0.094 Sum_probs=65.8
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC-----CC
Q 012436 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN-----LL 345 (464)
Q Consensus 271 ~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-----~~ 345 (464)
.++-+|.-....+-..+++.+-.+... ++-++.++...... ...+.+.+++..+++|.. .|..+.- .+
T Consensus 28 ~l~iiGGgedk~~~~~i~~~~v~lagg-----~~~~I~~IptAs~~-~~~~~~~~~~~f~~lG~~-~v~~L~i~~r~~a~ 100 (291)
T 3en0_A 28 AILIIGGAEDKVHGREILQTFWSRSGG-----NDAIIGIIPSASRE-PLLIGERYQTIFSDMGVK-ELKVLDIRDRAQGD 100 (291)
T ss_dssp CEEEECSSCCSSSCCHHHHHHHHHTTG-----GGCEEEEECTTCSS-HHHHHHHHHHHHHHHCCS-EEEECCCCSGGGGG
T ss_pred eEEEEECCCCccChHHHHHHHHHHcCC-----CCCeEEEEeCCCCC-hHHHHHHHHHHHHHcCCC-eeEEEEecCccccC
Confidence 344555433332333445555443322 25678888764432 446777888888888863 4555432 34
Q ss_pred hhHHHHHHhcCcEEEEcCC--------CCCCC--hHHHHHHHhC-CcEEEeCCC
Q 012436 346 YRDLVKLLGGAVVGIHSMI--------DEHFG--ISVVEYMAAG-AIPIAHNSA 388 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps~--------~e~~~--~~~~Ea~a~G-~PvI~~~~~ 388 (464)
.+++.+.+..||+++++-- ....+ -.+-|+...| +|++.+..|
T Consensus 101 ~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAG 154 (291)
T 3en0_A 101 DSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAG 154 (291)
T ss_dssp CHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHH
T ss_pred CHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHH
Confidence 5678889999999887721 11122 2356777889 888876544
No 119
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=57.51 E-value=52 Score=29.57 Aligned_cols=92 Identities=9% Similarity=0.014 Sum_probs=54.1
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
...++.+|-= .-| ...++++.+. ++++++-+.+... +..++.+++++.+. ...+
T Consensus 5 ~~~igiiG~G--~~g-~~~~~~l~~~--------~~~~l~av~d~~~-------~~~~~~~~~~~~~~--------~~~~ 58 (330)
T 3e9m_A 5 KIRYGIMSTA--QIV-PRFVAGLRES--------AQAEVRGIASRRL-------ENAQKMAKELAIPV--------AYGS 58 (330)
T ss_dssp CEEEEECSCC--TTH-HHHHHHHHHS--------SSEEEEEEBCSSS-------HHHHHHHHHTTCCC--------CBSS
T ss_pred eEEEEEECch--HHH-HHHHHHHHhC--------CCcEEEEEEeCCH-------HHHHHHHHHcCCCc--------eeCC
Confidence 3567777641 111 2344444432 4777775555431 45666677666431 1256
Q ss_pred HHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 349 LVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 349 ~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
+.++++ .+|+++..+....-.-.+.+++..|++|++-.
T Consensus 59 ~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EK 98 (330)
T 3e9m_A 59 YEELCKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEK 98 (330)
T ss_dssp HHHHHHCTTCSEEEECCCGGGHHHHHHHHHHTTCCEEECS
T ss_pred HHHHhcCCCCCEEEEcCCCHHHHHHHHHHHHCCCeEEEeC
Confidence 667777 68988776544433334678999999999854
No 120
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=57.46 E-value=6.9 Score=31.20 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=26.1
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
|||+++..+ ..|.++.++..+++.|.+.| +++.++.
T Consensus 1 Mkv~IvY~S--~tGnT~~~A~~ia~~l~~~g--~~v~~~~ 36 (161)
T 3hly_A 1 MSVLIGYLS--DYGYSDRLSQAIGRGLVKTG--VAVEMVD 36 (161)
T ss_dssp -CEEEEECT--TSTTHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CEEEEEEEC--CChHHHHHHHHHHHHHHhCC--CeEEEEE
Confidence 677777443 34789999999999999998 4554443
No 121
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=57.17 E-value=62 Score=24.63 Aligned_cols=108 Identities=10% Similarity=0.012 Sum_probs=61.3
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhc-CCCCcEEEccCCChhHHHHHHhc---CcEEEEcCC-CCCCChHHHHHHH-
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIEL-KVDGNVEFYKNLLYRDLVKLLGG---AVVGIHSMI-DEHFGISVVEYMA- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~~~~~~~l~~---ad~~v~ps~-~e~~~~~~~Ea~a- 377 (464)
..+++++.+.+ ...+.++...++. |. ..+.... +.++..+.+.. .|++++-.. .+.-|..+++.+.
T Consensus 3 ~~~iLivdd~~-----~~~~~l~~~L~~~~g~-~~v~~~~--~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 74 (154)
T 2qsj_A 3 LTVVLIVDDHH-----LIRAGAKNLLEGAFSG-MRVEGAE--TVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKR 74 (154)
T ss_dssp CEEEEEECSCH-----HHHHHHHHHHHHHCTT-EEEEEES--SHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHH
T ss_pred ccEEEEEcCCH-----HHHHHHHHHHHhCCCc-eEEEEec--CHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHH
Confidence 56777877543 4556677777665 32 1233333 33777777765 677776532 3344666666554
Q ss_pred --hCCcEEEeCCCCCcc---ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 --AGAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 --~G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.++|+|......... +.... |..+++.. +.+++.++|..++.
T Consensus 75 ~~~~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~kp~~~~~L~~~l~~~~~ 123 (154)
T 2qsj_A 75 FDPSNAVALISGETDHELIRAALEA---GADGFIPKSADPQVLIHAVSLILE 123 (154)
T ss_dssp HCTTSEEEEC-----CHHHHHHHHT---TCCBBCCTTSCHHHHHHHHHHHHT
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHc---cCCEEEeCCCCHHHHHHHHHHHHc
Confidence 367888743222211 12233 55667664 99999999999886
No 122
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=56.06 E-value=7.3 Score=34.54 Aligned_cols=43 Identities=7% Similarity=-0.169 Sum_probs=30.3
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCCC
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSAG 389 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~ 389 (464)
+++.+++..+|++|--+..+..--.+..++..|+|+|+..+|-
T Consensus 80 ~dl~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~ 122 (288)
T 3ijp_A 80 DDPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGF 122 (288)
T ss_dssp SCHHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4677788899999866544432223567889999999876653
No 123
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=55.86 E-value=44 Score=30.26 Aligned_cols=65 Identities=11% Similarity=0.179 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLA 86 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~ 86 (464)
+|.+++++-+..+++..++-+.+||+|+-. | .+++..++.++...| .+|.+.++..-..+..+.+
T Consensus 154 tQaLaDl~Ti~e~~~~G~~l~glkva~vGD------~-~rva~Sl~~~~~~~G--~~v~~~~P~~~~~~~~~~~ 218 (339)
T 4a8t_A 154 TQELGDLCTMVEHLPEGKKLEDCKVVFVGD------A-TQVCFSLGLITTKMG--MNFVHFGPEGFQLNEEHQA 218 (339)
T ss_dssp HHHHHHHHHHHHTCCTTCCGGGCEEEEESS------C-CHHHHHHHHHHHHTT--CEEEEECCTTSSCCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEEECC------C-chhHHHHHHHHHHcC--CEEEEECCcccCCCHHHHH
Confidence 699999998877764211456789998743 2 788999999999999 8888888765333344433
No 124
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=55.34 E-value=1e+02 Score=26.65 Aligned_cols=68 Identities=7% Similarity=-0.005 Sum_probs=39.2
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHH
Q 012436 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKL 352 (464)
Q Consensus 273 ~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~ 352 (464)
...+......+.. ++..+.+.. |+...+++.+.. - ..+.+.+++.|+ +.|.+.|+=......++
T Consensus 177 ~~~~~~~~~~~~~----~~~~~l~~~----~~~~ai~~~~d~-a------~g~~~al~~~g~-~di~vig~d~~~~~~~~ 240 (304)
T 3gbv_A 177 LNLHADLNIEDSR----MLDDFFREH----PDVKHGITFNSK-V------YIIGEYLQQRRK-SDFSLIGYDLLERNVTC 240 (304)
T ss_dssp EEEESSCSSCHHH----HHHHHHHHC----TTCCEEEESSSC-T------HHHHHHHHHTTC-CSCEEEEESCCHHHHHH
T ss_pred eeecCCCHHHHHH----HHHHHHHhC----CCeEEEEEcCcc-h------HHHHHHHHHcCC-CCcEEEEeCCCHHHHHH
Confidence 3345455555544 444444443 466777777643 2 345566677788 68888887544443566
Q ss_pred HhcC
Q 012436 353 LGGA 356 (464)
Q Consensus 353 l~~a 356 (464)
+...
T Consensus 241 ~~~~ 244 (304)
T 3gbv_A 241 LKEG 244 (304)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 6544
No 125
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=55.05 E-value=69 Score=26.73 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=50.1
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||+++.. |....+..+.+++.+...++++..+.++.. ...........|+ +++.+....+..
T Consensus 4 ~ki~vl~s------G~g~~~~~~l~~l~~~~l~~~I~~Vit~~~---~~~v~~~A~~~gI------p~~~~~~~~~~~-- 66 (212)
T 3av3_A 4 KRLAVFAS------GSGTNFQAIVDAAKRGDLPARVALLVCDRP---GAKVIERAARENV------PAFVFSPKDYPS-- 66 (212)
T ss_dssp EEEEEECC------SSCHHHHHHHHHHHTTCCCEEEEEEEESST---TCHHHHHHHHTTC------CEEECCGGGSSS--
T ss_pred cEEEEEEE------CCcHHHHHHHHHHHhCCCCCeEEEEEeCCC---CcHHHHHHHHcCC------CEEEeCcccccc--
Confidence 68887643 334567778888887632355544333321 1222333444555 332222111100
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEee
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTH 169 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h 169 (464)
+ -..-....+.+++.+||+++.. ++...++ +......+ ++-+|
T Consensus 67 ---~-------~~~~~~~~~~l~~~~~Dliv~a-~y~~il~~~~l~~~~~~-~iNiH 111 (212)
T 3av3_A 67 ---K-------AAFESEILRELKGRQIDWIALA-GYMRLIGPTLLSAYEGK-IVNIH 111 (212)
T ss_dssp ---H-------HHHHHHHHHHHHHTTCCEEEES-SCCSCCCHHHHHHTTTC-EEEEE
T ss_pred ---h-------hhhHHHHHHHHHhcCCCEEEEc-hhhhhCCHHHHhhhcCC-EEEEe
Confidence 0 0001234566888999988843 3444444 33333323 44567
No 126
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=55.04 E-value=6.7 Score=34.66 Aligned_cols=41 Identities=7% Similarity=0.068 Sum_probs=25.1
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEE
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIV 72 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~ 72 (464)
.+.|||++|...+...+=....+...+++|.+.|++|+++-
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46799999865544331123445667788999996655443
No 127
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=54.93 E-value=92 Score=25.95 Aligned_cols=200 Identities=15% Similarity=0.166 Sum_probs=115.5
Q ss_pred HHHHhhcCCEEEEcCHHHHHHHHHHhCCCCCeEEecCCCCCCCCcc--CCC-CCCCCCcEEEEEeccCCCCChHHHHHHH
Q 012436 215 YGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQV--LPL-ERSTEYPAIISVAQFRPEKAHPLQLEAF 291 (464)
Q Consensus 215 ~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~--~~~-~~~~~~~~i~~~G~~~~~K~~~~ll~a~ 291 (464)
+..+.+..=.||.........-+........+...+.+++...... ... ....+..-++|-|.+.....-..+++.+
T Consensus 124 e~~~i~spi~visqg~~l~~ak~~h~~vd~~~ef~~f~~~~~k~~~~~f~~~~~~~k~~d~iyggsfrsg~re~kmve~l 203 (351)
T 1jg7_A 124 EELLIKSPIKVISQGINLDIAKAAHKKVDNVIEFEYFPIEQYKIHMNDFQLSKPTKKTLDVIYGGSFRSGQRESKMVEFL 203 (351)
T ss_dssp HHHCCCSCEEEEESCSSCHHHHHHTTTCSSEEEEEECCGGGHHHHSTTCCCCCCCCCCEEEEEECCCGGGTTHHHHHHHH
T ss_pred hhhhhcCchhhhhcccCHHHHHHhhccccceeEEEEechHHhhhhhhheeecCCccceeeeeeccccccCchHHHHHHHH
Confidence 3455566656666555443332222222456666776665321110 011 1123345789999887665555555543
Q ss_pred HHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcC---CCC-C
Q 012436 292 SVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM---IDE-H 367 (464)
Q Consensus 292 ~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps---~~e-~ 367 (464)
.+ ..+.+-+.|+..+. +++ -.++....-=.|.|.+|-.++.+-=+.|-..+.-. ... -
T Consensus 204 ---fd------tgl~ieffg~~~~~-------qfk--np~~pwt~~pvf~gki~~~~~~~~ns~a~a~~i~gdk~y~~n~ 265 (351)
T 1jg7_A 204 ---FD------TGLNIEFFGNAREK-------QFK--NPKYPWTKAPVFTGKIPMNMVSEKNSQAIAALIIGDKNYNDNF 265 (351)
T ss_dssp ---SS------CSSCEEEESSCCGG-------GCC--CTTSCCSSCCEEEECCCGGGHHHHHTTEEEEEECCCGGGTTTC
T ss_pred ---Hh------cCcceeeecchhHH-------hcc--CCCCCCcCCCccCCcCCHHHHhhccccceEEEEeccccccCCe
Confidence 22 26778889986432 111 11222333457899999999988888776655432 122 2
Q ss_pred CChHHHHHHHhCCcEEEeCCC-CCccceecccCCccceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012436 368 FGISVVEYMAAGAIPIAHNSA-GPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIISMPETERLEMAAAARRRA 439 (464)
Q Consensus 368 ~~~~~~Ea~a~G~PvI~~~~~-~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 439 (464)
...-+.|+||... |...+.. .....++ + +.-+.+.+-+++.+.+.++-. +...+.++-+--...+
T Consensus 266 it~rvwe~~as~a-v~~~d~~fd~~~~i~-~----~a~fyv~nr~elid~in~~k~-~~~~r~e~l~~qh~il 331 (351)
T 1jg7_A 266 ITLRVWETMASDA-VMLIDEEFDTKHRII-N----DARFYVNNRAELIDRVNELKH-SDVLRKEMLSIQHDIL 331 (351)
T ss_dssp CCHHHHHHHTSSS-EEEEEGGGCTTCCSC-S----CGGGEECSHHHHHHHHHHHHH-CHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHhhhh-HhhhhcccCcccccc-c----CceeEecCHHHHHHHHhhccc-hHHHHHHHHHHHHHHH
Confidence 3345899999876 4333322 2212233 2 344888899999999999999 9888887766555444
No 128
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=54.69 E-value=47 Score=30.30 Aligned_cols=65 Identities=11% Similarity=0.179 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLA 86 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~ 86 (464)
+|.+++++-+..+++..++-+.+||+|+-. | .+++..++.++...| .+|.+.++..-..+..+.+
T Consensus 132 tQaLaDl~TI~E~~~~G~~l~glkva~vGD------~-~rva~Sl~~~~~~~G--~~v~~~~P~~~~p~~~~~~ 196 (355)
T 4a8p_A 132 TQELGDLCTMVEHLPEGKKLEDCKVVFVGD------A-TQVCFSLGLITTKMG--MNFVHFGPEGFQLNEEHQA 196 (355)
T ss_dssp HHHHHHHHHHHHTCCTTCCGGGCEEEEESC------C-CHHHHHHHHHHHHTT--CEEEEECCTTSSCCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEEECC------C-chhHHHHHHHHHHcC--CEEEEECCCccCCCHHHHH
Confidence 689999988877764211456789998743 2 788999999999999 8888888765333334433
No 129
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=54.06 E-value=65 Score=23.96 Aligned_cols=107 Identities=11% Similarity=0.099 Sum_probs=64.4
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a~-- 378 (464)
..+++++.+.+ ...+.+....++.|. .|.... +.++..+.+.. .|++++-.. .+.-|..+++.+..
T Consensus 7 ~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 77 (142)
T 3cg4_A 7 KGDVMIVDDDA-----HVRIAVKTILSDAGF--HIISAD--SGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNS 77 (142)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTT
T ss_pred CCeEEEEcCCH-----HHHHHHHHHHHHCCe--EEEEeC--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 67788887643 455677777777653 344333 34677777665 577665432 34456667777654
Q ss_pred ---CCcEEEe-CCCCC--ccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAH-NSAGP--KMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~-~~~~~--~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|+. ..... ..+.... |..+++.. +.+++.++|..++.
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~~~~---g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 78 LEQGIAIVMLTAKNAPDAKMIGLQE---YVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp CCTTEEEEEEECTTCCCCSSTTGGG---GEEEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHhc---CccEEEeCCCCHHHHHHHHHHHHH
Confidence 4677764 32211 1122233 55566664 99999999988875
No 130
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=53.94 E-value=59 Score=24.71 Aligned_cols=109 Identities=10% Similarity=0.001 Sum_probs=60.3
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcC-CCCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSM-IDEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps-~~e~~~~~~~Ea~a~-- 378 (464)
..+++++.+.+ ...+.+++..++.+....+.... +.++..+.+. ..|++++-. ..+.-|..+++.+..
T Consensus 15 ~~~iLivdd~~-----~~~~~l~~~L~~~~~~~~v~~~~--~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 87 (152)
T 3eul_A 15 KVRVVVGDDHP-----LFREGVVRALSLSGSVNVVGEAD--DGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYE 87 (152)
T ss_dssp CEEEEEECSSH-----HHHHHHHHHHHHHSSEEEEEEES--SHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTT
T ss_pred eEEEEEEcCCH-----HHHHHHHHHHhhCCCeEEEEEeC--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 56777776542 44456666666654211121222 3355555553 367766543 344455566665543
Q ss_pred -CCcEEEeCCCCCcc---ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 -GAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 -G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|......... +.... |..+++.. +.+++.++|..++.
T Consensus 88 ~~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 88 LPTRVLLISAHDEPAIVYQALQQ---GAAGFLLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHT---TCSEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEccCCHHHHHHHHHc---CCCEEEecCCCHHHHHHHHHHHHc
Confidence 56676643222211 22333 56677764 99999999999887
No 131
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=53.81 E-value=54 Score=29.93 Aligned_cols=95 Identities=13% Similarity=-0.020 Sum_probs=54.5
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
...++.+|-= .-| ..+++++... ++++++.+.+.. .+..++.+++++++..+... .+
T Consensus 6 ~~~vgiiG~G--~ig-~~~~~~l~~~--------~~~~lv~v~d~~-------~~~~~~~a~~~~~~~~~~~~-----~~ 62 (362)
T 1ydw_A 6 QIRIGVMGCA--DIA-RKVSRAIHLA--------PNATISGVASRS-------LEKAKAFATANNYPESTKIH-----GS 62 (362)
T ss_dssp CEEEEEESCC--TTH-HHHHHHHHHC--------TTEEEEEEECSS-------HHHHHHHHHHTTCCTTCEEE-----SS
T ss_pred ceEEEEECch--HHH-HHHHHHHhhC--------CCcEEEEEEcCC-------HHHHHHHHHHhCCCCCCeee-----CC
Confidence 4667777741 111 2334444322 477777665543 14556667777653222222 34
Q ss_pred HHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 349 LVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 349 ~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
+.++++ .+|+++..+......-.+.+++..|++|++-.
T Consensus 63 ~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~V~~EK 102 (362)
T 1ydw_A 63 YESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEK 102 (362)
T ss_dssp HHHHHHCTTCCEEEECCCGGGHHHHHHHHHTTTCEEEECS
T ss_pred HHHHhcCCCCCEEEEcCChHHHHHHHHHHHHCCCeEEEec
Confidence 556676 48988776544433344678999999999853
No 132
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=53.60 E-value=27 Score=32.71 Aligned_cols=33 Identities=24% Similarity=0.119 Sum_probs=19.8
Q ss_pred HHhhhcCCcEEEecccccccchh---hhccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPL---ARIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~---~~~~~~p~v~ 166 (464)
+++.+.++|+|+..+.......+ +-..|+++++
T Consensus 90 ~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~ 125 (412)
T 4gqa_A 90 ELVNDPQVDVVDITSPNHLHYTMAMAAIAAGKHVYC 125 (412)
T ss_dssp HHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCCeEe
Confidence 44677789988755554443332 2256777665
No 133
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=53.34 E-value=47 Score=29.84 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLA 86 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~ 86 (464)
+|.+++++-+..++ ++-+.+||+|+-. | .+++..++.++...| .++.+.++..-..+..+.+
T Consensus 139 tQaLaDl~Ti~e~~---g~l~glkva~vGD------~-~rva~Sl~~~~~~~G--~~v~~~~P~~~~~~~~~~~ 200 (323)
T 3gd5_A 139 CQVVADLLTIRENF---GRLAGLKLAYVGD------G-NNVAHSLLLGCAKVG--MSIAVATPEGFTPDPAVSA 200 (323)
T ss_dssp HHHHHHHHHHHHHH---SCCTTCEEEEESC------C-CHHHHHHHHHHHHHT--CEEEEECCTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCCCEEEEECC------C-CcHHHHHHHHHHHcC--CEEEEECCCcccCCHHHHH
Confidence 68899988887665 3456789999733 2 788999999999999 8888888765333344433
No 134
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=53.32 E-value=50 Score=24.65 Aligned_cols=107 Identities=9% Similarity=0.092 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a~-- 378 (464)
..+++++.+.+ ...+.+....+..|. .|.... +.++..+.+.. .|++++-.. .+.-|..+++.+..
T Consensus 4 ~~~Ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~ 74 (136)
T 2qzj_A 4 QTKILIIDGDK-----DNCQKLKGFLEEKGI--SIDLAY--NCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVT 74 (136)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHTTTC--EEEEES--SHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTC
T ss_pred CCeEEEEcCCH-----HHHHHHHHHHHHCCC--EEEEEC--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCC
Confidence 56777887643 445667776665543 343322 33666666553 577765432 33345666666643
Q ss_pred CCcEEEeCCCCCcc---ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 GAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|......... +.... |..+++.. +.+++.+++..++.
T Consensus 75 ~~~ii~ls~~~~~~~~~~~~~~---ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 75 TCPIVYMTYINEDQSILNALNS---GGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCCEEEEESCCCHHHHHHHHHT---TCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHc---CCcEEEECCCCHHHHHHHHHHHHH
Confidence 57777643222211 22333 56677764 99999999988775
No 135
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=52.15 E-value=27 Score=27.82 Aligned_cols=71 Identities=13% Similarity=0.034 Sum_probs=40.8
Q ss_pred HHHhcCcEEEEcCC-CCCCChHHHH---HHHhCCcEEEeCCC----CCc-cc-------eecccC-C---------ccce
Q 012436 351 KLLGGAVVGIHSMI-DEHFGISVVE---YMAAGAIPIAHNSA----GPK-MD-------IVLEED-G---------QQTG 404 (464)
Q Consensus 351 ~~l~~ad~~v~ps~-~e~~~~~~~E---a~a~G~PvI~~~~~----~~~-~~-------~v~~~~-~---------~~~g 404 (464)
+.+..||++|.--. .+.-+-+.+| |.+.|+||++-... |.. .+ +.++.. . ..+|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 45889998776421 2222334444 78899999986322 110 00 100000 0 1277
Q ss_pred eecCCHHHHHHHHHHHH
Q 012436 405 FLAQNAEEYADAIVKII 421 (464)
Q Consensus 405 ~~~~~~~~la~~i~~l~ 421 (464)
.++.+.+++.++|.+.+
T Consensus 145 ~~~~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVSSEEDLLEEIKQRL 161 (162)
T ss_dssp EEESSHHHHHHHHHHTC
T ss_pred eEEeCHHHHHHHHHHHh
Confidence 78889999999887754
No 136
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=52.09 E-value=76 Score=24.15 Aligned_cols=107 Identities=11% Similarity=0.120 Sum_probs=61.7
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHH---
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMA--- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a--- 377 (464)
..+++++.+.+ ...+.+.....+.|. .|.... +.++..+.+.. .|++++-.. .+.-|..+++.+.
T Consensus 3 ~~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~ 73 (155)
T 1qkk_A 3 APSVFLIDDDR-----DLRKAMQQTLELAGF--TVSSFA--SATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALD 73 (155)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--CHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred CCEEEEEeCCH-----HHHHHHHHHHHHcCc--EEEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 45777777543 445667777766553 344333 34666666554 577766432 3344555555553
Q ss_pred hCCcEEEeCCCCCcc---ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 AGAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 ~G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.++|+|+........ +.... |..+++.. +.+++..+|..++.
T Consensus 74 ~~~pii~ls~~~~~~~~~~~~~~---g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 74 PDLPMILVTGHGDIPMAVQAIQD---GAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp TTSCEEEEECGGGHHHHHHHHHT---TCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHhc---CCCeEEeCCCCHHHHHHHHHHHHH
Confidence 367887643222211 12233 55677664 99999999998886
No 137
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=51.14 E-value=1e+02 Score=25.60 Aligned_cols=106 Identities=10% Similarity=0.094 Sum_probs=49.8
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||+++... +| ..+..+.+++.+....+++..+.+... ...........++ +++.+....+..
T Consensus 1 ~ri~vl~Sg----~g--snl~ali~~~~~~~~~~~i~~Vis~~~---~~~~~~~A~~~gI------p~~~~~~~~~~~-- 63 (212)
T 1jkx_A 1 MNIVVLISG----NG--SNLQAIIDACKTNKIKGTVRAVFSNKA---DAFGLERARQAGI------ATHTLIASAFDS-- 63 (212)
T ss_dssp CEEEEEESS----CC--HHHHHHHHHHHTTSSSSEEEEEEESCT---TCHHHHHHHHTTC------EEEECCGGGCSS--
T ss_pred CEEEEEEEC----Cc--HHHHHHHHHHHcCCCCceEEEEEeCCC---chHHHHHHHHcCC------cEEEeCcccccc--
Confidence 578876542 23 457777888776543455544333321 1222333444555 333222111100
Q ss_pred cCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEee
Q 012436 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTH 169 (464)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h 169 (464)
+ -..-....+.+++.+||+++.. ++...++ +....+.+ ++-+|
T Consensus 64 ---r-------~~~~~~~~~~l~~~~~Dliv~a-gy~~il~~~~l~~~~~~-~iNiH 108 (212)
T 1jkx_A 64 ---R-------EAYDRELIHEIDMYAPDVVVLA-GFMRILSPAFVSHYAGR-LLNIH 108 (212)
T ss_dssp ---H-------HHHHHHHHHHHGGGCCSEEEES-SCCSCCCHHHHHHTTTS-EEEEE
T ss_pred ---h-------hhccHHHHHHHHhcCCCEEEEe-ChhhhCCHHHHhhccCC-EEEEc
Confidence 0 0001234566889999988843 3343444 33333322 34557
No 138
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=51.07 E-value=74 Score=23.71 Aligned_cols=107 Identities=9% Similarity=0.079 Sum_probs=64.3
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc---CcEEEEcCC-CC-CCChHHHHHHH-
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG---AVVGIHSMI-DE-HFGISVVEYMA- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~---ad~~v~ps~-~e-~~~~~~~Ea~a- 377 (464)
..+++++.+.+ ...+.++...++.|. .|.. ..+.++..+.+.. .|++++-.. .+ .-|..+++.+.
T Consensus 5 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3h5i_A 5 DKKILIVEDSK-----FQAKTIANILNKYGY--TVEI--ALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQ 75 (140)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEE--ESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHH
T ss_pred CcEEEEEeCCH-----HHHHHHHHHHHHcCC--EEEE--ecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHh
Confidence 56778887543 456777777777653 3433 3344677777643 588776543 23 44555665554
Q ss_pred -hCCcEEEeCCCCC---ccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 -AGAIPIAHNSAGP---KMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 -~G~PvI~~~~~~~---~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|+...... ..+.... |..+++.. +++++.++|..++.
T Consensus 76 ~~~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 76 ISELPVVFLTAHTEPAVVEKIRSV---TAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp HCCCCEEEEESSSSCCCCGGGGGS---CEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHhC---CCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3778876432222 1222333 56667764 99999999998886
No 139
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=50.75 E-value=54 Score=29.39 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSL 84 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~ 84 (464)
+|.+++++-+..++ ++-+.+||+|+-+ | .+++..++.++...| .+|.+.++..-..+..+
T Consensus 137 tQaLaDl~Ti~e~~---g~l~gl~va~vGD------~-~rva~Sl~~~~~~~g--~~v~~~~P~~~~~~~~~ 196 (315)
T 1pvv_A 137 CQALADYMTIWEKK---GTIKGVKVVYVGD------G-NNVAHSLMIAGTKLG--ADVVVATPEGYEPDEKV 196 (315)
T ss_dssp HHHHHHHHHHHHHH---SCCTTCEEEEESC------C-CHHHHHHHHHHHHTT--CEEEEECCTTCCCCHHH
T ss_pred HHHHHHHHHHHHHh---CCcCCcEEEEECC------C-cchHHHHHHHHHHCC--CEEEEECCccccCCHHH
Confidence 68999998887765 3446789999733 2 689999999999999 88888887653333334
No 140
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=50.71 E-value=13 Score=27.21 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=34.5
Q ss_pred EEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcC
Q 012436 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM 363 (464)
Q Consensus 307 l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps 363 (464)
++++|.|-... -..+.+++.+++.|++-.|.-.+. .++.+.+..+|+++..+
T Consensus 7 ll~Cg~G~sTS--~l~~k~~~~~~~~gi~~~i~a~~~---~~~~~~~~~~Dvil~~p 58 (106)
T 1e2b_A 7 YLFSSAGMSTS--LLVSKMRAQAEKYEVPVIIEAFPE---TLAGEKGQNADVVLLGP 58 (106)
T ss_dssp EEECSSSTTTH--HHHHHHHHHHHHSCCSEEEEEECS---SSTTHHHHHCSEEEECT
T ss_pred EEECCCchhHH--HHHHHHHHHHHHCCCCeEEEEecH---HHHHhhccCCCEEEEcc
Confidence 45555554332 456789999999998744444443 45666678899888653
No 141
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=50.25 E-value=18 Score=33.43 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=56.7
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
+++.++.+|-=.--+ .-+.++..+..... ..|+++++-+.+... +..++.+++++.+ + . ..
T Consensus 24 kkirvgiIG~G~ig~---~H~~a~~~~~~~~~-~~~~~~lvav~d~~~-------~~a~~~a~~~g~~-~--~-----y~ 84 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGK---CHALAWNAVKTVFG-DVERPRLVHLAEANA-------GLAEARAGEFGFE-K--A-----TA 84 (393)
T ss_dssp CCCEEEEECCSHHHH---HHHHHHTTHHHHHC-SSCCCEEEEEECC---------TTHHHHHHHHTCS-E--E-----ES
T ss_pred CCccEEEEcCCHHHH---HHHHHHHhhhhhhc-cCCCcEEEEEECCCH-------HHHHHHHHHhCCC-e--e-----cC
Confidence 457788887411111 22344444332211 115778887776542 4566677777754 1 1 14
Q ss_pred HHHHHHhc--CcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 348 DLVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 348 ~~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
++.++++. .|+++..+....-.-...+|+..|++|++=.
T Consensus 85 d~~ell~~~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EK 125 (393)
T 4fb5_A 85 DWRALIADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEK 125 (393)
T ss_dssp CHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CHHHHhcCCCCcEEEECCChHHHHHHHHHHHhcCCeEEEcc
Confidence 55666764 6777766544433445789999999999854
No 142
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=50.13 E-value=87 Score=27.90 Aligned_cols=50 Identities=10% Similarity=-0.080 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCC--CcEEEccCC
Q 012436 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD--GNVEFYKNL 344 (464)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~ 344 (464)
+...+++..+.+.. |+...+++.+. ...--+.+.+++.|+. +.|.+.|+=
T Consensus 227 ~~~~~~~~~ll~~~----~~~~ai~~~nd------~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 227 ASGAEGVEMLLERG----AKFSALVASND------DMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HHHHHHHHHHHHTT----CCCSEEEESSH------HHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHHHHHHcCC----CCCeEEEECCh------HHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 44445566665544 46667777643 1122344556666654 788888874
No 143
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=50.09 E-value=27 Score=30.10 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=23.3
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
.|||++++|+.... +...+...++.+. +.+.++..++...
T Consensus 1 ~mrilvINPnts~~--~T~~i~~~~~~~~--~p~~~i~~~t~~~ 40 (245)
T 3qvl_A 1 SVRIQVINPNTSLA--MTETIGAAARAVA--APGTEILAVCPRA 40 (245)
T ss_dssp CEEEEEECSSCCHH--HHHHHHHHHHHHC--CTTEEEEEECCSS
T ss_pred CCEEEEEeCCCCHH--HHHHHHHHHHHhc--CCCCEEEEEeCCC
Confidence 38999999986422 2223333344443 3457888777543
No 144
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=49.87 E-value=55 Score=29.62 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLA 86 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~ 86 (464)
+|.+++++-+..++ ++-+.+||+|+-. ..+++..++.++...| .+|.+.++..-..++.+.+
T Consensus 161 tQaLaDl~TI~E~~---G~l~glkva~vGD-------~~nva~Sl~~~~~~~G--~~v~~~~P~~~~~~~~~~~ 222 (340)
T 4ep1_A 161 CQALADLMTIYEET---NTFKGIKLAYVGD-------GNNVCHSLLLASAKVG--MHMTVATPVGYRPNEEIVK 222 (340)
T ss_dssp HHHHHHHHHHHHHH---SCCTTCEEEEESC-------CCHHHHHHHHHHHHHT--CEEEEECCTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCCCEEEEECC-------CchhHHHHHHHHHHcC--CEEEEECCcccCCCHHHHH
Confidence 68999998887665 3456789999832 2678899999999999 8888888765333344433
No 145
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=49.83 E-value=8.3 Score=31.85 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=26.9
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceE
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCI 71 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~ 71 (464)
++|||+++..+ .|-.++.+..+++.+.+.|++++++
T Consensus 3 ~mmkilii~~S---~g~T~~la~~i~~~l~~~g~~v~~~ 38 (199)
T 2zki_A 3 CKPNILVLFYG---YGSIVELAKEIGKGAEEAGAEVKIR 38 (199)
T ss_dssp CCCEEEEEECC---SSHHHHHHHHHHHHHHHHSCEEEEE
T ss_pred CCcEEEEEEeC---ccHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35899988766 4567888888999999888544433
No 146
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=49.67 E-value=55 Score=29.10 Aligned_cols=53 Identities=23% Similarity=0.170 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+..++ ++-+.+||+|+-+ ..+++..++.++...| .+|.+.++..
T Consensus 136 tQaLaDl~Ti~e~~---g~l~gl~ia~vGD-------~~rva~Sl~~~~~~~g--~~v~~~~P~~ 188 (301)
T 2ef0_A 136 LQALADLLTLKEVF---GGLAGLEVAWVGD-------GNNVLNSLLEVAPLAG--LKVRVATPKG 188 (301)
T ss_dssp HHHHHHHHHHHHHH---SCCTTCEEEEESC-------CCHHHHHHHHHHHHHT--CEEEEECCTT
T ss_pred hHHHHHHHHHHHHh---CCcCCcEEEEECC-------CchhHHHHHHHHHHcC--CEEEEECCch
Confidence 68999998887765 3446789999644 2689999999999999 8888888764
No 147
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=49.64 E-value=20 Score=29.91 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=52.4
Q ss_pred CcEEEEEcCCCC-CccHHHHHHHHHHHHhcCCCCcEEEcc--CCChhHHHHHHhcCcEEEEcCCCCCC---------C--
Q 012436 304 RPRLQFVGSCRN-KSDEERLQSLKDKSIELKVDGNVEFYK--NLLYRDLVKLLGGAVVGIHSMIDEHF---------G-- 369 (464)
Q Consensus 304 ~~~l~i~G~~~~-~~~~~~~~~l~~~~~~~~l~~~v~~~g--~~~~~~~~~~l~~ad~~v~ps~~e~~---------~-- 369 (464)
.-++.++..... .+..++.+.+++..+++|.. +..+. ..+.++..+.+.+||.+++|- .+.+ |
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~--v~~~~i~~~~~~~~~~~l~~ad~I~l~G-G~~~~l~~~L~~~gl~ 103 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLL--VEELDIATESLGEITTKLRKNDFIYVTG-GNTFFLLQELKRTGAD 103 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCE--EEECCTTTSCHHHHHHHHHHSSEEEECC-SCHHHHHHHHHHHTHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCe--EEEEEecCCChHHHHHHHHhCCEEEECC-CCHHHHHHHHHHCChH
Confidence 346666654322 12235677888888888863 55442 124578888999999999884 2211 1
Q ss_pred hHHHHHHHhCCcEEEeCCC
Q 012436 370 ISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 370 ~~~~Ea~a~G~PvI~~~~~ 388 (464)
-.+-|+...|+|++.+..|
T Consensus 104 ~~l~~~~~~G~p~~G~sAG 122 (206)
T 3l4e_A 104 KLILEEIAAGKLYIGESAG 122 (206)
T ss_dssp HHHHHHHHTTCEEEEETHH
T ss_pred HHHHHHHHcCCeEEEECHH
Confidence 2256778889999987544
No 148
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=49.60 E-value=78 Score=28.69 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=20.7
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
+++++||+++-. ...-...++.|.+.. +++++.+.
T Consensus 2 M~~~~~vgiiG~--------G~~g~~~~~~l~~~~-~~~lvav~ 36 (354)
T 3db2_A 2 MYNPVGVAAIGL--------GRWAYVMADAYTKSE-KLKLVTCY 36 (354)
T ss_dssp CCCCEEEEEECC--------SHHHHHHHHHHTTCS-SEEEEEEE
T ss_pred CCCcceEEEEcc--------CHHHHHHHHHHHhCC-CcEEEEEE
Confidence 346789999832 223345677777652 36765444
No 149
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=48.98 E-value=96 Score=25.85 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=50.2
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
+|||+++... +| .-+..+.++..+...+.+|..+.++. +...........|+ +++.+....+..
T Consensus 2 m~riavl~Sg----~G--snl~ali~~~~~~~l~~eI~~Visn~---~~a~v~~~A~~~gI------p~~~~~~~~~~~- 65 (211)
T 3p9x_A 2 MKRVAIFASG----SG--TNAEAIIQSQKAGQLPCEVALLITDK---PGAKVVERVKVHEI------PVCALDPKTYPS- 65 (211)
T ss_dssp -CEEEEECCT----TC--HHHHHHHHHHHTTCCSSEEEEEEESC---SSSHHHHHHHTTTC------CEEECCGGGSSS-
T ss_pred CCEEEEEEeC----Cc--hHHHHHHHHHHcCCCCcEEEEEEECC---CCcHHHHHHHHcCC------CEEEeChhhcCc-
Confidence 4789887542 23 44667777775544345555544332 12233334445555 332222111100
Q ss_pred ccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEee
Q 012436 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTH 169 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h 169 (464)
+ -..-....+.+++.+||+++.. ++...++ +....+.. ++-+|
T Consensus 66 ----r-------~~~d~~~~~~l~~~~~Dliv~a-gy~~Il~~~~l~~~~~~-~iNiH 110 (211)
T 3p9x_A 66 ----K-------EAYEIEVVQQLKEKQIDFVVLA-GYMRLVGPTLLGAYEGR-IVNIH 110 (211)
T ss_dssp ----H-------HHHHHHHHHHHHHTTCCEEEES-SCCSCCCHHHHHHHTTS-EEEEE
T ss_pred ----h-------hhhHHHHHHHHHhcCCCEEEEe-CchhhcCHHHHhhccCC-eEEEC
Confidence 0 0001234566889999998843 3344444 33322222 45567
No 150
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=48.82 E-value=11 Score=32.69 Aligned_cols=47 Identities=6% Similarity=-0.038 Sum_probs=31.0
Q ss_pred cccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 26 VHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 26 ~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
|+-+.++.+|||+++..+...+|-....+..+++.+.+.| +++.++.
T Consensus 26 ~~~~~~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g--~eve~id 72 (247)
T 2q62_A 26 LRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFG--AEVKVFD 72 (247)
T ss_dssp GCCCCCCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTT--CEEEECC
T ss_pred hhhhccCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCC--CEEEEEE
Confidence 3334455678999998877665344556666788888778 4554443
No 151
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=48.72 E-value=87 Score=23.85 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=66.1
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHH---
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMA--- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a--- 377 (464)
..+++|+.+.+ ...+.+++..++.|. .|.... +.++..+.+.. .|++++-. ..+.-|..+++.+.
T Consensus 7 ~~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 7 AGEILIVEDSP-----TQAEHLKHILEETGY--QTEHVR--NGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHTTTC--EEEEES--SHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred CCcEEEEeCCH-----HHHHHHHHHHHHCCC--EEEEeC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 56788887643 455677777776653 343333 44777777765 57776643 34455667777664
Q ss_pred --hCCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 --AGAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 --~G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|+......... .... |..+++.. +.+++.++|..++.
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~~~~---g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 78 DLRTIPVILLTILSDPRDVVRSLEC---GADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp TTTTSCEEEEECCCSHHHHHHHHHH---CCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcCCCCEEEEECCCChHHHHHHHHC---CCCEEEeCCCCHHHHHHHHHHHHH
Confidence 3577776432222122 2233 55667764 99999999998875
No 152
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=48.68 E-value=37 Score=25.45 Aligned_cols=107 Identities=6% Similarity=0.034 Sum_probs=63.5
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHh-cCCCCcEEEccCCChhHHHHHHhc---CcEEEEcCC-C-CCCChHHHHHHH
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIE-LKVDGNVEFYKNLLYRDLVKLLGG---AVVGIHSMI-D-EHFGISVVEYMA 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~~~~~~~l~~---ad~~v~ps~-~-e~~~~~~~Ea~a 377 (464)
..+++|+.+.+ ...+.++...++ .|. .|.... +.++..+.+.. .|++++-.. . +.-|..+++.+.
T Consensus 4 ~~~ilivdd~~-----~~~~~l~~~L~~~~~~--~v~~~~--~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~ 74 (140)
T 3lua_A 4 DGTVLLIDYFE-----YEREKTKIIFDNIGEY--DFIEVE--NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIR 74 (140)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHHCCC--EEEEEC--SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHHhccCc--cEEEEC--CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHH
Confidence 45777776543 445667777766 543 343333 33666666655 677776543 2 334555666554
Q ss_pred h-----CCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 A-----GAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 ~-----G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
. .+|+|........+. .... |..+++.. +.+++.++|..++.
T Consensus 75 ~~~~~~~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~KP~~~~~l~~~i~~~~~ 126 (140)
T 3lua_A 75 NNSRTANTPVIIATKSDNPGYRHAALKF---KVSDYILKPYPTKRLENSVRSVLK 126 (140)
T ss_dssp HSGGGTTCCEEEEESCCCHHHHHHHHHS---CCSEEEESSCCTTHHHHHHHHHHC
T ss_pred hCcccCCCCEEEEeCCCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHHHH
Confidence 4 778876543322122 2233 56677764 99999999999987
No 153
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=48.11 E-value=8.5 Score=31.28 Aligned_cols=67 Identities=9% Similarity=-0.042 Sum_probs=40.4
Q ss_pred HhcCcEEEEcCCCCCCChH--HHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHc
Q 012436 353 LGGAVVGIHSMIDEHFGIS--VVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 353 l~~ad~~v~ps~~e~~~~~--~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~ 422 (464)
...||.+|... .++|.- +.|++..++||++-+.-+..+.++.+. ....-.+++|++++.+.+.+.+.
T Consensus 105 ~~~sda~Ivlp--Gg~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~-~~~~i~~~~~~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 105 ALSSNVLVAVG--MGPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSL-DAGLVHVAADVAGAIAAVKQLLA 173 (176)
T ss_dssp GGGCSEEEEES--CCHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHH-CTTTEEEESSHHHHHHHHHHHHH
T ss_pred HHhCCEEEEec--CCccHHHHHHHHHHhCCcEEEEcCcccccccCChh-hcCeEEEcCCHHHHHHHHHHHHH
Confidence 34577665432 234432 688999999999988633222233220 01122445699999999988765
No 154
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=47.95 E-value=1e+02 Score=26.97 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=57.7
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccccccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
|||++.....- ...-+..|+++|.+.| +|++..+..+.+.. ...+.+.++.++......
T Consensus 1 M~ILlTNDDGi----~ApGi~aL~~aL~~~g---~V~VVAP~~~qSg~--------g~siTl~~pl~~~~~~~~------ 59 (280)
T 1l5x_A 1 MKILVTNDDGV----HSPGLRLLYQFALSLG---DVDVVAPESPKSAT--------GLGITLHKPLRMYEVDLC------ 59 (280)
T ss_dssp CEEEEECSSCT----TCHHHHHHHHHHGGGS---EEEEEEESSCTTTS--------CSSCCCSSCBCEEEEECS------
T ss_pred CeEEEEcCCCC----CcHhHHHHHHHHHhCC---CEEEEecCCCCcCC--------cccccCCCCeEEEEeccC------
Confidence 78988766532 3345778889998887 67777776532221 112334444444333211
Q ss_pred cCcceehhhhc-hhhhHHHHHHhhhcCCcEEEec------ccc-----cccchh---hhccCceEEEEee
Q 012436 115 TYPRFTMIGQS-FGSVYLSWEALCKFTPLYYFDT------SGY-----AFTYPL---ARIFGCRVICYTH 169 (464)
Q Consensus 115 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~Dvv~~~------~~~-----~~~~~~---~~~~~~p~v~~~h 169 (464)
....|. .... ..+.......+ ..+||+|++- .+. ++.... +...|+|-|....
T Consensus 60 ~~~~~~-v~GTPaDCV~lal~~l-~~~PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~ 127 (280)
T 1l5x_A 60 GFRAIA-TSGTPSDTVYLATFGL-GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSA 127 (280)
T ss_dssp SSEEEE-ESSCHHHHHHHHHHHH-TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceEE-ECCcHHHHHHHHHhcC-CCCCCEEEECCccCCcCCccccccchhHHHHHHHHHcCCCeEEEEc
Confidence 001111 1111 13445555556 6789999841 111 111122 2268999987654
No 155
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=47.87 E-value=1.4e+02 Score=27.30 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=52.2
Q ss_pred hHHHHHHhcCcEEEEc--CCCC-CCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeec---CCHHHHHHHHHHH
Q 012436 347 RDLVKLLGGAVVGIHS--MIDE-HFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLA---QNAEEYADAIVKI 420 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~p--s~~e-~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~---~~~~~la~~i~~l 420 (464)
++..++++...+.+.. |..+ -..=++.+|+.+|+-+|.-..+.. .+++.. +.-+.+ ++++++|+-|..|
T Consensus 223 ~~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~-~~~~Pp----~SfI~~~dF~s~~~La~yL~~L 297 (371)
T 2nzw_A 223 KNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSV-AKDFNP----KSFVNVHDFKNFDEAIDYIKYL 297 (371)
T ss_dssp SCHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTG-GGTSCG----GGSEEGGGSSSHHHHHHHHHHH
T ss_pred ccHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCch-hhhCCC----CceEEcccCCCHHHHHHHHHHH
Confidence 4566778888877654 2222 223347899999986666544433 344432 222333 3999999999999
Q ss_pred HcCCHHHHHHHH
Q 012436 421 ISMPETERLEMA 432 (464)
Q Consensus 421 ~~~~~~~~~~~~ 432 (464)
-+ |++.+.+.-
T Consensus 298 ~~-n~~~Y~~y~ 308 (371)
T 2nzw_A 298 HT-HKNAYLDML 308 (371)
T ss_dssp HT-CHHHHHHHH
T ss_pred hc-CHHHHHHHH
Confidence 99 998887654
No 156
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=47.81 E-value=21 Score=29.43 Aligned_cols=71 Identities=14% Similarity=-0.008 Sum_probs=42.2
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChH--HHHHHH------hCCcEEEeCCCCCccceec-------c-cCC-c--cceeecC
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGIS--VVEYMA------AGAIPIAHNSAGPKMDIVL-------E-EDG-Q--QTGFLAQ 408 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~--~~Ea~a------~G~PvI~~~~~~~~~~~v~-------~-~~~-~--~~g~~~~ 408 (464)
.-.-+...||.+|.- ..|+|.- ++|++. .++||+.-+..+.+..++. + ... . ..-.+++
T Consensus 90 Rk~~~~~~sda~Ivl--PGG~GTl~El~e~lt~~q~g~~~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~~ 167 (191)
T 1t35_A 90 RKAKMSELADGFISM--PGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSS 167 (191)
T ss_dssp HHHHHHHHCSEEEEC--SCCHHHHHHHHHHHHTTSCSSCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEEES
T ss_pred HHHHHHHHCCEEEEe--CCCccHHHHHHHHHHHHHhCCCCCCEEEecCCcccchHHHHHHHHHHCCCCCHHHcCeEEEeC
Confidence 344455678977653 2556654 799996 8999999987555443321 1 000 0 1123345
Q ss_pred CHHHHHHHHHHH
Q 012436 409 NAEEYADAIVKI 420 (464)
Q Consensus 409 ~~~~la~~i~~l 420 (464)
|++++.+.+.+.
T Consensus 168 ~~~e~~~~l~~~ 179 (191)
T 1t35_A 168 RPDELIEQMQNY 179 (191)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHHh
Confidence 888888777653
No 157
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=47.75 E-value=15 Score=28.35 Aligned_cols=40 Identities=8% Similarity=-0.066 Sum_probs=27.6
Q ss_pred cc-eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEE
Q 012436 34 TT-SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (464)
Q Consensus 34 ~m-kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~ 73 (464)
.| |++|+....+.+.-..+-..+++.++...|+++.|+.+
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~ 44 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFL 44 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEEC
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45 59988876666544566678889999999965554443
No 158
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=47.60 E-value=76 Score=27.36 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=26.1
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
.|||++.....- ...-+..|+++|.+.| +|++..+..+
T Consensus 1 ~M~ILlTNDDGi----~apGi~aL~~~L~~~g---~V~VVAP~~~ 38 (254)
T 2v4n_A 1 SMRILLSNDDGV----HAPGIQTLAKALREFA---DVQVVAPDRN 38 (254)
T ss_dssp CCEEEEECSSCT----TCHHHHHHHHHHTTTS---EEEEEEESSC
T ss_pred CCeEEEEcCCCC----CCHHHHHHHHHHHhCC---cEEEEeeCCC
Confidence 489998766532 3345777888998865 6777777653
No 159
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=47.46 E-value=91 Score=27.77 Aligned_cols=80 Identities=8% Similarity=-0.071 Sum_probs=50.4
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++..+.|+|-. .. .+...+..+.... ++++.++|......+....+.+++.+++.|. .+.+. +
T Consensus 147 ~gl~va~vGD~-~~----rva~Sl~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~--~~~~~-----~ 209 (307)
T 2i6u_A 147 RGLRLSYFGDG-AN----NMAHSLLLGGVTA-----GIHVTVAAPEGFLPDPSVRAAAERRAQDTGA--SVTVT-----A 209 (307)
T ss_dssp TTCEEEEESCT-TS----HHHHHHHHHHHHT-----TCEEEEECCTTSCCCHHHHHHHHHHHHHHTC--CEEEE-----S
T ss_pred CCeEEEEECCC-Cc----CcHHHHHHHHHHC-----CCEEEEECCccccCCHHHHHHHHHHHHHcCC--eEEEE-----E
Confidence 35789999974 12 3344444444333 7899999975443343455556666667663 35443 4
Q ss_pred HHHHHHhcCcEEEEcCC
Q 012436 348 DLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~ 364 (464)
++.+.+..||++....+
T Consensus 210 d~~eav~~aDvvy~~~w 226 (307)
T 2i6u_A 210 DAHAAAAGADVLVTDTW 226 (307)
T ss_dssp CHHHHHTTCSEEEECCS
T ss_pred CHHHHhcCCCEEEecce
Confidence 66778999999887654
No 160
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=47.42 E-value=70 Score=28.46 Aligned_cols=43 Identities=16% Similarity=0.022 Sum_probs=23.8
Q ss_pred hcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 25 HVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 25 ~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
|=+.+.+...|||++. ||....=..+++.|.+.| ++|+.++..
T Consensus 5 ~~~~~~~~~~~~vlVT-------GatG~iG~~l~~~L~~~g--~~V~~~~r~ 47 (335)
T 1rpn_A 5 HHHHHHGSMTRSALVT-------GITGQDGAYLAKLLLEKG--YRVHGLVAR 47 (335)
T ss_dssp ----------CEEEEE-------TTTSHHHHHHHHHHHHTT--CEEEEEECC
T ss_pred cccccccccCCeEEEE-------CCCChHHHHHHHHHHHCC--CeEEEEeCC
Confidence 3355666777899886 455555567789999999 567776654
No 161
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=46.97 E-value=92 Score=23.61 Aligned_cols=111 Identities=11% Similarity=0.123 Sum_probs=67.3
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHH---
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMA--- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a--- 377 (464)
++++.|+-+.+ ...+.++...++.|.. .|.... +..+..+.++. .|+.++=- ..+--|..+++.+-
T Consensus 12 ~~rILiVDD~~-----~~r~~l~~~L~~~G~~-~v~~a~--~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 12 NMKILIVDDFS-----TMRRIVKNLLRDLGFN-NTQEAD--DGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp TCCEEEECSCH-----HHHHHHHHHHHHTTCC-CEEEES--SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred CCEEEEEeCCH-----HHHHHHHHHHHHcCCc-EEEEEC--CHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 67888886543 4567777778877753 343322 23555555554 57776543 34555777777764
Q ss_pred --hCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 --AGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 --~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|||.-...+..++.......|..+|+.. +++++.++|.++++
T Consensus 84 ~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 84 ELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp TTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4678886433323133322211266778875 99999999998875
No 162
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=46.86 E-value=86 Score=23.27 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=60.7
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCCCCCCChHHHHHHH---h
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDEHFGISVVEYMA---A 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a---~ 378 (464)
..+++++.+.+ ...+.+++..++.|. .|.... +.++..+.+.. .|+++.-...+.-|..+++.+. .
T Consensus 4 ~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~ 74 (142)
T 2qxy_A 4 TPTVMVVDESR-----ITFLAVKNALEKDGF--NVIWAK--NEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFP 74 (142)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHGGGTC--EEEEES--SHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCT
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCC
Confidence 45777777543 445667777766553 344333 33677677664 5776654322222334444443 3
Q ss_pred CCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 GAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|........+. .... |..+++.. +.+++.++|..++.
T Consensus 75 ~~pii~ls~~~~~~~~~~~~~~---g~~~~l~kP~~~~~l~~~i~~~~~ 120 (142)
T 2qxy_A 75 DTKVAVLSAYVDKDLIINSVKA---GAVDYILKPFRLDYLLERVKKIIS 120 (142)
T ss_dssp TCEEEEEESCCCHHHHHHHHHH---TCSCEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHC---CcceeEeCCCCHHHHHHHHHHHHh
Confidence 678776432222111 2223 55666664 99999999999887
No 163
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=46.64 E-value=46 Score=30.56 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=19.7
Q ss_pred HHhhhcCCcEEEecccccccchh---hhccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPL---ARIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~---~~~~~~p~v~ 166 (464)
+++.+.++|+|+..+.......+ +-..|+++++
T Consensus 88 ell~~~~iDaV~IatP~~~H~~~a~~al~aGkhVl~ 123 (393)
T 4fb5_A 88 ALIADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWC 123 (393)
T ss_dssp HHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCCCcEEEECCChHHHHHHHHHHHhcCCeEEE
Confidence 44777789988755554443332 2256777655
No 164
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=46.41 E-value=1e+02 Score=23.95 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC-----c-EEEEcCCCCCCChHHHHHHHh-CCcEEEeCCCCC--
Q 012436 320 ERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA-----V-VGIHSMIDEHFGISVVEYMAA-GAIPIAHNSAGP-- 390 (464)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a-----d-~~v~ps~~e~~~~~~~Ea~a~-G~PvI~~~~~~~-- 390 (464)
+..+.+++.+.++|+ .+.+.-.-...++.+.+.+| | +.+.|--+...+..+.+|++. ++|+|=-.....
T Consensus 28 di~~~l~~~a~~~g~--~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~a 105 (149)
T 2uyg_A 28 ELEALCEAWGAELGL--GVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQPLPVVEVHLTNLHA 105 (149)
T ss_dssp HHHHHHHHHHHHTTC--CEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGG
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhCCCCEEEEEecCccc
Confidence 455667777777765 36666655566777776654 3 567787788889999999865 889985332211
Q ss_pred ccc-----eecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 391 KMD-----IVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 391 ~~~-----~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
.++ ++.+ ...|.++. -.+...-+++.+++
T Consensus 106 RE~FRh~S~~s~---~a~GvI~G~G~~gY~lAl~~~~~ 140 (149)
T 2uyg_A 106 REEFRRHSVTAP---ACRGIVSGFGPLSYKLALVYLAE 140 (149)
T ss_dssp SCGGGGCCSSGG---GSSEEEESSTTHHHHHHHHHHHH
T ss_pred cccccccccccc---ceeEEEEecCHHHHHHHHHHHHH
Confidence 122 2333 44677776 77777777776654
No 165
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=46.34 E-value=56 Score=29.55 Aligned_cols=97 Identities=15% Similarity=0.023 Sum_probs=46.5
Q ss_pred ccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeee
Q 012436 27 HNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLY 106 (464)
Q Consensus 27 ~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (464)
.|...+++|||+++-. |+..+ ...+..+.+. .+++++.++... .+-.+.....+++. .+
T Consensus 16 ~n~~~~~mirigiIG~-----G~ig~--~~~~~~~~~~-~~~~lvav~d~~----~~~a~~~a~~~g~~-----~~---- 74 (350)
T 4had_A 16 ENLYFQSMLRFGIIST-----AKIGR--DNVVPAIQDA-ENCVVTAIASRD----LTRAREMADRFSVP-----HA---- 74 (350)
T ss_dssp ------CCEEEEEESC-----CHHHH--HTHHHHHHHC-SSEEEEEEECSS----HHHHHHHHHHHTCS-----EE----
T ss_pred ccccccCccEEEEEcC-----hHHHH--HHHHHHHHhC-CCeEEEEEECCC----HHHHHHHHHHcCCC-----ee----
Confidence 4556667799999822 22222 1234566654 247766555321 33334444455541 00
Q ss_pred cccccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhh---hccCceEEE
Q 012436 107 RRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLA---RIFGCRVIC 166 (464)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~---~~~~~p~v~ 166 (464)
+....+++...++|+|+..+.......++ -..|+++++
T Consensus 75 ----------------------y~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~ 115 (350)
T 4had_A 75 ----------------------FGSYEEMLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVC 115 (350)
T ss_dssp ----------------------ESSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred ----------------------eCCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHhcCCEEEE
Confidence 01122446777899887555544433322 256777655
No 166
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=45.90 E-value=73 Score=28.38 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhcccccccc-cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNR-TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+..++. +-+ .+||+|+-. ..+++..++.++...| .++.+.++..
T Consensus 127 tQaLaDl~Ti~e~~g---~l~~gl~va~vGD-------~~~va~Sl~~~~~~~G--~~v~~~~P~~ 180 (307)
T 3tpf_A 127 TQVLGDLFTIKEWNK---MQNGIAKVAFIGD-------SNNMCNSWLITAAILG--FEISIAMPKN 180 (307)
T ss_dssp HHHHHHHHHHHHTTC---CGGGCCEEEEESC-------SSHHHHHHHHHHHHHT--CEEEEECCTT
T ss_pred HHHHHHHHHHHHHhC---CCCCCCEEEEEcC-------CCccHHHHHHHHHHcC--CEEEEECCCc
Confidence 689999988877653 345 789999844 2478899999999999 8888888764
No 167
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=45.87 E-value=66 Score=24.83 Aligned_cols=98 Identities=13% Similarity=0.212 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC----c-EEEEcCCCCCCChHHHHHHHh-CCcEEEeCCCCC--c
Q 012436 320 ERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----V-VGIHSMIDEHFGISVVEYMAA-GAIPIAHNSAGP--K 391 (464)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a----d-~~v~ps~~e~~~~~~~Ea~a~-G~PvI~~~~~~~--~ 391 (464)
+..+.+++.+.++|+ .+.+.-.-...++.+.+.+| | +.+.|--+...+..+.+|++. ++|+|=-..... .
T Consensus 29 di~~~l~~~a~~~g~--~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aR 106 (143)
T 1gqo_A 29 DIETDLFQFAEALHI--QLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYAIRDAVSSISLPVVEVHLSNLYAR 106 (143)
T ss_dssp HHHHHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGS
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccHHHHHHHHhCCCCEEEEEecCcccc
Confidence 344566666777765 36666555556666666554 4 567787788889999999865 889885332211 1
Q ss_pred cc-----eecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 392 MD-----IVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 392 ~~-----~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
++ ++.+ ...|.++. -.+...-+++.+++
T Consensus 107 E~FRh~S~~s~---~a~GvI~G~G~~gY~lAl~~~~~ 140 (143)
T 1gqo_A 107 EEFRHQSVIAP---VAKGQIVGLGAEGYKLAVRYLLS 140 (143)
T ss_dssp CGGGGCCSSGG---GSSEEEESSTTHHHHHHHHHHHT
T ss_pred ccccccccccc---ceeEEEEecCHHHHHHHHHHHHH
Confidence 22 2233 35667776 67777777766553
No 168
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=45.86 E-value=70 Score=29.14 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhccccc----------ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCch
Q 012436 13 TAVLASILILASHVHNAR----------RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPD 82 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~----------~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~ 82 (464)
+|.+++++-+..++-+-+ .-+.+||+|+-. ..+++..++.++...| ++|.+.++..-..+.
T Consensus 157 tQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vGD-------~~nva~Sl~~~l~~lG--~~v~~~~P~~~~~~~ 227 (353)
T 3sds_A 157 LQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVGD-------ANNVLFDLAIAATKMG--VNVAVATPRGYEIPS 227 (353)
T ss_dssp HHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEESC-------CCHHHHHHHHHHHHTT--CEEEEECCTTCCCCH
T ss_pred HHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEECC-------CchHHHHHHHHHHHcC--CEEEEECCcccCCCH
Confidence 689999988877764321 126789999743 2368889999999999 888888876432334
Q ss_pred hHHH
Q 012436 83 SLLA 86 (464)
Q Consensus 83 ~~~~ 86 (464)
.+.+
T Consensus 228 ~i~~ 231 (353)
T 3sds_A 228 HIVE 231 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 169
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=45.68 E-value=68 Score=29.27 Aligned_cols=93 Identities=9% Similarity=-0.046 Sum_probs=55.2
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++..++.+|- ..-+...++.++. . |+++++-+.+.. .+..++.+++++... . ..
T Consensus 25 ~~irvgiiG~--G~~~~~~~~~~~~----~-----~~~~lvav~d~~-------~~~a~~~a~~~~~~~---~-----~~ 78 (361)
T 3u3x_A 25 DELRFAAVGL--NHNHIYGQVNCLL----R-----AGARLAGFHEKD-------DALAAEFSAVYADAR---R-----IA 78 (361)
T ss_dssp -CCEEEEECC--CSTTHHHHHHHHH----H-----TTCEEEEEECSC-------HHHHHHHHHHSSSCC---E-----ES
T ss_pred cCcEEEEECc--CHHHHHHHHHHhh----c-----CCcEEEEEEcCC-------HHHHHHHHHHcCCCc---c-----cC
Confidence 3477888884 2223334444443 1 488888777653 145666677765321 1 25
Q ss_pred HHHHHHhc--CcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 348 DLVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 348 ~~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
++.++++. .|+++..+....-.-.+.+|+..|++|++-.
T Consensus 79 ~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 79 TAEEILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp CHHHHHTCTTCCEEEECCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCeEEEeC
Confidence 66677775 7887766433222234689999999999854
No 170
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=45.54 E-value=55 Score=25.57 Aligned_cols=96 Identities=10% Similarity=0.135 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc----Cc-EEEEcCCCCCCChHHHHHH-HhCCcEEEeCCCCC--ccc
Q 012436 322 LQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG----AV-VGIHSMIDEHFGISVVEYM-AAGAIPIAHNSAGP--KMD 393 (464)
Q Consensus 322 ~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad-~~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~~~~--~~~ 393 (464)
.+.+++.+.++|+ .+.+.-.-...++.+.+.+ +| +.+.|--+...+.++.+|+ +.++|+|=-..... .++
T Consensus 38 ~~~l~~~a~~~g~--~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~~~~P~VEVHiSNi~aRE~ 115 (153)
T 3lwz_A 38 VSQLEIQAQGMDV--ALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVALRDALLGVQIPFIEIHLSNVHAREP 115 (153)
T ss_dssp HHHHHHHHHHTTE--EEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHHHTCCEEEEESSCGGGSCG
T ss_pred HHHHHHHHHHcCC--EEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHHHHHHHHhcCCCEEEEEcCCccccch
Confidence 4555566666654 3555544445566666554 45 5677877778899999988 45899995432221 122
Q ss_pred e-----ecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 394 I-----VLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 394 ~-----v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
+ +.+ ...|.++. -.+...-+++.+++
T Consensus 116 FRh~S~~s~---~a~GvI~G~G~~gY~lAl~~~~~ 147 (153)
T 3lwz_A 116 FRHHSYLSD---IAVGVICGLGADGYNFALQAAVN 147 (153)
T ss_dssp GGGCCSSGG---GSSEEEESSTTHHHHHHHHHHHH
T ss_pred hhhcccccc---cceEEEEecChhHHHHHHHHHHH
Confidence 2 222 34667776 77777777766654
No 171
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=45.46 E-value=42 Score=24.70 Aligned_cols=70 Identities=13% Similarity=-0.121 Sum_probs=43.6
Q ss_pred HHHhcCcEEEEcCCCCCCChH-----HHHHHHhCCcEEEeCCCCCccceecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 351 KLLGGAVVGIHSMIDEHFGIS-----VVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 351 ~~l~~ad~~v~ps~~e~~~~~-----~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
+-++.+|++|..+...+.... +-.|...|+|+|+-...|. +++ .........-++. +.+.+.++|...++
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~-~~~-P~~l~~~a~~iV~Wn~~~I~~aI~~~~~ 109 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGL-ENV-PPELEAVSSEVVGWNPHCIRDALEDALD 109 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSS-SCC-CTTHHHHCSEEECSCHHHHHHHHHHHHC
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCC-CcC-CHHHHhhCceeccCCHHHHHHHHHhccC
Confidence 668889988876543332222 5667789999999876665 321 1100011223455 99999999988763
No 172
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=45.38 E-value=1e+02 Score=26.50 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=25.2
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
.||++.....- ...-+..|+++|.+.| +|+++.+..+
T Consensus 2 p~ILlTNDDGi----~apGi~~L~~~l~~~g---~V~VvAP~~~ 38 (251)
T 2wqk_A 2 PTFLLVNDDGY----FSPGINALREALKSLG---RVVVVAPDRN 38 (251)
T ss_dssp CEEEEECSSCT----TCHHHHHHHHHHTTTS---EEEEEEESSC
T ss_pred CEEEEEcCCCC----CcHHHHHHHHHHHhCC---CEEEEeeCCC
Confidence 57888766532 2345677889999988 4777777653
No 173
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=45.04 E-value=23 Score=32.40 Aligned_cols=93 Identities=13% Similarity=0.028 Sum_probs=53.7
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++..++.+|-= .-|....+.++... |+++++-+.+.. .+..++.++++|++ . . .
T Consensus 26 ~~~rigiIG~G--~~g~~~~~~~l~~~--------~~~~l~av~d~~-------~~~~~~~a~~~g~~----~---~--~ 79 (350)
T 3rc1_A 26 NPIRVGVIGCA--DIAWRRALPALEAE--------PLTEVTAIASRR-------WDRAKRFTERFGGE----P---V--E 79 (350)
T ss_dssp CCEEEEEESCC--HHHHHTHHHHHHHC--------TTEEEEEEEESS-------HHHHHHHHHHHCSE----E---E--E
T ss_pred CceEEEEEcCc--HHHHHHHHHHHHhC--------CCeEEEEEEcCC-------HHHHHHHHHHcCCC----C---c--C
Confidence 44778888741 11111234444332 577877554432 14556666666643 1 1 4
Q ss_pred HHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 348 DLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 348 ~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
++.++++ ..|+++..+....-.-.+.+++..|++|++-.
T Consensus 80 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EK 120 (350)
T 3rc1_A 80 GYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEK 120 (350)
T ss_dssp SHHHHHTCTTCSEEEECCCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeC
Confidence 5566676 47888776544433344688999999999854
No 174
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=45.04 E-value=1.2e+02 Score=27.13 Aligned_cols=79 Identities=10% Similarity=-0.029 Sum_probs=50.2
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++..|.|+|-. ..=..-++.++..+ ++++.++|......+....+..++.+++.|. .+.+. .
T Consensus 156 ~glkva~vGD~--~rva~Sl~~~~~~~---------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~--~v~~~-----~ 217 (323)
T 3gd5_A 156 AGLKLAYVGDG--NNVAHSLLLGCAKV---------GMSIAVATPEGFTPDPAVSARASEIAGRTGA--EVQIL-----R 217 (323)
T ss_dssp TTCEEEEESCC--CHHHHHHHHHHHHH---------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTC--CEEEE-----S
T ss_pred CCCEEEEECCC--CcHHHHHHHHHHHc---------CCEEEEECCCcccCCHHHHHHHHHHHHHcCC--eEEEE-----C
Confidence 45789999976 21133444455444 7899999975444444555666666666653 34443 4
Q ss_pred HHHHHHhcCcEEEEcCC
Q 012436 348 DLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~ 364 (464)
++.+.+..||++....+
T Consensus 218 d~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 218 DPFEAARGAHILYTDVW 234 (323)
T ss_dssp CHHHHHTTCSEEEECCC
T ss_pred CHHHHhcCCCEEEEece
Confidence 56678999999887654
No 175
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=44.82 E-value=54 Score=29.77 Aligned_cols=33 Identities=12% Similarity=-0.095 Sum_probs=19.4
Q ss_pred HHhhhcCCcEEEecccccccchh---hhccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPL---ARIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~---~~~~~~p~v~ 166 (464)
+++.+.++|+|+........... +...|+++++
T Consensus 83 ~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~ 118 (350)
T 3rc1_A 83 ALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLA 118 (350)
T ss_dssp HHHTCTTCSEEEECCCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCcEEE
Confidence 34666789988865554444332 2256777655
No 176
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=44.79 E-value=79 Score=22.22 Aligned_cols=104 Identities=6% Similarity=0.023 Sum_probs=58.4
Q ss_pred EEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHH-----
Q 012436 306 RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMA----- 377 (464)
Q Consensus 306 ~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a----- 377 (464)
+++++.+.+ ...+.+.+..++.|. ++.... +.++..+.+.. .|++++-. ..+.-|..+++.+.
T Consensus 3 ~iliv~~~~-----~~~~~l~~~l~~~g~--~v~~~~--~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~ 73 (119)
T 2j48_A 3 HILLLEEED-----EAATVVCEMLTAAGF--KVIWLV--DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQAD 73 (119)
T ss_dssp EEEEECCCH-----HHHHHHHHHHHHTTC--EEEEES--CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCC
T ss_pred EEEEEeCCH-----HHHHHHHHHHHhCCc--EEEEec--CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcccc
Confidence 456666532 445666666666553 344333 33566555543 57766543 23344566677665
Q ss_pred hCCcEEEe-CCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 AGAIPIAH-NSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 ~G~PvI~~-~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|+. +.... .+.... |..+++.. +.+++.+.+..++.
T Consensus 74 ~~~~ii~~~~~~~~-~~~~~~---g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 74 PHPPLVLFLGEPPV-DPLLTA---QASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp SSCCCEEEESSCCS-SHHHHH---HCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCCEEEEeCCCCc-hhhhhc---CHHHhccCCCCHHHHHHHHHHHhc
Confidence 45677764 33322 233333 45566654 88899988877654
No 177
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=44.77 E-value=12 Score=34.55 Aligned_cols=58 Identities=5% Similarity=-0.052 Sum_probs=45.4
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcC
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM 363 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps 363 (464)
+.-=+|+|.-.........+.+++++++.|....+...|.++.+.+..+ ..|++|..+
T Consensus 265 ~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF--~iD~fV~va 322 (378)
T 3lzd_A 265 KKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGF--PFEAYVVVA 322 (378)
T ss_dssp CEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTTS--CCSEEEECS
T ss_pred CEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC--CCCEEEEec
Confidence 4445777765445566778899999999988777778899999999877 499999875
No 178
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=44.72 E-value=96 Score=26.60 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=25.7
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
|||++.....- ...-+..|+++|.+.| +|++..+..+
T Consensus 1 M~ILlTNDDGi----~apGi~aL~~~l~~~g---~V~VVAP~~~ 37 (247)
T 1j9j_A 1 MRILVTNDDGI----QSKGIIVLAELLSEEH---EVFVVAPDKE 37 (247)
T ss_dssp CEEEEECSSCT----TCHHHHHHHHHHTTTS---EEEEEEESSC
T ss_pred CeEEEEcCCCC----CcHhHHHHHHHHHhCC---CEEEEecCCC
Confidence 78888766532 3345778889998876 6777777653
No 179
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=44.69 E-value=58 Score=29.27 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLL 85 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~ 85 (464)
+|.+++++-+..++ ++-+.+||+|+-+ ..+++..++.++...| .+|.+.++..-..+..+.
T Consensus 137 tQaLaDl~Ti~e~~---g~l~gl~va~vGD-------~~~va~Sl~~~~~~~G--~~v~~~~P~~~~~~~~~~ 197 (321)
T 1oth_A 137 IQILADYLTLQEHY---SSLKGLTLSWIGD-------GNNILHSIMMSAAKFG--MHLQAATPKGYEPDASVT 197 (321)
T ss_dssp HHHHHHHHHHHHHH---SCCTTCEEEEESC-------SSHHHHHHHTTTGGGT--CEEEEECCTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHh---CCcCCcEEEEECC-------chhhHHHHHHHHHHcC--CeEEEECCccccCCHHHH
Confidence 68999999887765 3446789999644 2478899999999999 888888876533334343
No 180
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=44.62 E-value=1.6e+02 Score=25.70 Aligned_cols=104 Identities=12% Similarity=-0.052 Sum_probs=62.7
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC--------ccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 275 VAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK--------SDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 275 ~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~--------~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
+.........+..++.+..+++.+ ..++-.+.-..+ ...+..+.+++.++++|++- +.-..+.
T Consensus 42 IAgpc~~~~~e~a~~~a~~~k~~g------a~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~~---~te~~d~ 112 (276)
T 1vs1_A 42 IAGPCSVESWEQVREAALAVKEAG------AHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPV---VTEVLDP 112 (276)
T ss_dssp EEECSBCCCHHHHHHHHHHHHHHT------CSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCCE---EEECCCG
T ss_pred EEecCCCCCHHHHHHHHHHHHHhC------CCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCcE---EEecCCH
Confidence 333456667888888888887764 233333321110 02466788999999999873 2233333
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChHHHH-HHHhCCcEEEeCCC
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGISVVE-YMAAGAIPIAHNSA 388 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~~~E-a~a~G~PvI~~~~~ 388 (464)
+.+..+-.-+|++-.+|. +.....+++ +...|+||+.++-.
T Consensus 113 ~~~~~l~~~vd~~kIgs~-~~~n~~ll~~~a~~~kPV~lk~G~ 154 (276)
T 1vs1_A 113 RHVETVSRYADMLQIGAR-NMQNFPLLREVGRSGKPVLLKRGF 154 (276)
T ss_dssp GGHHHHHHHCSEEEECGG-GTTCHHHHHHHHHHTCCEEEECCT
T ss_pred HHHHHHHHhCCeEEECcc-cccCHHHHHHHHccCCeEEEcCCC
Confidence 444444334899988874 233344554 44579999998744
No 181
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=44.60 E-value=43 Score=30.13 Aligned_cols=91 Identities=16% Similarity=0.095 Sum_probs=50.3
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHH
Q 012436 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDL 349 (464)
Q Consensus 270 ~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~ 349 (464)
..++.+|.=. -| ..+++++... ++++++-+.+... +..++.+++++.+. ...++
T Consensus 6 ~rigiiG~G~--ig-~~~~~~l~~~--------~~~~~~av~d~~~-------~~~~~~a~~~~~~~--------~~~~~ 59 (329)
T 3evn_A 6 VRYGVVSTAK--VA-PRFIEGVRLA--------GNGEVVAVSSRTL-------ESAQAFANKYHLPK--------AYDKL 59 (329)
T ss_dssp EEEEEEBCCT--TH-HHHHHHHHHH--------CSEEEEEEECSCS-------STTCC---CCCCSC--------EESCH
T ss_pred eEEEEEechH--HH-HHHHHHHHhC--------CCcEEEEEEcCCH-------HHHHHHHHHcCCCc--------ccCCH
Confidence 5677776411 11 2345555433 4777776655432 22334444444321 12566
Q ss_pred HHHHh--cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 350 VKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 350 ~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
.++++ ..|+++..+....-.-.+.+++..|++|++-.
T Consensus 60 ~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EK 98 (329)
T 3evn_A 60 EDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEK 98 (329)
T ss_dssp HHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred HHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEcc
Confidence 67777 68988776544333344688999999999865
No 182
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=44.52 E-value=52 Score=24.81 Aligned_cols=65 Identities=8% Similarity=0.050 Sum_probs=35.8
Q ss_pred cCcEEEEcCC-CCCCChHHHHHHHh---CCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 355 GAVVGIHSMI-DEHFGISVVEYMAA---GAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 355 ~ad~~v~ps~-~e~~~~~~~Ea~a~---G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..|++++-.. .+.-|..+++.+.. .+|+|+-......+. .... |..+++.. +.+++..+|..++.
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~---ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRA---GVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTT---TEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHh---CCceeEcCCCCHHHHHHHHHHHHh
Confidence 4566665432 23334444444432 567776432222122 2233 55667764 99999999998875
No 183
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=44.45 E-value=1.1e+02 Score=27.90 Aligned_cols=80 Identities=13% Similarity=-0.013 Sum_probs=50.2
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++..+.|+|-. ...=..-++.++..+ ++++.++|......++...+.+++.+++.|. .+.+. +
T Consensus 175 ~gl~va~vGD~-~~rva~Sl~~~~~~l---------G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~--~v~~~-----~ 237 (359)
T 2w37_A 175 QGLTLTFMGDG-RNNVANSLLVTGAIL---------GVNIHIVAPKALFPTEETQNIAKGFAEKSGA--KLVIT-----D 237 (359)
T ss_dssp TTCEEEEESCT-TSHHHHHHHHHHHHH---------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTC--CEEEE-----S
T ss_pred CCeEEEEECCC-ccchHHHHHHHHHHc---------CCEEEEECCccccCCHHHHHHHHHHHHHcCC--eEEEE-----e
Confidence 45889999975 122223344444444 7899999974333333455556666667663 35444 4
Q ss_pred HHHHHHhcCcEEEEcCC
Q 012436 348 DLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~ 364 (464)
++.+.+..||++....|
T Consensus 238 d~~eav~~aDvvytd~w 254 (359)
T 2w37_A 238 DLDEGLKGSNVVYTDVW 254 (359)
T ss_dssp CHHHHHTTCSEEEECCS
T ss_pred CHHHHhcCCCEEEEccc
Confidence 66778999999887655
No 184
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=44.32 E-value=65 Score=27.91 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=24.5
Q ss_pred cccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 28 NARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 28 ~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
.+++++..+|+++.+..... =.......+.+++.+.| +++.++..
T Consensus 2 ~L~~~~~~~Ig~i~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~ 46 (293)
T 3l6u_A 2 SLTSPKRNIVGFTIVNDKHE-FAQRLINAFKAEAKANK--YEALVATS 46 (293)
T ss_dssp -------CEEEEEESCSCSH-HHHHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred CCCCCCCcEEEEEEecCCcH-HHHHHHHHHHHHHHHcC--CEEEEECC
Confidence 35667778999998876432 23444555666677777 66666554
No 185
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=44.30 E-value=68 Score=28.85 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
+|.+++++-+..++ ++-+.+||+|+-+ |..+++..++.++...| .+|.+.++..-
T Consensus 149 tQaLaDl~Ti~e~~---g~l~gl~va~vGD------~~~rva~Sl~~~~~~~G--~~v~~~~P~~~ 203 (325)
T 1vlv_A 149 TQALADLMTIEENF---GRLKGVKVVFMGD------TRNNVATSLMIACAKMG--MNFVACGPEEL 203 (325)
T ss_dssp HHHHHHHHHHHHHH---SCSTTCEEEEESC------TTSHHHHHHHHHHHHTT--CEEEEESCGGG
T ss_pred HHHHHHHHHHHHHh---CCcCCcEEEEECC------CCcCcHHHHHHHHHHCC--CEEEEECCccc
Confidence 68999999887765 3446789999744 23589999999999998 88888887643
No 186
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=43.92 E-value=20 Score=27.72 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=25.4
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEE
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~ 73 (464)
|||+++ |.+..|.+++++..+++.|.+.| +++.++
T Consensus 2 ~ki~I~--Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~ 36 (147)
T 2hna_A 2 ADITLI--SGSTLGGAEYVAEHLAEKLEEAG--FTTETL 36 (147)
T ss_dssp CSEEEE--CCTTSCCCHHHHHHHHHHHHHTT--CCEEEE
T ss_pred CeEEEE--EECCchHHHHHHHHHHHHHHHCC--CceEEe
Confidence 466666 34444789999999999999988 444443
No 187
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=43.75 E-value=1.1e+02 Score=27.42 Aligned_cols=79 Identities=16% Similarity=0.081 Sum_probs=50.0
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++..+.|+|-. ..+...+..+.... ++++.++|...-..+....+.+++.+++.|. .+.+. +
T Consensus 154 ~gl~va~vGD~------~rva~Sl~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~--~~~~~-----~ 215 (315)
T 1pvv_A 154 KGVKVVYVGDG------NNVAHSLMIAGTKL-----GADVVVATPEGYEPDEKVIKWAEQNAAESGG--SFELL-----H 215 (315)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHT-----TCEEEEECCTTCCCCHHHHHHHHHHHHHHTC--EEEEE-----S
T ss_pred CCcEEEEECCC------cchHHHHHHHHHHC-----CCEEEEECCccccCCHHHHHHHHHHHHHcCC--eEEEE-----e
Confidence 34789999964 23344444444443 7899999975443343455556666666652 34443 4
Q ss_pred HHHHHHhcCcEEEEcCC
Q 012436 348 DLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~ 364 (464)
++.+.+..||++....+
T Consensus 216 d~~eav~~aDvvy~~~w 232 (315)
T 1pvv_A 216 DPVKAVKDADVIYTDVW 232 (315)
T ss_dssp CHHHHTTTCSEEEECCC
T ss_pred CHHHHhCCCCEEEEcce
Confidence 66778999999887655
No 188
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=43.55 E-value=9.5 Score=29.68 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=25.5
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
|||+++..+ ..|.++.++..+++.|.+.|+ ++.++.
T Consensus 2 ~ki~I~y~S--~tGnT~~~A~~ia~~l~~~g~--~v~~~~ 37 (148)
T 3f6r_A 2 SKVLIVFGS--STGNTESIAQKLEELIAAGGH--EVTLLN 37 (148)
T ss_dssp CEEEEEEEC--SSSHHHHHHHHHHHHHHTTTC--EEEEEE
T ss_pred CeEEEEEEC--CCchHHHHHHHHHHHHHhCCC--eEEEEe
Confidence 577766443 346789999999999999884 444443
No 189
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=43.21 E-value=33 Score=31.80 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCCCCCCChHHHHHHHhCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGA 380 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a~G~ 380 (464)
|+++++-+.+... +..++.+++++.+ .. .++.++++. .|+++..+....-.-.+.+|+..|+
T Consensus 26 ~~~~l~av~d~~~-------~~~~~~a~~~g~~----~~-----~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk 89 (387)
T 3moi_A 26 PDAQIVAACDPNE-------DVRERFGKEYGIP----VF-----ATLAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGL 89 (387)
T ss_dssp TTEEEEEEECSCH-------HHHHHHHHHHTCC----EE-----SSHHHHHHHSCCSEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCeEEEEEEeCCH-------HHHHHHHHHcCCC----eE-----CCHHHHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCC
Confidence 5778776665431 4455666666543 11 455566664 8988876544333334689999999
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
+|++-.
T Consensus 90 ~Vl~EK 95 (387)
T 3moi_A 90 HIIVEK 95 (387)
T ss_dssp EEEECS
T ss_pred ceeeeC
Confidence 999854
No 190
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=42.77 E-value=13 Score=30.65 Aligned_cols=37 Identities=8% Similarity=0.146 Sum_probs=26.7
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
+|||+++..+. .|-.++.+..+++.+.+.| +++.++.
T Consensus 5 M~kilii~~S~--~g~T~~la~~i~~~l~~~g--~~v~~~~ 41 (200)
T 2a5l_A 5 SPYILVLYYSR--HGATAEMARQIARGVEQGG--FEARVRT 41 (200)
T ss_dssp CCEEEEEECCS--SSHHHHHHHHHHHHHHHTT--CEEEEEB
T ss_pred cceEEEEEeCC--CChHHHHHHHHHHHHhhCC--CEEEEEE
Confidence 46899886653 4567888888999999888 4444443
No 191
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=42.60 E-value=99 Score=22.75 Aligned_cols=107 Identities=9% Similarity=0.069 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh-------cCcEEEEcCC-CCCCChHHHHHH
Q 012436 305 PRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG-------GAVVGIHSMI-DEHFGISVVEYM 376 (464)
Q Consensus 305 ~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~-------~ad~~v~ps~-~e~~~~~~~Ea~ 376 (464)
.++.++.+.+ ...+.++...+..|.. .|..... .++..+.+. ..|++++-.. .+.-|..+++.+
T Consensus 3 ~~ILivdD~~-----~~~~~l~~~L~~~g~~-~v~~~~~--~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~l 74 (133)
T 2r25_B 3 VKILVVEDNH-----VNQEVIKRMLNLEGIE-NIELACD--GQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMI 74 (133)
T ss_dssp SCEEEECSCH-----HHHHHHHHHHHHTTCC-CEEEESS--HHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred ceEEEEcCCH-----HHHHHHHHHHHHcCCc-eEEEECC--HHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHH
Confidence 4566766542 4456666666665432 3433332 255555554 3588776432 334456666666
Q ss_pred Hh----CCcEEEe-CCCCC--ccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 377 AA----GAIPIAH-NSAGP--KMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 377 a~----G~PvI~~-~~~~~--~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.. ..|+|.. ..... ..+.... |..+++.. +.+++.++|.+++.
T Consensus 75 r~~~~~~~~ii~lt~~~~~~~~~~~~~~---ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 75 RRDLGYTSPIVALTAFADDSNIKECLES---GMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp HHHSCCCSCEEEEESCCSHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHHHCT
T ss_pred HhhcCCCCCEEEEECCCCHHHHHHHHHc---CCCEEEeCCCCHHHHHHHHHHHHH
Confidence 42 4677753 33322 0122233 56677775 99999999998875
No 192
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=42.21 E-value=1.6e+02 Score=25.83 Aligned_cols=36 Identities=3% Similarity=-0.109 Sum_probs=21.9
Q ss_pred HHhhhcCCcEEEecccccccchhhhccCceEEEEee
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTH 169 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h 169 (464)
+.+...++|+|+...............++|+|+..-
T Consensus 63 ~~l~~~~~DlIiai~t~aa~a~~~~~~~iPVVf~~v 98 (302)
T 3lkv_A 63 RQFVGENPDVLVGIATPTAQALVSATKTIPIVFTAV 98 (302)
T ss_dssp HHHHTTCCSEEEEESHHHHHHHHHHCSSSCEEEEEE
T ss_pred HHHHhcCCcEEEEcCCHHHHHHHhhcCCCCeEEEec
Confidence 335567899998543322222233367899998766
No 193
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=42.19 E-value=1.7e+02 Score=25.29 Aligned_cols=102 Identities=5% Similarity=-0.048 Sum_probs=62.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC--------ccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 277 QFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK--------SDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 277 ~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~--------~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
........+..++.++.+++. ...++..+.-..+ ...+-.+.+++.+++.|++- +.-..+...
T Consensus 29 gpc~~~~~e~a~~~a~~l~~~------Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~---~te~~d~~~ 99 (262)
T 1zco_A 29 GPCSIESREQIMKVAEFLAEV------GIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVT---VTEVMDTRH 99 (262)
T ss_dssp ECSBCCCHHHHHHHHHHHHHT------TCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEE---EEECCCGGG
T ss_pred eCCCCCCHHHHHHHHHHHHHc------CCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcE---EEeeCCHHh
Confidence 446677889999999888875 3445554432111 11566788999999998762 222233344
Q ss_pred HHHHHhcCcEEEEcCCCCCCChHHHHHH-HhCCcEEEeCCC
Q 012436 349 LVKLLGGAVVGIHSMIDEHFGISVVEYM-AAGAIPIAHNSA 388 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~~ 388 (464)
+..+...+|++-.+|. +.....+++++ ..|+||+.++-.
T Consensus 100 ~~~l~~~vd~~kIga~-~~~n~~ll~~~a~~~kPV~lk~G~ 139 (262)
T 1zco_A 100 VELVAKYSDILQIGAR-NSQNFELLKEVGKVENPVLLKRGM 139 (262)
T ss_dssp HHHHHHHCSEEEECGG-GTTCHHHHHHHTTSSSCEEEECCT
T ss_pred HHHHHhhCCEEEECcc-cccCHHHHHHHHhcCCcEEEecCC
Confidence 4333333899888875 22234444444 479999998744
No 194
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=41.95 E-value=49 Score=28.44 Aligned_cols=45 Identities=2% Similarity=0.047 Sum_probs=23.9
Q ss_pred cccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 28 NARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 28 ~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
+.++++..+|+++.+..... -....+..+.+++.+.| +.+.++..
T Consensus 2 ~L~~~~~~~Ig~i~~~~~~~-~~~~~~~gi~~~~~~~g--~~~~~~~~ 46 (277)
T 3e61_A 2 SLYKRKSKLIGLLLPDMSNP-FFTLIARGVEDVALAHG--YQVLIGNS 46 (277)
T ss_dssp --------CEEEEESCTTSH-HHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCccCCCCEEEEEECCCCCH-HHHHHHHHHHHHHHHCC--CEEEEEeC
Confidence 34566778899998875433 24455566667777788 56555543
No 195
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=41.77 E-value=30 Score=29.23 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=53.3
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (464)
..||+|+ -++.- |+..++..+..+.+.+ .++++.++++...-.+.+. +..
T Consensus 3 vvKiGii--KlGNi-gts~~idl~LDErAdR-edI~vrv~gsGaKm~pe~~-~~~------------------------- 52 (283)
T 1qv9_A 3 VAKAIFI--KCGNL-GTSMMMDMLLDERADR-EDVEFRVVGTSVKMDPECV-EAA------------------------- 52 (283)
T ss_dssp CEEEEEE--ECSCC-HHHHHTTGGGSTTSCC-SSEEEEEEECTTCCSHHHH-HHH-------------------------
T ss_pred eEEEEEE--Eeccc-chHHHHHHHHHhhhcc-CCceEEEeccCCCCCHHHH-HHH-------------------------
Confidence 3588887 34444 6777776666666665 3577777776542222211 111
Q ss_pred ccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhh----ccCceEEEEeeCCc
Q 012436 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LAR----IFGCRVICYTHYPT 172 (464)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~----~~~~p~v~~~h~p~ 172 (464)
......+.++++||+++..+..+..-+ -++ ..++|.|+....|.
T Consensus 53 ---------------~~~~~~~~~~~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 102 (283)
T 1qv9_A 53 ---------------VEMALDIAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPG 102 (283)
T ss_dssp ---------------HHHHHHHHHHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGG
T ss_pred ---------------HHHhhhhhhhcCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcc
Confidence 111112236789998886666544322 233 48999998777554
No 196
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=41.71 E-value=1e+02 Score=22.64 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=64.1
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a~-- 378 (464)
..+++++.+.+ ...+.+++..++.+. .+...... ++..+.+.. .|++++-.. .+.-|..+++.+..
T Consensus 7 ~~~ilivdd~~-----~~~~~l~~~L~~~~~--~v~~~~~~--~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (137)
T 3hdg_A 7 ALKILIVEDDT-----DAREWLSTIISNHFP--EVWSAGDG--EEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGG 77 (137)
T ss_dssp CCCEEEECSCH-----HHHHHHHHHHHTTCS--CEEEESSH--HHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred ccEEEEEeCCH-----HHHHHHHHHHHhcCc--EEEEECCH--HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 56788887643 445667777666332 34444433 666666643 677776543 44455666665543
Q ss_pred -CCcEEEeCCCCCcc---ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 -GAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 -G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|+.......+ +.... |..+++.. +.+++.++|.+++.
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 78 AKPYVIVISAFSEMKYFIKAIEL---GVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CCCEEEECCCCCCHHHHHHHHHH---CCSEECCSSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCcChHHHHHHHhC---CcceeEcCCCCHHHHHHHHHHHHH
Confidence 67777654332211 22333 56667764 99999999999886
No 197
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=41.69 E-value=1.1e+02 Score=26.05 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=48.3
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCch------hHHHHHHhhcCcccCCCceeeeee
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPD------SLLARAVDRFGVELLHPPKVVHLY 106 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 106 (464)
.+++|+++.+-+..- +..+--.+..+.+.|++|.++++|........ .........+|+. .+..+.
T Consensus 2 ~~~~vL~v~aHPDDe---~l~~Ggtia~~~~~G~~V~vv~lT~G~~g~~~~~~~R~~E~~~A~~~LGv~-----~~~~L~ 73 (242)
T 2ixd_A 2 SGLHILAFGAHADDV---EIGMAGTIAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGVK-----TRLNLA 73 (242)
T ss_dssp CCCSEEEEESSTTHH---HHHHHHHHHHHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTCC-----EEEEEE
T ss_pred CCccEEEEEeCCChH---HHhHHHHHHHHHHCCCeEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHcCCC-----eEEECC
Confidence 347888887765432 11111223355667988888888855321111 1222334455653 112222
Q ss_pred cccccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecc
Q 012436 107 RRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTS 148 (464)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~ 148 (464)
... ..++. .......+.+.+++.+||+|+.+.
T Consensus 74 ~~D----~~~~~------~~~~~~~l~~~ir~~~PdvV~t~~ 105 (242)
T 2ixd_A 74 MPD----RGLYM------KEEYIREIVKVIRTYKPKLVFAPY 105 (242)
T ss_dssp ECT----TCCCC------CHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred CCC----CCCCC------hHHHHHHHHHHHHHcCCCEEEECC
Confidence 111 01110 112234556678889999998543
No 198
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=41.46 E-value=1e+02 Score=22.69 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=63.6
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHh-cCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHHh-
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIE-LKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMAA- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a~- 378 (464)
..+++++.+.+ ...+.++...++ .|.. .+...... ++..+.+.. .|++++-.. .+.-|..+++.+..
T Consensus 8 ~~~iLivdd~~-----~~~~~l~~~L~~~~~~~-~v~~~~~~--~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 8 DFSILIIEDDK-----EFADMLTQFLENLFPYA-KIKIAYNP--FDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHHHHCTTC-EEEEECSH--HHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCH-----HHHHHHHHHHHhccCcc-EEEEECCH--HHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhC
Confidence 56788887643 455667777766 5532 14444433 666666654 577766433 34455667776654
Q ss_pred ----CCcEEEe-CCCCCc--cceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ----GAIPIAH-NSAGPK--MDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ----G~PvI~~-~~~~~~--~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
++|+|+. ...... .+.... |..+++.. +.+++.++|..++.
T Consensus 80 ~~~~~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 80 PATANIIVIAMTGALTDDNVSRIVAL---GAETCFGKPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp TTTTTSEEEEEESSCCHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ccccCCcEEEEeCCCCHHHHHHHHhc---CCcEEEeCCCCHHHHHHHHHHHHH
Confidence 5677764 332220 112233 55677664 99999999998886
No 199
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=41.43 E-value=1.1e+02 Score=28.88 Aligned_cols=78 Identities=13% Similarity=-0.111 Sum_probs=44.1
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGA 380 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~ 380 (464)
|+++++-+.+... +..+.+.+...++|++..-.+.+ ..+++.++++ ..|+++..+....-.-.+.+|+..|+
T Consensus 43 ~~~~lvav~d~~~----~~~~~~a~~~~~~g~~~~~~~~~--~~~~~~~ll~~~~vD~V~i~tp~~~h~~~~~~al~aGk 116 (444)
T 2ixa_A 43 DDVEIVAFADPDP----YMVGRAQEILKKNGKKPAKVFGN--GNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAMKAGK 116 (444)
T ss_dssp TTEEEEEEECSCH----HHHHHHHHHHHHTTCCCCEEECS--STTTHHHHTTCTTCCEEEECCCGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEEeCCH----HHHHHHHHHHHhcCCCCCceecc--CCCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCC
Confidence 5788876665431 22233333333455432222332 1246777787 47887776543333334678999999
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
+|++-.
T Consensus 117 hV~~EK 122 (444)
T 2ixa_A 117 IVGMEV 122 (444)
T ss_dssp EEEECC
T ss_pred eEEEeC
Confidence 999853
No 200
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=40.75 E-value=55 Score=29.20 Aligned_cols=68 Identities=10% Similarity=-0.104 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcE
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIP 382 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pv 382 (464)
|+++++-+.+... +..++.+++++.+ .. -+.+++ -..+|+++..+....-.-.+.+++..|++|
T Consensus 29 ~~~~lvav~d~~~-------~~~~~~~~~~g~~----~~--~~~~~l---~~~~D~V~i~tp~~~h~~~~~~al~~G~~v 92 (319)
T 1tlt_A 29 SDWTLQGAWSPTR-------AKALPICESWRIP----YA--DSLSSL---AASCDAVFVHSSTASHFDVVSTLLNAGVHV 92 (319)
T ss_dssp SSEEEEEEECSSC-------TTHHHHHHHHTCC----BC--SSHHHH---HTTCSEEEECSCTTHHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEECCCH-------HHHHHHHHHcCCC----cc--CcHHHh---hcCCCEEEEeCCchhHHHHHHHHHHcCCeE
Confidence 4778774444322 2344455555543 11 122443 467898887654443334467889999999
Q ss_pred EEeC
Q 012436 383 IAHN 386 (464)
Q Consensus 383 I~~~ 386 (464)
++-.
T Consensus 93 ~~eK 96 (319)
T 1tlt_A 93 CVDK 96 (319)
T ss_dssp EEES
T ss_pred EEeC
Confidence 9854
No 201
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=40.70 E-value=87 Score=28.31 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSL 84 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~ 84 (464)
+|.+++++-+..++.+ +-+.+||+|+-+ |..+++..++.++...| .+|.+.++..-..+..+
T Consensus 136 tQ~LaDl~Ti~e~~g~--~l~gl~va~vGD------~~~~va~Sl~~~~~~~G--~~v~~~~P~~~~p~~~~ 197 (335)
T 1dxh_A 136 TQMLADVLTMREHSDK--PLHDISYAYLGD------ARNNMGNSLLLIGAKLG--MDVRIAAPKALWPHDEF 197 (335)
T ss_dssp HHHHHHHHHHHHTCSS--CGGGCEEEEESC------CSSHHHHHHHHHHHHTT--CEEEEECCGGGSCCHHH
T ss_pred HHHHHHHHHHHHHcCC--CcCCeEEEEecC------CccchHHHHHHHHHHcC--CEEEEECCcccCCCHHH
Confidence 6899999988776521 346689999744 23589999999999999 88888887653333334
No 202
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=40.54 E-value=26 Score=30.87 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=26.2
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
|||++. ||+.-.=..|++.|.+.| ++|+.++...
T Consensus 1 MkILVT-------GatGfIG~~L~~~L~~~G--~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVG-------GGTGFIGTALTQLLNARG--HEVTLVSRKP 34 (298)
T ss_dssp CEEEEE-------TTTSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred CEEEEE-------CCCCHHHHHHHHHHHHCC--CEEEEEECCC
Confidence 788875 577777788999999999 5666776643
No 203
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=46.60 E-value=5.9 Score=33.01 Aligned_cols=42 Identities=5% Similarity=-0.066 Sum_probs=26.4
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceE
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCI 71 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~ 71 (464)
|..+.+|||+++..+...+|=....+..+++.+.+ |.+++++
T Consensus 1 ~~~~~~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g~~v~~i 42 (199)
T 3s2y_A 1 MTTTSPLHFVTLLGSLRKASFNAAVARALPEIAPE-GIAITPL 42 (199)
Confidence 34557799999987776553445555556666665 7544443
No 204
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=40.37 E-value=65 Score=25.18 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC----c-EEEEcCCCCCCChHHHHHHHh-CCcEEEeCCCCC--c
Q 012436 320 ERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA----V-VGIHSMIDEHFGISVVEYMAA-GAIPIAHNSAGP--K 391 (464)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a----d-~~v~ps~~e~~~~~~~Ea~a~-G~PvI~~~~~~~--~ 391 (464)
+..+.+++.+.++|+ .+.+.-.-...++.+.+.+| | +.+.|--+...+..+.+|++. ++|+|=-..... .
T Consensus 30 di~~~l~~~a~~~g~--~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aR 107 (154)
T 1uqr_A 30 DIEQHLQQSAQAQGY--ELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVSIPFIEVHLSNVHAR 107 (154)
T ss_dssp HHHHHHHHHHHHTTC--EEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHTCCEEEEESSCGGGS
T ss_pred HHHHHHHHHHHHCCC--EEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCCCCEEEEEecCcccc
Confidence 445566666666665 36666555556777776655 4 567787777788889998854 899995432211 1
Q ss_pred cc-----eecccCCccceeecC-CHHHHHHHHHHHH
Q 012436 392 MD-----IVLEEDGQQTGFLAQ-NAEEYADAIVKII 421 (464)
Q Consensus 392 ~~-----~v~~~~~~~~g~~~~-~~~~la~~i~~l~ 421 (464)
++ ++.+ ...|.++. -.+...-+++.++
T Consensus 108 E~FRh~S~~s~---~a~GvI~G~G~~gY~lAl~a~~ 140 (154)
T 1uqr_A 108 EPFRHHSYLSD---VAKGVICGLGAKGYDYALDFAI 140 (154)
T ss_dssp CGGGSCCSSGG---GSSEEEESSTTHHHHHHHHHHH
T ss_pred cccccccccCc---ceeEEEEecCHHHHHHHHHHHH
Confidence 22 2333 45677776 6667666666654
No 205
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=40.21 E-value=1.1e+02 Score=27.67 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=49.3
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++..+.|+|-. ...=..-++.++..+ ++++.++|......+....+..++.+++.|. .+.+. +
T Consensus 154 ~gl~ia~vGD~-~~~va~Sl~~~~~~~---------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~--~v~~~-----~ 216 (333)
T 1duv_G 154 NEMTLVYAGDA-RNNMGNSMLEAAALT---------GLDLRLVAPQACWPEAALVTECRALAQQNGG--NITLT-----E 216 (333)
T ss_dssp GGCEEEEESCT-TSHHHHHHHHHHHHH---------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTC--EEEEE-----S
T ss_pred CCcEEEEECCC-ccchHHHHHHHHHHc---------CCEEEEECCcccCCCHHHHHHHHHHHHHcCC--eEEEE-----E
Confidence 34789999974 122223344444444 7899999974333333455556666666652 35444 4
Q ss_pred HHHHHHhcCcEEEEcCC
Q 012436 348 DLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~ 364 (464)
++.+.+..||++....+
T Consensus 217 d~~eav~~aDvvytd~w 233 (333)
T 1duv_G 217 DVAKGVEGADFIYTDVW 233 (333)
T ss_dssp CHHHHHTTCSEEEECCS
T ss_pred CHHHHhCCCCEEEeCCc
Confidence 56778999999887655
No 206
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=39.84 E-value=24 Score=25.91 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=24.8
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhh-CC-CCceE
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEE-SP-DLDCI 71 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~-g~-~~~v~ 71 (464)
||++|+....+.+....+....++..+.+. |+ ++.++
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vf 40 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLF 40 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEE
Confidence 478887766655434445568889999998 86 55433
No 207
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=39.82 E-value=2.2e+02 Score=25.87 Aligned_cols=107 Identities=10% Similarity=-0.021 Sum_probs=64.1
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC--------ccHHHHHHHHHHHHhcCCCCcEEEccC
Q 012436 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK--------SDEERLQSLKDKSIELKVDGNVEFYKN 343 (464)
Q Consensus 272 i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~--------~~~~~~~~l~~~~~~~~l~~~v~~~g~ 343 (464)
++.+.........+.+++.++.+++.+ ..++-.+.-..+ ...+..+.+++.++++|++- +.-.
T Consensus 107 ~~vIAgpcs~es~e~a~~~a~~~k~aG------a~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~~---~te~ 177 (350)
T 1vr6_A 107 FTIIAGPCSVEGREMLMETAHFLSELG------VKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYV---VTEA 177 (350)
T ss_dssp EEEEEECSBCCCHHHHHHHHHHHHHTT------CCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEE---EEEC
T ss_pred eEEEEeCCCcCCHHHHHHHHHHHHHcC------CCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCcE---EEEe
Confidence 334444444667888888888887764 333333321111 02466788999999998862 2333
Q ss_pred CChhHHHHHHhcCcEEEEcCCCCCCChHHHH-HHHhCCcEEEeCCC
Q 012436 344 LLYRDLVKLLGGAVVGIHSMIDEHFGISVVE-YMAAGAIPIAHNSA 388 (464)
Q Consensus 344 ~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~E-a~a~G~PvI~~~~~ 388 (464)
.+...+..+-.-+|++-.+|. +.....+++ +...|+||+.++-.
T Consensus 178 ~d~~~~~~l~~~vd~lkIgAr-~~~n~~LL~~va~~~kPVilk~G~ 222 (350)
T 1vr6_A 178 LGEDDLPKVAEYADIIQIGAR-NAQNFRLLSKAGSYNKPVLLKRGF 222 (350)
T ss_dssp SSGGGHHHHHHHCSEEEECGG-GTTCHHHHHHHHTTCSCEEEECCT
T ss_pred CCHHHHHHHHHhCCEEEECcc-cccCHHHHHHHHccCCcEEEcCCC
Confidence 344444444344899988874 222344444 44579999998744
No 208
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=39.82 E-value=1.1e+02 Score=27.45 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=50.1
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++..+.|+|-. ++ .+...+..+.... ++++.++|......++...+.+++.+++.|. .+.+. +
T Consensus 166 ~gl~va~vGD~---~~--rva~Sl~~~~~~~-----G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~--~v~~~-----~ 228 (325)
T 1vlv_A 166 KGVKVVFMGDT---RN--NVATSLMIACAKM-----GMNFVACGPEELKPRSDVFKRCQEIVKETDG--SVSFT-----S 228 (325)
T ss_dssp TTCEEEEESCT---TS--HHHHHHHHHHHHT-----TCEEEEESCGGGCCCHHHHHHHHHHHHHHCC--EEEEE-----S
T ss_pred CCcEEEEECCC---Cc--CcHHHHHHHHHHC-----CCEEEEECCccccCCHHHHHHHHHHHHHcCC--eEEEE-----c
Confidence 45789999963 11 3444444444443 7899999974333333445556666667652 34443 4
Q ss_pred HHHHHHhcCcEEEEcCC
Q 012436 348 DLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~ 364 (464)
++.+.+..||++....+
T Consensus 229 d~~eav~~aDvvyt~~w 245 (325)
T 1vlv_A 229 NLEEALAGADVVYTDVW 245 (325)
T ss_dssp CHHHHHTTCSEEEECCC
T ss_pred CHHHHHccCCEEEeccc
Confidence 56678999999887655
No 209
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=39.78 E-value=83 Score=28.33 Aligned_cols=57 Identities=11% Similarity=0.218 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhccc----ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHN----ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~----~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+..++.. .++-+.+||+|+-.. ..+++..++.++...| .+|.+.++..
T Consensus 136 tQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vGD~------~~~va~Sl~~~~~~~G--~~v~~~~P~~ 196 (328)
T 3grf_A 136 LQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCGDS------MNNVTYDLMRGCALLG--MECHVCCPDH 196 (328)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEESCC------SSHHHHHHHHHHHHHT--CEEEEECCSS
T ss_pred HHHHHHHHHHHHHhCCccccccccCCcEEEEeCCC------CcchHHHHHHHHHHcC--CEEEEECChH
Confidence 6899999888777641 114567899997541 2478899999999999 8888888764
No 210
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=39.75 E-value=1.4e+02 Score=27.04 Aligned_cols=121 Identities=10% Similarity=-0.030 Sum_probs=68.8
Q ss_pred hcCCEEEEcCH--HHHHHHHHHhCCCCCeEEecCCCCCCCCccCC----------CCCCCCCcEEEEEeccCCCCChHHH
Q 012436 220 SCADLAMVNSS--WTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP----------LERSTEYPAIISVAQFRPEKAHPLQ 287 (464)
Q Consensus 220 ~~ad~vi~~S~--~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~----------~~~~~~~~~i~~~G~~~~~K~~~~l 287 (464)
+.+|.|+.=.. ...+.+.+.. .+-|| |+.+ +...|.. ....-++..|.|+|-. ..=..-+
T Consensus 124 ~y~D~IviR~~~~~~~~~lA~~~----~vPVI-Nag~-~~~HPtQaLaDl~TI~E~~G~l~glkva~vGD~--~nva~Sl 195 (340)
T 4ep1_A 124 HYIDGIMIRTFSHADVEELAKES----SIPVI-NGLT-DDHHPCQALADLMTIYEETNTFKGIKLAYVGDG--NNVCHSL 195 (340)
T ss_dssp HHCSEEEEECSCHHHHHHHHHHC----SSCEE-EEEC-SSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC--CHHHHHH
T ss_pred HhCCEEEEecCChhHHHHHHHhC----CCCEE-eCCC-CCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCC--chhHHHH
Confidence 55787766544 4455665543 23334 4444 2222110 0011345889999965 1112334
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCC
Q 012436 288 LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 288 l~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~ 364 (464)
+.++..+ ++++.++|......++...+.+++.+++.|. .+.+. .++.+.+..||++....+
T Consensus 196 ~~~~~~~---------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~--~v~~~-----~d~~eav~~aDVvyt~~w 256 (340)
T 4ep1_A 196 LLASAKV---------GMHMTVATPVGYRPNEEIVKKALAIAKETGA--EIEIL-----HNPELAVNEADFIYTDVW 256 (340)
T ss_dssp HHHHHHH---------TCEEEEECCTTCCCCHHHHHHHHHHHHHHCC--CEEEE-----SCHHHHHTTCSEEEECCC
T ss_pred HHHHHHc---------CCEEEEECCcccCCCHHHHHHHHHHHHHcCC--eEEEE-----CCHHHHhCCCCEEEecCc
Confidence 4444444 7899999975444444555666666667653 35443 456678999999887665
No 211
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=39.66 E-value=1.6e+02 Score=27.08 Aligned_cols=97 Identities=13% Similarity=0.031 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcE-EEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 284 HPLQLEAFSVALRKLDADLPRPR-LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~p~~~-l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
+..+++.+.+..... +.-+ +++.++. ....+...+.+.+.+.+.+..-.+.-+...+.+++.+-+..+|.+++.
T Consensus 240 ~~~~~~~~~~~~~~~----~~~k~~i~~~S~-~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiig 314 (404)
T 2ohh_A 240 PMKIIEAYTGWATGM----VDERVTVIYDTM-HGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALG 314 (404)
T ss_dssp HHHHHHHHHHHHTTC----CCSEEEEEECCS-SSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHhccC----CCCcEEEEEECC-ChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEE
Confidence 445555554443211 2333 4444443 233334445555555443332222233444556677788899987664
Q ss_pred C--CCCCCChHH---HHHHH-------hCCcEEEe
Q 012436 363 M--IDEHFGISV---VEYMA-------AGAIPIAH 385 (464)
Q Consensus 363 s--~~e~~~~~~---~Ea~a-------~G~PvI~~ 385 (464)
+ +..+.+-.+ ++.+. .|+|+.+.
T Consensus 315 sP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~ 349 (404)
T 2ohh_A 315 APTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVF 349 (404)
T ss_dssp CCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEEE
T ss_pred CccccccchHHHHHHHHHhhhccccccCCCEEEEE
Confidence 4 444444443 44433 57777654
No 212
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=39.61 E-value=92 Score=27.73 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhh-CCCCceEEEcccCCCCchhHHHH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEE-SPDLDCIVYTGDHDAFPDSLLAR 87 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~-g~~~~v~~~~~~~~~~~~~~~~~ 87 (464)
+|.+++++-+..++ ++-+.+||+|+-.. -..+++..++.++... | .++.+.++..-..++.+.+.
T Consensus 133 tQ~LaDl~Ti~e~~---g~l~glkva~vGD~-----~~~rva~Sl~~~~~~~~G--~~v~~~~P~~~~~~~~~~~~ 198 (306)
T 4ekn_B 133 TQTLLDLYTIMREI---GRIDGIKIAFVGDL-----KYGRTVHSLVYALSLFEN--VEMYFVSPKELRLPKDIIED 198 (306)
T ss_dssp HHHHHHHHHHHHHH---SCSTTCEEEEESCT-----TTCHHHHHHHHHHHTSSS--CEEEEECCGGGCCCHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCcCCCEEEEEcCC-----CCCcHHHHHHHHHHhcCC--CEEEEECCcccccCHHHHHH
Confidence 68899988887665 34567899998431 2257889999999998 8 88888887543333444433
No 213
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=39.49 E-value=1.6e+02 Score=24.41 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=19.7
Q ss_pred HHHHhhhcCCcEEEecccccccch--hhhccCceEEEEee
Q 012436 132 SWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTH 169 (464)
Q Consensus 132 ~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h 169 (464)
..+.++..+||+++.. ++...++ +......+ ++-+|
T Consensus 71 ~~~~l~~~~~Dliv~a-~y~~il~~~~l~~~~~~-~iNiH 108 (209)
T 1meo_A 71 IDLVLEEFSIDIVCLA-GFMRILSGPFVQKWNGK-MLNIH 108 (209)
T ss_dssp HHHHHHHTTCCEEEEE-SCCSCCCHHHHHHTTTS-EEEEE
T ss_pred HHHHHHhcCCCEEEEc-chhhhCCHHHHhhhcCC-EEEEc
Confidence 4466888999988733 3333333 33333323 34557
No 214
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=39.41 E-value=88 Score=28.54 Aligned_cols=61 Identities=10% Similarity=0.075 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSL 84 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~ 84 (464)
+|.+++++-+..++ ++-+.++|+|+-+ |..+++..++.++...| ++|.+.++..-..+..+
T Consensus 158 tQaLaDl~Ti~E~~---g~l~gl~va~vGD------~~~rva~Sl~~~~~~lG--~~v~~~~P~~l~p~~~~ 218 (359)
T 2w37_A 158 TQMLADFMTVKENF---GKLQGLTLTFMGD------GRNNVANSLLVTGAILG--VNIHIVAPKALFPTEET 218 (359)
T ss_dssp HHHHHHHHHHHHHH---SCCTTCEEEEESC------TTSHHHHHHHHHHHHHT--CEEEEECCGGGSCCHHH
T ss_pred cHHHHHHHHHHHHh---CCcCCeEEEEECC------CccchHHHHHHHHHHcC--CEEEEECCccccCCHHH
Confidence 68999999887765 3446789999744 23589999999999999 88888887653333334
No 215
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=39.26 E-value=50 Score=27.28 Aligned_cols=47 Identities=11% Similarity=-0.050 Sum_probs=32.2
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChH--HHHHHH------hCCcEEEeCCCCCcccee
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGIS--VVEYMA------AGAIPIAHNSAGPKMDIV 395 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~--~~Ea~a------~G~PvI~~~~~~~~~~~v 395 (464)
+........||.+|.- ..|+|+- ++|++. .++||+.-+..+.+..++
T Consensus 109 ~Rk~~m~~~sda~Ial--PGG~GTldEl~e~lt~~qlg~~~kPvvlln~~gfw~~l~ 163 (199)
T 3qua_A 109 ERKREMEHRSDAFIAL--PGGIGTLEEFFEAWTAGYLGMHDKPLILLDPFGHYDGLL 163 (199)
T ss_dssp HHHHHHHHHCSEEEEC--SCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTSTTHHHH
T ss_pred HHHHHHHHhcCccEEe--CCCccHHHHHHHHHHHHHhccCCCCEEEEcCCccchHHH
Confidence 3445567789987654 2566655 688887 499999999766655443
No 216
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=39.22 E-value=1.4e+02 Score=23.59 Aligned_cols=82 Identities=10% Similarity=0.093 Sum_probs=50.2
Q ss_pred EEEccCCChhHHHHHHhc-----Cc-EEEEcCCCCCCChHHHHHH-HhCCcEEEeCCCCC-ccc------eecccCCccc
Q 012436 338 VEFYKNLLYRDLVKLLGG-----AV-VGIHSMIDEHFGISVVEYM-AAGAIPIAHNSAGP-KMD------IVLEEDGQQT 403 (464)
Q Consensus 338 v~~~g~~~~~~~~~~l~~-----ad-~~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~~~~-~~~------~v~~~~~~~~ 403 (464)
+.+.-.-...++.+.+.+ +| +.+.|--+.-.+..+.+|+ +.++|+|=-..... ..| ++.+ ...
T Consensus 61 v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~s~---~a~ 137 (167)
T 3kip_A 61 VLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYLSD---KAV 137 (167)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSSGG---GSS
T ss_pred EEEEecCCHHHHHHHHHHhhhcCccEEEEccccceeccHHHHHHHHhcCCCEEEEEcCCccccccchhcccccc---cce
Confidence 444333333444444433 44 5677877778899999988 45899985432211 122 2333 456
Q ss_pred eeecC-CHHHHHHHHHHHHc
Q 012436 404 GFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 404 g~~~~-~~~~la~~i~~l~~ 422 (464)
|.++. -.+...-+++.+++
T Consensus 138 GvI~G~G~~gY~lAl~~l~~ 157 (167)
T 3kip_A 138 AVICGLGVYGYTAAIEYALN 157 (167)
T ss_dssp EEEESSTTHHHHHHHHHHTT
T ss_pred EEEEeCChhhHHHHHHHHHH
Confidence 77777 78888888887765
No 217
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=38.99 E-value=92 Score=28.10 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhh-ccccc-ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhH
Q 012436 13 TAVLASILILASH-VHNAR-RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSL 84 (464)
Q Consensus 13 ~~~~~~~~~~~~~-~~~~~-~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~ 84 (464)
+|.+++++-+..+ + + +-+.+||+|+-+ |..+++..++.++...| .+|.+.++..-..+..+
T Consensus 135 tQ~LaDl~Ti~e~~~---g~~l~gl~ia~vGD------~~~~va~Sl~~~~~~~G--~~v~~~~P~~~~p~~~~ 197 (333)
T 1duv_G 135 TQLLADLLTMQEHLP---GKAFNEMTLVYAGD------ARNNMGNSMLEAAALTG--LDLRLVAPQACWPEAAL 197 (333)
T ss_dssp HHHHHHHHHHHHHST---TCCGGGCEEEEESC------TTSHHHHHHHHHHHHHC--CEEEEECCGGGCCCHHH
T ss_pred hHHHHHHHHHHHHhc---CCCCCCcEEEEECC------CccchHHHHHHHHHHcC--CEEEEECCcccCCCHHH
Confidence 6899999988776 4 3 346689999744 23589999999999999 88888887653333334
No 218
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=38.94 E-value=88 Score=27.15 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcE
Q 012436 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVV 358 (464)
Q Consensus 282 K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~ 358 (464)
...+...+++..+. .. |++.. |++.. .....+.+.+++.|+.+.|.+.|+-....+.+.+..-.+
T Consensus 177 ~~~~~~~~~~~~~l-~~----~~~~a-i~~~d------~~a~g~~~al~~~g~~~di~vvg~d~~p~~~~~i~~g~~ 241 (304)
T 3o1i_D 177 NDKELQRNLVQRVI-DM----GNIDY-IVGSA------VAIEAAISELRSADKTHDIGLVSVYLSHGVYRGLLRNKV 241 (304)
T ss_dssp SCHHHHHHHHHHHH-HH----SCCSE-EEECH------HHHHHHHHHHTTTTCGGGSEEBCSSCCHHHHHHHTTTSC
T ss_pred CcHHHHHHHHHHHH-cC----CCCCE-EEecC------cchHHHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcCcc
Confidence 35566666666666 44 45566 56542 122345556677787778999998766677777765553
No 219
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=38.92 E-value=1.1e+02 Score=22.11 Aligned_cols=107 Identities=10% Similarity=0.046 Sum_probs=62.4
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHH---
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMA--- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a--- 377 (464)
+.++.++.+.+ ...+.++......|. .+... -+.++..+.+.. .|++++-.. .+.-|..+++.+.
T Consensus 3 ~~~ilivdd~~-----~~~~~l~~~l~~~~~--~v~~~--~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 73 (126)
T 1dbw_A 3 DYTVHIVDDEE-----PVRKSLAFMLTMNGF--AVKMH--QSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLK 73 (126)
T ss_dssp CCEEEEEESSH-----HHHHHHHHHHHHTTC--EEEEE--SCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTT
T ss_pred CCEEEEEcCCH-----HHHHHHHHHHHhCCc--EEEEe--CCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 55777877643 445666666666543 24333 244666666654 577665432 3334555666654
Q ss_pred hCCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 AGAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 ~G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|.......... .... |..+++.. +.+++.+++..++.
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~~~---ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 74 INIPSIVITGHGDVPMAVEAMKA---GAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHh---CHHHheeCCCCHHHHHHHHHHHHH
Confidence 3677776432222111 2233 56677764 99999999988875
No 220
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=38.41 E-value=38 Score=30.12 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=26.4
Q ss_pred cccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 28 NARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 28 ~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
+|.+.+.+|++++.+.....|-+.+....+...|.+.| +++.++.
T Consensus 2 ~m~~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~--~~~~~~~ 46 (304)
T 3s40_A 2 HMTKTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAF--PDLHILH 46 (304)
T ss_dssp ---CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHC--SEEEEEE
T ss_pred CCccCCCCEEEEEECcccCCCchHHHHHHHHHHHHHcC--CeEEEEE
Confidence 46666778888765433322234456677888899998 5554543
No 221
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=38.15 E-value=1.2e+02 Score=28.05 Aligned_cols=70 Identities=11% Similarity=-0.037 Sum_probs=42.2
Q ss_pred CCcEEEE-EcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc-------CcEEEEcCCCCCCChHHHH
Q 012436 303 PRPRLQF-VGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG-------AVVGIHSMIDEHFGISVVE 374 (464)
Q Consensus 303 p~~~l~i-~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~-------ad~~v~ps~~e~~~~~~~E 374 (464)
++++++- +.+.. .+..++.++++|++.. .. ..++.++++. .|+++..+....-.-.+.+
T Consensus 38 ~~~~lva~v~d~~-------~~~a~~~a~~~g~~~~-~~-----~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~ 104 (398)
T 3dty_A 38 NTFVLVAGAFDID-------PIRGSAFGEQLGVDSE-RC-----YADYLSMFEQEARRADGIQAVSIATPNGTHYSITKA 104 (398)
T ss_dssp GSEEEEEEECCSS-------HHHHHHHHHHTTCCGG-GB-----CSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHH
T ss_pred CCeEEEEEEeCCC-------HHHHHHHHHHhCCCcc-ee-----eCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHH
Confidence 3667664 33332 1566777777776421 11 1455556654 8987766543333344789
Q ss_pred HHHhCCcEEEe
Q 012436 375 YMAAGAIPIAH 385 (464)
Q Consensus 375 a~a~G~PvI~~ 385 (464)
|+..|++|++=
T Consensus 105 al~aGkhVl~E 115 (398)
T 3dty_A 105 ALEAGLHVVCE 115 (398)
T ss_dssp HHHTTCEEEEC
T ss_pred HHHCCCeEEEe
Confidence 99999999984
No 222
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=38.15 E-value=85 Score=25.27 Aligned_cols=31 Identities=19% Similarity=0.010 Sum_probs=20.1
Q ss_pred hhhcCCcEEEecccccccch--hhhccCceEEE
Q 012436 136 LCKFTPLYYFDTSGYAFTYP--LARIFGCRVIC 166 (464)
Q Consensus 136 l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~ 166 (464)
.++..++++|...+-...+| ++.....|+|-
T Consensus 73 a~~~g~~ViIa~AG~aahLpGvvAa~T~~PVIG 105 (181)
T 4b4k_A 73 ARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIG 105 (181)
T ss_dssp TTTTTCCEEEEEECSSCCHHHHHHTTCCSCEEE
T ss_pred HHhcCceEEEEeccccccchhhHHhcCCCCEEE
Confidence 44556788886666555555 55566777765
No 223
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=38.04 E-value=1.2e+02 Score=27.24 Aligned_cols=35 Identities=9% Similarity=-0.043 Sum_probs=24.1
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|+|+++ ||....=..+++.|.+.| ++|.+++...
T Consensus 10 ~~~IlVt-------GatG~iG~~l~~~L~~~g--~~V~~l~R~~ 44 (346)
T 3i6i_A 10 KGRVLIA-------GATGFIGQFVATASLDAH--RPTYILARPG 44 (346)
T ss_dssp -CCEEEE-------CTTSHHHHHHHHHHHHTT--CCEEEEECSS
T ss_pred CCeEEEE-------CCCcHHHHHHHHHHHHCC--CCEEEEECCC
Confidence 5788876 455555567789999999 5677776653
No 224
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=37.84 E-value=15 Score=30.22 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=26.3
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHH-hhhhCCCCc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKA-IQEESPDLD 69 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~-L~~~g~~~~ 69 (464)
+|||+++..+...+|-.+..+..+++. +.+.|.+++
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~ 38 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGR 38 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEE
Confidence 379999987766555577777888888 888884433
No 225
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=37.82 E-value=1.1e+02 Score=21.87 Aligned_cols=108 Identities=8% Similarity=0.052 Sum_probs=62.0
Q ss_pred cEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CC-CCCChHHHHHHH---
Q 012436 305 PRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-ID-EHFGISVVEYMA--- 377 (464)
Q Consensus 305 ~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~-e~~~~~~~Ea~a--- 377 (464)
.++.++.+.+ ...+.+++..++.|. .+.... +.++..+.+.. .|+++.-. .. +.-|..+++.+.
T Consensus 6 ~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~ 76 (127)
T 2gkg_A 6 KKILIVESDT-----ALSATLRSALEGRGF--TVDETT--DGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDD 76 (127)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHHHTC--EEEEEC--CHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHST
T ss_pred CeEEEEeCCH-----HHHHHHHHHHHhcCc--eEEEec--CHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCc
Confidence 4677776543 445667777766654 344333 33566555543 67776543 23 344566666664
Q ss_pred --hCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 --AGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 --~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|+. ..............|..+++.. +.+++.+.+..++.
T Consensus 77 ~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 77 DLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp TTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 46888887 3322122111111155666664 99999999998876
No 226
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=37.77 E-value=1.8e+02 Score=24.37 Aligned_cols=110 Identities=12% Similarity=0.012 Sum_probs=58.4
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcC-CCCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSM-IDEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps-~~e~~~~~~~Ea~a~-- 378 (464)
..++.++.+.+ ...+.++...+..|. .|... .+.++..+.+. ..|++++-. ..+.-|..+++.+..
T Consensus 23 ~~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~--~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~ 93 (250)
T 3r0j_A 23 EARVLVVDDEA-----NIVELLSVSLKFQGF--EVYTA--TNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADG 93 (250)
T ss_dssp SCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEE--SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTT
T ss_pred CceEEEEECCH-----HHHHHHHHHHHHCCC--EEEEE--CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45666665432 334555555555442 23322 23355555553 357766543 344455666665543
Q ss_pred -CCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 -GAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 -G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|.-...............|..+++.. +++++.++|..++.
T Consensus 94 ~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 94 IDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp CCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 567776433222122222111166777775 99999999988864
No 227
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=37.73 E-value=1.3e+02 Score=22.65 Aligned_cols=106 Identities=16% Similarity=0.075 Sum_probs=60.4
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc---CcEEEEcC-CCCCCChHHHHHHH--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG---AVVGIHSM-IDEHFGISVVEYMA-- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~---ad~~v~ps-~~e~~~~~~~Ea~a-- 377 (464)
..+++|+.+.+ ...+.++...+. + -.|... -+.++..+.+.. .|++++-. ..+.-|..+++.+.
T Consensus 4 ~~~ILivdd~~-----~~~~~l~~~L~~-~--~~v~~~--~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 73 (151)
T 3kcn_A 4 NERILLVDDDY-----SLLNTLKRNLSF-D--FEVTTC--ESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLI 73 (151)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHTT-T--SEEEEE--SSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEeCCH-----HHHHHHHHHhcc-C--ceEEEe--CCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 46778887643 344555555542 2 234333 344677666654 38777643 34455566665544
Q ss_pred -hCCcEEEeCCCCCcc---ceecccCCc-cceeecC--CHHHHHHHHHHHHc
Q 012436 378 -AGAIPIAHNSAGPKM---DIVLEEDGQ-QTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 -~G~PvI~~~~~~~~~---~~v~~~~~~-~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|......... +.... | ..+++.. +.+++.++|..++.
T Consensus 74 ~~~~~ii~~s~~~~~~~~~~~~~~---g~~~~~l~KP~~~~~L~~~i~~~l~ 122 (151)
T 3kcn_A 74 SPNSVYLMLTGNQDLTTAMEAVNE---GQVFRFLNKPCQMSDIKAAINAGIK 122 (151)
T ss_dssp CSSCEEEEEECGGGHHHHHHHHHH---TCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCHHHHHHHHHc---CCeeEEEcCCCCHHHHHHHHHHHHH
Confidence 367777643222211 12233 4 4567664 99999999999987
No 228
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=37.62 E-value=28 Score=31.92 Aligned_cols=69 Identities=7% Similarity=-0.073 Sum_probs=40.7
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC--cEEEEcCCCCCCChHHHHHHHhCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA--VVGIHSMIDEHFGISVVEYMAAGA 380 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a--d~~v~ps~~e~~~~~~~Ea~a~G~ 380 (464)
|+++++-+.+.. .+..++.+++++.. .. ..++.++++.. |+++..+....-.-.+.+|+..|+
T Consensus 29 ~~~~l~av~d~~-------~~~~~~~a~~~~~~---~~-----~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGk 93 (359)
T 3m2t_A 29 QDIRIVAACDSD-------LERARRVHRFISDI---PV-----LDNVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMSKGV 93 (359)
T ss_dssp TTEEEEEEECSS-------HHHHGGGGGTSCSC---CE-----ESSHHHHHHHSCCSEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEEcCC-------HHHHHHHHHhcCCC---cc-----cCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCC
Confidence 578887555432 14555555554321 11 24566667654 887766433322334678999999
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
+|++-.
T Consensus 94 hVl~EK 99 (359)
T 3m2t_A 94 NVFVEK 99 (359)
T ss_dssp EEEECS
T ss_pred eEEEEC
Confidence 999854
No 229
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=37.55 E-value=67 Score=28.37 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+..++ ++-+.+||+|+-+-. ..+++..++.++...| .+|.+.++..
T Consensus 128 tQaLaDl~Ti~e~~---g~l~gl~va~vGDl~-----~~rva~Sl~~~~~~~g--~~v~~~~P~~ 182 (291)
T 3d6n_B 128 SQGLIDFFTIKEHF---GEVKDLRVLYVGDIK-----HSRVFRSGAPLLNMFG--AKIGVCGPKT 182 (291)
T ss_dssp HHHHHHHHHHHHHH---SCCTTCEEEEESCCT-----TCHHHHHHHHHHHHTT--CEEEEESCGG
T ss_pred HHHHHHHHHHHHHh---CCcCCcEEEEECCCC-----CCchHHHHHHHHHHCC--CEEEEECCch
Confidence 68999998887765 345678999963321 3688999999999999 8888888653
No 230
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=37.49 E-value=96 Score=27.62 Aligned_cols=64 Identities=9% Similarity=0.124 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLA 86 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~ 86 (464)
+|.+++++-+..++ ++-+.+||+|+-+. --.+++..++.++...| .+|.+.++..-..+..+.+
T Consensus 137 tQ~LaDl~Ti~e~~---g~l~gl~va~vGD~-----~~~rva~Sl~~~~~~~G--~~v~~~~P~~~~~~~~~~~ 200 (308)
T 1ml4_A 137 TQTLLDLYTIKKEF---GRIDGLKIGLLGDL-----KYGRTVHSLAEALTFYD--VELYLISPELLRMPRHIVE 200 (308)
T ss_dssp HHHHHHHHHHHHHS---SCSSSEEEEEESCT-----TTCHHHHHHHHHGGGSC--EEEEEECCGGGCCCHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCCeEEEEeCCC-----CcCchHHHHHHHHHHCC--CEEEEECCccccCCHHHHH
Confidence 68999999887765 34467899996331 12588999999999998 8888888764333333433
No 231
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=37.31 E-value=1e+02 Score=27.49 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhh-CCCCceEEEcccCC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEE-SPDLDCIVYTGDHD 78 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~-g~~~~v~~~~~~~~ 78 (464)
+|.+++++-+..++ ++-+.+||+|+-+ +--.+++..++.++... | .+|.+.++..-
T Consensus 136 tQaLaDl~Ti~e~~---g~l~gl~va~vGD-----~~~~rva~Sl~~~~~~~~g--~~v~~~~P~~~ 192 (310)
T 3csu_A 136 TQTLLDLFTIQETQ---GRLDNLHVAMVGD-----LKYGRTVHSLTQALAKFDG--NRFYFIAPDAL 192 (310)
T ss_dssp HHHHHHHHHHHHHH---SCSSSCEEEEESC-----TTTCHHHHHHHHHHHTSSS--CEEEEECCGGG
T ss_pred hHHHHHHHHHHHHh---CCcCCcEEEEECC-----CCCCchHHHHHHHHHhCCC--CEEEEECCccc
Confidence 68999998887765 3446689999643 12258899999999999 8 88888887653
No 232
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=37.16 E-value=1.2e+02 Score=22.22 Aligned_cols=107 Identities=10% Similarity=0.032 Sum_probs=61.5
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-C-----CCCChHHHHH
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-D-----EHFGISVVEY 375 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~-----e~~~~~~~Ea 375 (464)
..+++++.+.+ ...+.++...++.|. .|.... +.++..+.+.. .|++++-.. . +.-|..+++.
T Consensus 3 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~ 73 (140)
T 2qr3_A 3 LGTIIIVDDNK-----GVLTAVQLLLKNHFS--KVITLS--SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHE 73 (140)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHTTTSS--EEEEEC--CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHH
T ss_pred CceEEEEeCCH-----HHHHHHHHHHHhCCc--EEEEeC--CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHH
Confidence 46777877543 445667777666543 344333 34677777765 466665432 2 3345555555
Q ss_pred HH---hCCcEEEeCCCCCcc---ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 376 MA---AGAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 376 ~a---~G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
+. ..+|+|......... +.... |..+++.. +.+++.++|..++.
T Consensus 74 l~~~~~~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 74 IKRQYRDLPVVLFTAYADIDLAVRGIKE---GASDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp HHHHCTTCCEEEEEEGGGHHHHHHHHHT---TCCEEEEESCCHHHHHHHHHHHHT
T ss_pred HHhhCcCCCEEEEECCCCHHHHHHHHHc---CchheeeCCCCHHHHHHHHHHHHH
Confidence 53 367777643221111 12233 55666664 99999999999887
No 233
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=37.16 E-value=14 Score=28.67 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=23.5
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLD 69 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~ 69 (464)
|||+++..+. .|-+++++..+++.+.+.|++++
T Consensus 1 mki~iiy~S~--~Gnt~~~a~~i~~~l~~~g~~v~ 33 (147)
T 1f4p_A 1 PKALIVYGST--TGNTEYTAETIARELADAGYEVD 33 (147)
T ss_dssp CEEEEEEECS--SSHHHHHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEEECC--cCHHHHHHHHHHHHHHhcCCeeE
Confidence 6777764333 35788899999999998884433
No 234
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=37.11 E-value=1.2e+02 Score=21.91 Aligned_cols=105 Identities=8% Similarity=0.027 Sum_probs=60.8
Q ss_pred EEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHH-----
Q 012436 306 RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMA----- 377 (464)
Q Consensus 306 ~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a----- 377 (464)
++.++.+.+ ...+.++...++.|. .+... -+.++..+.+.. .|++++-. ..+.-|..+++.+.
T Consensus 4 ~ILivdd~~-----~~~~~l~~~l~~~g~--~v~~~--~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~ 74 (122)
T 3gl9_A 4 KVLLVDDSA-----VLRKIVSFNLKKEGY--EVIEA--ENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEW 74 (122)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHHTTC--EEEEE--SSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTT
T ss_pred eEEEEeCCH-----HHHHHHHHHHHHCCc--EEEEe--CCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccc
Confidence 556665432 445566666666553 23332 234666666654 57776643 34455667777763
Q ss_pred hCCcEEEeCCCCCccce---ecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 AGAIPIAHNSAGPKMDI---VLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 ~G~PvI~~~~~~~~~~~---v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|.....+..... ... |..+++.. +++++.+++.++++
T Consensus 75 ~~~pii~~s~~~~~~~~~~~~~~---Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 75 KRIPVIVLTAKGGEEDESLALSL---GARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp TTSCEEEEESCCSHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCCEEEEecCCchHHHHHHHhc---ChhhhccCCCCHHHHHHHHHHHhc
Confidence 35787764322221222 233 56677764 99999999988874
No 235
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=37.04 E-value=1.3e+02 Score=26.79 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCch----hHHHHHHhhcCcccCCCceeeeeecccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPD----SLLARAVDRFGVELLHPPKVVHLYRRKW 110 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (464)
|||+|+ |...+.....++|.+.| ++|+.+.+.++.... ..........++ +++......
T Consensus 1 mrivf~--------gt~~fa~~~L~~L~~~~--~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gI------pv~~~~~~~- 63 (305)
T 2bln_A 1 MKTVVF--------AYHDMGCLGIEALLAAG--YEISAIFTHTDNPGEKAFYGSVARLAAERGI------PVYAPDNVN- 63 (305)
T ss_dssp CEEEEE--------ECHHHHHHHHHHHHHTT--CEEEEEECCCC------CCCCHHHHHHHHTC------CEECCSCCC-
T ss_pred CEEEEE--------EcCHHHHHHHHHHHHCC--CcEEEEEcCCCCCCCCcCccHHHHHHHHcCC------CEECCCcCC-
Q ss_pred cccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEE
Q 012436 111 IEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVI 165 (464)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v 165 (464)
.....+.++..+||+++ ..++...++ +....+...+
T Consensus 64 ------------------~~~~~~~l~~~~~Dliv-~~~y~~ilp~~il~~~~~g~i 101 (305)
T 2bln_A 64 ------------------HPLWVERIAQLSPDVIF-SFYYRHLIYDEILQLAPAGAF 101 (305)
T ss_dssp ------------------SHHHHHHHHHTCCSEEE-EESCCSCCCHHHHTTCTTCEE
T ss_pred ------------------cHHHHHHHHhcCCCEEE-EeccccccCHHHHhcCcCCEE
No 236
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=36.97 E-value=1.3e+02 Score=25.24 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=23.8
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+++|+++.+-+..- +..+--.+..+.+.|+++.++++|...
T Consensus 1 m~~vL~v~aHPDDe---~l~~ggtia~~~~~G~~v~vv~lT~G~ 41 (227)
T 1uan_A 1 MLDLLVVAPHPDDG---ELGCGGTLARAKAEGLSTGILDLTRGE 41 (227)
T ss_dssp CEEEEEEESSTTHH---HHHHHHHHHHHHHTTCCEEEEEEECCT
T ss_pred CceEEEEEeCCCcH---HHhHHHHHHHHHhCCCcEEEEEEcCCC
Confidence 46788887665432 111111233455789888888888543
No 237
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=36.75 E-value=24 Score=22.05 Aligned_cols=20 Identities=25% Similarity=0.745 Sum_probs=12.7
Q ss_pred CcchHHHHHHHHHHHHHHHH
Q 012436 3 PYGILIWAVITAVLASILIL 22 (464)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (464)
|.++-.|++++.++.-++.|
T Consensus 4 ~~~vp~WiIi~svl~GLLLL 23 (54)
T 2l8s_A 4 PGRVPLWVILLSAFAGLLLL 23 (54)
T ss_dssp CCCCCTHHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHH
Confidence 45566677777776665555
No 238
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=36.72 E-value=19 Score=30.61 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=26.9
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEE
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIV 72 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~ 72 (464)
.|||+++..+....|=....+..+++.+.+.|++++++-
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~d 39 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSD 39 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 389999977766542355666777888888896555443
No 239
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=36.70 E-value=1.5e+02 Score=26.79 Aligned_cols=33 Identities=12% Similarity=-0.040 Sum_probs=19.1
Q ss_pred HHhhhcCCcEEEecccccccchh---hhccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPL---ARIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~---~~~~~~p~v~ 166 (464)
+++...++|+|+........... +...|+++++
T Consensus 81 ~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~ 116 (357)
T 3ec7_A 81 DLINDKDVEVVIITASNEAHADVAVAALNANKYVFC 116 (357)
T ss_dssp HHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEe
Confidence 34666689988755554443332 2256777665
No 240
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=36.68 E-value=29 Score=32.84 Aligned_cols=98 Identities=14% Similarity=0.046 Sum_probs=54.6
Q ss_pred CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCC-cEEEccCCC
Q 012436 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDG-NVEFYKNLL 345 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~-~v~~~g~~~ 345 (464)
.+...++.+|- ..-|...++.++.. . ++++++-+.+... +..++.+++++.+. .+...
T Consensus 81 ~~~irigiIG~--G~~g~~~~~~~l~~----~----~~~~lvav~d~~~-------~~~~~~a~~~g~~~~~~~~~---- 139 (433)
T 1h6d_A 81 DRRFGYAIVGL--GKYALNQILPGFAG----C----QHSRIEALVSGNA-------EKAKIVAAEYGVDPRKIYDY---- 139 (433)
T ss_dssp CCCEEEEEECC--SHHHHHTHHHHTTT----C----SSEEEEEEECSCH-------HHHHHHHHHTTCCGGGEECS----
T ss_pred CCceEEEEECC--cHHHHHHHHHHHhh----C----CCcEEEEEEcCCH-------HHHHHHHHHhCCCccccccc----
Confidence 34577888874 11111123333322 1 4677776655431 44566667766542 12222
Q ss_pred hhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 346 YRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 346 ~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
.++.++++ ..|+++..+......-.+.+++..|++|++-.
T Consensus 140 -~~~~~ll~~~~vD~V~iatp~~~h~~~~~~al~aGk~Vl~EK 181 (433)
T 1h6d_A 140 -SNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEK 181 (433)
T ss_dssp -SSGGGGGGCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred -CCHHHHhcCCCCCEEEEcCCchhHHHHHHHHHHCCCcEEEcC
Confidence 33444565 68988877544444445678999999999853
No 241
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=36.63 E-value=1.8e+02 Score=25.32 Aligned_cols=39 Identities=8% Similarity=-0.074 Sum_probs=26.7
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
+.+|+++.+..... -.......+.+++.+.| +++.++..
T Consensus 2 ~~~Igvi~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~ 40 (313)
T 3m9w_A 2 EVKIGMAIDDLRLE-RWQKDRDIFVKKAESLG--AKVFVQSA 40 (313)
T ss_dssp -CEEEEEESCCSSS-TTHHHHHHHHHHHHHTS--CEEEEEEC
T ss_pred CcEEEEEeCCCCCh-HHHHHHHHHHHHHHHcC--CEEEEECC
Confidence 46899998876544 45566677778888888 66666554
No 242
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=36.12 E-value=1.1e+02 Score=26.28 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCc
Q 012436 288 LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAV 357 (464)
Q Consensus 288 l~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad 357 (464)
...|+++.++.+ |++.++++|+|. +-++.++.+++| |..--++.++..+..+-+
T Consensus 217 esCFerI~~RFG---~k~~yvvIGDG~---------eEe~AAk~~n~P----FwrI~~h~Dl~~l~~al~ 270 (274)
T 3geb_A 217 ESCFERIMQRFG---RKAVYVVIGDGV---------EEEQGAKKHNMP----FWRISCHADLEALRHALE 270 (274)
T ss_dssp HHHHHHHHHHHC---TTSEEEEEESSH---------HHHHHHHHTTCC----EEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCceEEEECCCH---------HHHHHHHHcCCC----eEEeecCccHHHHHHhhc
Confidence 467788888875 699999999995 345566777665 222234467776665543
No 243
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=36.12 E-value=1.1e+02 Score=24.87 Aligned_cols=65 Identities=15% Similarity=0.086 Sum_probs=35.6
Q ss_pred cCcEEEEcC-CCCCCChHHHHHHH-------hCCcEEEeCCCC-Cccc---eecccCCccceeecCCHHHHHHHHHHHHc
Q 012436 355 GAVVGIHSM-IDEHFGISVVEYMA-------AGAIPIAHNSAG-PKMD---IVLEEDGQQTGFLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 355 ~ad~~v~ps-~~e~~~~~~~Ea~a-------~G~PvI~~~~~~-~~~~---~v~~~~~~~~g~~~~~~~~la~~i~~l~~ 422 (464)
..|++|+-. ..+.-|..+++.+. ..+|+|+..... .... .... |..+++....+++.++|.+++.
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~---Ga~~~l~KP~~~L~~~i~~~l~ 195 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQA---GMDAFLDKSLNQLANVIREIES 195 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHH---TCSEEEETTCTTHHHHHHHHC-
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhC---CCCEEEcCcHHHHHHHHHHHHh
Confidence 357766543 23444556665554 457777643222 2111 2233 5566777533389999998886
No 244
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=35.93 E-value=81 Score=28.31 Aligned_cols=94 Identities=10% Similarity=-0.024 Sum_probs=52.7
Q ss_pred CCChhHHHHHHhcCcEEEEcC-CCCCCChHHHHHHHhCCcEEEeCCCCCccce-ecc-cC---CccceeecC-CHHHHHH
Q 012436 343 NLLYRDLVKLLGGAVVGIHSM-IDEHFGISVVEYMAAGAIPIAHNSAGPKMDI-VLE-ED---GQQTGFLAQ-NAEEYAD 415 (464)
Q Consensus 343 ~~~~~~~~~~l~~ad~~v~ps-~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~-v~~-~~---~~~~g~~~~-~~~~la~ 415 (464)
+-|...-..-++.||++|... ..|+|--.++++.. +.++|....+ . .-+ ..+ .. .+..-|+-+ +...+++
T Consensus 82 yeptp~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~g-i-~~~~~~~~~~~~~~DPHvWldp~n~~~~a~ 158 (321)
T 1xvl_A 82 YEPTPSDIVKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTEG-I-EPIPIADGPYTDKPNPHAWMSPRNALVYVE 158 (321)
T ss_dssp CCCCHHHHHHHHTCSEEEECCTTSSTTHHHHHHTSS-SCCEEETTTT-C-CCCBCCSSSSTTSBCCCGGGSHHHHHHHHH
T ss_pred ccCCHHHHHHHhcCCEEEECCCChHHHHHHHHHhcC-CCcEEEccCC-c-ccccccccCCCCCCCCCcCCCHHHHHHHHH
Confidence 333344457789999998765 47776666777665 5666654322 2 111 000 00 011224443 5555666
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHHH
Q 012436 416 AIVKIIS-MPETERLEMAAAARRRA 439 (464)
Q Consensus 416 ~i~~l~~-~~~~~~~~~~~~~~~~~ 439 (464)
.|.+.+. .||+......+|+.++.
T Consensus 159 ~I~~~L~~~DP~~a~~Y~~Na~~~~ 183 (321)
T 1xvl_A 159 NIRQAFVELDPDNAKYYNANAAVYS 183 (321)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcccHHHHHHHHHHHH
Confidence 6655443 38888887888877665
No 245
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=35.85 E-value=1.6e+02 Score=23.32 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=22.9
Q ss_pred HHHhcCcEEEEc--CCCCCCC--hHHHHHHHhCCcEEEeC
Q 012436 351 KLLGGAVVGIHS--MIDEHFG--ISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 351 ~~l~~ad~~v~p--s~~e~~~--~~~~Ea~a~G~PvI~~~ 386 (464)
+.+.+||++|.. .....-| .-+-=|.+.|+||++-.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 457899988763 1122222 22445889999999984
No 246
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=35.83 E-value=1.4e+02 Score=22.50 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=59.4
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHH---
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMA--- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a--- 377 (464)
..+++|+.+.+ ...+.++...++.|. .|.... +.++..+.+.. .|++++-. ..+.-|..+++.+.
T Consensus 14 ~~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 14 RPEILLVDSQE-----VILQRLQQLLSPLPY--TLHFAR--DATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHTTSSC--EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred CceEEEECCCH-----HHHHHHHHHhcccCc--EEEEEC--CHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence 34666666532 344556666655442 233332 33566555544 46766543 34444555655553
Q ss_pred hCCcEEEeCCCCCccc---eecccCCc-cceeecC--CHHHHHHHHHHHHc
Q 012436 378 AGAIPIAHNSAGPKMD---IVLEEDGQ-QTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 ~G~PvI~~~~~~~~~~---~v~~~~~~-~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|+......... .+.. | ..+++.. +.+++..+|..++.
T Consensus 85 ~~~~ii~~s~~~~~~~~~~~~~~---g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 85 PSTTRILLTGDPDLKLIAKAINE---GEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp TTSEEEEECCCCCHHHHHHHHHT---TCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCHHHHHHHHhC---CCcceEEeCCCCHHHHHHHHHHHHH
Confidence 3678876543322122 2223 4 4567764 99999999999886
No 247
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=35.77 E-value=16 Score=29.19 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=23.3
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCce
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDC 70 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v 70 (464)
+|||+++. .+..|.+++++..+++.|.+.|.++++
T Consensus 9 ~~ki~I~Y--~S~tGnT~~~A~~ia~~l~~~g~~v~~ 43 (167)
T 1ykg_A 9 MPGITIIS--ASQTGNARRVAEALRDDLLAAKLNVKL 43 (167)
T ss_dssp ---CEEEE--ECSSSHHHHHHHHHHHHHHHHTCCCEE
T ss_pred CCeEEEEE--ECCchHHHHHHHHHHHHHHHCCCceEE
Confidence 35666653 333378999999999999998855444
No 248
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=35.77 E-value=1.3e+02 Score=22.08 Aligned_cols=104 Identities=8% Similarity=0.015 Sum_probs=53.9
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCCCCCCChHHHHHHH--h-
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDEHFGISVVEYMA--A- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a--~- 378 (464)
..+++++.+.+ ...+.++...++.|. .|.... +.++..+.+.. .|++++| +.-|..+++.+. .
T Consensus 18 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~ 85 (137)
T 2pln_A 18 SMRVLLIEKNS-----VLGGEIEKGLNVKGF--MADVTE--SLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHS 85 (137)
T ss_dssp CSEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--CHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHST
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHHHcCc--EEEEeC--CHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCC
Confidence 45666665432 344555555555443 233222 22555555543 4666632 233445555443 3
Q ss_pred CCcEEEeCCCCCcc---ceecccCCccceeecC---CHHHHHHHHHHHHc
Q 012436 379 GAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ---NAEEYADAIVKIIS 422 (464)
Q Consensus 379 G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~---~~~~la~~i~~l~~ 422 (464)
.+|+|......... +.... |..+++.. +.+++.++|..++.
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQ---GADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHT---TCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred CccEEEEeCCCCHHHHHHHHHc---CCceeeeCCCCCHHHHHHHHHHHHh
Confidence 67777643222111 12223 55666653 78899999988876
No 249
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=35.77 E-value=1e+02 Score=27.82 Aligned_cols=80 Identities=9% Similarity=-0.046 Sum_probs=49.8
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++..+.|+|-. .. .+...+....... ++++.++|......+....+.+++.+++.|. .+.+. +
T Consensus 154 ~gl~va~vGD~-~~----~va~Sl~~~~~~~-----G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~--~v~~~-----~ 216 (335)
T 1dxh_A 154 HDISYAYLGDA-RN----NMGNSLLLIGAKL-----GMDVRIAAPKALWPHDEFVAQCKKFAEESGA--KLTLT-----E 216 (335)
T ss_dssp GGCEEEEESCC-SS----HHHHHHHHHHHHT-----TCEEEEECCGGGSCCHHHHHHHHHHHHHHTC--EEEEE-----S
T ss_pred CCeEEEEecCC-cc----chHHHHHHHHHHc-----CCEEEEECCcccCCCHHHHHHHHHHHHHcCC--eEEEE-----e
Confidence 34789999974 12 3344444444443 7899999974333333455556666666652 35444 4
Q ss_pred HHHHHHhcCcEEEEcCC
Q 012436 348 DLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~ 364 (464)
++.+.+..||++....|
T Consensus 217 d~~eav~~aDvvytd~w 233 (335)
T 1dxh_A 217 DPKEAVKGVDFVHTDVW 233 (335)
T ss_dssp CHHHHTTTCSEEEECCC
T ss_pred CHHHHhCCCCEEEeCCc
Confidence 56778999999887655
No 250
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=35.52 E-value=1.3e+02 Score=22.13 Aligned_cols=109 Identities=14% Similarity=-0.012 Sum_probs=57.0
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHH---
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMA--- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a--- 377 (464)
..+++++.+.+ ...+.+++..++. -.|.... +.++..+.+.. .|++++-. ..+.-|..+++.+.
T Consensus 3 ~~~iLivdd~~-----~~~~~l~~~l~~~---~~v~~~~--~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 72 (140)
T 3n53_A 3 LKKILIIDQQD-----FSRIELKNFLDSE---YLVIESK--NEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSK 72 (140)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHTTT---SEEEEES--SHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTST
T ss_pred CCEEEEEeCCH-----HHHHHHHHHHHhc---ceEEEeC--CHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCc
Confidence 35677776542 3445566665543 2333333 34666666643 57776643 34444566666665
Q ss_pred --hCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 --AGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 --~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.++|+|........+........|..+++.. +.+++.++|..++.
T Consensus 73 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 73 GLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp TCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 4678776432222122211111155677764 99999999999886
No 251
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=35.41 E-value=89 Score=27.86 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+.-++ ++-+.+||+|+-. ..+++..++.++...| .++.+.++..
T Consensus 136 tQaLaDl~Ti~e~~---g~l~glkva~vGD-------~~~va~Sl~~~~~~~G--~~v~~~~P~~ 188 (309)
T 4f2g_A 136 CQVLADIFTYYEHR---GPIRGKTVAWVGD-------ANNMLYTWIQAARILD--FKLQLSTPPG 188 (309)
T ss_dssp HHHHHHHHHHHHHH---SCCTTCEEEEESC-------CCHHHHHHHHHHHHHT--CEEEEECCGG
T ss_pred HHHHHHHHHHHHHh---CCCCCCEEEEECC-------CcchHHHHHHHHHHcC--CEEEEECCcc
Confidence 68999998876665 3456789999844 2578999999999999 8888888754
No 252
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=35.30 E-value=1.2e+02 Score=21.75 Aligned_cols=108 Identities=15% Similarity=0.145 Sum_probs=62.2
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a~-- 378 (464)
..++.++.+.+ ...+.++...++.|.. .+..... ..+..+.+.. .|++++-.. .+.-|..+++.+..
T Consensus 4 ~~~ilivdd~~-----~~~~~l~~~l~~~~~~-~v~~~~~--~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~ 75 (128)
T 1jbe_A 4 ELKFLVVDDFS-----TMRRIVRNLLKELGFN-NVEEAED--GVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXX 75 (128)
T ss_dssp TCCEEEECSCH-----HHHHHHHHHHHHTTCC-CEEEESS--HHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--
T ss_pred ccEEEEECCCH-----HHHHHHHHHHHHcCCc-EEEeeCC--HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 56777777543 4456677777665542 3433333 3566666654 577765432 34456667777653
Q ss_pred ---CCcEEEeCCCCCcc---ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|......... +.... |..+++.. +.+++.+++.+++.
T Consensus 76 ~~~~~~ii~~s~~~~~~~~~~~~~~---ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 76 AMSALPVLMVTAEAKKENIIAAAQA---GASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp CCTTCCEEEEESSCCHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEecCccHHHHHHHHHh---CcCceeecCCCHHHHHHHHHHHHH
Confidence 56777543222211 12233 55677764 99999999987764
No 253
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=35.30 E-value=1.7e+02 Score=25.84 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=23.4
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
.+|+|++. ||..-.=..+++.|.+.| ++|+++....
T Consensus 4 ~~~~vlVT-------GatG~iG~~l~~~L~~~G--~~V~~~~r~~ 39 (341)
T 3enk_A 4 TKGTILVT-------GGAGYIGSHTAVELLAHG--YDVVIADNLV 39 (341)
T ss_dssp SSCEEEEE-------TTTSHHHHHHHHHHHHTT--CEEEEECCCS
T ss_pred CCcEEEEe-------cCCcHHHHHHHHHHHHCC--CcEEEEecCC
Confidence 45677764 344444456689999999 6666666543
No 254
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=35.27 E-value=21 Score=30.55 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=27.2
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhh-CCCCceEEEc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEE-SPDLDCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~-g~~~~v~~~~ 74 (464)
|||+++..+....|-..+.+..+++.+.+. | ++|.++.
T Consensus 2 mkIliI~gS~r~~s~T~~la~~i~~~l~~~~g--~~v~~~d 40 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTLEYTKRLSSIISSRNN--VDISFRT 40 (242)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHSC--CEEEEEC
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHHHhcC--CeEEEEE
Confidence 789999877665545677778888888887 8 4544443
No 255
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=35.18 E-value=1.3e+02 Score=27.27 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc-CcEEEEcCCCCCCChHHHHHHH-hCCcEEEeCC
Q 012436 321 RLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG-AVVGIHSMIDEHFGISVVEYMA-AGAIPIAHNS 387 (464)
Q Consensus 321 ~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~-ad~~v~ps~~e~~~~~~~Ea~a-~G~PvI~~~~ 387 (464)
....|.+.+++.|+. .+.-..+.+.+.-+-.- +|++=.+|. +-.-..++++++ .|+|||.+.-
T Consensus 79 ~~~~L~~~~~~~Gi~---~~st~fD~~svd~l~~~~v~~~KI~S~-~~~N~pLL~~va~~gKPviLstG 143 (350)
T 3g8r_A 79 QMQKLVAEMKANGFK---AICTPFDEESVDLIEAHGIEIIKIASC-SFTDWPLLERIARSDKPVVASTA 143 (350)
T ss_dssp HHHHHHHHHHHTTCE---EEEEECSHHHHHHHHHTTCCEEEECSS-STTCHHHHHHHHTSCSCEEEECT
T ss_pred HHHHHHHHHHHcCCc---EEeccCCHHHHHHHHHcCCCEEEECcc-cccCHHHHHHHHhhCCcEEEECC
Confidence 346677777776653 23333344444333333 566655643 444555665554 5777777653
No 256
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=35.09 E-value=73 Score=28.05 Aligned_cols=100 Identities=11% Similarity=0.003 Sum_probs=57.9
Q ss_pred CCcEEEccC-CChh--HHHHHHhcCcEEEEc-CCCCCCCh-HHHHHHHhCCcEEEeCCCCCcccee-cccCCccce-eec
Q 012436 335 DGNVEFYKN-LLYR--DLVKLLGGAVVGIHS-MIDEHFGI-SVVEYMAAGAIPIAHNSAGPKMDIV-LEEDGQQTG-FLA 407 (464)
Q Consensus 335 ~~~v~~~g~-~~~~--~~~~~l~~ad~~v~p-s~~e~~~~-~~~Ea~a~G~PvI~~~~~~~~~~~v-~~~~~~~~g-~~~ 407 (464)
.++|.|.|. +|.+ +..+.+..||++|.- +...-+|. .+.++...|.|+|.-+.... ..+- .+ ...- .+.
T Consensus 174 rP~IV~FGE~lp~~~~~~~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~-~~~~~~~---~~~d~~~~ 249 (285)
T 3glr_A 174 KPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLV-GPLAWHP---RSRDVAQL 249 (285)
T ss_dssp EEEECCTTSBCCGGGGGHHHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCC-THHHHSC---CTTEEEEE
T ss_pred CCcEEEeCCcCCHHHHHHHHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCc-CccccCC---CCccEEEc
Confidence 356777776 3442 334567889987653 32222232 23455566788887664432 1110 11 1222 333
Q ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012436 408 QNAEEYADAIVKIISMPETERLEMAAAARRRA 439 (464)
Q Consensus 408 ~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 439 (464)
.+.++....+.+.+. -.++.+.+-+...+.+
T Consensus 250 g~~~~~~~~L~~~lg-w~~el~~~~~~~~~~~ 280 (285)
T 3glr_A 250 GDVVHGVESLVELLG-WTEEMRDLVQRETGKL 280 (285)
T ss_dssp SCHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhC-CHHHHHHHHHhhHhhh
Confidence 588888888888888 8888888777666543
No 257
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=35.02 E-value=1.3e+02 Score=21.72 Aligned_cols=107 Identities=10% Similarity=0.081 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a~-- 378 (464)
..+++++.+.+ ...+.+++..++.|. .|.... +.++..+.+.. .|++++-. ..+.-|..+++.+..
T Consensus 3 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 73 (127)
T 3i42_A 3 LQQALIVEDYQ-----AAAETFKELLEMLGF--QADYVM--SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALP 73 (127)
T ss_dssp CEEEEEECSCH-----HHHHHHHHHHHHTTE--EEEEES--SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSC
T ss_pred cceEEEEcCCH-----HHHHHHHHHHHHcCC--CEEEEC--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 45677777543 455677777777653 344333 44677777654 57766543 345556667776653
Q ss_pred ---CCcEEEeCCCCCcc--ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAHNSAGPKM--DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~~~~~~~~--~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|......... ..... |..+++.. +++++.+++.....
T Consensus 74 ~~~~~~ii~~s~~~~~~~~~~~~~---g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 74 MEKTSKFVAVSGFAKNDLGKEACE---LFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp CSSCCEEEEEECC-CTTCCHHHHH---HCSEEEESSCCHHHHHHHHHHHC-
T ss_pred ccCCCCEEEEECCcchhHHHHHHH---hhHHheeCCCCHHHHHHHHHHhhc
Confidence 46777643222211 22233 45566664 99999999988765
No 258
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=34.92 E-value=1.7e+02 Score=25.02 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=25.7
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCC
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHD 78 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~ 78 (464)
|||++.....- ...-+..|+++|.+.| +|++..+..+
T Consensus 1 M~ILlTNDDGi----~apGi~aL~~~l~~~g---~V~VVAP~~~ 37 (244)
T 2e6c_A 1 MRILVTNDDGI----YSPGLWALAEAASQFG---EVFVAAPDTE 37 (244)
T ss_dssp CEEEEECSSCT----TCHHHHHHHHHHTTTS---EEEEEEECSS
T ss_pred CeEEEEcCCCC----CcHhHHHHHHHHHhCC---CEEEEecCCC
Confidence 78888766532 3345778889998876 5777777653
No 259
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=34.91 E-value=1.7e+02 Score=23.24 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc----Cc-EEEEcCCCCCCChHHHHHHH-hCCcEEEe---CCCCCccc
Q 012436 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG----AV-VGIHSMIDEHFGISVVEYMA-AGAIPIAH---NSAGPKMD 393 (464)
Q Consensus 323 ~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad-~~v~ps~~e~~~~~~~Ea~a-~G~PvI~~---~~~~~~~~ 393 (464)
+.+++.+.++|+ .+.+.-.-...++.+.+.+ +| +.+.|--+.-.+.++.+|++ .++|+|=- ++-.- ++
T Consensus 60 ~~l~~~a~~~G~--~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaR-E~ 136 (172)
T 3n8k_A 60 ALIEREAAELGL--KAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAR-EE 136 (172)
T ss_dssp HHHHHHHHHTTC--EEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHTTCCSCEEEEESSCTTSS-CG
T ss_pred HHHHHHHHHcCC--EEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHhCCCCEEEEEcCCchhc-cc
Confidence 444455555543 2444443344455554443 45 67778778888999999984 58899853 33321 22
Q ss_pred -----eecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 394 -----IVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 394 -----~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
++.+ ...|.++. -.+...-+++.+++
T Consensus 137 FRhhS~is~---~a~GvI~G~G~~gY~lAl~al~~ 168 (172)
T 3n8k_A 137 FRRHSYLSP---IATGVIVGLGIQGYLLALRYLAE 168 (172)
T ss_dssp GGGCCSSGG---GSSEEEESSTTHHHHHHHHHHHH
T ss_pred ccccccccc---cceEEEEeCChHHHHHHHHHHHH
Confidence 2233 34677776 77777777766654
No 260
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=34.82 E-value=61 Score=26.50 Aligned_cols=47 Identities=9% Similarity=-0.058 Sum_probs=31.9
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChH--HHHHHH------hCCcEEEeCCCCCcccee
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGIS--VVEYMA------AGAIPIAHNSAGPKMDIV 395 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~--~~Ea~a------~G~PvI~~~~~~~~~~~v 395 (464)
+.....+..||.+|.- ..|+|.- ++|++. .++||+.-+..+.+..++
T Consensus 100 ~Rk~~m~~~sda~Ial--PGG~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~ 154 (189)
T 3sbx_A 100 ERKQVMEDRANAFITL--PGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLR 154 (189)
T ss_dssp HHHHHHHHHCSEEEEC--SCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHH
T ss_pred HHHHHHHHHCCEEEEe--CCCcchHHHHHHHHHHHHhcccCCCEEEecCCccchHHH
Confidence 3445667789987654 2466644 678875 589999999866655443
No 261
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=34.74 E-value=1.5e+02 Score=22.39 Aligned_cols=107 Identities=20% Similarity=0.159 Sum_probs=62.8
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHH---
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMA--- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a--- 377 (464)
..+++++.+.+ ...+.+....++.|. .|.... +.++..+.+.. .|++++-. ..+.-|..+++.+.
T Consensus 7 ~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 7 NYTVMLVDDEQ-----PILNSLKRLIKRLGC--NIITFT--SPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSY 77 (154)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHTTTC--EEEEES--CHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred CCeEEEEcCCH-----HHHHHHHHHHHHcCC--eEEEeC--CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 56788887643 445667777766553 344333 34777777764 57776643 23344555655553
Q ss_pred hCCcEEEeCCCCCccc---eecccCCc-cceeecC--CHHHHHHHHHHHHc
Q 012436 378 AGAIPIAHNSAGPKMD---IVLEEDGQ-QTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 ~G~PvI~~~~~~~~~~---~v~~~~~~-~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|.......... .+.. | ..+++.. +.+++.++|..++.
T Consensus 78 ~~~~ii~ls~~~~~~~~~~~~~~---g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 78 PDIERVVISGYADAQATIDAVNR---GKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp TTSEEEEEECGGGHHHHHHHHHT---TCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCCHHHHHHHHhc---cchheeeeCCCCHHHHHHHHHHHHH
Confidence 3678776432222111 1222 3 4566664 99999999998886
No 262
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=34.69 E-value=1.2e+02 Score=26.03 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=26.8
Q ss_pred cccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCc-eEEEcc
Q 012436 28 NARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLD-CIVYTG 75 (464)
Q Consensus 28 ~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~-v~~~~~ 75 (464)
+.++++..+|+++.+..... -....+..+.+++.+.| ++ +.++..
T Consensus 4 ~L~~~~~~~Igvi~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~~ 49 (277)
T 3hs3_A 4 TLYQKKSKMIGIIIPDLNNR-FYAQIIDGIQEVIQKEG--YTALISFST 49 (277)
T ss_dssp ----CCCCEEEEEESCTTSH-HHHHHHHHHHHHHHHTT--CEEEEEECS
T ss_pred hhhcCCCCEEEEEeCCCCCh-hHHHHHHHHHHHHHHCC--CCEEEEEeC
Confidence 44566778999998876433 24445556667777778 66 555443
No 263
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=34.59 E-value=1.1e+02 Score=27.94 Aligned_cols=33 Identities=18% Similarity=-0.028 Sum_probs=19.2
Q ss_pred HHhhhcCCcEEEecccccccchh---hhccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPL---ARIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~---~~~~~~p~v~ 166 (464)
+++.+.++|+|+..+.......+ +-..|+++++
T Consensus 82 ~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~ 117 (361)
T 3u3x_A 82 EILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLV 117 (361)
T ss_dssp HHHTCTTCCEEEECCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCeEEE
Confidence 44666789988755543333332 2256777765
No 264
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=34.50 E-value=88 Score=28.25 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=25.5
Q ss_pred hHHHHHHhcCcEEEE--cCCCCCCChH---HHHHHHhCCcEEEeCCC
Q 012436 347 RDLVKLLGGAVVGIH--SMIDEHFGIS---VVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~--ps~~e~~~~~---~~Ea~a~G~PvI~~~~~ 388 (464)
.++.+++++||++.+ |...++.++. .++.|--|.-+|-+.-|
T Consensus 186 ~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG 232 (334)
T 3kb6_A 186 TSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARG 232 (334)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred cCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCcc
Confidence 356778999998754 4455555544 56666556544444444
No 265
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=34.31 E-value=50 Score=24.17 Aligned_cols=78 Identities=10% Similarity=-0.009 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHH--hCCc
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMA--AGAI 381 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a--~G~P 381 (464)
..++++++.+-. ...-..+.+++.+++.|++ +.+.. .+..+..+.+...|++++..- -.+-..=++..+ .|+|
T Consensus 6 ~mkIlL~C~aGm-STsllv~km~~~a~~~gi~--v~i~a-~~~~~~~~~~~~~DvvLLgPQ-V~y~~~~ik~~~~~~~ip 80 (108)
T 3nbm_A 6 ELKVLVLCAGSG-TSAQLANAINEGANLTEVR--VIANS-GAYGAHYDIMGVYDLIILAPQ-VRSYYREMKVDAERLGIQ 80 (108)
T ss_dssp CEEEEEEESSSS-HHHHHHHHHHHHHHHHTCS--EEEEE-EETTSCTTTGGGCSEEEECGG-GGGGHHHHHHHHTTTTCE
T ss_pred CceEEEECCCCC-CHHHHHHHHHHHHHHCCCc--eEEEE-cchHHHHhhccCCCEEEEChH-HHHHHHHHHHHhhhcCCc
Confidence 455555554322 2334667889999998875 44432 222456667788998876521 122233344444 3899
Q ss_pred EEEeC
Q 012436 382 PIAHN 386 (464)
Q Consensus 382 vI~~~ 386 (464)
|.+.+
T Consensus 81 V~vI~ 85 (108)
T 3nbm_A 81 IVATR 85 (108)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 98866
No 266
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=34.29 E-value=38 Score=25.19 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=26.3
Q ss_pred eEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEE
Q 012436 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (464)
Q Consensus 36 kI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~ 73 (464)
|++|+....+.+.-..+-..+++.++...++++.|..+
T Consensus 3 k~~~vv~~~P~g~~~~~~al~~a~a~~a~~~~v~vff~ 40 (119)
T 2d1p_B 3 RIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFI 40 (119)
T ss_dssp CEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEEC
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 68888776666533447778899999888866654443
No 267
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=34.03 E-value=1.7e+02 Score=23.04 Aligned_cols=70 Identities=10% Similarity=-0.069 Sum_probs=37.6
Q ss_pred HHHhcCcEEEEcCCCCCCChHHHH---HHHhCCcEEEeCCCC---CccceecccCC--ccceeecCCHHHHHHHHHHHHc
Q 012436 351 KLLGGAVVGIHSMIDEHFGISVVE---YMAAGAIPIAHNSAG---PKMDIVLEEDG--QQTGFLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 351 ~~l~~ad~~v~ps~~e~~~~~~~E---a~a~G~PvI~~~~~~---~~~~~v~~~~~--~~~g~~~~~~~~la~~i~~l~~ 422 (464)
+.+..||++|.--. +.-..+.+| |.+.|+||++-.... ...-++..... ...-+.+ |.+++.+.|.+++.
T Consensus 73 ~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~~g~~~~~~~~~~~y-~~~el~~~l~~~~~ 150 (165)
T 2khz_A 73 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDY-AEGEVETMLDRYFE 150 (165)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHHHHTCCSSSEEEEEC-CTTTHHHHHHHHHH
T ss_pred HHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhhcccCccceeEEEec-CHHHHHHHHHHHHH
Confidence 67999998876432 333334444 778899999963222 10111111000 0011223 77777777777664
No 268
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=33.95 E-value=1.5e+02 Score=26.53 Aligned_cols=33 Identities=18% Similarity=0.016 Sum_probs=18.8
Q ss_pred HHhhhcCCcEEEecccccccchh---hhccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPL---ARIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~---~~~~~~p~v~ 166 (464)
+++.+.++|+|+........... +...|+++++
T Consensus 59 ~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~ 94 (344)
T 3euw_A 59 EVFARDDIDGIVIGSPTSTHVDLITRAVERGIPALC 94 (344)
T ss_dssp HHTTCSCCCEEEECSCGGGHHHHHHHHHHTTCCEEE
T ss_pred HHhcCCCCCEEEEeCCchhhHHHHHHHHHcCCcEEE
Confidence 34666789988755554443332 2256666655
No 269
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=33.91 E-value=1.3e+02 Score=26.92 Aligned_cols=33 Identities=18% Similarity=-0.084 Sum_probs=18.9
Q ss_pred HHhhhcCCcEEEecccccccchh---hhccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPL---ARIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~---~~~~~~p~v~ 166 (464)
+++...++|+|+........... +...|+++++
T Consensus 61 ~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~ 96 (330)
T 3e9m_A 61 ELCKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLL 96 (330)
T ss_dssp HHHHCTTCSEEEECCCGGGHHHHHHHHHHTTCCEEE
T ss_pred HHhcCCCCCEEEEcCCCHHHHHHHHHHHHCCCeEEE
Confidence 34666689988755554443332 2256776655
No 270
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=33.84 E-value=1.6e+02 Score=26.43 Aligned_cols=95 Identities=12% Similarity=-0.086 Sum_probs=54.2
Q ss_pred CCCcEEEEEecc-CCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 267 TEYPAIISVAQF-RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 267 ~~~~~i~~~G~~-~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
.++..++.+|-= ... ...+.++.. .. |+++++-+.+.. .+..++.+++++.. ..
T Consensus 16 ~~~irvgiIG~G~~~g---~~~~~~l~~---~~----~~~~lvav~d~~-------~~~~~~~a~~~~~~---~~----- 70 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAAR---ELHLPALKN---LS----HLFEITAVTSRT-------RSHAEEFAKMVGNP---AV----- 70 (340)
T ss_dssp CCCEEEEEECCSHHHH---HTHHHHHHT---TT----TTEEEEEEECSS-------HHHHHHHHHHHSSC---EE-----
T ss_pred CCceeEEEEecCHHHH---HHHHHHHHh---CC----CceEEEEEEcCC-------HHHHHHHHHHhCCC---cc-----
Confidence 455788888841 011 112333322 11 367776666543 14566667777642 11
Q ss_pred hhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 346 YRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 346 ~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
..++.++++ ..|+++..+....-.-.+.+|+..|++|++-.
T Consensus 71 ~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EK 113 (340)
T 1zh8_A 71 FDSYEELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICEK 113 (340)
T ss_dssp ESCHHHHHHSSCCSEEEECCCGGGHHHHHHHHHHTTCEEEEES
T ss_pred cCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeC
Confidence 145666676 47888776543333334678999999999854
No 271
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=33.69 E-value=2.3e+02 Score=25.24 Aligned_cols=91 Identities=12% Similarity=0.037 Sum_probs=46.0
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCcc----HHHHHHHHHHHHhcCCCCcEEEccCC
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSD----EERLQSLKDKSIELKVDGNVEFYKNL 344 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~----~~~~~~l~~~~~~~~l~~~v~~~g~~ 344 (464)
+..|+|+|+ .+..+..++.|.+. +.+++.+-..+++.. ......+++.+.++|++ +.-....
T Consensus 7 ~mrivf~Gt------~~fa~~~L~~L~~~------~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIp--v~~~~~~ 72 (318)
T 3q0i_A 7 SLRIVFAGT------PDFAARHLAALLSS------EHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVP--VYQPENF 72 (318)
T ss_dssp CCEEEEECC------SHHHHHHHHHHHTS------SSEEEEEECCCC---------CCCHHHHHHHHTTCC--EECCSCS
T ss_pred CCEEEEEec------CHHHHHHHHHHHHC------CCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCC--EEccCcC
Confidence 467899985 35556666666553 233333322222100 00013567788888876 3323334
Q ss_pred ChhHHHHHHhc--CcEEEEcCCCCCCChHHH
Q 012436 345 LYRDLVKLLGG--AVVGIHSMIDEHFGISVV 373 (464)
Q Consensus 345 ~~~~~~~~l~~--ad~~v~ps~~e~~~~~~~ 373 (464)
..+++.+.++. .|++++..+..-.+-.++
T Consensus 73 ~~~~~~~~l~~~~~Dliv~~~y~~ilp~~~l 103 (318)
T 3q0i_A 73 KSDESKQQLAALNADLMVVVAYGLLLPKVVL 103 (318)
T ss_dssp CSHHHHHHHHTTCCSEEEESSCCSCCCHHHH
T ss_pred CCHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 44566666654 577776644333333333
No 272
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=33.35 E-value=39 Score=27.89 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=27.3
Q ss_pred ceEEEecCCCCC--CCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 35 TSVAFFHPNTND--GGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~--~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
|||+++..+... +|=....+..+++.+.+.|.+++|.++.
T Consensus 2 ~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~d 43 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILD 43 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 689998877764 4345556677888898887445555543
No 273
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=33.33 E-value=90 Score=27.74 Aligned_cols=54 Identities=9% Similarity=0.069 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
+|.+++++-+..++ ++-+.+||+|+-. +.-.+++..++.++...| .+|.+.++.
T Consensus 129 tQaLaDl~Ti~e~~---g~l~glkva~vGD-----~~~~rva~Sl~~~~~~~G--~~v~~~~P~ 182 (304)
T 3r7f_A 129 TQSLLDLMTIYEEF---NTFKGLTVSIHGD-----IKHSRVARSNAEVLTRLG--ARVLFSGPS 182 (304)
T ss_dssp HHHHHHHHHHHHHH---SCCTTCEEEEESC-----CTTCHHHHHHHHHHHHTT--CEEEEESCG
T ss_pred HHHHHHHHHHHHHh---CCCCCCEEEEEcC-----CCCcchHHHHHHHHHHcC--CEEEEECCC
Confidence 68999998887665 3456789999843 123588899999999999 888887764
No 274
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=33.30 E-value=49 Score=31.17 Aligned_cols=71 Identities=10% Similarity=-0.020 Sum_probs=45.6
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChH--HHHHHH---------hCCcEEEeC---CCCCcccee-------cccCCccce--
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGIS--VVEYMA---------AGAIPIAHN---SAGPKMDIV-------LEEDGQQTG-- 404 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~--~~Ea~a---------~G~PvI~~~---~~~~~~~~v-------~~~~~~~~g-- 404 (464)
.....+..||.+|.- ..|+|+- ++|++. .++|||..+ ..+.+..+. .+. ....
T Consensus 238 RK~~mv~~SDAfIaL--PGG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~Ll~~l~~~l~~~--~~~~~i 313 (460)
T 3bq9_A 238 RLEAFVRCAHGIVIF--PGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDE--ARQLYK 313 (460)
T ss_dssp HHHHHHHHCSEEEEC--SCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHTCTT--GGGGCE
T ss_pred HHHHHHHhCCEEEEc--CCCcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhHHHHHHHHHhcch--hhcCcE
Confidence 445566789987653 3677765 688888 489999986 344433322 110 1122
Q ss_pred eecCCHHHHHHHHHHHHc
Q 012436 405 FLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 405 ~~~~~~~~la~~i~~l~~ 422 (464)
++++|++++.+.+.+.+.
T Consensus 314 iv~ddpeEal~~l~~~~~ 331 (460)
T 3bq9_A 314 IIIDDPAAVAQHMHAGMA 331 (460)
T ss_dssp EEESCHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHH
Confidence 345799999999988776
No 275
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=33.24 E-value=1.8e+02 Score=26.20 Aligned_cols=79 Identities=8% Similarity=-0.003 Sum_probs=46.0
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCC--ccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK--SDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~--~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
+..+.|+|-.. ..=..-++.++..+ ++++.++|..... .+++..+..++.+++.+....+.+.
T Consensus 161 gl~va~vGD~~-~~va~Sl~~~~~~~---------G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~----- 225 (328)
T 3grf_A 161 GIKFAYCGDSM-NNVTYDLMRGCALL---------GMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIF----- 225 (328)
T ss_dssp GCCEEEESCCS-SHHHHHHHHHHHHH---------TCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEE-----
T ss_pred CcEEEEeCCCC-cchHHHHHHHHHHc---------CCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEE-----
Confidence 46799999752 11123344444444 7899999864332 3334555566655551112234443
Q ss_pred hHHHHHHhcCcEEEEc
Q 012436 347 RDLVKLLGGAVVGIHS 362 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~p 362 (464)
.++.+.+..||++...
T Consensus 226 ~d~~eav~~aDvvytd 241 (328)
T 3grf_A 226 HDCKKGCEGVDVVYTD 241 (328)
T ss_dssp SSHHHHHTTCSEEEEC
T ss_pred cCHHHHhcCCCEEEec
Confidence 4566789999998765
No 276
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=33.16 E-value=1.3e+02 Score=25.86 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=26.2
Q ss_pred cccccccceEEEecCC-----CCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 28 NARRNRTTSVAFFHPN-----TNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 28 ~~~~~~~mkI~~~~~~-----~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
+.++++..+|+++.+. .... -...++..+.+++.+.| +++.++.
T Consensus 2 ~L~~~~~~~Igvi~~~~~~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~ 50 (292)
T 3k4h_A 2 SLANQTTKTLGLVMPSSASKAFQNP-FFPEVIRGISSFAHVEG--YALYMST 50 (292)
T ss_dssp -----CCCEEEEECSSCHHHHTTST-HHHHHHHHHHHHHHHTT--CEEEECC
T ss_pred CcccCCCCEEEEEecCCccccccCH-HHHHHHHHHHHHHHHcC--CEEEEEe
Confidence 3456677899999887 4333 34455666667777788 5665544
No 277
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=33.09 E-value=1.4e+02 Score=21.76 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=64.7
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc---CcEEEEcC-CCCCCChHHHHHHHh-
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG---AVVGIHSM-IDEHFGISVVEYMAA- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~---ad~~v~ps-~~e~~~~~~~Ea~a~- 378 (464)
..+++++.+.+ ...+.+++..++.|. .+... .+.++....+.. .|++++-. ..+.-|..+++.+..
T Consensus 7 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~--~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 77 (136)
T 3hdv_A 7 RPLVLVVDDNA-----VNREALILYLKSRGI--DAVGA--DGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRAS 77 (136)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHTTC--CEEEE--SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTS
T ss_pred CCeEEEECCCH-----HHHHHHHHHHHHcCc--eEEEe--CCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhc
Confidence 56788887643 455677777777654 34433 333566555543 56666643 344556667776653
Q ss_pred ---CCcEEEeCCCCCcc---ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|......... +.... |..+++.. +.+++.++|.++..
T Consensus 78 ~~~~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~KP~~~~~l~~~i~~~~~ 126 (136)
T 3hdv_A 78 ERAALSIIVVSGDTDVEEAVDVMHL---GVVDFLLKPVDLGKLLELVNKELK 126 (136)
T ss_dssp TTTTCEEEEEESSCCHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEeCCCChHHHHHHHhC---CcceEEeCCCCHHHHHHHHHHHhc
Confidence 46777643222211 22233 56667764 99999999999887
No 278
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=33.04 E-value=1.4e+02 Score=26.82 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=42.0
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGA 380 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~ 380 (464)
++++++.+.+... +..++.+++++.. ... .++.++++ .+|+++..+......-.+.+++..|+
T Consensus 32 ~~~~~vav~d~~~-------~~~~~~a~~~g~~---~~~-----~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~G~ 96 (346)
T 3cea_A 32 QGVKLVAACALDS-------NQLEWAKNELGVE---TTY-----TNYKDMIDTENIDAIFIVAPTPFHPEMTIYAMNAGL 96 (346)
T ss_dssp SSEEEEEEECSCH-------HHHHHHHHTTCCS---EEE-----SCHHHHHTTSCCSEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEecCCH-------HHHHHHHHHhCCC---ccc-----CCHHHHhcCCCCCEEEEeCChHhHHHHHHHHHHCCC
Confidence 4777766655431 4555666666542 111 34556676 68988876544333334678899999
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
+|++-.
T Consensus 97 ~v~~eK 102 (346)
T 3cea_A 97 NVFCEK 102 (346)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999853
No 279
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=33.04 E-value=93 Score=28.92 Aligned_cols=102 Identities=14% Similarity=0.039 Sum_probs=59.3
Q ss_pred CCCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 267 ~~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
.++.+|+.+|-= .-| ..-++++.++.....+..++++++-+.+.. .+..++.+++++.+ ++ .
T Consensus 24 s~klrvgiIG~G--~ig-~~h~~~~~~~~~~~~~~~~~~elvav~d~~-------~~~a~~~a~~~~~~-~~-------y 85 (412)
T 4gqa_A 24 SARLNIGLIGSG--FMG-QAHADAYRRAAMFYPDLPKRPHLYALADQD-------QAMAERHAAKLGAE-KA-------Y 85 (412)
T ss_dssp -CEEEEEEECCS--HHH-HHHHHHHHHHHHHCTTSSSEEEEEEEECSS-------HHHHHHHHHHHTCS-EE-------E
T ss_pred cccceEEEEcCc--HHH-HHHHHHHHhccccccccCCCeEEEEEEcCC-------HHHHHHHHHHcCCC-eE-------E
Confidence 345788888741 111 234566666544321111256777666543 15667777888754 11 1
Q ss_pred hHHHHHHhc--CcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 347 RDLVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 347 ~~~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
.++.++++. .|+++..+-...-.-...+|+..|++|++-.
T Consensus 86 ~d~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EK 127 (412)
T 4gqa_A 86 GDWRELVNDPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEK 127 (412)
T ss_dssp SSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCCeEeec
Confidence 455666764 6777666443333345789999999999854
No 280
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=32.97 E-value=63 Score=27.11 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=43.6
Q ss_pred hHHHHHHhcCcEEEEcCCCCCCChH--HHHHHH------hCCcEEEeCCCCCccceec-------c-cCC---ccceeec
Q 012436 347 RDLVKLLGGAVVGIHSMIDEHFGIS--VVEYMA------AGAIPIAHNSAGPKMDIVL-------E-EDG---QQTGFLA 407 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~~e~~~~~--~~Ea~a------~G~PvI~~~~~~~~~~~v~-------~-~~~---~~~g~~~ 407 (464)
+.-.-++..||.+|.- ..|+|.- ++|++. .++||+.-+..+.+..++. + ... ...-.++
T Consensus 97 ~Rk~~~~~~sda~I~l--pGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~ 174 (216)
T 1ydh_A 97 ERKAAMAQEAEAFIAL--PGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSA 174 (216)
T ss_dssp HHHHHHHHHCSEEEEC--SCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEE
T ss_pred HHHHHHHHhCCEEEEe--CCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEe
Confidence 3444556779987653 2556644 677775 6899999987665443332 1 000 0111345
Q ss_pred CCHHHHHHHHHHH
Q 012436 408 QNAEEYADAIVKI 420 (464)
Q Consensus 408 ~~~~~la~~i~~l 420 (464)
+|++++.+.|.+.
T Consensus 175 d~~ee~~~~l~~~ 187 (216)
T 1ydh_A 175 PTAKELMEKMEEY 187 (216)
T ss_dssp SSHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHh
Confidence 6999999988764
No 281
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=32.91 E-value=90 Score=25.59 Aligned_cols=104 Identities=11% Similarity=0.130 Sum_probs=58.5
Q ss_pred EEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcC-CCCCCChHHHHHHH---hCCc
Q 012436 306 RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSM-IDEHFGISVVEYMA---AGAI 381 (464)
Q Consensus 306 ~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps-~~e~~~~~~~Ea~a---~G~P 381 (464)
+++++.+.+ ...+.+....+..+ .|.... +.++..+.+...|++++-. ..+.-|..+++.+. ..+|
T Consensus 4 ~ilivdd~~-----~~~~~l~~~L~~~~---~v~~~~--~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 73 (220)
T 1p2f_A 4 KIAVVDDDK-----NILKKVSEKLQQLG---RVKTFL--TGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETW 73 (220)
T ss_dssp EEEEECSCH-----HHHHHHHHHHTTTE---EEEEES--SHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSE
T ss_pred eEEEEeCCH-----HHHHHHHHHHHhCC---CEEEEC--CHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCc
Confidence 556666542 44456666665543 333332 3355555556678877643 33444566665554 4678
Q ss_pred EEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 382 PIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 382 vI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
+|.-........ .... |..+++.. +++++.++|..++.
T Consensus 74 ii~lt~~~~~~~~~~~~~~---ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 74 VILLTLLSDDESVLKGFEA---GADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp EEEEESCCSHHHHHHHHHH---TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHHHc
Confidence 776432222122 2233 56677764 99999999988764
No 282
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=32.84 E-value=1.4e+02 Score=27.25 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHH
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLL 85 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~ 85 (464)
+|.+++++-+..++.. +.-+.++|+|+-. |-.+++..++.++...| .+|.+.++..-..++.+.
T Consensus 161 tQaL~Dl~Ti~e~~~~-~~l~gl~ia~vGD------~~~~va~S~~~~~~~~g--~~v~~~~P~~~~p~~~~~ 224 (358)
T 4h31_A 161 TQILADFLTMLEHSQG-KALADIQFAYLGD------ARNNVGNSLMVGAAKMG--MDIRLVGPQAYWPDEELV 224 (358)
T ss_dssp HHHHHHHHHHHHTTTT-CCGGGCEEEEESC------TTSHHHHHHHHHHHHHT--CEEEEESCGGGSCCHHHH
T ss_pred hHHHHHHHHHHHHhcC-CCcCceEEEecCC------CCcccchHHHHHHHhcC--ceEEEeCCcccCCCHHHH
Confidence 6899999888665432 2345689999754 12488999999999999 888888876433334443
No 283
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=32.70 E-value=2.9e+02 Score=25.30 Aligned_cols=60 Identities=8% Similarity=-0.047 Sum_probs=34.8
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCC--CCcEEEccCC
Q 012436 275 VAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV--DGNVEFYKNL 344 (464)
Q Consensus 275 ~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~ 344 (464)
.+......+.+...+++..+.+.. |+..-+++.+.. ..-.+.+.+++.|+ ++.|.++|+=
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~----~~~~aI~~~nD~------~A~g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 178 QGLETAPENWQHAQNRLADWLQTL----PPQTGIIAVTDA------RARHILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp CCSCSSCSSHHHHHHHHHHHHHHS----CTTEEEEESSHH------HHHHHHHHHHHHTCCTTTTSEEEESS
T ss_pred ccccccccchhhHHHHHHHHHHhC----CCCeEEEEEecH------HHHHHHHHHHHcCCCCCceEEEEeec
Confidence 343333345556666666666554 467778877531 12234455566665 5778888864
No 284
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=32.61 E-value=54 Score=28.14 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=26.0
Q ss_pred HHHHHHh-cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeCCC
Q 012436 348 DLVKLLG-GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHNSA 388 (464)
Q Consensus 348 ~~~~~l~-~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 388 (464)
++.+++. .+|+.|--+..+..--.+..+...|+|+|+...|
T Consensus 37 dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG 78 (245)
T 1p9l_A 37 PLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG 78 (245)
T ss_dssp CTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred CHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCC
Confidence 4444554 7898886555554433345668889998886554
No 285
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=32.37 E-value=89 Score=24.60 Aligned_cols=36 Identities=8% Similarity=-0.155 Sum_probs=23.1
Q ss_pred HHHhcCcEEEEcC-CCCCCChHHH---HHHHhCCcEEEeC
Q 012436 351 KLLGGAVVGIHSM-IDEHFGISVV---EYMAAGAIPIAHN 386 (464)
Q Consensus 351 ~~l~~ad~~v~ps-~~e~~~~~~~---Ea~a~G~PvI~~~ 386 (464)
+.+.+||++|.-. ..+.=+-+.. =|.+.|+||++-.
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~ 113 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVI 113 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEE
Confidence 4578999886542 1222233444 4889999999865
No 286
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=32.31 E-value=1.4e+02 Score=21.47 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=61.7
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a~-- 378 (464)
..++.++.+.+ ...+.++...++.|.. .+.... +.++..+.+.. .|++++-.. .+.-|..+++.+..
T Consensus 6 ~~~ilivdd~~-----~~~~~l~~~L~~~g~~-~v~~~~--~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~ 77 (129)
T 1p6q_A 6 KIKVLIVDDQV-----TSRLLLGDALQQLGFK-QITAAG--DGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANP 77 (129)
T ss_dssp CCCEEEECSSH-----HHHHHHHHHHHTTTCS-CEECCS--SHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCT
T ss_pred cCeEEEEcCCH-----HHHHHHHHHHHHCCCc-EEEecC--CHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCc
Confidence 45677777543 4456677766665431 344333 33666666654 577776432 33445667777643
Q ss_pred ---CCcEEEeCCCCCcc---ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|.....+... +.... |..+++.. +.+++.++|..++.
T Consensus 78 ~~~~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 78 ATKKAAFIILTAQGDRALVQKAAAL---GANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp TSTTCEEEECCSCCCHHHHHHHHHH---TCSCEECCCSSHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHHHH
Confidence 56777643222211 12233 55667764 99999999987764
No 287
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=32.23 E-value=1.2e+02 Score=25.82 Aligned_cols=42 Identities=7% Similarity=0.100 Sum_probs=26.9
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
+++..+|+++.+..... -....+..+.+++.+.| +++.++..
T Consensus 4 ~~~s~~Igvi~~~~~~~-~~~~~~~gi~~~~~~~g--~~~~~~~~ 45 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDY-FSTELFKGISSILESRG--YIGVLFDA 45 (276)
T ss_dssp -CCCCEEEEEESCTTSH-HHHHHHHHHHHHHHTTT--CEEEEEEC
T ss_pred CCCCcEEEEEeCCCCch-HHHHHHHHHHHHHHHCC--CEEEEEeC
Confidence 34567899998876433 34455566667777777 66666554
No 288
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=32.21 E-value=1.4e+02 Score=26.69 Aligned_cols=33 Identities=12% Similarity=-0.026 Sum_probs=19.7
Q ss_pred HHhhhcCCcEEEecccccccchhh---hccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPLA---RIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~~---~~~~~p~v~ 166 (464)
+++.+.++|+|+..+........+ -..|+++++
T Consensus 60 ~ll~~~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~ 95 (334)
T 3ohs_X 60 ELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLC 95 (334)
T ss_dssp HHHHCTTCCEEEECCCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 446667899887555544433322 256777665
No 289
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=32.21 E-value=1.5e+02 Score=21.79 Aligned_cols=108 Identities=6% Similarity=-0.020 Sum_probs=60.9
Q ss_pred cEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHHh---
Q 012436 305 PRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMAA--- 378 (464)
Q Consensus 305 ~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a~--- 378 (464)
.+++++.+.+ ...+.++...+..|. .+.... +.++..+.+.. .|++++-. ..+.-|..+++.+..
T Consensus 4 ~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 74 (138)
T 3c3m_A 4 YTILVVDDSP-----MIVDVFVTMLERGGY--RPITAF--SGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPA 74 (138)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTT
T ss_pred ceEEEEeCCH-----HHHHHHHHHHHHcCc--eEEEeC--CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcc
Confidence 4667776543 445666666666543 233322 34666666654 57776643 334456677777753
Q ss_pred --CCcEEEe-CCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 --GAIPIAH-NSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 --G~PvI~~-~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|.. ..... .........+..+++.. +.+++.++|..++.
T Consensus 75 ~~~~~ii~ls~~~~~-~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~ 122 (138)
T 3c3m_A 75 TRDIPVLMLTAKPLT-PEEANEYGSYIEDYILKPTTHHQLYEAIEHVLA 122 (138)
T ss_dssp TTTSCEEEEESSCCC-HHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCh-HHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHH
Confidence 5677754 33222 22122111123467664 89999999999886
No 290
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=32.16 E-value=43 Score=28.25 Aligned_cols=42 Identities=5% Similarity=-0.013 Sum_probs=26.3
Q ss_pred ccceEEEecCCCC---CCCCcchhhHHHHHHhhhhCCCC-ceEEEc
Q 012436 33 RTTSVAFFHPNTN---DGGGGERVLWCAVKAIQEESPDL-DCIVYT 74 (464)
Q Consensus 33 ~~mkI~~~~~~~~---~~GG~~~~~~~l~~~L~~~g~~~-~v~~~~ 74 (464)
.+|||+++..+.. .+|=..+.+..+++.+.+.+.++ +|.++.
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~id 48 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQIN 48 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 4689999988775 33223344566677787775445 555544
No 291
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=32.06 E-value=2.2e+02 Score=25.18 Aligned_cols=41 Identities=7% Similarity=0.057 Sum_probs=22.0
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
+.+...|+++.+..... -....+..+.+++.+.| +.+.++.
T Consensus 59 ~~~~~~Igvi~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~ 99 (339)
T 3h5o_A 59 SAKSRTVLVLIPSLANT-VFLETLTGIETVLDAAG--YQMLIGN 99 (339)
T ss_dssp ----CEEEEEESCSTTC-TTHHHHHHHHHHHHHTT--CEEEEEE
T ss_pred cCCCCEEEEEeCCCCCH-HHHHHHHHHHHHHHHCC--CEEEEEe
Confidence 34456777777665433 34455556666677777 5555444
No 292
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=31.99 E-value=25 Score=32.44 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=56.5
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
+++|+.+|-=.- | ..-+.++..+..-... ..+.+++-+.+.. .+..++.+++++.+ .+ ..+
T Consensus 6 klrvgiIG~G~i--g-~~h~~~~~~~~~~~~~-~~~~~l~av~d~~-------~~~a~~~a~~~g~~-~~-------~~d 66 (390)
T 4h3v_A 6 NLGIGLIGYAFM--G-AAHSQAWRSAPRFFDL-PLHPDLNVLCGRD-------AEAVRAAAGKLGWS-TT-------ETD 66 (390)
T ss_dssp EEEEEEECHHHH--H-HHHHHHHHHHHHHSCC-SSEEEEEEEECSS-------HHHHHHHHHHHTCS-EE-------ESC
T ss_pred cCcEEEEcCCHH--H-HHHHHHHHhCcccccc-ccCceEEEEEcCC-------HHHHHHHHHHcCCC-cc-------cCC
Confidence 366777763111 1 1235555555432100 0134677666543 25677778888764 11 145
Q ss_pred HHHHHhc--CcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 349 LVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 349 ~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
+.++++. .|+++..+....-.-.+.+|+..|++|++=.
T Consensus 67 ~~~ll~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EK 106 (390)
T 4h3v_A 67 WRTLLERDDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEK 106 (390)
T ss_dssp HHHHTTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred HHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCCceeec
Confidence 6666765 6777766544433445789999999999854
No 293
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=31.83 E-value=83 Score=22.91 Aligned_cols=97 Identities=16% Similarity=0.104 Sum_probs=56.8
Q ss_pred EEEEEcCCCCCccHHHH--HHHHHHHHhcCCCCcEEEccCCCh-hHH-HHHHhcCcEEEEcCCCCCCChHHHHHHHhCCc
Q 012436 306 RLQFVGSCRNKSDEERL--QSLKDKSIELKVDGNVEFYKNLLY-RDL-VKLLGGAVVGIHSMIDEHFGISVVEYMAAGAI 381 (464)
Q Consensus 306 ~l~i~G~~~~~~~~~~~--~~l~~~~~~~~l~~~v~~~g~~~~-~~~-~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~P 381 (464)
+++.+-.++..-.-.|. +.|++.++++|+.-.|+-.|...- ..+ .+.++.||++|+....+--. . .=..|+|
T Consensus 4 kivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~~v~~---~-~RF~gk~ 79 (106)
T 2m1z_A 4 KIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTKVRN---K-ERFDGKV 79 (106)
T ss_dssp EEEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESSCCST---H-HHHTTSE
T ss_pred cEEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccccccc---h-hccCCCc
Confidence 44555444433322333 689999999998777777776421 122 35667999988875322111 1 2234999
Q ss_pred EEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHc
Q 012436 382 PIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 382 vI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~ 422 (464)
++-++.. +.+. |++.+.+...++++
T Consensus 80 v~~~~v~----~~i~------------~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 80 VLEVPVS----APIK------------DAEKVINAALALID 104 (106)
T ss_dssp EEEECTT----HHHH------------CHHHHHHHHHHHHT
T ss_pred EEEEcHH----HHHH------------CHHHHHHHHHHHHh
Confidence 9987744 2222 46666666655543
No 294
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=31.81 E-value=31 Score=28.02 Aligned_cols=30 Identities=7% Similarity=0.027 Sum_probs=21.9
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhh
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEE 64 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~ 64 (464)
|||+++..+....|-....+..+++.+.+.
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~ 30 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENS 30 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTC
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHh
Confidence 789998877765545666777777778765
No 295
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=31.79 E-value=1.4e+02 Score=23.62 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=63.7
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHH---
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMA--- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a--- 377 (464)
..+++++.+.+ ...+.++...++.|. .|.... +.++..+.+.. .|++++-. ..+.-|..+++.+.
T Consensus 7 ~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~ 77 (184)
T 3rqi_A 7 DKNFLVIDDNE-----VFAGTLARGLERRGY--AVRQAH--NKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQ 77 (184)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEEC--SHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHC
T ss_pred CCeEEEEcCCH-----HHHHHHHHHHHHCCC--EEEEeC--CHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcC
Confidence 56777877543 455667777776553 343333 34666677655 57776643 24455677766654
Q ss_pred hCCcEEEeCCCCCcc---ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 AGAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 ~G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|.-......+ +.... |..+++.. +++++.++|..++.
T Consensus 78 ~~~~ii~lt~~~~~~~~~~a~~~---Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 78 PDARILVLTGYASIATAVQAVKD---GADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp TTCEEEEEESSCCHHHHHHHHHH---TCSEEEESSCCHHHHHHHTSTTHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHh---CHHHheeCCCCHHHHHHHHHHHHH
Confidence 367877643222211 22333 56677774 99999999887765
No 296
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=31.66 E-value=1.8e+02 Score=22.60 Aligned_cols=94 Identities=12% Similarity=0.123 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc----Cc-EEEEcCCCCCCChHHHHHH----HhCCcEEEe---CCCCC
Q 012436 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG----AV-VGIHSMIDEHFGISVVEYM----AAGAIPIAH---NSAGP 390 (464)
Q Consensus 323 ~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad-~~v~ps~~e~~~~~~~Ea~----a~G~PvI~~---~~~~~ 390 (464)
+.+++.+.++|+ .+.+.-.-...++.+.+.+ +| +.+.|--+...+..+.+|+ +.++|+|=- ++-.-
T Consensus 36 ~~l~~~a~~~g~--~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VEVHiSNi~aR 113 (151)
T 3u80_A 36 KLCAEWGKDLGL--EVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHISNPSAR 113 (151)
T ss_dssp HHHHHHHHHTTE--EEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEEESSCCC--
T ss_pred HHHHHHHHHcCC--EEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEEEEcCCcccc
Confidence 445555555553 2455444444555555544 45 6778888888999999994 359999953 33221
Q ss_pred ccc-----eecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 391 KMD-----IVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 391 ~~~-----~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
++ ++.+ ...|.++. -.+...-+++.+++
T Consensus 114 -E~FRh~S~~s~---~a~G~I~G~G~~gY~lAl~~~~~ 147 (151)
T 3u80_A 114 -DEFRKRSVISP---VATGTITGMGFYGYKLALDAVAH 147 (151)
T ss_dssp --------CSCC---CCSEEEESSTTHHHHHHHHHHHH
T ss_pred -cchhhcccccc---cceEEEEecChHHHHHHHHHHHH
Confidence 22 2333 34667776 66777767665543
No 297
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=31.56 E-value=1.5e+02 Score=21.72 Aligned_cols=107 Identities=10% Similarity=0.001 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a~-- 378 (464)
..+++++.+.+ ...+.++...++.|. .|... -+.++..+.+.. .|++++-. ..+.-|..+++.+..
T Consensus 4 ~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~--~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 4 PHTLLIVDDDD-----TVAEMLELVLRGAGY--EVRRA--ASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEE--SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred CCEEEEEeCCH-----HHHHHHHHHHHHCCC--EEEEe--CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 45677776543 445667776666553 24332 234666666644 57776643 344456667666643
Q ss_pred ---CCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|.....+.... .... |..+++.. +++++.++|.+++.
T Consensus 75 ~~~~~pii~~t~~~~~~~~~~~~~~---ga~~~l~KP~~~~~L~~~i~~~l~ 123 (136)
T 3t6k_A 75 LTKTLPILMLTAQGDISAKIAGFEA---GANDYLAKPFEPQELVYRVKNILA 123 (136)
T ss_dssp GGTTCCEEEEECTTCHHHHHHHHHH---TCSEEEETTCCHHHHHHHHHHHHH
T ss_pred CcCCccEEEEecCCCHHHHHHHHhc---CcceEEeCCCCHHHHHHHHHHHHh
Confidence 577776433322121 2233 56677774 99999999999886
No 298
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=31.54 E-value=95 Score=24.33 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc----Cc-EEEEcCCCCCCChHHHHHHHh-C-CcEEEeCCCCC--
Q 012436 320 ERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG----AV-VGIHSMIDEHFGISVVEYMAA-G-AIPIAHNSAGP-- 390 (464)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad-~~v~ps~~e~~~~~~~Ea~a~-G-~PvI~~~~~~~-- 390 (464)
+..+.+++.+.++|+ .+.+.-.-...++.+.+.+ +| +.+.|--+...+..+.+|++. + +|+|=-.....
T Consensus 35 di~~~l~~~a~~~g~--~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~~P~VEVHiSNi~a 112 (156)
T 1gtz_A 35 DVEALCVKAAAAHGG--TVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSVAILDALNTCDGLPVVEVHISNIHQ 112 (156)
T ss_dssp HHHHHHHHHHHTTTC--CEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCHHHHHHHHTSTTCCEEEEESSCGGG
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhcCCCCEEEEEecCccc
Confidence 344566666666665 3666655555666666654 45 567787777788899999876 5 79985432211
Q ss_pred ccc-----eecccCCccceeecC-CHHHHHHHHHHHHc
Q 012436 391 KMD-----IVLEEDGQQTGFLAQ-NAEEYADAIVKIIS 422 (464)
Q Consensus 391 ~~~-----~v~~~~~~~~g~~~~-~~~~la~~i~~l~~ 422 (464)
.++ ++.+ ...|.++. -.+...-+++.+++
T Consensus 113 RE~FRh~S~~s~---~a~GvI~G~G~~gY~lAl~a~~~ 147 (156)
T 1gtz_A 113 REPFRHHSYVSQ---RADGVVAGCGVQGYVFGVERIAA 147 (156)
T ss_dssp SCGGGSCCSGGG---TCSEEEESSTTHHHHHHHHHHHH
T ss_pred ccccccccccCc---ceeEEEEecCHHHHHHHHHHHHH
Confidence 122 2333 45677776 66777666666543
No 299
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=31.53 E-value=1e+02 Score=27.61 Aligned_cols=69 Identities=9% Similarity=-0.069 Sum_probs=40.3
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGA 380 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~ 380 (464)
++++++-+.+... +..++.+++++.. . ...++.++++ ..|+++..+....-.-.+.+|+..|+
T Consensus 27 ~~~~lvav~d~~~-------~~~~~~a~~~~~~---~-----~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk 91 (336)
T 2p2s_A 27 AGAELAGVFESDS-------DNRAKFTSLFPSV---P-----FAASAEQLITDASIDLIACAVIPCDRAELALRTLDAGK 91 (336)
T ss_dssp TTCEEEEEECSCT-------TSCHHHHHHSTTC---C-----BCSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEeCCCH-------HHHHHHHHhcCCC---c-----ccCCHHHHhhCCCCCEEEEeCChhhHHHHHHHHHHCCC
Confidence 3788776655432 2333445554311 1 1245667776 57887776543333334678999999
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
+|++-.
T Consensus 92 hVl~EK 97 (336)
T 2p2s_A 92 DFFTAK 97 (336)
T ss_dssp EEEECS
T ss_pred cEEEeC
Confidence 999853
No 300
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=31.49 E-value=1.1e+02 Score=28.03 Aligned_cols=56 Identities=9% Similarity=0.041 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 323 ~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
+..++.+++++.+. + ..++.++++. .|+++..+....-.-.+.+|+..|++|++-.
T Consensus 57 ~~a~~~a~~~~~~~-~-------~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EK 114 (383)
T 3oqb_A 57 EKVEALAKRFNIAR-W-------TTDLDAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCEK 114 (383)
T ss_dssp HHHHHHHHHTTCCC-E-------ESCHHHHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEECS
T ss_pred HHHHHHHHHhCCCc-c-------cCCHHHHhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEcC
Confidence 56677777777541 1 1456666765 7877766544444445789999999999743
No 301
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=31.31 E-value=2.8e+02 Score=24.55 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=51.2
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWI 111 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (464)
.+++||+++.+.. | .-+..|..+..+-....++..+.++. +.. .......|+ +++.++....
T Consensus 103 ~~~~ri~vl~Sg~----g--~nl~~ll~~~~~g~l~~~I~~Visn~----~~~-~~~A~~~gI------p~~~~~~~~~- 164 (302)
T 3o1l_A 103 AQKKRVVLMASRE----S--HCLADLLHRWHSDELDCDIACVISNH----QDL-RSMVEWHDI------PYYHVPVDPK- 164 (302)
T ss_dssp TSCCEEEEEECSC----C--HHHHHHHHHHHTTCSCSEEEEEEESS----STT-HHHHHTTTC------CEEECCCCSS-
T ss_pred CCCcEEEEEEeCC----c--hhHHHHHHHHHCCCCCcEEEEEEECc----HHH-HHHHHHcCC------CEEEcCCCcC-
Confidence 4578999875432 3 34666676665533345665554432 111 123445555 3333221110
Q ss_pred ccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEee
Q 012436 112 EESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTH 169 (464)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h 169 (464)
.+ ...-....+.+++.+||+++. .++.-.++ +.....-+ ++-+|
T Consensus 165 -----~r-------~~~~~~~~~~l~~~~~DliVl-agym~IL~~~~l~~~~~~-~INiH 210 (302)
T 3o1l_A 165 -----DK-------EPAFAEVSRLVGHHQADVVVL-ARYMQILPPQLCREYAHQ-VINIH 210 (302)
T ss_dssp -----CC-------HHHHHHHHHHHHHTTCSEEEE-SSCCSCCCTTHHHHTTTC-EEEEE
T ss_pred -----CH-------HHHHHHHHHHHHHhCCCEEEH-hHhhhhcCHHHHhhhhCC-eEEeC
Confidence 00 001123456788999998883 33333433 33333323 44557
No 302
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=31.27 E-value=78 Score=28.69 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=43.7
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHH--hcCcEEEEcCCCCCCChHHHHHHHhCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLL--GGAVVGIHSMIDEHFGISVVEYMAAGA 380 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l--~~ad~~v~ps~~e~~~~~~~Ea~a~G~ 380 (464)
|+++++-+.+.. .+..++.+++++++. ..++.+++ ...|+++..+....-.-.+.+++..|+
T Consensus 28 ~~~~lvav~d~~-------~~~~~~~~~~~g~~~---------~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk 91 (354)
T 3db2_A 28 EKLKLVTCYSRT-------EDKREKFGKRYNCAG---------DATMEALLAREDVEMVIITVPNDKHAEVIEQCARSGK 91 (354)
T ss_dssp SSEEEEEEECSS-------HHHHHHHHHHHTCCC---------CSSHHHHHHCSSCCEEEECSCTTSHHHHHHHHHHTTC
T ss_pred CCcEEEEEECCC-------HHHHHHHHHHcCCCC---------cCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCC
Confidence 577777555442 145566666666431 25666777 458888776544443445688999999
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
+|++-.
T Consensus 92 ~vl~EK 97 (354)
T 3db2_A 92 HIYVEK 97 (354)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 999865
No 303
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=31.27 E-value=27 Score=30.74 Aligned_cols=41 Identities=5% Similarity=-0.024 Sum_probs=28.6
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
..+|||+++..+...+|=....+..+++.+.+.| +++.++.
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G--~eveiid 96 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFG--AETRIFD 96 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTT--CEEEEBC
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCC--CEEEEEe
Confidence 3568999998887765345566667788888878 4555544
No 304
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=31.23 E-value=20 Score=29.71 Aligned_cols=35 Identities=6% Similarity=-0.074 Sum_probs=18.9
Q ss_pred ccccccceEEEecCCCCCCCCcch-hhHHHHHHhhhhC
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGER-VLWCAVKAIQEES 65 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~-~~~~l~~~L~~~g 65 (464)
|+++.+|||+++..+...+ |..+ .+..+++.+ +.|
T Consensus 1 m~~M~~mkIl~I~GS~r~~-s~t~~la~~~~~~~-~~g 36 (199)
T 4hs4_A 1 MTTTSPLHFVTLLGSLRKA-SFNAAVARALPEIA-PEG 36 (199)
T ss_dssp ----CCEEEEEEECCCSTT-CHHHHHHHHHHHHC-CTT
T ss_pred CCCCCCCEEEEEEcCCCCC-ChHHHHHHHHHHHc-cCC
Confidence 4456679999998877655 4333 344444444 345
No 305
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=31.16 E-value=26 Score=28.80 Aligned_cols=36 Identities=8% Similarity=-0.009 Sum_probs=25.9
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCce
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDC 70 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v 70 (464)
..|+|+++. .+..|.++.++..+++.|.+.|+++++
T Consensus 20 ~~~kv~IvY--~S~tGnTe~~A~~ia~~l~~~g~~v~v 55 (191)
T 1bvy_F 20 HNTPLLVLY--GSNMGTAEGTARDLADIAMSKGFAPQV 55 (191)
T ss_dssp -CCCEEEEE--ECSSSHHHHHHHHHHHHHHTTTCCCEE
T ss_pred CCCeEEEEE--ECCChHHHHHHHHHHHHHHhCCCceEE
Confidence 446777663 333478999999999999998855544
No 306
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=31.02 E-value=1.6e+02 Score=21.59 Aligned_cols=107 Identities=16% Similarity=0.102 Sum_probs=62.3
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEE-ccCCChhHHHHHHhc--CcEEEEcCCC--CCCChHHHHHHH-
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYRDLVKLLGG--AVVGIHSMID--EHFGISVVEYMA- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~~~~~~~l~~--ad~~v~ps~~--e~~~~~~~Ea~a- 377 (464)
..+++++.+.+ ...+.++...++.|. .+.. .. +.++..+.+.. .|++++-... +.-|..+++.+.
T Consensus 9 ~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~ 79 (140)
T 3cg0_A 9 LPGVLIVEDGR-----LAAATLRIQLESLGY--DVLGVFD--NGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAA 79 (140)
T ss_dssp CCEEEEECCBH-----HHHHHHHHHHHHHTC--EEEEEES--SHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHH
T ss_pred CceEEEEECCH-----HHHHHHHHHHHHCCC--eeEEEEC--CHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHh
Confidence 56788887643 455667777776653 2331 22 33566665543 6877765332 234555555444
Q ss_pred -hCCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 -AGAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 -~G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.++|+|+-........ .... |..+++.. +.+++.++|..++.
T Consensus 80 ~~~~~ii~ls~~~~~~~~~~~~~~---g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 80 GCNLPIIFITSSQDVETFQRAKRV---NPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp HSCCCEEEEECCCCHHHHHHHHTT---CCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHhc---CCCEEEeCCCCHHHHHHHHHHHHh
Confidence 4788886432222121 2223 55666664 99999999988875
No 307
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=31.00 E-value=36 Score=27.77 Aligned_cols=40 Identities=8% Similarity=-0.016 Sum_probs=27.9
Q ss_pred ceEEEecCCCCC-CCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 35 TSVAFFHPNTND-GGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~-~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
|||+++..+... .|-....+..+++.+.+.|.+++|.++.
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~d 42 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRD 42 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 789998777654 3356677778888898887445555544
No 308
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=30.72 E-value=66 Score=25.02 Aligned_cols=43 Identities=5% Similarity=0.000 Sum_probs=27.5
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
|.....||++++-.-+... -.-..+..++..|.+.| ++|++..
T Consensus 1 ~~~~~~m~~LilLGCPE~P-vq~p~~lYl~~~Lk~~G--~~v~VA~ 43 (157)
T 1kjn_A 1 MKTESTGKALMVLGCPESP-VQIPLAIYTSHKLKKKG--FRVTVTA 43 (157)
T ss_dssp -----CCEEEEECCCSCST-THHHHHHHHHHHHHHTT--CEEEEEE
T ss_pred CccccceeeeEEecCCCCc-chhhHHHHHHHHHHhcC--CeeEEec
Confidence 3455679988886544444 45556678999999999 6666654
No 309
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=30.62 E-value=1.4e+02 Score=25.45 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=27.0
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
+++..+|+++.+..... =.......+.+++.+.| +++.++..
T Consensus 2 ~~~~~~Igvi~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~ 43 (280)
T 3gyb_A 2 SLRTQLIAVLIDDYSNP-WFIDLIQSLSDVLTPKG--YRLSVIDS 43 (280)
T ss_dssp --CCCEEEEEESCTTSG-GGHHHHHHHHHHHGGGT--CEEEEECS
T ss_pred CCccCEEEEEeCCCCCh-HHHHHHHHHHHHHHHCC--CEEEEEeC
Confidence 34567899998876443 34556666677788888 66666554
No 310
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=30.54 E-value=1.2e+02 Score=29.01 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=21.8
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
+.+++++||+++-... .|| ..-...+..|.+...+++++.++
T Consensus 34 ~~~m~~irvgiIG~g~--~GG--~~g~~h~~~l~~~~~~~~lvav~ 75 (479)
T 2nvw_A 34 VPSSRPIRVGFVGLTS--GKS--WVAKTHFLAIQQLSSQFQIVALY 75 (479)
T ss_dssp SGGGCCEEEEEECCCS--TTS--HHHHTHHHHHHHTTTTEEEEEEE
T ss_pred CCCCCcCEEEEEcccC--CCC--HHHHHHHHHHHhcCCCeEEEEEE
Confidence 3445678999984321 112 22233456666652236766554
No 311
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=30.27 E-value=1.3e+02 Score=27.50 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+--++. +-+.+||+|+-.. ..+++..++.++...| .+|.+.++..
T Consensus 162 tQaLaDl~Ti~E~~G---~l~glkva~vGD~------~nnva~Sl~~~~~~lG--~~v~~~~P~~ 215 (365)
T 4amu_A 162 TQIIADFMTMKEKFG---NLKNKKIVFIGDY------KNNVGVSTMIGAAFNG--MHVVMCGPDN 215 (365)
T ss_dssp HHHHHHHHHHHHHHS---SCTTCEEEEESST------TSHHHHHHHHHHHHTT--CEEEEESCGG
T ss_pred HHHHHHHHHHHHHhC---CCCCCEEEEECCC------CcchHHHHHHHHHHcC--CEEEEECCcc
Confidence 689999888876653 3567899997442 2357888899999999 8888888754
No 312
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=30.23 E-value=1.7e+02 Score=26.63 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhcccccccccce--EEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 13 TAVLASILILASHVHNARRNRTTS--VAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mk--I~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
+|.+++++-+..++-+. .-+.+| |+|+-. ...+ | .+++..++.++...| ++|.+.++.
T Consensus 170 tQaLaDl~TI~E~~g~~-~l~glkvvva~vGD-l~~~-~-nrva~Sl~~~~~~~G--~~v~~~~P~ 229 (359)
T 1zq6_A 170 CQELAHALALQEHFGTP-DLRGKKYVLTWTYH-PKPL-N-TAVANSALTIATRMG--MDVTLLCPT 229 (359)
T ss_dssp HHHHHHHHHHHHHHTSS-CCTTCEEEEEECCC-SSCC-C-SHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred HHHHHHHHHHHHHhCCC-cccCCeeEEEEEec-cccc-c-cchHHHHHHHHHHcC--CEEEEEcCc
Confidence 68999998887765321 135678 777643 2222 4 899999999999999 888888876
No 313
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=30.04 E-value=2.2e+02 Score=24.66 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=25.5
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
.++.+...|+++.+..... -...++..+.+++.+.| +++.++..
T Consensus 10 L~~~~s~~Igvi~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~ 53 (303)
T 3kke_A 10 LRHSRSGTIGLIVPDVNNA-VFADMFSGVQMAASGHS--TDVLLGQI 53 (303)
T ss_dssp -------CEEEEESCTTST-THHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred HhhCCCCEEEEEeCCCcCh-HHHHHHHHHHHHHHHCC--CEEEEEeC
Confidence 3455667899998876543 35566667777888888 56555544
No 314
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=30.01 E-value=53 Score=24.89 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=23.3
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
.+++|+++ |..+.-..+++.|.+.| ++|+++..+
T Consensus 5 ~~~~v~I~--------G~G~iG~~la~~L~~~g--~~V~~id~~ 38 (141)
T 3llv_A 5 GRYEYIVI--------GSEAAGVGLVRELTAAG--KKVLAVDKS 38 (141)
T ss_dssp -CCSEEEE--------CCSHHHHHHHHHHHHTT--CCEEEEESC
T ss_pred CCCEEEEE--------CCCHHHHHHHHHHHHCC--CeEEEEECC
Confidence 34577775 33456678899999999 667776653
No 315
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=29.86 E-value=1.6e+02 Score=21.44 Aligned_cols=106 Identities=7% Similarity=0.022 Sum_probs=60.6
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc-CcEEEEcC-CCCCCChHHHHHHH--h-
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG-AVVGIHSM-IDEHFGISVVEYMA--A- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~-ad~~v~ps-~~e~~~~~~~Ea~a--~- 378 (464)
..++.++.+.+ ...+.++...+..|. .|... -+.++..+.+.. .|++++-. ..+.-|..+++.+. .
T Consensus 7 ~~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~--~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~ 77 (136)
T 1dcf_A 7 GLKVLVMDENG-----VSRMVTKGLLVHLGC--EVTTV--SSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFT 77 (136)
T ss_dssp TCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEE--SSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHHHcCC--eEEEe--CCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhh
Confidence 56777877543 445666666666553 34332 233666666543 38776643 23444666666664 1
Q ss_pred ----CCc-EE-EeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ----GAI-PI-AHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ----G~P-vI-~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..| +| .|..... .. .... |..+++.. +.+++.+++.+++.
T Consensus 78 ~~~~~~~~ii~~s~~~~~-~~~~~~~~~---ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 78 KQRHQRPLLVALSGNTDK-STKEKCMSF---GLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp -CCSCCCEEEEEESCCSH-HHHHHHHHT---TCCEEEESSCCHHHHHHHHHHHHS
T ss_pred hccCCCceEEEEeCCCCH-HHHHHHHHc---CCCeEEECCCCHHHHHHHHHHHhc
Confidence 234 54 4544332 22 2233 56677764 99999999998876
No 316
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=29.82 E-value=1.6e+02 Score=21.34 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=58.2
Q ss_pred cEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEE-EccCCChhHHHHHHh--cCcEEEEcC-CCCCCChHHHHHHHh--
Q 012436 305 PRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE-FYKNLLYRDLVKLLG--GAVVGIHSM-IDEHFGISVVEYMAA-- 378 (464)
Q Consensus 305 ~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~~~~~~l~--~ad~~v~ps-~~e~~~~~~~Ea~a~-- 378 (464)
++++++.+.+ ...+.++...++.|. .+. ..... ++..+.+. ..|+++.-. ..+.-|..+++.+..
T Consensus 2 ~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~~~--~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 72 (134)
T 3f6c_A 2 LNAIIIDDHP-----LAIAAIRNLLIKNDI--EILAELTEG--GSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQ 72 (134)
T ss_dssp EEEEEECCCH-----HHHHHHHHHHHHTTE--EEEEEESSS--TTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTT
T ss_pred eEEEEEcCCH-----HHHHHHHHHHhhCCc--EEEEEcCCH--HHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcC
Confidence 3566666532 445667777766542 222 22222 44444443 467776643 344455666665543
Q ss_pred -CCcEEEeC-CCCC--ccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 -GAIPIAHN-SAGP--KMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 -G~PvI~~~-~~~~--~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|... .... ..+.... |..+++.. +.+++.++|..++.
T Consensus 73 ~~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~kp~~~~~l~~~i~~~~~ 119 (134)
T 3f6c_A 73 YSGIIIIVSAKNDHFYGKHCADA---GANGFVSKKEGMNNIIAAIEAAKN 119 (134)
T ss_dssp CCSEEEEEECC---CTHHHHHHT---TCSEEEEGGGCTHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCCChHHHHHHHHh---CCCEEEeCCCCHHHHHHHHHHHHC
Confidence 56676533 2221 1122333 56677764 99999999999886
No 317
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=29.71 E-value=2.6e+02 Score=24.44 Aligned_cols=35 Identities=0% Similarity=-0.037 Sum_probs=18.8
Q ss_pred ccccceEEEecCCCCCCCCcchhhHH-HHHHhhhhCCCCceEEEc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWC-AVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~-l~~~L~~~g~~~~v~~~~ 74 (464)
.+++|||+++- ....... .++.|.+.. +++++.+.
T Consensus 3 ~M~~~~igiIG--------~G~~g~~~~~~~l~~~~-~~~l~av~ 38 (308)
T 3uuw_A 3 AMKNIKMGMIG--------LGSIAQKAYLPILTKSE-RFEFVGAF 38 (308)
T ss_dssp --CCCEEEEEC--------CSHHHHHHTHHHHTSCS-SSEEEEEE
T ss_pred ccccCcEEEEe--------cCHHHHHHHHHHHHhCC-CeEEEEEE
Confidence 34568999982 2333332 566676642 36766444
No 318
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=29.68 E-value=84 Score=28.13 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=42.7
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGA 380 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~ 380 (464)
|+++++-+.+.. .+..++.+++++. . ..++.++++ .+|+++..+....-.-.+.+++..|+
T Consensus 26 ~~~~l~av~d~~-------~~~~~~~~~~~~~----~------~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk 88 (331)
T 4hkt_A 26 ADARLVAVADAF-------PAAAEAIAGAYGC----E------VRTIDAIEAAADIDAVVICTPTDTHADLIERFARAGK 88 (331)
T ss_dssp TTEEEEEEECSS-------HHHHHHHHHHTTC----E------ECCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEECCC-------HHHHHHHHHHhCC----C------cCCHHHHhcCCCCCEEEEeCCchhHHHHHHHHHHcCC
Confidence 477877555432 1455666666653 2 145666677 78988776544433345688999999
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
+|++-.
T Consensus 89 ~v~~EK 94 (331)
T 4hkt_A 89 AIFCEK 94 (331)
T ss_dssp EEEECS
T ss_pred cEEEec
Confidence 999854
No 319
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=29.52 E-value=1.5e+02 Score=26.44 Aligned_cols=42 Identities=12% Similarity=-0.107 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCCCC
Q 012436 323 QSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDE 366 (464)
Q Consensus 323 ~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~~e 366 (464)
..+++.+.++|++ |.-...+..+++.+.++. .|++++..+..
T Consensus 48 ~~v~~~A~~~gIp--v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ 91 (314)
T 3tqq_A 48 SPVKEIARQNEIP--IIQPFSLRDEVEQEKLIAMNADVMVVVAYGL 91 (314)
T ss_dssp CHHHHHHHHTTCC--EECCSCSSSHHHHHHHHTTCCSEEEEESCCS
T ss_pred CHHHHHHHHcCCC--EECcccCCCHHHHHHHHhcCCCEEEEcCccc
Confidence 3567788888876 333334444566666654 56666654433
No 320
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=29.40 E-value=1.6e+02 Score=21.09 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=57.2
Q ss_pred EEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHH-----
Q 012436 306 RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMA----- 377 (464)
Q Consensus 306 ~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a----- 377 (464)
++.++.+.+ ...+.++...++.|. .+... -+.++..+.+.. .|+++.-.. .+.-|..+++.+.
T Consensus 4 ~ilivdd~~-----~~~~~l~~~l~~~g~--~v~~~--~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 74 (127)
T 2jba_A 4 RILVVEDEA-----PIREMVCFVLEQNGF--QPVEA--EDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMT 74 (127)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHHTTC--EEEEE--CSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTT
T ss_pred EEEEEcCCH-----HHHHHHHHHHHHCCc--eEEEe--CCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCccc
Confidence 566666542 344566666665543 23322 233555555543 477665432 3334566666664
Q ss_pred hCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 AGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 ~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.++|+|.-...............|..+++.. +.+++.+++..++.
T Consensus 75 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 75 RDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp TTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 3577776432221111111111155677664 99999999988765
No 321
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=29.39 E-value=1.5e+02 Score=27.03 Aligned_cols=80 Identities=11% Similarity=-0.009 Sum_probs=49.3
Q ss_pred CcE--EEEEeccCCC--CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCC-CCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 012436 269 YPA--IISVAQFRPE--KAHPLQLEAFSVALRKLDADLPRPRLQFVGSC-RNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (464)
Q Consensus 269 ~~~--i~~~G~~~~~--K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~-~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 343 (464)
+.. +.|+|-+... .=..-++.++..+ ++++.+++.. .-..+++..+.+++.+++.|. .+.+.
T Consensus 190 glkvvva~vGDl~~~~nrva~Sl~~~~~~~---------G~~v~~~~P~~~~~~~~~~~~~~~~~a~~~g~--~v~~~-- 256 (359)
T 1zq6_A 190 GKKYVLTWTYHPKPLNTAVANSALTIATRM---------GMDVTLLCPTPDYILDERYMDWAAQNVAESGG--SLQVS-- 256 (359)
T ss_dssp TCEEEEEECCCSSCCCSHHHHHHHHHHHHT---------TCEEEEECSSGGGCCCHHHHHHHHHHHHHHSC--EEEEE--
T ss_pred CCeeEEEEEecccccccchHHHHHHHHHHc---------CCEEEEEcCccccCCCHHHHHHHHHHHHHcCC--eEEEE--
Confidence 355 8999976432 2234445555544 7899999865 223333555666666666652 34433
Q ss_pred CChhHHHHHHhcCcEEEEcCC
Q 012436 344 LLYRDLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 344 ~~~~~~~~~l~~ad~~v~ps~ 364 (464)
.++.+.+..||++....+
T Consensus 257 ---~d~~eav~~aDvVyt~~w 274 (359)
T 1zq6_A 257 ---HDIDSAYAGADVVYAKSW 274 (359)
T ss_dssp ---CCHHHHHTTCSEEEEECC
T ss_pred ---CCHHHHhcCCCEEEECCc
Confidence 355678999998877654
No 322
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=29.36 E-value=1.2e+02 Score=27.11 Aligned_cols=57 Identities=9% Similarity=0.162 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEe-cCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFF-HPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~-~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+..++.. .+-+ ++|++. |+.. |- .+++..++.++...| .+|.+.++..
T Consensus 149 tQaLaDl~Ti~e~~g~-~~l~-l~ia~a~~~~v---GD-~rva~Sl~~~~~~~G--~~v~~~~P~~ 206 (324)
T 1js1_X 149 LQSFADLITIEEYKKT-ARPK-VVMTWAPHPRP---LP-QAVPNSFAEWMNATD--YEFVITHPEG 206 (324)
T ss_dssp HHHHHHHHHHHHHCSS-SSCE-EEEECCCCSSC---CC-SHHHHHHHHHHHTSS--SEEEEECCTT
T ss_pred HHHHHHHHHHHHHcCC-CCee-EEEEEEccccc---CC-cchHHHHHHHHHHCC--CEEEEeCCcc
Confidence 6899999988777521 0224 777773 2322 33 799999999999998 8888888754
No 323
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=29.24 E-value=27 Score=28.51 Aligned_cols=36 Identities=8% Similarity=0.006 Sum_probs=26.0
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhh-hCCCCceEE
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQE-ESPDLDCIV 72 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~-~g~~~~v~~ 72 (464)
|||+++..+ ..|-.++.+..+++.+.+ .|++++++-
T Consensus 2 mkilii~~S--~~g~t~~la~~i~~~l~~~~g~~v~~~~ 38 (198)
T 3b6i_A 2 AKVLVLYYS--MYGHIETMARAVAEGASKVDGAEVVVKR 38 (198)
T ss_dssp CEEEEEECC--SSSHHHHHHHHHHHHHHTSTTCEEEEEE
T ss_pred CeEEEEEeC--CCcHHHHHHHHHHHHHhhcCCCEEEEEE
Confidence 688888665 345678888889999988 785444433
No 324
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=29.20 E-value=1.1e+02 Score=27.67 Aligned_cols=40 Identities=8% Similarity=0.072 Sum_probs=27.9
Q ss_pred hHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 347 RDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 347 ~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
.++.++++ ..|+++..+....-.-.+.+|+..|++|++-.
T Consensus 55 ~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EK 96 (359)
T 3e18_A 55 ESYEAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEK 96 (359)
T ss_dssp SCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeC
Confidence 45666777 68888776544333334688999999999854
No 325
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=29.10 E-value=1.1e+02 Score=28.47 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=43.7
Q ss_pred CCcEEEE-EcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc-------CcEEEEcCCCCCCChHHHH
Q 012436 303 PRPRLQF-VGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG-------AVVGIHSMIDEHFGISVVE 374 (464)
Q Consensus 303 p~~~l~i-~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~-------ad~~v~ps~~e~~~~~~~E 374 (464)
++++++- +.+.. .+..++.++++|++.. .. ..++.++++. .|+++..+....-.-.+.+
T Consensus 63 ~~~~lva~v~d~~-------~~~a~~~a~~~g~~~~-~~-----~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~ 129 (417)
T 3v5n_A 63 DHYELVAGALSST-------PEKAEASGRELGLDPS-RV-----YSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKE 129 (417)
T ss_dssp SCEEEEEEECCSS-------HHHHHHHHHHHTCCGG-GB-----CSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHH
T ss_pred CCcEEEEEEeCCC-------HHHHHHHHHHcCCCcc-cc-----cCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHH
Confidence 4677763 43332 1556777777776421 11 1445555655 8988776544443445788
Q ss_pred HHHhCCcEEEeC
Q 012436 375 YMAAGAIPIAHN 386 (464)
Q Consensus 375 a~a~G~PvI~~~ 386 (464)
|+..|++|++-.
T Consensus 130 al~aGkhVl~EK 141 (417)
T 3v5n_A 130 FLKRGIHVICDK 141 (417)
T ss_dssp HHTTTCEEEEES
T ss_pred HHhCCCeEEEEC
Confidence 999999999854
No 326
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=29.06 E-value=1e+02 Score=27.38 Aligned_cols=69 Identities=10% Similarity=0.013 Sum_probs=42.1
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHH-hcCcEEEEcCCCCCCChHHHHHHHhCCc
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLL-GGAVVGIHSMIDEHFGISVVEYMAAGAI 381 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l-~~ad~~v~ps~~e~~~~~~~Ea~a~G~P 381 (464)
++++++.+.+.. .+..++.+++++.. ... .++.+++ ..+|+++..+......-.+.+++..|++
T Consensus 24 ~~~~~~~v~d~~-------~~~~~~~~~~~~~~---~~~-----~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~gk~ 88 (325)
T 2ho3_A 24 GEYQLVAIYSRK-------LETAATFASRYQNI---QLF-----DQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKH 88 (325)
T ss_dssp TSEEEEEEECSS-------HHHHHHHGGGSSSC---EEE-----SCHHHHHTSSCSEEEECSCGGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEEeCC-------HHHHHHHHHHcCCC---eEe-----CCHHHHhCCCCCEEEEeCChHHHHHHHHHHHHcCCc
Confidence 467776555432 14455666666531 111 3444556 6789888775544434456789999999
Q ss_pred EEEeC
Q 012436 382 PIAHN 386 (464)
Q Consensus 382 vI~~~ 386 (464)
|++-.
T Consensus 89 V~~EK 93 (325)
T 2ho3_A 89 VILEK 93 (325)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99864
No 327
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=29.05 E-value=29 Score=29.28 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=28.1
Q ss_pred HhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 22 LASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 22 ~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
|++.+.+.-..++++|+++. .+..|-++.++..+++.| +.| +.+.++.
T Consensus 28 ~~~~l~~~~~~~~~kv~IlY--gS~tGnte~~A~~La~~l-~~g--~~v~v~~ 75 (219)
T 3hr4_A 28 FACMLMRKTMASRVRVTILF--ATETGKSEALAWDLGALF-SCA--FNPKVVC 75 (219)
T ss_dssp HHHHHHHHHHHTSCEEEEEE--ECSSSHHHHHHHHHHHHH-TTT--SEEEEEE
T ss_pred HHHHHHHHHHhcCCcEEEEE--ECCchHHHHHHHHHHHHH-HcC--CCeEEEE
Confidence 33344333334445666552 333378999999999988 467 4444443
No 328
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=29.00 E-value=94 Score=22.94 Aligned_cols=107 Identities=14% Similarity=0.197 Sum_probs=60.3
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCC--CCChHHHHHHHh
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDE--HFGISVVEYMAA 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e--~~~~~~~Ea~a~ 378 (464)
..+++++.+.+ ...+.++...++.|. .|.... +.++..+.+.. .|++++-. ..+ .-|..+++.+..
T Consensus 6 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~ 76 (136)
T 3kto_A 6 HPIIYLVDHQK-----DARAALSKLLSPLDV--TIQCFA--SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVK 76 (136)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHTTSSS--EEEEES--SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHH
T ss_pred CCeEEEEcCCH-----HHHHHHHHHHHHCCc--EEEEeC--CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHh
Confidence 45777777543 445666666665543 233332 33555555544 46665543 233 345556655543
Q ss_pred ---CCcEEEeCCCCCcc---ceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAHNSAGPKM---DIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~~~~~~~~---~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|......... +.... |..+++.. +.+++.++|.++..
T Consensus 77 ~~~~~~ii~~s~~~~~~~~~~~~~~---ga~~~l~KP~~~~~l~~~i~~~~~ 125 (136)
T 3kto_A 77 RGFHLPTIVMASSSDIPTAVRAMRA---SAADFIEKPFIEHVLVHDVQQIIN 125 (136)
T ss_dssp TTCCCCEEEEESSCCHHHHHHHHHT---TCSEEEESSBCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHc---ChHHheeCCCCHHHHHHHHHHHHh
Confidence 67777643222211 22333 56677774 99999999998876
No 329
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=28.65 E-value=36 Score=28.26 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=24.7
Q ss_pred cceEEEecCCCCC-CCCcchhhHHHHHHhhhh--CCCCceE
Q 012436 34 TTSVAFFHPNTND-GGGGERVLWCAVKAIQEE--SPDLDCI 71 (464)
Q Consensus 34 ~mkI~~~~~~~~~-~GG~~~~~~~l~~~L~~~--g~~~~v~ 71 (464)
+|||+++..+... +|=....+..+++.+.+. |++++++
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~ 41 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARR 41 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4799998777654 223455667778888887 6444433
No 330
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=28.44 E-value=84 Score=27.39 Aligned_cols=86 Identities=9% Similarity=-0.062 Sum_probs=0.0
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCC---CCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESP---DLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRK 109 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (464)
.+.+|+++ +..... -....+..+-+.+.+.|+ ++.+.+.....+
T Consensus 1 ~~~~Igvi-~~~~~p-~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~------------------------------- 47 (295)
T 3lft_A 1 SNAKIGVL-QFVSHP-SLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGD------------------------------- 47 (295)
T ss_dssp CCEEEEEE-ECSCCH-HHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTC-------------------------------
T ss_pred CceEEEEE-EccCCh-hHHHHHHHHHHHHHHcCCCCCceEEEEecCCCC-------------------------------
Q ss_pred ccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccchhhhccCceEEEE
Q 012436 110 WIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICY 167 (464)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~ 167 (464)
........+.+.+.++|.|+...............++|+|+.
T Consensus 48 ----------------~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~~~~~iPvV~~ 89 (295)
T 3lft_A 48 ----------------QSKVATMSKQLVANGNDLVVGIATPAAQGLASATKDLPVIMA 89 (295)
T ss_dssp ----------------HHHHHHHHHHHTTSSCSEEEEESHHHHHHHHHHCSSSCEEEE
T ss_pred ----------------HHHHHHHHHHHHhcCCCEEEECCcHHHHHHHHcCCCCCEEEE
No 331
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=28.29 E-value=1.3e+02 Score=26.74 Aligned_cols=55 Identities=9% Similarity=0.028 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhh-CCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEE-SPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~-g~~~~v~~~~~~~ 77 (464)
+|.+++++-+..++ ++-+.+||+|+-+. --.+++..++.++... | .+|.+.++..
T Consensus 131 tQ~LaDl~Ti~e~~---g~l~gl~va~vGD~-----~~~rva~Sl~~~~~~~~g--~~v~~~~P~~ 186 (299)
T 1pg5_A 131 TQAVIDIYTINKHF---NTIDGLVFALLGDL-----KYARTVNSLLRILTRFRP--KLVYLISPQL 186 (299)
T ss_dssp HHHHHHHHHHHHHH---SCSTTCEEEEEECC-----SSCHHHHHHHHHGGGSCC--SEEEEECCGG
T ss_pred HHHHHHHHHHHHHh---CCcCCcEEEEECCC-----CCCchHHHHHHHHHhCCC--CEEEEECCch
Confidence 68999999887765 34467899997431 2257889999999999 8 8888888754
No 332
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=28.11 E-value=1.8e+02 Score=21.39 Aligned_cols=108 Identities=8% Similarity=-0.004 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc-cCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHHh-
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY-KNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMAA- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~-g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a~- 378 (464)
..+++++.+.+ ...+.+....++.+ .+... -.-+.++..+.+.. .|++++-.. .+.-|..+++.+..
T Consensus 9 ~~~iLivdd~~-----~~~~~l~~~L~~~~---~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 80 (143)
T 2qv0_A 9 KMKVIIVEDEF-----LAQQELSWLINTHS---QMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQF 80 (143)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHHHHS---CCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTS
T ss_pred ceEEEEEcCCH-----HHHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcc
Confidence 56788887643 44566666666542 12222 12233566666554 577776533 34445666776653
Q ss_pred --CCcEEE-eCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 --GAIPIA-HNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 --G~PvI~-~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..|+|. +.......+.... |..+++.. +.+++.++|..++.
T Consensus 81 ~~~~~ii~~s~~~~~~~~~~~~---g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 81 AHKPFIVFITAWKEHAVEAFEL---EAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp TTCCEEEEEESCCTTHHHHHHT---TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHhC---CcceEEeCCCCHHHHHHHHHHHHH
Confidence 344543 4433222223334 56677764 99999999998876
No 333
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=28.04 E-value=1.2e+02 Score=27.48 Aligned_cols=65 Identities=12% Similarity=-0.085 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc-CcEEEEcCCCCCCChHHHHHHH-hCCcEEEeCCC
Q 012436 320 ERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG-AVVGIHSMIDEHFGISVVEYMA-AGAIPIAHNSA 388 (464)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~-ad~~v~ps~~e~~~~~~~Ea~a-~G~PvI~~~~~ 388 (464)
+....|.+.+++.|+. .+.-..+.+.+.-+-.- +|++=.+|. +-.-..++++++ .|+|||.+.-.
T Consensus 91 e~~~~L~~~~~~~Gi~---~~st~~d~~svd~l~~~~v~~~KI~S~-~~~n~~LL~~va~~gkPviLstGm 157 (349)
T 2wqp_A 91 EDEIKLKEYVESKGMI---FISTLFSRAAALRLQRMDIPAYKIGSG-ECNNYPLIKLVASFGKPIILSTGM 157 (349)
T ss_dssp HHHHHHHHHHHHTTCE---EEEEECSHHHHHHHHHHTCSCEEECGG-GTTCHHHHHHHHTTCSCEEEECTT
T ss_pred HHHHHHHHHHHHhCCe---EEEeeCCHHHHHHHHhcCCCEEEECcc-cccCHHHHHHHHhcCCeEEEECCC
Confidence 5567788888887763 33333455555444333 677766653 444556676665 68898887643
No 334
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=27.79 E-value=2.4e+02 Score=24.99 Aligned_cols=43 Identities=21% Similarity=0.157 Sum_probs=26.8
Q ss_pred cccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 30 RRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 30 ~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
++.+...|+++.+..... =....+..+.+++.+.| +++.+...
T Consensus 64 ~~~~~~~Ig~i~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~ 106 (344)
T 3kjx_A 64 ASNRVNLVAVIIPSLSNM-VFPEVLTGINQVLEDTE--LQPVVGVT 106 (344)
T ss_dssp TTSCCSEEEEEESCSSSS-SHHHHHHHHHHHHTSSS--SEEEEEEC
T ss_pred hcCCCCEEEEEeCCCCcH-HHHHHHHHHHHHHHHCC--CEEEEEeC
Confidence 344567899998876543 24455556666777777 56555443
No 335
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=27.75 E-value=69 Score=25.65 Aligned_cols=66 Identities=11% Similarity=0.016 Sum_probs=38.0
Q ss_pred HHHHHhcCcEEEEcCCCCCCChH--HHHHHH-------hCCcEEEeCCCCCccceecccC--C---ccceeecCCHHHHH
Q 012436 349 LVKLLGGAVVGIHSMIDEHFGIS--VVEYMA-------AGAIPIAHNSAGPKMDIVLEED--G---QQTGFLAQNAEEYA 414 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps~~e~~~~~--~~Ea~a-------~G~PvI~~~~~~~~~~~v~~~~--~---~~~g~~~~~~~~la 414 (464)
-.-....||.+|.- ..++|.- ++|++. .++| +..+ +.+..++..+. . ...-.+++|++++.
T Consensus 91 k~~~~~~sda~ivl--pGG~GTl~El~e~lt~~q~g~~~~kP-vll~--g~~~~l~~~~gfi~~~~~~~~~~~~~~~e~~ 165 (171)
T 1weh_A 91 IGRLLDLGAGYLAL--PGGVGTLAELVLAWNLLYLRRGVGRP-LAVD--PYWLGLLKAHGEIAPEDVGLLRVVADEEDLR 165 (171)
T ss_dssp HHHHHHHEEEEEEC--SCCHHHHHHHHHHHHHHHTCSSCSCC-EEEC--GGGGGTCCCBTTBCHHHHTTSEECCSHHHHH
T ss_pred HHHHHHhCCEEEEe--CCCccHHHHHHHHHHHHHhCccCCCe-EEEC--cchhhhHhhcCCCChhhcCeEEEeCCHHHHH
Confidence 33445568877654 2456655 789998 6899 7777 44344431100 0 01123446888888
Q ss_pred HHHHH
Q 012436 415 DAIVK 419 (464)
Q Consensus 415 ~~i~~ 419 (464)
+.+.+
T Consensus 166 ~~l~~ 170 (171)
T 1weh_A 166 RFLRS 170 (171)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87754
No 336
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=27.70 E-value=2.1e+02 Score=24.68 Aligned_cols=87 Identities=8% Similarity=-0.119 Sum_probs=0.0
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEE-EcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIV-YTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRK 109 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (464)
++++.+|+++.+..... =....+..+.+++.+.| +++.+ ..... +.....+....
T Consensus 1 ~s~~~~I~~i~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~~~~--~~~~~~~~i~~------------------- 56 (305)
T 3g1w_A 1 MSLNETYMMITFQSGMD-YWKRCLKGFEDAAQALN--VTVEYRGAAQY--DIQEQITVLEQ------------------- 56 (305)
T ss_dssp ----CEEEEEESSTTST-HHHHHHHHHHHHHHHHT--CEEEEEECSSS--CHHHHHHHHHH-------------------
T ss_pred CCCCceEEEEEccCCCh-HHHHHHHHHHHHHHHcC--CEEEEeCCCcC--CHHHHHHHHHH-------------------
Q ss_pred ccccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch----hhhccCceEEEE
Q 012436 110 WIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP----LARIFGCRVICY 167 (464)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~----~~~~~~~p~v~~ 167 (464)
+...++|.++.......... .+...++|+|+.
T Consensus 57 --------------------------l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 57 --------------------------AIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLF 92 (305)
T ss_dssp --------------------------HHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE
T ss_pred --------------------------HHHhCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEE
No 337
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=27.68 E-value=1.7e+02 Score=21.05 Aligned_cols=106 Identities=12% Similarity=0.110 Sum_probs=62.2
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a~-- 378 (464)
..+++++.+.+ ...+.+++..++.|. .|.... +.++..+.+.. .|++++-. ..+.-|..+++.+..
T Consensus 6 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 6 SKRILVVDDDQ-----AMAAAIERVLKRDHW--QVEIAH--NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred CccEEEEECCH-----HHHHHHHHHHHHCCc--EEEEeC--CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 56777777543 445667777766543 344333 33666666643 57766543 344556667777653
Q ss_pred ---CCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..|+|.+..... .. .... |..+++.. +++++.++|.+...
T Consensus 77 ~~~~~~ii~~~~~~~-~~~~~~~~~---g~~~~l~kP~~~~~l~~~i~~~~~ 124 (132)
T 3lte_A 77 VANQPKILVVSGLDK-AKLQQAVTE---GADDYLEKPFDNDALLDRIHDLVN 124 (132)
T ss_dssp CSSCCEEEEECCSCS-HHHHHHHHH---TCCEEECSSCCHHHHHHHHHHHHC
T ss_pred ccCCCeEEEEeCCCh-HHHHHHHHh---ChHHHhhCCCCHHHHHHHHHHHcC
Confidence 345555543322 22 2233 56667764 99999999998876
No 338
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=27.35 E-value=28 Score=28.30 Aligned_cols=37 Identities=8% Similarity=0.070 Sum_probs=26.6
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhh-hCCCCceEEEc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQE-ESPDLDCIVYT 74 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~-~g~~~~v~~~~ 74 (464)
+|||+++..+ ..|-.++++..+++.+.+ .| +++.++.
T Consensus 4 M~kiliiy~S--~~GnT~~~a~~i~~~l~~~~g--~~v~~~~ 41 (188)
T 2ark_A 4 MGKVLVIYDT--RTGNTKKMAELVAEGARSLEG--TEVRLKH 41 (188)
T ss_dssp CEEEEEEECC--SSSHHHHHHHHHHHHHHTSTT--EEEEEEE
T ss_pred CCEEEEEEEC--CCcHHHHHHHHHHHHHhhcCC--CeEEEEE
Confidence 4689888655 345788888899999988 78 4544443
No 339
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=27.24 E-value=1.2e+02 Score=28.02 Aligned_cols=62 Identities=15% Similarity=-0.053 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc-CcEEEEcCCCCCCChHHHHHHH-hCCcEEEeCC
Q 012436 322 LQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG-AVVGIHSMIDEHFGISVVEYMA-AGAIPIAHNS 387 (464)
Q Consensus 322 ~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~-ad~~v~ps~~e~~~~~~~Ea~a-~G~PvI~~~~ 387 (464)
...|.+.+++.|+. .+.-..+.+.+.-+-.- +|++=.+|. +-.-..++++++ .|+|||.+.-
T Consensus 103 ~~~L~~~~~~~Gi~---~~stpfD~~svd~l~~~~vd~~KIgS~-~~~N~pLL~~va~~gKPViLStG 166 (385)
T 1vli_A 103 ILPLLDYCREKQVI---FLSTVCDEGSADLLQSTSPSAFKIASY-EINHLPLLKYVARLNRPMIFSTA 166 (385)
T ss_dssp HHHHHHHHHHTTCE---EECBCCSHHHHHHHHTTCCSCEEECGG-GTTCHHHHHHHHTTCSCEEEECT
T ss_pred HHHHHHHHHHcCCc---EEEccCCHHHHHHHHhcCCCEEEECcc-cccCHHHHHHHHhcCCeEEEECC
Confidence 46677777776642 33333444444433332 566655543 334455666554 5788877763
No 340
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=27.24 E-value=2.5e+02 Score=23.90 Aligned_cols=39 Identities=5% Similarity=0.051 Sum_probs=27.1
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
+.+|+++.+..... -...++..+-+++.+.| +++.++..
T Consensus 15 ~~~Igvi~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~ 53 (298)
T 3tb6_A 15 NKTIGVLTTYISDY-IFPSIIRGIESYLSEQG--YSMLLTST 53 (298)
T ss_dssp CCEEEEEESCSSST-THHHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred CceEEEEeCCCCch-HHHHHHHHHHHHHHHCC--CEEEEEeC
Confidence 37899998876544 35566667777788888 66666554
No 341
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=27.22 E-value=1.7e+02 Score=26.68 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhcccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 13 TAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
+|.+++++-+-.++-+. .-+.+||+++-.+.+.. ...+++..++..+...| .++.++++..
T Consensus 170 tQaL~Dl~Ti~e~~G~~-dl~g~kv~~~~~~~gd~-~~~~Va~S~~~~~~~~g--~~v~~~~P~~ 230 (359)
T 3kzn_A 170 CQELAHALALQEHFGTP-DLRGKKYVLTWTYHPKP-LNTAVANSALTIATRMG--MDVTLLCPTP 230 (359)
T ss_dssp HHHHHHHHHHHHHHTSS-CCTTCEEEEEECCCSSC-CCSHHHHHHHHHHHHTT--CEEEEECSSG
T ss_pred hHHHHHHHHHHHHcCCc-cccCCeEEEEEeecCCc-cccchhhhhHHHHHhcc--ccEEEEeccc
Confidence 68999999887766321 13457888776554333 46788889999999999 8888888753
No 342
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=26.96 E-value=1.9e+02 Score=21.40 Aligned_cols=107 Identities=9% Similarity=0.038 Sum_probs=61.5
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHH---
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMA--- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a--- 377 (464)
..++.++.+.+ ...+.++...++.|. .+.... +.++..+.+.. .|++++-. ..+.-|..+++.+.
T Consensus 14 ~~~iLivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~ 84 (143)
T 3m6m_D 14 SMRMLVADDHE-----ANRMVLQRLLEKAGH--KVLCVN--GAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQ 84 (143)
T ss_dssp -CEEEEECSSH-----HHHHHHHHHHHC--C--EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHH
T ss_pred cceEEEEeCCH-----HHHHHHHHHHHHcCC--eEEEeC--CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhch
Confidence 56788887543 445667777766553 343332 34666666654 67776643 34455666776663
Q ss_pred ----hCCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 ----AGAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 ----~G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|+.......+. .... |..+++.. +.+++.++|.++..
T Consensus 85 ~~~~~~~pii~~s~~~~~~~~~~~~~~---Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 85 ASGMRYTPVVVLSADVTPEAIRACEQA---GARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp HTTCCCCCEEEEESCCCHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHHHC-
T ss_pred hccCCCCeEEEEeCCCCHHHHHHHHHc---ChhheeeCCCCHHHHHHHHHHHHH
Confidence 1367776543322122 2223 56677775 99999999998875
No 343
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=26.93 E-value=1.8e+02 Score=21.09 Aligned_cols=107 Identities=16% Similarity=0.100 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEcc-CCChhHHHHHHh--cCcEEEEcCC-CCCCChHHHHHHHh--
Q 012436 305 PRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK-NLLYRDLVKLLG--GAVVGIHSMI-DEHFGISVVEYMAA-- 378 (464)
Q Consensus 305 ~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~~~~~~~~~l~--~ad~~v~ps~-~e~~~~~~~Ea~a~-- 378 (464)
.+++++.+.+ ...+.++...+..+ .+.... .-+..+..+.+. ..|++++-.. .+.-|..+++.+..
T Consensus 4 ~~Ilivdd~~-----~~~~~l~~~l~~~~---~~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~ 75 (133)
T 3b2n_A 4 TSLIIAEDQN-----MLRQAMVQLIKLHG---DFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKH 75 (133)
T ss_dssp EEEEEECSCH-----HHHHHHHHHHHHHS---SEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred eEEEEECCCH-----HHHHHHHHHHhhCC---CcEEEEEcCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHC
Confidence 4566665432 44456666665543 122222 223355555554 3688776533 33345666666643
Q ss_pred -CCcEEEe-CCCCC--ccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 -GAIPIAH-NSAGP--KMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 -G~PvI~~-~~~~~--~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|.- ..... ..+.... |..+++.. +++++.++|..++.
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~~~~---ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 76 LNIKVIIVTTFKRPGYFEKAVVN---DVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHT---TCSEEEETTSCHHHHHHHHHHHHC
T ss_pred CCCcEEEEecCCCHHHHHHHHHc---CCcEEEECCCCHHHHHHHHHHHHc
Confidence 5777764 33221 1122233 56677764 99999999998876
No 344
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=26.91 E-value=86 Score=27.96 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=40.2
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcE
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIP 382 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pv 382 (464)
|+++++ +.+.. .+..++.+++++.+. .+ .+..++. -..+|+++..+......-.+.+++..|++|
T Consensus 26 ~~~~l~-v~d~~-------~~~~~~~a~~~g~~~--~~---~~~~~~l--~~~~D~V~i~tp~~~h~~~~~~al~~Gk~V 90 (323)
T 1xea_A 26 PDIELV-LCTRN-------PKVLGTLATRYRVSA--TC---TDYRDVL--QYGVDAVMIHAATDVHSTLAAFFLHLGIPT 90 (323)
T ss_dssp TTEEEE-EECSC-------HHHHHHHHHHTTCCC--CC---SSTTGGG--GGCCSEEEECSCGGGHHHHHHHHHHTTCCE
T ss_pred CCceEE-EEeCC-------HHHHHHHHHHcCCCc--cc---cCHHHHh--hcCCCEEEEECCchhHHHHHHHHHHCCCeE
Confidence 477888 54432 145566667766431 01 1222321 267898887754443334456899999999
Q ss_pred EEeC
Q 012436 383 IAHN 386 (464)
Q Consensus 383 I~~~ 386 (464)
++-.
T Consensus 91 ~~EK 94 (323)
T 1xea_A 91 FVDK 94 (323)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8754
No 345
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=26.82 E-value=32 Score=26.29 Aligned_cols=37 Identities=0% Similarity=-0.168 Sum_probs=24.9
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLD 69 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~ 69 (464)
.++|++|+....+.+.........++....+.|+++.
T Consensus 14 ~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~ 50 (134)
T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETS 50 (134)
T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEE
T ss_pred ccceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 4578888877654333444566778888888896555
No 346
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=26.70 E-value=67 Score=23.98 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=22.3
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
.|+|+++ |+...-..+++.|.+.| ++|+++..
T Consensus 4 ~m~i~Ii--------G~G~iG~~~a~~L~~~g--~~v~~~d~ 35 (140)
T 1lss_A 4 GMYIIIA--------GIGRVGYTLAKSLSEKG--HDIVLIDI 35 (140)
T ss_dssp -CEEEEE--------CCSHHHHHHHHHHHHTT--CEEEEEES
T ss_pred CCEEEEE--------CCCHHHHHHHHHHHhCC--CeEEEEEC
Confidence 5888887 23455567788999988 66777664
No 347
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=26.59 E-value=36 Score=29.77 Aligned_cols=38 Identities=5% Similarity=-0.080 Sum_probs=23.8
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceE
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCI 71 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~ 71 (464)
+|||+++..+....|=....+..+++.|.+.|++++++
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~ 39 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVES 39 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEE
Confidence 47999997776543223445566677788888544433
No 348
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=26.48 E-value=2.5e+02 Score=25.54 Aligned_cols=80 Identities=9% Similarity=0.034 Sum_probs=49.6
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
++..|.++|-+. ..=..-++.++..+ ++++.++|...-..+++..+..++.+++.|. ++.+. +
T Consensus 180 ~gl~ia~vGD~~-~~va~S~~~~~~~~---------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~--~v~~~-----~ 242 (358)
T 4h31_A 180 ADIQFAYLGDAR-NNVGNSLMVGAAKM---------GMDIRLVGPQAYWPDEELVAACQAIAKQTGG--KITLT-----E 242 (358)
T ss_dssp GGCEEEEESCTT-SHHHHHHHHHHHHH---------TCEEEEESCGGGSCCHHHHHHHHHHHHHHTC--EEEEE-----S
T ss_pred CceEEEecCCCC-cccchHHHHHHHhc---------CceEEEeCCcccCCCHHHHHHHHHHHHHcCC--cceec-----c
Confidence 347899999752 11123344444444 7899999974333344566667777766652 45443 4
Q ss_pred HHHHHHhcCcEEEEcCC
Q 012436 348 DLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~ 364 (464)
++.+.+..||++..-.+
T Consensus 243 d~~eav~~aDvvyt~~w 259 (358)
T 4h31_A 243 NVAEGVQGCDFLYTDVW 259 (358)
T ss_dssp CHHHHHTTCSEEEECCS
T ss_pred CHHHHhccCcEEEEEEE
Confidence 56778999998775443
No 349
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=26.42 E-value=1.9e+02 Score=21.18 Aligned_cols=107 Identities=10% Similarity=-0.027 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHH---
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMA--- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a--- 377 (464)
..+++++.+.+ ...+.++...+..|. .+.... +.++..+.+.. .|++++-.. .+.-|..+++.+.
T Consensus 10 ~~~iLivdd~~-----~~~~~l~~~L~~~~~--~v~~~~--~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~ 80 (140)
T 3c97_A 10 PLSVLIAEDND-----ICRLVAAKALEKCTN--DITVVT--NGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYE 80 (140)
T ss_dssp CCEEEEECCCH-----HHHHHHHHHHTTTCS--EEEEES--SHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHH
T ss_pred CceEEEEcCCH-----HHHHHHHHHHHHcCC--ceEEEC--CHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhh
Confidence 35777777543 344556666655432 344443 33666666554 588776543 3334556666554
Q ss_pred -----hCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 -----AGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 -----~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|.............. |..+++.. +.+++.++|..++.
T Consensus 81 ~~~~~~~~~ii~~s~~~~~~~~~~~---g~~~~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 81 RTHNTKRASIIAITADTIDDDRPGA---ELDEYVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp HHHTCCCCCCEEEESSCCSCCCCCS---SCSEEEESSCCHHHHHHHHHHHHC
T ss_pred hhcCCCceEEEEEeCccchhHHHhC---ChhheEeCCCCHHHHHHHHHHHhC
Confidence 24566654322221222222 55677774 99999999998876
No 350
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=26.42 E-value=1e+02 Score=25.83 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=41.1
Q ss_pred HHHHhcCcEEEEcCCCCCCChH--HHHHHHh------CCcEEEeCCCCCccceecccCC-ccce----------eecCCH
Q 012436 350 VKLLGGAVVGIHSMIDEHFGIS--VVEYMAA------GAIPIAHNSAGPKMDIVLEEDG-QQTG----------FLAQNA 410 (464)
Q Consensus 350 ~~~l~~ad~~v~ps~~e~~~~~--~~Ea~a~------G~PvI~~~~~~~~~~~v~~~~~-~~~g----------~~~~~~ 410 (464)
.-+...||.+|.- ..++|.- ++|++.. ++||+.-+..|.+..++.-... -..| .+++|+
T Consensus 104 ~~~~~~sda~Vvl--pGG~GTLdElfE~lt~~qlg~~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ 181 (215)
T 2a33_A 104 AEMAKHSDAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTA 181 (215)
T ss_dssp HHHHHTCSEEEEC--SCCHHHHHHHHHHHHHHHTTSCCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEESSH
T ss_pred HHHHHhCCEEEEe--CCCCchHHHHHHHHHHHHhCCCCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEeCCH
Confidence 3456678877653 2456644 6888776 8999999876654333220000 0112 345699
Q ss_pred HHHHHHHHHHH
Q 012436 411 EEYADAIVKII 421 (464)
Q Consensus 411 ~~la~~i~~l~ 421 (464)
+++.+.|.+..
T Consensus 182 ee~~~~l~~~~ 192 (215)
T 2a33_A 182 KELVKKLEEYA 192 (215)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhc
Confidence 99988887643
No 351
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=26.41 E-value=37 Score=28.28 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=25.4
Q ss_pred cceEEEecCCCC--CCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 34 TTSVAFFHPNTN--DGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 34 ~mkI~~~~~~~~--~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
+|||+++..+.. .++=....+..+++.+.+.+.+++|.++.
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~d 46 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELD 46 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 579999988776 33224455566777787772225554443
No 352
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=26.28 E-value=39 Score=27.74 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=24.4
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceE
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCI 71 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~ 71 (464)
+|||+++....... + .+....+++++.+.|+++++.
T Consensus 1 MmkiLiI~gsp~~~-~-s~l~~~l~~~~~~~g~ev~~~ 36 (192)
T 3f2v_A 1 MPKTLIILAHPNIS-Q-STVHKHWSDAVRQHTDRFTVH 36 (192)
T ss_dssp -CCEEEEECCTTGG-G-CSHHHHHHHHHTTCTTTEEEE
T ss_pred CCEEEEEEeCCCcc-H-HHHHHHHHHHHHhCCCeEEEE
Confidence 37899887655443 2 377888889998888554443
No 353
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=26.18 E-value=2.6e+02 Score=24.40 Aligned_cols=40 Identities=18% Similarity=0.016 Sum_probs=25.8
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
++.+|+++.+..... -.......+.+++.+.| +++.++..
T Consensus 2 ~~~~Igvi~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~ 41 (330)
T 3uug_A 2 DKGSVGIAMPTKSSA-RWIDDGNNIVKQLQEAG--YKTDLQYA 41 (330)
T ss_dssp CCCEEEEEECCSSST-HHHHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred CCcEEEEEeCCCcch-HHHHHHHHHHHHHHHcC--CEEEEeeC
Confidence 457899998876443 24445556667777778 66655553
No 354
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.16 E-value=1.9e+02 Score=21.15 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=58.4
Q ss_pred EEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcC-CCCCCChHHHHHHH---hC
Q 012436 306 RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSM-IDEHFGISVVEYMA---AG 379 (464)
Q Consensus 306 ~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps-~~e~~~~~~~Ea~a---~G 379 (464)
+++++.+.+ ...+.++...+..|. .|... -+.++..+.+. ..|++++-. ..+.-|..+++.+. ..
T Consensus 6 ~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~--~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~ 76 (137)
T 3cfy_A 6 RVLLVEDST-----SLAILYKQYVKDEPY--DIFHV--ETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIP 76 (137)
T ss_dssp EEEEECSCT-----THHHHHHHHTTTSSS--EEEEE--SSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCC
T ss_pred eEEEEeCCH-----HHHHHHHHHHHhcCc--eEEEe--CCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCC
Confidence 677777654 234556666554432 23322 23356655554 368777643 23444566666654 35
Q ss_pred CcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 380 AIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 380 ~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
+|+|.......... .... |..+++.. +.+++..+|..++.
T Consensus 77 ~~ii~ls~~~~~~~~~~~~~~---ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 77 TSVIIATAHGSVDLAVNLIQK---GAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp CEEEEEESSCCHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcHHHHHHHHHC---CccEEEeCCCCHHHHHHHHHHHHH
Confidence 67765432222111 2233 56677764 99999999988775
No 355
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=26.08 E-value=2e+02 Score=22.90 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=24.6
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLD 69 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~ 69 (464)
.+++|++++...-..+--...-...++..|.+.|+++.
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~ 45 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVV 45 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEE
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEe
Confidence 46789998876554332234445677888989995443
No 356
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=26.06 E-value=2.3e+02 Score=25.30 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=17.9
Q ss_pred HhhhcCCcEEEecccccccchhhh---ccCceEEE
Q 012436 135 ALCKFTPLYYFDTSGYAFTYPLAR---IFGCRVIC 166 (464)
Q Consensus 135 ~l~~~~~Dvv~~~~~~~~~~~~~~---~~~~p~v~ 166 (464)
++...++|+|+...........+. ..|+++++
T Consensus 66 ~l~~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~ 100 (346)
T 3cea_A 66 MIDTENIDAIFIVAPTPFHPEMTIYAMNAGLNVFC 100 (346)
T ss_dssp HHTTSCCSEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HhcCCCCCEEEEeCChHhHHHHHHHHHHCCCEEEE
Confidence 355567998886555443333222 45666654
No 357
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=26.04 E-value=3.9e+02 Score=24.57 Aligned_cols=105 Identities=12% Similarity=-0.037 Sum_probs=65.3
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCC--------CccHHHHHHHHHHHHhcCCCCcEEEccC
Q 012436 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN--------KSDEERLQSLKDKSIELKVDGNVEFYKN 343 (464)
Q Consensus 272 i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~--------~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 343 (464)
++.+|-.... ..+..++.+..+++. ...++..|.-.. .-..+....|.+.+++.|++ .+.-.
T Consensus 144 ~~Iigpcsve-s~e~a~~~a~~~k~a------Ga~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~---~~te~ 213 (385)
T 3nvt_A 144 VFVFGPCSVE-SYEQVAAVAESIKAK------GLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLG---VISEI 213 (385)
T ss_dssp EEEEECSBCC-CHHHHHHHHHHHHHT------TCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCE---EEEEC
T ss_pred EEEEEeCCcC-CHHHHHHHHHHHHHc------CCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCE---EEEec
Confidence 3444443333 788888888888775 455666554210 01235568888999998875 23333
Q ss_pred CChhHHHHHHhcCcEEEEcCC-CCCCChHHHH-HHHhCCcEEEeCCC
Q 012436 344 LLYRDLVKLLGGAVVGIHSMI-DEHFGISVVE-YMAAGAIPIAHNSA 388 (464)
Q Consensus 344 ~~~~~~~~~l~~ad~~v~ps~-~e~~~~~~~E-a~a~G~PvI~~~~~ 388 (464)
.+...+..+...+|++=.+|. ... ..+++ +...|+||+.+.-.
T Consensus 214 ~d~~~~~~l~~~vd~lkIgs~~~~n--~~LL~~~a~~gkPVilk~G~ 258 (385)
T 3nvt_A 214 VTPADIEVALDYVDVIQIGARNMQN--FELLKAAGRVDKPILLKRGL 258 (385)
T ss_dssp CSGGGHHHHTTTCSEEEECGGGTTC--HHHHHHHHTSSSCEEEECCT
T ss_pred CCHHHHHHHHhhCCEEEECcccccC--HHHHHHHHccCCcEEEecCC
Confidence 344566555555899888874 333 45554 55679999998744
No 358
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=25.95 E-value=1.9e+02 Score=21.05 Aligned_cols=107 Identities=11% Similarity=0.001 Sum_probs=61.1
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc---CcEEEEcCC-CCCCChHHHHHHHh
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG---AVVGIHSMI-DEHFGISVVEYMAA 378 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~---ad~~v~ps~-~e~~~~~~~Ea~a~ 378 (464)
+..+++++.+.+ ...+.++...++.|. .+.... +.++..+.+.. .|++++-.. .+.-|..+++.+..
T Consensus 14 ~~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~ 84 (138)
T 2b4a_A 14 QPFRVTLVEDEP-----SHATLIQYHLNQLGA--EVTVHP--SGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKE 84 (138)
T ss_dssp CCCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTT
T ss_pred CCCeEEEECCCH-----HHHHHHHHHHHHcCC--EEEEeC--CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 467777777543 445666666666553 343333 33666666654 677766433 33445667776653
Q ss_pred ---CCcEEEeC-CCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAHN-SAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~~-~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|... ....... ... -..+++.. +.+++..+|..++.
T Consensus 85 ~~~~~~ii~ls~~~~~~~~-~~~---~~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 85 QTKQPSVLILTTGRHELIE-SSE---HNLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SSSCCEEEEEESCC--CCC-CSS---SCEEEEESSCCHHHHHHHHHHTCC
T ss_pred hCCCCCEEEEECCCCCHHH-HHH---HHHheeeCCCCHHHHHHHHHHHHH
Confidence 57777643 2222122 221 13455553 99999999998876
No 359
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=25.90 E-value=1.8e+02 Score=24.71 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=21.5
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
...+||.++++... ||.. ..+++.|.+.| .+|++...
T Consensus 3 ~~~~~k~vlVTGas---~gIG---~~~a~~l~~~G--~~v~~~~~ 39 (264)
T 3i4f_A 3 LGRFVRHALITAGT---KGLG---KQVTEKLLAKG--YSVTVTYH 39 (264)
T ss_dssp ---CCCEEEETTTT---SHHH---HHHHHHHHHTT--CEEEEEES
T ss_pred cccccCEEEEeCCC---chhH---HHHHHHHHHCC--CEEEEEcC
Confidence 34456776664322 3444 45689999999 66666544
No 360
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B
Probab=25.89 E-value=1.5e+02 Score=22.59 Aligned_cols=49 Identities=6% Similarity=0.010 Sum_probs=34.6
Q ss_pred CCCCCcEEEEEecc--CCCCChHHHHHHHHHHHHHh-cCCCCCcEEEEEcCC
Q 012436 265 RSTEYPAIISVAQF--RPEKAHPLQLEAFSVALRKL-DADLPRPRLQFVGSC 313 (464)
Q Consensus 265 ~~~~~~~i~~~G~~--~~~K~~~~ll~a~~~l~~~~-~~~~p~~~l~i~G~~ 313 (464)
.....+.+-|.|.. ...||.+.+-+|++++.... +..++.+.+.|...+
T Consensus 13 e~~~~f~vkyLGsv~V~~p~G~dV~~~Ai~~i~~~~~~~~~~~v~l~Vs~~g 64 (136)
T 1wgu_A 13 ELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADAT 64 (136)
T ss_dssp CCCCCEEEEEEEEEECSCSSCSHHHHHHHHHHHHSSCTTTSCEEEEEEETTE
T ss_pred CCceEEEEEecCcEEcCCCCcHHHHHHHHHHHHhccccccCceEEEEEccCE
Confidence 34556889999986 56799999999999998753 222345566666553
No 361
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=25.39 E-value=2e+02 Score=26.53 Aligned_cols=85 Identities=20% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCC----------------------
Q 012436 287 QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL---------------------- 344 (464)
Q Consensus 287 ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~---------------------- 344 (464)
++.|++...... ++.+++++|.| ..-....+++..+|.. +|.+....
T Consensus 179 l~~A~~i~g~~l----~~~kVVv~GAG------aAG~~iAkll~~~G~~-~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~ 247 (388)
T 1vl6_A 179 FLNALKLTEKKI----EEVKVVVNGIG------AAGYNIVKFLLDLGVK-NVVAVDRKGILNENDPETCLNEYHLEIARI 247 (388)
T ss_dssp HHHHHHHHTCCT----TTCEEEEECCS------HHHHHHHHHHHHHTCC-EEEEEETTEECCTTSGGGCSSHHHHHHHHT
T ss_pred HHHHHHHhCCCC----CCcEEEEECCC------HHHHHHHHHHHhCCCC-eEEEEECCCcccCCCcccccCHHHHHHHHh
Q ss_pred -----ChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEE
Q 012436 345 -----LYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPI 383 (464)
Q Consensus 345 -----~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI 383 (464)
+..++.+.+..+|++|-.|...-+.--+++.|+ ..|+|
T Consensus 248 ~~~~~~~~~L~eav~~ADVlIG~Sap~l~t~emVk~Ma-~~pII 290 (388)
T 1vl6_A 248 TNPERLSGDLETALEGADFFIGVSRGNILKPEWIKKMS-RKPVI 290 (388)
T ss_dssp SCTTCCCSCHHHHHTTCSEEEECSCSSCSCHHHHTTSC-SSCEE
T ss_pred hhccCchhhHHHHHccCCEEEEeCCCCccCHHHHHhcC-CCCEE
No 362
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=25.34 E-value=1.8e+02 Score=24.92 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=24.4
Q ss_pred cccccccceEEEecCCCCCC-CCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 28 NARRNRTTSVAFFHPNTNDG-GGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 28 ~~~~~~~mkI~~~~~~~~~~-GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
..++++...|+++.+..... .=....+..+.+++.+.| +.+.++.
T Consensus 2 ~L~~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~~ 47 (288)
T 3gv0_A 2 SLRTGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQ--YHLVVTP 47 (288)
T ss_dssp -----CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSS--CEEEECC
T ss_pred CcccCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcC--CEEEEec
Confidence 34566778999998876421 123444555556666677 5655544
No 363
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=25.31 E-value=87 Score=28.24 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=43.9
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCCCCCCChHHHHHHHhCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMIDEHFGISVVEYMAAGA 380 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~~e~~~~~~~Ea~a~G~ 380 (464)
|+++++-+.+.. .+..++.++++++. +.. .+++.++++. .|+++..+....-.-.+.+++..|+
T Consensus 26 ~~~~l~av~d~~-------~~~~~~~~~~~g~~--~~~-----~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~Gk 91 (344)
T 3mz0_A 26 SGAEIVAVTDVN-------QEAAQKVVEQYQLN--ATV-----YPNDDSLLADENVDAVLVTSWGPAHESSVLKAIKAQK 91 (344)
T ss_dssp SSEEEEEEECSS-------HHHHHHHHHHTTCC--CEE-----ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEEcCC-------HHHHHHHHHHhCCC--Cee-----eCCHHHHhcCCCCCEEEECCCchhHHHHHHHHHHCCC
Confidence 477877555442 14566677776642 111 1456666766 8988776544433444678999999
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
+|++-.
T Consensus 92 ~vl~EK 97 (344)
T 3mz0_A 92 YVFCEK 97 (344)
T ss_dssp EEEECS
T ss_pred cEEEcC
Confidence 999854
No 364
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=25.15 E-value=1.6e+02 Score=25.23 Aligned_cols=62 Identities=8% Similarity=-0.008 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHhcCCCC---CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcC
Q 012436 284 HPLQLEAFSVALRKLDADLP---RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGA 356 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~~~~~p---~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~a 356 (464)
.+...+++..+.+.. | +...+++.+. .....+.+.+++.|+. .|.+.|+=......++++.-
T Consensus 172 ~~~~~~~~~~~l~~~----~~~~~~~ai~~~~d------~~a~g~~~al~~~g~~-di~vvg~d~~~~~~~~i~~~ 236 (291)
T 3l49_A 172 IQSAYSNVTDMLTKY----PNEGDVGAIWACWD------VPMIGATQALQAAGRT-DIRTYGVDGSPEFVEMVADP 236 (291)
T ss_dssp HHHHHHHHHHHHHHC----CSTTSCCEEEESSH------HHHHHHHHHHHHTTCC-SCEEEEEECCHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhC----CCcCCcCEEEECCC------chHHHHHHHHHHcCCC-CeEEEEecCCHHHHHHHHCC
Confidence 345556666666654 4 5666666543 2223445666777877 78888875445555665443
No 365
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=25.10 E-value=2.6e+02 Score=25.58 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=19.4
Q ss_pred HHhhhcCCcEEEecccccccchh---hhccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPL---ARIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~---~~~~~~p~v~ 166 (464)
+++.+.++|+|+..+.......+ +-..|+++++
T Consensus 58 ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~ 93 (387)
T 3moi_A 58 EMMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIV 93 (387)
T ss_dssp HHHHHSCCSEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCCceee
Confidence 44666789988855554433332 2256777665
No 366
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=25.05 E-value=2.2e+02 Score=24.48 Aligned_cols=88 Identities=13% Similarity=-0.048 Sum_probs=0.0
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWI 111 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (464)
+.+.+|+++.+..... -.......+.+++.+.| +++.++......+.....+....
T Consensus 1 ~~~~~Igvi~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~i~~--------------------- 56 (297)
T 3rot_A 1 MVRDKYYLITHGSQDP-YWTSLFQGAKKAAEELK--VDLQILAPPGANDVPKQVQFIES--------------------- 56 (297)
T ss_dssp --CCEEEEECSCCCSH-HHHHHHHHHHHHHHHHT--CEEEEECCSSSCCHHHHHHHHHH---------------------
T ss_pred CceEEEEEEecCCCCc-hHHHHHHHHHHHHHHhC--cEEEEECCCCcCCHHHHHHHHHH---------------------
Q ss_pred ccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch----hhhccCceEEEE
Q 012436 112 EESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP----LARIFGCRVICY 167 (464)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~----~~~~~~~p~v~~ 167 (464)
+...++|.|+.......... .++..++|+|..
T Consensus 57 ------------------------l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~ 92 (297)
T 3rot_A 57 ------------------------ALATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAV 92 (297)
T ss_dssp ------------------------HHHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEE
T ss_pred ------------------------HHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEE
No 367
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=24.83 E-value=4.8e+02 Score=25.21 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=24.8
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
+++|.++ |..++...+++.|.+.| ++|+++..+
T Consensus 127 ~~hviI~--------G~g~~g~~la~~L~~~~--~~vvvid~~ 159 (565)
T 4gx0_A 127 RGHILIF--------GIDPITRTLIRKLESRN--HLFVVVTDN 159 (565)
T ss_dssp CSCEEEE--------SCCHHHHHHHHHTTTTT--CCEEEEESC
T ss_pred CCeEEEE--------CCChHHHHHHHHHHHCC--CCEEEEECC
Confidence 4566665 66788889999999998 667777654
No 368
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=24.77 E-value=1.3e+02 Score=27.00 Aligned_cols=68 Identities=6% Similarity=-0.045 Sum_probs=43.5
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGA 380 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~ 380 (464)
|+++++-+.+.. .+..++.+++++ +.. ..++.++++ .+|+++..+......-.+.+++..|+
T Consensus 27 ~~~~l~av~d~~-------~~~~~~~a~~~g----~~~-----~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk 90 (344)
T 3euw_A 27 PDLELVVIADPF-------IEGAQRLAEANG----AEA-----VASPDEVFARDDIDGIVIGSPTSTHVDLITRAVERGI 90 (344)
T ss_dssp TTEEEEEEECSS-------HHHHHHHHHTTT----CEE-----ESSHHHHTTCSCCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEECCC-------HHHHHHHHHHcC----Cce-----eCCHHHHhcCCCCCEEEEeCCchhhHHHHHHHHHcCC
Confidence 577777555432 145566666654 121 146667787 78988876544433444688999999
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
+|++-.
T Consensus 91 ~v~~EK 96 (344)
T 3euw_A 91 PALCEK 96 (344)
T ss_dssp CEEECS
T ss_pred cEEEEC
Confidence 999854
No 369
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=24.68 E-value=3.7e+02 Score=23.84 Aligned_cols=39 Identities=18% Similarity=-0.026 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCC
Q 012436 324 SLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMI 364 (464)
Q Consensus 324 ~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~ 364 (464)
.+++.+.++|++ +.-...+..+++.+.++ +.|++++..+
T Consensus 50 ~v~~~A~~~gIp--v~~~~~~~~~~~~~~l~~~~~Dliv~~~y 90 (314)
T 1fmt_A 50 PVKVLAEEKGLP--VFQPVSLRPQENQQLVAELQADVMVVVAY 90 (314)
T ss_dssp HHHHHHHHTTCC--EECCSCSCSHHHHHHHHHTTCSEEEEESC
T ss_pred HHHHHHHHcCCc--EEecCCCCCHHHHHHHHhcCCCEEEEeec
Confidence 466777777775 32222333455555554 3566665544
No 370
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=24.33 E-value=2.2e+02 Score=21.11 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCC---cEEEccCCChhHHHHHHh--cCcEEEEcCCCC-C----CChHHHHHH--HhCCcEEE
Q 012436 321 RLQSLKDKSIELKVDG---NVEFYKNLLYRDLVKLLG--GAVVGIHSMIDE-H----FGISVVEYM--AAGAIPIA 384 (464)
Q Consensus 321 ~~~~l~~~~~~~~l~~---~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e-~----~~~~~~Ea~--a~G~PvI~ 384 (464)
..+++.+.+++.|+.. .......-+.+.+.++-. .+|+.|+.+... + +--++.|.+ .+++||+.
T Consensus 71 ~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 71 IAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEE
Confidence 3445555666667654 344443346678888877 799999976422 1 222445544 34677764
No 371
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=24.32 E-value=2e+02 Score=20.64 Aligned_cols=108 Identities=6% Similarity=-0.051 Sum_probs=61.2
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc---CcEEEEcCC-CC-CCChHHHHHHH-
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG---AVVGIHSMI-DE-HFGISVVEYMA- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~---ad~~v~ps~-~e-~~~~~~~Ea~a- 377 (464)
..+++++.+.+ ...+.++...+..|. .+.. .-+.++..+.+.. .|++++-.. .+ .-|..+++.+.
T Consensus 5 ~~~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~ 75 (132)
T 2rdm_A 5 AVTILLADDEA-----ILLLDFESTLTDAGF--LVTA--VSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVARE 75 (132)
T ss_dssp SCEEEEECSSH-----HHHHHHHHHHHHTTC--EEEE--ESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHH
T ss_pred CceEEEEcCcH-----HHHHHHHHHHHHcCC--EEEE--ECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHh
Confidence 56788887643 445667777766553 3433 3344677676654 577766433 33 34555665554
Q ss_pred --hCCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 --AGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 --~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
..+|+|.............. . ...+++.. +.+++.++|.+++.
T Consensus 76 ~~~~~~ii~~s~~~~~~~~~~~-~-~~~~~l~kP~~~~~l~~~i~~~~~ 122 (132)
T 2rdm_A 76 IDPNMPIVYISGHAALEWASNG-V-PDSIILEKPFTSAQLITAVSQLLN 122 (132)
T ss_dssp HCTTCCEEEEESSCCTTHHHHS-C-TTCEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCccHHHHHhh-c-CCcceEeCCCCHHHHHHHHHHHHh
Confidence 36787764322221222111 0 11246654 99999999998876
No 372
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=24.10 E-value=3e+02 Score=22.64 Aligned_cols=106 Identities=8% Similarity=0.047 Sum_probs=60.8
Q ss_pred cEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcC-CCCCCChHHHHHHHh--C
Q 012436 305 PRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSM-IDEHFGISVVEYMAA--G 379 (464)
Q Consensus 305 ~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps-~~e~~~~~~~Ea~a~--G 379 (464)
.+++++.+.+ ...+.++...++.|. .|..... .++..+.+. ..|++++-. ..+.-|..+++.+.. +
T Consensus 6 ~~ILivdd~~-----~~~~~l~~~L~~~g~--~v~~~~~--~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~ 76 (238)
T 2gwr_A 6 QRILVVDDDA-----SLAEMLTIVLRGEGF--DTAVIGD--GTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSG 76 (238)
T ss_dssp CEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEECC--GGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCC
T ss_pred CeEEEEeCCH-----HHHHHHHHHHHHCCC--EEEEECC--HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCC
Confidence 4677776543 445666666666543 2443333 355555554 367776643 234445666666543 6
Q ss_pred CcEEEeC-CCCC--ccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 380 AIPIAHN-SAGP--KMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 380 ~PvI~~~-~~~~--~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
+|+|.-. .... ..+.... |..+++.. +++++.++|..++.
T Consensus 77 ~~ii~lt~~~~~~~~~~~~~~---Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 77 VPIVMLTAKTDTVDVVLGLES---GADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp CCEEEEEETTCCSCHHHHHHT---TCCEEEEESCCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCCHHHHHHHHHC---CCCEEEeCCCCHHHHHHHHHHHHh
Confidence 7877642 2221 1122333 56677764 99999999998865
No 373
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=23.89 E-value=25 Score=28.83 Aligned_cols=35 Identities=9% Similarity=0.056 Sum_probs=22.2
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhC
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEES 65 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g 65 (464)
|++..+|||+++..+. .|-.++++..+++.+.+.+
T Consensus 1 ~~~~~~~kiliiy~S~--~GnT~~lA~~ia~~l~~~~ 35 (193)
T 3d7n_A 1 MTTNSSSNTVVVYHSG--YGHTHRMAEAVAEGAEATL 35 (193)
T ss_dssp -----CCCEEEEECCS--SSHHHHHHHHHHHHHTCEE
T ss_pred CCCCCCCEEEEEEECC--ChHHHHHHHHHHHHhhhcc
Confidence 4455678999886553 4567778888888887655
No 374
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=23.82 E-value=3.5e+02 Score=24.11 Aligned_cols=33 Identities=15% Similarity=-0.157 Sum_probs=18.9
Q ss_pred HHhhhcCCcEEEecccccccchhh---hccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPLA---RIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~~---~~~~~p~v~ 166 (464)
+++...++|+|+...........+ ...|+++++
T Consensus 60 ~ll~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~ 95 (344)
T 3mz0_A 60 SLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFC 95 (344)
T ss_dssp HHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCCCCEEEECCCchhHHHHHHHHHHCCCcEEE
Confidence 346666899887555544433322 256766655
No 375
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=23.76 E-value=30 Score=25.81 Aligned_cols=40 Identities=8% Similarity=0.108 Sum_probs=27.2
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhC--CCCceEEEc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEES--PDLDCIVYT 74 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g--~~~~v~~~~ 74 (464)
.||++|+..+-.+. ....++...|....+.| ++|.++++.
T Consensus 7 ~~K~~ivi~s~d~~-~~~~~al~~A~~a~~~G~~~eV~i~~~G 48 (117)
T 2fb6_A 7 NDKLTILWTTDNKD-TVFNMLAMYALNSKNRGWWKHINIILWG 48 (117)
T ss_dssp TSEEEEEECCCCHH-HHHHTHHHHHHHHHHHTSCSEEEEEECS
T ss_pred CCeEEEEEEcCChH-HHHHHHHHHHHHHHHcCCCCcEEEEEEC
Confidence 38999887664332 23345788899999999 566665544
No 376
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=23.75 E-value=2.6e+02 Score=24.16 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=21.6
Q ss_pred hHHHHHHhhhcCCcEEEecccccc--cch-hhhccCceEEE
Q 012436 129 VYLSWEALCKFTPLYYFDTSGYAF--TYP-LARIFGCRVIC 166 (464)
Q Consensus 129 ~~~~~~~l~~~~~Dvv~~~~~~~~--~~~-~~~~~~~p~v~ 166 (464)
.....+.+.+.++|.|+..++... .+. +....++|++-
T Consensus 63 ~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 63 TWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 334445566778997764333222 223 44467888765
No 377
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=23.64 E-value=1.5e+02 Score=28.37 Aligned_cols=35 Identities=3% Similarity=-0.138 Sum_probs=24.2
Q ss_pred hHHHHHHhhhcCCcEEEecccccccchhhhccCceEEE
Q 012436 129 VYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVIC 166 (464)
Q Consensus 129 ~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~ 166 (464)
.+...+.+++.+||+++.++. ...+++..++|.+-
T Consensus 390 ~~el~~~i~~~~pDL~ig~~~---~~~~a~k~gIP~~~ 424 (483)
T 3pdi_A 390 ARVLLKTVDEYQADILIAGGR---NMYTALKGRVPFLD 424 (483)
T ss_dssp HHHHHHHHHHTTCSEEECCGG---GHHHHHHTTCCBCC
T ss_pred HHHHHHHHHhcCCCEEEECCc---hhHHHHHcCCCEEE
Confidence 344556688889999995443 22367788999863
No 378
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=23.53 E-value=1.1e+02 Score=27.47 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGA 380 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~ 380 (464)
|+++++-+.+.. .+..++.+++++.. .+ .+++.++++ .+|+++..+....-.-.+.+++..|+
T Consensus 25 ~~~~l~av~d~~-------~~~~~~~~~~~~~~-~~-------~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk 89 (344)
T 3ezy_A 25 DDAILYAISDVR-------EDRLREMKEKLGVE-KA-------YKDPHELIEDPNVDAVLVCSSTNTHSELVIACAKAKK 89 (344)
T ss_dssp TTEEEEEEECSC-------HHHHHHHHHHHTCS-EE-------ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEECCC-------HHHHHHHHHHhCCC-ce-------eCCHHHHhcCCCCCEEEEcCCCcchHHHHHHHHhcCC
Confidence 577777555432 14556666666542 11 145666777 78988876544333334678999999
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
+|++-.
T Consensus 90 ~v~~EK 95 (344)
T 3ezy_A 90 HVFCEK 95 (344)
T ss_dssp EEEEES
T ss_pred eEEEEC
Confidence 999865
No 379
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=23.37 E-value=2.1e+02 Score=20.57 Aligned_cols=108 Identities=9% Similarity=0.009 Sum_probs=59.3
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHHh--
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMAA-- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a~-- 378 (464)
..+++++.+.+ ...+.++...+ .+ -.+.... +.++..+.+.. .|++++-. ..+.-|..+++.+..
T Consensus 4 ~~~ilivdd~~-----~~~~~l~~~l~-~~--~~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 73 (133)
T 3nhm_A 4 KPKVLIVENSW-----TMRETLRLLLS-GE--FDCTTAA--DGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEP 73 (133)
T ss_dssp -CEEEEECSCH-----HHHHHHHHHHT-TT--SEEEEES--SHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCEEEEEcCCH-----HHHHHHHHHHh-CC--cEEEEEC--CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 45777777542 33455555544 22 2343333 34666666654 57776643 344556667666654
Q ss_pred ---CCcEEEeCCCCCccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 ---GAIPIAHNSAGPKMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 ---G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
++|+|....... .+.......|..+++.. +++++.++|..++.
T Consensus 74 ~~~~~pii~~s~~~~-~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 74 TLKHIPVIFVSGYAP-RTEGPADQPVPDAYLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp TTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCc-HhHHHHhhcCCceEEeccCCHHHHHHHHHHHHh
Confidence 678876432222 12222211155667764 99999999999886
No 380
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=23.32 E-value=1.1e+02 Score=25.14 Aligned_cols=32 Identities=16% Similarity=0.388 Sum_probs=24.3
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
|||+++ |+.++-..+++.|.+.| ++|+++..+
T Consensus 1 M~iiIi--------G~G~~G~~la~~L~~~g--~~v~vid~~ 32 (218)
T 3l4b_C 1 MKVIII--------GGETTAYYLARSMLSRK--YGVVIINKD 32 (218)
T ss_dssp CCEEEE--------CCHHHHHHHHHHHHHTT--CCEEEEESC
T ss_pred CEEEEE--------CCCHHHHHHHHHHHhCC--CeEEEEECC
Confidence 567775 45778888999999999 677777654
No 381
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=23.29 E-value=3.8e+02 Score=23.44 Aligned_cols=107 Identities=11% Similarity=0.085 Sum_probs=51.8
Q ss_pred ccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeecccc
Q 012436 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKW 110 (464)
Q Consensus 31 ~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (464)
..+++||+++.+. ...-+..|..+..+-..+.++..+.++. +.. ......+|+ +++.++...
T Consensus 87 ~~~~~ri~vl~Sg------~g~~l~~ll~~~~~g~l~~~i~~Visn~----~~~-~~~A~~~gI------p~~~~~~~~- 148 (286)
T 3n0v_A 87 PNHRPKVVIMVSK------ADHCLNDLLYRQRIGQLGMDVVAVVSNH----PDL-EPLAHWHKI------PYYHFALDP- 148 (286)
T ss_dssp TTCCCEEEEEESS------CCHHHHHHHHHHHTTSSCCEEEEEEESS----STT-HHHHHHTTC------CEEECCCBT-
T ss_pred CCCCcEEEEEEeC------CCCCHHHHHHHHHCCCCCcEEEEEEeCc----HHH-HHHHHHcCC------CEEEeCCCc-
Confidence 3457899987543 2255666676665533345655554433 111 123445565 333322210
Q ss_pred cccccCcceehhhhchhhhHHHHHHhhhcCCcEEEecccccccch--hhhccCceEEEEee
Q 012436 111 IEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTH 169 (464)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~--~~~~~~~p~v~~~h 169 (464)
. .+ ...-....+.+++.+||+++. .++.-.++ +.....-+ ++-+|
T Consensus 149 -~----~r-------~~~~~~~~~~l~~~~~Dlivl-a~y~~il~~~~l~~~~~~-~iNiH 195 (286)
T 3n0v_A 149 -K----DK-------PGQERKVLQVIEETGAELVIL-ARYMQVLSPELCRRLDGW-AINIH 195 (286)
T ss_dssp -T----BH-------HHHHHHHHHHHHHHTCSEEEE-SSCCSCCCHHHHHHTTTS-EEEEE
T ss_pred -C----CH-------HHHHHHHHHHHHhcCCCEEEe-cccccccCHHHHhhhcCC-eEEec
Confidence 0 00 001123456688899998883 33343443 33333333 34456
No 382
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=23.22 E-value=3e+02 Score=24.35 Aligned_cols=92 Identities=12% Similarity=-0.022 Sum_probs=51.6
Q ss_pred hHHHHHHhcCcEEEEcC-CCCCCChHHHHHHHhCCc-EEEeCCCCCcc-ceecc-c-CCccceeecC-CHHHHHHHHHHH
Q 012436 347 RDLVKLLGGAVVGIHSM-IDEHFGISVVEYMAAGAI-PIAHNSAGPKM-DIVLE-E-DGQQTGFLAQ-NAEEYADAIVKI 420 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps-~~e~~~~~~~Ea~a~G~P-vI~~~~~~~~~-~~v~~-~-~~~~~g~~~~-~~~~la~~i~~l 420 (464)
..-..-++.||++|... ..|+|--.++++.. +.+ +|.... +... ....+ . ..+..-|+-+ +...+++.|.+.
T Consensus 79 p~d~~~l~~ADlvv~~G~~lE~w~~~~~~~~~-~~~~~v~~s~-~i~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~~~ 156 (313)
T 1toa_A 79 AGDVEWLGNADLILYNGLHLETKMGEVFSKLR-GSRLVVAVSE-TIPVSQRLSLEEAEFDPHVWFDVKLWSYSVKAVYES 156 (313)
T ss_dssp HHHHHHHHHCSEEEECCTTCSTTCHHHHHHHT-TSSEEEEGGG-GSCGGGSCBSTTSCBCCCGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEcCCCcHHHHHHHHHhcc-CCCeEEEeec-CcccccccccCCCCCCCceeCCHHHHHHHHHHHHHH
Confidence 44446789999998765 47888888888776 344 443321 2200 11000 0 0012223333 555666666554
Q ss_pred Hc-CCHHHHHHHHHHHHHHHH
Q 012436 421 IS-MPETERLEMAAAARRRAA 440 (464)
Q Consensus 421 ~~-~~~~~~~~~~~~~~~~~~ 440 (464)
+. .||+......+|+.++.+
T Consensus 157 L~~~DP~~a~~Y~~N~~~~~~ 177 (313)
T 1toa_A 157 LCKLLPGKTREFTQRYQAYQQ 177 (313)
T ss_dssp HHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHChhhHHHHHHHHHHHHH
Confidence 43 388888888888777653
No 383
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=23.19 E-value=2.6e+02 Score=24.19 Aligned_cols=120 Identities=6% Similarity=-0.043 Sum_probs=69.1
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEc-cCCChhHHHHHHhcCc-E
Q 012436 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY-KNLLYRDLVKLLGGAV-V 358 (464)
Q Consensus 281 ~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~-g~~~~~~~~~~l~~ad-~ 358 (464)
..|++.+++.+... .+.-+++.+.+.++ .+++.+.+++.|+. .+.+. +..+.+.+..+.+.++ +
T Consensus 109 ~~g~e~f~~~~~~a---------Gvdgvii~Dlp~ee----~~~~~~~~~~~gl~-~i~liaP~t~~eri~~i~~~~~gf 174 (267)
T 3vnd_A 109 ANGIDEFYTKAQAA---------GVDSVLIADVPVEE----SAPFSKAAKAHGIA-PIFIAPPNADADTLKMVSEQGEGY 174 (267)
T ss_dssp HHCHHHHHHHHHHH---------TCCEEEETTSCGGG----CHHHHHHHHHTTCE-EECEECTTCCHHHHHHHHHHCCSC
T ss_pred HhhHHHHHHHHHHc---------CCCEEEeCCCCHhh----HHHHHHHHHHcCCe-EEEEECCCCCHHHHHHHHHhCCCc
Confidence 34778888887776 77788888876543 36778888888875 34444 4456788888988887 3
Q ss_pred EEEcCCCCCCCh------HHHHHHH-----hCCcEEEeCCCCCccc---eecccCCccceeecCCHHHHHHHHHH
Q 012436 359 GIHSMIDEHFGI------SVVEYMA-----AGAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQNAEEYADAIVK 419 (464)
Q Consensus 359 ~v~ps~~e~~~~------~~~Ea~a-----~G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~~~~~la~~i~~ 419 (464)
....|.....|. .+.|.+. ..+|+++----...++ .+.. +-.|+++.+ .+.+.|.+
T Consensus 175 vY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~---gADgvVVGS--aiv~~i~~ 244 (267)
T 3vnd_A 175 TYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKA---GAAGAISGS--AVVKIIEA 244 (267)
T ss_dssp EEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHT---TCSEEEECH--HHHHHHHH
T ss_pred EEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHc---CCCEEEECH--HHHHHHHH
Confidence 333344332222 1333332 3678877321111122 2233 567777764 44444443
No 384
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=23.16 E-value=2e+02 Score=20.29 Aligned_cols=105 Identities=9% Similarity=0.079 Sum_probs=57.9
Q ss_pred EEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcC-CCCCCChHHHHHHHh----
Q 012436 306 RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSM-IDEHFGISVVEYMAA---- 378 (464)
Q Consensus 306 ~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps-~~e~~~~~~~Ea~a~---- 378 (464)
++.++.+.+ ...+.++...+..|. .+... -+..+..+.+. ..|++++-. ..+.-|..+++.+..
T Consensus 3 ~ilivdd~~-----~~~~~l~~~L~~~~~--~v~~~--~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 73 (124)
T 1mb3_A 3 KVLIVEDNE-----LNMKLFHDLLEAQGY--ETLQT--REGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDL 73 (124)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHHTTC--EEEEE--SCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTT
T ss_pred EEEEEcCCH-----HHHHHHHHHHHHcCc--EEEEe--CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccc
Confidence 455665432 445666666666543 23322 23355555554 367776543 234446667766653
Q ss_pred -CCcEEEeCCCCCc---cceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 -GAIPIAHNSAGPK---MDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 -G~PvI~~~~~~~~---~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|........ .+.... |..+++.. +.+++.+++..++.
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 74 AHIPVVAVTAFAMKGDEERIREG---GCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp TTSCEEEEC------CHHHHHHH---TCSEEECSSCCHHHHHHHHHHHHS
T ss_pred cCCcEEEEECCCCHHHHHHHHhC---CCCEEEeCCCCHHHHHHHHHHHHh
Confidence 5788764322221 122233 55677764 99999999988875
No 385
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=23.05 E-value=1.1e+02 Score=22.53 Aligned_cols=65 Identities=9% Similarity=-0.004 Sum_probs=41.8
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEE
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPI 383 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI 383 (464)
+..++|.|.-... +++++++++.+|. .+.+.++ ...|++|.....+..+-.+-.|...|+|||
T Consensus 13 G~~~ViTG~l~~~-----R~e~k~~ie~~Gg----kv~~sVs--------kkT~~lV~g~~~e~~gsKl~kA~~lgI~Iv 75 (113)
T 2cok_A 13 NMKILTLGKLSRN-----KDEVKAMIEKLGG----KLTGTAN--------KASLCISTKKEVEKMNKKMEEVKEANIRVV 75 (113)
T ss_dssp SCEEEECSCCSSC-----HHHHHHHHHHTTC----EEESCST--------TCSEEECCHHHHHHCCHHHHHHHHTTCCEE
T ss_pred CCEEEEEecCCCC-----HHHHHHHHHHCCC----EEcCccc--------cCccEEEECCCCCCCChHHHHHHHCCCcEE
Confidence 6678888875321 3677777777763 3456663 345655544112335778899999999988
Q ss_pred Ee
Q 012436 384 AH 385 (464)
Q Consensus 384 ~~ 385 (464)
.-
T Consensus 76 sE 77 (113)
T 2cok_A 76 SE 77 (113)
T ss_dssp CT
T ss_pred eH
Confidence 63
No 386
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=22.91 E-value=2.3e+02 Score=25.15 Aligned_cols=33 Identities=9% Similarity=-0.229 Sum_probs=18.8
Q ss_pred HHhhhcCCcEEEecccccccchhh---hccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPLA---RIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~~---~~~~~p~v~ 166 (464)
+++.+.++|+|+..+........+ -..|+++++
T Consensus 60 ~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~ 95 (336)
T 2p2s_A 60 QLITDASIDLIACAVIPCDRAELALRTLDAGKDFFT 95 (336)
T ss_dssp HHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHhhCCCCCEEEEeCChhhHHHHHHHHHHCCCcEEE
Confidence 346666899887555544333322 256776655
No 387
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=22.90 E-value=3.4e+02 Score=22.73 Aligned_cols=63 Identities=8% Similarity=-0.085 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG 355 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ 355 (464)
..+...+++..+.+.. |+...+++.+. .....+.+.+++.|+++.+.+.|+=..+...+.+..
T Consensus 170 ~~~~~~~~~~~~l~~~----~~~~ai~~~~d------~~a~g~~~al~~~g~p~di~vig~d~~~~~~~~~~~ 232 (276)
T 3ksm_A 170 DRGAARSEMLRLLKET----PTIDGLFTPNE------STTIGALVAIRQSGMSKQFGFIGFDQTEELEAAMYA 232 (276)
T ss_dssp SHHHHHHHHHHHHHHC----SCCCEEECCSH------HHHHHHHHHHHHTTCTTSSEEEEESCCHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhC----CCceEEEECCc------hhhhHHHHHHHHcCCCCCeEEEEeCCCHHHHHHHHc
Confidence 4566666777776665 46677766543 222345566778888888999987544444455554
No 388
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=22.84 E-value=2.8e+02 Score=21.82 Aligned_cols=44 Identities=2% Similarity=-0.040 Sum_probs=25.5
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
.+++|++++...-..+--...-...++..|.+.|+++......+
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~ 54 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVK 54 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeC
Confidence 46789998875544421123344667888888995443333333
No 389
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=22.80 E-value=2.2e+02 Score=20.58 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=60.4
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHH---
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMA--- 377 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a--- 377 (464)
..+++++.+.+ ...+.++...+..|. .+.... +.++..+.+.. .|++++-.. .+.-|..+++.+.
T Consensus 3 ~~~Ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~ 73 (132)
T 3crn_A 3 LKRILIVDDDT-----AILDSTKQILEFEGY--EVEIAA--TAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLR 73 (132)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHC
T ss_pred ccEEEEEeCCH-----HHHHHHHHHHHHCCc--eEEEeC--CHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhC
Confidence 34667776543 445666666666543 343322 33566565543 577776432 3334556666553
Q ss_pred hCCcEEEe-CCCCC--ccceecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 378 AGAIPIAH-NSAGP--KMDIVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 378 ~G~PvI~~-~~~~~--~~~~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.++|+|.. ..... ..+.... |..+++.. +.+++.++|..++.
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~~~---ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 74 PGMKKIMVTGYASLENSVFSLNA---GADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp TTSEEEEEESCCCHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeccccHHHHHHHHhc---cchhhccCCCCHHHHHHHHHHHHh
Confidence 36777764 32221 0112233 56777764 99999999988875
No 390
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=22.79 E-value=1.9e+02 Score=25.12 Aligned_cols=37 Identities=11% Similarity=-0.082 Sum_probs=21.7
Q ss_pred HHHHHHhhhcCCcEEEecccccc--cch-hhhccCceEEE
Q 012436 130 YLSWEALCKFTPLYYFDTSGYAF--TYP-LARIFGCRVIC 166 (464)
Q Consensus 130 ~~~~~~l~~~~~Dvv~~~~~~~~--~~~-~~~~~~~p~v~ 166 (464)
....+.+.+.++|.|+..++... .+. +....++|++-
T Consensus 76 ~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 76 LEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp HHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 34445677889997764333222 223 44467889864
No 391
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=22.76 E-value=1.2e+02 Score=27.71 Aligned_cols=33 Identities=15% Similarity=-0.044 Sum_probs=20.2
Q ss_pred HHhhhcCCcEEEecccccccchh---hhccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPL---ARIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~---~~~~~~p~v~ 166 (464)
+++.+.++|+|+..+.......+ +-..|+++++
T Consensus 69 ~ll~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~ 104 (390)
T 4h3v_A 69 TLLERDDVQLVDVCTPGDSHAEIAIAALEAGKHVLC 104 (390)
T ss_dssp HHTTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCCcee
Confidence 44777789988755554444332 2257777655
No 392
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=22.65 E-value=4.4e+02 Score=24.05 Aligned_cols=99 Identities=8% Similarity=-0.018 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHh-cCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 284 HPLQLEAFSVALRKL-DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 284 ~~~ll~a~~~l~~~~-~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
+..+++.+.+..... . ..-.++++|+.. ...+...+.+.+.+.+.+..-.+.-+...+..++.+.+..+|.+++.
T Consensus 239 ~~~~l~~~~~~~~~~~~---~~kv~iiy~S~~-GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiig 314 (414)
T 2q9u_A 239 MGLAIAEYDRWSKGQHC---QKKVTVVLDSMY-GTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFA 314 (414)
T ss_dssp HHHHHHHHHHHHTTCCC---CSEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHhcCccc---CCeEEEEEECCC-chHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEE
Confidence 455565555544321 0 012355566543 33344455555555544432122223444455666788899987664
Q ss_pred C--CCCCCChH---HHHHHH-----hCCcEEEeC
Q 012436 363 M--IDEHFGIS---VVEYMA-----AGAIPIAHN 386 (464)
Q Consensus 363 s--~~e~~~~~---~~Ea~a-----~G~PvI~~~ 386 (464)
+ +..+.+-. .++.+. .|+|+....
T Consensus 315 sP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 315 SPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp CCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEE
T ss_pred cCccCcCchHHHHHHHHHHHhhcccCCCEEEEEE
Confidence 3 45555544 355543 488877543
No 393
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=22.64 E-value=1.9e+02 Score=24.76 Aligned_cols=42 Identities=7% Similarity=0.092 Sum_probs=22.9
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEE
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~ 73 (464)
.++.+..+|+++.+..... -....+..+.+++.+.| +++.+.
T Consensus 3 L~~~~~~~Ig~i~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~ 44 (290)
T 3clk_A 3 LVKKSSNVIAAVVSSVRTN-FAQQILDGIQEEAHKNG--YNLIIV 44 (290)
T ss_dssp -----CCEEEEECCCCSSS-HHHHHHHHHHHHHHTTT--CEEEEE
T ss_pred cccccCCEEEEEeCCCCCh-HHHHHHHHHHHHHHHcC--CeEEEE
Confidence 3456677899998765432 23344555556667777 565554
No 394
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=22.63 E-value=2.1e+02 Score=20.20 Aligned_cols=106 Identities=8% Similarity=0.039 Sum_probs=58.5
Q ss_pred cEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHH--hC
Q 012436 305 PRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMA--AG 379 (464)
Q Consensus 305 ~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a--~G 379 (464)
.++.++.+.+ ...+.++...+..|. .+.... +.++..+.+.. .|++++-.. .+.-|..+++.+. ..
T Consensus 3 ~~ilivdd~~-----~~~~~l~~~L~~~~~--~v~~~~--~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~ 73 (122)
T 1zgz_A 3 HHIVIVEDEP-----VTQARLQSYFTQEGY--TVSVTA--SGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERST 73 (122)
T ss_dssp CEEEEECSSH-----HHHHHHHHHHHHTTC--EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCC
T ss_pred cEEEEEECCH-----HHHHHHHHHHHHCCC--eEEEec--CHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCC
Confidence 3566666532 445666666665543 343332 34666666554 577766432 3344566666664 35
Q ss_pred CcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 380 AIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 380 ~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.|+|.......... .... |..+++.. +.+++.+.+..++.
T Consensus 74 ~~ii~~s~~~~~~~~~~~~~~---ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 74 VGIILVTGRSDRIDRIVGLEM---GADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp CEEEEEESSCCHHHHHHHHHH---TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChhhHHHHHHh---CHHHHccCCCCHHHHHHHHHHHHH
Confidence 67765432222111 2223 55677664 99999999887764
No 395
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=22.57 E-value=2.6e+02 Score=23.86 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=23.1
Q ss_pred ccccccceEEEecCC--CCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 29 ARRNRTTSVAFFHPN--TNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~--~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
.++.+..+|+++.+. .... -....+..+.+++.+.| .++.++.
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~-~~~~~~~gi~~~~~~~g--~~~~~~~ 58 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGI-YFSELLFHAARMAEEKG--RQLLLAD 58 (296)
T ss_dssp -----CCEEEEEECGGGCC---CHHHHHHHHHHHHHHTT--CEEEEEC
T ss_pred hhcCCCceEEEEeCCcccCCc-hHHHHHHHHHHHHHHCC--CEEEEEe
Confidence 345566789999876 4322 23445555666677777 5655554
No 396
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=22.55 E-value=1.3e+02 Score=26.92 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=43.1
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCCc
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAI 381 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~P 381 (464)
+++++-+.+.. .+..++.+++++.+. + ..++.++++ ..|+++..+....-.-.+.+|+..|++
T Consensus 28 ~~~l~av~d~~-------~~~a~~~a~~~~~~~-~-------~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~~Gkh 92 (334)
T 3ohs_X 28 EHQVVAVAARD-------LSRAKEFAQKHDIPK-A-------YGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKA 92 (334)
T ss_dssp TEEEEEEECSS-------HHHHHHHHHHHTCSC-E-------ESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHTTCE
T ss_pred CeEEEEEEcCC-------HHHHHHHHHHcCCCc-c-------cCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHhcCCE
Confidence 35666665543 145666777777541 1 245666776 588887765433333346889999999
Q ss_pred EEEeC
Q 012436 382 PIAHN 386 (464)
Q Consensus 382 vI~~~ 386 (464)
|++-.
T Consensus 93 Vl~EK 97 (334)
T 3ohs_X 93 VLCEK 97 (334)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99865
No 397
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.52 E-value=66 Score=20.12 Aligned_cols=19 Identities=42% Similarity=0.765 Sum_probs=11.0
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 012436 4 YGILIWAVITAVLASILIL 22 (464)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (464)
.++-.|++++.++.-++.|
T Consensus 8 ~~vp~wiIi~svl~GLllL 26 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLL 26 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHH
Confidence 3445566666666555554
No 398
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=22.41 E-value=3.8e+02 Score=24.99 Aligned_cols=83 Identities=11% Similarity=-0.011 Sum_probs=49.6
Q ss_pred CcEEEEEeccCC--CCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCCh
Q 012436 269 YPAIISVAQFRP--EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (464)
Q Consensus 269 ~~~i~~~G~~~~--~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 346 (464)
+..|.++|.... -++ ..+...+..+.... ++++.++|...-.-.++..+..++.+++.|. .+.+.
T Consensus 188 Glkva~vgd~~~s~Gd~-nnVa~Sli~~l~~l-----G~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~--~v~~~----- 254 (418)
T 2yfk_A 188 GKKVAMTWAYSPSYGKP-LSVPQGIVGLMTRL-----GMDVVLAHPEGYEIMPEVEEVAKKNAAEFGG--NFTKT----- 254 (418)
T ss_dssp TCEEEEECCCCSSSCCC-SHHHHHHHHHHGGG-----TCEEEEECCTTCCCCHHHHHHHHHHHHHHSS--EEEEE-----
T ss_pred CCEEEEEeccccccCcc-chHHHHHHHHHHHc-----CCEEEEECCccccCCHHHHHHHHHHHHHcCC--EEEEE-----
Confidence 478898885332 233 23444444444443 7899999974332234455555666666652 34443
Q ss_pred hHHHHHHhcCcEEEEcCC
Q 012436 347 RDLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 347 ~~~~~~l~~ad~~v~ps~ 364 (464)
.++.+.+..||++....|
T Consensus 255 ~d~~eav~~ADVVytd~W 272 (418)
T 2yfk_A 255 NSMAEAFKDADVVYPKSW 272 (418)
T ss_dssp SCHHHHHTTCSEEEECCC
T ss_pred cCHHHHhcCCCEEEEccc
Confidence 456778999999887654
No 399
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=22.35 E-value=2.4e+02 Score=24.15 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=23.2
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
.++.+..+|+++.+..... =....+..+.+++.+.| +++.++..
T Consensus 3 L~~~~~~~Ig~i~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~ 46 (290)
T 2rgy_A 3 LATQQLGIIGLFVPTFFGS-YYGTILKQTDLELRAVH--RHVVVATG 46 (290)
T ss_dssp -----CCEEEEECSCSCSH-HHHHHHHHHHHHHHHTT--CEEEEECC
T ss_pred cccCCCCeEEEEeCCCCCc-hHHHHHHHHHHHHHHCC--CEEEEEeC
Confidence 4456677899998765322 12334455556677777 55555443
No 400
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=22.29 E-value=2.5e+02 Score=22.26 Aligned_cols=48 Identities=4% Similarity=-0.099 Sum_probs=24.6
Q ss_pred cccccccceEEEecCCCCC-----CCC--cchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 28 NARRNRTTSVAFFHPNTND-----GGG--GERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 28 ~~~~~~~mkI~~~~~~~~~-----~GG--~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
+....+++|+++++-+-.. ..| ...--..|++.|.+.|+++.-....+
T Consensus 9 ~~~~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~ 63 (178)
T 3iwt_A 9 KENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP 63 (178)
T ss_dssp ----CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred HhcCCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeC
Confidence 4445577999988643210 011 13333567888999995443333333
No 401
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=22.24 E-value=2.2e+02 Score=24.32 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=23.5
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
.++.+..+|+++.+..... -....+..+.+++.+.| +++.++.
T Consensus 3 L~~~~~~~Igvi~~~~~~~-~~~~~~~gi~~~~~~~g--~~~~~~~ 45 (285)
T 3c3k_A 3 LRTAKTGMLLVMVSNIANP-FCAAVVKGIEKTAEKNG--YRILLCN 45 (285)
T ss_dssp ----CCCEEEEEESCTTSH-HHHHHHHHHHHHHHHTT--CEEEEEE
T ss_pred CcCCCCCEEEEEeCCCCCc-hHHHHHHHHHHHHHHcC--CEEEEEe
Confidence 3456677899998865322 22334455556666777 5555544
No 402
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=22.11 E-value=1.5e+02 Score=26.80 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=19.1
Q ss_pred HHhhhcCCcEEEecccccccchhh---hccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPLA---RIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~~---~~~~~p~v~ 166 (464)
+++.+.++|+|+..........++ -..|+++++
T Consensus 62 ~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~ 97 (359)
T 3m2t_A 62 AMLNQVPLDAVVMAGPPQLHFEMGLLAMSKGVNVFV 97 (359)
T ss_dssp HHHHHSCCSEEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEE
Confidence 446667899887555544333322 256777655
No 403
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=22.03 E-value=2.5e+02 Score=25.61 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=47.7
Q ss_pred CCcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCc--cHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 012436 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKS--DEERLQSLKDKSIELKVDGNVEFYKNLL 345 (464)
Q Consensus 268 ~~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~--~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 345 (464)
++..|.|+|-... | +...+..+.... ++++.++|...-.. +++..+..++.+++.|. .+.+.
T Consensus 179 ~glkva~vGD~~n--n---va~Sl~~~~~~l-----G~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~--~i~~~---- 242 (365)
T 4amu_A 179 KNKKIVFIGDYKN--N---VGVSTMIGAAFN-----GMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGG--SLRFS---- 242 (365)
T ss_dssp TTCEEEEESSTTS--H---HHHHHHHHHHHT-----TCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSC--EEEEE----
T ss_pred CCCEEEEECCCCc--c---hHHHHHHHHHHc-----CCEEEEECCccccCCCcHHHHHHHHHHHHHcCC--EEEEE----
Confidence 4588999997531 2 333333333333 78999999643322 33455566666666552 34442
Q ss_pred hhHHHHHHhcCcEEEEcC
Q 012436 346 YRDLVKLLGGAVVGIHSM 363 (464)
Q Consensus 346 ~~~~~~~l~~ad~~v~ps 363 (464)
+++.+.++.||++....
T Consensus 243 -~d~~eav~~aDVVytd~ 259 (365)
T 4amu_A 243 -TDKILAAQDADVIYTDV 259 (365)
T ss_dssp -SCHHHHTTTCSEEEECC
T ss_pred -CCHHHHhcCCCEEEecc
Confidence 45667899999987643
No 404
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=21.99 E-value=86 Score=25.88 Aligned_cols=34 Identities=6% Similarity=0.093 Sum_probs=24.9
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
+|||+++ ||....=..+++.|.+.| ++|+.+...
T Consensus 4 m~~ilIt-------GatG~iG~~l~~~L~~~g--~~V~~~~r~ 37 (227)
T 3dhn_A 4 VKKIVLI-------GASGFVGSALLNEALNRG--FEVTAVVRH 37 (227)
T ss_dssp CCEEEEE-------TCCHHHHHHHHHHHHTTT--CEEEEECSC
T ss_pred CCEEEEE-------cCCchHHHHHHHHHHHCC--CEEEEEEcC
Confidence 4788775 455666677799999999 677777654
No 405
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=21.95 E-value=2.8e+02 Score=21.43 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc----Cc-EEEEcCCCCCCChHHHHHHHh-CCcEEEeCCCCC--c
Q 012436 320 ERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG----AV-VGIHSMIDEHFGISVVEYMAA-GAIPIAHNSAGP--K 391 (464)
Q Consensus 320 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad-~~v~ps~~e~~~~~~~Ea~a~-G~PvI~~~~~~~--~ 391 (464)
+..+.+++.+.++|+ .+.+.-.-...++.+.+.+ +| +.+.|--+...+..+.+|++. ++|+|=-..... .
T Consensus 31 di~~~l~~~a~~~g~--~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aR 108 (146)
T 1h05_A 31 ELVALIEREAAELGL--KAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAR 108 (146)
T ss_dssp HHHHHHHHHHHHTTC--EEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHHTCCSCEEEEESSCGGGS
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhCCCCEEEEEecCcccc
Confidence 444566666666665 3566555455566665554 44 677887788889999999865 889985432211 1
Q ss_pred cc-----eecccCCccceeecC-CHHHHHHHHHHHH
Q 012436 392 MD-----IVLEEDGQQTGFLAQ-NAEEYADAIVKII 421 (464)
Q Consensus 392 ~~-----~v~~~~~~~~g~~~~-~~~~la~~i~~l~ 421 (464)
++ ++.+ ...|.++. -.+...-+++.++
T Consensus 109 E~FRh~S~~s~---~a~GvI~G~G~~gY~lAl~~~~ 141 (146)
T 1h05_A 109 EEFRRHSYLSP---IATGVIVGLGIQGYLLALRYLA 141 (146)
T ss_dssp CGGGGCCSSGG---GSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccccccc---ceeEEEEecCHHHHHHHHHHHH
Confidence 22 3333 45677776 6777777776654
No 406
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=21.93 E-value=88 Score=26.11 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=23.7
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
+.+-+.|+|++. ||....=..+++.|.+.| ++|++++..
T Consensus 16 ~~~l~~~~ilVt-------GatG~iG~~l~~~L~~~G--~~V~~~~R~ 54 (236)
T 3e8x_A 16 NLYFQGMRVLVV-------GANGKVARYLLSELKNKG--HEPVAMVRN 54 (236)
T ss_dssp -----CCEEEEE-------TTTSHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred ccCcCCCeEEEE-------CCCChHHHHHHHHHHhCC--CeEEEEECC
Confidence 334456788875 344444456689999999 677777654
No 407
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=21.80 E-value=1.8e+02 Score=20.87 Aligned_cols=67 Identities=10% Similarity=0.172 Sum_probs=41.4
Q ss_pred cEEEEEeccC--CCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChh
Q 012436 270 PAIISVAQFR--PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (464)
Q Consensus 270 ~~i~~~G~~~--~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 347 (464)
..++-.+.+. ..-|+..++.+.+.+.+. +.++.++|-. +.+++..+..|+...+.+...+ +
T Consensus 44 ~vvlDls~v~~iDssgl~~L~~~~~~~~~~------g~~l~l~~~~---------~~v~~~l~~~gl~~~~~i~~~~--~ 106 (117)
T 4hyl_A 44 KMILDLREVSYMSSAGLRVLLSLYRHTSNQ------QGALVLVGVS---------EEIRDTMEITGFWNFFTACASM--D 106 (117)
T ss_dssp EEEEEEEEEEEECHHHHHHHHHHHHHHHHT------TCEEEEECCC---------HHHHHHHHHHTCGGGCEEESCH--H
T ss_pred eEEEECCCCcEEcHHHHHHHHHHHHHHHHc------CCEEEEEeCC---------HHHHHHHHHhCccceeeecCCH--H
Confidence 3445444443 234778888888877664 6788888865 4566667777776656555444 4
Q ss_pred HHHHHH
Q 012436 348 DLVKLL 353 (464)
Q Consensus 348 ~~~~~l 353 (464)
+..+.+
T Consensus 107 ~Al~~~ 112 (117)
T 4hyl_A 107 EALRIL 112 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 408
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=21.79 E-value=1.3e+02 Score=26.53 Aligned_cols=47 Identities=13% Similarity=-0.028 Sum_probs=27.8
Q ss_pred ccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccC
Q 012436 27 HNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (464)
Q Consensus 27 ~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~ 77 (464)
....+.+++|+..+. . ..|-|-...+.+||.+|++.| ..|.++..+.
T Consensus 33 ~~~~~~~~~~vI~v~-~-KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~ 79 (307)
T 3end_A 33 DEADKITGAKVFAVY-G-KGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 79 (307)
T ss_dssp -------CCEEEEEE-C-STTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred ccccccCCceEEEEE-C-CCCccHHHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 334445556666555 3 222355667789999999999 6777777654
No 409
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=21.68 E-value=48 Score=27.85 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=23.3
Q ss_pred ccceEEEecCCCCCC---CCcc-hhhHHHHHHhhhhCCCCceEEE
Q 012436 33 RTTSVAFFHPNTNDG---GGGE-RVLWCAVKAIQEESPDLDCIVY 73 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~---GG~~-~~~~~l~~~L~~~g~~~~v~~~ 73 (464)
.+|||+++....... ++.. ..+..+++.+.+.|++++++-+
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL 68 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTV 68 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 346899886655422 2333 3334556667778866654443
No 410
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=21.64 E-value=1e+02 Score=27.59 Aligned_cols=39 Identities=10% Similarity=-0.035 Sum_probs=25.7
Q ss_pred HHHHHHhc---CcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 348 DLVKLLGG---AVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 348 ~~~~~l~~---ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
++.++++. .|+++.++....-.-.+.+|+..|++|++-.
T Consensus 71 ~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EK 112 (330)
T 4ew6_A 71 TIEAMLDAEPSIDAVSLCMPPQYRYEAAYKALVAGKHVFLEK 112 (330)
T ss_dssp SHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCEEEECS
T ss_pred CHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEeC
Confidence 44555554 8887776543322334688999999999854
No 411
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=21.51 E-value=42 Score=27.54 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=20.5
Q ss_pred ceEEEecCCCCCCCC-cchhhHHHHHHhhhhCCCCceEEEc
Q 012436 35 TSVAFFHPNTNDGGG-GERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 35 mkI~~~~~~~~~~GG-~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
|||+++..+...+ + ....+..+++.+ +.| ++|.+..
T Consensus 1 MkiLiI~gspr~~-s~t~~l~~~~~~~~-~~g--~~v~~~d 37 (196)
T 3lcm_A 1 MKILIVYTHPNPT-SFNAEILKQVQTNL-SKE--HTVSTLD 37 (196)
T ss_dssp CEEEEEECCSCTT-SHHHHHHHHHHHHS-CTT--SEEEEEE
T ss_pred CEEEEEEeCCCCC-ChHHHHHHHHHHHh-cCC--CeEEEEE
Confidence 7999987766543 3 234444555555 556 4444433
No 412
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=21.48 E-value=26 Score=28.84 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=13.8
Q ss_pred cccceEEEecCCCCCCCCcchhh
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVL 54 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~ 54 (464)
+++|||+++..+...+ +..+.+
T Consensus 2 ~~~mkil~I~GS~r~~-s~t~~l 23 (193)
T 3svl_A 2 AEKLQVVTLLGSLRKG-SFNGMV 23 (193)
T ss_dssp --CEEEEEEECCCSTT-CHHHHH
T ss_pred CCCCEEEEEEccCCCC-CHHHHH
Confidence 4579999998877654 444333
No 413
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=21.47 E-value=98 Score=27.90 Aligned_cols=39 Identities=18% Similarity=0.058 Sum_probs=24.6
Q ss_pred HHHHHHhcCcEEEEcCCCCCCChHHHHHHHhCCcEEEeC
Q 012436 348 DLVKLLGGAVVGIHSMIDEHFGISVVEYMAAGAIPIAHN 386 (464)
Q Consensus 348 ~~~~~l~~ad~~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 386 (464)
+..+++..+|+++..+-...---....++..|++||++.
T Consensus 72 d~~~l~~~vDvV~~aTp~~~h~~~a~~~l~aGk~Vi~sa 110 (334)
T 2czc_A 72 TLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQG 110 (334)
T ss_dssp BHHHHHTTCSEEEECCSTTHHHHHHHHHHHHTCEEEECT
T ss_pred cHHHhccCCCEEEECCCccccHHHHHHHHHcCCceEeec
Confidence 455556789988776432211112357888999999764
No 414
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=21.27 E-value=1.5e+02 Score=26.25 Aligned_cols=68 Identities=12% Similarity=0.026 Sum_probs=41.5
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCCc
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGAI 381 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~P 381 (464)
+++++-+.+... +..++.+++++.+. ...++.++++ .+|+++..+......-.+.+++..|++
T Consensus 24 ~~~~vav~d~~~-------~~~~~~~~~~g~~~--------~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~ 88 (332)
T 2glx_A 24 GGEVVSMMSTSA-------ERGAAYATENGIGK--------SVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKH 88 (332)
T ss_dssp TCEEEEEECSCH-------HHHHHHHHHTTCSC--------CBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCH-------HHHHHHHHHcCCCc--------ccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHHHHCCCe
Confidence 677765554321 34555666665421 1245666676 489888765444334446789999999
Q ss_pred EEEeC
Q 012436 382 PIAHN 386 (464)
Q Consensus 382 vI~~~ 386 (464)
|++-.
T Consensus 89 v~~ek 93 (332)
T 2glx_A 89 VLCEK 93 (332)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99843
No 415
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=21.23 E-value=4.6e+02 Score=23.70 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEc
Q 012436 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHS 362 (464)
Q Consensus 283 ~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 362 (464)
+...+++.+....+..+. .-.+++.++. ....+...+.+.+.+.+.|..-.+.-....+..++.+.+..+|.+++.
T Consensus 234 ~~~~~l~~~~~~~~~~~~---~~i~i~y~S~-~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g 309 (398)
T 1ycg_A 234 DPGRIIEAYARWAEGQGK---AKAVIAYDTM-WLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVG 309 (398)
T ss_dssp CHHHHHHHHHHHHHTCCC---SEEEEEECCS-SSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEE
T ss_pred CHHHHHHHHHHHhccCCc---CeEEEEEECC-ccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEE
Confidence 566677776655543211 2234444443 333334445555555444432122223444456666778899987664
Q ss_pred C--CCCCCChHH---HHHHH----hCCcEEEe
Q 012436 363 M--IDEHFGISV---VEYMA----AGAIPIAH 385 (464)
Q Consensus 363 s--~~e~~~~~~---~Ea~a----~G~PvI~~ 385 (464)
+ +..+.+-.+ ++.+. .|+++.+.
T Consensus 310 ~p~y~~~~~~~~~~~l~~l~~~~~~~k~~~~~ 341 (398)
T 1ycg_A 310 SPTINNDILPVVSPLLDDLVGLRPKNKVGLAF 341 (398)
T ss_dssp CCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEE
T ss_pred CCccCccchHHHHHHHHHHhccccCCCEEEEE
Confidence 3 455555443 34332 46766543
No 416
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=21.13 E-value=1.5e+02 Score=21.84 Aligned_cols=47 Identities=9% Similarity=0.054 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 012436 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (464)
Q Consensus 282 K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 343 (464)
-|+..++.+.+.+.++ +.++.++|-. +.+++..+..|+...+.+...
T Consensus 68 sGl~~L~~~~~~~~~~------g~~l~l~~~~---------~~v~~~l~~~gl~~~~~i~~s 114 (125)
T 2ka5_A 68 FSLGVIVNILKSISSS------GGFFALVSPN---------EKVERVLSLTNLDRIVKIYDT 114 (125)
T ss_dssp HHHHHHHHHHHHHHHH------TCEEEEECCC---------HHHHHHHHHTTSTTTSEEESS
T ss_pred HHHHHHHHHHHHHHHc------CCEEEEEeCC---------HHHHHHHHHcCCCceEEecCC
Confidence 3677778888877765 6788888865 567777777777665554443
No 417
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=21.11 E-value=81 Score=28.23 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=22.6
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
+...++|+|++. ||....=..+++.|.+.| ++|+.+...
T Consensus 14 ~~~~~~~~vlVt-------GatG~iG~~l~~~L~~~G--~~V~~~~r~ 52 (347)
T 4id9_A 14 LVPRGSHMILVT-------GSAGRVGRAVVAALRTQG--RTVRGFDLR 52 (347)
T ss_dssp -------CEEEE-------TTTSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred ccccCCCEEEEE-------CCCChHHHHHHHHHHhCC--CEEEEEeCC
Confidence 344466788875 455555567789999999 566666544
No 418
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=21.07 E-value=4e+02 Score=23.86 Aligned_cols=32 Identities=9% Similarity=-0.108 Sum_probs=18.1
Q ss_pred HhhhcCCcEEEecccccccchhh---hccCceEEE
Q 012436 135 ALCKFTPLYYFDTSGYAFTYPLA---RIFGCRVIC 166 (464)
Q Consensus 135 ~l~~~~~Dvv~~~~~~~~~~~~~---~~~~~p~v~ 166 (464)
++.+.++|+|+..........++ ...|+++++
T Consensus 66 ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~V~~ 100 (362)
T 1ydw_A 66 LLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILL 100 (362)
T ss_dssp HHHCTTCCEEEECCCGGGHHHHHHHHHTTTCEEEE
T ss_pred HhcCCCCCEEEEcCChHHHHHHHHHHHHCCCeEEE
Confidence 35566789887555544333322 256766665
No 419
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=21.02 E-value=1.2e+02 Score=27.43 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHh--cCcEEEEcCCCCCCChHHHHHHHhCC
Q 012436 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLG--GAVVGIHSMIDEHFGISVVEYMAAGA 380 (464)
Q Consensus 303 p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~ad~~v~ps~~e~~~~~~~Ea~a~G~ 380 (464)
|+++++-+.+... +..++.++++++. +... .++.++++ ..|+++..+....-.-.+.+++..|+
T Consensus 47 ~~~~lvav~d~~~-------~~~~~~a~~~g~~--~~~~-----~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk 112 (357)
T 3ec7_A 47 SGVEVVAVCDIVA-------GRAQAALDKYAIE--AKDY-----NDYHDLINDKDVEVVIITASNEAHADVAVAALNANK 112 (357)
T ss_dssp TTEEEEEEECSST-------THHHHHHHHHTCC--CEEE-----SSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEEeCCH-------HHHHHHHHHhCCC--Ceee-----CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCC
Confidence 4788876555432 3455666666642 1211 45556666 47888776544433444688999999
Q ss_pred cEEEeC
Q 012436 381 IPIAHN 386 (464)
Q Consensus 381 PvI~~~ 386 (464)
+|++-.
T Consensus 113 ~Vl~EK 118 (357)
T 3ec7_A 113 YVFCEK 118 (357)
T ss_dssp EEEEES
T ss_pred CEEeec
Confidence 999854
No 420
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=20.94 E-value=82 Score=26.24 Aligned_cols=36 Identities=6% Similarity=0.182 Sum_probs=22.6
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEE
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIV 72 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~ 72 (464)
+++||++-... +-+.....++++.|.+.|+++++++
T Consensus 3 ~~k~IllgvTG----aiaa~k~~~ll~~L~~~g~eV~vv~ 38 (209)
T 3zqu_A 3 GPERITLAMTG----ASGAQYGLRLLDCLVQEEREVHFLI 38 (209)
T ss_dssp SCSEEEEEECS----SSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEEEC----HHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34677765432 2344456799999999995555443
No 421
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=20.89 E-value=87 Score=28.39 Aligned_cols=41 Identities=12% Similarity=0.061 Sum_probs=24.9
Q ss_pred ccccccccceEEEecCCCCCCCCcchhhHHHHHHhhhh-CCCCceEEEccc
Q 012436 27 HNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEE-SPDLDCIVYTGD 76 (464)
Q Consensus 27 ~~~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~-g~~~~v~~~~~~ 76 (464)
.+|.+..+|+|++. ||....=..+++.|.+. | ++|+.++..
T Consensus 17 ~~~~~m~~~~vlVt-------GatG~iG~~l~~~L~~~~g--~~V~~~~r~ 58 (372)
T 3slg_A 17 QGPGSMKAKKVLIL-------GVNGFIGHHLSKRILETTD--WEVFGMDMQ 58 (372)
T ss_dssp ------CCCEEEEE-------SCSSHHHHHHHHHHHHHSS--CEEEEEESC
T ss_pred cCCcccCCCEEEEE-------CCCChHHHHHHHHHHhCCC--CEEEEEeCC
Confidence 34555566788875 45555566778999998 7 566676654
No 422
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=20.88 E-value=2.8e+02 Score=23.22 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhcCcEEEEcCC
Q 012436 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGGAVVGIHSMI 364 (464)
Q Consensus 285 ~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~ 364 (464)
..+++++.++++.. -++-++|....- ..++...+-+++ ++....+.+.+|+.+.+.
T Consensus 93 ~Dil~aL~~a~~~~------~kIavVg~~~~~------~~~~~i~~ll~~--~i~~~~~~~~ee~~~~i~---------- 148 (225)
T 2pju_A 93 YDVLQFLAKAGKLT------SSIGVVTYQETI------PALVAFQKTFNL--RLDQRSYITEEDARGQIN---------- 148 (225)
T ss_dssp HHHHHHHHHTTCTT------SCEEEEEESSCC------HHHHHHHHHHTC--CEEEEEESSHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhhC------CcEEEEeCchhh------hHHHHHHHHhCC--ceEEEEeCCHHHHHHHHH----------
Confidence 34566777665542 255666654332 344555555554 466666666677765443
Q ss_pred CCCCChHHHHHHHhCCcEEEeCCCCCccceecccCCccceeecCCHHHHHHHHHHHHc
Q 012436 365 DEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQQTGFLAQNAEEYADAIVKIIS 422 (464)
Q Consensus 365 ~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~v~~~~~~~~g~~~~~~~~la~~i~~l~~ 422 (464)
++..-|.=+|+.+... .++.... |-.+++..+.+++.+++.++..
T Consensus 149 ---------~l~~~G~~vVVG~~~~--~~~A~~~--Gl~~vlI~s~eSI~~Ai~eA~~ 193 (225)
T 2pju_A 149 ---------ELKANGTEAVVGAGLI--TDLAEEA--GMTGIFIYSAATVRQAFSDALD 193 (225)
T ss_dssp ---------HHHHTTCCEEEESHHH--HHHHHHT--TSEEEESSCHHHHHHHHHHHHH
T ss_pred ---------HHHHCCCCEEECCHHH--HHHHHHc--CCcEEEECCHHHHHHHHHHHHH
Confidence 4445555454443211 1222110 3344444456677777766654
No 423
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=20.76 E-value=3.9e+02 Score=23.84 Aligned_cols=12 Identities=17% Similarity=-0.061 Sum_probs=7.4
Q ss_pred HHHHHHHhcCCC
Q 012436 324 SLKDKSIELKVD 335 (464)
Q Consensus 324 ~l~~~~~~~~l~ 335 (464)
.+++.+.++|++
T Consensus 63 ~v~~~A~~~gIp 74 (329)
T 2bw0_A 63 PLGLEAEKDGVP 74 (329)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC
Confidence 345666777765
No 424
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=20.74 E-value=76 Score=26.39 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=22.1
Q ss_pred cceEEEecCCCCCCCCcchh--hHHHHHHhhhhCCCCceEE
Q 012436 34 TTSVAFFHPNTNDGGGGERV--LWCAVKAIQEESPDLDCIV 72 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~--~~~l~~~L~~~g~~~~v~~ 72 (464)
++||++... ||...+ ..++++.|.+.|.++++++
T Consensus 5 ~k~IllgiT-----Gsiaayk~~~~ll~~L~~~g~eV~vv~ 40 (207)
T 3mcu_A 5 GKRIGFGFT-----GSHCTYEEVMPHLEKLIAEGAEVRPVV 40 (207)
T ss_dssp TCEEEEEEC-----SCGGGGTTSHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEE-----ChHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 357776544 233344 6799999999996555443
No 425
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=20.72 E-value=2.3e+02 Score=20.03 Aligned_cols=105 Identities=9% Similarity=0.047 Sum_probs=58.3
Q ss_pred EEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHH--hCC
Q 012436 306 RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMA--AGA 380 (464)
Q Consensus 306 ~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a--~G~ 380 (464)
++.++.+.+ ...+.++...++.|. .+... -+.++..+.+.. .|++++-. ..+.-|..+++.+. .+.
T Consensus 4 ~ilivdd~~-----~~~~~l~~~L~~~g~--~v~~~--~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~ 74 (120)
T 3f6p_A 4 KILVVDDEK-----PIADILEFNLRKEGY--EVHCA--HDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDM 74 (120)
T ss_dssp EEEEECSCH-----HHHHHHHHHHHHTTC--EEEEE--SSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCS
T ss_pred eEEEEECCH-----HHHHHHHHHHHhCCE--EEEEe--CCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 566666532 445566666666543 24332 244666666654 57766543 23444555655553 356
Q ss_pred cEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 381 IPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 381 PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
|+|.......... .... |..+++.. +.+++..++..++.
T Consensus 75 ~ii~~t~~~~~~~~~~~~~~---ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 75 PIIMLTAKDSEIDKVIGLEI---GADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CEEEEEESSCHHHHHHHHHT---TCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CEEEEECCCChHHHHHHHhC---CcceeEcCCCCHHHHHHHHHHHHh
Confidence 7776432222111 2233 56677764 99999999988764
No 426
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=20.72 E-value=1.4e+02 Score=21.42 Aligned_cols=47 Identities=4% Similarity=-0.091 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccC
Q 012436 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (464)
Q Consensus 282 K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 343 (464)
-|+..++++.+.+.++ +.++.++|-. +.+++..+..|+.+.+.+...
T Consensus 59 sgl~~L~~~~~~~~~~------g~~l~l~~~~---------~~v~~~l~~~gl~~~~~i~~~ 105 (116)
T 1th8_B 59 SGLGVILGRYKQIKNV------GGQMVVCAVS---------PAVKRLFDMSGLFKIIRVEAD 105 (116)
T ss_dssp HHHHHHHHHHHHHHHT------TCCEEEESCC---------HHHHHHHHHHTGGGTSEEESS
T ss_pred HHHHHHHHHHHHHHHh------CCeEEEEeCC---------HHHHHHHHHhCCceeEEEeCC
Confidence 3667777777777664 5677888764 455566666665554544443
No 427
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=20.63 E-value=1e+02 Score=25.22 Aligned_cols=33 Identities=6% Similarity=0.109 Sum_probs=22.8
Q ss_pred ceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 35 mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
|||+++ ||....=..+++.|.+.| ++|++++..
T Consensus 1 MkvlVt-------GatG~iG~~l~~~L~~~g--~~V~~~~R~ 33 (221)
T 3ew7_A 1 MKIGII-------GATGRAGSRILEEAKNRG--HEVTAIVRN 33 (221)
T ss_dssp CEEEEE-------TTTSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred CeEEEE-------cCCchhHHHHHHHHHhCC--CEEEEEEcC
Confidence 677765 344445566789999999 677777654
No 428
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=20.55 E-value=3e+02 Score=24.50 Aligned_cols=33 Identities=15% Similarity=-0.033 Sum_probs=19.0
Q ss_pred HHhhhcCCcEEEecccccccchh---hhccCceEEE
Q 012436 134 EALCKFTPLYYFDTSGYAFTYPL---ARIFGCRVIC 166 (464)
Q Consensus 134 ~~l~~~~~Dvv~~~~~~~~~~~~---~~~~~~p~v~ 166 (464)
+++...++|+|+........... +...|+++++
T Consensus 58 ~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~ 93 (344)
T 3ezy_A 58 ELIEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFC 93 (344)
T ss_dssp HHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHhcCCCCCEEEEcCCCcchHHHHHHHHhcCCeEEE
Confidence 34566689988855554433332 2256777665
No 429
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=20.47 E-value=4.5e+02 Score=23.25 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=22.1
Q ss_pred ccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 33 ~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
..+||.|+-- ||+. +..+|+.|.++| ++|..+...
T Consensus 3 ~~~~i~~iGi-----Gg~G--ms~~A~~L~~~G--~~V~~~D~~ 37 (326)
T 3eag_A 3 AMKHIHIIGI-----GGTF--MGGLAAIAKEAG--FEVSGCDAK 37 (326)
T ss_dssp CCCEEEEESC-----CSHH--HHHHHHHHHHTT--CEEEEEESS
T ss_pred CCcEEEEEEE-----CHHH--HHHHHHHHHhCC--CEEEEEcCC
Confidence 3567877611 2443 334688999999 677776654
No 430
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=20.36 E-value=3.5e+02 Score=22.87 Aligned_cols=40 Identities=8% Similarity=-0.118 Sum_probs=22.4
Q ss_pred ccceEEEecCCCC--CCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 33 RTTSVAFFHPNTN--DGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 33 ~~mkI~~~~~~~~--~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
+..+|+++.+... .. -....+..+.+++.+.| +++.++..
T Consensus 4 ~~~~Ig~v~~~~~~~~~-~~~~~~~gi~~~a~~~g--~~~~~~~~ 45 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSD-FWSVLVEGAQMAAKEYE--IKLEFMAP 45 (289)
T ss_dssp -CCEEEEECSCCCSSSH-HHHHHHHHHHHHHHHHT--CEEEECCC
T ss_pred CCcEEEEEeCCCCCCch-HHHHHHHHHHHHHHHcC--CEEEEecC
Confidence 4468999887653 21 12234445556666777 56555443
No 431
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=20.27 E-value=4.5e+02 Score=23.23 Aligned_cols=78 Identities=9% Similarity=-0.029 Sum_probs=47.2
Q ss_pred CcEEEEEeccCCCCChHHHHHHHHHHHHHhcCCCCCcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhH
Q 012436 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRD 348 (464)
Q Consensus 269 ~~~i~~~G~~~~~K~~~~ll~a~~~l~~~~~~~~p~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~ 348 (464)
+..+.|+|-. ..=..-++.++..+ ++++.++|...-..++...+..++.+++.|. .+.+. .+
T Consensus 146 gl~va~vGD~--~~va~Sl~~~~~~~---------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~--~~~~~-----~d 207 (307)
T 3tpf_A 146 IAKVAFIGDS--NNMCNSWLITAAIL---------GFEISIAMPKNYKISPEIWEFAMKQALISGA--KISLG-----YD 207 (307)
T ss_dssp CCEEEEESCS--SHHHHHHHHHHHHH---------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTC--EEEEE-----SC
T ss_pred CCEEEEEcCC--CccHHHHHHHHHHc---------CCEEEEECCCccCCCHHHHHHHHHHHHHcCC--eEEEE-----cC
Confidence 5789999962 11123344444444 7899999974333333444555666666552 34433 35
Q ss_pred HHHHHhcCcEEEEcCC
Q 012436 349 LVKLLGGAVVGIHSMI 364 (464)
Q Consensus 349 ~~~~l~~ad~~v~ps~ 364 (464)
+.+.++.||++....|
T Consensus 208 ~~eav~~aDvvyt~~w 223 (307)
T 3tpf_A 208 KFEALKDKDVVITDTW 223 (307)
T ss_dssp HHHHHTTCSEEEECCS
T ss_pred HHHHhcCCCEEEecCc
Confidence 6677999999877654
No 432
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=20.27 E-value=3.1e+02 Score=25.56 Aligned_cols=31 Identities=13% Similarity=-0.028 Sum_probs=17.8
Q ss_pred hhhcCCcEEEecccccccchh---hhccCceEEE
Q 012436 136 LCKFTPLYYFDTSGYAFTYPL---ARIFGCRVIC 166 (464)
Q Consensus 136 l~~~~~Dvv~~~~~~~~~~~~---~~~~~~p~v~ 166 (464)
+.+.++|+|+..........+ +-..|+++++
T Consensus 146 l~~~~vD~V~iatp~~~h~~~~~~al~aGk~Vl~ 179 (433)
T 1h6d_A 146 AKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMC 179 (433)
T ss_dssp GGCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred hcCCCCCEEEEcCCchhHHHHHHHHHHCCCcEEE
Confidence 555679988765554433332 2256776655
No 433
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=20.23 E-value=3.6e+02 Score=22.93 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=23.4
Q ss_pred cccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 30 RRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 30 ~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
++.+..+|+++.+..... -....+..+.+++.+.| +++.++.
T Consensus 16 ~~~~~~~Ig~i~~~~~~~-~~~~~~~gi~~~~~~~g--~~~~~~~ 57 (293)
T 2iks_A 16 RAGRTRSIGLVIPDLENT-SYTRIANYLERQARQRG--YQLLIAC 57 (293)
T ss_dssp --CCCCEEEEEESCSCSH-HHHHHHHHHHHHHHHTT--CEEEEEE
T ss_pred hcCCCcEEEEEeCCCcCc-HHHHHHHHHHHHHHHCC--CEEEEEc
Confidence 345667899998764322 12334445555666677 5655544
No 434
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=20.21 E-value=2.3e+02 Score=19.92 Aligned_cols=107 Identities=12% Similarity=0.062 Sum_probs=58.7
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcCCCCcEEEccCCChhHHHHHHhc--CcEEEEcCC-CCCCChHHHHHHH--h
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRDLVKLLGG--AVVGIHSMI-DEHFGISVVEYMA--A 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~-~e~~~~~~~Ea~a--~ 378 (464)
..++.++.+.+ ...+.++...++.|. .+.... +..+..+.+.. .|++++-.. .+.-|..+++.+. .
T Consensus 3 ~~~ilivdd~~-----~~~~~l~~~l~~~~~--~v~~~~--~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 73 (123)
T 1xhf_A 3 TPHILIVEDEL-----VTRNTLKSIFEAEGY--DVFEAT--DGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQA 73 (123)
T ss_dssp CCEEEEECSCH-----HHHHHHHHHHHTTTC--EEEEES--SHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHC
T ss_pred CceEEEEeCCH-----HHHHHHHHHHhhCCc--EEEEeC--CHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 34667776542 444566666665543 233322 33566565554 577776432 3334555555543 4
Q ss_pred CCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 GAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|.......... .... |..+++.. +.+++...+..++.
T Consensus 74 ~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 74 NVALMFLTGRDNEVDKILGLEI---GADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp CCEEEEEESCCSHHHHHHHHHH---TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHhc---CcceEEeCCCCHHHHHHHHHHHHH
Confidence 677775432222121 2233 55677764 99999999987764
No 435
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=20.10 E-value=2.8e+02 Score=23.58 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=23.0
Q ss_pred ccccccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEc
Q 012436 29 ARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (464)
Q Consensus 29 ~~~~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~ 74 (464)
.++.+..+|+++.+. ... -....+..+.+++.+.| +++.++.
T Consensus 3 L~~~~~~~Igvi~~~-~~~-~~~~~~~gi~~~~~~~g--~~~~~~~ 44 (288)
T 2qu7_A 3 LKTGRSNIIAFIVPD-QNP-FFTEVLTEISHECQKHH--LHVAVAS 44 (288)
T ss_dssp ----CEEEEEEEESS-CCH-HHHHHHHHHHHHHGGGT--CEEEEEE
T ss_pred cccCCCCEEEEEECC-CCc-hHHHHHHHHHHHHHHCC--CEEEEEe
Confidence 455667789999876 222 23344455556677777 5555544
No 436
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=20.09 E-value=1.1e+02 Score=22.35 Aligned_cols=107 Identities=13% Similarity=0.054 Sum_probs=56.7
Q ss_pred CcEEEEEcCCCCCccHHHHHHHHHHHHhcC-CCCcEEEccCCChhHHHHHHhc--CcEEEEcC-CCCCCChHHHHHHHh-
Q 012436 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELK-VDGNVEFYKNLLYRDLVKLLGG--AVVGIHSM-IDEHFGISVVEYMAA- 378 (464)
Q Consensus 304 ~~~l~i~G~~~~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~~~~~~~~~l~~--ad~~v~ps-~~e~~~~~~~Ea~a~- 378 (464)
..+++++.+.+ ...+.++...++.| . .|..... .++..+.+.. .|++++-. ..+.-|..+++.+..
T Consensus 14 ~~~ilivdd~~-----~~~~~l~~~L~~~g~~--~v~~~~~--~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 84 (135)
T 3snk_A 14 RKQVALFSSDP-----NFKRDVATRLDALAIY--DVRVSET--DDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARAL 84 (135)
T ss_dssp CEEEEEECSCH-----HHHHHHHHHHHHTSSE--EEEEECG--GGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGG
T ss_pred CcEEEEEcCCH-----HHHHHHHHHHhhcCCe--EEEEecc--HHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhh
Confidence 45677776542 44566666666654 2 2332222 2444444433 57666532 233334444444432
Q ss_pred --CCcEEEeCCCCCccc---eecccCCccceeecC--CHHHHHHHHHHHHc
Q 012436 379 --GAIPIAHNSAGPKMD---IVLEEDGQQTGFLAQ--NAEEYADAIVKIIS 422 (464)
Q Consensus 379 --G~PvI~~~~~~~~~~---~v~~~~~~~~g~~~~--~~~~la~~i~~l~~ 422 (464)
.+|+|........+. .... |..+++.. +++++..+|..++.
T Consensus 85 ~~~~~ii~~s~~~~~~~~~~~~~~---g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 85 WATVPLIAVSDELTSEQTRVLVRM---NASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp GTTCCEEEEESCCCHHHHHHHHHT---TCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHc---CcHhhccCCCCHHHHHHHHHHHhc
Confidence 678876433222122 2233 56677764 99999999988765
No 437
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=20.09 E-value=2.7e+02 Score=24.38 Aligned_cols=38 Identities=5% Similarity=-0.032 Sum_probs=21.9
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~ 75 (464)
.+++||+++.+. ...-+..|..+..+-..+.++..+.+
T Consensus 87 ~~~~ri~vl~Sg------~g~nl~~ll~~~~~g~l~~~i~~Vis 124 (288)
T 3obi_A 87 ETRRKVMLLVSQ------SDHCLADILYRWRVGDLHMIPTAIVS 124 (288)
T ss_dssp TSCEEEEEEECS------CCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred CCCcEEEEEEcC------CCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence 457899987552 33455666776655433456555443
No 438
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=20.09 E-value=3e+02 Score=24.36 Aligned_cols=88 Identities=18% Similarity=0.121 Sum_probs=0.0
Q ss_pred cccceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEcccCCCCchhHHHHHHhhcCcccCCCceeeeeeccccc
Q 012436 32 NRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWI 111 (464)
Q Consensus 32 ~~~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (464)
..+.+|+++.+......=...+...+.+++.+.| +++.++.... +.....+...
T Consensus 1 ~~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g--~~~~~~~~~~--~~~~~~~~i~---------------------- 54 (350)
T 3h75_A 1 MSLTSVVFLNPGNSTETFWVSYSQFMQAAARDLG--LDLRILYAER--DPQNTLQQAR---------------------- 54 (350)
T ss_dssp --CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHT--CEEEEEECTT--CHHHHHHHHH----------------------
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHHHHHcC--CeEEEEECCC--CHHHHHHHHH----------------------
Q ss_pred ccccCcceehhhhchhhhHHHHHHhhh-cCCcEEEecccccccch---hhhccCceEEEE
Q 012436 112 EESTYPRFTMIGQSFGSVYLSWEALCK-FTPLYYFDTSGYAFTYP---LARIFGCRVICY 167 (464)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Dvv~~~~~~~~~~~---~~~~~~~p~v~~ 167 (464)
.++.. .++|.|+........-. .+...++|+|+.
T Consensus 55 ----------------------~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 55 ----------------------ELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIV 92 (350)
T ss_dssp ----------------------HHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEE
T ss_pred ----------------------HHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEE
No 439
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=20.02 E-value=3.2e+02 Score=24.03 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=23.4
Q ss_pred cceEEEecCCCCCCCCcchhhHHHHHHhhhhCCCCceEEEccc
Q 012436 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (464)
Q Consensus 34 ~mkI~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~~~v~~~~~~ 76 (464)
+++|+++++....- +..+--++..+.+.|++|.++++|..
T Consensus 4 ~~~vL~v~AHPDDe---~l~~ggtla~~~~~G~~V~vv~lT~G 43 (303)
T 1q74_A 4 TPRLLFVHAHPDDE---SLSNGATIAHYTSRGAQVHVVTCTLG 43 (303)
T ss_dssp CCEEEEEESSTTHH---HHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred CCeEEEEEeCCchH---HHhHHHHHHHHHHCCCcEEEEEEcCC
Confidence 57899887765432 11111223345556987887777754
Done!