BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012437
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RD3|A Chain A, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
pdb|2RD3|D Chain D, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
Length = 223
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 17 ATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYAFLGKEFHAL 76
A YT ++LA EG KG K +VAA A+ C Y + + +
Sbjct: 114 ANKSYTSYMLA------EGFKGSIK--------EVAA----AVLSCGWSYLVIAQNLSQI 155
Query: 77 LNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEV 136
NA E + Y WI YSS+ FQA N +LLD L+++ + +E++ +++++ + E
Sbjct: 156 PNALE-HAFYGHWIKGYSSKEFQACVNWNINLLDSLTLASSKQEIEKLKEIFITTSEYEY 214
Query: 137 EFF 139
F+
Sbjct: 215 LFW 217
>pdb|3IBX|A Chain A, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
pdb|3IBX|D Chain D, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
Length = 221
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 17 ATVKYTEFLLATASGKVEGVKGPGKLATPFEKTKVAAYTLGAMSPCMRLYAFLGKEFHAL 76
A YT ++LA EG KG K +VAA A+ C Y + + +
Sbjct: 112 ANKSYTSYMLA------EGFKGSIK--------EVAA----AVLSCGWSYLVIAQNLSQI 153
Query: 77 LNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEELDIIEKLYHQAMKLEV 136
NA E + Y WI YSS+ FQA N +LLD L+++ + +E++ +++++ + E
Sbjct: 154 PNALE-HAFYGHWIKGYSSKEFQACVNWNINLLDSLTLASSKQEIEKLKEIFITTSEYEY 212
Query: 137 EFF 139
F+
Sbjct: 213 LFW 215
>pdb|3RM5|A Chain A, Structure Of Trifunctional Thi20 From Yeast
pdb|3RM5|B Chain B, Structure Of Trifunctional Thi20 From Yeast
Length = 550
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 56 LGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVS 115
+ +++PC+ Y + + A EG+ Y +W + Y+S ++ + + E LL+ + +
Sbjct: 461 VASLTPCLMGYGEALTKMKGKVTAPEGSV-YHEWCETYASSWYREAMDEGEKLLNHILET 519
Query: 116 LTGEELDIIEKLYHQAMKLEVEFFCA 141
E+LD + +Y + +LE F+ A
Sbjct: 520 YPPEQLDTLVTIYAEVCELETNFWTA 545
>pdb|4FN6|A Chain A, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
pdb|4FN6|B Chain B, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
pdb|4FN6|C Chain C, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
pdb|4FN6|D Chain D, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
Length = 229
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 52 AAYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQN--EDLL 109
A YT+ AM+P +YA L K + N KW D YS+E + N E L+
Sbjct: 127 AIYTIAAMAPXPYIYAELAKRSQSDHKLNREKDT-AKWFDFYSTE---MDDIINVFESLM 182
Query: 110 DKLSVSLTGEELDIIEKLYHQAMKLEVEFF 139
+KL+ S++ +EL+ +++++ ++ E FF
Sbjct: 183 NKLAESMSDKELEQVKQVFLESCIHERRFF 212
>pdb|3MVU|A Chain A, Crystal Structure Of A Tena Family Transcription Regulator
(Tm1040_3656) From Silicibacter Sp. Tm1040 At 1.80 A
Resolu
Length = 226
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 61 PCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVSLTGEE 120
PC+ Y +GK L A + Y WID Y + +QA+ LLD G E
Sbjct: 140 PCVXGYGEIGKR----LTAEATSTLYGDWIDTYGGDDYQAACKAVGTLLDDALERRLGAE 195
Query: 121 L------DIIEKLYHQAMKLEVEFF 139
+ + +H A +LEV F+
Sbjct: 196 FTSSPRWSRLCQTFHTATELEVGFW 220
>pdb|1TYH|A Chain A, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|B Chain B, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|D Chain D, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|E Chain E, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
Length = 248
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 56 LGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVS 115
L A+ PC LY +G++ LL+ + G+ Y KWI Y + F+ + + D+L+ +
Sbjct: 131 LAALLPCYWLYYEVGEK---LLHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAEN 187
Query: 116 LTGE 119
T E
Sbjct: 188 STEE 191
>pdb|2QCX|A Chain A, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
pdb|2QCX|B Chain B, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
Length = 263
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 56 LGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVS 115
L A+ PC LY +G++ LL+ + G+ Y KWI Y + F+ + + D+L+ +
Sbjct: 156 LAALLPCYWLYYEVGEK---LLHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAEN 212
Query: 116 LTGE 119
T E
Sbjct: 213 STEE 216
>pdb|1TO9|A Chain A, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 56 LGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVS 115
L A+ PC LY +G++ LL+ + G+ Y KWI Y + F+ + + D+L+ +
Sbjct: 153 LAALLPCYWLYYEVGEK---LLHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAEN 209
Query: 116 LTGE 119
T E
Sbjct: 210 STEE 213
>pdb|1TO9|B Chain B, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 56 LGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVS 115
L A+ PC LY +G++ LL+ + G+ Y KWI Y + F+ + + D+L+ +
Sbjct: 153 LAALLPCYWLYYEVGEK---LLHXDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAEN 209
Query: 116 LTGE 119
T E
Sbjct: 210 STEE 213
>pdb|1YAF|A Chain A, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|B Chain B, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|C Chain C, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|D Chain D, Structure Of Tena From Bacillus Subtilis
pdb|1YAK|A Chain A, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|B Chain B, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|C Chain C, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|D Chain D, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
Length = 263
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 56 LGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDKLSVS 115
L A+ PC LY +G++ LL+ + G+ Y KWI Y + F+ + + D+L+ +
Sbjct: 156 LAALLPCYWLYYEVGEK---LLHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAEN 212
Query: 116 LTGE 119
T E
Sbjct: 213 STEE 216
>pdb|3NO6|A Chain A, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
pdb|3NO6|B Chain B, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
pdb|3NO6|C Chain C, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
pdb|3NO6|D Chain D, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
Length = 248
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 52 AAYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASALQNEDLLDK 111
AA+T+ A +PC +YA +GK N+ + +KW YS+E + + ++ L D+
Sbjct: 146 AAFTIAAXAPCPYVYAVIGKRAXEDPKLNKESVT-SKWFQFYSTEXDELVDVFDQ-LXDR 203
Query: 112 LSVSLTGEELDIIEKLYHQAMKLEVEFF 139
L+ + E I++ + Q+ E FF
Sbjct: 204 LTKHCSETEKKEIKENFLQSTIHERHFF 231
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 376 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 407
K + ++GD + D L +AD+GI +GS S +
Sbjct: 204 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 235
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 357 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 407
P +K + +KY ++ +GD V D L +AD+GI IG+ + +
Sbjct: 192 PHEKAEKVKEVQQKY------VTAMVGDGVNDAPALAQADVGIAIGAGTDV 236
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 344 SISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGS 403
SI E+IEK + + K +RK++ GD V D L +ADIGI +
Sbjct: 548 SIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVAD 607
Query: 404 SSSLRRVGSQFGVTFIPLYPGL 425
++ R S +T PGL
Sbjct: 608 ATDAARGASDIVLT----EPGL 625
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 357 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 407
P +K + +KY ++ +GD V D L +AD+GI IG+ + +
Sbjct: 192 PHEKAEKVKEVQQKY------VTAMVGDGVNDAPALAQADVGIAIGAGTDV 236
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 376 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 407
K + ++GD + D L +AD+GI +GS S +
Sbjct: 224 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 255
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 334 VHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLL 393
V ANE + TG ++ + K A ++ G +V +GD D+ L
Sbjct: 298 VAANELEIVDGTLTGRVVGPIIDRAGKATALREFAQRAGVPMAQ-TVAVGDGANDIDMLA 356
Query: 394 EADIGIVIGSSSSLRRV 410
A +GI + +LR V
Sbjct: 357 AAGLGIAFNAKPALREV 373
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 376 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 407
K + ++GD + D L +AD+GI +GS S +
Sbjct: 224 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 255
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 376 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 407
K + ++GD + D L +AD+GI +GS S +
Sbjct: 596 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 627
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 376 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 407
K + ++GD + D L +AD+GI +GS S +
Sbjct: 518 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 549
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 376 KNLSVYIGDSVGDLLCLLEADIGIVIGS 403
K + ++GD + D L +AD+GI +GS
Sbjct: 83 KEVVAFVGDGINDAPALAQADLGIAVGS 110
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 341 FKESISTGEIIEKVESPIDKV---QAFNNTLE-KYGTDRKNLSVYIGDSVGDLLCLLEAD 396
K ++ EI EK+E K+ N L G N + + + GD L D
Sbjct: 78 IKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDD 137
Query: 397 I-GIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYT 433
I I G+ S R + F VTF P Y L+K K+ T
Sbjct: 138 ICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDAT 175
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 341 FKESISTGEIIEKVESPIDKV---QAFNNTLE-KYGTDRKNLSVYIGDSVGDLLCLLEAD 396
K ++ EI EK+E K+ N L G N + + + GD L D
Sbjct: 79 IKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDD 138
Query: 397 I-GIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYT 433
I I G+ S R + F VTF P Y L+K K+ T
Sbjct: 139 ICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDAT 176
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 341 FKESISTGEIIEKVESPIDKV---QAFNNTLE-KYGTDRKNLSVYIGDSVGDLLCLLEAD 396
K ++ EI EK+E K+ N L G N + + + GD L D
Sbjct: 187 IKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDD 246
Query: 397 I-GIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYT 433
I I G+ S R + F VTF P Y L+K K+ T
Sbjct: 247 ICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDAT 284
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 341 FKESISTGEIIEKVESPIDKV---QAFNNTLE-KYGTDRKNLSVYIGDSVGDLLCLLEAD 396
K ++ EI EK+E K+ N L G N + + + GD L D
Sbjct: 187 IKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDD 246
Query: 397 I-GIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYT 433
I I G+ S R + F VTF P Y L+K K+ T
Sbjct: 247 ICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDAT 284
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 347 TGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI------- 399
TG+++ +V S K ++Y + N +V +GD DL+ + A +G+
Sbjct: 233 TGQVLGEVVSAQTKADILLTLAQQYDVEIHN-TVAVGDGANDLVMMAAAGLGVAYHAKPK 291
Query: 400 VIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYTEGSSSNWKEKSG 445
V + + R GV I L LV +QK +WK K G
Sbjct: 292 VEAKAQTAVRFAGLGGVVCI-LSAALVAQQK-------LSWKSKEG 329
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 374 DRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYT 433
D+ + GD V D L +ADIGI +G+ + + GVT + + K + +
Sbjct: 614 DKGLIVAMAGDGVNDAPALAKADIGIAMGTGTDVAI--ESAGVTLLHGDLRGIAKARRLS 671
Query: 434 EGSSSNWKE 442
E + SN ++
Sbjct: 672 ESTMSNIRQ 680
>pdb|3VB2|A Chain A, Crystal Structure Of The Reduced Form Of Marr From E.coli
pdb|3VB2|B Chain B, Crystal Structure Of The Reduced Form Of Marr From E.coli
Length = 144
Score = 28.5 bits (62), Expect = 8.9, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 44 TPFEKTKVAAYTLGAMSPCMRLYAFLGKEFHALLNANEGNHPYTKWIDNYSSESFQASAL 103
TP E KV + LGA++ + G L N N+ K ++ S Q+ L
Sbjct: 56 TPVELKKVLSVDLGALTRMLDRLVSKG-WVERLPNPNDKRGVLVKLTTGGAAISEQSHQL 114
Query: 104 QNEDLLDKLSVSLTGEELDIIEKLYHQAM 132
+DL +L+ +LT +E+ +E L + +
Sbjct: 115 VGQDLHQELTKNLTADEVATLEYLLKKVL 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,678,500
Number of Sequences: 62578
Number of extensions: 564610
Number of successful extensions: 1635
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1616
Number of HSP's gapped (non-prelim): 37
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)