Citrus Sinensis ID: 012438
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 463 | 2.2.26 [Sep-21-2011] | |||||||
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.995 | 0.903 | 0.695 | 0.0 | |
| Q8L7R8 | 514 | Sugar transport protein 3 | yes | no | 0.976 | 0.879 | 0.614 | 1e-156 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.969 | 0.858 | 0.548 | 1e-146 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.987 | 0.875 | 0.531 | 1e-143 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.967 | 0.866 | 0.533 | 1e-141 | |
| Q39228 | 514 | Sugar transport protein 4 | no | no | 0.989 | 0.891 | 0.541 | 1e-141 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.961 | 0.865 | 0.548 | 1e-141 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.984 | 0.888 | 0.507 | 1e-140 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.978 | 0.861 | 0.526 | 1e-139 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.967 | 0.871 | 0.522 | 1e-138 |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/463 (69%), Positives = 397/463 (85%), Gaps = 2/463 (0%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M+PFLKKFFPDVY+ M+EDT++ NYCKFDSQLLT+FTSSLY+ G++ S ASSVTRA GR
Sbjct: 49 MDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGR 108
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K SIL+GG FLA +ALGG+A N+YMLIFGR+LLGVG+GF NQ+VPLYLSEMAPP+YRG
Sbjct: 109 KPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGA 168
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
N GFQ IG LSANL+NYGT+KI+GGWGWRISLAMAA PA+ILT GA+FLPETPNS+
Sbjct: 169 INNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSL 228
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
IQRSNDH++A+ MLQRVRG DV+AEL+DLI+AS IS++I HPFKNI +RKYRPQLVMA+
Sbjct: 229 IQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAV 288
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQVTGIN++ Y+P+LFRT+ L ES S LLS++V G +G+ +SM++ DK GR
Sbjct: 289 AIPFFQQVTGINVIAFYAPILFRTIGLEESAS-LLSSIVTGLVGSASTFISMLIVDKLGR 347
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAW 360
+ LF+ GG+QM V+Q+M+GSIMAA+LGDHGG +GYAY++L+++C+Y +G+ +SWGPL W
Sbjct: 348 RALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGW 407
Query: 361 LVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFM 420
LVPSEIFPLEIRSAGQSI VAV+FLFTF+ AQTFL MLCHFK+GIFFFFGG V++MT F+
Sbjct: 408 LVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFV 467
Query: 421 HFFLPETKNVPIEQMDKVWREHWFWMKIV-EDVGEESKKIQQA 462
HF LPETK VPIE+MD VWR+HWFW KI+ E+ EE+ K++ A
Sbjct: 468 HFLLPETKKVPIEKMDIVWRDHWFWKKIIGEEAAEENNKMEAA 510
|
Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 550 bits (1418), Expect = e-156, Method: Compositional matrix adjust.
Identities = 285/464 (61%), Positives = 358/464 (77%), Gaps = 12/464 (2%)
Query: 1 MEPFLKKFFPDVYKNMREDTKV-GN----YCKFDSQLLTTFTSSLYITGILGSLIASSVT 55
M PFLK+FFP VYK ED + GN YC F+SQLLT+FTSSLY++G++ +L+ASSVT
Sbjct: 51 MGPFLKRFFPKVYKLQEEDRRRRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLASSVT 110
Query: 56 RALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPP 115
R+ GRK SI +GGV+FLAG+ALGGSA N+ MLI RLLLGVG+GF NQSVPLYLSEMAP
Sbjct: 111 RSWGRKPSIFLGGVSFLAGAALGGSAQNVAMLIIARLLLGVGVGFANQSVPLYLSEMAPA 170
Query: 116 KYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPE 175
KYRG + GFQLC IG LSAN++NY TQ IK GW RISLA AA PASILT+G++FLPE
Sbjct: 171 KYRGAISNGFQLCIGIGFLSANVINYETQNIKHGW--RISLATAAIPASILTLGSLFLPE 228
Query: 176 TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQ 235
TPNSIIQ + D K + ML+RVRG DV+ EL DL+ ASS S + ++ F + QRKYRP+
Sbjct: 229 TPNSIIQTTGDVHKTELMLRRVRGTNDVQDELTDLVEASSGSDTDSNAFLKLLQRKYRPE 288
Query: 236 LVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILA 295
LVMA++IPFFQQVTGIN+V Y+PVL+RT+ GES SL+ S LV G +GT ++SM++
Sbjct: 289 LVMALVIPFFQQVTGINVVAFYAPVLYRTVGFGESGSLM-STLVTGIVGTSSTLLSMLVV 347
Query: 296 DKFGRKVLFLVGGIQMLVSQVMIGSI-MAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYS 354
D+ GRK LFL+GG+QMLVSQV IG I M A + D G EGY Y ++V+VC+Y +G+ +S
Sbjct: 348 DRIGRKTLFLIGGLQMLVSQVTIGVIVMVADVHD-GVIKEGYGYAVVVLVCVYVAGFGWS 406
Query: 355 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVL 414
WGPL WLVPSEIFPLEIRS QS+TVAV+F+FTF AQ+ PMLC F+AGIFFF+GG ++
Sbjct: 407 WGPLGWLVPSEIFPLEIRSVAQSVTVAVSFVFTFAVAQSAPPMLCKFRAGIFFFYGGWLV 466
Query: 415 IMTTFMHFFLPETKNVPIEQMDKVWREHWFWMKIV--EDVGEES 456
+MT + FLPETKNVPIE++ +W +HWFW ++ D+ E +
Sbjct: 467 VMTVAVQLFLPETKNVPIEKVVGLWEKHWFWRRMTSKRDIQETT 510
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 519 bits (1337), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/454 (54%), Positives = 334/454 (73%), Gaps = 5/454 (1%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M+ FLKKFFP VY+ + D YC++DSQ LT FTSSLY+ ++ SL+AS++TR GR
Sbjct: 52 MDSFLKKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGR 111
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K+S+L GGV F AG+ + G+A ++MLI GR+LLG GIGF NQSVPLYLSEMAP KYRG
Sbjct: 112 KLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGA 171
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
NIGFQL IG+L AN+LNY KIKGGWGWR+SL A PA I+T+G++ LP+TPNS+
Sbjct: 172 LNIGFQLSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSM 231
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
I+R H++A+ L+RVRG+ DV+ E DL+ AS SK + HP++N+ QRKYRP L MAI
Sbjct: 232 IERGQ-HEEARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAI 290
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQ+TGIN++ Y+PVLF T+ G S + L+SA++ G + +VS+ DK+GR
Sbjct: 291 AIPFFQQLTGINVIMFYAPVLFDTIGFG-SDAALMSAVITGLVNVFATMVSIYGVDKWGR 349
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGG---FSEGYAYLILVMVCLYSSGYCYSWGP 357
+ LFL GG+QML+ Q ++ + + A+ G G + YA ++++ +C+Y SG+ +SWGP
Sbjct: 350 RFLFLEGGVQMLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGP 409
Query: 358 LAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMT 417
L WLVPSEIFPLEIRSA QS+ V+VN FTF+ AQ FL MLCH K G+F FF VLIM+
Sbjct: 410 LGWLVPSEIFPLEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMS 469
Query: 418 TFMHFFLPETKNVPIEQMDKVWREHWFWMKIVED 451
F+++FLPETK +PIE+M +VW++HW+W + V D
Sbjct: 470 IFVYYFLPETKGIPIEEMGQVWKQHWYWSRYVVD 503
|
Ricinus communis (taxid: 3988) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/463 (53%), Positives = 334/463 (72%), Gaps = 6/463 (1%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M FLK+FFP VY+ +ED YC++DS LT FTSSLY+ ++ SL+AS+VTR GR
Sbjct: 50 MPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGR 109
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
++S+L GG+ F AG+ + G A +++MLI GR+LLG GIGF NQ+VPLYLSEMAP KYRG
Sbjct: 110 RLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGA 169
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
NIGFQL IG+L A +LNY KIKGGWGWR+SL A PA I+TIG++ LP+TPNS+
Sbjct: 170 LNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSM 229
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
I+R H++A+ L+R+RG+ DV E +DL+ AS S+SI HP++N+ +RKYRP L MA+
Sbjct: 230 IER-GQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAV 288
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
+IPFFQQ+TGIN++ Y+PVLF T+ S L+SA+V G + +VS+ D++GR
Sbjct: 289 MIPFFQQLTGINVIMFYAPVLFNTIGFTTDAS-LMSAVVTGSVNVAATLVSIYGVDRWGR 347
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSE---GYAYLILVMVCLYSSGYCYSWGP 357
+ LFL GG QML+ Q ++ + + A+ G G E YA +++ +C+Y +G+ +SWGP
Sbjct: 348 RFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGP 407
Query: 358 LAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMT 417
L WLVPSEIFPLEIRSA QSITV+VN +FTF+ AQ FL MLCH K G+F F V++M+
Sbjct: 408 LGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMS 467
Query: 418 TFMHFFLPETKNVPIEQMDKVWREHWFWMKIVEDVGEESKKIQ 460
F++ FLPETK +PIE+M +VWR HW+W + VED GE ++
Sbjct: 468 IFVYIFLPETKGIPIEEMGQVWRSHWYWSRFVED-GEYGNALE 509
|
Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 502 bits (1293), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/454 (53%), Positives = 325/454 (71%), Gaps = 6/454 (1%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
ME FL KFFP+V K M E + YCKFD+QLL FTSSLY+ + S +AS+VTR GR
Sbjct: 52 MEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGR 111
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K+S+ +GGVAFL GS A N+ MLI GRLLLGVG+GF NQS P+YLSEMAP K RG
Sbjct: 112 KISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
NIGFQ+ IG+L ANL+NYGT ++ GWR+SL +AA PA I+ IG+ LP+TPNS+
Sbjct: 172 LNIGFQMAITIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSM 230
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQR-KYRPQLVMA 239
++R +++A++MLQ++RG +V+ E DL A +K + +P+KNI Q+ KYRP LV
Sbjct: 231 LERGK-YEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFC 289
Query: 240 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFG 299
IPFFQQ+TGIN++ Y+PVLF+TL + S L+SA++ G + V +VS+ D++G
Sbjct: 290 SAIPFFQQITGINVIMFYAPVLFKTLGFADDAS-LISAVITGAVNVVSTLVSIYAVDRYG 348
Query: 300 RKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGG--FSEGYAYLILVMVCLYSSGYCYSWGP 357
R++LFL GGIQM+VSQ+++G+++ + G G + A IL +CLY +G+ +SWGP
Sbjct: 349 RRILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGP 408
Query: 358 LAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMT 417
L WLVPSEI PLEIR AGQ+I V+VN FTFL Q FL MLCH K G+F+FFGG+V +MT
Sbjct: 409 LGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMT 468
Query: 418 TFMHFFLPETKNVPIEQMDKVWREHWFWMKIVED 451
F++F LPETK VPIE+M +VW++H FW + + D
Sbjct: 469 VFIYFLLPETKGVPIEEMGRVWKQHPFWKRYMPD 502
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1289), Expect = e-141, Method: Compositional matrix adjust.
Identities = 252/465 (54%), Positives = 332/465 (71%), Gaps = 7/465 (1%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
MEPFL++FFP VYK M+ + YC+FDSQLLT FTSSLY+ ++ SL AS++TR GR
Sbjct: 50 MEPFLEEFFPYVYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGR 108
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K S+ +GG F GSA G A NI ML+ GR+LLG G+GF NQSVP+YLSEMAPP RG
Sbjct: 109 KWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGA 168
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
FN GFQ+ G++ A ++NY T ++KG GWRISL +A PA ++ IGA+ LP+TPNS+
Sbjct: 169 FNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSL 228
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
I+R ++A++MLQ +RG +V+ E DLI AS SK + HP+KNI +YRPQL+M
Sbjct: 229 IERGYT-EEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTC 287
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQ+TGIN++ Y+PVLF+TL G S LLSA+V G + + VS+ D+FGR
Sbjct: 288 FIPFFQQLTGINVITFYAPVLFQTLGFGSKAS-LLSAMVTGIIELLCTFVSVFTVDRFGR 346
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLG--DHGGFSEGYAYLILVMVCLYSSGYCYSWGPL 358
++LFL GGIQMLVSQ+ IG+++ + G G + A LI+ ++C+Y +G+ +SWGPL
Sbjct: 347 RILFLQGGIQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPL 406
Query: 359 AWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTT 418
WLVPSEI PLEIRSA Q+I V+VN FTFL AQ FL MLCH K G+FFFF V+IMT
Sbjct: 407 GWLVPSEISPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTI 466
Query: 419 FMHFFLPETKNVPIEQMDKVWREHWFWMKIVED--VGEESKKIQQ 461
F++ LPETKNVPIE+M++VW+ HWFW K + D V + ++QQ
Sbjct: 467 FIYLMLPETKNVPIEEMNRVWKAHWFWGKFIPDEAVNMGAAEMQQ 511
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 500 bits (1288), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/450 (54%), Positives = 326/450 (72%), Gaps = 5/450 (1%)
Query: 1 MEPFLKKFFPDVYKNMREDT-KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALG 59
ME FL KFFPDV + M+ + YCK+D++LLT FTSSLY+ + S +AS++TR G
Sbjct: 51 MEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFG 110
Query: 60 RKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRG 119
RKVS++IG +AFL+G+ L G A N+ MLI GRL LGVG+GF NQSVPLYLSEMAP K RG
Sbjct: 111 RKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRG 170
Query: 120 TFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNS 179
NIGFQL IG+L+AN++NY T K++ G GWR+SL +A PA ++ +G FLP+TPNS
Sbjct: 171 ALNIGFQLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNS 230
Query: 180 IIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMA 239
I++R N +KA++MLQ++RG +VE E N+L A +K + HP+ NI Q +YRPQL
Sbjct: 231 ILERGN-KEKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFC 289
Query: 240 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFG 299
IPFFQQ+TGIN++ Y+PVLF+T+ G S L+SA++ G + + IVS+ DKFG
Sbjct: 290 TFIPFFQQLTGINVIMFYAPVLFKTIGFGNDAS-LISAVITGLVNVLSTIVSIYSVDKFG 348
Query: 300 RKVLFLVGGIQMLVSQVMIGSIMAAQLG--DHGGFSEGYAYLILVMVCLYSSGYCYSWGP 357
R+ LFL GG QM+V+Q+ +GS++ + G G S A +IL ++CLY +G+ +SWGP
Sbjct: 349 RRALFLQGGFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGP 408
Query: 358 LAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMT 417
L WLVPSEI PLEIRSAGQS+ V+VN FTF Q FL MLCH K G+F+FF G+VLIMT
Sbjct: 409 LGWLVPSEICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMT 468
Query: 418 TFMHFFLPETKNVPIEQMDKVWREHWFWMK 447
F++F LPETK VPIE+M KVW+EH +W K
Sbjct: 469 IFIYFLLPETKGVPIEEMGKVWKEHRYWGK 498
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/463 (50%), Positives = 336/463 (72%), Gaps = 7/463 (1%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M+ FL++FF VY+ ++ + NYCK+D+Q L FTSSLY+ G++ +L+AS +TR GR
Sbjct: 54 MDEFLEEFFHTVYEKKKQAHE-SNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGR 112
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
+ SI+ GG++FL GS L A N+ ML+ GR++LGVGIGFGNQ+VPLYLSE+AP RG
Sbjct: 113 RASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGG 172
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
N+ FQL IG+ +AN++NYGTQ++K WGWR+SL +AA PA ++T+G FLPETPNS+
Sbjct: 173 LNMMFQLATTIGIFTANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSL 231
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
++R ++ +++L ++RG +V AEL D++ AS ++ SI HPF+NI Q+++RPQLVMAI
Sbjct: 232 VERGLT-ERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAI 290
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
+P FQ +TGIN + Y+PVLF+T+ G + SL SAL G + + +S+ L D+ GR
Sbjct: 291 CMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSAL-TGAVLVLSTFISIGLVDRLGR 349
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAW 360
+ L + GGIQM++ QV++ I+ + GD+ S+GY+ ++++ +CL+ + +SWGPL W
Sbjct: 350 RALLITGGIQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGW 409
Query: 361 LVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFM 420
+PSEIFPLE RSAGQSITVAVN LFTF+ AQ FL +LC FK GIF FF G V +MT F+
Sbjct: 410 TIPSEIFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFV 469
Query: 421 HFFLPETKNVPIEQMDKVWREHWFWMKIVED---VGEESKKIQ 460
+F LPETK VPIE+M +W +HWFW K++ D + +ESK +
Sbjct: 470 YFLLPETKGVPIEEMTLLWSKHWFWKKVLPDATNLEDESKNVS 512
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 242/460 (52%), Positives = 324/460 (70%), Gaps = 7/460 (1%)
Query: 1 MEPFLKKFFPDVYKNMREDT-KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALG 59
M FL+KFFP VY+ + K NYCK+D+Q L FTSSLY+ G+ + AS TR LG
Sbjct: 50 MPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLG 109
Query: 60 RKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRG 119
R++++LI GV F+ G AL A ++ MLI GR+LLG G+GF NQ+VPL+LSE+AP + RG
Sbjct: 110 RRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRG 169
Query: 120 TFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNS 179
NI FQL IG+L ANL+NYGT KIKGGWGWR+SL +A PA +LT+GA+ + ETPNS
Sbjct: 170 GLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNS 229
Query: 180 IIQRSN-DHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVM 238
+++R D KA +L+R+RG +VE E DL+ AS ++K + HPF+N+ QR+ RPQLV+
Sbjct: 230 LVERGRLDEGKA--VLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVI 287
Query: 239 AILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKF 298
A+ + FQQ TGIN + Y+PVLF TL G S L SA+V G + + +VS+ DK
Sbjct: 288 AVALQIFQQCTGINAIMFYAPVLFSTLGFGSDAS-LYSAVVTGAVNVLSTLVSIYSVDKV 346
Query: 299 GRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHG-GFSEGYAYLILVMVCLYSSGYCYSWGP 357
GR+VL L G+QM SQV+I I+ ++ D S+G+A L++VM+C Y + + +SWGP
Sbjct: 347 GRRVLLLEAGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGP 406
Query: 358 LAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMT 417
L WL+PSE FPLE RSAGQS+TV VN LFTF+ AQ FL MLCHFK GIF FF VLIM+
Sbjct: 407 LGWLIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMS 466
Query: 418 TFMHFFLPETKNVPIEQM-DKVWREHWFWMKIVEDVGEES 456
F+ F LPETKN+PIE+M ++VW++HWFW + ++D +
Sbjct: 467 VFVMFLLPETKNIPIEEMTERVWKKHWFWARFMDDHNDHE 506
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/454 (52%), Positives = 321/454 (70%), Gaps = 6/454 (1%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
ME FL KFFP V M++ YCKFD+Q+L FTSSLY+ ++ S +AS +TR GR
Sbjct: 52 MEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGR 111
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
KVS+ IGG+AFL G+ A N+ MLI GRLLLGVG+GF NQS P+YLSEMAP K RG
Sbjct: 112 KVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
NIGFQ+ IG+L ANL+NYGT K+ GWR+SL +AA PA ++ IG+ LP+TPNS+
Sbjct: 172 LNIGFQMAITIGILVANLINYGTSKMAQH-GWRVSLGLAAVPAVVMVIGSFILPDTPNSM 230
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
++R + ++A++ML+++RG +V+ E DLI A +K + +P+KNI + KYRP L+
Sbjct: 231 LERGKN-EEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCS 289
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQ+TGIN++ Y+PVLF+TL G+ + L+SA++ G + + VS+ D++GR
Sbjct: 290 AIPFFQQITGINVIMFYAPVLFKTLGFGDDAA-LMSAVITGVVNMLSTFVSIYAVDRYGR 348
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDH--GGFSEGYAYLILVMVCLYSSGYCYSWGPL 358
++LFL GGIQM + Q+++GS + A+ G G + A IL +C+Y +G+ +SWGPL
Sbjct: 349 RLLFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPL 408
Query: 359 AWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTT 418
WLVPSEI PLEIR AGQ+I V+VN FTFL Q FL MLCH K G+F+FF +V IMT
Sbjct: 409 GWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTV 468
Query: 419 FMHFFLPETKNVPIEQMDKVWREHWFWMK-IVED 451
F++F LPETK VPIE+M +VW++HWFW K I ED
Sbjct: 469 FIYFLLPETKGVPIEEMGRVWKQHWFWKKYIPED 502
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 463 | ||||||
| 224129904 | 516 | predicted protein [Populus trichocarpa] | 0.987 | 0.885 | 0.693 | 0.0 | |
| 255539853 | 510 | sugar transporter, putative [Ricinus com | 0.995 | 0.903 | 0.697 | 0.0 | |
| 1708191 | 510 | RecName: Full=Hexose carrier protein HEX | 0.995 | 0.903 | 0.695 | 0.0 | |
| 357455795 | 509 | Hexose carrier [Medicago truncatula] gi| | 0.989 | 0.899 | 0.714 | 0.0 | |
| 47078687 | 508 | putative hexose transporter [Vitis vinif | 0.971 | 0.885 | 0.694 | 0.0 | |
| 225466031 | 508 | PREDICTED: hexose carrier protein HEX6 [ | 0.971 | 0.885 | 0.694 | 0.0 | |
| 147816021 | 508 | hypothetical protein VITISV_025873 [Viti | 0.984 | 0.897 | 0.687 | 0.0 | |
| 356517750 | 501 | PREDICTED: hexose carrier protein HEX6-l | 0.969 | 0.896 | 0.712 | 0.0 | |
| 357455797 | 510 | Hexose carrier protein HEX6 [Medicago tr | 0.987 | 0.896 | 0.679 | 0.0 | |
| 356515367 | 510 | PREDICTED: hexose carrier protein HEX6-l | 0.987 | 0.896 | 0.667 | 0.0 |
| >gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/464 (69%), Positives = 385/464 (82%), Gaps = 7/464 (1%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
MEPFLKKFFP+VY M+EDTK+ NYCKFDSQLLT+FTSSLY+ G++ S ASS+TR GR
Sbjct: 49 MEPFLKKFFPEVYARMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFFASSITRYFGR 108
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQS-------VPLYLSEMA 113
K SIL GG AFL+GSAL G+A N+YMLIFGR+LLGVG+GF NQ+ VPLYLSEMA
Sbjct: 109 KPSILAGGAAFLSGSALNGAATNLYMLIFGRVLLGVGVGFANQAGAEPRRAVPLYLSEMA 168
Query: 114 PPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFL 173
PP+YRG N GFQLC AIGVLSAN +N+GT+KI+GGWGWRISLAM A PA+ LTIG++FL
Sbjct: 169 PPRYRGAINNGFQLCIAIGVLSANFINFGTEKIEGGWGWRISLAMGAIPATFLTIGSLFL 228
Query: 174 PETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYR 233
PETPNS+IQR ND QKA+ MLQR+RG DVEAE NDLI+AS +SKSI HP K I Q+KYR
Sbjct: 229 PETPNSLIQRFNDEQKAKTMLQRIRGTTDVEAEFNDLIKASLVSKSIEHPIKKIIQKKYR 288
Query: 234 PQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMI 293
PQLVMAI IPFFQQVTGIN++ Y+P+LFRT+ L ES SL++SAL+AG +GT +SM+
Sbjct: 289 PQLVMAIAIPFFQQVTGINVISFYAPILFRTIGLSESVSLIMSALIAGVVGTASTFLSML 348
Query: 294 LADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCY 353
+ DK GR+V+ + GG+QM VSQ+MIGSIMAAQLGDHG ++GYAY +L M+ +Y SG+ +
Sbjct: 349 VVDKLGRRVMLICGGVQMFVSQIMIGSIMAAQLGDHGSINKGYAYFVLTMISIYVSGFAW 408
Query: 354 SWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLV 413
SWGPL WLVPSEIFPLEIRS GQSI VAVNF+FTF+ AQTFL MLCHFK+GIFFFFGG V
Sbjct: 409 SWGPLGWLVPSEIFPLEIRSVGQSIVVAVNFVFTFIVAQTFLAMLCHFKSGIFFFFGGWV 468
Query: 414 LIMTTFMHFFLPETKNVPIEQMDKVWREHWFWMKIVEDVGEESK 457
+MT F++ LPETK VPIE MD+VWREHWFW +IVE+ ++SK
Sbjct: 469 AVMTAFVYLLLPETKKVPIEVMDRVWREHWFWKRIVEEFDDKSK 512
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/463 (69%), Positives = 398/463 (85%), Gaps = 2/463 (0%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M+PFLKKFFPDVY+ M+EDT++ NYCKFDSQLLT+FTSSLY+ G++ S ASSVTRA GR
Sbjct: 49 MDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGR 108
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K SIL+GG FLAG+ALGG+A N+YMLIFGR+LLGVG+GF NQ+VPLYLSEMAPP+YRG
Sbjct: 109 KPSILLGGAVFLAGAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGA 168
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
N GFQ IG LSANL+NYGT+KI+GGWGWRISLAMAA PA+ILT GA+FLPETPNS+
Sbjct: 169 INNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSL 228
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
IQRSNDH++A+ MLQRVRG DV+AEL+DLI+AS IS++I HPFKNI +RKYRPQLVMA+
Sbjct: 229 IQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAV 288
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQVTGIN++ Y+P+LFRT+ L ES S LLS++V G +G+ +SM++ DK GR
Sbjct: 289 AIPFFQQVTGINVIAFYAPILFRTIGLEESAS-LLSSIVTGLVGSASTFISMLIVDKLGR 347
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAW 360
+ LF+ GG+QM V+Q+M+GSIMAA+LGDHGG +GYAY++L+++C+Y +G+ +SWGPL W
Sbjct: 348 RALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGW 407
Query: 361 LVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFM 420
LVPSEIFPLEIRSAGQSI VAV+FLFTF+ AQTFL MLCHFK+GIFFFFGG V++MT F+
Sbjct: 408 LVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFV 467
Query: 421 HFFLPETKNVPIEQMDKVWREHWFWMKIV-EDVGEESKKIQQA 462
HF LPETK VPIE+MD VWR+HWFW KI+ E+ EE+ K++ A
Sbjct: 468 HFLLPETKKVPIEKMDIVWRDHWFWKKIIGEEAAEENNKMEAA 510
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/463 (69%), Positives = 397/463 (85%), Gaps = 2/463 (0%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M+PFLKKFFPDVY+ M+EDT++ NYCKFDSQLLT+FTSSLY+ G++ S ASSVTRA GR
Sbjct: 49 MDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGR 108
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K SIL+GG FLA +ALGG+A N+YMLIFGR+LLGVG+GF NQ+VPLYLSEMAPP+YRG
Sbjct: 109 KPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGA 168
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
N GFQ IG LSANL+NYGT+KI+GGWGWRISLAMAA PA+ILT GA+FLPETPNS+
Sbjct: 169 INNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSL 228
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
IQRSNDH++A+ MLQRVRG DV+AEL+DLI+AS IS++I HPFKNI +RKYRPQLVMA+
Sbjct: 229 IQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAV 288
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQVTGIN++ Y+P+LFRT+ L ES S LLS++V G +G+ +SM++ DK GR
Sbjct: 289 AIPFFQQVTGINVIAFYAPILFRTIGLEESAS-LLSSIVTGLVGSASTFISMLIVDKLGR 347
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAW 360
+ LF+ GG+QM V+Q+M+GSIMAA+LGDHGG +GYAY++L+++C+Y +G+ +SWGPL W
Sbjct: 348 RALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGW 407
Query: 361 LVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFM 420
LVPSEIFPLEIRSAGQSI VAV+FLFTF+ AQTFL MLCHFK+GIFFFFGG V++MT F+
Sbjct: 408 LVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFV 467
Query: 421 HFFLPETKNVPIEQMDKVWREHWFWMKIV-EDVGEESKKIQQA 462
HF LPETK VPIE+MD VWR+HWFW KI+ E+ EE+ K++ A
Sbjct: 468 HFLLPETKKVPIEKMDIVWRDHWFWKKIIGEEAAEENNKMEAA 510
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/459 (71%), Positives = 381/459 (83%), Gaps = 1/459 (0%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M PFL+KFFPDVY M++D K+ NYCKFDSQLLTTFTSSLYI G+L S ASS+TRA GR
Sbjct: 50 MVPFLEKFFPDVYTKMKQDNKISNYCKFDSQLLTTFTSSLYIAGLLASFFASSITRAFGR 109
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K SIL+GG AFL G+ALGG+A NIYMLI GR+LLGVGIGF NQ+VPLYLSEMA P+YRG
Sbjct: 110 KPSILVGGAAFLIGAALGGAALNIYMLILGRVLLGVGIGFANQAVPLYLSEMALPRYRGA 169
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
NIGFQLC IGVLSANL+N+GT+KIK GWGWRISLAMAA PA+ILT+GA FLPETPNSI
Sbjct: 170 INIGFQLCVGIGVLSANLINFGTEKIKDGWGWRISLAMAAVPATILTLGAFFLPETPNSI 229
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
IQ S +HQKA+ MLQ +RG DV+ E DLI AS +S SI HPFKNI QRKYRPQLVMAI
Sbjct: 230 IQNSKNHQKAKLMLQSIRGTHDVQQEFEDLIEASIMSNSIKHPFKNILQRKYRPQLVMAI 289
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQ TGIN++ Y+P+LF T+ LGES S LLSA++ G +GT +SM++ DK GR
Sbjct: 290 AIPFFQQFTGINVISFYAPILFLTIGLGESAS-LLSAVMVGIVGTTSTFISMLIVDKLGR 348
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAW 360
+VLF+ GGIQM SQ++IGSIMAAQLGDHG S+ YAYLILV++C+Y +G+ +SWGPL W
Sbjct: 349 RVLFISGGIQMFFSQILIGSIMAAQLGDHGEISKKYAYLILVLICIYVAGFAWSWGPLGW 408
Query: 361 LVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFM 420
LVPSEIFPLEIRSA QSITVAVNFLFTF+ AQTFL MLCHFK G FFFFGG V+IMT F+
Sbjct: 409 LVPSEIFPLEIRSAAQSITVAVNFLFTFIVAQTFLSMLCHFKYGTFFFFGGWVVIMTVFV 468
Query: 421 HFFLPETKNVPIEQMDKVWREHWFWMKIVEDVGEESKKI 459
+F LPETKNVPIEQMD+VWREH+FW +IV D E + +
Sbjct: 469 YFLLPETKNVPIEQMDRVWREHFFWKRIVGDKIEGKQTV 507
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/451 (69%), Positives = 388/451 (86%), Gaps = 1/451 (0%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M+ FLKKFFP+VYK M+EDTK+ NYCKFDSQLLT+FTSSLYI G++ S +AS +T+ GR
Sbjct: 49 MDSFLKKFFPEVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGR 108
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K +IL GG AFL GSALGG+AFN+YM+I GR+LLGVG+GF NQ+VPLYLSEMAPP+YRG
Sbjct: 109 KPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGA 168
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
N GFQ +G LSANL+N+GT+KIKGGWGWR+SLA+AA PASILT+GA+FLPETPNS+
Sbjct: 169 INNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 228
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
IQRS D+ KA+ MLQRVRG DV+AEL+DL++ASS++K+I PFK I QRKYRPQLVMAI
Sbjct: 229 IQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAI 288
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQVTGIN++ Y+PVLFR + LG S S LLSA+V G +G +SM++ DK GR
Sbjct: 289 AIPFFQQVTGINVIAFYAPVLFRAIGLGVSAS-LLSAVVTGVVGMASTFISMLIVDKLGR 347
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAW 360
+VLFLVGGIQMLVSQ+M+G I+AA+LGDHGG S+ YA+L+L+++C+Y +G+ +SWGPL W
Sbjct: 348 RVLFLVGGIQMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYVAGFGWSWGPLGW 407
Query: 361 LVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFM 420
LVPSEIFPLEIRSAGQSITVAV+F+FTF+ AQTFL MLCHFK+GIFFFFGG V++MT F+
Sbjct: 408 LVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFFFGGWVVLMTAFV 467
Query: 421 HFFLPETKNVPIEQMDKVWREHWFWMKIVED 451
++ LPETK++PIEQMD+VW+EHWFW +IV +
Sbjct: 468 YYLLPETKSIPIEQMDRVWKEHWFWKRIVVE 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/451 (69%), Positives = 388/451 (86%), Gaps = 1/451 (0%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M+ FLKKFFP+VYK M+EDTK+ NYCKFDSQLLT+FTSSLYI G++ S +AS +T+ GR
Sbjct: 49 MDSFLKKFFPEVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGR 108
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K +IL GG AFL GSALGG+AFN+YM+I GR+LLGVG+GF NQ+VPLYLSEMAPP+YRG
Sbjct: 109 KPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGA 168
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
N GFQ +G LSANL+N+GT+KIKGGWGWR+SLA+AA PASILT+GA+FLPETPNS+
Sbjct: 169 INNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 228
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
IQRS D+ KA+ MLQRVRG DV+AEL+DL++ASS++K+I PFK I QRKYRPQLVMAI
Sbjct: 229 IQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAI 288
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQVTGIN++ Y+PVLFR + LG S S LLSA+V G +G +SM++ DK GR
Sbjct: 289 AIPFFQQVTGINVIAFYAPVLFRAIGLGVSAS-LLSAVVTGVVGMASTFISMLIVDKLGR 347
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAW 360
+VLFLVGGIQMLVSQ+M+G I+AA+LGDHGG S+ YA+L+L+++C+Y +G+ +SWGPL W
Sbjct: 348 RVLFLVGGIQMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYVAGFGWSWGPLGW 407
Query: 361 LVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFM 420
LVPSEIFPLEIRSAGQSITVAV+F+FTF+ AQTFL MLCHFK+GIFFFFGG V++MT F+
Sbjct: 408 LVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFFFGGWVVLMTAFV 467
Query: 421 HFFLPETKNVPIEQMDKVWREHWFWMKIVED 451
++ LPETK++PIEQMD+VW+EHWFW +IV +
Sbjct: 468 YYLLPETKSIPIEQMDRVWKEHWFWKRIVVE 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/457 (68%), Positives = 388/457 (84%), Gaps = 1/457 (0%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M+ FLKKFFP VYK M+EDTK+ NYCKFDSQLLT+FTSSLYI G++ S +AS +T+ GR
Sbjct: 49 MDSFLKKFFPXVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGR 108
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K +IL GG AFL GSALGG+AFN+YM+I GR+LLGVG+GF NQ+VPLYLSEMAPP+YRG
Sbjct: 109 KPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGA 168
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
N GFQ +G LSANL+N+GT+KIKGGWGWR+SLA+AA PASILT+GA+FLPETPNS+
Sbjct: 169 INNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 228
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
IQRS D+ KA+ MLQRVRG DV+AEL+DL++ASS++K+I PFK I QRKYRPQLVMAI
Sbjct: 229 IQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAI 288
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQVTGIN++ Y+PVLFR + LG S S LLSA+V G +G +SM++ DK GR
Sbjct: 289 AIPFFQQVTGINVIAFYAPVLFRAIGLGVSAS-LLSAVVTGVVGMASTFISMLIVDKLGR 347
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAW 360
+VLFLVGGIQMLVSQ+M+G I+AA+LGDHGG S+ YA+L+L+++C+Y +G+ +SWGPL W
Sbjct: 348 RVLFLVGGIQMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYVAGFGWSWGPLGW 407
Query: 361 LVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFM 420
LVPSEIFPLEIRSAGQSITVAV+F+FTF+ AQTFL MLCHFK+GIFFFFGG V++MT F+
Sbjct: 408 LVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFFFGGWVVLMTAFV 467
Query: 421 HFFLPETKNVPIEQMDKVWREHWFWMKIVEDVGEESK 457
++ LPETK++PIEQMD+VW+EHWFW +IV + K
Sbjct: 468 YYLLPETKSIPIEQMDRVWKEHWFWKRIVVEEXSNPK 504
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517750|ref|XP_003527549.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/449 (71%), Positives = 371/449 (82%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M PFL+KFFPDVY M++DTKV NYCKFDSQLLT FTSSLYI G++ S ASSVTRA GR
Sbjct: 49 MVPFLEKFFPDVYTKMKQDTKVSNYCKFDSQLLTAFTSSLYIAGLIASFFASSVTRAFGR 108
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K SILIGG AFL G+ALGG+A NIYMLI GR++LGVGIGF NQS PLYLSEMAPP+YRG
Sbjct: 109 KPSILIGGAAFLIGAALGGAALNIYMLILGRVMLGVGIGFANQSAPLYLSEMAPPRYRGA 168
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
N GFQLC IGVLSANL+N+GT+KIK GWGWRISL MAA PAS+LT G++FLPETPNSI
Sbjct: 169 INTGFQLCVGIGVLSANLVNFGTEKIKAGWGWRISLVMAAVPASMLTFGSLFLPETPNSI 228
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
IQ +HQKA+ MLQR+RG DV+ EL DLI AS +S SI HPFKNI RKYRPQLVMAI
Sbjct: 229 IQHDKNHQKAKLMLQRIRGTDDVQQELEDLIEASEMSNSIKHPFKNILHRKYRPQLVMAI 288
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQ TGIN++ Y+P+LF T+ LGES SLLLSA+V G +GT +SM++ D+ GR
Sbjct: 289 AIPFFQQFTGINVISFYAPILFLTIGLGESASLLLSAVVTGFVGTASTFISMLMVDRLGR 348
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAW 360
+VLF+ GGIQM SQV+IGSIMA QLGDHG + YAYLILV++C+Y +G+ +SWGPL W
Sbjct: 349 RVLFISGGIQMFFSQVLIGSIMATQLGDHGEIDKKYAYLILVLICIYVAGFAWSWGPLGW 408
Query: 361 LVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFM 420
LVPSEIF LEIRSA QSITVAVNF FTF+ AQTFL MLCHFK G FFFFGG V++MT F+
Sbjct: 409 LVPSEIFQLEIRSAAQSITVAVNFFFTFIVAQTFLIMLCHFKFGTFFFFGGWVVVMTAFV 468
Query: 421 HFFLPETKNVPIEQMDKVWREHWFWMKIV 449
+ LPET+NVPIEQMD+VWREH+FW +IV
Sbjct: 469 YLLLPETRNVPIEQMDRVWREHFFWKRIV 497
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455797|ref|XP_003598179.1| Hexose carrier protein HEX6 [Medicago truncatula] gi|355487227|gb|AES68430.1| Hexose carrier protein HEX6 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/459 (67%), Positives = 381/459 (83%), Gaps = 2/459 (0%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
MEPFL KFF ++Y M+ D KV NYC FDSQLLT+FTSSLY+ G + S AS VTR GR
Sbjct: 50 MEPFLNKFFHNIYLKMKSDDKVSNYCMFDSQLLTSFTSSLYVAGFVTSFFASYVTRVFGR 109
Query: 61 KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K SI+ GG AFLAG+ALGG+AFN+YMLI GRLLLGVG+GF NQ+VPLYLSEMA P++RG
Sbjct: 110 KPSIVAGGAAFLAGTALGGAAFNVYMLIVGRLLLGVGVGFANQAVPLYLSEMALPRFRGA 169
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
N GFQL IG LSANL+NYGT+KI+GGWGWR+SLAMAA PAS LT+GA+FLPETPNS+
Sbjct: 170 INNGFQLSIGIGALSANLINYGTEKIEGGWGWRVSLAMAAVPASFLTLGALFLPETPNSL 229
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSIT-HPFKNIAQRKYRPQLVMA 239
IQ + DHQKA+++LQR+RGI DVEAEL+DL +ASS SK+ + PFK I +R+YRPQLVMA
Sbjct: 230 IQTTQDHQKAKRILQRIRGIEDVEAELDDLTKASSTSKTSSQQPFKIIMKRRYRPQLVMA 289
Query: 240 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFG 299
I IPFFQQVTGIN++ Y+P+LFRT+ LGES S LLS+++ G +GT +SM + DK G
Sbjct: 290 IAIPFFQQVTGINVIAFYAPLLFRTIGLGESAS-LLSSVMTGIVGTGSTFISMFIVDKLG 348
Query: 300 RKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLA 359
R+ LF+VGGIQM VSQ ++G IMA L DHGG S+GYAY++L+M+C+Y +G+ +SWGPL
Sbjct: 349 RRTLFIVGGIQMFVSQCIVGGIMAVHLKDHGGLSKGYAYMVLIMICIYVAGFGWSWGPLG 408
Query: 360 WLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTF 419
WLVPSEIFPLEIRSAGQSITVAV+FLFTF+ AQTFL MLCHFK+GIFFFFGG V++MT F
Sbjct: 409 WLVPSEIFPLEIRSAGQSITVAVSFLFTFIVAQTFLSMLCHFKSGIFFFFGGWVVVMTVF 468
Query: 420 MHFFLPETKNVPIEQMDKVWREHWFWMKIVEDVGEESKK 458
++ FLPETKNVP+EQM+KVW+EHWFW KIV + ++ K
Sbjct: 469 VYCFLPETKNVPLEQMEKVWQEHWFWKKIVGKISDDRGK 507
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/460 (66%), Positives = 382/460 (83%), Gaps = 3/460 (0%)
Query: 1 MEPFLKKFFPDVYKNMR-EDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALG 59
MEPFLKKFF VY M+ D KV NYC FDSQLLT+FTSSLY+ G++ S AS +T+A G
Sbjct: 49 MEPFLKKFFHKVYLKMKLADDKVSNYCVFDSQLLTSFTSSLYVAGLVTSFFASYITKAFG 108
Query: 60 RKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRG 119
RK SI++GG AFLAG+ LGG+AFN+YMLI GRLLLGVG+GF NQ+VPLYLSEMA P+ RG
Sbjct: 109 RKPSIVVGGAAFLAGTGLGGAAFNVYMLIVGRLLLGVGVGFANQAVPLYLSEMALPRLRG 168
Query: 120 TFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNS 179
N GFQL IG LSANL+NYGT+KI+GGWGWR+SLAMAA PAS+LT+GA+FLPETPNS
Sbjct: 169 AINNGFQLSIGIGALSANLINYGTEKIEGGWGWRMSLAMAAVPASVLTLGALFLPETPNS 228
Query: 180 IIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSIT-HPFKNIAQRKYRPQLVM 238
+IQRS+D QKA+ MLQR+RG+ DV+AEL+DLI+ASS SK+ K I + +YRPQLVM
Sbjct: 229 VIQRSHDKQKAKLMLQRIRGMEDVQAELDDLIKASSPSKTNNKQSLKLILKGRYRPQLVM 288
Query: 239 AILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKF 298
A+ IPFFQQVTGIN++ Y+P+LFRT+ LGES S LLSA++ G +GT +SM + DK
Sbjct: 289 ALAIPFFQQVTGINVIAFYAPLLFRTIGLGESAS-LLSAVMTGVVGTGSTFISMFVVDKL 347
Query: 299 GRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPL 358
GR+ LF++GGIQM VSQ ++G IMA L DHGG S+GYA+++LVM+C+Y +G+ +SWGPL
Sbjct: 348 GRRTLFMIGGIQMFVSQCIVGGIMALHLKDHGGLSKGYAFVVLVMICIYVAGFGWSWGPL 407
Query: 359 AWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTT 418
WLVPSEIFPLEIRSAGQSITVAV+F+FTF+ AQTFL MLCHF++GIFFFFGG V++MTT
Sbjct: 408 GWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFRSGIFFFFGGWVVVMTT 467
Query: 419 FMHFFLPETKNVPIEQMDKVWREHWFWMKIVEDVGEESKK 458
F+++FLPETK+VP+EQM+KVW+EHWFW +IV +V + K
Sbjct: 468 FVYYFLPETKSVPLEQMEKVWQEHWFWKRIVGEVSDRQHK 507
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 463 | ||||||
| TAIR|locus:2151596 | 514 | AT5G61520 [Arabidopsis thalian | 0.971 | 0.875 | 0.560 | 2.8e-130 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.987 | 0.875 | 0.494 | 2.1e-123 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.978 | 0.881 | 0.503 | 1.2e-120 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.989 | 0.891 | 0.496 | 2e-120 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.967 | 0.866 | 0.484 | 5.6e-116 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.967 | 0.851 | 0.487 | 9.1e-116 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.967 | 0.871 | 0.482 | 3.9e-115 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.982 | 0.886 | 0.461 | 1.3e-114 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.974 | 0.894 | 0.459 | 4.9e-108 | |
| TAIR|locus:2009323 | 506 | AT1G34580 [Arabidopsis thalian | 0.961 | 0.879 | 0.444 | 1.2e-106 |
| TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1278 (454.9 bits), Expect = 2.8e-130, P = 2.8e-130
Identities = 259/462 (56%), Positives = 326/462 (70%)
Query: 1 MEPFLKKFFPDVYKNMREDTKV-GN----YCKFDSQLLTTFTSSLYITGILGSLIASSVT 55
M PFLK+FFP VYK ED + GN YC F+SQLLT+FTSSLY++G++ +L+ASSVT
Sbjct: 51 MGPFLKRFFPKVYKLQEEDRRRRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLASSVT 110
Query: 56 RALGRKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPP 115
R+ GRK SI + N+ MLI RLLLGVG+GF NQSVPLYLSEMAP
Sbjct: 111 RSWGRKPSIFLGGVSFLAGAALGGSAQNVAMLIIARLLLGVGVGFANQSVPLYLSEMAPA 170
Query: 116 KYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPE 175
KYRG + GFQLC IG LSAN++NY TQ IK GW RISLA AA PASILT+G++FLPE
Sbjct: 171 KYRGAISNGFQLCIGIGFLSANVINYETQNIKHGW--RISLATAAIPASILTLGSLFLPE 228
Query: 176 TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQ 235
TPNSIIQ + D K + ML+RVRG DV+ EL DL+ ASS S + ++ F + QRKYRP+
Sbjct: 229 TPNSIIQTTGDVHKTELMLRRVRGTNDVQDELTDLVEASSGSDTDSNAFLKLLQRKYRPE 288
Query: 236 LVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILA 295
LVMA++IPFFQQVTGIN+V Y+PVL+RT+ GES SL+ S LV G +GT ++SM++
Sbjct: 289 LVMALVIPFFQQVTGINVVAFYAPVLYRTVGFGESGSLM-STLVTGIVGTSSTLLSMLVV 347
Query: 296 DKFGRKVLFLVGGIQMLVSQVMIGSI-MAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYS 354
D+ GRK LFL+GG+QMLVSQV IG I M A + D G EGY Y ++V+VC+Y +G+ +S
Sbjct: 348 DRIGRKTLFLIGGLQMLVSQVTIGVIVMVADVHD-GVIKEGYGYAVVVLVCVYVAGFGWS 406
Query: 355 WGPLAWLVPSEIFPLEIRSAGQSITVAVNXXXXXXXXXXXXPMLCHFKAXXXXXXXXLVL 414
WGPL WLVPSEIFPLEIRS QS+TVAV+ PMLC F+A ++
Sbjct: 407 WGPLGWLVPSEIFPLEIRSVAQSVTVAVSFVFTFAVAQSAPPMLCKFRAGIFFFYGGWLV 466
Query: 415 IMTTFMHFFLPETKNVPIEQMDKVWREHWFWMKIVE--DVGE 454
+MT + FLPETKNVPIE++ +W +HWFW ++ D+ E
Sbjct: 467 VMTVAVQLFLPETKNVPIEKVVGLWEKHWFWRRMTSKRDIQE 508
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
Identities = 229/463 (49%), Positives = 311/463 (67%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M FLK+FFP VY+ +ED YC++DS LT FTSSLY+ ++ SL+AS+VTR GR
Sbjct: 50 MPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGR 109
Query: 61 KVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
++S+L +++MLI GR+LLG GIGF NQ+VPLYLSEMAP KYRG
Sbjct: 110 RLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGA 169
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
NIGFQL IG+L A +LNY KIKGGWGWR+SL A PA I+TIG++ LP+TPNS+
Sbjct: 170 LNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSM 229
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
I+R H++A+ L+R+RG+ DV E +DL+ AS S+SI HP++N+ +RKYRP L MA+
Sbjct: 230 IERGQ-HEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAV 288
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
+IPFFQQ+TGIN++ Y+PVLF T+ SL+ SA+V G + +VS+ D++GR
Sbjct: 289 MIPFFQQLTGINVIMFYAPVLFNTIGFTTDASLM-SAVVTGSVNVAATLVSIYGVDRWGR 347
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSE---GYAYLILVMVCLYSSGYCYSWGP 357
+ LFL GG QML+ Q ++ + + A+ G G E YA +++ +C+Y +G+ +SWGP
Sbjct: 348 RFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGP 407
Query: 358 LAWLVPSEIFPLEIRSAGQSITVAVNXXXXXXXXXXXXPMLCHFKAXXXXXXXXLVLIMT 417
L WLVPSEIFPLEIRSA QSITV+VN MLCH K V++M+
Sbjct: 408 LGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMS 467
Query: 418 TFMHFFLPETKNVPIEQMDKVWREHWFWMKIVEDVGEESKKIQ 460
F++ FLPETK +PIE+M +VWR HW+W + VED GE ++
Sbjct: 468 IFVYIFLPETKGIPIEEMGQVWRSHWYWSRFVED-GEYGNALE 509
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
Identities = 231/459 (50%), Positives = 308/459 (67%)
Query: 1 MEPFLKKFFPDVYKNMREDT-KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALG 59
ME FL KFFPDV + M+ + YCK+D++LLT FTSSLY+ + S +AS++TR G
Sbjct: 51 MEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFG 110
Query: 60 RKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRG 119
RKVS++I N+ MLI GRL LGVG+GF NQSVPLYLSEMAP K RG
Sbjct: 111 RKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRG 170
Query: 120 TFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNS 179
NIGFQL IG+L+AN++NY T K++ G GWR+SL +A PA ++ +G FLP+TPNS
Sbjct: 171 ALNIGFQLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNS 230
Query: 180 IIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMA 239
I++R N +KA++MLQ++RG +VE E N+L A +K + HP+ NI Q +YRPQL
Sbjct: 231 ILERGNK-EKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFC 289
Query: 240 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFG 299
IPFFQQ+TGIN++ Y+PVLF+T+ G SL+ SA++ G + + IVS+ DKFG
Sbjct: 290 TFIPFFQQLTGINVIMFYAPVLFKTIGFGNDASLI-SAVITGLVNVLSTIVSIYSVDKFG 348
Query: 300 RKVLFLVGGIQMLVSQVMIGSIMAAQLGDHG-GFSEGY-AYLILVMVCLYSSGYCYSWGP 357
R+ LFL GG QM+V+Q+ +GS++ + G +G G G A +IL ++CLY +G+ +SWGP
Sbjct: 349 RRALFLQGGFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGP 408
Query: 358 LAWLVPSEIFPLEIRSAGQSITVAVNXXXXXXXXXXXXPMLCHFKAXXXXXXXXLVLIMT 417
L WLVPSEI PLEIRSAGQS+ V+VN MLCH K +VLIMT
Sbjct: 409 LGWLVPSEICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMT 468
Query: 418 TFMHFFLPETKNVPIEQMDKVWREHWFWMKIVE-DVGEE 455
F++F LPETK VPIE+M KVW+EH +W K D G++
Sbjct: 469 IFIYFLLPETKGVPIEEMGKVWKEHRYWGKYSNNDDGDD 507
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
Identities = 231/465 (49%), Positives = 310/465 (66%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
MEPFL++FFP VYK M+ + YC+FDSQLLT FTSSLY+ ++ SL AS++TR GR
Sbjct: 50 MEPFLEEFFPYVYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGR 108
Query: 61 KVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K S+ + NI ML+ GR+LLG G+GF NQSVP+YLSEMAPP RG
Sbjct: 109 KWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGA 168
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
FN GFQ+ G++ A ++NY T ++KG GWRISL +A PA ++ IGA+ LP+TPNS+
Sbjct: 169 FNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSL 228
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
I+R ++A++MLQ +RG +V+ E DLI AS SK + HP+KNI +YRPQL+M
Sbjct: 229 IERGYT-EEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTC 287
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQ+TGIN++ Y+PVLF+TL G SLL SA+V G + + VS+ D+FGR
Sbjct: 288 FIPFFQQLTGINVITFYAPVLFQTLGFGSKASLL-SAMVTGIIELLCTFVSVFTVDRFGR 346
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLG--DHGGFSEGYAYLILVMVCLYSSGYCYSWGPL 358
++LFL GGIQMLVSQ+ IG+++ + G G + A LI+ ++C+Y +G+ +SWGPL
Sbjct: 347 RILFLQGGIQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPL 406
Query: 359 AWLVPSEIFPLEIRSAGQSITVAVNXXXXXXXXXXXXPMLCHFKAXXXXXXXXLVLIMTT 418
WLVPSEI PLEIRSA Q+I V+VN MLCH K V+IMT
Sbjct: 407 GWLVPSEISPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTI 466
Query: 419 FMHFFLPETKNVPIEQMDKVWREHWFWMKIVED--VGEESKKIQQ 461
F++ LPETKNVPIE+M++VW+ HWFW K + D V + ++QQ
Sbjct: 467 FIYLMLPETKNVPIEEMNRVWKAHWFWGKFIPDEAVNMGAAEMQQ 511
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
Identities = 220/454 (48%), Positives = 301/454 (66%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
ME FL KFFP+V K M E + YCKFD+QLL FTSSLY+ + S +AS+VTR GR
Sbjct: 52 MEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGR 111
Query: 61 KVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
K+S+ + N+ MLI GRLLLGVG+GF NQS P+YLSEMAP K RG
Sbjct: 112 KISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
NIGFQ+ IG+L ANL+NYGT ++ GWR+SL +AA PA I+ IG+ LP+TPNS+
Sbjct: 172 LNIGFQMAITIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSM 230
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQR-KYRPQLVMA 239
++R +++A++MLQ++RG +V+ E DL A +K + +P+KNI Q+ KYRP LV
Sbjct: 231 LERGK-YEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFC 289
Query: 240 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFG 299
IPFFQQ+TGIN++ Y+PVLF+TL + SL+ SA++ G + V +VS+ D++G
Sbjct: 290 SAIPFFQQITGINVIMFYAPVLFKTLGFADDASLI-SAVITGAVNVVSTLVSIYAVDRYG 348
Query: 300 RKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGG--FSEGYAYLILVMVCLYSSGYCYSWGP 357
R++LFL GGIQM+VSQ+++G+++ + G G + A IL +CLY +G+ +SWGP
Sbjct: 349 RRILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGP 408
Query: 358 LAWLVPSEIFPLEIRSAGQSITVAVNXXXXXXXXXXXXPMLCHFKAXXXXXXXXLVLIMT 417
L WLVPSEI PLEIR AGQ+I V+VN MLCH K +V +MT
Sbjct: 409 LGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMT 468
Query: 418 TFMHFFLPETKNVPIEQMDKVWREHWFWMKIVED 451
F++F LPETK VPIE+M +VW++H FW + + D
Sbjct: 469 VFIYFLLPETKGVPIEEMGRVWKQHPFWKRYMPD 502
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
Identities = 222/455 (48%), Positives = 301/455 (66%)
Query: 1 MEPFLKKFFPDVYKNMREDT-KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALG 59
M FL+KFFP VY+ + K NYCK+D+Q L FTSSLY+ G+ + AS TR LG
Sbjct: 50 MPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLG 109
Query: 60 RKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRG 119
R++++LI ++ MLI GR+LLG G+GF NQ+VPL+LSE+AP + RG
Sbjct: 110 RRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRG 169
Query: 120 TFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNS 179
NI FQL IG+L ANL+NYGT KIKGGWGWR+SL +A PA +LT+GA+ + ETPNS
Sbjct: 170 GLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNS 229
Query: 180 IIQRSN-DHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVM 238
+++R D KA +L+R+RG +VE E DL+ AS ++K + HPF+N+ QR+ RPQLV+
Sbjct: 230 LVERGRLDEGKA--VLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVI 287
Query: 239 AILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKF 298
A+ + FQQ TGIN + Y+PVLF TL G SL SA+V G + + +VS+ DK
Sbjct: 288 AVALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLY-SAVVTGAVNVLSTLVSIYSVDKV 346
Query: 299 GRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHG-GFSEGYAYLILVMVCLYSSGYCYSWGP 357
GR+VL L G+QM SQV+I I+ ++ D S+G+A L++VM+C Y + + +SWGP
Sbjct: 347 GRRVLLLEAGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGP 406
Query: 358 LAWLVPSEIFPLEIRSAGQSITVAVNXXXXXXXXXXXXPMLCHFKAXXXXXXXXLVLIMT 417
L WL+PSE FPLE RSAGQS+TV VN MLCHFK VLIM+
Sbjct: 407 LGWLIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMS 466
Query: 418 TFMHFFLPETKNVPIEQM-DKVWREHWFWMKIVED 451
F+ F LPETKN+PIE+M ++VW++HWFW + ++D
Sbjct: 467 VFVMFLLPETKNIPIEEMTERVWKKHWFWARFMDD 501
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
Identities = 219/454 (48%), Positives = 300/454 (66%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
ME FL KFFP V M++ YCKFD+Q+L FTSSLY+ ++ S +AS +TR GR
Sbjct: 52 MEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGR 111
Query: 61 KVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
KVS+ I N+ MLI GRLLLGVG+GF NQS P+YLSEMAP K RG
Sbjct: 112 KVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
NIGFQ+ IG+L ANL+NYGT K+ GWR+SL +AA PA ++ IG+ LP+TPNS+
Sbjct: 172 LNIGFQMAITIGILVANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSM 230
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
++R + ++A++ML+++RG +V+ E DLI A +K + +P+KNI + KYRP L+
Sbjct: 231 LERGKN-EEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCS 289
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
IPFFQQ+TGIN++ Y+PVLF+TL G+ +L+ SA++ G + + VS+ D++GR
Sbjct: 290 AIPFFQQITGINVIMFYAPVLFKTLGFGDDAALM-SAVITGVVNMLSTFVSIYAVDRYGR 348
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHG-G-FSEGYAYLILVMVCLYSSGYCYSWGPL 358
++LFL GGIQM + Q+++GS + A+ G G G + A IL +C+Y +G+ +SWGPL
Sbjct: 349 RLLFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPL 408
Query: 359 AWLVPSEIFPLEIRSAGQSITVAVNXXXXXXXXXXXXPMLCHFKAXXXXXXXXLVLIMTT 418
WLVPSEI PLEIR AGQ+I V+VN MLCH K +V IMT
Sbjct: 409 GWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTV 468
Query: 419 FMHFFLPETKNVPIEQMDKVWREHWFWMKIV-ED 451
F++F LPETK VPIE+M +VW++HWFW K + ED
Sbjct: 469 FIYFLLPETKGVPIEEMGRVWKQHWFWKKYIPED 502
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
Identities = 213/462 (46%), Positives = 311/462 (67%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M+ FL++FF VY+ ++ + NYCK+D+Q L FTSSLY+ G++ +L+AS +TR GR
Sbjct: 54 MDEFLEEFFHTVYEKKKQAHE-SNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGR 112
Query: 61 KVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
+ SI+ N+ ML+ GR++LGVGIGFGNQ+VPLYLSE+AP RG
Sbjct: 113 RASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGG 172
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
N+ FQL IG+ +AN++NYGTQ++K WGWR+SL +AA PA ++T+G FLPETPNS+
Sbjct: 173 LNMMFQLATTIGIFTANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSL 231
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240
++R ++ +++L ++RG +V AEL D++ AS ++ SI HPF+NI Q+++RPQLVMAI
Sbjct: 232 VERGLT-ERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAI 290
Query: 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300
+P FQ +TGIN + Y+PVLF+T+ G + SL SAL G + + +S+ L D+ GR
Sbjct: 291 CMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSALT-GAVLVLSTFISIGLVDRLGR 349
Query: 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAW 360
+ L + GGIQM++ QV++ I+ + GD+ S+GY+ ++++ +CL+ + +SWGPL W
Sbjct: 350 RALLITGGIQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGW 409
Query: 361 LVPSEIFPLEIRSAGQSITVAVNXXXXXXXXXXXXPMLCHFKAXXXXXXXXLVLIMTTFM 420
+PSEIFPLE RSAGQSITVAVN +LC FK V +MT F+
Sbjct: 410 TIPSEIFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFV 469
Query: 421 HFFLPETKNVPIEQMDKVWREHWFWMKIVED---VGEESKKI 459
+F LPETK VPIE+M +W +HWFW K++ D + +ESK +
Sbjct: 470 YFLLPETKGVPIEEMTLLWSKHWFWKKVLPDATNLEDESKNV 511
|
|
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1068 (381.0 bits), Expect = 4.9e-108, P = 4.9e-108
Identities = 209/455 (45%), Positives = 293/455 (64%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M+ FLK+FFP +YK + +YCK+D+Q+LT FTSSLY G++ + AS VTR GR
Sbjct: 53 MDDFLKEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGR 112
Query: 61 KVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
+ SIL+ NI MLI GR+ LG+GIGFGNQ+VPLYLSEMAP K RGT
Sbjct: 113 RGSILVGSVSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGT 172
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
N FQL IG+L ANL+NY T++I WGWR+SL +A PA ++ +G + LPETPNS+
Sbjct: 173 VNQLFQLTTCIGILVANLINYKTEQIHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSL 231
Query: 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVM-A 239
+++ +KA+ +L +VRG ++EAE DL+ AS ++++ +PF+N+ R+ RPQLV+ A
Sbjct: 232 VEQGK-LEKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGA 290
Query: 240 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFG 299
I +P FQQ+TG+N + Y+PV+F++L G S SL+ S + + V AI+SM ADKFG
Sbjct: 291 IGLPAFQQLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAAL-VVAAIMSMYSADKFG 349
Query: 300 RKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLA 359
R+ L L ++M V++G +A + G+ + +++V++CL+ Y SWGP+
Sbjct: 350 RRFLLLEASVEMFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICLFVLAYGRSWGPMG 409
Query: 360 WLVPSEIFPLEIRSAGQSITVAVNXXXXXXXXXXXXPMLCHFKAXXXXXXXXLVLIMTTF 419
WLVPSE+FPLE RSAGQS+ V VN LCH K L+L M +F
Sbjct: 410 WLVPSELFPLETRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSF 469
Query: 420 MHFFLPETKNVPIEQMDKVWREHWFWMKIVEDVGE 454
++F LPETK VPIE++ +WR+HW W K VEDV E
Sbjct: 470 VYFLLPETKQVPIEEVYLLWRQHWLWKKYVEDVDE 504
|
|
| TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 203/457 (44%), Positives = 300/457 (65%)
Query: 1 MEPFLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR 60
M+PFL+KFFP V K E K YC +DSQLLT FTSSLY+ G++ SL+AS +T A GR
Sbjct: 51 MKPFLEKFFPSVLKKASE-AKTNVYCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGR 109
Query: 61 KVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT 120
+ ++++ NI MLI GR+LLG G+GF NQ+ P+YLSE+APP++RG
Sbjct: 110 RTTMILGGFTFLFGALINGLAANIAMLISGRILLGFGVGFTNQAAPVYLSEVAPPRWRGA 169
Query: 121 FNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180
FNIGF ++GV++ANL+NYGT + GW RISL +AA PA+I+T+G +F+ +TP+S+
Sbjct: 170 FNIGFSCFISMGVVAANLINYGTDSHRNGW--RISLGLAAVPAAIMTVGCLFISDTPSSL 227
Query: 181 IQRSNDHQKAQKMLQRVRG---IADVEAELNDLIRASSIS-KSITHPF-KNIAQRKYRPQ 235
+ R H +A L ++RG IADVE EL +L+R+S ++ ++ F K I QR+YRP
Sbjct: 228 LARGK-HDEAHTSLLKLRGVENIADVETELAELVRSSQLAIEARAELFMKTILQRRYRPH 286
Query: 236 LVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILA 295
LV+A++IP FQQ+TGI + Y+PVLFR++ G +L+ + + G + ++S ++
Sbjct: 287 LVVAVVIPCFQQLTGITVNAFYAPVLFRSVGFGSGPALI-ATFILGFVNLGSLLLSTMVI 345
Query: 296 DKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLG--DHGGFSEGYAYLILVMVCLYSSGYCY 353
D+FGR+ LF+ GGI ML+ Q+ + ++A +G G +GYA ++V++C+Y++G+ +
Sbjct: 346 DRFGRRFLFIAGGILMLLCQIAVAVLLAVTVGATGDGEMKKGYAVTVVVLLCIYAAGFGW 405
Query: 354 SWGPLAWLVPSEIFPLEIRSAGQSITVAVNXXXXXXXXXXXXPMLCHFKAXXXXXXXXLV 413
SWGPL+WLVPSEIFPL+IR AGQS++VAVN LC FK +
Sbjct: 406 SWGPLSWLVPSEIFPLKIRPAGQSLSVAVNFAATFALSQTFLATLCDFKYGAFLFYGGWI 465
Query: 414 LIMTTFMHFFLPETKNVPIEQMDKVWREHWFWMKIVE 450
MT F+ FLPETK +P++ M +VW +HW+W + +
Sbjct: 466 FTMTIFVIMFLPETKGIPVDSMYQVWEKHWYWQRFTK 502
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q41144 | STC_RICCO | No assigned EC number | 0.5484 | 0.9697 | 0.8585 | N/A | no |
| Q8L7R8 | STP3_ARATH | No assigned EC number | 0.6142 | 0.9762 | 0.8793 | yes | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.6954 | 0.9956 | 0.9039 | N/A | no |
| Q10710 | STA_RICCO | No assigned EC number | 0.5042 | 0.9913 | 0.8793 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | HT4 | SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (508 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00002307001 | SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (506 aa) | • | 0.481 | |||||||
 | VvSUC11 | SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (501 aa) | • | 0.480 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 463 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-91 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-83 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 7e-49 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-14 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 8e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-10 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 4e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 7e-05 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 9e-05 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 3e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.001 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 0.002 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 0.002 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 284 bits (730), Expect = 1e-91
Identities = 142/442 (32%), Positives = 235/442 (53%), Gaps = 26/442 (5%)
Query: 4 FLKKFFPDVYKNMREDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVS 63
F K+F + V L S + ++GSL A + GRK S
Sbjct: 28 FFKRFGALTSIGACAASTV---------LSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKS 78
Query: 64 ILIGGVAFLAGSALGGSA--FNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTF 121
+LIG V F+ G+ L G A + YMLI GR+++G+G+G + VP+Y+SE+AP K RG
Sbjct: 79 LLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGAL 138
Query: 122 NIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSII 181
+QL G+L A ++ G K GWRI L + PA +L IG +FLPE+P ++
Sbjct: 139 GSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLV 198
Query: 182 QRSNDHQKAQKMLQRVRGIADVEAELNDLI----RASSISKSITHPFKNIAQRKYRPQLV 237
+ ++A+ +L ++RG++DV+ E+ + R+ K+ + R +L+
Sbjct: 199 LKGK-LEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASWLELF--RGKTVRQRLL 255
Query: 238 MAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADK 297
M +++ FQQ+TGIN + YSP +F TL L +S L ++ G + VF +++ L D+
Sbjct: 256 MGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL---LVTIIVGVVNFVFTFIAIFLVDR 312
Query: 298 FGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGP 357
FGR+ L L+G M + +++G A LG S+G + +V + L+ + + WGP
Sbjct: 313 FGRRPLLLLGAAGMAICFLVLG---VALLGVAK--SKGAGIVAIVFILLFIAFFALGWGP 367
Query: 358 LAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMT 417
+ W++ SE+FPL +R +I A N+L FL F + +F F GL+++
Sbjct: 368 VPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFI 427
Query: 418 TFMHFFLPETKNVPIEQMDKVW 439
F+ FF+PETK +E++D+++
Sbjct: 428 LFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 2e-83
Identities = 139/411 (33%), Positives = 221/411 (53%), Gaps = 16/411 (3%)
Query: 36 FTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGS---AFNIYMLIFGRL 92
S + G +G+L A ++ GRK S+LI + F+ G+ L G A ++ MLI GR+
Sbjct: 76 VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRV 135
Query: 93 LLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGW 152
LLG+G+G + VP+YLSE+AP RG +QL G+L A G + GW
Sbjct: 136 LLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGW 195
Query: 153 RISLAMAAAPASILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIR 212
RI L + PA +L +G FLPE+P ++ + ++A+K L R+RG + + EL D +
Sbjct: 196 RIPLGLQLIPAGLLFLGLFFLPESPRWLVGK-GRVEEARKSLARLRGTSGEDKELLDELE 254
Query: 213 ASSISKSITHPFKNIA-------QRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRTL 265
I +SI + R+ R +L + +++ +FQQ TGIN + YSP +F
Sbjct: 255 LIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENA 314
Query: 266 KLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQ 325
+ + L+S +V G + F V++ L D+FGR+ L L+G M + ++G + A+
Sbjct: 315 GVSTDHAFLVSIIV-GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASF 373
Query: 326 LGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFL 385
+ + + +V + L+ + + WGP+ W++ SEIFPL +R G SI VA N+L
Sbjct: 374 VTGSS---KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWL 430
Query: 386 FTFLTAQTFLPMLCHFKAG-IFFFFGGLVLIMTTFMHFFLPETKNVPIEQM 435
F+ F ML G +F FFGGL ++ F++FFLPETK +E++
Sbjct: 431 ANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 7e-49
Identities = 123/454 (27%), Positives = 204/454 (44%), Gaps = 73/454 (16%)
Query: 29 DSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGS-------- 80
+ LL +S I I+G + + GR+ S+ I V F SALG +
Sbjct: 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI-SALGSAWPEFGFTS 111
Query: 81 ----------AFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGA 130
F IY R++ G+G+G + P+Y++E+AP RG Q
Sbjct: 112 IGPDNTGYVPEFVIY-----RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII 166
Query: 131 IGVLSANLLNYGTQKIKGG----W----GWRISLAMAAAPASILTIGAIFLPETPNSIIQ 182
G L +NY I W GWR A A PA + + F+PETP ++
Sbjct: 167 FGQLVVYFVNYF---IARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMS 223
Query: 183 RSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQL------ 236
R ++A+ +L+++ G L + I S+ H ++ L
Sbjct: 224 R-GKQEQAEGILRKIMGNTLATQALQE------IKHSLDH-----GRKTGGKLLMFGVGV 271
Query: 237 -VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILA 295
V+ +++ FQQ GIN+V Y+P +F+TL +LL + +V G + F +++++
Sbjct: 272 IVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIV-GVINLTFTVLAIMTV 330
Query: 296 DKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSW 355
DKFGRK L ++G + M + +G+ Q G L+ ++ Y + + SW
Sbjct: 331 DKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-------PGIVALLSMLF--YVAAFAMSW 381
Query: 356 GPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPML-------CHFKAGIFFF 408
GP+ W++ SEIFP IR +I VA ++ + + TF PM+ HF G ++
Sbjct: 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTF-PMMDKNSWLVAHFHNGFSYW 440
Query: 409 FGGLVLIMTT-FMHFFLPETKNVPIEQMDKVWRE 441
G + ++ FM F+PETK +E+M+ +W
Sbjct: 441 IYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 84/412 (20%), Positives = 158/412 (38%), Gaps = 53/412 (12%)
Query: 37 TSSLYITGIL-GSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLG 95
T S + G+L GS + ++ GRK +L+ + L + N + + RLL+G
Sbjct: 132 TQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191
Query: 96 VGI-GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRI 154
+GI G Q+V L E P K R Q+ ++G++ L+ Y WR
Sbjct: 192 MGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRW 244
Query: 155 SLAMAAAPASILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGI----ADVEAELNDL 210
+ P + + + F+PE+P +I + ++A K+LQR+ I E L
Sbjct: 245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLPAEVLSLSL 303
Query: 211 IRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGES 270
+ S SK R + +++ F Y VL LG
Sbjct: 304 EKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF------TTAFSYYGLVLD-LGNLG-- 354
Query: 271 TSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHG 330
++ L ++G + +++++L D+ GR+ + +++
Sbjct: 355 GNIYLDLFISGLVELPAKLITLLLIDRLGRR------YTMAASLLLAGVALLLLLF---- 404
Query: 331 GFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVA---VNFLFT 387
+L + L G ++ + +L +E++P +R+ G + V + +
Sbjct: 405 -VPVDLYFLRTALAVLGKFGITSAFQ-MVYLYTAELYPTVVRNLGVGVCSTMARVGSIIS 462
Query: 388 FLTAQT-----FLPMLCHFKAGIFFFFGGLVLIMTTFMHFFLPETKNVPIEQ 434
FLP +F G + ++ + FLPETK VP+ +
Sbjct: 463 PFLVYLGEKWLFLP------LVLF----GGLALLAGILTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 8e-14
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Query: 28 FDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYML 87
+ S+ + LGSL+A ++ GR+ +L+G + F GS L A ++++L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 88 IFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK 147
+ GR LLG+G G + ++E PPK RG F +G L LL +
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES- 149
Query: 148 GGWGWRISLAMAAAPASILTIGAIFLP 174
GWR + A +L + +FL
Sbjct: 150 --LGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 8e-13
Identities = 79/346 (22%), Positives = 137/346 (39%), Gaps = 37/346 (10%)
Query: 45 ILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQS 104
G+L + +GR+ +L + F + L A N+ L+ R L G+G+G +
Sbjct: 66 AFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN 125
Query: 105 VPLYLSEMAPPKYRGTFNIGFQLCG-AIGVLSANLLNYGTQKIKGGW-----GWRISLAM 158
+ +SE AP ++RGT +G CG IG L GW GWR +
Sbjct: 126 LNALVSEYAPKRFRGTA-VGLMFCGYPIGAAVGGFL--------AGWLIPVFGWRSLFYV 176
Query: 159 AA-APASILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSIS 217
AP +L + FLPE+ + ++ + + + + A+ ++ L +
Sbjct: 177 GGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTK 236
Query: 218 KSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSA 277
+S FK + Q K V+ L+ F V G+ + + P L LG S SL +
Sbjct: 237 RS---VFKALFQGKTARITVLLWLLYFMLLV-GVYFLTNWLPKLMVE--LGFSLSLAATG 290
Query: 278 LVAGGMGTVF-AIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336
G V +I+ LAD+ G +V L+ +++G++ A +G
Sbjct: 291 GALFNFGGVIGSIIFGWLADRLGPRVTALL---------LLLGAVFAVLVGSTLFSPTLL 341
Query: 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAV 382
L + + G L L+ +P IR+ G + +
Sbjct: 342 LLLGAIAGFFVNGGQ----SGLYALMA-LFYPTAIRATGVGWAIGI 382
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 62/349 (17%), Positives = 124/349 (35%), Gaps = 46/349 (13%)
Query: 37 TSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGV 96
++ + L +A ++ GR+ +LIG + F G L A ++++L+ R+L G+
Sbjct: 38 LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97
Query: 97 GIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISL 156
G G + +++ PP+ RG +G LL + +GWR +
Sbjct: 98 GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL---LASLFGWRAAF 154
Query: 157 AMAAAPASILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSI 216
+ A A + + A L P +R ++A L +
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLL--------------- 199
Query: 217 SKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLS 276
V+ +L+ + Y P+ L L + LL
Sbjct: 200 ----------------LRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLL 243
Query: 277 ALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336
L AG +G + ++ L+D+ GR+ L+ + ++++ + + +
Sbjct: 244 GL-AGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLT----------ES 292
Query: 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFL 385
+ +LV + L G + P + S++ P E R + L
Sbjct: 293 SLWLLVALLLLGFGAGLVF-PALNALVSDLAPKEERGTASGLYNTAGSL 340
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 64/303 (21%), Positives = 109/303 (35%), Gaps = 50/303 (16%)
Query: 86 MLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQK 145
+L+ RL+ G +G LYL+E APP RG + Q+ +G+L A L
Sbjct: 98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY 157
Query: 146 IKGG-----WGWRISLAMAAAPASILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGI 200
+ G WGWRI ++A I L ETP + H+K
Sbjct: 158 LLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP-VFEKAQEKHKKK---------- 206
Query: 201 ADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPV 260
P K+R ++ + + T ++ Y P
Sbjct: 207 --------------------RGPIAETL-TKHRKPFLLGLGLVIATTTT-FYLITTYLPT 244
Query: 261 -LFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIG 319
L +TL L +++LL+ L + L+D+ GR+ + ++ + + V +
Sbjct: 245 YLTQTLGLSANSALLVLMLSLILFFITIPLSGA-LSDRIGRRPVLIIFTVLAALLAVPLL 303
Query: 320 SIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSIT 379
+ G L +V + GP+ +P E+FP E+R G S+
Sbjct: 304 MALLDS---------GSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLA 353
Query: 380 VAV 382
+
Sbjct: 354 YNL 356
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 13/192 (6%)
Query: 234 PQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMI 293
+L++ + + FF G + Y P+ + + + L + G G + A++ +
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 294 LADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCY 353
L+D+ GR+ L L+ G + A L L+ +++ + G+ +
Sbjct: 234 LSDRLGRRRLLLLIG----------LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283
Query: 354 SWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLV 413
SE+ P E R + L L +L G F +
Sbjct: 284 PALLTLA---SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL 340
Query: 414 LIMTTFMHFFLP 425
++ + LP
Sbjct: 341 ALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 28 FDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLA-GSALGGSAFNIYM 86
+ S + GILG+L+ ++ LGR+ +L+ G+ A G L A ++ +
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 87 LIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKI 146
L+ LLLG G+GF ++ SE+APP+ RGT + F G++G LL +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL---AGLL 324
Query: 147 KGGWGWRISLAMAAAPASILTIGAIFLP 174
G+ + AA A + + + LP
Sbjct: 325 LDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-05
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 45 ILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQS 104
++ S ++ +T GRK +L+G F+ +A+ + NI +LI R L G G F +
Sbjct: 12 LIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVA 71
Query: 105 VPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPAS 164
++++ PP+ RG A+G L L + GWR A A
Sbjct: 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPL---GGVLAQFLGWRAPFLFLAILAL 128
Query: 165 ILTI-GAIFLPET 176
I A LPET
Sbjct: 129 AAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 109/456 (23%), Positives = 173/456 (37%), Gaps = 87/456 (19%)
Query: 45 ILGSLIASSVTRALGRK----VSILIGGVAFLAGSALGGSAFNIYM--LIFGRLLLGVGI 98
+ G L + LGRK + ++I +A +A GS+ M L F R LGVGI
Sbjct: 70 LAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGI 129
Query: 99 GFGNQSVPLYLSEMAPPKYRGTF------NIGF-QLCGAIGVLSANL-----LNY----- 141
G + SE A K+RG GF L GAI L L
Sbjct: 130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEA 189
Query: 142 ---GTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVR 198
G+ + WRI + A PA + + +PETP + + D K + +
Sbjct: 190 SCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETP----RYTADVAKDVE-----Q 240
Query: 199 GIADVEAELNDLIRASS-----ISKSITHP-------FKNIAQRKYRPQLV------MAI 240
+D+ A L I A S ++ P F + + ++ L+ +
Sbjct: 241 AASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLL 300
Query: 241 LIPFF----QQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAI-VSMILA 295
I F+ Q ++ +G YSP E + L+ GTV V++ L
Sbjct: 301 DIAFYGVNLNQKVILSAIG-YSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLV 359
Query: 296 DKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSW 355
D GRK + L+G + V ++G L HG +L + ++ + + +
Sbjct: 360 DIIGRKPIQLMGFFILTVLFFVLG-FAYNHLSTHG-------FLAIYVLAQFFANF---- 407
Query: 356 GPLA--WLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCH------FKAGIFF 407
GP A ++VP E+FP RS I+ A + FL + H + GI
Sbjct: 408 GPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI-- 465
Query: 408 FFGGLVLIMTTFM------HFFLPETKNVPIEQMDK 437
+ G ++ I FM +PETK +E++
Sbjct: 466 WMGHVLEIFALFMFLGILFTLLIPETKGKSLEELSG 501
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 12/122 (9%)
Query: 46 LGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSV 105
L + A + R G + S+ + + AG + S + +L G LL G GI N +
Sbjct: 62 LFAPAAPRLARRFGEERSLFLALLLIAAGILIR-SLGGLPLLFLGTLLAGAGIAVINVLL 120
Query: 106 PLYLSEMAP---PKYRGTFNIGFQLCGAIG-VLSANLLNYGTQKIKGGWGWRISLAMAAA 161
P + P G ++ A+ L+ L + GWR +L A
Sbjct: 121 PSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSG-------GWRGALGFWAL 173
Query: 162 PA 163
A
Sbjct: 174 LA 175
|
Length = 395 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 58/276 (21%), Positives = 97/276 (35%), Gaps = 57/276 (20%)
Query: 46 LGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG-FGNQS 104
LG+ + + +T L R+ +L F+ + L A + +L+ R L G+ G F + +
Sbjct: 63 LGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIA 122
Query: 105 VPLYLSEMAPPKYR----GTFNIGFQLCGAIGV-LSANLLNYGTQKIKGGWGWRISLAMA 159
L + + PP R G L +GV L L +GWR +
Sbjct: 123 AAL-AARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL--------FGWRATFLAI 173
Query: 160 AAPASILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKS 219
A A + + L+ S IS S
Sbjct: 174 AVLALLALLLLWK-------------------------------------LLPPSEISGS 196
Query: 220 ITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY-SPVLFRTLKLGEST-SLLLSA 277
+ P + + + RP +++ +L F +TG + Y P L S SL+L
Sbjct: 197 LPGPLRTLLRLLRRPGVLLGLLATFL-FMTGHFALYTYIRPFLESVAGFSVSAVSLVL-- 253
Query: 278 LVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLV 313
L G G + ++ LAD+ R+ L + L
Sbjct: 254 LAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALA 289
|
Length = 394 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 38 SSLYITGILGSLIASSVTRALGRKVSILI-----GGVAFLAGSALGGSAFNIYMLIFGRL 92
+Y+ ++G+ + LGRK +LI G AF + G F +F RL
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFF-----LFCRL 263
Query: 93 LLGVGIGFGNQSVPLYLSEMAPPKYRG---TFNIGFQLCGAI---GVLSANLLNYGTQKI 146
L G GIG V Y +E + RG ++ F + G I + A + +YG
Sbjct: 264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ 323
Query: 147 KGG----WGWRISLAMAAAPASILTIGAI-FLPETPNSIIQRSNDHQKAQKMLQRV 197
G WR+ + + A P + IGA+ F+PE+P ++ + H +A +L+ +
Sbjct: 324 MGSAYQFHSWRVFVIVCAFP-CVFAIGALTFMPESPRFFLE-NGKHDEAWMILKLI 377
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 34 TTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLL 93
+ S+ +I+ G L+ ++ GR+++++I V F G+ G A + L RL+
Sbjct: 58 ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLV 117
Query: 94 LGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCG-AIG-VLSANLLNYGTQKIKGGWG 151
+G+G+ S Y+ E P R + GF + G +IG V++A + + + WG
Sbjct: 118 IGMGMAGEYGSSATYVIESWPKHLRNKAS-GFLISGFSIGAVVAAQVYSL----VVPVWG 172
Query: 152 WRISLAMAAAPA 163
WR + P
Sbjct: 173 WRALFFIGILPI 184
|
Length = 496 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 24/131 (18%)
Query: 58 LGRKVSILIGGVA-FLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPK 116
+GRK ILI VA F S A++ L+ RLL GVG+G ++ SE P+
Sbjct: 77 IGRKR-ILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR 135
Query: 117 YRGTFNIGFQLCG---------AIGVLSANLLNYGTQKIKGGWGWR-ISLAMAAAPASIL 166
RGT + CG IGVL+A G WR I P ++
Sbjct: 136 LRGT-AVSLMYCGVPFGGALASVIGVLAA-----------GDAAWRHIFYVGGVGPLLLV 183
Query: 167 TIGAIFLPETP 177
+ +LPE+
Sbjct: 184 PLLMRWLPESR 194
|
Length = 406 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 463 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.94 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.93 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.93 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.92 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.89 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.88 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.87 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.87 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.87 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.86 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.86 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.85 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.84 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.83 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.82 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.81 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.77 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.74 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.73 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.7 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.68 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.66 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.6 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.57 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.52 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.52 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.5 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.48 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.47 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.47 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.46 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.46 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.44 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.44 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.42 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.42 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.42 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.4 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.39 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.39 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.38 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.37 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.36 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.36 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.35 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.34 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.34 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.34 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.34 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.34 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.33 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.33 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.32 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.32 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.31 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.31 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.3 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.3 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.3 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.29 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.29 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.28 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.28 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.27 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.27 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.27 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.27 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.26 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.26 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.26 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.26 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.25 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.25 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.25 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.25 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.25 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.24 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.23 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.23 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.23 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.22 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.22 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.22 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.21 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.21 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.2 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.19 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.18 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.18 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.15 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.14 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.12 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.11 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.11 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.11 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.11 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.1 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.09 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.09 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.09 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.07 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.06 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.05 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.05 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 99.05 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.04 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.04 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.04 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.02 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.02 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.99 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.98 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.98 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.98 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.98 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.95 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.94 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.93 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.92 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.89 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.89 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.87 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.85 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.83 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.81 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.81 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.8 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.79 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.75 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.74 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.74 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.73 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.71 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.7 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.7 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.65 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.65 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.64 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.64 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.64 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.54 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.54 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.53 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.5 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.49 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.46 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.45 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.44 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.37 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.32 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.28 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.27 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.27 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.26 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.24 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.15 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.13 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.11 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.11 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.1 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.1 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.96 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.9 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.82 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.81 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.8 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.6 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.57 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.55 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.49 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.28 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.21 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.18 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.18 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.16 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.96 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.56 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.54 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.53 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.39 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.38 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.92 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.85 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.81 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 95.74 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.75 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 94.61 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.45 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.34 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 93.92 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 93.28 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 93.02 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 92.73 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 92.42 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 92.12 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 91.93 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.06 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 90.08 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 87.84 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 81.86 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=342.19 Aligned_cols=405 Identities=27% Similarity=0.473 Sum_probs=352.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhhcccccccchhhH
Q 012438 31 QLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA---FNIYMLIFGRLLLGVGIGFGNQSVPL 107 (463)
Q Consensus 31 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~ 107 (463)
...+.+.+++.+|.++|+++.++++||+|||..+.++.++..++.++..++ +++..++++|++.|+..|......+.
T Consensus 60 ~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pm 139 (485)
T KOG0569|consen 60 LLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPM 139 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356889999999999999999999999999999999999888888777665 78999999999999999999999999
Q ss_pred HhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCC-cchhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhhCCc
Q 012438 108 YLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKG-GWGWRISLAMAAAPASILTIGAIFLPETPNSIIQRSND 186 (463)
Q Consensus 108 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 186 (463)
++.|..|++.||......+.+..+|.+++..++ +..+.+ ...|++.+.+..+++++..+...++||||+|+..++++
T Consensus 140 yl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~--l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~ 217 (485)
T KOG0569|consen 140 YLTEISPKNLRGALGTLLQIGVVIGILLGQVLG--LPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGD 217 (485)
T ss_pred HHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc--cHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCC
Confidence 999999999999999999999999999998876 444443 34699999999999999999999999999999997777
Q ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHhh---cccccCCchhhhhcc-cchhhHHHHHHHHHHHhhhhhhHHHhhHHHHH
Q 012438 187 HQKAQKMLQRVRGIADVEAELNDLIRASS---ISKSITHPFKNIAQR-KYRPQLVMAILIPFFQQVTGINIVGLYSPVLF 262 (463)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (463)
++||++.++.+++.++.+++.++..++.+ .+++.+.++++++++ ..+++....+.+....++.+.+...+|...++
T Consensus 218 ~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~ 297 (485)
T KOG0569|consen 218 EEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIF 297 (485)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHH
Confidence 99999999999998866555544433322 233356678888875 45566777788888899999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHH
Q 012438 263 RTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILV 342 (463)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (463)
++.|++...+. +.....+...++.++++.++.||+|||++++.+..++.+..+++........... ....+..+.
T Consensus 298 ~~aG~~~~~a~-~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~----~~~~y~~i~ 372 (485)
T KOG0569|consen 298 KTAGFTPEEAQ-YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG----SWLSYLCIA 372 (485)
T ss_pred HHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHH
Confidence 99999999888 8889999999999999999999999999999999999998888877654432111 122345677
Q ss_pred HHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 012438 343 MVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMHF 422 (463)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (463)
+.+.+...++.+.+|+.+.+.+|++|++.|++++++...++++..++....+.++.+..|...++++.+.+++..+.+++
T Consensus 373 ~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~ 452 (485)
T KOG0569|consen 373 AIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYR 452 (485)
T ss_pred HHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHhcC
Q 012438 423 FLPETKNVPIEQMDKVWREH 442 (463)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~ 442 (463)
++||||+|+..|+.+..+++
T Consensus 453 ~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 453 YLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred hCcccCCCCHHHHHHHHHhC
Confidence 99999999999998887765
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=329.42 Aligned_cols=400 Identities=19% Similarity=0.244 Sum_probs=284.1
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhh------HHHHHHHHHHhhcccc
Q 012438 26 CKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFN------IYMLIFGRLLLGVGIG 99 (463)
Q Consensus 26 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~~ 99 (463)
.+.++.+.+++.+.+.++..++++++|+++||+|||+++.++.+++.+++++++++++ ++.++++|+++|++.|
T Consensus 51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence 3556778899999999999999999999999999999999999999999999988865 7899999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhccc--------------------CCcchhHHHHHhh
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKI--------------------KGGWGWRISLAMA 159 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~--------------------~~~~gwr~~f~~~ 159 (463)
...+....+++|++|+++|++++++.+....+|.++++.++..+... ...++||+++.+.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~ 210 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG 210 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999887654321 1124799999999
Q ss_pred HHHHHHHHHHhhcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchh---hH
Q 012438 160 AAPASILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRP---QL 236 (463)
Q Consensus 160 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 236 (463)
++++++..+..+++||||+|+..++++++++++.+.+.++.+..++ .++..+.+++++..+.+++++++....+ +.
T Consensus 211 ~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 289 (502)
T TIGR00887 211 AVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKH 289 (502)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHH
Confidence 9998888888888999999998887755566666665543221111 0110000011111123566666532212 22
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhh
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSL-----------LLSALVAGGMGTVFAIVSMILADKFGRKVLFL 305 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 305 (463)
.+......+.....++....|.|.++++.|.+..... ........++.+++.++.++++||+|||+.+.
T Consensus 290 ~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~ 369 (502)
T TIGR00887 290 LLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQL 369 (502)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Confidence 2222222333333455666778999988887654211 01233445567778899999999999999988
Q ss_pred HhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHH
Q 012438 306 VGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFL 385 (463)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 385 (463)
.+..+..++..++...... ...... ....+++...+..+..+..+.+.+|.+|++.|+++.|+.+.++++
T Consensus 370 ~~~~~~~~~~~~l~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~ 439 (502)
T TIGR00887 370 MGFFILTVLFFVLGFAYNH--------LSTHGF--LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKA 439 (502)
T ss_pred HHHHHHHHHHHHHHHHHHh--------cchhHH--HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhh
Confidence 8877777766655543200 001111 112222222234445567788889999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcc----------c-chhHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 012438 386 FTFLTAQTFLPMLCHF----------K-AGIFFFFGGLVLIMTTFMHFFLPETKNVPIEQMDK 437 (463)
Q Consensus 386 g~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (463)
+++++|.+.+.+.+.. + ...++++++++++..+ .++++||+++++.+|+++
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 440 GAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL-FTLLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH-HheEeccCCCCCHHhhhC
Confidence 9999999999998743 2 2345555555554444 456779999988776553
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=318.86 Aligned_cols=407 Identities=26% Similarity=0.480 Sum_probs=293.7
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh------------hhHHHHHHH
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA------------FNIYMLIFG 90 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------------~~~~~l~~~ 90 (463)
..+++.++.+.+++.+++.++..++++++|+++||+|||++++++.+++.++.+.++++ ++++.++++
T Consensus 47 ~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 126 (479)
T PRK10077 47 NLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIY 126 (479)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHH
Confidence 44558899999999999999999999999999999999999999999999998888763 235678899
Q ss_pred HHHhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcc-----cCCcchhHHHHHhhHHHHHH
Q 012438 91 RLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQK-----IKGGWGWRISLAMAAAPASI 165 (463)
Q Consensus 91 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~-----~~~~~gwr~~f~~~~~~~~~ 165 (463)
|+++|++.|...+...++++|++|+++|++++++.+.+..+|.++++.++..+.. ..+..|||+.|++.+++.++
T Consensus 127 R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~ 206 (479)
T PRK10077 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALL 206 (479)
T ss_pred HHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887765532 12346899999999888888
Q ss_pred HHHHhhcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHH
Q 012438 166 LTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFF 245 (463)
Q Consensus 166 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (463)
..+..+++||+|+++..+++ .+++++..++..+.++.....++..+....++.. .+..+. ..............+
T Consensus 207 ~~~~~~~l~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~ 281 (479)
T PRK10077 207 FLMLLYFVPETPRYLMSRGK-QEQAEGILRKIMGNTLATQALQEIKHSLDHGRKT---GGKLLM-FGVGVIVIGVMLSVF 281 (479)
T ss_pred HHHHHHcCCCCcHHHHHcCC-HHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhh---hhhhcc-hhHHHHHHHHHHHHH
Confidence 77777779999998766655 5666665555544333222222211111100000 011110 011111112222333
Q ss_pred HhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhh
Q 012438 246 QQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQ 325 (463)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (463)
....+++...++.|.+.++.+.+..... ......++..+++.++.++++||+|||+.+..+..+..++.+.+.....
T Consensus 282 ~~~~~~~~~~~~~p~i~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~-- 358 (479)
T PRK10077 282 QQFVGINVVLYYAPEIFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY-- 358 (479)
T ss_pred HHHhChhHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh--
Confidence 3344455666788998888888766555 6667778889999999999999999999999998888887776654321
Q ss_pred hCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhh------h
Q 012438 326 LGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPML------C 399 (463)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~------~ 399 (463)
...........+++++.++...+.|..+.+++|.+|++.|++++|+.+...+++.++++.+++.+. +
T Consensus 359 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~ 431 (479)
T PRK10077 359 -------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVA 431 (479)
T ss_pred -------cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhh
Confidence 001122333344455555555556777888899999999999999999999999999987776554 3
Q ss_pred cccc-hhHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCcc
Q 012438 400 HFKA-GIFFFFGGLVLIMTTFMHFFLPETKNVPIEQMDKVWREHWF 444 (463)
Q Consensus 400 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (463)
..++ ..+.++++++++..++.+++.||+|+++.+|.++..+++.+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 477 (479)
T PRK10077 432 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETK 477 (479)
T ss_pred hccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhccc
Confidence 4443 34555555656666666677899999988888777655443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=325.89 Aligned_cols=394 Identities=17% Similarity=0.188 Sum_probs=293.7
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
.+.++++++..+.+++.++++++.+++++++|+++||+|||++++++.+++++++++++++++++.++++|++.|++.|+
T Consensus 192 ~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~ 271 (742)
T TIGR01299 192 SAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGG 271 (742)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC----------CcchhHHHHHhhHHHHHHHHHHh
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK----------GGWGWRISLAMAAAPASILTIGA 170 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----------~~~gwr~~f~~~~~~~~~~~~~~ 170 (463)
..+...+++.|++|+++|++.++++..+..+|.++++.++..+.... ...+||+.+++.++++++.++..
T Consensus 272 ~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 272 AIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765543211 12479999999999888887777
Q ss_pred hcCCCChHHHHhhCCcHHHHHHHHHHHhCchhH-----HHH--HHHHHHHhhc------ccccC----------------
Q 012438 171 IFLPETPNSIIQRSNDHQKAQKMLQRVRGIADV-----EAE--LNDLIRASSI------SKSIT---------------- 221 (463)
Q Consensus 171 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~------~~~~~---------------- 221 (463)
+++||+|+|+..+++ .+++.+.+++++..+.. ... ..+.+...+. +++..
T Consensus 352 ~~lPESPrwL~~~gr-~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (742)
T TIGR01299 352 TFMPESPRFFLENGK-HDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGG 430 (742)
T ss_pred HHcCCCHHHHHHCCC-HHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhh
Confidence 889999999988877 88888888888765421 110 0011000000 00000
Q ss_pred --CchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHHc----------------------------------
Q 012438 222 --HPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRTL---------------------------------- 265 (463)
Q Consensus 222 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 265 (463)
.+++++++...+++.+++. +..++...+++.+..|+|.++++.
T Consensus 431 ~~~~~~~lf~~~~~~~tl~l~-~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (742)
T TIGR01299 431 IWGNFLRCFNPEVREITIKLM-GVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGG 509 (742)
T ss_pred HHHHHHHHcCccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhcccc
Confidence 1344555555555555544 445555668899999999876442
Q ss_pred --------CC-----C----------------C-----------------------------------------------
Q 012438 266 --------KL-----G----------------E----------------------------------------------- 269 (463)
Q Consensus 266 --------~~-----~----------------~----------------------------------------------- 269 (463)
++ . .
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 589 (742)
T TIGR01299 510 EYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDG 589 (742)
T ss_pred ccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCc
Confidence 00 0 0
Q ss_pred c----hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHH
Q 012438 270 S----TSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVC 345 (463)
Q Consensus 270 ~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (463)
. ........+..++.+++.+++++++||+|||+++..+.++.+++.+++.+. ......++..+
T Consensus 590 ~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-------------~s~~~ll~~~~ 656 (742)
T TIGR01299 590 DDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG-------------NSESAMIALLC 656 (742)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-------------ccHHHHHHHHH
Confidence 0 011244566778899999999999999999999998888888887766653 11222333333
Q ss_pred HHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcC
Q 012438 346 LYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFFLP 425 (463)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (463)
+++++.... .+....+++|++|++.|++++|+.+....+|++++|.+.+.+.+.....++++.++ +.+++.++..++|
T Consensus 657 l~g~~~~~~-~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~-~lll~~ll~~~LP 734 (742)
T TIGR01299 657 LFGGLSIAA-WNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASA-ALACGGLLALKLP 734 (742)
T ss_pred HHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHhCC
Confidence 333333332 35566778999999999999999999999999999999998877543334444444 4444555566779
Q ss_pred CCCCCC
Q 012438 426 ETKNVP 431 (463)
Q Consensus 426 ~~~~~~ 431 (463)
|++++.
T Consensus 735 ET~~~~ 740 (742)
T TIGR01299 735 DTRGQV 740 (742)
T ss_pred CCcccc
Confidence 988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=314.60 Aligned_cols=408 Identities=36% Similarity=0.633 Sum_probs=344.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHHhh
Q 012438 31 QLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLS 110 (463)
Q Consensus 31 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 110 (463)
.+.+++.+++.++..+++++.|+++|++|||+.++++.+++.++++++++++|+++++++|+++|+|.|+.....+.+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhhCCcHHHH
Q 012438 111 EMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSIIQRSNDHQKA 190 (463)
Q Consensus 111 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 190 (463)
|..|++.||...+..+....+|..++..++....+. . ++||..+.+..+++++..+..+++||+|+|+.++++ .+++
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~-~~~a 245 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGR-LEEA 245 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCC-hHHH
Confidence 999999999999999999999999998887776654 2 589999999999999988887779999999999777 8889
Q ss_pred HHHHHHHhC--chhHHHHHHHHHHHhhc---ccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHHc
Q 012438 191 QKMLQRVRG--IADVEAELNDLIRASSI---SKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRTL 265 (463)
Q Consensus 191 ~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (463)
++.++++++ ..+.+.+..+....... ..+.+..+++++++..+++..+.+.+..+++..+++...+|.+.+++..
T Consensus 246 ~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~ 325 (513)
T KOG0254|consen 246 KRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA 325 (513)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc
Confidence 999999988 34444444443311111 1112224666666667778888899999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHH
Q 012438 266 KLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVC 345 (463)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (463)
+..... . ......++..+++.+++.++.||+|||+.++.+...+.++.+++............ ......+..+...+
T Consensus 326 g~~~~~-~-~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 402 (513)
T KOG0254|consen 326 GLKSDT-F-LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN-SSKGAGWLAIVFLC 402 (513)
T ss_pred CCCCch-H-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-cccchhHHHHHHHH
Confidence 988665 3 66777888889999999999999999999999999999999888776544322110 12345677788888
Q ss_pred HHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc-chhHHHHHHHHHHHHH-HHHHh
Q 012438 346 LYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIMTT-FMHFF 423 (463)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 423 (463)
++...+..++.|+.|.+.+|.+|.+.|+.+.++....+++.+.+....+....+..+ ...+..+.+++.+... +.++.
T Consensus 403 ~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~ 482 (513)
T KOG0254|consen 403 LFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFF 482 (513)
T ss_pred HHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEE
Confidence 888899999999999999999999999999999999999999988888777777766 6677777777777777 78889
Q ss_pred cCCCCCCCHHHHHHHHhcCcc
Q 012438 424 LPETKNVPIEQMDKVWREHWF 444 (463)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~ 444 (463)
+||+|+++.+|+++..++...
T Consensus 483 ~pETkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 483 VPETKGLTLEEINELFEEGIK 503 (513)
T ss_pred cccCCCCcHHHHHHHHHcCCc
Confidence 999999999999987766543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=304.31 Aligned_cols=358 Identities=17% Similarity=0.181 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHH--------HHHHHHHhhcccccccchhhHH
Q 012438 37 TSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYM--------LIFGRLLLGVGIGFGNQSVPLY 108 (463)
Q Consensus 37 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~ 108 (463)
.++.++++.+++++.|+++||+|||+++.++.++++++++++++++|++. +++.|+++|++.|+.++...++
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 57888999999999999999999999999999999999999999999875 8999999999999999999999
Q ss_pred hhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhccc-----CCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhh
Q 012438 109 LSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKI-----KGGWGWRISLAMAAAPASILTIGAIFLPETPNSIIQR 183 (463)
Q Consensus 109 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~-----~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 183 (463)
++|++|+++|+++.++...+..+|..+++.+...+... ...+|||+.|++.++++++..++..++||+|++...+
T Consensus 143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~ 222 (490)
T PRK10642 143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHV 222 (490)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Confidence 99999999999999999999888988888665443321 1246999999998877776555556699999765332
Q ss_pred CCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHH
Q 012438 184 SNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFR 263 (463)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (463)
++.+++.+ +...++.+.++++++++ .++...... ...+.....++.+..|.|.+++
T Consensus 223 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~ 278 (490)
T PRK10642 223 DKLEQGDR----------------------EGLQDGPKVSFKEIATK-HWRSLLTCI-GLVIATNVTYYMLLTYMPSYLS 278 (490)
T ss_pred Hhhhhhcc----------------------ccccccccCCHHHHHHH-hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 11000000 00001122345555543 222222222 2223333456677788999885
Q ss_pred H-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHH
Q 012438 264 T-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILV 342 (463)
Q Consensus 264 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (463)
+ .+.+..... .......++.+++.++.|+++||+|||+.+..+.+...+....+.... ...+......
T Consensus 279 ~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 347 (490)
T PRK10642 279 HNLHYSEDHGV-LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI----------NSNVIGLIFA 347 (490)
T ss_pred HhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHH
Confidence 4 577665554 666677788889999999999999999988776654443332222111 0011222222
Q ss_pred HHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc-chhHHHHHHHHHHHHHHHH
Q 012438 343 MVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIMTTFMH 421 (463)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 421 (463)
...+.+.+.+... .....+..|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+ +.....+..+..+++++..
T Consensus 348 ~~~~~g~~~~~~~-g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (490)
T PRK10642 348 GLLMLAVILNCFT-GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG 426 (490)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 2233322222222 2333455789999999999998777788888999999999887654 3332223333444444455
Q ss_pred HhcCCCCCC
Q 012438 422 FFLPETKNV 430 (463)
Q Consensus 422 ~~~~~~~~~ 430 (463)
+++||++++
T Consensus 427 ~~~pes~~~ 435 (490)
T PRK10642 427 VTMKETANR 435 (490)
T ss_pred HHhccccCC
Confidence 567887654
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=306.93 Aligned_cols=386 Identities=19% Similarity=0.291 Sum_probs=276.0
Q ss_pred CCccCCccccC---chhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Q 012438 19 DTKVGNYCKFD---SQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLG 95 (463)
Q Consensus 19 ~~~~~~~~~~s---~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 95 (463)
.+.+.+|+|++ +.+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++++|++.+++.|++.|
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G 191 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45688999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCC
Q 012438 96 VGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPE 175 (463)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 175 (463)
++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+. +||+.|++.+++.++..+..+++||
T Consensus 192 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred hhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999886654 3999999999998888777778999
Q ss_pred ChHHHHhhCCcHHHHHHHHHHHhCchhHH--HHHHHHH-HHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhh
Q 012438 176 TPNSIIQRSNDHQKAQKMLQRVRGIADVE--AELNDLI-RASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGIN 252 (463)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (463)
+|+|+..+++ .+++++.+++..+.+... .+..+.. +++..+++.+.+++++++++..+...+......+.....++
T Consensus 266 sp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (505)
T TIGR00898 266 SPRWLISQGR-IEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYY 344 (505)
T ss_pred ChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988777 666666665554332111 1111111 11111111234566666554443333333222222211222
Q ss_pred HHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCC
Q 012438 253 IVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGF 332 (463)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (463)
..+.+....+.+. . ......++..+++.++.+++.||+|||+.+.++.++.+++.+++.+.
T Consensus 345 ----~~~~~~~~~~~~~---~-~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~----------- 405 (505)
T TIGR00898 345 ----GLVLDLGNLGGNI---Y-LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV----------- 405 (505)
T ss_pred ----HHhccccccCCCh---H-HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc-----------
Confidence 1222233333332 2 34456677888999999999999999999988888777776655543
Q ss_pred cchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHH
Q 012438 333 SEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGL 412 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (463)
+....+.......+...+.... .+..+.+.+|.+|++.|++++|+.+....+|++++|.+.+ +.+......+.+++++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~ 483 (505)
T TIGR00898 406 PVDLYFLRTALAVLGKFGITSA-FQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGL 483 (505)
T ss_pred CCCchHHHHHHHHHHHHHHHHH-HHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHH
Confidence 1111122222222222222222 2455677789999999999999999999999999999988 4443334445555444
Q ss_pred HHHHHHHHHHhcCCCCCCCHH
Q 012438 413 VLIMTTFMHFFLPETKNVPIE 433 (463)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ 433 (463)
.++. .+..+++||+++++++
T Consensus 484 ~~~~-~~~~~~lpet~~~~l~ 503 (505)
T TIGR00898 484 ALLA-GILTLFLPETKGVPLP 503 (505)
T ss_pred HHHH-HHHHHcCcCCCCCCCC
Confidence 4444 4445678998887654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=295.25 Aligned_cols=397 Identities=34% Similarity=0.641 Sum_probs=285.0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhhcccccccch
Q 012438 28 FDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA---FNIYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 28 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~ 104 (463)
.+..+.+++.+.+.++..++++++|+++||+|||++++.+.+++.++.+++.+. .+++.+++.|+++|++.+...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 147 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASAL 147 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhH
Confidence 558999999999999999999999999999999999999999999999998554 45568999999999999999999
Q ss_pred hhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhh---hhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHH
Q 012438 105 VPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLN---YGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSII 181 (463)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~---~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~ 181 (463)
...++.|++|+++|++++++.+.+..+|..+++.++ .... +..+||+.|++.++..++..+..+++||+|++..
T Consensus 148 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~ 224 (481)
T TIGR00879 148 VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN---NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLV 224 (481)
T ss_pred HHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC---CCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 999999999999999999999999999999999997 3322 2358999999977777777666777999998766
Q ss_pred hhCCcHHHHHHHHHHHhCchhHHHHHHH----HHH-HhhcccccCCchhhhhccc--chhhHHHHHHHHHHHhhhhhhHH
Q 012438 182 QRSNDHQKAQKMLQRVRGIADVEAELND----LIR-ASSISKSITHPFKNIAQRK--YRPQLVMAILIPFFQQVTGINIV 254 (463)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 254 (463)
.+++ .++.++..++..+.++.+....+ ... ...+.+..+..+++.++.. ..++.++...+..+.........
T Consensus 225 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (481)
T TIGR00879 225 GKGR-VEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAI 303 (481)
T ss_pred HcCC-hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeeh
Confidence 5544 34444444433322211111100 000 0001111112233333322 23445555555555555556667
Q ss_pred HhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcc
Q 012438 255 GLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSE 334 (463)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (463)
..+.|.+.++.+.+..... .......++.+++.++.++++||++||+.+..+..+..++.+.+.......... ...
T Consensus 304 ~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 379 (481)
T TIGR00879 304 MYYSPTIFENAGVSTDHAF-LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG---SSK 379 (481)
T ss_pred HHHHHHHHHHcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC---ccc
Confidence 7888999999998886555 778888889999999999999999999998888777776666655321110000 000
Q ss_pred hhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchh-HHHHHHHH
Q 012438 335 GYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGI-FFFFGGLV 413 (463)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 413 (463)
...+..+....++..+++.+..+....+.+|.+|++.|+++.|+.+...+++++++|.+.+.+.++.++.. +++.++++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 459 (481)
T TIGR00879 380 SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLN 459 (481)
T ss_pred chhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHH
Confidence 11333344444555555556667777887899999999999999999999999999999999998877544 44445555
Q ss_pred HHHHHHHHHhcCCCCCCCH
Q 012438 414 LIMTTFMHFFLPETKNVPI 432 (463)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~ 432 (463)
++.+++.+++.||+++++.
T Consensus 460 ~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 460 VLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHHHheecccCCCCCh
Confidence 5555555566777766543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=346.40 Aligned_cols=402 Identities=33% Similarity=0.631 Sum_probs=322.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh---hHHHHHHHHHHhhcccccccchh
Q 012438 29 DSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF---NIYMLIFGRLLLGVGIGFGNQSV 105 (463)
Q Consensus 29 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~ 105 (463)
+..+.+++.+..++|..+|+++.|+++||+|||+.++.+.++..+++++.++++ |++.+.++|+++|++.|+..+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456789999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhhCC
Q 012438 106 PLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSIIQRSN 185 (463)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 185 (463)
..++.|..|+++|++..++.+.+..+|.+++..++.......+.++||+.+.+.++++++..+...++||||+|+..+++
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~ 203 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR 203 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc
Confidence 99999999999999999999999999999999888766544444679999999999998888888889999999988887
Q ss_pred cHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccc-hhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHH
Q 012438 186 DHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKY-RPQLVMAILIPFFQQVTGINIVGLYSPVLFRT 264 (463)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (463)
.+|+++.+++.++.+..+++.++..++.++.++.+.+++++++.+. +++....+.+..+....+.+....|.+.+.++
T Consensus 204 -~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~ 282 (451)
T PF00083_consen 204 -DEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN 282 (451)
T ss_pred -ccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 6688888888776654444444444433333333356677776543 45556656666666666667777888888888
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHH
Q 012438 265 LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMV 344 (463)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
.+.+.. . .......+..+++.+++.++.||+|||+.+..+...+.++.+.+...... ... .+.......+...
T Consensus 283 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~i~~~ 355 (451)
T PF00083_consen 283 AGISNS--F-LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL--GVS--SSSWWSILSIVFL 355 (451)
T ss_pred cccccc--c-cccccccccccccccccccccccccccccccccccccccccccccccccc--ccc--cccccccccceee
Confidence 877766 2 34455566777888888899999999999999888888777766510000 000 0001133344445
Q ss_pred HHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc-chhHHHHHHHHHHHHHHHHHh
Q 012438 345 CLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIMTTFMHFF 423 (463)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 423 (463)
.++...+..++.+..+.+.+|++|++.|+++.++....+++++++.+.+...+.+..+ ...+.++++++.+..++.+++
T Consensus 356 ~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~ 435 (451)
T PF00083_consen 356 ALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFF 435 (451)
T ss_pred eeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEE
Confidence 5555566667788888998999999999999999999999999999999988888877 777888888888888888899
Q ss_pred cCCCCCCCHHHHHHH
Q 012438 424 LPETKNVPIEQMDKV 438 (463)
Q Consensus 424 ~~~~~~~~~~~~~~~ 438 (463)
+|||++++.+|++++
T Consensus 436 lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 436 LPETKGKTLEEIQEM 450 (451)
T ss_pred EeeCCCCCHHHHHhh
Confidence 999999999998875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=272.27 Aligned_cols=371 Identities=13% Similarity=0.096 Sum_probs=276.3
Q ss_pred cCCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcc
Q 012438 18 EDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 97 (463)
Q Consensus 18 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 97 (463)
..|.+.+|.++|.+|.|++.|.++++|.++-++.|.++||.++|..+..++++.++.+++++++++.+.+.+.-+++|..
T Consensus 51 a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~f 130 (448)
T COG2271 51 AMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWF 130 (448)
T ss_pred ccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 35667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhh--hhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CC
Q 012438 98 IGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLN--YGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LP 174 (463)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~--~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~ 174 (463)
+|.-+|++...++.|++++|||+..++++++.++|..+.+++. +.+.. +.+||..|++.++++++..+..++ .+
T Consensus 131 Qg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~---~~~w~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 131 QGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF---HGGWRAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred hcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999887 44433 347999999999999988777766 88
Q ss_pred CChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHH-hhcccccCCchhh-hhcccchhhHHHHHHHHHHHhhhhhh
Q 012438 175 ETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRA-SSISKSITHPFKN-IAQRKYRPQLVMAILIPFFQQVTGIN 252 (463)
Q Consensus 175 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (463)
|+|+..--.+ .|| .++ |..+. +++++....+.++ +.+.-.+++.+|.+.+..+.....-+
T Consensus 208 d~Pqs~GLP~--ie~-------~~~---------d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~ 269 (448)
T COG2271 208 DRPQSEGLPP--IEE-------YRG---------DPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRY 269 (448)
T ss_pred CCccccCCCC--HHH-------hhc---------CchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 8884321110 111 000 00000 1111111123333 33455667788888888888888889
Q ss_pred HHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc--CCchhhhHhhHHHHHHHHHHHHHHHhhhCCC
Q 012438 253 IVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKF--GRKVLFLVGGIQMLVSQVMIGSIMAAQLGDH 329 (463)
Q Consensus 253 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (463)
.+..|.|.|+.+ .+++...+. ...+.+-.++++|++++|+++||+ |||....+.+.+.....+......
T Consensus 270 gi~dW~p~YL~e~k~~s~~~a~-~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~------- 341 (448)
T COG2271 270 GINDWGPLYLSEVKGFSLVKAN-WAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA------- 341 (448)
T ss_pred HHhhhHHHHHHHhcCCCHHHHH-HHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-------
Confidence 999999999866 566666666 888899999999999999999995 677665544444433333333220
Q ss_pred CCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHH-HHHHHHhhhhhhhhcccchhHHH
Q 012438 330 GGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFL-FTFLTAQTFLPMLCHFKAGIFFF 408 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 408 (463)
++.+.++..+++...++ +..+..-+.-..+.|+.|++..|++.|+...++++ |...+....+.+.|.++|...++
T Consensus 342 ---~~~~~~l~~~~l~~iGf-~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi 417 (448)
T COG2271 342 ---PNGSYLLDAILLFIIGF-LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFI 417 (448)
T ss_pred ---CCccHHHHHHHHHHHHH-HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHH
Confidence 11222333333333222 22232234445557999999999999999999999 99999999999999988766555
Q ss_pred HHHHHHHHHHHHH
Q 012438 409 FGGLVLIMTTFMH 421 (463)
Q Consensus 409 ~~~~~~~~~~~~~ 421 (463)
...++.+++.+++
T Consensus 418 ~~~~~a~l~~lll 430 (448)
T COG2271 418 VLSIAALLAILLL 430 (448)
T ss_pred HHHHHHHHHHHHH
Confidence 5444444444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=270.30 Aligned_cols=351 Identities=17% Similarity=0.155 Sum_probs=272.1
Q ss_pred cCCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcc
Q 012438 18 EDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 97 (463)
Q Consensus 18 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 97 (463)
--|++.+|+|+|..+.|++.|.|.+++.+++++...+.||+.||++++..+.++.++++++++++||+.++++|++.|+.
T Consensus 35 LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a 114 (394)
T COG2814 35 LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLA 114 (394)
T ss_pred chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCC
Q 012438 98 IGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPET 176 (463)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~ 176 (463)
.|.+++...++..+..|+++|++++++...+..++.++|.++|.++.+. +|||+.|++.+..+++..+..+. +|
T Consensus 115 ~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~---~GWR~~F~~ia~l~ll~~~~~~~~lP-- 189 (394)
T COG2814 115 HGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL---FGWRATFLAIAVLALLALLLLWKLLP-- 189 (394)
T ss_pred HHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 9999999999999999999999999999999999999999999998877 57999999999999988777665 88
Q ss_pred hHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHh
Q 012438 177 PNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGL 256 (463)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
|+... ++.+.+.++.++..++++....+....+.. .+.+....
T Consensus 190 ~~~~~------------------------------------~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~-~g~F~~ft 232 (394)
T COG2814 190 PSEIS------------------------------------GSLPGPLRTLLRLLRRPGVLLGLLATFLFM-TGHFALYT 232 (394)
T ss_pred CccCC------------------------------------CCCCcchhHHHHHhcCchHHHHHHHHHHHH-cchhhhHH
Confidence 21000 011122233333333344444444444444 44444455
Q ss_pred hHHHH-HHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcch
Q 012438 257 YSPVL-FRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEG 335 (463)
Q Consensus 257 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (463)
|...+ .+..|++..... +....++++.++|+.++|++.|| +.|+.+.....+..+..+.+.+.. +
T Consensus 233 Yi~P~L~~v~g~s~~~vs-~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~------------~ 298 (394)
T COG2814 233 YIRPFLESVAGFSVSAVS-LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG------------A 298 (394)
T ss_pred hHHHHHHHccCCCHhHHH-HHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc------------c
Confidence 55444 455677776666 88999999999999999999999 888888888777777777766541 3
Q ss_pred hHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHH
Q 012438 336 YAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLI 415 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (463)
+.+.......+.+........ ......++. -++.+..+.+++....++|..+|..++|.+.|+.++......+++..+
T Consensus 299 ~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~~-~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~ 376 (394)
T COG2814 299 SPALALALLFLWGFAFSPALQ-GLQTRLARL-APDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLL 376 (394)
T ss_pred hHHHHHHHHHHHHHHhhhhhh-HHHHHhccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 344444444444433332221 122222343 358899999999999999999999999999999888777777777777
Q ss_pred HHHHHHHhcCC
Q 012438 416 MTTFMHFFLPE 426 (463)
Q Consensus 416 ~~~~~~~~~~~ 426 (463)
.+..+.+...+
T Consensus 377 ~a~~~~~~~~~ 387 (394)
T COG2814 377 LALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHh
Confidence 66666555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=279.68 Aligned_cols=364 Identities=13% Similarity=0.124 Sum_probs=250.6
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+.+++|+|++..+.|++.+.+++++.+++++.|+++||+|||+++..+.++++++++++++++|++.+++.|+++|++.+
T Consensus 32 ~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 111 (412)
T TIGR02332 32 LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEA 111 (412)
T ss_pred HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhccc---CCcchhHHHHHhhHHHHHHHHHHh-hcCCC
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKI---KGGWGWRISLAMAAAPASILTIGA-IFLPE 175 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e 175 (463)
...+....++.|++|+++|++++++++.+.++|.++++.+++.+... .+..|||+.|++.++++++..+.. +++||
T Consensus 112 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~ 191 (412)
T TIGR02332 112 GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD 191 (412)
T ss_pred hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999998766532 233589999999888877665544 45889
Q ss_pred ChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHH
Q 012438 176 TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVG 255 (463)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (463)
+|+... .-++++.+...+..+.... + .+ +.+...++.+...++.++.... +.++...+.+++.....+.+.
T Consensus 192 ~p~~~~--~l~~~~~~~~~~~~~~~~~-~--~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 262 (412)
T TIGR02332 192 SPDKAK--WLDEEDKKALKEMIDNDQL-T--LE---QPEGAFAHAAMPQRSMLREIFT-PAIMLYTLAYFCLTNTLSAIN 262 (412)
T ss_pred CcccCC--CCCHHHHHHHHHHHHhccc-c--cc---ccccccccccccHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHH
Confidence 884210 0001111111111100000 0 00 0000000001111111221122 234445555555556677788
Q ss_pred hhHHHHHHHc--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhh-hHhhHHHHHHHHHHHHHHHhhhCCCCCC
Q 012438 256 LYSPVLFRTL--KLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLF-LVGGIQMLVSQVMIGSIMAAQLGDHGGF 332 (463)
Q Consensus 256 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (463)
.|.|.++++. +.+..... .......++.+++.++.|+++||+++|+.. ........++. .+...
T Consensus 263 ~~~p~~l~~~~~~~s~~~~~-~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~----------- 329 (412)
T TIGR02332 263 IWTPQILQSFNQGSSNIMIG-LLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA----------- 329 (412)
T ss_pred HHHHHHHHhcCCCCcHHHhH-HHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh-----------
Confidence 9999999875 34544445 778888999999999999999999977753 33322322222 11111
Q ss_pred cchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc-chhHH
Q 012438 333 SEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK-AGIFF 407 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~ 407 (463)
. ...........+...+... ..+..+....|.+|++.|+++.|+.+...++|++++|.+.+.+.|..+ +...+
T Consensus 330 ~-~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~ 403 (412)
T TIGR02332 330 T-DHNLIQLLGIIMASMGSFS-AMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGL 403 (412)
T ss_pred c-CCHHHHHHHHHHHHHHhhh-hhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhH
Confidence 0 1111111112222222211 123344555678999999999999999999999999999999999876 44433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=286.75 Aligned_cols=375 Identities=10% Similarity=-0.043 Sum_probs=252.5
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhh-----hhhHHHHHHHHHH
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGS-----AFNIYMLIFGRLL 93 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l 93 (463)
.+.+.+|+|++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+..++ +++++.+++.|++
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 131 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWAL 131 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999998888888777766554 6899999999999
Q ss_pred hhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-
Q 012438 94 LGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF- 172 (463)
Q Consensus 94 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~- 172 (463)
+|++.+...+....+++||+|+++|+++++++..+.++|.++++.++..+.......+||..|.+.++++++..+..++
T Consensus 132 ~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 132 SGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred HHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988754433211126999998888887776655544
Q ss_pred CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhh-cccchhhHHHHHHHHHHHhhhhh
Q 012438 173 LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIA-QRKYRPQLVMAILIPFFQQVTGI 251 (463)
Q Consensus 173 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 251 (463)
.+++|+..... + .++ . ..+....+ +. ..++.+.+.++.+ +...+++.++...+..++.....
T Consensus 212 ~~~~p~~~~~~-~-~~~---~---~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 274 (467)
T PRK09556 212 GSDSPEELGWG-K-AEE---I---FGEPISEE-------DK--ETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVR 274 (467)
T ss_pred CCCChhhcCCC-C-hhh---c---ccCccchh-------hh--ccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 67766432111 0 111 0 00000000 00 0000011111211 11223344555555555555556
Q ss_pred hHHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCC
Q 012438 252 NIVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHG 330 (463)
Q Consensus 252 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (463)
.....|.|.|+++ .|.+..+.. .......++.+++.++.|+++||++||+..........++...+....
T Consensus 275 ~~~~~~~p~yl~~~~g~s~~~a~-~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~-------- 345 (467)
T PRK09556 275 IGIDNWSPVYAFQELGFSKEDAI-NTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH-------- 345 (467)
T ss_pred HHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh--------
Confidence 6678899988854 778877776 777778888999999999999999998876654443333222211110
Q ss_pred CCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHH-HHHHHHhhhhhhhh----------
Q 012438 331 GFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFL-FTFLTAQTFLPMLC---------- 399 (463)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~~---------- 399 (463)
..+.+...+..++.+... .+..........|.+|++.+|++.|+.+..+++ |+.++|.+.|.+.|
T Consensus 346 ---~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~ 421 (467)
T PRK09556 346 ---ATSEYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFG 421 (467)
T ss_pred ---cCcHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccc
Confidence 011222222333333221 111112223446999999999999999999997 77999999999999
Q ss_pred --cccchhHHHHHHHHHHHHHHHHHh
Q 012438 400 --HFKAGIFFFFGGLVLIMTTFMHFF 423 (463)
Q Consensus 400 --~~~~~~~~~~~~~~~~~~~~~~~~ 423 (463)
..++...+.+..++.+++.+....
T Consensus 422 ~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 422 YTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHH
Confidence 445555544444444444444443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=274.47 Aligned_cols=342 Identities=19% Similarity=0.203 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHH--------HHHHHHHHhhcccccccchh
Q 012438 34 TTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIY--------MLIFGRLLLGVGIGFGNQSV 105 (463)
Q Consensus 34 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~ 105 (463)
+.+.+..+++..++++++|+++||+|||+++..+.++++++++++++++++. .+++.|+++|++.|+.++..
T Consensus 66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~ 145 (432)
T PRK10406 66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTS 145 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhH
Confidence 3444455566669999999999999999999999999999999999998874 58999999999999999999
Q ss_pred hHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC-----CcchhHHHHHhhHHHHHHHHHHhhcCCCChHHH
Q 012438 106 PLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK-----GGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180 (463)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~ 180 (463)
.++++|++|+++|+++.++.+.+...|.++++.+...+.... ..+|||++|++.++++++.......+||+|++.
T Consensus 146 ~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~ 225 (432)
T PRK10406 146 ATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE 225 (432)
T ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 999999999999999999999998899888887765544321 136899999998888877665555578876421
Q ss_pred HhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHH
Q 012438 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPV 260 (463)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
.++. +.+.+++++++++ +.+.......+.....++.+..|.|.
T Consensus 226 ~~~~----------------------------------~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~ 268 (432)
T PRK10406 226 TRAL----------------------------------KEAGSLKGLWRNR---RAFIMVLGFTAAGSLCFYTFTTYMQK 268 (432)
T ss_pred Hhhh----------------------------------cccccHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 0012344444322 22222222222223455667788898
Q ss_pred HHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHH
Q 012438 261 LFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYL 339 (463)
Q Consensus 261 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (463)
++++ .+.+..+.. .......+...++..+.|+++||++||+.+.....+..+....+.... . .......
T Consensus 269 ~l~~~~g~s~~~~~-~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~ 338 (432)
T PRK10406 269 YLVNTAGMHANVAS-GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL--Q-------NVSSPYA 338 (432)
T ss_pred HHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--H-------cCCcHHH
Confidence 8754 677765655 566666677788888999999999999887665554333322221111 0 0011121
Q ss_pred HHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHH-HHHHHHhhhhhhhhccc-chhHHHHHHHHHHHH
Q 012438 340 ILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFL-FTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIMT 417 (463)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 417 (463)
.+....+.....+. ..+..+.+.+|.+|++.|+++.|+.+..+++ .+...|.+.+.+ +..+ +...+++.++..+++
T Consensus 339 ~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~ 416 (432)
T PRK10406 339 AFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVA 416 (432)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHH
Confidence 11111111111111 1234456668999999999999999988775 344577766644 5444 444444444444444
Q ss_pred HHHHHhc
Q 012438 418 TFMHFFL 424 (463)
Q Consensus 418 ~~~~~~~ 424 (463)
.+..+++
T Consensus 417 ~~~~~~l 423 (432)
T PRK10406 417 FLVSLML 423 (432)
T ss_pred HHHHHHh
Confidence 4444443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=275.83 Aligned_cols=346 Identities=17% Similarity=0.170 Sum_probs=245.4
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+.+++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|+++|++.+
T Consensus 42 ~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g 121 (426)
T PRK12307 42 YLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMA 121 (426)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNS 179 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~ 179 (463)
...+....++.|++|+++|++++++...+..+|.++++.+...+.+. .+||+.|++..+..++........||++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~---~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~ 198 (426)
T PRK12307 122 GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA---YGWRAAFFVGLLPVLLVIYIRARAPESKEW 198 (426)
T ss_pred hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc---CCHHHHHHHHHHHHHHHHHHHHHCCCChHH
Confidence 99999999999999999999999999999999999999886555433 579999988655444433333335666543
Q ss_pred HHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHH
Q 012438 180 IIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSP 259 (463)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
..++.+++++ +.+...+..+.++++.++++..+....... ..+........+..+.|
T Consensus 199 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 255 (426)
T PRK12307 199 EEAKLSGKGK----------------------HSQSAWSVFSLSMKGLFNRAQFPLTLCVFI-VLFSIFGANWPIFGLLP 255 (426)
T ss_pred HHhhhhcccc----------------------ccccchhhhhHHHHHHHhhchHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 2211000000 000000001113444444333322222222 22222223334566788
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHH
Q 012438 260 VLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYL 339 (463)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (463)
.++++.+.+..... .......++.+++.++.+++.||++||+.+..+..+..+..+.+... + .....
T Consensus 256 ~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~ 322 (426)
T PRK12307 256 TYLAGEGFDTGVVS-NLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-----------P-QDNYL 322 (426)
T ss_pred HHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----------c-cccHH
Confidence 88888887766666 67778888999999999999999999998887776655544333221 0 11111
Q ss_pred HHHHHHHHhhhh-hccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchh
Q 012438 340 ILVMVCLYSSGY-CYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGI 405 (463)
Q Consensus 340 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 405 (463)
....+.++.++ ..+..+....++.|.+|++.|++++|+.+...++++.++|.+.+.+.+..+...
T Consensus 323 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 323 -LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred -HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 11112222211 112223344556799999999999999999999999999999999999887544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=269.27 Aligned_cols=341 Identities=12% Similarity=0.039 Sum_probs=231.3
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
|.+++|+|+|+.+.|++.+.+++++.+++++.|+++||+|||+++..+......+.+....++|++.+++.|+++|++.+
T Consensus 15 p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~ 94 (368)
T TIGR00903 15 SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQP 94 (368)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhH
Confidence 34577889999999999999999999999999999999999988766555554444333333799999999999999998
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCChH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETPN 178 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~ 178 (463)
. .+.....++|++|+++|++++++.+.+..+|.+++++++..+.+. +|||+.|++.++++++..+.. +++||+|+
T Consensus 95 ~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~---~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 95 F-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA---GGLQLLIIPIAAVAAAGIILVLAALPALPF 170 (368)
T ss_pred H-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 6 456666779999999999999999999999999999998887653 589999999888877765555 45899875
Q ss_pred HHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhH
Q 012438 179 SIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYS 258 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
+..+ + .+. + +. .+++++++++ +.++...+..++....++.+..|+
T Consensus 171 ~~~~--~-~~~-~-----------------~~----------~~~~~~ll~~----~~~~~~~~~~~~~~~~~~~~~~wl 215 (368)
T TIGR00903 171 QAAE--G-FGF-K-----------------DA----------VKEFGALAGR----KDLWIIGAILGFGVALFDNLAIWL 215 (368)
T ss_pred CCCC--C-cch-H-----------------HH----------HHHHHHHHcC----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3210 0 000 0 00 0013344433 334555555666667778888999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---hhhhH-hhHHHHHHHHHHHHHHHhhhCCCCCCcc
Q 012438 259 PVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRK---VLFLV-GGIQMLVSQVMIGSIMAAQLGDHGGFSE 334 (463)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (463)
|.++++.+++.. .. ....+..+.+.++ .++++||..|| +.... .....++....+...
T Consensus 216 p~~L~~~g~s~~-~~-~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~------------- 277 (368)
T TIGR00903 216 EAALRPAGLEDI-AG-DAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE------------- 277 (368)
T ss_pred HHHHHHCCCChH-HH-HHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-------------
Confidence 999988777643 33 4444444444444 47788887553 32222 222222222222111
Q ss_pred hhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc-chhHHHHHHHH
Q 012438 335 GYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK-AGIFFFFGGLV 413 (463)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 413 (463)
......+...++.+.+.. ...+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. + ...+..+++..
T Consensus 278 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~ 354 (368)
T TIGR00903 278 LNRLALFAFIGIAGLLML-PAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILI 354 (368)
T ss_pred cccHHHHHHHHHHHHhhh-hhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 112222223333332222 2224456777899999999999999999999999999999988774 4 34455555554
Q ss_pred HHHHHHH
Q 012438 414 LIMTTFM 420 (463)
Q Consensus 414 ~~~~~~~ 420 (463)
.+.++..
T Consensus 355 ~i~~~~~ 361 (368)
T TIGR00903 355 TIAFAIA 361 (368)
T ss_pred HHHHHHH
Confidence 4444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=274.59 Aligned_cols=355 Identities=16% Similarity=0.135 Sum_probs=257.4
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+.+.+++|+++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+
T Consensus 39 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 118 (406)
T PRK11551 39 PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLG 118 (406)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCChH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETPN 178 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~ 178 (463)
...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+. .+||+.|++.++..++..+.. .++||+|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 195 (406)
T PRK11551 119 GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD---AAWRHIFYVGGVGPLLLVPLLMRWLPESRA 195 (406)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cCHHHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 99999999999999999999999999999999999999987655443 579999998877666555444 45888876
Q ss_pred HHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhH
Q 012438 179 SIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYS 258 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
+..++++ .++.++ ..+..++....++. .......+......+....|.
T Consensus 196 ~~~~~~~-~~~~~~------------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 243 (406)
T PRK11551 196 FAQAAGA-GKQRAP------------------------------VLRALFGEGRATAT-LLLWISYFFTLIVLYFLLNWL 243 (406)
T ss_pred HHhccCc-chhhhh------------------------------hHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4332211 000000 00111111111111 112222223333445666788
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHH
Q 012438 259 PVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAY 338 (463)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
|.++++.+.+....+ .......++.+++.++.|++.||++||+.+..+.....++.+.+... +..+
T Consensus 244 p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 309 (406)
T PRK11551 244 PSLLVGQGLSRSQAG-LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-------------PSFA 309 (406)
T ss_pred HHHHHhCCCChhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-------------CcHH
Confidence 999988888877777 77788888999999999999999999998877655555544433321 1222
Q ss_pred HHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccc-hhHHHHHHHHHHHH
Q 012438 339 LILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIMT 417 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 417 (463)
.......+.+.+.. +..+....+..|.+|++.|+++.|+.+....++..++|.+.|.+.++.+. ...+...+.+.+.+
T Consensus 310 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 388 (406)
T PRK11551 310 GMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVA 388 (406)
T ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHH
Confidence 22223333333222 22345566778999999999999999999999999999999999987653 33343444444444
Q ss_pred HHHHHhc
Q 012438 418 TFMHFFL 424 (463)
Q Consensus 418 ~~~~~~~ 424 (463)
.+..+.+
T Consensus 389 ~~~~~~~ 395 (406)
T PRK11551 389 ALAALLL 395 (406)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=277.83 Aligned_cols=373 Identities=13% Similarity=0.062 Sum_probs=252.1
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.|
T Consensus 47 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g 126 (434)
T PRK11663 47 PEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQG 126 (434)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCChH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETPN 178 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~ 178 (463)
...+...+++.|++|+++|++++++.+.+.++|..+++.+++.+.+. +|||+.|++.++++++..+.. +++||+|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~---~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~ 203 (434)
T PRK11663 127 WGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH---YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQ 203 (434)
T ss_pred ccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHHcCCCHh
Confidence 99999999999999999999999999999999999999987766543 579999999888776654443 45788775
Q ss_pred HHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhc-ccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 179 SIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQ-RKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+...+.. .++.++. . +..+ +.++.+.+.++.++ ...+++.++.+.+..+........+..|
T Consensus 204 ~~~~~~~-~~~~~~~----------~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (434)
T PRK11663 204 AMGLPSV-GEWRHDA----------L----ELAQ---QQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDW 265 (434)
T ss_pred hcCCCCc-ccccccc----------c----ccch---hccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4311111 0000000 0 0000 00001112222221 1122233444444444444455567778
Q ss_pred HHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc--CCchhhhHh-hHHHHHHHHHHHHHHHhhhCCCCCCc
Q 012438 258 SPVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKF--GRKVLFLVG-GIQMLVSQVMIGSIMAAQLGDHGGFS 333 (463)
Q Consensus 258 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (463)
.|.+++ +.|.+..+.. .......++..++.++.|+++||+ ++|+..... .....+....+... .
T Consensus 266 ~p~~l~~~~g~s~~~a~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-----------~ 333 (434)
T PRK11663 266 GNLYMSETLGVDLVTAN-SAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-----------P 333 (434)
T ss_pred HHHHHHhccCCCHHHHH-HHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-----------c
Confidence 898884 5688877766 777888889999999999999998 333332221 11211111111111 0
Q ss_pred chhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHH
Q 012438 334 EGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLV 413 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (463)
..............+.+ ..+..........|.+|++.|+++.|+.++..++|..++|.+.|.+.|+.++...+...+++
T Consensus 334 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~ 412 (434)
T PRK11663 334 FASYVMQAACFFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIA 412 (434)
T ss_pred cccHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHH
Confidence 01111111111112211 11111122344579999999999999999999999999999999999998866655555444
Q ss_pred HHH-HHHHHHhcCC
Q 012438 414 LIM-TTFMHFFLPE 426 (463)
Q Consensus 414 ~~~-~~~~~~~~~~ 426 (463)
.++ ++..+...++
T Consensus 413 ~~~~~~~~~~~~~~ 426 (434)
T PRK11663 413 AGISALLLLPFLNA 426 (434)
T ss_pred HHHHHHHHHHHHhh
Confidence 433 3333333433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=270.22 Aligned_cols=347 Identities=16% Similarity=0.189 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHH--------HHHHHHHHhhcccccccchhhHHh
Q 012438 38 SSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIY--------MLIFGRLLLGVGIGFGNQSVPLYL 109 (463)
Q Consensus 38 s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i 109 (463)
++.+++..+++++.|+++||+|||+++..+.++++++++++++++|++ .+++.|+++|++.|+.++....++
T Consensus 71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 150 (438)
T PRK09952 71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA 150 (438)
T ss_pred HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 345677889999999999999999999999999999999999999987 588999999999999999999999
Q ss_pred hhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC-----CcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhhC
Q 012438 110 SEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK-----GGWGWRISLAMAAAPASILTIGAIFLPETPNSIIQRS 184 (463)
Q Consensus 110 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 184 (463)
.|++|+++|++..+..+.+..+|.+++..+...+.... ..+|||++|++.+++.++........||+|++...++
T Consensus 151 ~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~ 230 (438)
T PRK09952 151 VESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQH 230 (438)
T ss_pred HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHh
Confidence 99999999999999999999999999877665543321 2368999999988877665555455888886532221
Q ss_pred CcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhh-hhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHH
Q 012438 185 NDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKN-IAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFR 263 (463)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (463)
+ .++ .+.+.+..+ +.++ ++.+.......+......+....|.|.+.+
T Consensus 231 ~-~~~----------------------------~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 278 (438)
T PRK09952 231 E-QAA----------------------------AKKRIPVIEALLRH---PGAFLKIIALRLCELLTMYIVTAFALNYST 278 (438)
T ss_pred h-ccc----------------------------ccccCCHHHHHHHc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 000 000111111 2211 122222222233333445566678887775
Q ss_pred -HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHH
Q 012438 264 -TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILV 342 (463)
Q Consensus 264 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (463)
..+.+..... ......++..+++.++.|+++||+|||+.+..+.++..++...+..... ..+..+..+.
T Consensus 279 ~~~g~s~~~~~-~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 348 (438)
T PRK09952 279 QNLGLPRELFL-NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE---------AQSIFWIVFF 348 (438)
T ss_pred HhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---------cCChHHHHHH
Confidence 4566654433 4445556777888899999999999999887776555443332222110 0011222222
Q ss_pred HHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHH-HHHHHHHhhhhhhhhccc--chhHHHHHHHHHHHHHH
Q 012438 343 MVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF-LFTFLTAQTFLPMLCHFK--AGIFFFFGGLVLIMTTF 419 (463)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 419 (463)
...+.+.+.+.. .+..+.+..|.+|++.|+++.++.+.... +++.++|.+.+.+.+..+ +...+.+.+++.+++.+
T Consensus 349 ~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v 427 (438)
T PRK09952 349 SIMLANIAHDMV-VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAM 427 (438)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 223323332222 23456677899999999999999776654 899999999999988543 44445555555555555
Q ss_pred HHHhcCCC
Q 012438 420 MHFFLPET 427 (463)
Q Consensus 420 ~~~~~~~~ 427 (463)
..+..+++
T Consensus 428 ~~~~~~~~ 435 (438)
T PRK09952 428 TALLMKDN 435 (438)
T ss_pred HHHHcccc
Confidence 55666553
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=267.64 Aligned_cols=345 Identities=14% Similarity=0.119 Sum_probs=248.0
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccc
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 98 (463)
-|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++..++++++++++|++.+++.|+++|++.
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~ 111 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAH 111 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCCh
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETP 177 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~ 177 (463)
+...+...+++.|++|+++|++++++...+.++|..++++++..+.+. .|||+.|++.++++++..+..++ +||.|
T Consensus 112 ~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 112 AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY---LGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 998999999999999999999999999999999999999998776543 47999999998887776555443 66654
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+. ++ ++ .++.++.++++. .........+.. ........+
T Consensus 189 ~~----~~--~~-------------------------------~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~ 227 (390)
T PRK03545 189 SE----HS--GS-------------------------------LKSLPLLFRRPA---LVSLYLLTVVVV-TAHFTAYSY 227 (390)
T ss_pred CC----Cc--ch-------------------------------HHHHHHHHhCcH---HHHHHHHHHHHH-HHHHHHHHH
Confidence 20 00 00 001122222221 111122222212 222333455
Q ss_pred HHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 258 SPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 258 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
.+.++++ .+.+..... .......++.++++++.+++.||++||.. ..+..+..++...+... .++
T Consensus 228 ~~~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~------------~~~ 293 (390)
T PRK03545 228 IEPFVQQVAGLSENFAT-LLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPA------------ANS 293 (390)
T ss_pred HHHHHHHhcCCCccHHH-HHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHH------------hch
Confidence 5555554 577776666 77777888999999999999999998764 34444443333332221 022
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHH
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM 416 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (463)
.+.......+.+.+.. ...+.......+..| +.|++++|+.+...++|..++|.+.|.+.|+.+....+...+.+.+.
T Consensus 294 ~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~ 371 (390)
T PRK03545 294 EWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALA 371 (390)
T ss_pred HHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 3333334444444432 222333445567766 68899999999999999999999999999999876666555555555
Q ss_pred HHHHHHh
Q 012438 417 TTFMHFF 423 (463)
Q Consensus 417 ~~~~~~~ 423 (463)
+.+....
T Consensus 372 ~~~~~~~ 378 (390)
T PRK03545 372 ALVWSIL 378 (390)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=267.39 Aligned_cols=352 Identities=13% Similarity=0.038 Sum_probs=252.0
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccc
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 98 (463)
.|++++|+|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+++|++.
T Consensus 32 lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~ 111 (393)
T PRK09705 32 LPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGI 111 (393)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcC-CCCh
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFL-PETP 177 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~-~e~~ 177 (463)
+...+....++.+++| ++|+++++.+..+..+|..+++.++..+.+.. .+||+.+.+.++..++..+..+.. ++.|
T Consensus 112 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (393)
T PRK09705 112 GIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVALFAWWWQSAREV 188 (393)
T ss_pred HHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999997 88999999999999999999998877655432 279998877666655443333332 2211
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+ + ++ ++ +...++.++ +++ .+...+..+.....+.....|
T Consensus 189 ~------~--~~----------------------------~~-~~~~~~~l~---~~~-~~~l~~~~~~~~~~~~~~~~~ 227 (393)
T PRK09705 189 A------S--SH----------------------------KT-TTTPVRVVF---TPR-AWTLGVYFGLINGGYASLIAW 227 (393)
T ss_pred c------c--cc----------------------------CC-CcCCccccc---CHh-HHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 00 001111111 122 222333333344556677788
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhH
Q 012438 258 SPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYA 337 (463)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (463)
.|.++++.+.+....+ .......++.++++++.+++.||++||+....+..+..++...+... +.. .
T Consensus 228 lp~~l~~~g~s~~~ag-~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~-~ 294 (393)
T PRK09705 228 LPAFYIEIGASAQYSG-SLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL-----------PLQ-L 294 (393)
T ss_pred HHHHHHHcCCChhhhh-HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc-----------cch-H
Confidence 9999988888877666 77888899999999999999999999998888776666655443322 111 1
Q ss_pred HHHHHHHHHHhhhhhccccceecccccccC-CcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc-chhHHHHHHHH-H
Q 012438 338 YLILVMVCLYSSGYCYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK-AGIFFFFGGLV-L 414 (463)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~ 414 (463)
.... ..+.+.+.+... |.......+.. |++.++++.|+.+...++++.++|.+.|.+.|..+ +...+....++ +
T Consensus 295 ~~~~--~~l~g~g~g~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~ 371 (393)
T PRK09705 295 PVLW--AMVCGLGLGGAF-PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVV 371 (393)
T ss_pred HHHH--HHHHHHhccchH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 1111 122233333222 33333334555 46789999999999999999999999999999986 44444443333 3
Q ss_pred HHHHHHHHhcCCCCCC
Q 012438 415 IMTTFMHFFLPETKNV 430 (463)
Q Consensus 415 ~~~~~~~~~~~~~~~~ 430 (463)
+..++.....||++++
T Consensus 372 ~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 372 GLMIITLRFAPARFPQ 387 (393)
T ss_pred HHHHHHHHhccccccc
Confidence 3344445556666554
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=241.91 Aligned_cols=388 Identities=18% Similarity=0.204 Sum_probs=290.5
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
..++.+|.+..|..++....+.|..+++..+|..+|++|||+.+.+......+...+.+.++|+..+++.|.+.|+|.|+
T Consensus 103 ~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg 182 (528)
T KOG0253|consen 103 ALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG 182 (528)
T ss_pred HHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHH
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~ 180 (463)
.|...++-.|..|..+|...+-.. ..+.+|.++...++...... .||||.....+.+..+.+....++||+|++.
T Consensus 183 -~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~---~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~ 257 (528)
T KOG0253|consen 183 -LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN---FGWRYLLFTSSTPLMFAARFLVWVYESPRFY 257 (528)
T ss_pred -ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHHHhhcccCcchh
Confidence 899999999999999999977777 89999999999888766543 4899999988888888888888899999999
Q ss_pred HhhCCcHHHHHHHHHHHhCchhHH---------H--HHH----HHHH-HhhcccccCCchhhhhcccchhhHHHHHHHHH
Q 012438 181 IQRSNDHQKAQKMLQRVRGIADVE---------A--ELN----DLIR-ASSISKSITHPFKNIAQRKYRPQLVMAILIPF 244 (463)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (463)
..+++ ++++.+.++++.+.|... . +++ +..+ ..+..++.+....+++..+.++..+....+.+
T Consensus 258 ~~~G~-~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwf 336 (528)
T KOG0253|consen 258 LAKGD-DYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWF 336 (528)
T ss_pred hhcCC-hHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHH
Confidence 99888 777777777765433110 0 000 0001 01112334556677777777666665554444
Q ss_pred HHhhhhhhHHHhhHHHHHHHcC--------------------CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhh
Q 012438 245 FQQVTGINIVGLYSPVLFRTLK--------------------LGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLF 304 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 304 (463)
... ..++........+.+... .+..... .-..+..+..+.|.++.++++||+|||+.+
T Consensus 337 gna-fsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dY-rdllitslaefPGlLIt~~iverlGRKkTM 414 (528)
T KOG0253|consen 337 GNA-FSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDY-RDLLITSLAEFPGLLITGVIVERLGRKKTM 414 (528)
T ss_pred hhH-HHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHH-HHHHHHHHhhCCchhHHHHHHHHhcchhHH
Confidence 333 334444333333333211 1122222 445667789999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHH
Q 012438 305 LVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF 384 (463)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 384 (463)
..+.++..++.+++.... ..+.. ....+..-.+...+ ..+.+.|..|++|+..|+++.|.++..++
T Consensus 415 al~l~~f~iflfll~~c~-----------~rn~~--tvllf~arafisg~-fqvaYvYtPEVyPTavRatgvGtcSsmaR 480 (528)
T KOG0253|consen 415 ALSLILFGIFLFLLTTCK-----------TRNAY--TVLLFTARAFISGA-FQVAYVYTPEVYPTAVRATGVGTCSSMAR 480 (528)
T ss_pred HHHHHHHHHHHHHHHHhc-----------Ccchh--HHHHHHHHHHHhch-heEEEEecCcccchhhhhcchhhhhhHHh
Confidence 999999988877776542 12121 22222222222222 34778899999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 012438 385 LFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFFLPETKNVP 431 (463)
Q Consensus 385 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (463)
+|+++.|.+. ...+..-..+.+++.+++++.++..+++-.|+|+|.
T Consensus 481 IggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 481 IGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred hhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 9999999887 444444466777778888888887777777888875
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=267.48 Aligned_cols=355 Identities=16% Similarity=0.120 Sum_probs=246.7
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
.+++++|+++.+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.+++.|++.|++.+.
T Consensus 37 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 116 (405)
T TIGR00891 37 EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGG 116 (405)
T ss_pred HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhh
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHH
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~ 180 (463)
..+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+..+ .+||+.|++.++..++..+.....||++++.
T Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 195 (405)
T TIGR00891 117 EYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAEDWK 195 (405)
T ss_pred hhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 999999999999999999999999999999999999998877655432 3599999987777666666566688887544
Q ss_pred HhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHH
Q 012438 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPV 260 (463)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
.++++ .++.++..++..+..... + ...++...+.++. ...+++.+...................+.|.
T Consensus 196 ~~~~~-~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (405)
T TIGR00891 196 EKHAG-KALVRTMVDILYGGEHRI-------A--NIVMTLAAAMVQS--AGKRWPTFVYLVVLVLFANLYSHPIQDLLPT 263 (405)
T ss_pred HHhhh-hhhhhhHHHHHhccchhh-------h--hhhhhhhHHhhhh--hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 32221 111111111111000000 0 0000000001110 1111111221222222222223344556676
Q ss_pred HHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHH
Q 012438 261 LFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYL 339 (463)
Q Consensus 261 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (463)
+++ +.+.+..+.+ .......++.+++.++.+++.||++||+.+..+.....+........ ....+.
T Consensus 264 ~~~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 330 (405)
T TIGR00891 264 YLKADLGLSPHTVA-NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI------------GANVAV 330 (405)
T ss_pred HHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh------------CCchHH
Confidence 664 5677777666 77788889999999999999999999998877665543322222111 011222
Q ss_pred HHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc
Q 012438 340 ILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK 402 (463)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 402 (463)
......+.+.... ...+....+.+|.+|++.|++++|+.+...+++..++|.+.|.+.|+.+
T Consensus 331 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 331 LGLGLFFQQMLVQ-GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHHHHHHHHc-cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222222222222 2233445566899999999999999999999999999999999999887
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=265.21 Aligned_cols=367 Identities=18% Similarity=0.273 Sum_probs=233.8
Q ss_pred CccCCccccCchhHHHHH-HHH-----HHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHH--------
Q 012438 20 TKVGNYCKFDSQLLTTFT-SSL-----YITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIY-------- 85 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~-s~~-----~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~-------- 85 (463)
|.+.+|++.++.+.+.+. +.. +++..+++++.|+++||+|||+.++.+.+++.+++++++++++++
T Consensus 39 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 118 (434)
T PRK15075 39 TAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPL 118 (434)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 355777788887765443 322 223347899999999999999999999999999999999999987
Q ss_pred HHHHHHHHhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhccc-----CCcchhHHHHHhhH
Q 012438 86 MLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKI-----KGGWGWRISLAMAA 160 (463)
Q Consensus 86 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~-----~~~~gwr~~f~~~~ 160 (463)
.++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.++..+... .+.+|||++|++..
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 4689999999999999999999999999999999999999998888888888777665322 13468999999865
Q ss_pred HHHHHHHHHhhcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHH
Q 012438 161 APASILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAI 240 (463)
Q Consensus 161 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (463)
+...+........||++++..++++ .+.+..+++..+ .++.....
T Consensus 199 ~~~~~~~~~~~~~~e~~~~~~~~~~--------------------------------~~~~~~~~~~~~---~~~~~~~~ 243 (434)
T PRK15075 199 LIVPFIFLIRRSLEETEEFLARKHR--------------------------------PSMREIFRSLAA---NWRIVLAG 243 (434)
T ss_pred HHHHHHHHHHHhcCCCHHHHHhhhc--------------------------------cccccHHHHHHH---hHHHHHHH
Confidence 5433322222224444321100000 000011111111 11222222
Q ss_pred HHHHHHhhhhhhHHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHH
Q 012438 241 LIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIG 319 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 319 (463)
....+.....++....|.|.++++ .+.+..+.. .......++.+++.++.|+++||++||+.+..+..+..+......
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 322 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSL-LVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPAL 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 222333344566778889999876 688776665 677778888999999999999999999987765444332221111
Q ss_pred HHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHH-HHHHHHhhhhhhh
Q 012438 320 SIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFL-FTFLTAQTFLPML 398 (463)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~ 398 (463)
... . . ............+.+.+.+. ..+..+.+..|.+|++.|+++.++.+..... ++.++|.+.+.+.
T Consensus 323 ~~~-~---~-----~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~ 392 (434)
T PRK15075 323 SWL-V---A-----APSFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLI 392 (434)
T ss_pred HHH-H---c-----CCchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHH
Confidence 110 0 0 01111111111112222221 2233445668999999999999997666554 5888999999999
Q ss_pred hcccch-hHHHHHHHHHHHHHHHHHhcCCCCCCCH
Q 012438 399 CHFKAG-IFFFFGGLVLIMTTFMHFFLPETKNVPI 432 (463)
Q Consensus 399 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (463)
|..+.. ....+.....+++.+..+..+|.++.++
T Consensus 393 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (434)
T PRK15075 393 HVTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARL 427 (434)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence 987742 1111222222333344445555555443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=256.52 Aligned_cols=399 Identities=21% Similarity=0.245 Sum_probs=284.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh-------hHHHHHHHHHHhhcccc
Q 012438 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF-------NIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~~ 99 (463)
+.++.-.+.+..+..+|..+||++.|+++||+|||+++...+++..+++++++++. -.+++...|+++|+|.|
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG 159 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG 159 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence 45778889999999999999999999999999999999999999999999888762 24789999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC----Cc--------chhHHHHHhhHHHHHHHH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK----GG--------WGWRISLAMAAAPASILT 167 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~--------~gwr~~f~~~~~~~~~~~ 167 (463)
+-+|...+..+|...++.||...+.+.+..+.|.+.|.+++..+.... +. .=||..+.+.++++++++
T Consensus 160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l 239 (538)
T KOG0252|consen 160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL 239 (538)
T ss_pred CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888887766553221 11 249999999999999999
Q ss_pred HHhhcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchh--hHHHHHHHHHH
Q 012438 168 IGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRP--QLVMAILIPFF 245 (463)
Q Consensus 168 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 245 (463)
...+.+||++++.....++.+.+.+..++.... .+++..+.....+..+++.+...+...++ +.+.......+
T Consensus 240 y~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~-----~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WF 314 (538)
T KOG0252|consen 240 YFRLKMPETARYTALVSKKLKQAAGDMKKVLSV-----DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWF 314 (538)
T ss_pred HhhhcCCcchhHHHHhhcCHhhhhhcccccccc-----ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988755444444433211111111 01111111111111122222222211111 33444455555
Q ss_pred HhhhhhhHHHhhHHHHHHHcCCCCchhHH--------HHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHH
Q 012438 246 QQVTGINIVGLYSPVLFRTLKLGESTSLL--------LSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVM 317 (463)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 317 (463)
..-..++....+...+++..++.+..... .-..+.....++|..+...++|++|||+..+.++.++.+..+.
T Consensus 315 llDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~ 394 (538)
T KOG0252|consen 315 LLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFV 394 (538)
T ss_pred hhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHH
Confidence 55567777788888888887776554431 1112222333446666677899999999999999999888777
Q ss_pred HHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhh
Q 012438 318 IGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPM 397 (463)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 397 (463)
+..... +........++..+..+....+.+.....+.+|.+|++.|++..|+....+.+|++++...+.++
T Consensus 395 ~~~~y~---------~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~ 465 (538)
T KOG0252|consen 395 IAGPYN---------QLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYL 465 (538)
T ss_pred HcCCcc---------cccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHh
Confidence 765421 01122333444445555556666778888899999999999999999999999999999999999
Q ss_pred hh-----cccchhHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 012438 398 LC-----HFKAGIFFFFGGLVLIMTTFMHFFLPETKNVPIEQMDKVW 439 (463)
Q Consensus 398 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (463)
.+ ..+....++..+.+.+.+.+..+++||+++++++|++++.
T Consensus 466 t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 466 TDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEE 512 (538)
T ss_pred hhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChh
Confidence 98 4554444445555556666667778899999998885543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=268.16 Aligned_cols=371 Identities=16% Similarity=0.153 Sum_probs=247.1
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+.+..+.++.+++.++++++++++.+++.|++.|++.+
T Consensus 44 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 123 (496)
T PRK03893 44 TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMA 123 (496)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNS 179 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~ 179 (463)
...+....++.|++|+++|++++++...+..+|..+++.++..+.+. .+||+.|++..+..++..+....+||++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~ 200 (496)
T PRK03893 124 GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV---WGWRALFFIGILPIIFALWLRKNLPEAEDW 200 (496)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 99999999999999999999999999999999999999998766543 589999988665555444444557887654
Q ss_pred HHhhCCcHHHHHHHHHHHhCchhHHHHH-HHHH---H-HhhcccccCCchh-------------h--hhcccchhhHHHH
Q 012438 180 IIQRSNDHQKAQKMLQRVRGIADVEAEL-NDLI---R-ASSISKSITHPFK-------------N--IAQRKYRPQLVMA 239 (463)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~-~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~~ 239 (463)
..++++ .++.++..+.....+...... .... . ...........+. . ......+.+....
T Consensus 201 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (496)
T PRK03893 201 KEKHAG-KAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVM 279 (496)
T ss_pred hhhccc-cccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 332211 111111111100000000000 0000 0 0000000000000 0 0000111111222
Q ss_pred HHHHHHHhhhhhhHHHhhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHH
Q 012438 240 ILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMI 318 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 318 (463)
.....+...........+.|.+++ +.+.+..+.+ .......++.+++.++.|++.||++||+.+..+..+..+..+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g-~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 358 (496)
T PRK03893 280 LMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVA-NVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPV 358 (496)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 222222222222235567888885 7788877777 78888889999999999999999999998877665554443332
Q ss_pred HHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhh
Q 012438 319 GSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPML 398 (463)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 398 (463)
... .....+.......+.+ +.+.+..+....+..|.+|++.|++++|+.+....+|+.++|.+.|.+.
T Consensus 359 ~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~ 426 (496)
T PRK03893 359 FAI-----------GGANVWVLGLLLFFQQ-MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA 426 (496)
T ss_pred hhc-----------cccHHHHHHHHHHHHH-HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh
Confidence 221 0111222212222111 1122223444556689999999999999999999999999999999999
Q ss_pred hcccchhHH
Q 012438 399 CHFKAGIFF 407 (463)
Q Consensus 399 ~~~~~~~~~ 407 (463)
+..++...+
T Consensus 427 ~~~g~~~~~ 435 (496)
T PRK03893 427 QRLDLGTAL 435 (496)
T ss_pred ccCChHHHH
Confidence 998865443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=263.49 Aligned_cols=373 Identities=14% Similarity=0.101 Sum_probs=256.4
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
|.+++++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+
T Consensus 18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 97 (399)
T TIGR00893 18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEA 97 (399)
T ss_pred HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCChH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETPN 178 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~~ 178 (463)
...+....++.|++|+++|++.+++.+....+|..+++.+++.+.+. .+||+.|++.++..++..+..++ .||+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 98 PFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH---FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 99999999999999999999999999999999999999998765543 47999999988887776665544 666553
Q ss_pred HHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhH
Q 012438 179 SIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYS 258 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
.... .++++.+...+... .+ .+.++.+++.+...++.++ ++.++...+..+...........+.
T Consensus 175 ~~~~--~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (399)
T TIGR00893 175 KAKW--LTEEEKYIVVGGLL---------AE-QQGKGPSTPKKYQIKELLK----DRRVWGLALGQFLVNIGLGFFLTWF 238 (399)
T ss_pred cccc--CCHHHHhhcchhhc---------cc-cccccccCCCccchHHHhc----CHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2110 10111000000000 00 0000111111222333332 2233434444455555666777788
Q ss_pred HHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHh-hHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 259 PVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVG-GIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 259 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
|.++++ .+.+..+.. .......++.+++.++.+++.||++||+..... .....++.+......... . ..+.
T Consensus 239 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~ 311 (399)
T TIGR00893 239 PTYLVQERGLSILEAG-FMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT-N-----YVNI 311 (399)
T ss_pred HHHHHHHhcccHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh-c-----cchh
Confidence 888765 566665555 777888889999999999999999998622111 111111111111111000 0 0112
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc-chhHHHHHHHHHH
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLI 415 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 415 (463)
.+..+....+...+ .+..+..+.+.+|.+|++.|+++.|+.+...++|..++|.+.+.+.+..+ +...+...++..+
T Consensus 312 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~ 389 (399)
T TIGR00893 312 PYAALALVALGFFG--LGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALAL 389 (399)
T ss_pred HHHHHHHHHHHHhc--hhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHH
Confidence 22222222222222 22456777788999999999999999999999999999999999999887 6555554444444
Q ss_pred HHHHH
Q 012438 416 MTTFM 420 (463)
Q Consensus 416 ~~~~~ 420 (463)
.+.+.
T Consensus 390 ~~~~~ 394 (399)
T TIGR00893 390 IGALS 394 (399)
T ss_pred HHHHH
Confidence 44433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=260.61 Aligned_cols=347 Identities=13% Similarity=0.061 Sum_probs=248.6
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccc
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 98 (463)
.|.+++++|+|..+.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.
T Consensus 26 ~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 105 (377)
T TIGR00890 26 APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGV 105 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCCh
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETP 177 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~ 177 (463)
+...+.....+.|++| ++|+++.++...+.++|..+++++...+.+ ..+||+.|++.++..++..+..++ ++|+|
T Consensus 106 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (377)
T TIGR00890 106 GIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN---LEGVPAAFIYMGIIFLLVIVLGAFLIGYPP 181 (377)
T ss_pred HHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence 9888888888999997 679999999999999998876655443332 257999999999888877666554 55443
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+...++++ +. ++.+.+.++.++++. ++......+...........+
T Consensus 182 ~~~~~~~~--~~----------------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 227 (377)
T TIGR00890 182 GQLIKTNI--EV----------------------------SVKDYTVWEMLRTPQ----FWVLYLSFFLNAVSGLLLIGL 227 (377)
T ss_pred hhccccCc--cc----------------------------chhhhhHHHHHcCcc----HHHHHHHHHHHhHHHHHHHHH
Confidence 21100000 00 000011222222222 222222222222233334445
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhH
Q 012438 258 SPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYA 337 (463)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (463)
.+.+.++.+.+..... .......++.++++++.+++.||++||+.+..+..+..++.+.+... +....
T Consensus 228 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 295 (377)
T TIGR00890 228 YKPYGQSLGLSDGFLV-LAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI-----------PMLND 295 (377)
T ss_pred HHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc-----------ccchh
Confidence 5666777777765555 77788888999999999999999999999888777777766554432 01112
Q ss_pred HHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHH
Q 012438 338 YLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM 416 (463)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (463)
........+.+.+.+.. .+....+.+|.+|+++|+++.|+.+....+|..++|.+.+.+.+..++...+...+++.++
T Consensus 296 ~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 296 VLFLATVALVFFTWGGT-ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred HHHHHHHHHHHHHhccc-hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 22222223333333322 2344456689999999999999999999999999999999999988876655555544443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=263.08 Aligned_cols=374 Identities=14% Similarity=0.024 Sum_probs=241.6
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh----hHHHHHHHHHHhhc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF----NIYMLIFGRLLLGV 96 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~ 96 (463)
.+.++ |+++.+.+++.+.+.+++.+++++.|+++||+|||++++.+.++++++.+++++++ +++.+++.|++.|+
T Consensus 54 ~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi 132 (452)
T PRK11273 54 YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 132 (452)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH
Confidence 44566 89999999999999999999999999999999999999999999999999888763 78889999999999
Q ss_pred ccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHH-HHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCC
Q 012438 97 GIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVL-SANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLP 174 (463)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~ 174 (463)
+.+..++.....+.|++|+++|++++++++.+.++|.. .+++++..+... .+||+.|++.+++.++..++. +++|
T Consensus 133 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~gw~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 133 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF---NDWHAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred HHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999888888999999999999999999999998864 455543322222 379999999888777755444 5588
Q ss_pred CChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhc-ccchhhHHHHHHHHHHHhhhhhhH
Q 012438 175 ETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQ-RKYRPQLVMAILIPFFQQVTGINI 253 (463)
Q Consensus 175 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 253 (463)
|+|+....+ + +++.++ +. .+ ..+.+++.+.+.++.+. ...+++.++...+..+......+.
T Consensus 210 ~~~~~~~~~-~-~~~~~~---~~------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (452)
T PRK11273 210 DTPQSCGLP-P-IEEYKN---DY------PD-------DYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYG 271 (452)
T ss_pred CCHhhcCCC-C-hhhhhh---cc------cc-------ccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 887532111 1 111000 00 00 00000001112222211 122233344444444444445566
Q ss_pred HHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc--CCchhhhH-hhHHHHHHHHHHHHHHHhhhCCC
Q 012438 254 VGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKF--GRKVLFLV-GGIQMLVSQVMIGSIMAAQLGDH 329 (463)
Q Consensus 254 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 329 (463)
...|.|.++++ .+++....+ .......++.+++.++.|+++||+ +||+.... ...+..++...+...
T Consensus 272 ~~~~~P~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-------- 342 (452)
T PRK11273 272 ILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-------- 342 (452)
T ss_pred HHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh--------
Confidence 77899999976 577766665 666778888899999999999998 44443222 112222222211111
Q ss_pred CCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHH-HHhhhhhhhhcccchhHHH
Q 012438 330 GGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFL-TAQTFLPMLCHFKAGIFFF 408 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 408 (463)
...+.+.........+.... +.......+..|.+|++.||++.|+.+...++|+.+ +|.+.|.+.|..++...+.
T Consensus 343 ---~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~ 418 (452)
T PRK11273 343 ---PAGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 418 (452)
T ss_pred ---cccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHH
Confidence 00112222222222222111 111122334569999999999999999999988765 7999999999988665554
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 012438 409 FGGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~ 429 (463)
..+.+.+++++...+..+.++
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~ 439 (452)
T PRK11273 419 VMIGGSILAVILLIVVMIGEK 439 (452)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 444444444444444433333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=255.80 Aligned_cols=340 Identities=14% Similarity=0.088 Sum_probs=238.2
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+.+++|+|.+..+.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++++++|++.+++.|+++|++.+
T Consensus 27 ~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~ 106 (382)
T PRK10091 27 TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHG 106 (382)
T ss_pred HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCChH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETPN 178 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~ 178 (463)
...+....++.|++|+++|+++++....+..+|..++++++..+.+. .+||+.|++.++..++..+.. .++||.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~ 183 (382)
T PRK10091 107 AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE---FSWRYTFLLIAVFNIAVLASIYFWVPDIRD 183 (382)
T ss_pred HHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 98888899999999999999999999999999999999988776543 479999999888777665544 34777542
Q ss_pred HHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhH
Q 012438 179 SIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYS 258 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
. ++ .+. + ..++ .+++ ++.+. .....+...........+.
T Consensus 184 ~----~~-~~~-~------------------------------~~~~-~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~ 222 (382)
T PRK10091 184 E----AK-GGL-R------------------------------EQFH-FLRS---PAPWL-IFAATMFGNAGVFAWFSYI 222 (382)
T ss_pred c----cc-cCH-H------------------------------HHHH-HhcC---hHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 0 00 000 0 0001 1111 11121 2222222222223333444
Q ss_pred HHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhH
Q 012438 259 PVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYA 337 (463)
Q Consensus 259 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (463)
+.+++ ..+.++.... .......++.+++.++.+++.||+++|+.+..+..+.+++.+.+.... +..
T Consensus 223 ~~~~~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~ 289 (382)
T PRK10091 223 KPYMMFISGFSETSMT-FIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG------------GMK 289 (382)
T ss_pred HHHHHHhcCCCHHHHH-HHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH------------hhH
Confidence 54554 4677777666 778888899999999999999999999988887777766655443321 112
Q ss_pred HHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc-cchhHHHHHHHHHHH
Q 012438 338 YLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF-KAGIFFFFGGLVLIM 416 (463)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 416 (463)
+.......+.+.+......+.......+..|++.++.+ ..+....+|..++|.+.|.+.|.. ++...+...++..++
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~ 367 (382)
T PRK10091 290 TASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFA 367 (382)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHH
Confidence 22233333333332222223333333444455555544 346778999999999999999964 555555544444433
Q ss_pred HH
Q 012438 417 TT 418 (463)
Q Consensus 417 ~~ 418 (463)
.+
T Consensus 368 ~~ 369 (382)
T PRK10091 368 AM 369 (382)
T ss_pred HH
Confidence 33
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=255.85 Aligned_cols=344 Identities=15% Similarity=0.119 Sum_probs=243.4
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh--------hhHHHHHHHHHH
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA--------FNIYMLIFGRLL 93 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--------~~~~~l~~~r~l 93 (463)
+++++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++++++.+.+.++ .+++.+++.|++
T Consensus 42 i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 121 (399)
T PRK05122 42 VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLL 121 (399)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999988877766553 257789999999
Q ss_pred hhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcC
Q 012438 94 LGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFL 173 (463)
Q Consensus 94 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 173 (463)
+|++.+...+....++.|++|+++|++++++...+..+|.++++.++..+.+. .|||+.+++.++..++..+.....
T Consensus 122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 198 (399)
T PRK05122 122 LGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW---GGLAGLGLLIMLLALLGLLLARPR 198 (399)
T ss_pred HHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998776553 479999888776655444433333
Q ss_pred CCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhH
Q 012438 174 PETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINI 253 (463)
Q Consensus 174 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (463)
|++++. ++ + +.++++.+++.... .. ........+..
T Consensus 199 ~~~~~~----~~--~--------------------------------~~~~~~~~~~~~~~--~~----~~~~~~~~~~~ 234 (399)
T PRK05122 199 PAVPPV----KG--E--------------------------------RLPFRRVLGRVWPY--GM----GLALASIGFGT 234 (399)
T ss_pred CCCCCC----Cc--c--------------------------------chhHHHHHHHHHHH--HH----HHHHHHHHHHH
Confidence 432210 00 0 00111111110000 01 11111123334
Q ss_pred HHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCc
Q 012438 254 VGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFS 333 (463)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (463)
...+.+.+.++.+.+ ... .......++.+++.++.+++.||+++|+.+..+..+..++...+...
T Consensus 235 ~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------ 299 (399)
T PRK05122 235 IATFITLYYAARGWD--GAA-LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA------------ 299 (399)
T ss_pred HHHHHHHHHHHcccc--cch-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------------
Confidence 456667777666553 223 44566777888999999999999999998887777666665554432
Q ss_pred chhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHH
Q 012438 334 EGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLV 413 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (463)
++.+..+....+.+.+.+... +.......|..|++.|+++.|+.+....+|..+++.+.|.+.+..++...+...+++
T Consensus 300 -~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 377 (399)
T PRK05122 300 -PSPWMALIGAALTGFGFSLVF-PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALA 377 (399)
T ss_pred -ccHHHHHHHHHHHHHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 223333344444444444332 333344468889999999999999999999999999999999988876666555555
Q ss_pred HHHHHHHHHhcCCCCC
Q 012438 414 LIMTTFMHFFLPETKN 429 (463)
Q Consensus 414 ~~~~~~~~~~~~~~~~ 429 (463)
.+++.+.....+++++
T Consensus 378 ~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 378 ALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHhccccc
Confidence 5555555555555443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=257.24 Aligned_cols=391 Identities=18% Similarity=0.155 Sum_probs=271.2
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccc
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQ 103 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 103 (463)
+.++.+.....+..+++++|..+|++++|+++||+|||++++.++++..++.+++++++|++.+++.|++.|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 55667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhh
Q 012438 104 SVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSIIQR 183 (463)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 183 (463)
....+++|++++++|+.+..+ ......+..+++..++++.. +||+.+++..+++++.++..++.||+|+|+..+
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK 264 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence 999999999999999999999 55555555555555544443 699999999999998888866678999999999
Q ss_pred CCcHHHHHHHHHHHhCch----hHHHHHHHH---HHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHh
Q 012438 184 SNDHQKAQKMLQRVRGIA----DVEAELNDL---IRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGL 256 (463)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
++ .+++.+.+++..+.+ +........ .+......+.+..+.++++.+..++.........+.....++.
T Consensus 265 g~-~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~g--- 340 (521)
T KOG0255|consen 265 GR-IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYG--- 340 (521)
T ss_pred Cc-hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHh---
Confidence 88 677877777765432 111111111 1111111112234566665542222222222222111111111
Q ss_pred hHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 257 YSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
++......|.+.. ......+..........+...|++|||.....+..+..++++...+... ...
T Consensus 341 -l~~~~~~lg~~~~----~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 405 (521)
T KOG0255|consen 341 -LSLNVSGLGGNIY----LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD----------DLG 405 (521)
T ss_pred -hhhhhhhcCchHH----HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc----------cch
Confidence 1112222332222 3444555577888888899999999999999999999888888877631 111
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHH
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM 416 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (463)
.+...+...+...+.+.++... +.+.+|++|+..|..+.+..+....++++++|.+...............++....+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (521)
T KOG0255|consen 406 GWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLL 484 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 1122222222222333333333 677789999999999999999999999999998875444422222222245566666
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHh
Q 012438 417 TTFMHFFLPETKNVPIEQMDKVWR 440 (463)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~ 440 (463)
+.+...++||++++.+.+..++.+
T Consensus 485 ~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 485 GLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHhcCcccCCCCCchhHHHHH
Confidence 666678999999988765544433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=263.98 Aligned_cols=361 Identities=14% Similarity=0.034 Sum_probs=227.8
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+.+.+|+|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|+++|++.+
T Consensus 60 ~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~ 139 (476)
T PLN00028 60 PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLA 139 (476)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcc----c--CCcchhHHHHHhhHHHHHHHHHHhhcC
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQK----I--KGGWGWRISLAMAAAPASILTIGAIFL 173 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~----~--~~~~gwr~~f~~~~~~~~~~~~~~~~~ 173 (463)
... ....+++|++|+++|++++++.....++|..+++.+...+.. . .+..|||+.|++.++++++..+..+++
T Consensus 140 ~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 140 TFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred hhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 654 456789999999999999999987777777766655433321 1 112489999999999888776666655
Q ss_pred CC-ChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccc-cCCchhhhhcccchhhHHHHHHHHHHHhhhhh
Q 012438 174 PE-TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKS-ITHPFKNIAQRKYRPQLVMAILIPFFQQVTGI 251 (463)
Q Consensus 174 ~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (463)
++ .|+. + .++.++ +.+.+++ ....+++.++. ++ .+.+.+.++......
T Consensus 219 ~~~~p~~-----~-~~~~~~--------------------~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~ 268 (476)
T PLN00028 219 GQDLPDG-----N-YRELKK--------------------SGTMPKDSFSKVLRYGVTN---YR-TWILALTYGYSFGVE 268 (476)
T ss_pred cCcCCCC-----c-hhhHHh--------------------cCccccccHHHHHHHHHcC---ch-hHHHHHHHHHHHHHH
Confidence 43 3310 0 000000 0000000 00111222211 12 222333333333333
Q ss_pred hHHHhhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh----hhHhhHHHHHHHHHHHHHHHhhh
Q 012438 252 NIVGLYSPVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVL----FLVGGIQMLVSQVMIGSIMAAQL 326 (463)
Q Consensus 252 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 326 (463)
..+..+.|.++. +.+.+...+. ....+..++.+++.++.|+++||++||+. .........+..+......
T Consensus 269 ~~~~~~~p~~l~~~~g~s~~~a~-~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~---- 343 (476)
T PLN00028 269 LTMDNIIAEYFYDRFGLSLETAG-AIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG---- 343 (476)
T ss_pred HHHHhHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc----
Confidence 445667777765 4588877766 78888899999999999999999986521 1111111111111111110
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhH
Q 012438 327 GDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIF 406 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 406 (463)
...+.+..+..+.+++.+..... +..+.+..+..| +.+|++.|+.+..+++|+.++|.+.+ ..+..++...
T Consensus 344 ------~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~ 414 (476)
T PLN00028 344 ------RANSLGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETG 414 (476)
T ss_pred ------ccchHHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhH
Confidence 00112222223333333322221 233444456544 78999999999888888888887754 2122234444
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 012438 407 FFFGGLVLIMTTFMHFFLP 425 (463)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~ 425 (463)
+.+.+++.+++.++.++.+
T Consensus 415 f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 415 ISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 4444545555555555554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=249.14 Aligned_cols=336 Identities=17% Similarity=0.114 Sum_probs=241.9
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccc
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 98 (463)
-+.+.+++|.++.+.++..+.+.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.+++.|+++|++.
T Consensus 43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 122 (394)
T PRK10213 43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL 122 (394)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCCh
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETP 177 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~ 177 (463)
+...+...+++.|++|+++|++++++...+.++|..+++.++..+.+. +|||+.|++.++++++..+.... .||+|
T Consensus 123 g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 123 GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999999999999999999999999877654 57999999988777665554433 67654
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
++ + ++ ...+.++.+++ ++ ++...+..+...........+
T Consensus 200 ~~-----~--~~------------------------------~~~~~~~~l~~---~~-~~~~~~~~~~~~~~~~~~~~~ 238 (394)
T PRK10213 200 GE-----P--SH------------------------------QKQNTFRLLQR---PG-VMAGMIAIFMSFAGQFAFFTY 238 (394)
T ss_pred cc-----c--cc------------------------------chhHHHHHhcC---HH-HHHHHHHHHHHHHHHHHHHHH
Confidence 21 0 00 00011122221 22 222222222222233333444
Q ss_pred -HHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 258 -SPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 258 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
.|.+.++.|.+....+ ......+++.+++.++.+++.||.+ |+.+..+..+.....+.+.... +.
T Consensus 239 ~~p~~~~~~g~s~~~~g-~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~------------~~ 304 (394)
T PRK10213 239 IRPVYMNLAGFGVDGLT-LVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG------------SD 304 (394)
T ss_pred HHHHHHHhcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh------------hh
Confidence 4777777888877666 7777788899999999999999954 4443333333333322222221 22
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHH
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVL 414 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (463)
.+.......+.+.++.... +.....+.+..| +.++.+.++.....++|..+++.+.|.+.|..+....+..+++..
T Consensus 305 ~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~ 380 (394)
T PRK10213 305 KIVATGVAIIWGLTFALVP-VGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM 380 (394)
T ss_pred HHHHHHHHHHHHHHHHhhh-HHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 3444444555555554332 333334467677 556677788888889999999999999999888666555554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=258.84 Aligned_cols=361 Identities=14% Similarity=0.020 Sum_probs=257.0
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHhhcc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGS-----AFNIYMLIFGRLLLGVG 97 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~ 97 (463)
.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+. .++++.+++.|+++|++
T Consensus 44 ~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 123 (417)
T PRK10489 44 IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFF 123 (417)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999999999999999999988888777665442 56789999999999999
Q ss_pred cccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCCh
Q 012438 98 IGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETP 177 (463)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~ 177 (463)
.+...+...+++.|++|+++|+++.++...+.++|..+|+.+++.+.+. .+||+.|++.++..++..+..+.+||++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (417)
T PRK10489 124 GSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA---GGVAWNYGLAAAGTFITLLPLLRLPALP 200 (417)
T ss_pred HHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8888888899999999999999999999999999999999998876553 3699999988887777666666677764
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+... ++ +++.+ + .++.++..++++. +....+..+... .......+
T Consensus 201 ~~~~--~~-~~~~~-----------------~----------~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~ 245 (417)
T PRK10489 201 PPPQ--PR-EHPLR-----------------S----------LLAGFRFLLASPV----VGGIALLGGLLT-MASAVRVL 245 (417)
T ss_pred CCCc--cc-ccchH-----------------H----------HHHHHHHHHcChH----HHHHHHHHHHHH-HHHhHHHh
Confidence 2110 00 00000 0 0011222222221 111111111111 12345567
Q ss_pred HHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 258 SPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 258 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
.|.+.++ .+.+....+ .......++.+++.++.+++.||.++++.+..+..+..++.+.+... ++
T Consensus 246 ~p~~~~~~~g~~~~~~g-~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~ 311 (417)
T PRK10489 246 YPALADEVWQMGAAQIG-LLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------------PM 311 (417)
T ss_pred hHHHHHhccCCChhHhH-HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------------ch
Confidence 7888887 677766666 77778888999999999999999777777777666665555444321 22
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccc-hhHHHHHHHHHH
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI 415 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 415 (463)
.+...+...+++.+.+.. .+...++..|..|++.||+++|+.+...++|..++|.+.|.+.+..+. ..+...+++..+
T Consensus 312 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~ 390 (417)
T PRK10489 312 WILAVLCLALFGYLSAIS-SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLI 390 (417)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence 233333444444333322 344456668999999999999999999999999999999999998875 445555666666
Q ss_pred HHHHHHHhcCCCCCCCHHHHH
Q 012438 416 MTTFMHFFLPETKNVPIEQMD 436 (463)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~ 436 (463)
++++.....+++|+++.+|++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 391 IGVLLLLVLGELRRFRQTPPE 411 (417)
T ss_pred HHHHHHHhccccccccccccc
Confidence 677777777877766554433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=260.56 Aligned_cols=362 Identities=12% Similarity=0.004 Sum_probs=252.4
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccc
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 98 (463)
-|.+.+|+|.+.++.+|+.+.|.++..++++++|+++||+|||++++.+.+++.++++++++++|++.++++|+++|+|.
T Consensus 29 ~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~ 108 (495)
T PRK14995 29 APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGA 108 (495)
T ss_pred HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHhhhcC-CCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCC
Q 012438 99 GFGNQSVPLYLSEMA-PPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPET 176 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~ 176 (463)
+...+.....+.+++ |+++|+++++++.....+|..+||.+++.+.+. .||||.|++....+++..++. +++||+
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~---~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 109 AMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH---FYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998888888887775 679999999999999999999999999888664 479999999888777765554 447776
Q ss_pred hHHHHhhCCcHHHHHH----------HHHHHh-CchhHHHHHH-------HHHHHhhcccccCCchh--hhhcccchhhH
Q 012438 177 PNSIIQRSNDHQKAQK----------MLQRVR-GIADVEAELN-------DLIRASSISKSITHPFK--NIAQRKYRPQL 236 (463)
Q Consensus 177 ~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 236 (463)
++... ++.|...... ..+... +......... ........+.+.+.+.. +++++ +.
T Consensus 186 ~~~~~-~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~----~~ 260 (495)
T PRK14995 186 AGRRD-QPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTH----RI 260 (495)
T ss_pred CCCCC-CCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCC----cc
Confidence 53211 1111111100 000000 0000000000 00000001111122222 22322 22
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHH
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQ 315 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 315 (463)
+....+..+...........+.|.+++. .|.++.+++ ....+..++..++.++.|++.||+|+|+.+..+..+..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~ 339 (495)
T PRK14995 261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAG-MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSF 339 (495)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 3333333333334455666788888876 577777766 88888899999999999999999999988877776666655
Q ss_pred HHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhh
Q 012438 316 VMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFL 395 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 395 (463)
..+.... .....+.......+.+.+.+....+.. ....+..|++.++.+.++.++..++|+.+++.+.+
T Consensus 340 ~~l~~~~----------~~~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g 408 (495)
T PRK14995 340 YGLAMTD----------FSTQQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFG 408 (495)
T ss_pred HHHHHhc----------CCCchHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5443321 011223333444555555554433333 33457789999999999999999999999999998
Q ss_pred hhhhc
Q 012438 396 PMLCH 400 (463)
Q Consensus 396 ~~~~~ 400 (463)
.+.+.
T Consensus 409 ~i~~~ 413 (495)
T PRK14995 409 LLLSR 413 (495)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=249.22 Aligned_cols=337 Identities=14% Similarity=0.132 Sum_probs=236.8
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhh---h-----hhhhHHHHHHHHHH
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALG---G-----SAFNIYMLIFGRLL 93 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~-----~~~~~~~l~~~r~l 93 (463)
+++|+|.|..+.|++.+.+.+++.+++++.|+++||+|||++++.+.+...++.+.. + ..++++.+++.|++
T Consensus 42 l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 121 (392)
T PRK12382 42 VHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLI 121 (392)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999988877665432 2 23688999999999
Q ss_pred hhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcC
Q 012438 94 LGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFL 173 (463)
Q Consensus 94 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 173 (463)
+|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+. .|||+.+.+..+..++........
T Consensus 122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 198 (392)
T PRK12382 122 LGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH---FGFAALALTTMVLPLLAWAFNGTV 198 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998898999999999999999999999999999999999998776543 479988776655544433332223
Q ss_pred CCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhH
Q 012438 174 PETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINI 253 (463)
Q Consensus 174 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (463)
||.++. +++ +.+.++..+....+. .. .+........
T Consensus 199 ~~~~~~---~~~-----------------------------------~~~~~~~~~~~~~~~-~~-----~~l~~~~~~~ 234 (392)
T PRK12382 199 RKVPAH---AGE-----------------------------------RPSLWSVVGLIWKPG-LG-----LALQGVGFAV 234 (392)
T ss_pred cCCCCC---ccc-----------------------------------CchHHHHHHHHHHhH-HH-----HHHHHHHHhH
Confidence 433210 000 001111111111111 11 1111123334
Q ss_pred HHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCc
Q 012438 254 VGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFS 333 (463)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (463)
...+.+.++++.+.+. .. .......++.+++.++.+++.||+++|+.+..+..+..++.+++...
T Consensus 235 ~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------------ 299 (392)
T PRK12382 235 IGTFVSLYFASKGWAM--AG-FTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA------------ 299 (392)
T ss_pred HHHHHHHHHHhcCCch--hH-HHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc------------
Confidence 5566777777766543 23 44556677788899999999999999999888877777665544332
Q ss_pred chhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHH
Q 012438 334 EGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLV 413 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (463)
++.+.......+.+.+.+.. .+.......|..|++.|+++.|+.+....+|..++|.+.+.+.|+.++...+...+.+
T Consensus 300 -~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~ 377 (392)
T PRK12382 300 -PTAWVALAGAALTGAGCSLI-FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAIS 377 (392)
T ss_pred -ccHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 22333333444444444332 2334445568889999999999999999999999999999999998876666655555
Q ss_pred HHHHHHHHH
Q 012438 414 LIMTTFMHF 422 (463)
Q Consensus 414 ~~~~~~~~~ 422 (463)
.+++.+...
T Consensus 378 ~~~~~~~~~ 386 (392)
T PRK12382 378 AVLGIIVTI 386 (392)
T ss_pred HHHHHHHHH
Confidence 555444443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=251.84 Aligned_cols=351 Identities=11% Similarity=0.005 Sum_probs=247.4
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+++++++|+|..+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+
T Consensus 31 ~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g 110 (394)
T PRK03699 31 GPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSG 110 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNS 179 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~ 179 (463)
...+....++.|++|+++|++.++..+....+|..++|.+...+... ..+||+.|.+.+++.++..+..++ .+.|+.
T Consensus 111 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~ 187 (394)
T PRK03699 111 ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR--SIEWYWVYACIGLVYVAIFILTLF-SEFPAL 187 (394)
T ss_pred hhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHh-cCCccc
Confidence 99999999999999999999999999888899988888876554321 248999999888877665554433 222210
Q ss_pred HHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHH
Q 012438 180 IIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSP 259 (463)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++++ . + +.+...+ ... ++.++...+..++.....+.+..|.|
T Consensus 188 --~~~~-~-~-----------------------------~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p 229 (394)
T PRK03699 188 --GKHA-P-K-----------------------------ADKPVAK----EKW-GIGVLFLAIAALLYILAQLTFISWVP 229 (394)
T ss_pred --cccC-c-c-----------------------------ccCcccc----ccC-ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0 0000000 111 12233333444444445566778999
Q ss_pred HHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHH
Q 012438 260 VLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAY 338 (463)
Q Consensus 260 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
.++++ .+.+..+.+ .......++..++.++.++++||+++|+.+.....+..+...++... ++.+
T Consensus 230 ~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~ 295 (394)
T PRK03699 230 EYAQKKFGMSLEDAG-NLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT-------------DDPS 295 (394)
T ss_pred HHHHHHcCCChHHhh-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc-------------CCch
Confidence 99854 677777766 77778888899999999999999999988876665554443333221 1122
Q ss_pred HHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHH
Q 012438 339 LILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTT 418 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (463)
.........+.+.+.. .+....+..|..| +.++...+......++|..++|.+.|.+.+..++...+....++.+++.
T Consensus 296 ~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (394)
T PRK03699 296 HLLYAILGLGFFSSAI-YTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF 373 (394)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH
Confidence 2222333333332222 2333444456655 4567788899999999999999999999998886655544444444444
Q ss_pred HHHHhcCCC
Q 012438 419 FMHFFLPET 427 (463)
Q Consensus 419 ~~~~~~~~~ 427 (463)
+.....++.
T Consensus 374 ~~~~~~~~~ 382 (394)
T PRK03699 374 VMCILLGFV 382 (394)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=253.05 Aligned_cols=361 Identities=17% Similarity=0.170 Sum_probs=263.1
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh--hHHHHHHHHHHhhccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF--NIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 100 (463)
+.++++|+.+.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++...+. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 568999999999999999999999999999999999999999999999999999999884 556889999999999999
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCChHH
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETPNS 179 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~~~ 179 (463)
.+|+...+.++|.|++||++..++...+..+|.+++.++++.+-+. ..||+.+|++.++.+++..+++++ ..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999999999999999988877655 258999999999999998888865 6777753
Q ss_pred HHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhc---ccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHh
Q 012438 180 IIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSI---SKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGL 256 (463)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
...- . .+| .+..++.+.+ +++.+.|++++++. +.++.+.+..+....+++.+..
T Consensus 223 h~~i-s-~~E-----------------l~~I~~~k~~~~~~~~~~vP~~~i~ts----~~vwai~~~~f~~~~~~~~l~~ 279 (466)
T KOG2532|consen 223 HPNI-S-EKE-----------------LKYIEKGKSEAHVKKKPPVPYKAILTS----PPVWAIWISAFGGNWGFYLLLT 279 (466)
T ss_pred CCCC-C-HHH-----------------HHHHHhcccccccCCCCCCCHHHHHcC----HHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1 111 1111111111 11135677777654 4577788888888889999999
Q ss_pred hHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--------hh-hhHhhHHHHHHHHHHHHHHHhhh
Q 012438 257 YSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRK--------VL-FLVGGIQMLVSQVMIGSIMAAQL 326 (463)
Q Consensus 257 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~ 326 (463)
|.|.|+++ ++++..+.+ +..++..+...+..+++|.++||+.+| |. -.++....++.++.+.+.
T Consensus 280 y~PtY~~~VL~f~v~~~G-~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~----- 353 (466)
T KOG2532|consen 280 YLPTYLKEVLGFDVRETG-FLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT----- 353 (466)
T ss_pred HhhHHHHHHhCCChhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec-----
Confidence 99999987 566766666 999999999999999999999998663 11 123333333333333332
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc---cc
Q 012438 327 GDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF---KA 403 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~---~~ 403 (463)
+....+..++++.+.....+....... .-..+. .+++.+..+|+.+....+.++++|.+.+.+.... .|
T Consensus 354 ------~~~~~~~a~~~l~~~~~~~g~~~~Gf~-~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW 425 (466)
T KOG2532|consen 354 ------SDEHRLLAVILLTIAIGLSGFNISGFY-KNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEW 425 (466)
T ss_pred ------CCCcchHHHHHHHHHHHHcccchhhhH-hhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHH
Confidence 111222233332222222222111111 111222 4589999999999999999999999999998422 35
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 012438 404 GIFFFFGGLVLIMTTFMHF 422 (463)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~ 422 (463)
...++..++..+++.+.+.
T Consensus 426 ~~VF~i~a~i~~~~~i~f~ 444 (466)
T KOG2532|consen 426 RIVFLIAAGILIVGNIIFL 444 (466)
T ss_pred HHHHHHHHHHHHHhchhee
Confidence 5555544444444444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=252.33 Aligned_cols=356 Identities=20% Similarity=0.225 Sum_probs=248.4
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.++..++++++.+++.|++.|++.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 120 (398)
T TIGR00895 41 PAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLG 120 (398)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHH-hhcCCCChH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIG-AIFLPETPN 178 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~~~e~~~ 178 (463)
...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+. .|||+.|++.++..++..+. ..++||+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 121 GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV---FGWRSLFYVGGIAPLLLLLLLMRFLPESID 197 (398)
T ss_pred cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc---ccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence 99999999999999999999999999999999999999998766543 57999999887655554444 455888876
Q ss_pred HHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhH
Q 012438 179 SIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYS 258 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
+..++ + +++.++..++.......+.+ ++..+++..++..+...+..++.+..+.. ..+....+...........+.
T Consensus 198 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 273 (398)
T TIGR00895 198 FLVSK-R-PETVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKALFQGKTARIT-VLLWLLYFMLLVGVYFLTNWL 273 (398)
T ss_pred HHHhc-C-HHHHHHHHHHHHHhcccccc-ccccccccccchhhHHHHHHhcchhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 55443 2 22222222222111000000 00000000000011112222222222222 223333334444556677788
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHH
Q 012438 259 PVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAY 338 (463)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
|.+.++.+.+..... .......++.+++.++.+++.||++||+... ...+..+...++.... .+.+
T Consensus 274 ~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~ 339 (398)
T TIGR00895 274 PKLMVELGFSLSLAA-TGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTL------------FSPT 339 (398)
T ss_pred HHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHh------------hCHH
Confidence 888888888877766 7788888999999999999999999984433 3333333332222211 1223
Q ss_pred HHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhh
Q 012438 339 LILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPM 397 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 397 (463)
......++.+.+.+.. .+....+..|.+|++.|+++.|+.+....+|..++|.+.|.+
T Consensus 340 ~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 340 LLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 3333444444444333 345567778999999999999999999999999999998865
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=261.03 Aligned_cols=357 Identities=13% Similarity=0.111 Sum_probs=239.1
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHH-HHHHhhccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIF-GRLLLGVGI 98 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~r~l~G~~~ 98 (463)
+.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .|+++|++.
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~ 122 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGL 122 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc
Confidence 3457788999999999999999999999999999999999999999999999999999999999998875 579999999
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcC-CCCh
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFL-PETP 177 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~-~e~~ 177 (463)
+...+....++.++++ ++|+++.++.+.+..+|..+++.+++.+.+. +|||+.|++.+++.++..+..+++ ++.+
T Consensus 123 ~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~---~gwr~~f~~~~~~~~~~~v~~~~~~~~~~ 198 (455)
T TIGR00892 123 AFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES---FGWRGSFLILGGLLLHCCVCGALMRPVGP 198 (455)
T ss_pred hhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9877788888999996 7899999999999999999999987766553 479999999998877665554443 3222
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCch--hhhhcccchhhHHHHHHHHHHHhhhhhhHHH
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPF--KNIAQRKYRPQLVMAILIPFFQQVTGINIVG 255 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (463)
.....+.+ .++ .....+..++ ... ....+...+. .+.++ ++.++......+..........
T Consensus 199 ~~~~~~~~-~~~------~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ 261 (455)
T TIGR00892 199 SQRVSKSK-SKE------GLPPDGSTKK----LSK--KSTAEKINRFLDFSLFT----HRGFLVYLSGNVIMFLGFFAPI 261 (455)
T ss_pred cccccccc-ccc------cCCCCCcccc----ccc--cchhhhhhhhcchHHhc----CchHHHHHHHHHHHHHHccchH
Confidence 11000000 000 0000000000 000 0000000011 11222 2223333333333334455566
Q ss_pred hhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc--CCchhhhHhhHHH--HHHHHHHHHHHHhhhCCCCC
Q 012438 256 LYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKF--GRKVLFLVGGIQM--LVSQVMIGSIMAAQLGDHGG 331 (463)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 331 (463)
.+.|.+.++.+.+....+ ......+++.+++.++.+++.||. ++|+...+..... +++.+.....
T Consensus 262 ~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---------- 330 (455)
T TIGR00892 262 IFLVPYAKDKGVDEYEAA-FLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA---------- 330 (455)
T ss_pred HHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 778888888888877766 777888889999999999999973 3333333322222 2222221111
Q ss_pred CcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc-chhHHHHH
Q 012438 332 FSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK-AGIFFFFG 410 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 410 (463)
++.+..++...+.+.+.+.. .+....++.|.+|++.++++.|+.+....+|..++|.+.|.+.+..+ +...+...
T Consensus 331 ---~~~~~~~i~~~~~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~ 406 (455)
T TIGR00892 331 ---GDYTGLVIYCIFFGLSFGSV-GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYAS 406 (455)
T ss_pred ---chHHHHHHHHHHHHHHhchH-HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHh
Confidence 22333344444444444333 34555666789999999999999999999999999999999998774 54433333
Q ss_pred HH
Q 012438 411 GL 412 (463)
Q Consensus 411 ~~ 412 (463)
++
T Consensus 407 ~~ 408 (455)
T TIGR00892 407 GS 408 (455)
T ss_pred hH
Confidence 33
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=249.73 Aligned_cols=348 Identities=12% Similarity=0.161 Sum_probs=235.8
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccc
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 98 (463)
-.++++.+|++++..|++.+.+.+.+.+.+|+.|+++|||.||+++.+|..+|.++.++++++..||+++++|.+.|+|.
T Consensus 56 ~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGe 135 (493)
T KOG1330|consen 56 LKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGE 135 (493)
T ss_pred hHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCCh
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETP 177 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~ 177 (463)
+.+.|.++.+++|.+|.++|++++++++.+..+|..+|.+.+..+..... .|||.|+..+++++++.++.++ .+|++
T Consensus 136 As~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 136 ASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred hhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 99999999999999999999999999999999999999999988877664 3999999999999998877755 66655
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+...++.++ +.+..+.....++|+.... +.+.+....+...........+..|
T Consensus 214 rga~~~~~~--------------------------~~~~~~~~ts~~kDl~~l~-~~~v~v~~sl~~~a~~fv~Gs~sww 266 (493)
T KOG1330|consen 214 RGARDEVDG--------------------------ENKMVKPFTSVWKDLKVLA-KIKVFVLSSLGIIAAQFVIGSLSWW 266 (493)
T ss_pred ccccccccc--------------------------CCcCCCCccchHHHHHHHH-ccCceeeehHHHHHHHHhccccchh
Confidence 321111110 0000111122233332211 1111222222222222233445556
Q ss_pred HHHHH----HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCc----hhhhHhhHHHHHHHHHHHHHHHhhhCCC
Q 012438 258 SPVLF----RTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRK----VLFLVGGIQMLVSQVMIGSIMAAQLGDH 329 (463)
Q Consensus 258 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (463)
.|.+. +-.+.+.+... ++..+...++.+|.+++|.++||+.|+ ......-...+.+......++.....
T Consensus 267 ~p~~~~~~~~~~~~~~~~~~-ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~-- 343 (493)
T KOG1330|consen 267 APAFIYYSYELIGFDHNATL-IFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA-- 343 (493)
T ss_pred hhhHHHHHHHHhCCccccch-hhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh--
Confidence 55554 33455655555 778888889999999999999995321 11222222221111111111111000
Q ss_pred CCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHH-HHHHhhhhhhhhcc
Q 012438 330 GGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFT-FLTAQTFLPMLCHF 401 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~~~~~~~~ 401 (463)
......+..++++.+........+.+....+ .|++|++.|.++.++...+..+.+ +-+|++.|.+.|+.
T Consensus 344 --~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~-l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 344 --FTSSSMIFGLILFLVGETISWFNWATNNPIF-LEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred --hhhHHHHHHHHHHHHHHHHHhccccccccee-eEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 0112233333333332233333444444444 699999999999999988876544 44455888888764
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=256.44 Aligned_cols=369 Identities=16% Similarity=0.085 Sum_probs=246.5
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh--hhHHHHHHHHHHhhcccccc
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA--FNIYMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~ 101 (463)
.|++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+..
T Consensus 69 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 69 PNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV 148 (465)
T ss_pred CCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence 3789999999999999999999999999999999999999999999999999887654 56888999999999999999
Q ss_pred cchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCChHHH
Q 012438 102 NQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETPNSI 180 (463)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~~~~ 180 (463)
.+....++.||+|+++|++++++...+..+|.+++++++..+.+.. .|||+.|++.++++++..+.+++ .+|+|+..
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~ 226 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH 226 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHHHHHHHHHhcCCcccC
Confidence 9999999999999999999999999999999999999987765431 27999999999988877766655 56666421
Q ss_pred HhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHH
Q 012438 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPV 260 (463)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
.. .+++| ++..+ +..++++.+++.+.+++++++ ++.++...+..+......+.+..|+|.
T Consensus 227 ~~--~~~~~-~~~i~-------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lp~ 286 (465)
T TIGR00894 227 PC--ISKFE-KKYIN-------------SSLQGQKGSTRQSLPIKAIPK----SLPVWAIWFAIFGHFWLYTILPTYLPT 286 (465)
T ss_pred CC--CCHHH-HHHHH-------------hhcccccCCCCCCCCHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 10111 11000 000000001111223444433 334555556666666677788889999
Q ss_pred HHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhH---hhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 261 LFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLV---GGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 261 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
++++ .+.+....+ ....+..++.+++.++.|+++||+++|+.... ......++............. ....
T Consensus 287 ~l~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 360 (465)
T TIGR00894 287 FISWVLRVSGKENG-LLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY-----LSAA 360 (465)
T ss_pred HHHHHhCcChHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCc
Confidence 8865 677776666 77788889999999999999999765432210 011111111110000000000 0011
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc--c-chhHHHHHHHH
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF--K-AGIFFFFGGLV 413 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--~-~~~~~~~~~~~ 413 (463)
.+..+..+.+.+.+.+.. .+..+....|..| +.+|.+.|+.+..+.+++.++|.+.|.+.+.. + +...+.+.++.
T Consensus 361 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~ 438 (465)
T TIGR00894 361 FYLTIIILTLANAVSSGP-LAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFV 438 (465)
T ss_pred hHHHHHHHHHHHHHhhhh-hhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHH
Confidence 222233333333322222 2233344456666 58999999999999999999999999888754 2 33333333333
Q ss_pred HHHHHHHHH
Q 012438 414 LIMTTFMHF 422 (463)
Q Consensus 414 ~~~~~~~~~ 422 (463)
.+++.+...
T Consensus 439 ~~i~~i~~~ 447 (465)
T TIGR00894 439 NILCVIFYL 447 (465)
T ss_pred HHHHHHHee
Confidence 444444333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=255.40 Aligned_cols=355 Identities=13% Similarity=0.075 Sum_probs=240.0
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+.+++++|++..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+
T Consensus 19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (379)
T TIGR00881 19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQG 98 (379)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHH-HhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCCh
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSAN-LLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETP 177 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~ 177 (463)
...+...+++.|++|+++|++++++.+.+..+|..+++ .++..+... .+||+.|++.+++.++..+.. ++.||+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 99 MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL---YSWHWVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence 99999999999999999999999999999999999999 455444432 479999998888777655544 4477765
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+....++.++++.+ +.+ + .++.+++.....+...+...+++.++...+..+...........+
T Consensus 176 ~~~~~~~~~~~~~~----------~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (379)
T TIGR00881 176 QSCGLPPAEEMPNE----------EPD----G---DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDW 238 (379)
T ss_pred cccccCccccCccc----------ccc----c---ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 42211111000000 000 0 000000000111111111122233333444444444455666778
Q ss_pred HHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 258 SPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 258 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
.|.++++ .+.+..+.. .......++.+++.++.+++.||..+|+...............+..... .+...
T Consensus 239 ~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 309 (379)
T TIGR00881 239 SPLYLTQEKGFSKEKAS-WAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL--------NPAAN 309 (379)
T ss_pred HHHHHHHHhCCCHHHHH-HHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc--------Ccchh
Confidence 8888754 577766666 7778888899999999999999864333222222211111111111100 00111
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccch
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAG 404 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 404 (463)
.+.........+.. ..+..+....+.+|.+|++.|+++.|+.+....+|+.++|.+.|.+.|..++.
T Consensus 310 ~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 310 PLMDLICLFALGFL-VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred HHHHHHHHHHHHHH-HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 22222222222222 22222334456689999999999999999999999999999999999987754
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=240.81 Aligned_cols=347 Identities=15% Similarity=0.039 Sum_probs=240.2
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHhhccc
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA-----FNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~ 98 (463)
+|+|+|.+|.+++.+++.+++.++.++.|++.||+|+|+++.++.+++++.+++.+++ +|++.+++.|++.|++
T Consensus 63 ~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig- 141 (462)
T PRK15034 63 IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA- 141 (462)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-
Confidence 3789999999999999999999999999999999999999999999999999999987 8999999999999997
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhc-----c----------cCCcchhHHHHHhhHHHH
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQ-----K----------IKGGWGWRISLAMAAAPA 163 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~-----~----------~~~~~gwr~~f~~~~~~~ 163 (463)
+..++.....+++|+|+++||+++++.....++|..+++++...+. . ..+..+||...++.+++.
T Consensus 142 g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~ 221 (462)
T PRK15034 142 GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLL 221 (462)
T ss_pred HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence 7788999999999999999999999997666666665554432211 0 112346999998888888
Q ss_pred HHHHHHhhcC-CCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHH
Q 012438 164 SILTIGAIFL-PETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILI 242 (463)
Q Consensus 164 ~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (463)
++..++.++. ++.|+ + +.+.++..+.. +++..|.+.+
T Consensus 222 iv~~i~~~~~~~~~~~----~-------------------------------------~~~~~~~~~vl-k~~~~Wllsl 259 (462)
T PRK15034 222 AIATIAAWSGMNDIAS----S-------------------------------------RASIADQLPVL-QRLHLWLLSL 259 (462)
T ss_pred HHHHHHHHHhCCCccc----c-------------------------------------ccCHHHHHHHh-CCCchhHHHH
Confidence 7777666654 33321 0 00111111111 1222344555
Q ss_pred HHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHH
Q 012438 243 PFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIM 322 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 322 (463)
.+++.+.++..+..++|++.++.. +..... ....+..+...+..+++|+++||+|+|+.+.++.+.+.++...+....
T Consensus 260 ly~~tFG~fvg~s~~lp~~~~~~~-~~~~~l-~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l 337 (462)
T PRK15034 260 LYLATFGSFIGFSAGFAMLAKTQF-PDVNIL-RLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL 337 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-ChHHHH-HHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 556666777888889999987632 222222 334455677888999999999999999999988887777665443332
Q ss_pred HhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCc---------------------ccccchhHHHHH
Q 012438 323 AAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPL---------------------EIRSAGQSITVA 381 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~~~~~~g~~~~ 381 (463)
. ..+..+.+.....+.......+.+..++. -++.+.+|+ ++.|.+.|+...
T Consensus 338 p-------~~~~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a 409 (462)
T PRK15034 338 P-------GTGSGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISA 409 (462)
T ss_pred c-------cccccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHH
Confidence 0 00112233333333333333344433333 233466663 156789999999
Q ss_pred HHHHHHHHHHhhhhhhhhccc-ch-hHHHHHHHHHHHHHHHHHh
Q 012438 382 VNFLFTFLTAQTFLPMLCHFK-AG-IFFFFGGLVLIMTTFMHFF 423 (463)
Q Consensus 382 ~~~~g~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 423 (463)
.+.+|+++.|.+++...+..+ +. .++.+.+..+++.++.+.+
T Consensus 410 ~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 410 IGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988876 33 3444444444444444433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=250.97 Aligned_cols=373 Identities=16% Similarity=0.051 Sum_probs=241.4
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh----hhHHHHHHHHHHhhcccccc
Q 012438 26 CKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA----FNIYMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 26 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~~~~ 101 (463)
.|++.++.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.+++++. ++++.+.+.|++.|++.+..
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~ 135 (438)
T TIGR00712 56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG 135 (438)
T ss_pred cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence 48999999999999999999999999999999999999999999999998887764 46788889999999999999
Q ss_pred cchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCChHHH
Q 012438 102 NQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETPNSI 180 (463)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~~~ 180 (463)
++.....+.|++|+++|++++++.+.+..+|..+++.+....... ..+||+.|++.++++++..+.. +++||+|+..
T Consensus 136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~ 213 (438)
T TIGR00712 136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--FNDWHAALYFPAICAIIVALFAFAMMRDTPQSC 213 (438)
T ss_pred hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhc
Confidence 999999999999999999999999999999999888765433221 1479999999888887765544 4478877532
Q ss_pred HhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhh-cccchhhHHHHHHHHHHHhhhhhhHHHhhHH
Q 012438 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIA-QRKYRPQLVMAILIPFFQQVTGINIVGLYSP 259 (463)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
..++ .++.+. + ..+ .. . + +++.+.+.++.. +...+++.++...+..++.....+.+..|.|
T Consensus 214 ~~~~--~~~~~~---~---~~~---~~---~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 275 (438)
T TIGR00712 214 GLPP--IEEYRN---D---YPD---DY---N---E-KAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSP 275 (438)
T ss_pred CCCC--chhccc---c---ccc---cc---c---c-ccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1110 000000 0 000 00 0 0 000001111111 1112223333333333333344556778899
Q ss_pred HHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHH
Q 012438 260 VLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAY 338 (463)
Q Consensus 260 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
.++++ .+.+..... ....+..+..+++.++.|+++||+++++....+.....+......... . . +..+.+
T Consensus 276 ~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-----~~~~~~ 346 (438)
T TIGR00712 276 TYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-M--N-----PAGNPL 346 (438)
T ss_pred HHHHHccCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-h--c-----CCCchH
Confidence 99876 476776666 777788888999999999999999654332223222222111111110 0 0 001112
Q ss_pred HHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHH-HHHHhhhhhhhhcccchhHH-HHHHHHHHH
Q 012438 339 LILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFT-FLTAQTFLPMLCHFKAGIFF-FFGGLVLIM 416 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (463)
.........+.+. .+..........|.+|++.|+++.|+.+...++++ .++|.+.|.+.|+.++...+ +..++.++.
T Consensus 347 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~ 425 (438)
T TIGR00712 347 VDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA 425 (438)
T ss_pred HHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHH
Confidence 2222222222211 11111112345689999999999999999988875 68999999999988855444 444445555
Q ss_pred HHHHHHhcCCCC
Q 012438 417 TTFMHFFLPETK 428 (463)
Q Consensus 417 ~~~~~~~~~~~~ 428 (463)
.+...+..+|+|
T Consensus 426 ~~~~~~~~~~~~ 437 (438)
T TIGR00712 426 VILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHhhcc
Confidence 555556666654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=246.53 Aligned_cols=351 Identities=13% Similarity=0.075 Sum_probs=246.9
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+.+.+++|.|..+.++..+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++.++++++.+++.|+++|++.+
T Consensus 37 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 116 (406)
T PRK15402 37 LAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLC 116 (406)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhh-cCCCChH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAI-FLPETPN 178 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~-~~~e~~~ 178 (463)
...+....++.|++|+++|.+..++......+|..++|.++..+.+. .+||+.|++.++..++..+..+ ..||+++
T Consensus 117 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 117 FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV---LPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 88889999999999999999999999888889999999988766553 4799999998888777666544 3677642
Q ss_pred HHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhH
Q 012438 179 SIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYS 258 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
... + ..+.+ + ...++++.++++ .++...+..+...........+.
T Consensus 194 ~~~---~-~~~~~-----------------~----------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 238 (406)
T PRK15402 194 RVG---E-KLSLK-----------------E----------LGRDYKLVLKNR----RFVAGALALGLVSLPLLAWIALS 238 (406)
T ss_pred ccc---c-cccHH-----------------H----------HHHHHHHHHcCc----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 110 0 00000 0 001122222222 12222222222222233444556
Q ss_pred HHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhH
Q 012438 259 PVLF-RTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYA 337 (463)
Q Consensus 259 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (463)
|.++ ++.+.++.+.+ .......++.+++.++.+++.||+++|+.+..+.....++...+...... .....
T Consensus 239 p~~~~~~~g~~~~~~g-~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~ 309 (406)
T PRK15402 239 PVILISGEQLSSYEYG-LLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--------SSHAY 309 (406)
T ss_pred HHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--------ccccH
Confidence 7665 44677766555 55556667888999999999999999998888777666666555443100 01122
Q ss_pred HHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHH
Q 012438 338 YLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMT 417 (463)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (463)
+.......+.+.+.+.... ...... ...+++.+|++.+..+....++..+++.+.+.+.+..+...+....+++.+..
T Consensus 310 ~~~~~~~~~~g~g~~~~~~-~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 310 LWLTAGLSLYAFGIGLANA-GLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHHhh-hHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 3333444444444443322 222232 23345899999999999999999999999999988877555544444444444
Q ss_pred HH
Q 012438 418 TF 419 (463)
Q Consensus 418 ~~ 419 (463)
+.
T Consensus 388 ~~ 389 (406)
T PRK15402 388 LL 389 (406)
T ss_pred HH
Confidence 33
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=241.75 Aligned_cols=346 Identities=13% Similarity=0.121 Sum_probs=239.1
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhh-HHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSIL-IGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
+++++|.|..+.|++.+.+.++..+.+++.|+++||+||||.++ .+..+..++.++++++++++.+++.|+++|.+.+.
T Consensus 24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 103 (375)
T TIGR00899 24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAST 103 (375)
T ss_pred HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhh
Confidence 46678999999999999999999999999999999999988765 45666677888899999999999999999988888
Q ss_pred ccchhhHHhhhcCCCCcccch--hhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCCh
Q 012438 101 GNQSVPLYLSEMAPPKYRGTF--NIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETP 177 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~ 177 (463)
..|...+++.|+.|+++|++. .+....+.++|..+++.+++.+.+. .|||+.|++.++..++..+..++ +||.|
T Consensus 104 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 104 ANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---FGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred hHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 888888899999887777654 5788888899999999998777543 47999999998887776665544 88876
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
++..++++ +.+.++.++++..+... ...+...........+
T Consensus 181 ~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 221 (375)
T TIGR00899 181 RGAPGALT-----------------------------------RLEVRGLLASRDTRLLF----VACTLMWGCNILYIIN 221 (375)
T ss_pred cCcccccC-----------------------------------cchhhhhhcCcchHHHH----HHHHHHHHHHHHHHhh
Confidence 32110000 00111122222111111 1111112222334455
Q ss_pred HHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 258 SPVLF-RTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 258 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
.|.++ ++.+.++...+ ..........+++.++.+++.||++||+.+..+.....+....+... ++
T Consensus 222 ~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~ 287 (375)
T TIGR00899 222 MPLLIIHELGLPDKLAG-LMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------------NS 287 (375)
T ss_pred hHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------------HH
Confidence 66666 45677766665 56666666778888999999999999998877665544433332221 22
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHH
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM 416 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (463)
.+.......+.+.+.+.. .+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..++...+...+++.+.
T Consensus 288 ~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~ 365 (375)
T TIGR00899 288 LWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIV 365 (375)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 333333333333333322 24455566788775 5679999999999999999999999999988876666666665555
Q ss_pred HHHHHHhcC
Q 012438 417 TTFMHFFLP 425 (463)
Q Consensus 417 ~~~~~~~~~ 425 (463)
+.+...+++
T Consensus 366 ~~~~~~~~~ 374 (375)
T TIGR00899 366 ALFCLLLIK 374 (375)
T ss_pred HHHHHheec
Confidence 555555443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=248.09 Aligned_cols=331 Identities=14% Similarity=0.027 Sum_probs=242.6
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh-----hHHHHHHHHHHhhcc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF-----NIYMLIFGRLLLGVG 97 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-----~~~~l~~~r~l~G~~ 97 (463)
..+++.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.++..+.+ +++.+++.|+++|++
T Consensus 26 ~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 105 (365)
T TIGR00900 26 VLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIA 105 (365)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 344577999999999999999999999999999999999999999999999999888887 999999999999999
Q ss_pred cccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcC--CC
Q 012438 98 IGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFL--PE 175 (463)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~--~e 175 (463)
.+...+...+++.|++|+++|++.+++.+.+..+|.++++.+++.+.+. .|||+.|++.++..++..+..+++ ||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (365)
T TIGR00900 106 QAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT---LGIKWAIWVDAVGFAISALLIVSVRIPE 182 (365)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999998877553 479999998887766655544433 33
Q ss_pred ChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHH
Q 012438 176 TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVG 255 (463)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (463)
+++. ++++.++ +. .++ .++.++..++++. ++......+..........
T Consensus 183 ~~~~---~~~~~~~--~~-------------~~~----------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 230 (365)
T TIGR00900 183 LAAS---EIQALSN--AV-------------LRD----------TREGIKFVLKNPL----LRTLLLLALLFNLVFAPAI 230 (365)
T ss_pred CCCc---cccccch--hH-------------HHH----------HHhHHHHHHcCcH----HHHHHHHHHHHHHHHHHHH
Confidence 2210 0000000 00 000 0112233333222 2222222222222333333
Q ss_pred -hhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCc
Q 012438 256 -LYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFS 333 (463)
Q Consensus 256 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (463)
.+.|.+.++ .+.+..+.+ .......++.+++.++.+++.||.+||+.+..+..+..++...+... +
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 298 (365)
T TIGR00900 231 VALFPYVQSKYLGRGSTHYG-WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-----------P 298 (365)
T ss_pred HHHhHHHHHHHhCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-----------c
Confidence 677888876 677766666 77888889999999999999999999998887766665555544432 1
Q ss_pred chhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc
Q 012438 334 EGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK 402 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 402 (463)
++.+...+...+.+.+.+.. .+....+..|..|++.|+++.|+.+...+++..++|.+.|.+.|..|
T Consensus 299 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 299 -PNFPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred -hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12334444444555444433 34556667899999999999999999999999999999999988653
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=243.00 Aligned_cols=341 Identities=20% Similarity=0.230 Sum_probs=234.7
Q ss_pred cCchhHHHHHHH-----HHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHH--------HHHHHHHHh
Q 012438 28 FDSQLLTTFTSS-----LYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIY--------MLIFGRLLL 94 (463)
Q Consensus 28 ~s~~~~~~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~ 94 (463)
.++.+.+.+.+. .+++..+++++.|+++||+|||+++..+.++..++.++++++++++ .+++.|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 445566554443 3344457899999999999999999999999999999999998875 488899999
Q ss_pred hcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC-----CcchhHHHHHhhHHHHHHHHHH
Q 012438 95 GVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK-----GGWGWRISLAMAAAPASILTIG 169 (463)
Q Consensus 95 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----~~~gwr~~f~~~~~~~~~~~~~ 169 (463)
|++.+...+....++.|++|+++|++..+..+.+..+|.++++.++..+.... +..+||+.|++.++..++..+.
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876554311 2368999999888777666555
Q ss_pred hhcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhh
Q 012438 170 AIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVT 249 (463)
Q Consensus 170 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (463)
....||+|++..++++ +++.+.+.++.++++. ++ ++......+....
T Consensus 187 ~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 233 (394)
T TIGR00883 187 RRNLEETPVFEKAQEK-------------------------------HKKKRGPIRETLTKHR-KP-FLLGLGLVIATTT 233 (394)
T ss_pred HHhcCCChhHHHHHhc-------------------------------cccccCCHHHHHHhch-HH-HHHHHHHHHHHHH
Confidence 5557777643211100 0111223344433322 11 2223333333334
Q ss_pred hhhHHHhhHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCC
Q 012438 250 GINIVGLYSPVLF-RTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGD 328 (463)
Q Consensus 250 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (463)
.......+.|.+. ++.+.+..... .......+...++.++.+++.||+|||+.+.....+..+....+.....
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~----- 307 (394)
T TIGR00883 234 TFYLITTYLPTYLTQTLGLSANSAL-LVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL----- 307 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 5556677888888 45677766666 6777888899999999999999999999776555444333222111110
Q ss_pred CCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHH-HHHHHHHHHHHhhhhhhhhccc-chhH
Q 012438 329 HGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITV-AVNFLFTFLTAQTFLPMLCHFK-AGIF 406 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~-~~~~ 406 (463)
.....+.......+.+.+.+.. .+....+..|.+|++.|+++.++.+ ....+|..++|.+.|.+.++.+ +...
T Consensus 308 ----~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~ 382 (394)
T TIGR00883 308 ----DSGSFTLFFFLVLGLALIGGMY-TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAI 382 (394)
T ss_pred ----cCCchHHHHHHHHHHHHHHHHH-hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhH
Confidence 0112333333334444433333 3445667789999999999999854 4456888899999999999887 4444
Q ss_pred HHHHHH
Q 012438 407 FFFGGL 412 (463)
Q Consensus 407 ~~~~~~ 412 (463)
.....+
T Consensus 383 ~~~~~~ 388 (394)
T TIGR00883 383 GYYLAA 388 (394)
T ss_pred HHHHHH
Confidence 444443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=245.98 Aligned_cols=327 Identities=21% Similarity=0.309 Sum_probs=237.6
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..++++++.+++.|++.|++.+.
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 101 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGF 101 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccc
Confidence 45677899999999999999999999999999999999999999999999999977777778888999999999999999
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCChHH
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETPNS 179 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~~ 179 (463)
..+....++.|++|+++|++++++...+.++|.++++.+++.+.+. .+||+.|++.++..++..++. .+++++|+.
T Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~ 178 (352)
T PF07690_consen 102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY---FGWRWAFLISAILSLIAAILFILFLPEPPPP 178 (352)
T ss_dssp HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---CHHCCHHHHHHHHHHHHHHHHHCCC---STT
T ss_pred ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc---cccccccccccchhhhhhhhHhhhhhhcccc
Confidence 9999999999999999999999999999999999999998877643 579999999999988887753 345444322
Q ss_pred HHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCC-chhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhH
Q 012438 180 IIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITH-PFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYS 258 (463)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
...+++++++ ++.++... .++..+++ +.++......+...........+.
T Consensus 179 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 229 (352)
T PF07690_consen 179 RERESPKESE-------------------------SKKPKPLKPGFKSLFKN----PVLWILLIAFFLFFFVFSGFSFFL 229 (352)
T ss_dssp TT--SSTTTT---------------------------HHHCCCH-CTHHHHH----HCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccc-------------------------ccccccccccccccccc----chhhhhhhhhhHHHHHHHHhhccc
Confidence 1111110000 00000011 13333322 222223333333334555677888
Q ss_pred HHH-HHHcCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 259 PVL-FRTLKLG-ESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 259 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
|.+ .+..+.+ ....+ .......+..+++.++.+++.||+++|+..........+....+..... ..+
T Consensus 230 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 298 (352)
T PF07690_consen 230 PLYLQEVLGFSGPSQAG-LLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF----------SSS 298 (352)
T ss_dssp HHHCCHHHHCCTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH----------HCH
T ss_pred chhhhhccCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH----------hhh
Confidence 887 5667777 44555 7788888888999999999999999988777766666655555443311 112
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHH
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTA 391 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 391 (463)
.........+.+.+.+.. .+....+..|..|++.++++.|+.+...++++.++|
T Consensus 299 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 299 PVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 233333444444444433 456667778999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=245.91 Aligned_cols=360 Identities=13% Similarity=0.114 Sum_probs=247.5
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+++.++++++.+++.|+++|++.+
T Consensus 34 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~ 113 (471)
T PRK10504 34 PSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGA 113 (471)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCChH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETPN 178 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~~ 178 (463)
...+....++.|++|+++|+++.++.....++|..+++.+++.+.+. .|||+.|++..+..++..+.... .|+.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~ 190 (471)
T PRK10504 114 MMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY---ASWHWIFLINIPVGIIGAIATLMLMPNYTM 190 (471)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999999998877653 47999999988777666555544 454432
Q ss_pred HHHhhCCcHHHHHHHHHH---------HhCchh---HHHHHH-----------HHHHHhhcccccCCchhhhhcccchhh
Q 012438 179 SIIQRSNDHQKAQKMLQR---------VRGIAD---VEAELN-----------DLIRASSISKSITHPFKNIAQRKYRPQ 235 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (463)
. +.+ .+........ ..+.+. ...... ....++...++...+. ++++++
T Consensus 191 ~---~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~---- 261 (471)
T PRK10504 191 Q---TRR-FDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTR---- 261 (471)
T ss_pred c---CCC-CChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhccc----
Confidence 1 111 1111100000 000000 000000 0000011111111112 222222
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHH
Q 012438 236 LVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVS 314 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 314 (463)
.+.......++..........+.|++++. .+.++...+ +......++.+++.++.+++.||+|||+.+..+..+..+.
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG-LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALV 340 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 22333333333334455566778888875 676666666 7777777888888899999999999999988887777666
Q ss_pred HHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhh
Q 012438 315 QVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTF 394 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 394 (463)
..++.... ...+.+.......+.+.+.+.... ....+..+..|++.++.+.|+.++...+|..+++.+.
T Consensus 341 ~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 409 (471)
T PRK10504 341 SLLFMLVA----------LLGWYYLLPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA 409 (471)
T ss_pred HHHHHhcc----------ccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 55544320 011122222223333333333322 3345556888999999999999999999999999999
Q ss_pred hhhhhcccc
Q 012438 395 LPMLCHFKA 403 (463)
Q Consensus 395 ~~~~~~~~~ 403 (463)
+.+.+..++
T Consensus 410 g~ll~~~g~ 418 (471)
T PRK10504 410 GLLLGLFGQ 418 (471)
T ss_pred HHHHHHhhh
Confidence 998877653
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=240.30 Aligned_cols=345 Identities=12% Similarity=0.049 Sum_probs=232.7
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
++.++++.+..+.++..+++.+++.++++++|+++||+|||++++.+.++++++++++++++|++.++++|+++|++.+.
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~ 120 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICF 120 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCChHH
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETPNS 179 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~~ 179 (463)
..+....++.|++|+++|++++++...+..+|..++|.+++.+.+. .|||+.|++.++..++..+.. +++||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~ 197 (413)
T PRK15403 121 IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---VHWKVLFAIIAVMGLIAFVGLLLAMPETVKR 197 (413)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 7777788899999999999999999999999999999998876643 479999999988877766654 448887531
Q ss_pred HHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHH
Q 012438 180 IIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSP 259 (463)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++++.+. +. ..+++++.+++ +.++...+...........+..+.|
T Consensus 198 ---~~~~~~~-~~---------------------------~~~~~~~ll~~----~~~~~~~l~~~~~~~~~~~~~~~~P 242 (413)
T PRK15403 198 ---GAVPFSA-KS---------------------------VLRDFRNVFRN----RLFLTGAATLSLSYIPMMSWVAVSP 242 (413)
T ss_pred ---cCCCCCh-HH---------------------------HHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 0000000 00 00112233222 2333333333444444556666778
Q ss_pred HHHHHc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHH
Q 012438 260 VLFRTL-KLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAY 338 (463)
Q Consensus 260 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
.++++. +.+..+.+ +.......+.+++..+.+++.++..+++.......+..++.+++....... .+..+
T Consensus 243 ~~l~~~~g~s~~~~g-l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~--------~~~~~ 313 (413)
T PRK15403 243 VILIDAGGMTTSQFA-WTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW--------PHVWL 313 (413)
T ss_pred HHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc--------cccHH
Confidence 887765 66766666 666666777778777777766554444443333233333333222211000 01122
Q ss_pred HHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHH
Q 012438 339 LILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVL 414 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (463)
......++++.+.+...+ ..... +..-....+|++.++.+.....+...++...+++.+......+....+++.
T Consensus 314 ~~~~~~~l~~~G~~~~~p-~~~~~-al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 387 (413)
T PRK15403 314 WSVLGTSLYAFGIGLIFP-TLFRF-TLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHhH-HHHHH-HhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 233444444444443322 22211 111122347999999999999999999999988877754444444444433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=236.34 Aligned_cols=334 Identities=12% Similarity=0.078 Sum_probs=231.8
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
.+.+++|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+.
T Consensus 31 ~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 110 (381)
T PRK03633 31 LWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAM 110 (381)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHH-HHhhcCCCChHH
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILT-IGAIFLPETPNS 179 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~-~~~~~~~e~~~~ 179 (463)
..+.....+.+..++++|+++++.+..+.++|..+++.++..+.... .|+..+ ..+....... +.....+|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 185 (381)
T PRK03633 111 IWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL---MSVLPW-VTGLVLAAILPLLFTRILNQQA- 185 (381)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---cchHHH-HHHHHHHHHHHHHHhcccCCCC-
Confidence 88888888889999999999999999999999999999987765431 122222 2222111111 11112222110
Q ss_pred HHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHH
Q 012438 180 IIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSP 259 (463)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++ +...+.++.++++..+ ......+...........+.|
T Consensus 186 ----~~---------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lp 224 (381)
T PRK03633 186 ----EN---------------------------------HDSTSIWPMLKLRQAR----LGVNGCIISGIVLGSLYGLMP 224 (381)
T ss_pred ----CC---------------------------------CCCCCHHHHHHhcchH----HHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011222233222211 111112222223334456788
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHH
Q 012438 260 VLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYL 339 (463)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (463)
.+.++.+.+....+ .......++.+++.+..+++.||+++|+.+..+.....++...+... ...
T Consensus 225 ~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~-- 288 (381)
T PRK03633 225 LYLNHQGMSDASIG-FWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQ-------------AAM-- 288 (381)
T ss_pred HHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh-------------HHH--
Confidence 88888887776666 66778888999999999999999999998887766666554433210 111
Q ss_pred HHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHH
Q 012438 340 ILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTT 418 (463)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (463)
.....+.+.+.. ...|.......|..|++.++...+..+...++|..++|.+.|.+.|+.++...+...+.+.+...
T Consensus 289 -~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 289 -APALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred -HHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 111222222222 22355556667888888888888888888999999999999999999886655555444444433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=253.89 Aligned_cols=363 Identities=16% Similarity=0.097 Sum_probs=251.7
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.++.+.++..++++++++++|++.+++.|+++|++.+
T Consensus 26 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 105 (485)
T TIGR00711 26 PTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGG 105 (485)
T ss_pred HHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhh
Confidence 45577789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCChH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETPN 178 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~~ 178 (463)
...+...+++.|++|+++|+++++++..+..+|..+++.+++.+.+. .+||+.|++.++++++..+..++ .||+++
T Consensus 106 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 106 PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN---YHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC---cCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999998776543 57999999988887776655544 666543
Q ss_pred HHHhhCCcHHHHH----------HHHHHHhCch--hHHHHHHHH-------HHHhhcccccCCchh--hhhcccchhhHH
Q 012438 179 SIIQRSNDHQKAQ----------KMLQRVRGIA--DVEAELNDL-------IRASSISKSITHPFK--NIAQRKYRPQLV 237 (463)
Q Consensus 179 ~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 237 (463)
... ++.|..... ....+-...+ +........ ......+.+.+++.. +.++++. +
T Consensus 183 ~~~-~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 257 (485)
T TIGR00711 183 AAS-ENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRN----F 257 (485)
T ss_pred ccc-CCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCC----h
Confidence 111 111111000 0000000000 000000000 000000001111111 2222222 2
Q ss_pred HHHHHHHHHhhhhhhHHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHH
Q 012438 238 MAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQV 316 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 316 (463)
....+..+...........+.|.++++ .+.++.+.+ .......++.+++.++.|++.||++||+.+..+..+..++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~ 336 (485)
T TIGR00711 258 TIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAG-LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFY 336 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHH
Confidence 222333333334455666788888876 577776666 778888899999999999999999999988887777766665
Q ss_pred HHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhh
Q 012438 317 MIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLP 396 (463)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 396 (463)
.+.... .+....+.......+.+.+.+....+..... .+..|++.++++.|+.+....+|+.+++.+.+.
T Consensus 337 ~~~~~~---------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 337 WRAFTF---------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIA-LSGLPPHKIARGSSLSNFTRQLGGSIGTALITT 406 (485)
T ss_pred HHhccC---------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544211 0111222333334444444444433444333 577899999999999999999999999999998
Q ss_pred hhhcc
Q 012438 397 MLCHF 401 (463)
Q Consensus 397 ~~~~~ 401 (463)
+.++.
T Consensus 407 ~~~~~ 411 (485)
T TIGR00711 407 ILTNR 411 (485)
T ss_pred HHHHH
Confidence 88753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=239.49 Aligned_cols=331 Identities=15% Similarity=0.108 Sum_probs=237.0
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+
T Consensus 29 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 108 (385)
T TIGR00710 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGAS 108 (385)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchh
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhh-cCCCChH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAI-FLPETPN 178 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~-~~~e~~~ 178 (463)
...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+. .+||+.|++.++..++..+..+ +.||+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 109 AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999998766543 4799999998887776665554 4676542
Q ss_pred HHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhH
Q 012438 179 SIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYS 258 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
...+ ++ .++. ...+++.++++. ++...+..............+.
T Consensus 186 ~~~~-~~-~~~~------------------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 229 (385)
T TIGR00710 186 YEAR-IQ-ISTY------------------------------FETFLLLLKSKM----FWGYALIYGASFGGFFAFFSGA 229 (385)
T ss_pred Cccc-CC-HHHH------------------------------HHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHHcC
Confidence 1100 00 0000 001222222221 2222222222223344555666
Q ss_pred HHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhH
Q 012438 259 PVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYA 337 (463)
Q Consensus 259 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (463)
|.+++ +.+.++...+ .......++.+++.++.+++.||+++|+.+..+..+..++.+.+...... .....
T Consensus 230 ~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 300 (385)
T TIGR00710 230 PFVYIDIMGVSPSVFG-LLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL--------GLGSW 300 (385)
T ss_pred hHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccchH
Confidence 77765 5777766666 77778888999999999999999999998888776666665554432110 00112
Q ss_pred HHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhc
Q 012438 338 YLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCH 400 (463)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 400 (463)
........+.+.+.+.. .+.......|..| +.++++.++.+.....++.+.+.+.+.+.+.
T Consensus 301 ~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 301 AMIIGPMMFVGIGNSMI-SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 22222333333333333 2344455567766 6799999999999887777777777644433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=242.50 Aligned_cols=275 Identities=19% Similarity=0.201 Sum_probs=211.5
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
.+.+|.++...+.+.+.++++++++++++++|.+.||++..+.+....+++++-.++....+|++.+++.|++.|+.++.
T Consensus 71 g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 71 GLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESG 150 (495)
T ss_pred CCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc
Confidence 35678889999999999999999999999999999999999999999999999998998899999999999999999999
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC---CcchhHHHHHhhHHHHHHHHHHhhc-CCCC
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK---GGWGWRISLAMAAAPASILTIGAIF-LPET 176 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~ 176 (463)
.+|....+++.|+.++||++.++++.+..++|.++|++++..+.++. ...||||.|++.++++++..++.++ +|+.
T Consensus 151 ~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~ 230 (495)
T KOG2533|consen 151 GWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN 230 (495)
T ss_pred cchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence 99999999999999999999999999999999999999998854322 2358999999999999988877755 9999
Q ss_pred hHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHh
Q 012438 177 PNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGL 256 (463)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
|....-.+ ++|.+-..++ .++.......++.+++++. +..+.+.++...+..++.....+.+.+
T Consensus 231 P~~~~fl~--~~ek~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~a~~dp~vw~~~l~~~~~~lv~~~~~~ 294 (495)
T KOG2533|consen 231 PSKAWFLT--DEEKELVVER-------------LRESPSGGIENKFKWKGFK-EALKDPGVWPFSLCYFFLKLVNYGFSY 294 (495)
T ss_pred hhhccccc--hHHHHHHHHH-------------HHhccCCCcccccCHHHHH-HHHhchhHHHHHHHHHHHhhccccHHH
Confidence 86321111 1111000111 1101111101112223322 223344466666777777777888999
Q ss_pred hHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc----CCchhhhHhhHHHH
Q 012438 257 YSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKF----GRKVLFLVGGIQML 312 (463)
Q Consensus 257 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----g~~~~~~~~~~~~~ 312 (463)
|+|.++++ .+++..++. .+..+..++++++.+++|+++||+ .+|........+..
T Consensus 295 ~lpl~l~~~~~~s~~~a~-~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 295 WLPLYLKSNGGYSELQAN-LLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA 354 (495)
T ss_pred HHHHHHHcCCCcChHHhc-cccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999998 457777777 889999999999999999999994 45544444443333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=237.44 Aligned_cols=353 Identities=15% Similarity=0.071 Sum_probs=232.9
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhh---h-hhhHHHHHHHHHHhhcccc
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGG---S-AFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~l~~~r~l~G~~~~ 99 (463)
+|+|.|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++. + .++++.+++.|+++|++.+
T Consensus 41 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~ 120 (402)
T TIGR00897 41 KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP 120 (402)
T ss_pred HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence 56789999999999999999999999999999999999999999999998877653 3 3578899999999999998
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHH-HHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCCh
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGV-LSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETP 177 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~ 177 (463)
...+.....+.+++|+++|++++++.+.+.++|. ++++.++..+.+. .||+..++......++..+.. ++.+|.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (402)
T TIGR00897 121 LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA---FGEMNTLWSALAFVLTGGVIALFSNKDIF 197 (402)
T ss_pred HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 8888888889999999999999999999999997 5788887655432 465555444333322222222 2344432
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+... +++ +++.+ +.++.++.++++ +.++...+..++.....+....|
T Consensus 198 ~~~~-~~~-~~~~~---------------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 244 (402)
T TIGR00897 198 TPQH-MQT-REKFS---------------------------ELGKAATILFTN----PNVLLGGMVRIINTIGLFGFAVF 244 (402)
T ss_pred Cccc-ccC-Ccchh---------------------------hHHHHHHHHHcC----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 000 00000 000112223222 22333333344444556677789
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhh-HhhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 258 SPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFL-VGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
.|.+.++.+.+..+.. .......++..++.+..|+++||++||+... .+.....++...+...... ..+.
T Consensus 245 ~p~~~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~~~ 315 (402)
T TIGR00897 245 LPMFVAELGFSTSEWL-QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH--------FGHS 315 (402)
T ss_pred HHHHHHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc--------cCCc
Confidence 9999999888877766 6667788899999999999999999888654 2222333322222221000 0012
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHH
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM 416 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (463)
.+.......+.+.+... ..+.. ....|..| ++|+++.|+.+....+++.++|.+.+.+.+..++...+...+++.++
T Consensus 316 ~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i 392 (402)
T TIGR00897 316 FAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVV 392 (402)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 23333333333333332 23333 34457655 68999999999999999999999999999998855554444444444
Q ss_pred HHHHHHhc
Q 012438 417 TTFMHFFL 424 (463)
Q Consensus 417 ~~~~~~~~ 424 (463)
+.+...++
T Consensus 393 ~~~~~~~~ 400 (402)
T TIGR00897 393 SAFLTAFI 400 (402)
T ss_pred HHHHHHHh
Confidence 44444443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=238.52 Aligned_cols=322 Identities=13% Similarity=0.103 Sum_probs=229.5
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGN 102 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 102 (463)
++++|+|..+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...
T Consensus 38 ~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~ 117 (400)
T PRK11646 38 VDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFD 117 (400)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred chhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCChHHHH
Q 012438 103 QSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETPNSII 181 (463)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~ 181 (463)
+...+++.|++|+++|++++++......+|..+||.+++.+.+ +|||+.|++.++..++..+.. ++.||.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~--- 190 (400)
T PRK11646 118 PPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLAAAFNAWLLPAYKL--- 190 (400)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhCCcccc---
Confidence 9999999999999999999999999999999999999887763 589999999888776655443 34555321
Q ss_pred hhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHH
Q 012438 182 QRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVL 261 (463)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (463)
++. .++ .++++++.++++. ... .....+...........+.|.+
T Consensus 191 -~~~-~~~------------------------------~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~p~~ 234 (400)
T PRK11646 191 -STV-RTP------------------------------VREGMTRVLRDKR---FVT-YVLTLTGYYMLAVQVMLMLPIM 234 (400)
T ss_pred -ccc-chh------------------------------hHHHHHHHHcCch---HHH-HHHHHHHHHHHHHHHHHhhhhh
Confidence 000 000 0011222332221 111 1111111112222334677888
Q ss_pred HHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-hcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHH
Q 012438 262 FRTLKLGESTSLLLSALVAGGMGTVFAIVSMILAD-KFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLI 340 (463)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (463)
.++.+.++...+ .......+....+....+++.| |++.++.+..+..+..++..++... ++.+..
T Consensus 235 ~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~ 300 (400)
T PRK11646 235 VNDIAGSPSAVK-WMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-------------SNLQQL 300 (400)
T ss_pred HHhhcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------------hhHHHH
Confidence 888776665555 5556655555555555555554 5665666666666665555444332 222333
Q ss_pred HHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc
Q 012438 341 LVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK 402 (463)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 402 (463)
.....+++.+.... .|...++..+..|++.||+++|+.+....+|..++|.+.|.+.|..+
T Consensus 301 ~~~~~l~~~g~~~~-~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 301 FTLICLFYIGSIIA-EPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHHHHHHH-HccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 33333344333322 34555666899999999999999999999999999999999998853
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=234.01 Aligned_cols=321 Identities=23% Similarity=0.303 Sum_probs=261.1
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGN 102 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 102 (463)
.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.++..+.++++.+++.|++.|++.+...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 105 (352)
T cd06174 26 AEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALY 105 (352)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccccccc
Confidence 45558899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHHh
Q 012438 103 QSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSIIQ 182 (463)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~ 182 (463)
+...+++.|++|+++|++.+++.+....+|..+++.++..+.+. .+||+.+++.++..++..+...+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------- 174 (352)
T cd06174 106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES---LGWRWLFLILAILGLLLALLLLFLL-------- 174 (352)
T ss_pred HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 99999999999999999999999999999999999998877654 3699999998888777666655442
Q ss_pred hCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHH
Q 012438 183 RSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLF 262 (463)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (463)
+.++...+..+...........+.|.+.
T Consensus 175 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (352)
T cd06174 175 ----------------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYL 202 (352)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1122233344444456677778888888
Q ss_pred HHc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCch-hhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHH
Q 012438 263 RTL-KLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKV-LFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLI 340 (463)
Q Consensus 263 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (463)
++. +.+..+.+ .......++..++.++.+++.||++||+ .+..+..+..++.+.+... ++.+..
T Consensus 203 ~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~ 268 (352)
T cd06174 203 QEVLGLSAAEAG-LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------------PSLALL 268 (352)
T ss_pred HHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------------ccHHHH
Confidence 776 66666666 8888899999999999999999999999 8888888877777666543 223344
Q ss_pred HHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH
Q 012438 341 LVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFM 420 (463)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (463)
.....+.+.+.+.. .+....+..|..|+++|++.+|+.+....++..+++.+.+.+.+..++...+....+..+++.+.
T Consensus 269 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 269 LVALLLLGFGLGFA-FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHHhcc-chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 44445555554433 45666777899999999999999999999999999999999998887666555555555444444
Q ss_pred H
Q 012438 421 H 421 (463)
Q Consensus 421 ~ 421 (463)
.
T Consensus 348 ~ 348 (352)
T cd06174 348 L 348 (352)
T ss_pred h
Confidence 3
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=235.18 Aligned_cols=325 Identities=14% Similarity=0.130 Sum_probs=225.2
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
.+.+++|+++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+.
T Consensus 16 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~ 95 (377)
T PRK11102 16 VIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAA 95 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCChHH
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETPNS 179 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~~ 179 (463)
..+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+. .+||+.|++.++..++..+.. ++.||+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (377)
T PRK11102 96 ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---FSWHAIFWVLALAAILAAALVFFFIPETLPK 172 (377)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChHHHHHHHHHHHHHHHHHHHHhCCccCcc
Confidence 9999999999999999999999999999999999999998776553 479999999888877765554 457776421
Q ss_pred HHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHH
Q 012438 180 IIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSP 259 (463)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
..+++.+.++ ...++++.++++ +... ..+..+........+..+.|
T Consensus 173 ~~~~~~~~~~------------------------------~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~ 218 (377)
T PRK11102 173 ERRQPFHLRT------------------------------TIRNFASLFRHK---RVLG-YMLASGFSFAGMFSFLTAGP 218 (377)
T ss_pred cccCCCChHH------------------------------HHHHHHHHHcCh---HHHH-HHHHHHHHHHHHHHHHHcCH
Confidence 1000000000 001122222221 1222 22222222333444455556
Q ss_pred HHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHH
Q 012438 260 VLF-RTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAY 338 (463)
Q Consensus 260 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
.+. +..+.++.+.+ .......++.+++.++.+++.||+|||+.+..+.....+..+.+...... ....+
T Consensus 219 ~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 288 (377)
T PRK11102 219 FVYIELNGVSPQNFG-YYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL---------DLGFW 288 (377)
T ss_pred HHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHH
Confidence 555 44677776666 77888889999999999999999999998887776654443333222100 01122
Q ss_pred HHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHH-HHHHHHHhhh
Q 012438 339 LILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF-LFTFLTAQTF 394 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~ 394 (463)
........+..+.... .+.......|..| +.++++.++.+.... ++..+++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 289 ALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222332333222222 2223334467766 789999999877654 5555555543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=237.38 Aligned_cols=329 Identities=16% Similarity=0.094 Sum_probs=235.2
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
.+++++|.++.+.+++.+++.++..++++++|+++||+|||+.+..+.++.+++.+++.++++++.+++.|+++|++.+.
T Consensus 31 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 110 (401)
T PRK11043 31 AIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCS 110 (401)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHH
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~ 180 (463)
..+...+++.|++|++++++..+.......+|..++|.+++.+.+. .|||+.|++.++..++..+..++++|+++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 186 (401)
T PRK11043 111 AAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH---FGWQAIFATLFAITLLLILPTLRLKPSKKA- 186 (401)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHcCCCCCc-
Confidence 8888889999999999999999998888899999999988776543 479999999888887776666666654321
Q ss_pred HhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHH
Q 012438 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPV 260 (463)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
+ + .++. +.++++.++++... . ..+........+..+..+.|.
T Consensus 187 --~-~-~~~~------------------------------~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~p~ 228 (401)
T PRK11043 187 --R-K-QSQD------------------------------ALTFKQLLKSKTYL---G-NVLIFAACSAAFFAWLTGSPF 228 (401)
T ss_pred --c-c-cchH------------------------------HHHHHHHHcChhHH---H-HHHHHHHHHHHHHHHHHHhHH
Confidence 0 0 0000 01122222222111 1 111111222233455667888
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHH
Q 012438 261 LFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLI 340 (463)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (463)
+.++.+.+....+ .......++.+++.++.+++.||+++|+..........++.+.+...... ..+..+..
T Consensus 229 ~~~~~g~s~~~~g-~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 299 (401)
T PRK11043 229 ILEQMGYSPADIG-LSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL--------SHPSLVPL 299 (401)
T ss_pred HHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCcHHHH
Confidence 8888888776666 66667777888999999999999999887766555555444433322110 01112222
Q ss_pred HHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc
Q 012438 341 LVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK 402 (463)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 402 (463)
.....+.+.+.+.. .+.......|..| +.++++.|+.+.....++..++.+.+.+.+...
T Consensus 300 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 300 LIPFCVMAAANGAI-YPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 33333333333333 2333344446666 679999999999999999999999998877543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=233.88 Aligned_cols=344 Identities=11% Similarity=-0.000 Sum_probs=233.5
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGN 102 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 102 (463)
.+|++.+..+.+++.+.+.+++.+++++.|+++||+|||++++.+.++++++++.++++.+. ++.|+++|++.+...
T Consensus 30 ~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~ 106 (393)
T PRK11195 30 LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYS 106 (393)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45668888999999999999999999999999999999999999999999999888877664 788999999999999
Q ss_pred chhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHHh
Q 012438 103 QSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSIIQ 182 (463)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~ 182 (463)
|...+++.|++|+++|++++++.+....+|.++||.+++.+.+. .|+..+.+.+...++..+....+||+|++...
T Consensus 107 pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~ 182 (393)
T PRK11195 107 PAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALIYLLAALFNLFIPRLGARRPG 182 (393)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 99999999999999999999999999999999999999888763 37877777666555555555568887532111
Q ss_pred hCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHH
Q 012438 183 RSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLF 262 (463)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (463)
++.+..+ .. .+.. ...+.+++++..+........ .. ..........|.+.
T Consensus 183 ~~~~~~~---~~-------------~~~~----------~~~~~l~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~ 232 (393)
T PRK11195 183 QSWNPIA---LL-------------RDFF----------HACRVLWRDKLGRFSLAGTTL---FW-GAGATLRFLVLAWA 232 (393)
T ss_pred cCCCHHH---HH-------------HHHH----------HHHHHHHhCchhHHHHHHHHH---HH-HHHHHHHHHHHHHH
Confidence 1110000 00 0000 011233333322222221111 11 12223334445555
Q ss_pred HH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHH
Q 012438 263 RT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLIL 341 (463)
Q Consensus 263 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (463)
++ .+.++.+.+ .......++.+++++..+++.||.++|+.+..+. ..++....+... ++.+...
T Consensus 233 ~~~lg~s~~~~G-~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-------------~~~~~~~ 297 (393)
T PRK11195 233 PVALGITLNQPA-YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-------------HSLLPAY 297 (393)
T ss_pred HHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-------------hHHHHHH
Confidence 43 566766665 8888888999999999999999998887776654 333222222211 2233333
Q ss_pred HHHHHHhhhhhccccceecccccccCCccc-ccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH
Q 012438 342 VMVCLYSSGYCYSWGPLAWLVPSEIFPLEI-RSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFM 420 (463)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (463)
....+.+.+.+....+. .+...+..|++. +|++.++.+...+++..++..+.+.+ +..+......+.+++.+.+...
T Consensus 298 ~~~~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 298 PLLILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred HHHHHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence 44444455444443343 344467666554 79999999999999999999998855 5666555555544444444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=223.50 Aligned_cols=354 Identities=16% Similarity=0.129 Sum_probs=260.8
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh---hHHHHHHHHHHhhc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF---NIYMLIFGRLLLGV 96 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~ 96 (463)
+.+++|+|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++..+-++..+++. ++|++++.+.+.|+
T Consensus 38 ~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~ 117 (417)
T COG2223 38 VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL 117 (417)
T ss_pred hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Confidence 445689999999999999999999999999999999999999999999999999999999985 44599999999999
Q ss_pred ccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCC
Q 012438 97 GIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPE 175 (463)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e 175 (463)
+ |+.+.....++++|+||+++|.++|+.. ..++|..+...++..+........||....+..+..++..+..++ ..|
T Consensus 118 ~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 118 A-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred c-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5 5677899999999999999999999999 888888877777655543321012999998888888887776665 666
Q ss_pred ChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHH
Q 012438 176 TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVG 255 (463)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (463)
.|......++ .. ..+++... +++..|.+.+.++..+.++..+.
T Consensus 196 ~p~~r~~~~~-~~--------------------------------~~~~~~v~----~~~~~W~lsllY~~tFG~Fvgfs 238 (417)
T COG2223 196 VPEHRASVKP-QL--------------------------------PAQLKAVF----SNKDTWLLSLLYFATFGGFVGFS 238 (417)
T ss_pred Chhhhccccc-cc--------------------------------hhHHHHHh----cCcchHHHHHHHHHHHHHHHHHH
Confidence 6643111111 00 01122222 22334556666677777889999
Q ss_pred hhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcc
Q 012438 256 LYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSE 334 (463)
Q Consensus 256 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (463)
.++|.++++ ++.+...++ .......+.+.+.+.++|+++||+|.+|.+......++++...+....... . ..
T Consensus 239 ~~l~~~~~~~fg~~~~~Ag-~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~---~---~~ 311 (417)
T COG2223 239 AYLPMYLVTQFGLSPVTAG-LIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF---G---HG 311 (417)
T ss_pred HHHHHHHHHhcCCChhhHH-HHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc---c---cC
Confidence 999998865 666766666 788888889999999999999999999999998888888877776542100 0 01
Q ss_pred hhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc-ch-hHHHHHHH
Q 012438 335 GYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK-AG-IFFFFGGL 412 (463)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 412 (463)
......+..........+.+...+ +-++...+| ++.|.+.|+....+.+|++.-|..++...+..+ +. .++++...
T Consensus 312 ~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~ 389 (417)
T COG2223 312 GSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAF 389 (417)
T ss_pred cchHHHHHHHHHHHHHhccCcchh-eeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHH
Confidence 223333333444444444454433 344456776 578999999999999999999999999999988 33 34444444
Q ss_pred HHHHHHHHH
Q 012438 413 VLIMTTFMH 421 (463)
Q Consensus 413 ~~~~~~~~~ 421 (463)
.+++.+..+
T Consensus 390 ~~~a~v~~~ 398 (417)
T COG2223 390 YLVALVLTW 398 (417)
T ss_pred HHHHHHHHH
Confidence 444444333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=238.81 Aligned_cols=344 Identities=14% Similarity=0.084 Sum_probs=235.0
Q ss_pred CccccCchh-----HHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccc
Q 012438 24 NYCKFDSQL-----LTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 24 ~~~~~s~~~-----~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 98 (463)
+++|++..+ .+++.+++.++..+++++.|+++||+|||+.+..+.++..++.+++.++++++.+++.|++.|++.
T Consensus 42 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 121 (408)
T PRK09874 42 EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLG 121 (408)
T ss_pred HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 345666543 589999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCCh
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETP 177 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~ 177 (463)
+ ..+....++.|++|+++|++++++...+..+|..+++.+++.+.+. .+||+.|++.++..++..+..++ .||++
T Consensus 122 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (408)
T PRK09874 122 G-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS---YGLRPVFFITASVLFLCFLVTLFCIRENF 197 (408)
T ss_pred h-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 5 5677888899999999999999999999999999999998776543 47999999988877766555443 66653
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+... +++..+.+ +..+..++ ++.........+...........+
T Consensus 198 ~~~~--~~~~~~~~-------------------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T PRK09874 198 QPVS--KKEMLHMR-------------------------------EVVTSLKN---PKLVLSLFVTTLIIQVATGSIAPI 241 (408)
T ss_pred cccc--chhhhHHH-------------------------------HHHHhCcC---CchHHHHHHHHHHHHHHHHHHHHH
Confidence 2100 00000000 00011111 111111111111111223334455
Q ss_pred HHHHHHHcCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcc
Q 012438 258 SPVLFRTLKLGESTS---LLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSE 334 (463)
Q Consensus 258 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (463)
.+.+..+.+.+.... .+......+++.+++.+..|++.||++||+.+..+.....+..+.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------- 308 (408)
T PRK09874 242 LTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV------------- 308 (408)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------------
Confidence 666666544333221 2244555667788888999999999999998887776665554443322
Q ss_pred hhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHH
Q 012438 335 GYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVL 414 (463)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (463)
+..+...+...+.+.+.+.. .+.......+..|++.+++.+++.+....+|..++|.+.|.+.+..++...+...+++.
T Consensus 309 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~ 387 (408)
T PRK09874 309 QTPLQLGILRFLLGAADGAL-LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVV 387 (408)
T ss_pred ccHHHHHHHHHHHHhhhHhh-HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHH
Confidence 22333333333444443332 33444445677888999999999999999999999999999999888766555555544
Q ss_pred HHHHHHH
Q 012438 415 IMTTFMH 421 (463)
Q Consensus 415 ~~~~~~~ 421 (463)
+.+.+..
T Consensus 388 l~~~~~~ 394 (408)
T PRK09874 388 LFNAVYS 394 (408)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=235.26 Aligned_cols=327 Identities=15% Similarity=0.153 Sum_probs=224.5
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccc
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 98 (463)
-|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+.++.+.++.+++.+++..+++++.+++.|+++|++.
T Consensus 26 lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~ 105 (392)
T PRK10473 26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGA 105 (392)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence 44567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCCh
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETP 177 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~ 177 (463)
+...+....++.|++|+++|++..++.+....+|..++|.++..+.+. .+||+.|++.++.+++..+.. .++||++
T Consensus 106 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~---~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 106 GCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK---FPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999998766433 479999999888777666554 4477764
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+.. ++++.++ .+..++.++++ +........ .........+..+
T Consensus 183 ~~~--~~~~~~~-------------------------------~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~ 225 (392)
T PRK10473 183 PAR--APAASSK-------------------------------PRENSESLLNR---FFLSRLVIT-TLSVTVILTFVNT 225 (392)
T ss_pred Ccc--cCCccch-------------------------------HHHHHHHHhCH---HHHHHHHHH-HHHHHHHHHHHHh
Confidence 211 0000000 00011111111 111111111 1111222233445
Q ss_pred HHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 258 SPVLF-RTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 258 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
.|.+. ++.|.+....+ .......++.+++.++.+++.||+|||+.+..+..+..++.+.+.... .
T Consensus 226 ~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------------~ 291 (392)
T PRK10473 226 SPVLLMEQMGFSRGEYA-IIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP-------------S 291 (392)
T ss_pred CHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-------------H
Confidence 56555 45677766655 677788889999999999999999999998888777766666555431 1
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchh
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGI 405 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 405 (463)
.+.......+...+.+.+... ....+..|.+.|+ |..+....++..+++.+.+.+.+..+...
T Consensus 292 ~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 292 HAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 222222223323333322211 1223444544443 44445555666677777777777766543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=235.67 Aligned_cols=344 Identities=10% Similarity=0.050 Sum_probs=232.0
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhh---hhhhhHHHHHHHHHHhhc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALG---GSAFNIYMLIFGRLLLGV 96 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~ 96 (463)
|++++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++++++ .++++++.++++|+++|+
T Consensus 50 p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~ 129 (438)
T PRK10133 50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAA 129 (438)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999886 568899999999999999
Q ss_pred ccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC------------------Cc-----chhH
Q 012438 97 GIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK------------------GG-----WGWR 153 (463)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~------------------~~-----~gwr 153 (463)
|.|...+....++.|+.|+++|.+.+++.+..+.+|..+++.++..+.... .. .+||
T Consensus 130 g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~ 209 (438)
T PRK10133 130 GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQ 209 (438)
T ss_pred HHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHH
Confidence 999999999999999887777777899999999999999998876443100 00 2577
Q ss_pred HHHHhhH-HHHHHHHHHh-hcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhccc
Q 012438 154 ISLAMAA-APASILTIGA-IFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRK 231 (463)
Q Consensus 154 ~~f~~~~-~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (463)
++|+... +..++..+.. ...||.++. +++ ++ ..++...+.+++++++
T Consensus 210 ~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~~~--~~--------------------------~~~~~~~~~~~ll~~~ 258 (438)
T PRK10133 210 TPYMIIVAIVLLVALLIMLTKFPALQSD---NHS--DA--------------------------KQGSFSASLSRLARIR 258 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcc---ccc--cc--------------------------cccchhhhHHHHHhCc
Confidence 7776433 3333333332 225553210 000 00 0000011223333332
Q ss_pred chhhHHHHHHHHHHHhhhhhhHHHhhHHHHH-H-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhH
Q 012438 232 YRPQLVMAILIPFFQQVTGINIVGLYSPVLF-R-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGI 309 (463)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 309 (463)
.... ..+..++..........|.+.++ + ..+.++...+ .......++.++++++.+++.||+++|+.+..+..
T Consensus 259 ~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag-~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~ 333 (438)
T PRK10133 259 HWRW----AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYAL 333 (438)
T ss_pred hHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 2221 22222222233444445666664 4 3577777776 88888999999999999999999999998887766
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHH
Q 012438 310 QMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFL 389 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 389 (463)
+..+.++...+. + . . ..+..+.+.+.+.+..+ |.......|..|+ ..+++.++.. ...+|+.+
T Consensus 334 ~~~~~~~~~~~~-----------~-~-~-~~~~~~~l~glg~~~i~-P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~ 396 (438)
T PRK10133 334 IAMALCLISAFA-----------G-G-H-VGLIALTLCSAFMSIQY-PTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGI 396 (438)
T ss_pred HHHHHHHHHHHc-----------C-C-h-HHHHHHHHHHHHHHHHH-HHHHHHHHcccch-hhccchhHHh-HHhccchH
Confidence 665544433221 1 1 1 12333444455544443 4555555677664 4678888776 45578899
Q ss_pred HHhhhhhhhhccc-chhHHHHHHHHHHH
Q 012438 390 TAQTFLPMLCHFK-AGIFFFFGGLVLIM 416 (463)
Q Consensus 390 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 416 (463)
+|.+.|.+.|..+ ....++...++.+.
T Consensus 397 ~~~i~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 397 VTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999876 44444444444333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=230.49 Aligned_cols=346 Identities=12% Similarity=0.101 Sum_probs=225.7
Q ss_pred ccCCccccCchhHHHHHHHHHH-HHHHHHHHHHhhhhhhcchhhh-hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYI-TGILGSLIASSVTRALGRKVSI-LIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 98 (463)
.+++++|.|.+++|++.+...+ +..++.++.++ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|...
T Consensus 41 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 119 (393)
T PRK15011 41 FLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFG 119 (393)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3467889999999999877655 55566655555 9999999875 5666777788888889999998876665555445
Q ss_pred ccccchhhHHhhhcCCCCccc--chhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhh-cCCC
Q 012438 99 GFGNQSVPLYLSEMAPPKYRG--TFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAI-FLPE 175 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~-~~~e 175 (463)
+...|....++.|+.++++|. ...++.+.+.++|.++++++++.+.+. .|||..|++.++..++..+..+ ++||
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~---~gw~~~f~~~~~~~~~~~~~~~~~~~~ 196 (393)
T PRK15011 120 STANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG---FSFTVMYLSAAVAFIVCGVMVWLFLPS 196 (393)
T ss_pred HhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 677888888888888766553 445788889999999999999887653 4799999998888777666554 4787
Q ss_pred ChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHH
Q 012438 176 TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVG 255 (463)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (463)
.++.. ++ ++ + ..+..+ ++ ++..+........ .......+.
T Consensus 197 ~~~~~---~~--~~----------------------------~-~~~~~~---~~--~~~~~~~~~~~~~-~~~~~~~~~ 236 (393)
T PRK15011 197 MRKEL---PL--AT----------------------------G-TLEAPR---RN--RRDTLLLFVICTL-MWGTNSLYI 236 (393)
T ss_pred cCCCC---cc--cc----------------------------c-cccccc---cc--cccHHHHHHHHHH-HHHHHHHHH
Confidence 64210 00 00 0 000000 01 0111111122222 222334455
Q ss_pred hhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcc
Q 012438 256 LYSPVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSE 334 (463)
Q Consensus 256 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (463)
.+.|.+++ +.+.+....+ .......++.+++.++.|+++||++||+.+..+.....+....+...
T Consensus 237 ~~~p~~l~~~~~~~~~~~g-~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------- 302 (393)
T PRK15011 237 INMPLFIINELHLPEKLAG-VMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA------------- 302 (393)
T ss_pred HHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 67787775 4677766665 55666667778899999999999999987766554444332222111
Q ss_pred hhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHH
Q 012438 335 GYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVL 414 (463)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (463)
++.+..+....+.+...+... +....+.+|..|+ .++++.++.+...++|..++|.+.|.+.+..++...+....++.
T Consensus 303 ~~~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~ 380 (393)
T PRK15011 303 HSPAILLGLQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMI 380 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 112222222222222222111 1223445788885 59999999999999999999999999999888776666666666
Q ss_pred HHHHHHHHhcCC
Q 012438 415 IMTTFMHFFLPE 426 (463)
Q Consensus 415 ~~~~~~~~~~~~ 426 (463)
+.+.+.++..||
T Consensus 381 ~~~~~~~~~~~~ 392 (393)
T PRK15011 381 IATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHhhcC
Confidence 666666666654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=227.53 Aligned_cols=325 Identities=15% Similarity=0.084 Sum_probs=230.0
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
|.+++|+|+|..+.+++.+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|++.|++.+
T Consensus 24 p~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~ 102 (355)
T TIGR00896 24 PQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIA 102 (355)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999988888887 77899999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNS 179 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~ 179 (463)
...+....++.|++| ++|++++++.+.+.++|..+++.++..+.+..+ .+||+.|...++..++... .++|+.++.
T Consensus 103 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~~~--~~~~~~~~~ 178 (355)
T TIGR00896 103 IINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLALL--AWIPQVRRR 178 (355)
T ss_pred HHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH--HHhhhhccc
Confidence 888888889999986 689999999999999999999988766644321 2499998877665443322 223433210
Q ss_pred HHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHH
Q 012438 180 IIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSP 259 (463)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++ . +++..+.+.++.+++ +..+...+..+.....+.....|.|
T Consensus 179 ----~~-~----------------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lp 221 (355)
T TIGR00896 179 ----VA-A----------------------------NQTTTRLTPVRIWRS----PLAWQVTVFFGLQSGLYYSLIGWLP 221 (355)
T ss_pred ----cC-C----------------------------CCCCCCCCCchhhcC----HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 000001122233322 2223233333333345556677899
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHH
Q 012438 260 VLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFG-RKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAY 338 (463)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
.++++.+.+....+ .......++.++++++.|++.||++ ||+.+..+..+..++.+.+.+.. .....
T Consensus 222 ~~~~~~g~~~~~~g-~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 289 (355)
T TIGR00896 222 AILISHGASAATAG-SLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-----------MHGLW 289 (355)
T ss_pred HHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-----------hhHHH
Confidence 99988888776666 7888889999999999999999994 55566666666666555444321 11111
Q ss_pred HHHHHHHHHhhhhhccccceeccccc-ccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc
Q 012438 339 LILVMVCLYSSGYCYSWGPLAWLVPS-EIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK 402 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 402 (463)
. ...+++.+.+.. .+....... +..+++.++...++.+...+++..++|.+.|.+.|+.+
T Consensus 290 --~-~~~l~g~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 290 --A-WALVLGLGQGGA-FPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred --H-HHHHHHHhhhhH-hHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 223334443322 233333333 34445677899999999999999999999999998876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=229.32 Aligned_cols=326 Identities=12% Similarity=0.059 Sum_probs=230.3
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhh---hhhHHHHHHHHHHhhc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGS---AFNIYMLIFGRLLLGV 96 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~ 96 (463)
+.+++++|++..+.|++.+.+++++.+++++.|++.||+|||+++..+.++++++.+++.. .++++.+++.|++.|+
T Consensus 27 ~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~ 106 (410)
T TIGR00885 27 PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTA 106 (410)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 4557888999999999999999999999999999999999999999999999999988654 3689999999999999
Q ss_pred ccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC-----------------------CcchhH
Q 012438 97 GIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK-----------------------GGWGWR 153 (463)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----------------------~~~gwr 153 (463)
|.|...+....++.+..|+++|++.+++.+...++|..+++.++..+.... +..+||
T Consensus 107 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 186 (410)
T TIGR00885 107 GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQ 186 (410)
T ss_pred hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877663211 123699
Q ss_pred HHHHhhHHHHHHHHHHhhc--CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhccc
Q 012438 154 ISLAMAAAPASILTIGAIF--LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRK 231 (463)
Q Consensus 154 ~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (463)
++|++.+++.++..+...+ .||.++ ++ +++ .....+.++.++++
T Consensus 187 ~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~~----------------------------~~~~~~~~~~~~~~ 232 (410)
T TIGR00885 187 TPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AKQ----------------------------ISFSASLSRLARIR 232 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-ccc----------------------------ccchhhHHHHHhCh
Confidence 9999988877765555433 443211 00 000 00001122222222
Q ss_pred chhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhH
Q 012438 232 YRPQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGE--STSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGI 309 (463)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 309 (463)
. ++...+..++..........+.+.+.++.+.+. .... ........+..+|+++++++.||+++|+.+.++..
T Consensus 233 ~----~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~-~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~ 307 (410)
T TIGR00885 233 H----YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAA-NYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAI 307 (410)
T ss_pred h----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 2 222233333333444455677777776654332 2223 34555557789999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHH
Q 012438 310 QMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFL 389 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 389 (463)
+..+..++.... + + ........+.+.+.+..+ |..+....+..+++.+..+.++.... +|+.+
T Consensus 308 ~~~~~~ll~~~~-----------~-~--~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~ 370 (410)
T TIGR00885 308 IGMALCLGSIFA-----------G-G--HVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGI 370 (410)
T ss_pred HHHHHHHHHHHc-----------C-C--hHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccch
Confidence 777666555542 1 1 122334444444444454 66666667888866654455544443 99999
Q ss_pred HHhhhhhhhhcc
Q 012438 390 TAQTFLPMLCHF 401 (463)
Q Consensus 390 ~~~~~~~~~~~~ 401 (463)
.|++.|.+.|..
T Consensus 371 ~p~l~G~~~d~~ 382 (410)
T TIGR00885 371 VPPLQGFIIDMK 382 (410)
T ss_pred HHHHHHHHHHHh
Confidence 999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=229.82 Aligned_cols=336 Identities=11% Similarity=0.041 Sum_probs=233.5
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 101 (463)
+++++|++..+.|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++.|.+.+..
T Consensus 34 l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 113 (395)
T PRK10054 34 LSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVF 113 (395)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred cchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhh-cCCCChHHH
Q 012438 102 NQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAI-FLPETPNSI 180 (463)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~-~~~e~~~~~ 180 (463)
.+....+..|..|+++|++++++.....++|..++|.+++.+.. .+||..|++.++..++..+... ++||+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~ 189 (395)
T PRK10054 114 STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFPLVFIQIWVQRSEKAI 189 (395)
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 88899999999999999999999999999999999999887764 3799999988887776655443 355543110
Q ss_pred HhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHH
Q 012438 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPV 260 (463)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
++ +++ + ..+.++.++++.. +.......+.. ........+.+.
T Consensus 190 ---~~-~~~--~----------------------------~~~~~~~~~~~~~---~~~~~~~~l~~-~~~~~~~~~~~~ 231 (395)
T PRK10054 190 ---AT-ETG--S----------------------------VWSPSVLLQDKAL---LWFTCSGFLAS-FVSGAFASCISQ 231 (395)
T ss_pred ---cc-chh--h----------------------------hhhhhhhccCcee---hHHHHHHHHHH-HHHHHhhhhHHH
Confidence 00 000 0 0001222222221 12121212111 122223334444
Q ss_pred HHHH---cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhH
Q 012438 261 LFRT---LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYA 337 (463)
Q Consensus 261 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (463)
+... .+.+....+ .......+.........+++.||.++|+.+..+..+..++...+... .+..
T Consensus 232 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~~~ 298 (395)
T PRK10054 232 YVMVVADSDFAEKVVA-VVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS------------GNSL 298 (395)
T ss_pred HHHHhcccchHHHHHH-HHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc------------chHH
Confidence 4432 233333333 55556656666667788999999999998887776666665544332 0223
Q ss_pred HHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHH
Q 012438 338 YLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVL 414 (463)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (463)
+...+...+++.+... ..|.....+.+..|++.++++.+..+ ...+|..++|.+.|.+.|+.+....+.....+.
T Consensus 299 ~~~~~~~~~~~~g~~~-~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~ 373 (395)
T PRK10054 299 LLWGMSAAVFTVGEII-YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAI 373 (395)
T ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHH
Confidence 3333344444444332 23455566678899999999998755 677999999999999999998665554443333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-28 Score=230.74 Aligned_cols=355 Identities=13% Similarity=0.062 Sum_probs=240.2
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-----cchhh-hhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHh
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRAL-----GRKVS-ILIGGVAFLAGSALGGSA---FNIYMLIFGRLLL 94 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~ 94 (463)
++.|.|..+++.+ +.....+ ++.+++|+++||+ |||+. +..+.++.+++...+++. ++++.+.+.|++.
T Consensus 40 ~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~ 117 (491)
T PRK11010 40 TVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVI 117 (491)
T ss_pred HhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 3447788888886 3344444 6899999999999 99985 667777777777777665 4788999999999
Q ss_pred hcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCC
Q 012438 95 GVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLP 174 (463)
Q Consensus 95 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 174 (463)
|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+. ..|||..|++.++..++..+..++.|
T Consensus 118 ~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~~GWr~~f~i~a~l~ll~~l~~~~~~ 195 (491)
T PRK11010 118 AFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--YLGWQGMYWLMAALLIPCIIATLLAP 195 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999887776551 24899999999888777766666678
Q ss_pred CChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHH
Q 012438 175 ETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIV 254 (463)
Q Consensus 175 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (463)
|+++.. ++ +++.+ ++...++++.++++... ...... +.........
T Consensus 196 e~~~~~---~~-~~~~~--------------------------~~~~~~l~~~~~~~~~~---~~ll~~-~l~~~~~~~~ 241 (491)
T PRK11010 196 EPTDTI---PV-PKTLE--------------------------QAVVAPLRDFFGRNNAW---LILLLI-VLYKLGDAFA 241 (491)
T ss_pred CCcccc---cc-ccchh--------------------------hhHHHHHHHHHcCcCHH---HHHHHH-HHHHHHHHHH
Confidence 865311 00 00000 00011233443322211 111111 1221223333
Q ss_pred HhhHHHHH-HHcCCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCC
Q 012438 255 GLYSPVLF-RTLKLGESTSLLLSA-LVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGF 332 (463)
Q Consensus 255 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (463)
..+.+.++ ++.|++..+.+ ... ....++.+++.+++|+++||+++|+.+.++..+..+..+.+.....
T Consensus 242 ~~~~~~~l~~~~G~s~~~~g-~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~--------- 311 (491)
T PRK11010 242 MSLTTTFLIRGVGFDAGEVG-LVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI--------- 311 (491)
T ss_pred HHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 44555554 56788887777 554 5666789999999999999999988777665555544433322110
Q ss_pred cchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHH
Q 012438 333 SEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGL 412 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (463)
..++.+.......+.....+... +..+++..+..|++.+++..|+.+....+|..+++.+.|.+.|..|+...+.+..+
T Consensus 312 ~~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~ 390 (491)
T PRK11010 312 TDKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVA 390 (491)
T ss_pred ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 00112222222222111112121 22345557888999999999999999999999999999999999998877777777
Q ss_pred HHHHHHHHHHhcCCC
Q 012438 413 VLIMTTFMHFFLPET 427 (463)
Q Consensus 413 ~~~~~~~~~~~~~~~ 427 (463)
+.+.+++.....+++
T Consensus 391 ~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 391 AAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777666666554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=228.34 Aligned_cols=327 Identities=13% Similarity=0.101 Sum_probs=216.8
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh-hHHHHHHHHHHhhccccc
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF-NIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~ 100 (463)
+++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.++.+.++..++.+++++++ +++.+++.|+++|++.+.
T Consensus 28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 107 (366)
T TIGR00886 28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS 107 (366)
T ss_pred HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh
Confidence 5778899999999999999999999999999999999999999999999999999999999 999999999999998654
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC-------CcchhHHHH-HhhHHHHHHHHHH-hh
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK-------GGWGWRISL-AMAAAPASILTIG-AI 171 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-------~~~gwr~~f-~~~~~~~~~~~~~-~~ 171 (463)
.+....+++|++|+++|++++++.....++|..+++.++..+.... +..+||+.| +..++...+..+. ..
T Consensus 108 -~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 186 (366)
T TIGR00886 108 -FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFF 186 (366)
T ss_pred -hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999777777777776665443211 124799999 4445544443333 34
Q ss_pred cCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhh
Q 012438 172 FLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGI 251 (463)
Q Consensus 172 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (463)
+.+|+|+... + +++.+. + ... . ..+++.....++.++++ + .+...+..+......
T Consensus 187 ~~~~~~~~~~---~-~~~~~~--~---~~~--~----------~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~ 241 (366)
T TIGR00886 187 VGADTPPGKP---A-TGKLSF--K---GAR--W----------SVGTGALGDQLKVFRDR---H-TWILALLYSVTFGSF 241 (366)
T ss_pred hcccCCcccc---c-chhccc--c---ccc--c----------cccchhHHHHHHHHhcc---c-hhhHHHHHHHHHHHH
Confidence 4666653110 0 000000 0 000 0 00000000122222222 2 222333333333444
Q ss_pred hHHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCC
Q 012438 252 NIVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHG 330 (463)
Q Consensus 252 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (463)
..+..+.|.++++ .+.+..+.+ .......+..+++.++.+++.||+|+|+.+..+......+..++....
T Consensus 242 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------- 312 (366)
T TIGR00886 242 LGVSSIFAMFFKDQFGLSKVTAG-AYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL-------- 312 (366)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC--------
Confidence 5666778888765 577776666 777778888999999999999999999887776665555544443321
Q ss_pred CCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHH
Q 012438 331 GFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLF 386 (463)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 386 (463)
.+....+.......+.....+... +..+.+..+..| +.+|++.|+.+..+++|
T Consensus 313 -~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 313 -VSPLSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred -CCcchHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 000023232333333333333332 334455578777 79999999999887765
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=223.87 Aligned_cols=328 Identities=16% Similarity=0.144 Sum_probs=226.2
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.+++.++++++.+++.|++.|++.+
T Consensus 32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 111 (394)
T PRK11652 32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTG 111 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCChH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETPN 178 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~ 178 (463)
...+....+..|++++++|+++.+....+..+|..++|.+++.+.+. .|||+.|++.++..++..+.. ++.||+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 112 VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL---FGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 88888888999999999999999999999999999999998776543 479999999887776655443 45787653
Q ss_pred HHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhH
Q 012438 179 SIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYS 258 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
.. ++ +++. +.++++.++++..+... ...+........+..+.
T Consensus 189 ~~---~~-~~~~------------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 230 (394)
T PRK11652 189 AD---AR-RTRV------------------------------LASYRTLLSNRRFNCYL----LMLIGTLAGIAVFEACS 230 (394)
T ss_pred cc---cc-hhHH------------------------------HHHHHHHHcChHHHHHH----HHHHHHHHHHHHHHHhC
Confidence 11 00 0000 01122222222211111 11222223334444555
Q ss_pred HHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhH
Q 012438 259 PVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYA 337 (463)
Q Consensus 259 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (463)
+.++++ .+.+....+ .......++.+++..+.+++.||.+++... ......+..+.+...... ...+.
T Consensus 231 ~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~ 299 (394)
T PRK11652 231 GVLMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWF--------GVMNV 299 (394)
T ss_pred hHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh--------ccccH
Confidence 666665 677766655 666677778888888888898888733222 222222222221111000 01123
Q ss_pred HHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 012438 338 YLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF 401 (463)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 401 (463)
+.......+.+.+.+.. .|....+..|..| +.++++.++.+....+|+.+++.+.+.+.+..
T Consensus 300 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 300 WTLLVPAALFFFGAGML-FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 33344444444444433 3445555567777 67899999999999999999999988776553
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=219.48 Aligned_cols=334 Identities=14% Similarity=0.092 Sum_probs=237.9
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhh----hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSI----LIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 98 (463)
.+|+|.|..++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+..+++++.+++.|+++|.+.
T Consensus 31 l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~ 108 (382)
T TIGR00902 31 LKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFF 108 (382)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHH
Confidence 456689999999999999999999999999999999985433 222222222 34457789999999999999999
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChH
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPN 178 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~ 178 (463)
+...|...++..++ +++|++..+....+.++|.++++++++.+.+. +|||..|++.++..++..+ ...++|+++
T Consensus 109 ~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~---~g~~~~f~~~~~~~~~~~~-~~~~~~~~~ 182 (382)
T TIGR00902 109 SAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM---FDEQNILAILTAGLAFMLI-GFLIKPTIP 182 (382)
T ss_pred ccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHH-HHHcCCCCC
Confidence 88899988888765 47889999999999999999999998777654 4799999887655333333 233343321
Q ss_pred HHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhH
Q 012438 179 SIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYS 258 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
. +++++++ +++...+.++.+|+ +.++...+..+...........+.
T Consensus 183 ~---~~~~~~~---------------------------~~~~~~~~~~~l~~----~~~~~~l~~~~l~~~~~~~~~~~~ 228 (382)
T TIGR00902 183 P---KDAIPED---------------------------ESQGDSAFIALLKN----PMNLRFLAAVCLIQGAHAAYYGFS 228 (382)
T ss_pred C---Ccccccc---------------------------ccccchhHHHHHcC----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000 00001123333332 223333333333344566667788
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHH
Q 012438 259 PVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAY 338 (463)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
|.++++.|.++...+ .......++.+++.++.+++.||+|+|+.+.++.+...+....+.+. ++.+
T Consensus 229 ~~~l~~~g~s~~~~g-~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------------~~~~ 294 (382)
T TIGR00902 229 AIYWQAAGISASATG-LLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------------EAFP 294 (382)
T ss_pred HHHHHHCCCCHhHHH-HHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------------hhHH
Confidence 888888888887777 67778889999999999999999999999998888888887766543 4445
Q ss_pred HHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHH-HHHHHHHHHHhhhhhhhhcccchhHHHHHHHHH
Q 012438 339 LILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVA-VNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVL 414 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (463)
..+....+.+..++..... ...++++. |++.++++.++.+. ...+|..+++.+.|.+.|+.+...++..+++.+
T Consensus 295 ~~~~~q~l~g~~~~~~~~~-~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~ 369 (382)
T TIGR00902 295 LIFLLQILHCGTFAVCHLA-AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAA 369 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5555566666666655433 45565677 88999999999874 567999999999999999998755555555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=219.65 Aligned_cols=353 Identities=14% Similarity=0.073 Sum_probs=213.2
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhh---hhh-----hHHHHHHHHHHh
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGG---SAF-----NIYMLIFGRLLL 94 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~-----~~~~l~~~r~l~ 94 (463)
++++|+|..+.|++.+.+.++..++++++|+++||+|||++++++..+..++..... .++ ......+++++.
T Consensus 38 ~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (420)
T PRK09528 38 HDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYL 117 (420)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999887666655433221 111 112223344445
Q ss_pred hcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcC-
Q 012438 95 GVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFL- 173 (463)
Q Consensus 95 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~- 173 (463)
|.+.....+....+..+. .+++++.++......++|..+++.+++.+.+ .+|++.|++.++.+++..+..++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 118 GFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred hhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHHHHHHHHHHHhccc
Confidence 544444334443433222 3567788889999999999999999887754 369999999888887766666654
Q ss_pred CCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhH
Q 012438 174 PETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINI 253 (463)
Q Consensus 174 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (463)
+|+++....+ + +++ ++.++...+..++.++++...... +..+.....+..
T Consensus 192 ~~~~~~~~~~-~-~~~------------------------~~~~~~~~~~~~~~l~~~~~~~l~----l~~~~~~~~~~~ 241 (420)
T PRK09528 192 PDAPSTAKVA-N-ALG------------------------ANASAVSLKDALALLKLPKFWFLV----LYVIGVACFYDV 241 (420)
T ss_pred ccccchhhhc-c-chh------------------------cccccccHHHHHHHccCCCeEeeh----HHHHHHHHHHHH
Confidence 3332211000 0 000 000000001112222222211111 111111112223
Q ss_pred HHhhHHHHHHHc----CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCC
Q 012438 254 VGLYSPVLFRTL----KLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDH 329 (463)
Q Consensus 254 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (463)
...+.|.++.+. +.+....+ .......+...++.++.|++.||+|+|+.+..+..+..+..+++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------- 312 (420)
T PRK09528 242 FDQQFPNFFASFFATPEQGTRVFG-YLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------- 312 (420)
T ss_pred HHHHHHHHHHHHHhccCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--------
Confidence 333455554432 33333333 67777778888999999999999999999888777777766555432
Q ss_pred CCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHH-HHHHHHHHHHHHHhhhhhhhhcccchhHHH
Q 012438 330 GGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSI-TVAVNFLFTFLTAQTFLPMLCHFKAGIFFF 408 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 408 (463)
++.+..+....+.+.+.... .+....+.+|.+|++.+++..+. .++...+|..+++.+.|.+.|..|+...+.
T Consensus 313 -----~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~ 386 (420)
T PRK09528 313 -----TGPLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYL 386 (420)
T ss_pred -----ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence 22333333333333333222 12333555788899999988766 677788999999999999999988665555
Q ss_pred H-HHHHHHHHHHHHHhcCC
Q 012438 409 F-GGLVLIMTTFMHFFLPE 426 (463)
Q Consensus 409 ~-~~~~~~~~~~~~~~~~~ 426 (463)
. +++.++..++..+..++
T Consensus 387 ~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 387 ILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4 44444444444444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-27 Score=219.23 Aligned_cols=354 Identities=11% Similarity=0.030 Sum_probs=228.4
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcc-hhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR-KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 101 (463)
++++|++..|+|++.+++.++..++++++|.++||+|| |+++.++.++..++..+..+.++++.+.+.|++.|++.+..
T Consensus 30 ~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (418)
T TIGR00889 30 SKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPT 109 (418)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccH
Confidence 45678999999999999999999999999999999965 77888888988889989999999999999999999987777
Q ss_pred cchhhHHhh--------hcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcC
Q 012438 102 NQSVPLYLS--------EMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFL 173 (463)
Q Consensus 102 ~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 173 (463)
.+...++.. |......|.+..+ .+|.++++.+++.+... ..|+ +|++.++..++..+..+++
T Consensus 110 ~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~---~~~~-~f~~~~~~~~~~~~~~~~~ 179 (418)
T TIGR00889 110 IALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE---LSNI-QLYITAGSSALLGVFALTL 179 (418)
T ss_pred HHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc---chhH-HHHHHHHHHHHHHHHHhcC
Confidence 766655532 2222234455444 36777777776655321 2355 3556666555555555668
Q ss_pred CCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhH
Q 012438 174 PETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINI 253 (463)
Q Consensus 174 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (463)
||+|+...+++. +.++ ..+.+.++.+|++.. +.+.+..+........
T Consensus 180 ~e~~~~~~~~~~---~~~~--------------------------~~~~~~~~~~k~~~~----~~~~~~~~~~~~~~~~ 226 (418)
T TIGR00889 180 PDIPVAKSTAKM---SIKV--------------------------MLGLDAFILFKNKRM----AIFFFFSMLLGAPLQI 226 (418)
T ss_pred CCCCCCcccccc---CHHH--------------------------HhhhhHHHHhcCCCe----eeHHHHHHHHHhHHHH
Confidence 887531100000 0000 000111222222221 1122222222222334
Q ss_pred HHhhHHHHHHHcCCCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhh
Q 012438 254 VGLYSPVLFRTLKLGES-------TSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQL 326 (463)
Q Consensus 254 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (463)
...+.+.++++.+.++. ...+.......+..+++.+..+++.||+|+|+.+..+.++..+....+....
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~---- 302 (418)
T TIGR00889 227 TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD---- 302 (418)
T ss_pred HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC----
Confidence 44666777777665532 2223777888888999999999999999999999988887777655544310
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHH-HHHHHHHHHHHhhhhhhhhccc---
Q 012438 327 GDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITV-AVNFLFTFLTAQTFLPMLCHFK--- 402 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~--- 402 (463)
......+..++..++.+.+.+.. .+....+++|.+|++.|+++.|+.+ ....+|..++|.+.|.+.|+.+
T Consensus 303 -----~~~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~ 376 (418)
T TIGR00889 303 -----PEYFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYG 376 (418)
T ss_pred -----cchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc
Confidence 00011223333344444443332 3444556689999999999999997 5678999999999999999854
Q ss_pred ---chh-HHHHHHHHHHHHHHHHHhcCCCCC
Q 012438 403 ---AGI-FFFFGGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 403 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 429 (463)
+.. +...+++..+.+++.+++.+|+++
T Consensus 377 ~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 377 TFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 443 444555556666666677776543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-26 Score=213.61 Aligned_cols=330 Identities=13% Similarity=0.057 Sum_probs=225.0
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcch----hhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRK----VSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 98 (463)
.+|+|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. .......++++|.+++.|++.|++.
T Consensus 31 l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~ 108 (382)
T PRK11128 31 LKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFF 108 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 355688999999999999999999999999999999994 3333222222 2233445688999999999999999
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChH
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPN 178 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~ 178 (463)
+...+...+++.++ +++|++..+....+.++|..++|++++.+.+. +|||..|++.++..++..+...+.||.++
T Consensus 109 ~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 183 (382)
T PRK11128 109 SPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---FGEQAILWILTAGVASMLLGQLLRPTIMP 183 (382)
T ss_pred cccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHHHccCCCCC
Confidence 99999888888877 46788889999999999999999999887654 47999998877655544444444554321
Q ss_pred HHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhH
Q 012438 179 SIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYS 258 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
. ++ +++ ..++...+++++++++. ++......+...........+.
T Consensus 184 ~----~~-~~~--------------------------~~~~~~~~~~~i~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 228 (382)
T PRK11128 184 Q----GE-SRQ--------------------------QESAGWPAWKALLKEPT----VWRFLLCVSLLQGSHAAYYGFS 228 (382)
T ss_pred c----cc-ccc--------------------------ccccccchHHHHHcChh----HHHHHHHHHHHHHHhHhHHHHH
Confidence 0 00 000 00001123444443332 2222222222223344455666
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHH
Q 012438 259 PVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAY 338 (463)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
|.+.++.+.+....+ .......++.++..++.+++.||+++|+.+..+.....+..+.+... ++.+
T Consensus 229 ~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~ 294 (382)
T PRK11128 229 AIYWQAAGYSASTIG-YLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------------TALP 294 (382)
T ss_pred HHHHHHCCCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------------hhHH
Confidence 778788888876666 67777788889999999999999999999888877777765544332 3344
Q ss_pred HHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHH-HHHHHHHHHhhhhhhhhcccchhHHHHH
Q 012438 339 LILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAV-NFLFTFLTAQTFLPMLCHFKAGIFFFFG 410 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 410 (463)
..++...+.+.++.... +....+..+. +++.+++..++.+.. ..+|..++|.+.|.+.|..+...++..+
T Consensus 295 ~~~~~~~l~g~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~ 365 (382)
T PRK11128 295 WLIVIQILHCGTFTVCH-LAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMA 365 (382)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44555555555554432 3344444565 556678888888744 5677789999999999998865444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-27 Score=223.19 Aligned_cols=333 Identities=16% Similarity=0.143 Sum_probs=223.2
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh----hcch-hhhhHHHHHHHHHHHhhhhhhh------HHHHHHHH
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRA----LGRK-VSILIGGVAFLAGSALGGSAFN------IYMLIFGR 91 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r 91 (463)
.+++|+++.++|++.++..+..++..|+.|+++|| +||| +.++.+....+++.+++.+.++ .+.+++.+
T Consensus 27 ~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 106 (437)
T TIGR00792 27 TDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITY 106 (437)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 45678999999999999999999999999999998 6774 4677888888888888776654 45677788
Q ss_pred HHhhcccccccchhhHHhhhcC-CCCcccchhhhhhHHHHHHHHHHHHhhhhhcc-c---CCcchhHHHHHhhHHHHHHH
Q 012438 92 LLLGVGIGFGNQSVPLYLSEMA-PPKYRGTFNIGFQLCGAIGVLSANLLNYGTQK-I---KGGWGWRISLAMAAAPASIL 166 (463)
Q Consensus 92 ~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~-~---~~~~gwr~~f~~~~~~~~~~ 166 (463)
++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+...+.. . .+..+||+.+++.++++++.
T Consensus 107 ~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~ 186 (437)
T TIGR00792 107 ILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVS 186 (437)
T ss_pred HHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHH
Confidence 8999988888888888889987 46899999999998888888777665433322 1 12358999999998888777
Q ss_pred HHHhh-cCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHH
Q 012438 167 TIGAI-FLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFF 245 (463)
Q Consensus 167 ~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (463)
.+..+ +.||.++. .+ .+ ++.+.+.++.++...+++.++......+
T Consensus 187 ~~~~~~~~~e~~~~----~~-~~-----------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (437)
T TIGR00792 187 LIICFFGTKERYSE----IP-KN-----------------------------IEKKLSLKQIFKALFKNDQLLILCLAYL 232 (437)
T ss_pred HHHHHcCCEecCCC----CC-cc-----------------------------cccCCCHHHHHHHHhCCHHHHHHHHHHH
Confidence 66554 46765411 00 00 0001112222222222222333333333
Q ss_pred HhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhh
Q 012438 246 QQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQ 325 (463)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (463)
...........+.+++.+....+..... .......++.+++.++.++++||+|+|+.+..+..+.+++.+.+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---- 307 (437)
T TIGR00792 233 FYNLAFNIKNGVQVYYFTYVLGDPELFS-YMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA---- 307 (437)
T ss_pred HHHHHHHHHcchhheeEeeecCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc----
Confidence 3333334444444555543332333333 56667788899999999999999999999888877776665554332
Q ss_pred hCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCC-------cccccchhHHHHHHHHHHHHHHHhhhhhhh
Q 012438 326 LGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFLFTFLTAQTFLPML 398 (463)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 398 (463)
+ +..+...+...+.+.+.+.. .+..+++.+|..+ ++.+|.+.|+.+....++..+++.+.|.+.
T Consensus 308 -------~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 308 -------G-SNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred -------c-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12233333333444443333 3445555566654 566899999999999999999999999998
Q ss_pred hcccc
Q 012438 399 CHFKA 403 (463)
Q Consensus 399 ~~~~~ 403 (463)
+..|+
T Consensus 379 ~~~G~ 383 (437)
T TIGR00792 379 GIIGY 383 (437)
T ss_pred HHcCC
Confidence 87653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=211.27 Aligned_cols=348 Identities=12% Similarity=0.088 Sum_probs=224.2
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-----cchh-hhhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhh
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRAL-----GRKV-SILIGGVAFLAGSALGGSA---FNIYMLIFGRLLLG 95 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G 95 (463)
+-|+|.+++|++..+... .+..+++|+++||+ |||| .+..+.++.+++..+.++. .+++.+.+..++.+
T Consensus 28 ~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 105 (402)
T PRK11902 28 VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVA 105 (402)
T ss_pred HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 348899999999777775 68999999999999 8875 7888888888887777776 45788888888888
Q ss_pred cccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCC
Q 012438 96 VGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPE 175 (463)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 175 (463)
+..+...+...+++.|+.|+++|+++.++...+..+|.++++.++..+.+.. .|||..|++.++..++..+...+.||
T Consensus 106 ~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~--~gw~~~f~i~a~~~l~~~l~~~~~~e 183 (402)
T PRK11902 106 FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV--LGWGNTYLLMAGLMLAGALTTLWAPE 183 (402)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8889999999999999999999999999999999999999998877665421 38999999988887766665556777
Q ss_pred ChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHH
Q 012438 176 TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVG 255 (463)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (463)
+++.. ++ .++.++ +.+++++++++++..+............ ......
T Consensus 184 ~~~~~---~~-~~~~~~--------------------------~~~~~~~~l~~~~~~~~~l~~~~l~~~~---~~~~~~ 230 (402)
T PRK11902 184 PEVPA---RP-PRSLGE--------------------------AVVGPLRDFFSRRGAWALLLLIVLYKLG---DAFAGS 230 (402)
T ss_pred Ccccc---cc-cchhHH--------------------------HHHHHHHHHHhCcCHHHHHHHHHHHHhH---HHHHHH
Confidence 65321 00 000000 0011233444443322222211111111 111112
Q ss_pred hhHHHHHHHcCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcc
Q 012438 256 LYSPVLFRTLKLGESTSLLLSALV-AGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSE 334 (463)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (463)
...+.+.++.|.+....+ ..... ..++.+++.++.+++.||+++|+.+..+..+..+..+.+..... ..
T Consensus 231 ~~~~~l~~~~G~~~~~~g-~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~---------~~ 300 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVG-IVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV---------TP 300 (402)
T ss_pred HHHHHHHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------cC
Confidence 233445566787776666 44433 44568899999999999999998877666665554433322110 00
Q ss_pred hhHHHHHHHHHH----HhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHH
Q 012438 335 GYAYLILVMVCL----YSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFG 410 (463)
Q Consensus 335 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 410 (463)
+..+.......+ .+.... ...+....++++.+|.+ ..++.+....++..+++.+.|.+.|..|+...+...
T Consensus 301 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~ 375 (402)
T PRK11902 301 KHLWTMALAIGIENLCGGMGTA-AFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMT 375 (402)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 112222222221 111111 11233444445555544 456666666777777778899999999987777666
Q ss_pred HHHHHHHHHHHHhc
Q 012438 411 GLVLIMTTFMHFFL 424 (463)
Q Consensus 411 ~~~~~~~~~~~~~~ 424 (463)
+++.+.+++.....
T Consensus 376 ~~~~~~~~~~~~~~ 389 (402)
T PRK11902 376 VVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555554333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=210.40 Aligned_cols=341 Identities=13% Similarity=0.060 Sum_probs=219.7
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhh---hh-----hhHHHHHHHHHHh
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGG---SA-----FNIYMLIFGRLLL 94 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~-----~~~~~l~~~r~l~ 94 (463)
++++|.++.+.|++.+.+.++..+++++.|+++||+|||+.++.+....+++..... +. +.+..+++.|++.
T Consensus 30 ~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (396)
T TIGR00882 30 HDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYL 109 (396)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 445688999999999999999999999999999999999999887776655443321 11 2334567778999
Q ss_pred hcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-C
Q 012438 95 GVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-L 173 (463)
Q Consensus 95 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~ 173 (463)
|++.+...+....+..|.. +++++..+......++|.++++.+++.+.+ .+||++|++.++.+++..+..++ .
T Consensus 110 g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~ 183 (396)
T TIGR00882 110 GFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLGSGFALILMLLLMFAK 183 (396)
T ss_pred HHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHHHHHHHHHHHHHHHhC
Confidence 9998888888888877754 334566778888889999999999887654 47999999998888877665555 4
Q ss_pred CCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhH
Q 012438 174 PETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINI 253 (463)
Q Consensus 174 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (463)
||+|+.... + ++. +.+.++++.++.++.++++. .+. ..+..+.....+..
T Consensus 184 ~~~~~~~~~--~---~~~---------------------~~~~~~~~~~~~~~~l~~~~---~~~-~~l~~~~~~~~~~~ 233 (396)
T TIGR00882 184 PKAPSSATV--A---NAL---------------------GANASAFSLKLALELFRQRK---FWM-FVLYVVGVACVYDV 233 (396)
T ss_pred CCCchhhhh--h---ccc---------------------ccccCCCCHHHHHHHHcCCc---HHH-HHHHHHHHHHHHHH
Confidence 444321000 0 000 00000011112334443332 112 22222222233334
Q ss_pred HHhhHHHHHHHcC----CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCC
Q 012438 254 VGLYSPVLFRTLK----LGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDH 329 (463)
Q Consensus 254 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (463)
...+.+.++++.. .+....+ .......+...++.+..+++.||+++|+.+.++..+.++........
T Consensus 234 ~~~~~~~y~~~~~~~~~~~~~~~g-~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-------- 304 (396)
T TIGR00882 234 FDQQFANFFTSFFATPQQGTRVFG-YVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-------- 304 (396)
T ss_pred HHHHHHHHHHHhccccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--------
Confidence 4445666665542 2323333 66777778888899999999999999999888777766655443321
Q ss_pred CCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHH-HHHHHHHHHHHHHhhhhhhhhcccchhHHH
Q 012438 330 GGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSI-TVAVNFLFTFLTAQTFLPMLCHFKAGIFFF 408 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 408 (463)
.+.+.......+.+.+.... ......+..+..|++.++++.+. .+....+|+.+++.+.|.+.|..|+...+.
T Consensus 305 -----~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~ 378 (396)
T TIGR00882 305 -----TTALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYL 378 (396)
T ss_pred -----CChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHH
Confidence 22333333333333332221 11233344566788888888776 678899999999999999999888655544
Q ss_pred HHHHHH
Q 012438 409 FGGLVL 414 (463)
Q Consensus 409 ~~~~~~ 414 (463)
..++..
T Consensus 379 ~~~~~~ 384 (396)
T TIGR00882 379 VLGCIV 384 (396)
T ss_pred HHHHHH
Confidence 444433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=211.08 Aligned_cols=326 Identities=12% Similarity=0.058 Sum_probs=216.8
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-----cchhh-hhHHHHHHHHHHHhhhhh---hhHHHHHHHHH
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRAL-----GRKVS-ILIGGVAFLAGSALGGSA---FNIYMLIFGRL 92 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~ 92 (463)
+.+|+|+|.++.|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++.....++. .+.+.+....+
T Consensus 14 ~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 91 (356)
T TIGR00901 14 WLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAF 91 (356)
T ss_pred HHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 355679999999999755 555555 89999999998 89886 567777777777777776 56677888888
Q ss_pred HhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCC-----cchhHHHHHhhHHHHHHHH
Q 012438 93 LLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKG-----GWGWRISLAMAAAPASILT 167 (463)
Q Consensus 93 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~~gwr~~f~~~~~~~~~~~ 167 (463)
+.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+....+ .++||..|++.++..++..
T Consensus 92 ~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~ 171 (356)
T TIGR00901 92 LIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGL 171 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHH
Confidence 88988888899999999999999999999999999999999999999876654432 2349999999998877766
Q ss_pred HHhhc-CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHH
Q 012438 168 IGAIF-LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQ 246 (463)
Q Consensus 168 ~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (463)
+..++ .||+++. +++++++.+ +.+++++++++++..++...... ..+.
T Consensus 172 ~~~~~~~~e~~~~---~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 220 (356)
T TIGR00901 172 LVTLFLAKEPQED---ASVPKPLTQ---------------------------AVLKPIREFFQRKNMIQALLLLL-LIVL 220 (356)
T ss_pred HHHHHhccCCCcc---cccchhHHH---------------------------HHHHHHHHHHHhcCchHHHHHHH-HHHH
Confidence 65554 5664321 000000000 00112333333332222332222 2233
Q ss_pred hhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhh
Q 012438 247 QVTGINIVGLYSPVLFRTLKLGESTSLLLSALV-AGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQ 325 (463)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (463)
..........+.|.++++.|++..+.+ ..... ..+..+++.++++++.||+|+|+.+..+.++.++....+.+....
T Consensus 221 ~~~~~~~~~~~~~~~l~~~g~~~~~~g-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~- 298 (356)
T TIGR00901 221 YKLGDSAATVLTTLFLLDMGFSKEEIA-LVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASN- 298 (356)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 334555666788888888888777766 44443 446778999999999999999998887777766655444332100
Q ss_pred hCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHH
Q 012438 326 LGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF 384 (463)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 384 (463)
......+.+..+.......+.+.+.+.. .+....+.+|.+|++.||+.+|+.+...+
T Consensus 299 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 299 -GHHDGITFPHLLMLFLTITLEAVTGGLG-TVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred -CcccccccchHHHHHHHHHHHHHHhHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 0000000012233333333334443333 34556677899999999999999887654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=240.95 Aligned_cols=327 Identities=11% Similarity=-0.029 Sum_probs=222.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHhhcccccccchh
Q 012438 29 DSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGG---SAFNIYMLIFGRLLLGVGIGFGNQSV 105 (463)
Q Consensus 29 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~ 105 (463)
+....+++.+++.+++.++++++|+++||+|||++++.+.++..++.++.. .+++++.+++.|+++|++.+...+..
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 345679999999999999999999999999999999998877666555443 45789999999999999999999999
Q ss_pred hHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC------CcchhHHHHHhhHHH-HHHHHHHhhcCCCChH
Q 012438 106 PLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK------GGWGWRISLAMAAAP-ASILTIGAIFLPETPN 178 (463)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~------~~~gwr~~f~~~~~~-~~~~~~~~~~~~e~~~ 178 (463)
.+++.|++|+++|++++++...+..+|.++++.+++++.... +..+|++.+.+..+. .++..++.+++||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999999999999999999999999999998876531 011344444443333 3333444455787763
Q ss_pred HHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhH
Q 012438 179 SIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYS 258 (463)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
....+.+ ++.... . +.....++.+++++ .++...+..+...........+.
T Consensus 205 ~~~~~~~--~~~~~~-------------~----------~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 255 (1146)
T PRK08633 205 AAPEVFD--KKKYLF-------------P----------KLLWRNLKLLRSDR----VLWLAIIGLSYFWFISQLAQANF 255 (1146)
T ss_pred CCccccc--cccccc-------------H----------HHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 2111100 000000 0 00011122232222 22222222222223334455566
Q ss_pred HHHHH-HcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 259 PVLFR-TLKLGES-TSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 259 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
|.++. ..+.+.. ..+ ++.....++.+++.++.+++.||+++++.+.++.++.+++.+.+... .+
T Consensus 256 ~~~~~~~~g~s~~~~~g-~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 321 (1146)
T PRK08633 256 PAYAKEVLGLDNTFQVQ-YLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-------------PS 321 (1146)
T ss_pred HHHHHHHhCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-------------hh
Confidence 66664 4677766 555 78888889999999999999999999888877777666665555433 22
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhh
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLC 399 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 399 (463)
.+..++...+++.+.+... +...+++.+..|++.||+++|+.+++..++..+++.+.+.+..
T Consensus 322 ~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 322 LASVLVLFFLFGFSAGLFI-VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhh-HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333 3445666789999999999999999999998887777655543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=224.83 Aligned_cols=387 Identities=16% Similarity=0.183 Sum_probs=270.7
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHH-HHhhccc
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGR-LLLGVGI 98 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r-~l~G~~~ 98 (463)
.+++++++.+..+++|+.++......+.+++.+.+.||+|.|++.+.|.++..+|.++.++++++|.+++.- ++.|+|.
T Consensus 70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~ 149 (509)
T KOG2504|consen 70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGL 149 (509)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence 345778888999999999999999999999999999999999999999999999999999999999888855 8899999
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCC-Ch
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPE-TP 177 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e-~~ 177 (463)
|..+.....++..|++ ++|+.+.|+...+.++|.++-|.+...+.+ ..|||+.+++.+.+.+-..+....+++ ++
T Consensus 150 ~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~---~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~ 225 (509)
T KOG2504|consen 150 GLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLS---KYGWRGALLIFGGISLNVLVAGALLRPLSP 225 (509)
T ss_pred hhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999998886 899999999999999999998888544443 368999999988887666655554332 22
Q ss_pred HHHHhhCCcHHHHHHHH-------H-HHhCchh--HH---HHHHHHHHHhhccc--ccCCchhhhhcccchhhHHHHHHH
Q 012438 178 NSIIQRSNDHQKAQKML-------Q-RVRGIAD--VE---AELNDLIRASSISK--SITHPFKNIAQRKYRPQLVMAILI 242 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-------~-~~~~~~~--~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 242 (463)
+....+.++.+...... . +....+. .. .......+..++.+ ..+......-....+.+.++.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~ 305 (509)
T KOG2504|consen 226 PKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLAL 305 (509)
T ss_pred CCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHH
Confidence 11000000000000000 0 0000000 00 00011111111111 001111100013334466777777
Q ss_pred HHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCch--hhhHhhHHHHHHHHHHHH
Q 012438 243 PFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKV--LFLVGGIQMLVSQVMIGS 320 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--~~~~~~~~~~~~~~~~~~ 320 (463)
...+...++.....++|.+.++.+.+..+.. .+.++.++..++++++.|++.|+...++ ...++.+..+++.+.+.+
T Consensus 306 ~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa-~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~ 384 (509)
T KOG2504|consen 306 SNLFAYLGFNVPFVYLPSYAKSLGLSSNDAA-FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF 384 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhhH-HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888999999999999999999998 8889999999999999999999987443 334444444444433332
Q ss_pred HHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhc
Q 012438 321 IMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCH 400 (463)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 400 (463)
. ...+..+....+++...+ .+..+...+..|+.+.++-..+.|+...+..++..++|++.|.+.|.
T Consensus 385 ~-------------~~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~ 450 (509)
T KOG2504|consen 385 A-------------TTYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDI 450 (509)
T ss_pred h-------------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeec
Confidence 2 222333333333333332 23344445667999999999999999999999999999999999998
Q ss_pred cc-chhHHHHHHHHHHHHHHHHHhcC
Q 012438 401 FK-AGIFFFFGGLVLIMTTFMHFFLP 425 (463)
Q Consensus 401 ~~-~~~~~~~~~~~~~~~~~~~~~~~ 425 (463)
.+ +...+.+++++.+.+..+++..+
T Consensus 451 tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 451 TGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cCCeeeehhhcChHHHHHHHHHHHhH
Confidence 88 77777777777777776666666
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=195.90 Aligned_cols=342 Identities=13% Similarity=0.067 Sum_probs=210.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhh
Q 012438 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVP 106 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 106 (463)
+-+....|.+.|.|.+...+.++.+|.++||+|||+++++|+...++...+.+.+.|+..++++|++.|+..|- ..+..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHH
Confidence 34667889999999999999999999999999999999999999999999999999998888889999998775 46888
Q ss_pred HHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC---CcchhHHHHHhhHHHHHH-HHHHhhcCCCChHHHHh
Q 012438 107 LYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK---GGWGWRISLAMAAAPASI-LTIGAIFLPETPNSIIQ 182 (463)
Q Consensus 107 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~gwr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~ 182 (463)
++++|.+++|+|++.++.+.+.+++|.++||.+|+++.... +.+-.-.+-++..+++.. .....+++||+-+...+
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~ 222 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKR 222 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 99999999999999999999999999999999999988722 211122223333334433 44556779998432221
Q ss_pred hCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhccc-chh--hHHHHHHHHHHHhhhhhhHHHhhHH
Q 012438 183 RSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRK-YRP--QLVMAILIPFFQQVTGINIVGLYSP 259 (463)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
+ +++.+..+..+. + .+..+.+... .. ...++. ... ..+..+.+..+.....+..+.++.+
T Consensus 223 ~-~~~~~~~~~~~~-------~---~~~~~~~~~~-----~v-~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~ 285 (451)
T KOG2615|consen 223 N-DEHSTLQEAADD-------R---LALLKFARIF-----KV-AALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVL 285 (451)
T ss_pred c-ccccchhhhhhh-------h---hhhcchhhhh-----hh-hhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 1 101111100000 0 0000000000 00 000111 111 1112222333333333333333333
Q ss_pred HHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC--CchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 260 VLF-RTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFG--RKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 260 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
.+. +.+++++.+.+ .+....++.+.+.........||.. .+-.+.....++.-..+++.. ...
T Consensus 286 ~l~~~rfg~ss~~~G-~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~-------------~~~ 351 (451)
T KOG2615|consen 286 FLTHGRFGYSSMQQG-KVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL-------------ART 351 (451)
T ss_pred HhhcCccCCChhhhe-eeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc-------------ccc
Confidence 332 45788888777 6666655555555555445555443 222222222222111111111 122
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF 401 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 401 (463)
.........+..+..+.. .+....+.....|+++||+++|+....+.++-++||.+.|.+....
T Consensus 352 ~~~l~~~s~l~sf~~A~~-vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 352 PVVLYLGSTLKSFSTASV-VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred chhhhHHHHHHHHHHHHh-hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 333333444444443333 3444455578899999999999999999999999999998877654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=208.47 Aligned_cols=353 Identities=10% Similarity=0.100 Sum_probs=234.4
Q ss_pred CccCCccccCchh-HHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccc
Q 012438 20 TKVGNYCKFDSQL-LTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 98 (463)
Q Consensus 20 ~~~~~~~~~s~~~-~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 98 (463)
+.+.+|+|+|..| .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+++.+++++++.+.+.|++.|+++
T Consensus 50 p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaE 129 (511)
T TIGR00806 50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTM 129 (511)
T ss_pred HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHh---hHHHHHHHHHHhhcCCC
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAM---AAAPASILTIGAIFLPE 175 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~---~~~~~~~~~~~~~~~~e 175 (463)
|+.. +...++..|+|+++|+++.++...+..+|.+++++++..+.. +|||+.+.+ ......+.++..+++|.
T Consensus 130 A~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s----~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 130 AARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT----LGWISYSTLNIISLVFMTFSVFLALFLKR 204 (511)
T ss_pred HHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999 999999999999999999999999999999999999887432 578876544 33333445555577886
Q ss_pred ChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhh---hcccchhhHHHHHHHHHHHhhhhhh
Q 012438 176 TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNI---AQRKYRPQLVMAILIPFFQQVTGIN 252 (463)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (463)
.++...-++++..+. ....+.....+.+. .+ .....+.+....++.+ ++..++++.++...+......++++
T Consensus 205 ~~~sl~f~~~~~~~~-~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~ 279 (511)
T TIGR00806 205 PKRSLFFNRLEDVRG-ALPCELDQMVPGPG--GK--LEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYY 279 (511)
T ss_pred Cchhhhhcccccccc-ccccccccCCCCCc--cc--cchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHH
Confidence 655443332211100 00000000000000 00 0000000000111111 1222333444445555566667788
Q ss_pred HHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCC
Q 012438 253 IVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGF 332 (463)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (463)
-+..|...+.++...+.....|..-.+..+.+.+.++..|++-.++.+-..+.++.+...-+.+++...
T Consensus 280 qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~----------- 348 (511)
T TIGR00806 280 LITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS----------- 348 (511)
T ss_pred HHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh-----------
Confidence 888888888877655333244467777778888899999988655533223333322222222222111
Q ss_pred cchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhh
Q 012438 333 SEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTF 394 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 394 (463)
..++.|+..+...++...+.+........+ ++....+.-|..+|+.+++.-+-..+...+.
T Consensus 349 ~t~~Iw~~Y~~yvlf~~~y~flitia~~~i-A~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 349 QSHDIWVLYVTYVLFRGIYQFLVPIATFQI-ASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 235678888888888877776643333333 4555667779999999888777666655443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=237.56 Aligned_cols=335 Identities=12% Similarity=0.016 Sum_probs=225.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhH---HHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhH
Q 012438 31 QLLTTFTSSLYITGILGSLIASSVTRALGRKVSILI---GGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPL 107 (463)
Q Consensus 31 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 107 (463)
...++..+++.+.+.++++++|+++||+|||+++.. +.+...+..+.+...+|++.++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 457888999999999999999999999999997633 33333333344444589999999999999999999999999
Q ss_pred HhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhhCCcH
Q 012438 108 YLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSIIQRSNDH 187 (463)
Q Consensus 108 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 187 (463)
++.+++|+++|++++++.+++.++|.++||++++++... .+|++.|+..++..++..+..+++|++++.. ++.+.
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 206 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS---GNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKI 206 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCee
Confidence 999999999999999999999999999999999988764 4799999666666666666666677654210 00000
Q ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHH-cC
Q 012438 188 QKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRT-LK 266 (463)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 266 (463)
+. ... .+ ....++.+.++ +.++...+..+........+..+.|.++++ ++
T Consensus 207 ~~--~~~-------------~~----------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g 257 (1140)
T PRK06814 207 DR--NII-------------RS----------TITLLKYAKAD----KRIWLAILGISWFWLVGAVVLSQLPLLAKETLG 257 (1140)
T ss_pred cc--chH-------------HH----------HHHHHHHHhcC----chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Confidence 00 000 00 00112233222 223333333333333445566678888866 56
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCC-------CcchhHHH
Q 012438 267 LGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGG-------FSEGYAYL 339 (463)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 339 (463)
.+....+ .+....+++.+++.++.+++.|+..+++.+..+.++..++.+.+.+........... ......+.
T Consensus 258 ~~~~~~g-~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 258 GDENVAT-LFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred CchHHHH-HHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 6666666 788889999999999999999888777766655555544443332210000000000 00022333
Q ss_pred HHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 012438 340 ILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF 401 (463)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 401 (463)
..+..++++.+.+... +...+++.+..|++.+|+++|+.+++..++..+++.+.+.+.+..
T Consensus 337 ~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~ 397 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYI-VPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG 397 (1140)
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444333 335566689999999999999999999999999999999887543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-26 Score=222.30 Aligned_cols=368 Identities=15% Similarity=0.102 Sum_probs=247.3
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh----------------
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF---------------- 82 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---------------- 82 (463)
.+.++++|++++.+.|++.+.+.++++++.++.++++||+|||+++.++.++++++++++++.+
T Consensus 56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~ 135 (633)
T TIGR00805 56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTG 135 (633)
T ss_pred chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccc
Confidence 3567889999999999999999999999999999999999999999999999999999988763
Q ss_pred -----------------------------------hHHHHHHHHHHhhcccccccchhhHHhhhcCCCCcccchhhhhhH
Q 012438 83 -----------------------------------NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQL 127 (463)
Q Consensus 83 -----------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 127 (463)
.+..++++|+++|+|.+..++...+++.|++|+++|+++++++..
T Consensus 136 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~ 215 (633)
T TIGR00805 136 NLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILES 215 (633)
T ss_pred cccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHH
Confidence 255778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccCCc-------------------chhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhhCCcHH
Q 012438 128 CGAIGVLSANLLNYGTQKIKGG-------------------WGWRISLAMAAAPASILTIGAIFLPETPNSIIQRSNDHQ 188 (463)
Q Consensus 128 ~~~~G~~~~~~~~~~~~~~~~~-------------------~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 188 (463)
+..+|.++|+++++.+.....+ .+||..|++.+++.++..+.++++|++.+....+.+ .+
T Consensus 216 ~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~-~~ 294 (633)
T TIGR00805 216 IAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVN-VD 294 (633)
T ss_pred HHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccc-hh
Confidence 9999999999998877643210 138888999888888877666666654321100000 00
Q ss_pred HHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHH-cCC
Q 012438 189 KAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRT-LKL 267 (463)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 267 (463)
+.++. ......+ + ...........+....+...+++.++...+..+......+.+..|+|.++++ ++.
T Consensus 295 ~~~~~--~~~~~~~--~-------~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~ 363 (633)
T TIGR00805 295 VHETE--KLEKSED--K-------SRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGI 363 (633)
T ss_pred hhhhh--ccccccc--c-------cchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 00000 0000000 0 0000000000111112223344456666666666666778888999999875 777
Q ss_pred CCchhHHHHHHHHHH-HHHHHHHHHHHHHhhcCC--chhhhHhhHHHHHHHHHHHHHHHhh-------------------
Q 012438 268 GESTSLLLSALVAGG-MGTVFAIVSMILADKFGR--KVLFLVGGIQMLVSQVMIGSIMAAQ------------------- 325 (463)
Q Consensus 268 ~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 325 (463)
++..++ .+.....+ +.+++.+++|+++||+++ |+.+.++.+...++.+.....+...
T Consensus 364 s~~~ag-~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~ 442 (633)
T TIGR00805 364 SSAEAN-FLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIY 442 (633)
T ss_pred cHHHHH-HHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccC
Confidence 777776 55555444 568999999999999884 4666666666666544422111000
Q ss_pred -----hCC------C-------------------CC-------------------------------C-cc-hh-HHHHH
Q 012438 326 -----LGD------H-------------------GG-------------------------------F-SE-GY-AYLIL 341 (463)
Q Consensus 326 -----~~~------~-------------------~~-------------------------------~-~~-~~-~~~~~ 341 (463)
..+ . .+ - +. .. ....+
T Consensus 443 ~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~ 522 (633)
T TIGR00805 443 VENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFL 522 (633)
T ss_pred CCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCCcccchhHHHHH
Confidence 000 0 00 0 00 01 12222
Q ss_pred HHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHH-HHHHHHHhhhhhhhhc
Q 012438 342 VMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF-LFTFLTAQTFLPMLCH 400 (463)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~ 400 (463)
+...+..+.......|..... -..+|+++|+.+.|+...+.+ +|.+-+|.++|.+.|.
T Consensus 523 ~~~~~~~~~~~~~~~p~~~i~-lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 523 ILFIPLSFIAFITAVPLYMVL-LRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHHHHHHHHHHhccCchheEE-eeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhc
Confidence 333333333334445555444 488999999999999998866 6778999999999886
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=208.61 Aligned_cols=347 Identities=15% Similarity=0.132 Sum_probs=245.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHhhcccccc
Q 012438 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA-----FNIYMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~ 101 (463)
.-|+..++++..+..+...+.+++.|.++||+.|||+++.+.++.++..+..++. .+.|.+++.-++.|++.+..
T Consensus 41 t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~ 120 (524)
T PF05977_consen 41 TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFF 120 (524)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 3378899999999999999999999999999999999999988877665554432 47789999999999999999
Q ss_pred cchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHH
Q 012438 102 NQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSII 181 (463)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~ 181 (463)
.|...+++.|..|+++...++++.+...++..++||.+++.+... .|-.+.|.+.++..++........+..++.
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~---~G~~~~f~inalsfl~~i~~l~~~~~~~~~-- 195 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF---FGAAAAFLINALSFLISILALLRWKPPPPP-- 195 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHccccccc--
Confidence 999999999999999999999999999999999999999887654 356788888777655544444444322210
Q ss_pred hhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHH
Q 012438 182 QRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVL 261 (463)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (463)
++...++ .. +..+..++.+.+++..+.. +....... .........+|.+
T Consensus 196 -~~~~~e~---~~-----------------------~~l~~G~ryv~~~~~l~~~---l~~~~~~~-l~~~a~~aLlPl~ 244 (524)
T PF05977_consen 196 -SSLPRER---FF-----------------------SALREGLRYVRSSPPLRSV---LLRSFLFN-LFASAVWALLPLF 244 (524)
T ss_pred -cccchhh---hh-----------------------hhHHHHHHHHhcchHHHHH---HHHHHHHH-HhhhHHHHhhhHH
Confidence 0000000 00 0001122222222211111 11111211 2223344557888
Q ss_pred HHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHH
Q 012438 262 FRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLI 340 (463)
Q Consensus 262 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (463)
.++ ++.++...+ ++....+++.++|+++.+++.+|+++++.+..+.+..+++.+.+.+. ++.+..
T Consensus 245 a~~~l~~~a~~yG-ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------------~~~~~~ 310 (524)
T PF05977_consen 245 ARDVLGGGASGYG-LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------------PSFWLA 310 (524)
T ss_pred HHHHhCCcHHHHH-HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------------hHHHHH
Confidence 765 555555544 89999999999999999999999999888888887777766666553 345555
Q ss_pred HHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH
Q 012438 341 LVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFM 420 (463)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (463)
...+++.+.+..... ....+...+..|++.||+++++..+....+..+|..+.|.+.+..+....+..++++.+++.++
T Consensus 311 ~~~l~l~G~~~~~~~-~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 311 LIALFLAGAAWIIAN-SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 555555555544433 3344556889999999999999999999999999999999999998766666665555544444
Q ss_pred HHhc
Q 012438 421 HFFL 424 (463)
Q Consensus 421 ~~~~ 424 (463)
....
T Consensus 390 ~~~~ 393 (524)
T PF05977_consen 390 ALRF 393 (524)
T ss_pred HHHh
Confidence 4433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-26 Score=198.66 Aligned_cols=345 Identities=14% Similarity=0.028 Sum_probs=241.0
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGN 102 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 102 (463)
+.+.+-+++++|++.+++.+...+.+++.|.+.||+|+|..+++|++++..+++++++..+++.++++|.+||+|.+...
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHhhhcCCCCc-ccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHH
Q 012438 103 QSVPLYLSEMAPPKY-RGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSII 181 (463)
Q Consensus 103 ~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~ 181 (463)
....++++|.+|+++ |++++|+...+.++|.++||++|+++.+.. |.+.+|++.++++++-..+.+++-|..+
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~---Gk~aPFlVL~~v~Lld~~L~l~vi~p~~--- 251 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA---GKSAPFLVLAIVLLLDGALQLLVIEPTE--- 251 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc---CCcCcHHHHHHHHHHHHHHHHheeCccc---
Confidence 999999999999655 799999999999999999999999998875 6999999999999998887777433211
Q ss_pred hhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHH
Q 012438 182 QRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVL 261 (463)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (463)
.+ ++ ++.+..+++++++.++ ++.................--++.+
T Consensus 252 --~~-~~----------------------------~~~~~~~~~~Ll~dP~----I~~~agai~~~n~~lafLePtlslw 296 (464)
T KOG3764|consen 252 --MD-PD----------------------------STEQGTPMWSLLMDPY----ILLIAGAITFSNSSLAFLEPTLSLW 296 (464)
T ss_pred --cC-cc----------------------------ccccCccHHHHHhCch----HhhhhcchhhccchHHHhCcccHHH
Confidence 00 00 1112334555554432 2222221111112223333334454
Q ss_pred HHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHH--HHHHHHHHHhhhCCCCCCcchhHHH
Q 012438 262 FRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVS--QVMIGSIMAAQLGDHGGFSEGYAYL 339 (463)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (463)
..+.-..+....+.......+...++..+.|.+.||++..+.+.....+..++ .....+.- .....+.
T Consensus 297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~----------~~~~L~v 366 (464)
T KOG3764|consen 297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT----------SIAQLWV 366 (464)
T ss_pred HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh----------hHHHHhh
Confidence 44433355544447788888899999999999999999544433333332222 22222220 1122333
Q ss_pred HHHHHHHHhhhhhccccceecccccccCCcc---cccchhHHHHHHHHHHHHHHHhhhhhhhhcccchh-HHHHHHHHHH
Q 012438 340 ILVMVCLYSSGYCYSWGPLAWLVPSEIFPLE---IRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGI-FFFFGGLVLI 415 (463)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 415 (463)
.....++.+........|....++ |....+ ..|.+.++......++.+++|.+.|.+.+..|... ..+.+....+
T Consensus 367 p~~~l~~~i~~~dasl~P~l~~lv-d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i 445 (464)
T KOG3764|consen 367 PNFGLGFGIGLADASLIPTLGYLV-DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI 445 (464)
T ss_pred hhHHHHHHHHHHHHHHhhhhHHhc-chhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence 333444443333344445444443 443444 77899999999999999999999999999998443 3334444444
Q ss_pred HHHH
Q 012438 416 MTTF 419 (463)
Q Consensus 416 ~~~~ 419 (463)
.+-+
T Consensus 446 yapv 449 (464)
T KOG3764|consen 446 YAPV 449 (464)
T ss_pred HHHH
Confidence 4333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=204.91 Aligned_cols=359 Identities=13% Similarity=0.030 Sum_probs=219.2
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hcchhhhhHHHHHHHHHHHhhhhhhhHHH-HHHHHHHhhccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRA-LGRKVSILIGGVAFLAGSALGGSAFNIYM-LIFGRLLLGVGIGF 100 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~-l~~~r~l~G~~~~~ 100 (463)
++++|++..+.+++.+.+.....+..+++|+++|| +||||+++.+.+++++++++++++++... ++++|+++|+|.|.
T Consensus 42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~ 121 (489)
T PRK10207 42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGL 121 (489)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccc
Confidence 45678899999999999998888999999999999 99999999999999999999999876554 55899999999999
Q ss_pred ccchhhHHhhhcCCCC--cccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChH
Q 012438 101 GNQSVPLYLSEMAPPK--YRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPN 178 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~ 178 (463)
..+...+++.|.+|++ +|+++.++++.+.++|..++|.+++++.+. .|||+.|++.++..++..+...+.++..+
T Consensus 122 ~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~---~gw~~~F~i~~i~~~~~~~~~~~~~~~~~ 198 (489)
T PRK10207 122 FKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK---FGYSVTYNLCGAGLIIALLVYFACRGMVK 198 (489)
T ss_pred ccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHHHHHHHcchhhc
Confidence 9999999999999877 457799999999999999999998888664 47999999865533333333333332211
Q ss_pred HHHhh--CCcHHHHHHHH------------HHHhCchhHHHHHHHH------HHHhhcccccCCchhhhhcccchhhHHH
Q 012438 179 SIIQR--SNDHQKAQKML------------QRVRGIADVEAELNDL------IRASSISKSITHPFKNIAQRKYRPQLVM 238 (463)
Q Consensus 179 ~~~~~--~~~~~~~~~~~------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (463)
....+ +++.|.....+ ................ .-...++.+. .+.. +++.+.
T Consensus 199 ~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~----~~~~----r~r~~~ 270 (489)
T PRK10207 199 DIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL----DKTG----RNKMFV 270 (489)
T ss_pred ccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC----CHHH----HHHHHH
Confidence 10000 00011100000 0000000000000000 0000000000 0111 122222
Q ss_pred HHH--HHHHHhhhhhhHHHhhHHHHHHH-cCCCC---c-hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh-------h
Q 012438 239 AIL--IPFFQQVTGINIVGLYSPVLFRT-LKLGE---S-TSLLLSALVAGGMGTVFAIVSMILADKFGRKVL-------F 304 (463)
Q Consensus 239 ~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~ 304 (463)
.+. ......+..+.......+.+.++ .+.+. . ... .+..+..+..++.+++.+++.||+++|+. +
T Consensus 271 ~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~-~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~ 349 (489)
T PRK10207 271 AFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPV-SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKF 349 (489)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHH-HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 221 11222222333333445555543 22211 1 112 34445556666778888999999998863 6
Q ss_pred hHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHH
Q 012438 305 LVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF 384 (463)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 384 (463)
.++.++.+++.+.+....... ...+ ...+.++.+....+.+.+.... .|.....+.+..|++.++.++|+.+....
T Consensus 350 ~~G~~l~~~~~~~~~~~~~~~-~~~~--~~~s~~~~i~~~~l~g~Ge~~~-~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ 425 (489)
T PRK10207 350 TLGMFLCSLGFLTAAAAGMWF-ADAQ--GLTSPWFIVLVYLFQSLGELFI-SALGLAMIAALVPQHLMGFILGMWFLTQA 425 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-cCCC--CccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 667777666655443211111 1111 1122344444555555554444 45555666788999999999999999999
Q ss_pred HHHHHHHhhhhhh
Q 012438 385 LFTFLTAQTFLPM 397 (463)
Q Consensus 385 ~g~~~~~~~~~~~ 397 (463)
+|+.++..+....
T Consensus 426 ig~~lg~~l~~~~ 438 (489)
T PRK10207 426 AAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998777544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=198.98 Aligned_cols=384 Identities=11% Similarity=0.047 Sum_probs=234.4
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccch
Q 012438 26 CKFDSQLLTTFTSSLYITGILGSLIASSVTRA-LGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 26 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 104 (463)
+|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++++++.++.+++++++.++++|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 68899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhcCCCCc---ccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCC----CCh
Q 012438 105 VPLYLSEMAPPKY---RGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLP----ETP 177 (463)
Q Consensus 105 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~----e~~ 177 (463)
..++++|++|+++ |+++.++++.+.++|.++|+.+++.+.+. .|||+.|++.++..++..+...+.+ +.|
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIG 199 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHHcccccccCC
Confidence 9999999998764 88899999999999999999998877653 4799999988765555444433322 222
Q ss_pred HHHHhhCCcHHHHHHHHHH----------------HhCchhHHHHHHH-----HHHHhhcccccCCchhhhhcccchhhH
Q 012438 178 NSIIQRSNDHQKAQKMLQR----------------VRGIADVEAELND-----LIRASSISKSITHPFKNIAQRKYRPQL 236 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (463)
+. .++.+.++.+..... ..+....+..... .........+ ....+.. +.+...
T Consensus 200 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~ 273 (475)
T TIGR00924 200 SV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFK--PRLDAVA--RNKMYA 273 (475)
T ss_pred CC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh--ccCCHHH--HhHHHH
Confidence 10 000001110000000 0000000000000 0000000000 0011110 111111
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHH-cCCCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----chhh--
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGE----STSLLLSALVAGGMGTVFAIVSMILADKFGR-----KVLF-- 304 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-----~~~~-- 304 (463)
+..+.+........+.-.....+.+.++ .+.+. -... .+..+..+..++..++..++..|++| +...
T Consensus 274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~-~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVI-WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHH-HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 2223333333333333333444544433 22211 1133 56667777767776665544444433 2333
Q ss_pred hHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHH
Q 012438 305 LVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF 384 (463)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 384 (463)
.++.++.+++...+.+.... .. .....+.++.+....+.+.+-.. ..|....+..+..|++.||+.+|+......
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~--~~--~~~~~s~~~~i~~~~~~~~ge~~-~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~ 427 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWF--AD--AGGLTSPWFMVLIYLFQTLGELM-ISPLGLSWWTKIAPQRLMGQMLGMWFLAQA 427 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhh--cC--CCCccCHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 56666666666665543111 11 01123445555555555555443 357777888899999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcccch-hHHHHHHHHHHHHHHHHHhc
Q 012438 385 LFTFLTAQTFLPMLCHFKAG-IFFFFGGLVLIMTTFMHFFL 424 (463)
Q Consensus 385 ~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 424 (463)
+|..+++.+.....+..++. .+...+.++++++++..+..
T Consensus 428 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 428 MGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887766655533 34444444444444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-24 Score=185.22 Aligned_cols=335 Identities=14% Similarity=0.088 Sum_probs=249.4
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHhh
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGG---SAFNIYMLIFGRLLLG 95 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l~G 95 (463)
.|++++.|+++..|.+.+...++.++.+.+++.|++.+|+|+|+.+++++.++++++.+.. ...+|..++++-++.|
T Consensus 36 ip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila 115 (422)
T COG0738 36 IPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILA 115 (422)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999984 5688999999999999
Q ss_pred cccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC----------------CcchhHHHHHhh
Q 012438 96 VGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK----------------GGWGWRISLAMA 159 (463)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----------------~~~gwr~~f~~~ 159 (463)
.|.+.....+..+++...++++..+.+++.+..+++|.+++|+++..+.... ....||++|...
T Consensus 116 ~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~ 195 (422)
T COG0738 116 SGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLIL 195 (422)
T ss_pred hhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999999988899999999999999999999987764410 012488899888
Q ss_pred HHHHHHHHHHhhc--CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHH
Q 012438 160 AAPASILTIGAIF--LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLV 237 (463)
Q Consensus 160 ~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (463)
+...+++.+.... .|+.++...++.+ ..+....+.+++++ +
T Consensus 196 ~~~lvll~v~~~~~k~p~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~~----~ 238 (422)
T COG0738 196 AGLLVLLAVLILLSKLPDLQVAAPSLGA---------------------------------SGSAGLSSLFQNKH----L 238 (422)
T ss_pred HHHHHHHHHHHHhccCCcCCcccccccc---------------------------------cccchHHHHHhChH----H
Confidence 8777776666654 4544311110000 00112334443333 3
Q ss_pred HHHHHHHHHhhhhhhHHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHH
Q 012438 238 MAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQV 316 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 316 (463)
....+..++..........|++.++.+ .+.+..++. ...+....+.++|++++.++..|+...|.+.+...+..+.++
T Consensus 239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa-~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~ 317 (422)
T COG0738 239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAA-YYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLL 317 (422)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 344455555556677778888988887 566666666 888899999999999999999999998888877766655555
Q ss_pred HHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhh
Q 012438 317 MIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLP 396 (463)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 396 (463)
...+. + ..+.+....+.+.+.+.. .|.......+..| +... ..|.......+|+.+.|++.|+
T Consensus 318 ~~~l~-------------~-g~v~~~~l~~ig~F~sim-fPTIfslal~~l~-~~ts-~~s~~l~maivGGAiiP~l~G~ 380 (422)
T COG0738 318 AVALI-------------G-GVVALYALFLIGLFNSIM-FPTIFSLALKNLG-EHTS-VGSGLLVMAIVGGAIIPPLQGV 380 (422)
T ss_pred HHHHh-------------c-ChHHHHHHHHHHHHhHHH-HHHHHHHHHhccC-cccc-ccceeeeeheecchHHHHHHHH
Confidence 55443 1 133334444444444444 3566666677777 3333 3344556678899999999999
Q ss_pred hhhcccchhHHH
Q 012438 397 MLCHFKAGIFFF 408 (463)
Q Consensus 397 ~~~~~~~~~~~~ 408 (463)
+.|..+......
T Consensus 381 i~d~~g~~~~~~ 392 (422)
T COG0738 381 IADMFGIQLTFL 392 (422)
T ss_pred HHHhhhhHHHHH
Confidence 999998554433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=178.45 Aligned_cols=325 Identities=17% Similarity=0.114 Sum_probs=250.6
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
++.+|+|+|.+..|+++++..+...+.+++..++++|+|.++.+..++++..+|.++-... +.+.++.+-.+.|.|.+.
T Consensus 37 ~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav 115 (395)
T COG2807 37 EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAV 115 (395)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHH
Confidence 4578889999999999999999999999999999999999999999999999999998888 788899999999999999
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHH
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSI 180 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~ 180 (463)
.....+.++-+.+| ++-+..++++.+..++|..+++.+...+.... .|||....+-+.++++.++.++.-...++ .
T Consensus 116 ~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~WlPq~~r~~-~ 191 (395)
T COG2807 116 INVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIWLPQALREQ-A 191 (395)
T ss_pred HHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHHhhhccccc-c
Confidence 99999999999998 77899999999999999999998876666544 47999999999999888777764211110 0
Q ss_pred HhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHH
Q 012438 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPV 260 (463)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
. + .+.+..+..++ .+++.-|.+.+.+..+...++....|+|.
T Consensus 192 ~---~-------------------------------~~~~~~~~~~v----w~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ 233 (395)
T COG2807 192 A---S-------------------------------IATKLVSVRKV----WRSPLAWQVTLFMGLQSLLYYIVIGWLPA 233 (395)
T ss_pred c---c-------------------------------ccccccccccc----ccCchhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0 0 00011112223 33444566667777777888999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHH
Q 012438 261 LFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKF-GRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYL 339 (463)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (463)
++.+.|.+..+++ .+.....+.+++.++....+.+|. ++|+.......++.++.+.+.+. +....+.
T Consensus 234 ili~~G~sa~~aG-~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~-----------P~~~~~l 301 (395)
T COG2807 234 ILIDRGLSAAEAG-SLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA-----------PGQLPIL 301 (395)
T ss_pred HHHHcCCCHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-----------hhhHHHH
Confidence 9999999999988 888899999999999999999975 45666666666666666666543 1222222
Q ss_pred HHHHHHHHhhhhhccccceecccc-cccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccch
Q 012438 340 ILVMVCLYSSGYCYSWGPLAWLVP-SEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAG 404 (463)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 404 (463)
. +.+++.+.+..+ |+....+ ...-.++..+.-.|+.+.++++-+..+|.++|.+.|..+..
T Consensus 302 w---~~llG~G~G~~F-~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 302 W---ALLLGLGQGGAF-PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred H---HHHHhCccchHH-HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 2 233344433332 2322332 33445567788889999999999999999999999998843
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=198.90 Aligned_cols=386 Identities=11% Similarity=0.035 Sum_probs=240.5
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh------hhHHHHHHHHHHh
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA------FNIYMLIFGRLLL 94 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------~~~~~l~~~r~l~ 94 (463)
.+++++|+|..+++++.+.. ....+++++.|+++||+|||+++.++.+++++++++++++ ++++.+++.|++.
T Consensus 52 ~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~ 130 (591)
T PTZ00207 52 AMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLM 130 (591)
T ss_pred HHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 46788899999999998874 4455778889999999999999999999999999999997 6899999999999
Q ss_pred hcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHH-HHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-
Q 012438 95 GVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLS-ANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF- 172 (463)
Q Consensus 95 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~- 172 (463)
|+|.+...+.....+.+|+| ++||++.++...+.++|.++ +++...++. .+|+..|++.+++.++..++.+.
T Consensus 131 G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~vv~ll~~~~ 204 (591)
T PTZ00207 131 TLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALVVGILAIVF 204 (591)
T ss_pred HHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999997 78999999999999999976 444444433 26888888888887776655543
Q ss_pred C--CCChHHHHhhCCcHHHHHHHHHHHh--------------------------------------CchhHH-----H-H
Q 012438 173 L--PETPNSIIQRSNDHQKAQKMLQRVR--------------------------------------GIADVE-----A-E 206 (463)
Q Consensus 173 ~--~e~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~-----~-~ 206 (463)
+ |+.|++..++++ .+++++..++.+ +.+... . .
T Consensus 205 vr~p~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~ 283 (591)
T PTZ00207 205 MRLPPFHLTGYQEKH-LDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTV 283 (591)
T ss_pred eeCCcchhhcccccC-CCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3 444444322221 111111111100 000000 0 0
Q ss_pred H------H-------HHH----H-H------hh--------ccc--------c-cCCchhhhhcccchhhHHHHHHHHHH
Q 012438 207 L------N-------DLI----R-A------SS--------ISK--------S-ITHPFKNIAQRKYRPQLVMAILIPFF 245 (463)
Q Consensus 207 ~------~-------~~~----~-~------~~--------~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (463)
. . ... + + +. ..+ + ......+-+.....+.-+|++...++
T Consensus 284 ~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~ 363 (591)
T PTZ00207 284 IVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIF 363 (591)
T ss_pred HHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHH
Confidence 0 0 000 0 0 00 000 0 00001111112223445666777777
Q ss_pred HhhhhhhHHHhhHHHHHHHc-CCCCch-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCch--------hhhHhhHHHHHHH
Q 012438 246 QQVTGINIVGLYSPVLFRTL-KLGEST-SLLLSALVAGGMGTVFAIVSMILADKFGRKV--------LFLVGGIQMLVSQ 315 (463)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--------~~~~~~~~~~~~~ 315 (463)
+...........+.++.+.+ |...+. ....+.++.++++.+|.+..|.+.....+|+ .......++.++.
T Consensus 364 cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~ 443 (591)
T PTZ00207 364 CCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITM 443 (591)
T ss_pred HhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHH
Confidence 77666677777888888888 663333 1213678889999999999998873332222 1111112233333
Q ss_pred HHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHH-Hhhh
Q 012438 316 VMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLT-AQTF 394 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~-~~~~ 394 (463)
+++.... + .....+...+.+.+++..+ ++.....+|+|. ++-|+-.-+.....-+|+.+. ..+.
T Consensus 444 lll~~~~------------p-~~~L~~~~~lvg~~~G~~~-~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~ 508 (591)
T PTZ00207 444 LTLFLTL------------P-KAALPLPYFIAAFANGFMA-ATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLY 508 (591)
T ss_pred HHHHHHC------------C-ccHhHHHHHHHHHHhhHhH-HHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHH
Confidence 3333321 1 0233444445555555544 355566689999 888887777777777777776 5667
Q ss_pred hhhhhccc--------------chhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012438 395 LPMLCHFK--------------AGIFFFFGGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 395 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (463)
|.++|... ..++.+.++++++..++......++++
T Consensus 509 G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~ 557 (591)
T PTZ00207 509 GEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRR 557 (591)
T ss_pred HHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence 77776531 235666666666665555554445543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=190.06 Aligned_cols=357 Identities=16% Similarity=0.147 Sum_probs=212.5
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 101 (463)
+..|+|- .....|+.+.+.++.+++.++.|.++|.||||.+++.+.++..+|+++++.++|...++++-.+.|+|.|..
T Consensus 70 I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~ 148 (599)
T PF06609_consen 70 INADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQ 148 (599)
T ss_pred HHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHH
Confidence 3344453 456789999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc--CCCChHH
Q 012438 102 NQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF--LPETPNS 179 (463)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~--~~e~~~~ 179 (463)
. .....++|..|.|.|....++...........++.++..+.. +.+|||.|++.++...+.++..++ .|++.+.
T Consensus 149 ~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~ 224 (599)
T PF06609_consen 149 E-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQ 224 (599)
T ss_pred H-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 6 456668999999999887766665555544456666543322 248999999998887766555433 3332221
Q ss_pred HHhhCCcHHHHHHHHHHHh------------------Cc---h-hHHHHHHHHH-------H-H-hhcccccCCch--hh
Q 012438 180 IIQRSNDHQKAQKMLQRVR------------------GI---A-DVEAELNDLI-------R-A-SSISKSITHPF--KN 226 (463)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~------------------~~---~-~~~~~~~~~~-------~-~-~~~~~~~~~~~--~~ 226 (463)
...++....+.-+.++.+. +. + +....+.... - . -+.....++++ .+
T Consensus 225 ~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~ 304 (599)
T PF06609_consen 225 LHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHR 304 (599)
T ss_pred hccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHH
Confidence 1111111111111122110 00 0 0000000000 0 0 00000112222 22
Q ss_pred hhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHH-cCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 012438 227 IAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGES--TSLLLSALVAGGMGTVFAIVSMILADKFGRKVL 303 (463)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 303 (463)
++++ +|.+...++..+.....++....+.|..... ++.+.. ...++.....+++..++.++.+.+..+++|-|.
T Consensus 305 Lf~~---~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw 381 (599)
T PF06609_consen 305 LFKD---RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKW 381 (599)
T ss_pred Hhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhH
Confidence 3322 2334444344444444455555555655443 333332 122367777888888999999999998877555
Q ss_pred h-hHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHH
Q 012438 304 F-LVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAV 382 (463)
Q Consensus 304 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 382 (463)
. +++..++.+.+-.+... . ..+.... +....+.+.+.+.... .....++-..|++.-+++.|+...+
T Consensus 382 ~li~~~~~~ta~~Gama~~------~---~~n~~~~--i~~~~l~g~giG~~~~-~~~~~~ql~~p~~~ig~a~gL~~s~ 449 (599)
T PF06609_consen 382 QLIFGSVLMTAFCGAMAAV------R---PDNKNAA--IAFLVLAGFGIGGILV-PAIVIAQLIVPDEDIGTATGLTGSI 449 (599)
T ss_pred HHHHHHHHHHHHHHHHHHc------c---CCCcchH--HHHHHHHHHhHHHHHH-HHHHeeEeeeCchHHHHHHHHHHHH
Confidence 4 45544444333332221 1 1111122 2222233333332222 2233445567999999999999999
Q ss_pred HHHHHHHHHhhhhhhh
Q 012438 383 NFLFTFLTAQTFLPML 398 (463)
Q Consensus 383 ~~~g~~~~~~~~~~~~ 398 (463)
+.+|+.++..++..+.
T Consensus 450 R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 450 RSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHhhHHHHHHHHHHH
Confidence 9999999988876553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=194.30 Aligned_cols=337 Identities=16% Similarity=0.067 Sum_probs=212.1
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhh----hhcc-hhhhhHHHHHHHHHHHhhhhhh------hHHHHHHHHH
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTR----ALGR-KVSILIGGVAFLAGSALGGSAF------NIYMLIFGRL 92 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~~~~~~~~~~i~~~~~~~~~------~~~~l~~~r~ 92 (463)
+.+|++..++|.+..+..+..++..|+.|.++| |+|| |+.++.+....+++..+.-..+ .+..+++..+
T Consensus 35 ~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~ 114 (473)
T PRK10429 35 DVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYI 114 (473)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 345889999999999999999999999999999 6699 5667778888777765554432 2345666667
Q ss_pred HhhcccccccchhhHHhhhcC-CCCcccchhhhhhHHHHHHHHHHHHhhhhh----cccCCcchhHHHHHhhHHHHHHHH
Q 012438 93 LLGVGIGFGNQSVPLYLSEMA-PPKYRGTFNIGFQLCGAIGVLSANLLNYGT----QKIKGGWGWRISLAMAAAPASILT 167 (463)
Q Consensus 93 l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~----~~~~~~~gwr~~f~~~~~~~~~~~ 167 (463)
+.+++.........++..|.. ++++|.+..+.-..+.++|..+.+.+...+ ....+..+|+....+.+++.++..
T Consensus 115 l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~ 194 (473)
T PRK10429 115 LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST 194 (473)
T ss_pred HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 778888888888889999998 589999988887777777755554443221 111222468888877777766655
Q ss_pred HHhhc-CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHH
Q 012438 168 IGAIF-LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQ 246 (463)
Q Consensus 168 ~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (463)
+..++ .+|.++....+. +++.+.++++.++...+++.+..+....+.
T Consensus 195 ~~~~~~~~e~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~ 242 (473)
T PRK10429 195 IITLRNVHEVYSSDNQVS--------------------------------AEGSHLTLKDIVALIYKNDQLSCLLGMALA 242 (473)
T ss_pred HHHHcCceecCCcccccc--------------------------------ccccCCCHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55444 666531100000 001122334433322222333333333333
Q ss_pred hhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhh
Q 012438 247 QVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQL 326 (463)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (463)
..........+.+++.+....+..... .......++.+++.++.+++.||+|+|+.+..+..+..++.+.+......
T Consensus 243 ~~~~~~~~~~~~~y~~~y~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~-- 319 (473)
T PRK10429 243 YNIASNIINGFAIYYFTYVIGDADLFP-YYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA-- 319 (473)
T ss_pred HHHHHHHHhhheeeEEEEECCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 334444445555555555443433333 55566668889999999999999999999887776655554443322100
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCC-------cccccchhHHHHHHHHHHHHHHHhhhhhhhh
Q 012438 327 GDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFLFTFLTAQTFLPMLC 399 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 399 (463)
.....+..++...+.+.+.+.. .+..+++.+|..+ .+..|..+|..++...++..+++.+.|.+.+
T Consensus 320 ------~~~~~~~~~i~~~l~g~~~~~~-~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 320 ------APHNALLIVIAGILLNIGTALF-WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred ------CchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333333333444443333 2445566677754 3445668899999999999999999999887
Q ss_pred ccc
Q 012438 400 HFK 402 (463)
Q Consensus 400 ~~~ 402 (463)
..|
T Consensus 393 ~~G 395 (473)
T PRK10429 393 LIG 395 (473)
T ss_pred HcC
Confidence 655
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=182.98 Aligned_cols=382 Identities=13% Similarity=0.063 Sum_probs=246.4
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhh----hhcchhhhhHH-HHHHHHHHHhhhhhhhHH-------------
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTR----ALGRKVSILIG-GVAFLAGSALGGSAFNIY------------- 85 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~~~~~~~~~~~~------------- 85 (463)
+++|.+..+.+++..+..+...+.+++.|+++| |+||||.++++ .....++.++.+++++.+
T Consensus 32 ~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~ 111 (477)
T TIGR01301 32 QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKP 111 (477)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchh
Confidence 345889999999999999999999999999999 59999988774 666666767777766643
Q ss_pred ----HHHHHHHHhhcccccccchhhHHhhhcCCCCcc--cchhhhhhHHHHHHHHHHHHhhhhhc--cc----CCc----
Q 012438 86 ----MLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYR--GTFNIGFQLCGAIGVLSANLLNYGTQ--KI----KGG---- 149 (463)
Q Consensus 86 ----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~~~--~~----~~~---- 149 (463)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++++.+++... .. ...
T Consensus 112 ~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~ 191 (477)
T TIGR01301 112 RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGV 191 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccc
Confidence 223333344457777888899999999998865 57999999999999999999987641 11 000
Q ss_pred --chhHHHHHhhHHHHHHHHHHhhc-CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhh
Q 012438 150 --WGWRISLAMAAAPASILTIGAIF-LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKN 226 (463)
Q Consensus 150 --~gwr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (463)
.+.|+.|++.++..++..+...+ .+|.|....+..+ +++ .+ +.++.+....+++
T Consensus 192 ~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~-~~~-------~~---------------~~~~~~~~~~~~~ 248 (477)
T TIGR01301 192 SCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI-NSE-------AA---------------PPSKHGEEAFFGE 248 (477)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch-hhh-------cc---------------cccccchhhhHHH
Confidence 26789999988887777666655 8887631100000 000 00 0000001122334
Q ss_pred hhcc-cchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHH--cCCCCc------hh---HHHHHHHHHHHHHHHHHHHHHH
Q 012438 227 IAQR-KYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRT--LKLGES------TS---LLLSALVAGGMGTVFAIVSMIL 294 (463)
Q Consensus 227 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~---~~~~~~~~~~~~~~~~~~~g~l 294 (463)
+++. +..++..+.+++..++.+.+...+..|.+.++.+ ++.++. +. +.+.....++...+.+++..++
T Consensus 249 i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l 328 (477)
T TIGR01301 249 LFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKL 328 (477)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4331 2234445555566666667777788887777653 222211 11 2244455666666777888899
Q ss_pred HhhcCC-chhhhHhhHHHHHHHHHHHHHHHhhhCC-C-----C--CCcchhHHHHHHHHHHHhhhhhccccceecccccc
Q 012438 295 ADKFGR-KVLFLVGGIQMLVSQVMIGSIMAAQLGD-H-----G--GFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSE 365 (463)
Q Consensus 295 ~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (463)
.+|+|+ |+...++.++.++++....+........ . . ..+....+..+..+...+..++.. ..++++++++
T Consensus 329 ~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~-~siPfal~s~ 407 (477)
T TIGR01301 329 CRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT-YSIPFALASI 407 (477)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH-HHHhHHHHHH
Confidence 999985 6666777777777776665542110000 0 0 000111345555566666665544 4577888888
Q ss_pred cCCc--ccccchhHHHHHHHHHHHHHHHhhhhhhhhccc---chhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012438 366 IFPL--EIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK---AGIFFFFGGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 366 ~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (463)
..|+ +..|..+|+.|.+..+...+.....|.+.+..+ ...+.+-++..++.+++..+.+|++++
T Consensus 408 ~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 408 RSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8884 556999999999999999999988888666655 233444444445566666777787654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-22 Score=185.52 Aligned_cols=347 Identities=9% Similarity=-0.106 Sum_probs=213.5
Q ss_pred CccccCchhHHHH--HHHHHHHHHHHHHHHH-hhhhhhcchhhhhHHHHHH-HHHHHh---hhhhhh-HHHHHHHHHHhh
Q 012438 24 NYCKFDSQLLTTF--TSSLYITGILGSLIAS-SVTRALGRKVSILIGGVAF-LAGSAL---GGSAFN-IYMLIFGRLLLG 95 (463)
Q Consensus 24 ~~~~~s~~~~~~~--~s~~~~~~~i~~~~~g-~l~dr~Grr~~~~~~~~~~-~i~~~~---~~~~~~-~~~l~~~r~l~G 95 (463)
+|.|.|.+++|.+ .+.+.+...+.+++++ +..||+||||..++...+. ...... .....+ ...++..-++.+
T Consensus 29 ~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (390)
T TIGR02718 29 REDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACAS 108 (390)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 4448899999997 4677888888888884 4799999998875554332 211111 112222 334445556666
Q ss_pred cccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCC
Q 012438 96 VGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPE 175 (463)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 175 (463)
+..+...+....+..|..++++++...+....+..+|.++++.....+.+. .|||..|++.++..++..+..++++|
T Consensus 109 ~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~---~gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 109 LASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK---FGQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 777777888888889999888888888888888899999998776555443 47999999999888776666655544
Q ss_pred ChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHH
Q 012438 176 TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVG 255 (463)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (463)
+++. ++++.++ ...++++.+|++..+. .....+..........
T Consensus 186 ~~~~---~~~~~~~------------------------------~~~~~~~~l~~~~~~~----~~~~~~l~~~~~~~~~ 228 (390)
T TIGR02718 186 RAVA---SPEAPLA------------------------------RRASLFRFFRRPLAWS----LLALALLSAMTAVSGF 228 (390)
T ss_pred CCcC---ccccchh------------------------------hHHHHHHHHcCcCHHH----HHHHHHHHHHHHHHHH
Confidence 3210 0000000 0012333333332221 2222222223344455
Q ss_pred hhHHHHHHHcCCCCchhHHHHHHHHH-HHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcc
Q 012438 256 LYSPVLFRTLKLGESTSLLLSALVAG-GMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSE 334 (463)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (463)
.+.+.++++.|++.++.+ ......+ ...+++.++.|++.||+|+|+.+..+..+.++..+...... . .. ..
T Consensus 229 ~~~~~~l~~~G~s~~~ig-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~-~--~~----~~ 300 (390)
T TIGR02718 229 GLSKLYLVDAGWPLEWIG-RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQA-A--FW----LA 300 (390)
T ss_pred HHhhHHHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-H--cc----cC
Confidence 567778888898888777 5555544 46677889999999999999988876665533322222111 0 00 00
Q ss_pred hhHHHHHHHHHHHhhhhhccccceecccccccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHH
Q 012438 335 GYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPL-EIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLV 413 (463)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (463)
...........+.....+... +.......+..++ +.+++.+++.+...++|..++|.+.|.+.|..++...+..++++
T Consensus 301 ~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~ 379 (390)
T TIGR02718 301 PGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVL 379 (390)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 111121222222222222222 2222333344554 88999999999999999999999999999998876665555555
Q ss_pred HHHHHH
Q 012438 414 LIMTTF 419 (463)
Q Consensus 414 ~~~~~~ 419 (463)
.+.+.+
T Consensus 380 ~l~a~~ 385 (390)
T TIGR02718 380 AVLAIL 385 (390)
T ss_pred HHHHHH
Confidence 444433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=174.29 Aligned_cols=328 Identities=16% Similarity=0.071 Sum_probs=225.1
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhc-chhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccch
Q 012438 26 CKFDSQLLTTFTSSLYITGILGSLIASSVTRALG-RKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 26 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 104 (463)
.|+|..|+|.+.+...+...++++++|.++||++ +|+++.+..++.++........++++.+++.-++..+......|.
T Consensus 32 ~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl 111 (400)
T PF03825_consen 32 RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPL 111 (400)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHH
Confidence 3789999999999999999999999999999986 567887877877777777778889998888888888888888888
Q ss_pred hhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHh-hhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhh
Q 012438 105 VPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLL-NYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSIIQR 183 (463)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 183 (463)
..++..+... ++++-.+-.....++|.+++... +..+....+..+..+.+++.+..+++.....+.+|+.|+....+
T Consensus 112 ~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~ 189 (400)
T PF03825_consen 112 SDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAK 189 (400)
T ss_pred HHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccccccC
Confidence 8888888875 44555677777777777777543 12222222212334556666666666555566688776211110
Q ss_pred CCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHH
Q 012438 184 SNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFR 263 (463)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (463)
++ .++....+..+++|++. +....+..+...........|.+.+++
T Consensus 190 ~~------------------------------~~~~~~~~~~~llk~~~----~~~Fll~~~l~~~~~~~~~~f~~~yl~ 235 (400)
T PF03825_consen 190 ES------------------------------VKKLLGLDALKLLKNPR----FLVFLLAAFLIGISHAAYYTFFSIYLQ 235 (400)
T ss_pred CC------------------------------cccccchHHHHHhcCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000111122333322 222333333334455667778888999
Q ss_pred HcCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHH
Q 012438 264 TLKL-GESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILV 342 (463)
Q Consensus 264 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (463)
+.|. +....+ ....+..++.++.-...+++.+|+|.|+++.++.+..++=..++.... ++ .+....
T Consensus 236 ~~gg~~~~~~g-~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-----------~~-~~~~~~ 302 (400)
T PF03825_consen 236 ELGGYSGSTIG-ILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-----------DP-WPFIVA 302 (400)
T ss_pred HcccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-----------CC-cHHHHH
Confidence 9884 444444 677788889999999999999999999999999888888777766541 11 111111
Q ss_pred H----HHHHhhhhhccccceecccccccCCcccccchhHHHHHH-HHHHHHHHHhhhhhhhhcccc
Q 012438 343 M----VCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAV-NFLFTFLTAQTFLPMLCHFKA 403 (463)
Q Consensus 343 ~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~ 403 (463)
. ..+.+..++..+ .....++++..|++.|+++.++.+.. ..+|..++..+.|.+.|+.+.
T Consensus 303 ~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 303 LQLLGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred HHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 1 223455444433 34456668999999999999998876 569999999999999998873
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=185.78 Aligned_cols=331 Identities=15% Similarity=0.071 Sum_probs=206.6
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh----hcch-hhhhHHHHHHHHHHHhhhhhhh------HHHHHHHH
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRA----LGRK-VSILIGGVAFLAGSALGGSAFN------IYMLIFGR 91 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r 91 (463)
.+++|++..++|.+.++..+..++..|+.|.++|| +||| +.++.+.+..+++.++....++ ++.+++..
T Consensus 37 t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~ 116 (444)
T PRK09669 37 TDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTY 116 (444)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 44569999999999999999999999999999998 7874 5566777777777665544432 45566666
Q ss_pred HHhhcccccccchhhHHhhhcC-CCCcccchhhhhhHHHHHHHHHHHHhhhhhccc----CCcchhHHHHHhhHHHHHHH
Q 012438 92 LLLGVGIGFGNQSVPLYLSEMA-PPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKI----KGGWGWRISLAMAAAPASIL 166 (463)
Q Consensus 92 ~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~gwr~~f~~~~~~~~~~ 166 (463)
++.+.+......+..++.+|+. ++++|.+..+....+..+|..+++.+...+... ....+|+..+.+.++++++.
T Consensus 117 ~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~ 196 (444)
T PRK09669 117 ILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL 196 (444)
T ss_pred HHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 6777666667777788999998 568899888888888888877776544322211 11358999988888877766
Q ss_pred HHHhhc-CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHH
Q 012438 167 TIGAIF-LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFF 245 (463)
Q Consensus 167 ~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (463)
.+..++ .+|.++.. +++ +++..+.+++.++++. ++......+
T Consensus 197 ~~~~~~~~~e~~~~~--~~~-------------------------------~~~~~~~~~~~~~n~~----~~~l~~~~~ 239 (444)
T PRK09669 197 FFCCFFMTKERYTPE--VDN-------------------------------SSSVWKDLKLLLGNSQ----WRIMFIFNV 239 (444)
T ss_pred HHHHhCCeEEecCCC--CcC-------------------------------CCCHHHHHHHHhCCch----HHHHHHHHH
Confidence 655444 45432100 000 0000112333333332 222222222
Q ss_pred HhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhh
Q 012438 246 QQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQ 325 (463)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (463)
.............+++.+..... ............+..+++.++.+++.||+|+|+....+.....+..+.+.+.
T Consensus 240 ~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~---- 314 (444)
T PRK09669 240 VLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI---- 314 (444)
T ss_pred HHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh----
Confidence 22222222223333333333222 2333245555567778888999999999999998887766555433322221
Q ss_pred hCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCC-------cccccchhHHHHHHHHHHHHHHHhhhhhhh
Q 012438 326 LGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFLFTFLTAQTFLPML 398 (463)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 398 (463)
+.++.+...+...+.+.+.+.. .+..+++.+|..+ .+..|..+|..+++..+|..+++.+.|.+.
T Consensus 315 -------~~~~~~~~~~~~~i~g~~~~~~-~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 315 -------PPSNVWLIFALNILFNFIQNLT-TPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred -------CcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333444444445444433 4566777777764 334567789999999999999999999988
Q ss_pred hcccc
Q 012438 399 CHFKA 403 (463)
Q Consensus 399 ~~~~~ 403 (463)
+..|+
T Consensus 387 ~~~Gy 391 (444)
T PRK09669 387 AWVDY 391 (444)
T ss_pred HHcCC
Confidence 87653
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-21 Score=182.22 Aligned_cols=358 Identities=12% Similarity=0.031 Sum_probs=205.6
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hcchhhhhHHHHHHHHHHHhhhhhh-hHHHHHHHHHHhhccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRA-LGRKVSILIGGVAFLAGSALGGSAF-NIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~ 100 (463)
++++|++..+.+++.+.+........+++|+++|| +|||+.++.+.++.+++..++++++ +.+.+.++|+++|+|.|.
T Consensus 49 ~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~ 128 (500)
T PRK09584 49 VKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGL 128 (500)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhc
Confidence 45678899999999888876766777899999999 5999999999999999999998874 566777899999999999
Q ss_pred ccchhhHHhhhcCCCCc--ccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhh----cCC
Q 012438 101 GNQSVPLYLSEMAPPKY--RGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAI----FLP 174 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~----~~~ 174 (463)
..+...+++.|++|+++ |..+.++++.+.++|..++|.+++++.+. .|||+.|++.++..++..+... .++
T Consensus 129 ~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~---~g~~~~F~i~~i~~~i~~i~~~~~~~~~~ 205 (500)
T PRK09584 129 FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK---YGWSVAFALSVVGMLITVVNFAFCQRWVK 205 (500)
T ss_pred ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 99999999999998654 45678899999999999999998887653 4799999998765444333222 233
Q ss_pred CChHHHHhhCCcHHHHHHH----------HHHH-hCchhHHHHHHH--HHHHhhcccccCCchhhhhcccchhhHHHHHH
Q 012438 175 ETPNSIIQRSNDHQKAQKM----------LQRV-RGIADVEAELND--LIRASSISKSITHPFKNIAQRKYRPQLVMAIL 241 (463)
Q Consensus 175 e~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (463)
|.++....++.+..+.... .... ...+.......- ........+.. ... ++..+++.+..+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~ 280 (500)
T PRK09584 206 QYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEA-FAM----KGAARRKMIVAFI 280 (500)
T ss_pred cCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-hhc----CHHHHHHHHHHHH
Confidence 3211000000001110000 0000 000000000000 00000000000 000 0011222222221
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHH-----cC---CCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCchhhhHhhH
Q 012438 242 IPFFQQVTGINIVGLYSPVLFRT-----LK---LGESTSLLLSALVAGGMGTVFAIVSMILADK----FGRKVLFLVGGI 309 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~~~ 309 (463)
+. . ....++......+..+.. .. .+.......+..+..+..++..++..++-+| .+..+.+.++.+
T Consensus 281 ~~-~-~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~ 358 (500)
T PRK09584 281 LM-L-EAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMV 358 (500)
T ss_pred HH-H-HHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHH
Confidence 11 1 111222222333333221 11 0111112255566666666666666444444 444566777778
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHH
Q 012438 310 QMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFL 389 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 389 (463)
+.+++.+.+...... .+. ....+.++.+....+.+.+- ....|....++.+..|++.||.++|+......+|..+
T Consensus 359 l~~l~f~~l~~~~~~--~~~--~~~vs~~~~~~~~~l~~~ge-~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~ 433 (500)
T PRK09584 359 LCSGAFLVLPLGAKF--AND--AGIVSVNWLIASYGLQSIGE-LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALI 433 (500)
T ss_pred HHHHHHHHHHHHHHh--cCC--CCccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 888777776553211 000 01122333444444444443 3345777777789999999999999888777777777
Q ss_pred HHhhhh
Q 012438 390 TAQTFL 395 (463)
Q Consensus 390 ~~~~~~ 395 (463)
+..+.+
T Consensus 434 ~g~~~~ 439 (500)
T PRK09584 434 AGYVAN 439 (500)
T ss_pred HHHHHH
Confidence 766664
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=178.52 Aligned_cols=331 Identities=16% Similarity=0.183 Sum_probs=235.5
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhh----hhcchh-hhhHHHHHHHHHHHhhhhh-h-------hHHHHHHH
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTR----ALGRKV-SILIGGVAFLAGSALGGSA-F-------NIYMLIFG 90 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~-~~~~~~~~~~i~~~~~~~~-~-------~~~~l~~~ 90 (463)
+.+|+++...|.+..+..+..++..|+.|.++| |+|||| .++.+....+++.+++... + ....+.+.
T Consensus 30 ~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~ 109 (428)
T PF13347_consen 30 DVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVF 109 (428)
T ss_pred HHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHH
Confidence 445889999999999999999999999999999 899765 4556778888887777665 4 23445777
Q ss_pred HHHhhcccccccchhhHHhhhcCC-CCcccchhhhhhHHHHHHHHHHHHhhhhhcccCC-c---chhHHHHHhhHHHHHH
Q 012438 91 RLLLGVGIGFGNQSVPLYLSEMAP-PKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKG-G---WGWRISLAMAAAPASI 165 (463)
Q Consensus 91 r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~---~gwr~~f~~~~~~~~~ 165 (463)
-++..++.........++..|..+ +++|.+..+.-..+..+|.++...+...+....+ . .+|++..++.+++.++
T Consensus 110 ~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v 189 (428)
T PF13347_consen 110 YILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLV 189 (428)
T ss_pred HHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHH
Confidence 777789999999999999999997 5789999999999889988766555544433222 1 2799999998888887
Q ss_pred HHHHhhc-CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHH
Q 012438 166 LTIGAIF-LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPF 244 (463)
Q Consensus 166 ~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (463)
..+...+ .+|.++. . ++ ++++.+.++.++++++++ .+..+....
T Consensus 190 ~~~i~~~~~ke~~~~-----~--~~------------------------~~~~~~~~~~~~~~~~nr----~~~~l~~~~ 234 (428)
T PF13347_consen 190 FFLITFFFVKERSVE-----V--TE------------------------QEKKISLRDSLRSLFRNR----PFRILLLAF 234 (428)
T ss_pred Hhhhhhheeeecccc-----c--cc------------------------cccccccccchhhhcccc----hHHHHHHHH
Confidence 7776655 6772110 0 00 000111123344444332 233333344
Q ss_pred HHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHh
Q 012438 245 FQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAA 324 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (463)
+.............+++.+..-.++.... .......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+..
T Consensus 235 ~~~~~~~~~~~~~~~y~~~~vl~~~~~~~-~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-- 311 (428)
T PF13347_consen 235 FLQWLAFALMNTFLPYYFTYVLGNEGLIS-IFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG-- 311 (428)
T ss_pred HHHHhhhhhhhhHHHHHHHHHhcCchhhH-HHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH--
Confidence 44444555555666777766444444444 667778888999999999999999999999999999888888776651
Q ss_pred hhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCC-------cccccchhHHHHHHHHHHHHHHHhhhhhh
Q 012438 325 QLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFLFTFLTAQTFLPM 397 (463)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 397 (463)
.++.+...+...+.+.+.+..+ ...+++.+|..+ ++..|..+|+.++...++..+++.+.+.+
T Consensus 312 ---------~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 312 ---------PGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred ---------hhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 1345556666666666665443 566677788776 34568999999999999999999999988
Q ss_pred hhccc
Q 012438 398 LCHFK 402 (463)
Q Consensus 398 ~~~~~ 402 (463)
.+..|
T Consensus 382 l~~~G 386 (428)
T PF13347_consen 382 LALVG 386 (428)
T ss_pred HHHhC
Confidence 77654
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-19 Score=167.87 Aligned_cols=366 Identities=17% Similarity=0.147 Sum_probs=239.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhH-HHHHHHHHHHhhhhh--hhHHHHHHHHHHhhcccccccchhh
Q 012438 30 SQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILI-GGVAFLAGSALGGSA--FNIYMLIFGRLLLGVGIGFGNQSVP 106 (463)
Q Consensus 30 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~ 106 (463)
.+..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++.+..+. .+++...+.-++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999999998766554 445555566666663 3445555555666677778888899
Q ss_pred HHhhhcCCCCcc--------------------------cchhhhhhHHHHHHHHHHHHhhhhhcccCC-----cchhHHH
Q 012438 107 LYLSEMAPPKYR--------------------------GTFNIGFQLCGAIGVLSANLLNYGTQKIKG-----GWGWRIS 155 (463)
Q Consensus 107 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~~gwr~~ 155 (463)
+++.|..+++++ ++..+.-.....+|.++...+...+....+ ..+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999888 899988888888888888777655432222 1346888
Q ss_pred HHhhHHHHHHHHHHh-hcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchh
Q 012438 156 LAMAAAPASILTIGA-IFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRP 234 (463)
Q Consensus 156 f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (463)
+.+.++.-++..+.. +++||.|+....++. ..-.+...+++ ...++++ ++.
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~-~~~~~~g~~~l-----------------------~~t~k~~----~~~ 280 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSG-SSYLRFGFKRL-----------------------WRTFKEI----RKL 280 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc-hhHHHHHHHHH-----------------------HHHHHHH----HhC
Confidence 888888766655544 558887642111100 00011111110 1112222 222
Q ss_pred hHHHHHHHHHHHhhhhhhHHHhhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--hhhhHhhHHH
Q 012438 235 QLVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRK--VLFLVGGIQM 311 (463)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~ 311 (463)
+.....++..++..-+.+.+......+.+ .++++..+.. .+.....+.+++|+++.+++.||+|.| +.+..+.+..
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~-~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLI-VFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW 359 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 33333455555555667777777777765 6899988877 888888999999999999999999998 6666655555
Q ss_pred HHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHH
Q 012438 312 LVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTA 391 (463)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 391 (463)
.+..+...+-... ... .....+...+...+.+...+ ...+...++.+|+.|+++.+..+|++...+...+.++|
T Consensus 360 ~~i~~~g~~G~~~--~~~---g~~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGP 433 (477)
T PF11700_consen 360 IIIPLYGLFGFWP--SFF---GLKSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGP 433 (477)
T ss_pred HHHHHHHHHHhhh--ccc---CcccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 3322222110000 000 11223334444444444433 33466777889999999999999999999999999999
Q ss_pred hhhhhhhhccc-chhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012438 392 QTFLPMLCHFK-AGIFFFFGGLVLIMTTFMHFFLPETKNV 430 (463)
Q Consensus 392 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (463)
.+++.+.+..+ ...-+....+.++++++++..++.+|++
T Consensus 434 ll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 434 LLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence 99999999987 4444445555556666666666655443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-20 Score=166.74 Aligned_cols=333 Identities=18% Similarity=0.165 Sum_probs=236.0
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh----hcch-hhhhHHHHHHHHHHHhhhhhhh------HHHHHHHHH
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRA----LGRK-VSILIGGVAFLAGSALGGSAFN------IYMLIFGRL 92 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~ 92 (463)
+.+|+++..+|.+..+.-+--++.-|+.|.+.|| +||+ +.++.+.+..++.+.++-.+++ ....++.-+
T Consensus 41 dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~ 120 (467)
T COG2211 41 DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM 120 (467)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence 3458899999999999999999999999999995 7875 5667787888888888877763 455666778
Q ss_pred HhhcccccccchhhHHhhhcCC-CCcccchhhhhhHHHHHHHHHHHHhhhhhcccCC----cchhHHHHHhhHHHHHHHH
Q 012438 93 LLGVGIGFGNQSVPLYLSEMAP-PKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKG----GWGWRISLAMAAAPASILT 167 (463)
Q Consensus 93 l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~gwr~~f~~~~~~~~~~~ 167 (463)
+.+++......+-.++..|..+ ++||.+..+.-+.+.++|.++...+...+....+ ..||+....+.++++++..
T Consensus 121 l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~ 200 (467)
T COG2211 121 LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL 200 (467)
T ss_pred HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHH
Confidence 8899999888888999999985 7899999999999999997666555433322221 3589999888888888877
Q ss_pred HHhhc-CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHH
Q 012438 168 IGAIF-LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQ 246 (463)
Q Consensus 168 ~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (463)
+..++ .+|.+... .+ .++..+.++++.+....+++.+...++..++
T Consensus 201 l~~~~~v~ER~~~~---~~------------------------------~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~ 247 (467)
T COG2211 201 LFCFFNVKERVVET---QP------------------------------TKTGVKLKLKDSFLLIFKNRPLLLLLLMNLL 247 (467)
T ss_pred HHHHHHhhcccCcc---cc------------------------------CcccccccHHHHHHHHHccchHHHHHHHHHH
Confidence 77776 66655210 00 0001122333222222222333333445555
Q ss_pred hhhhhhHHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhh
Q 012438 247 QVTGINIVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQ 325 (463)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (463)
...+.+.......+|.+. .+.++.... ..........+++.++..++.+|+|+|+++.++.++..++.+.+.+.
T Consensus 248 ~~~~~~i~~s~~~yy~~y~lg~~~l~~~-~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~---- 322 (467)
T COG2211 248 LFIAFNIRGSIMVYYVTYVLGDPELFAY-LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT---- 322 (467)
T ss_pred HHHHHHHHhhhhheeEEEEcCChHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh----
Confidence 555666666666666654 333333333 56666666777779999999999999999999999988888888775
Q ss_pred hCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCC-------cccccchhHHHHHHHHHHHHHHHhhhhhhh
Q 012438 326 LGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFLFTFLTAQTFLPML 398 (463)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 398 (463)
+.++.++.++..++.+.+.+.. .++.|++++|... .+..|...|...++.-+|..++..+.|+..
T Consensus 323 -------~~~~~~l~~~~~~i~~~g~~~~-~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 323 -------PAGSVVLIVVALIIAGVGTGIA-NPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred -------cCcchHHHHHHHHHHHHHhhcc-ccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233455555555555555544 5788888888753 345688899999999999999999999988
Q ss_pred hccc
Q 012438 399 CHFK 402 (463)
Q Consensus 399 ~~~~ 402 (463)
+..|
T Consensus 395 ~~~G 398 (467)
T COG2211 395 GAIG 398 (467)
T ss_pred HHcC
Confidence 8765
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-21 Score=183.72 Aligned_cols=380 Identities=11% Similarity=-0.009 Sum_probs=230.7
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhc-----chhhhhHHHHHH-HHHHHhhhhhhhHHHHH-HHH
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALG-----RKVSILIGGVAF-LAGSALGGSAFNIYMLI-FGR 91 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~-~i~~~~~~~~~~~~~l~-~~r 91 (463)
.+-+++++|+|+++++...+...+...+-.+ +|+++||++ ||+.++++.++. .++....+..++..... +.+
T Consensus 49 ~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 127 (468)
T TIGR00788 49 SPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFI 127 (468)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 4445677899999999999999999999766 999999998 777777777666 34444444445544444 488
Q ss_pred HHhhcccccccchhhHHhhhcCCCCcccchhhhhh---HHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHH
Q 012438 92 LLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQ---LCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTI 168 (463)
Q Consensus 92 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~---~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~ 168 (463)
++.+++.+...++..+++.|..+ +++....+... ...++|.++++.+++.+.+. .+||..|++.+.+.++..+
T Consensus 128 ~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~---~~~~~~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 128 FLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK---TLTRILFLITAALLLLQLF 203 (468)
T ss_pred HHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999998 55544433333 33458999999888876654 4799999998888877766
Q ss_pred HhhcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhh
Q 012438 169 GAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQV 248 (463)
Q Consensus 169 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (463)
...+++|+++....+.+ ++........ .....+ ..++.++++.+...++.....+...++...
T Consensus 204 ~~~~~~E~~~~~~~~~~--~~~~~~~~~~------~~~~~~---------~~~~~~~~l~~~l~~~~i~~~l~fifl~~~ 266 (468)
T TIGR00788 204 VSNLSKERRAFVRPRIG--TYLEMNMALL------TLGVLA---------NVKVQILGLRGAIQLLEIAKPLIFIFLSYA 266 (468)
T ss_pred HHHhccccccccccccc--ccchhhhhhh------hhhHHH---------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHh
Confidence 66678886411000000 0000000000 000000 000011111111111222221222121011
Q ss_pred hhhhHH-HhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhC
Q 012438 249 TGINIV-GLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLG 327 (463)
Q Consensus 249 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (463)
...... ..+. ...+..|+++...+ ......+++.+++..+.+++.+|++.|+.+.++.++.+++.+......... .
T Consensus 267 ~~~~~~~~~f~-~~~~~lG~s~~~~G-~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~-~ 343 (468)
T TIGR00788 267 NLPGASGSVFC-ATTQCLPGGPSFSG-MSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRW-N 343 (468)
T ss_pred hcCCCCceeEE-EEcccCCCCcchhh-hHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecc-c
Confidence 111111 1111 11245788888887 777888899999999999999999999998888877777654432111000 0
Q ss_pred CCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc-----
Q 012438 328 DHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK----- 402 (463)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~----- 402 (463)
.... .+..+.......+...+.+..+.|. ..++++..|++.+|+..++.+.+.++|..+++.+.+.+.+..|
T Consensus 344 ~~~g--i~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~ 420 (468)
T TIGR00788 344 LAFG--ISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDN 420 (468)
T ss_pred cccC--CCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 0000 0112222333334444444444455 4555799999999999999999999999999999999988877
Q ss_pred chhHHHHHHHHHH---HHHHHHHhcCC
Q 012438 403 AGIFFFFGGLVLI---MTTFMHFFLPE 426 (463)
Q Consensus 403 ~~~~~~~~~~~~~---~~~~~~~~~~~ 426 (463)
+...+....++.+ +.+....++|+
T Consensus 421 ~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 421 SNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4444444333333 33333345665
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=171.69 Aligned_cols=328 Identities=11% Similarity=0.009 Sum_probs=197.1
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh----hcch-hhhhHHHHHHHHHHHhhhhhhh------HHHHHHHHH
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRA----LGRK-VSILIGGVAFLAGSALGGSAFN------IYMLIFGRL 92 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~ 92 (463)
+.+|+++..+|.+..+.-+--++..|+.|.++|| +||| +.++++.+..+++.+++-..++ ...+.+.-+
T Consensus 38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT 117 (460)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 3458899999999999999999999999999996 7986 4555677777777766654442 344566666
Q ss_pred HhhcccccccchhhHHhhhcCC-CCcccchhhhhhHHHHHHHHHHHHhhhhhcccC----CcchhHHHHHhhHHHHHHHH
Q 012438 93 LLGVGIGFGNQSVPLYLSEMAP-PKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK----GGWGWRISLAMAAAPASILT 167 (463)
Q Consensus 93 l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~gwr~~f~~~~~~~~~~~ 167 (463)
+..++......+-.++..|..+ ++||.+..++...+..+|..+++.+...+.... ...+|+....+.+++.+++.
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 7788888888888899999987 789999999999999998877766643322211 12478888877777766665
Q ss_pred HHhhc-CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHH
Q 012438 168 IGAIF-LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQ 246 (463)
Q Consensus 168 ~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (463)
...++ .+|.++. +++ + .+.++.++..++++. +..+....+.
T Consensus 198 ~i~~~~~kE~~~~---~~~---~----------------------------~~~~~~l~~~~~Nk~----~~~l~~~~~~ 239 (460)
T PRK11462 198 AFCFFTTKERVEA---PPT---T----------------------------TSMREDLRDIWQNDQ----WRIVGLLTIF 239 (460)
T ss_pred HHHHhcceeccCC---Ccc---C----------------------------CCHHHHHHHHhCChH----HHHHHHHHHH
Confidence 55444 4553210 000 0 000111222222222 2222222222
Q ss_pred hhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhh
Q 012438 247 QVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQL 326 (463)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (463)
.............++.+....+..... .......+..+++.+++++++||+++|+....+..+..+..+.+.+.
T Consensus 240 ~~~~~~~~~~~~~y~~~y~~g~~~~~~-~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~----- 313 (460)
T PRK11462 240 NILAVCVRGGAMMYYVTWILGTPEVFV-AFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV----- 313 (460)
T ss_pred HHHHHHHHHhHhhhhhhhhcCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----
Confidence 222222222233333333332323222 55667778888999999999999999988765544433333322221
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCC-------cccccchhHHHHHHHHHHHHHHHhhhhhhhh
Q 012438 327 GDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFLFTFLTAQTFLPMLC 399 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 399 (463)
+...........++.+.+.+ ...++.+.+.+|..+ .+..|..++...+...+|..+++.+.|.+.+
T Consensus 314 ------~~~~~~~~~~~~~l~g~~~~-~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 314 ------PMQASITMFVFIFVIGVLHQ-LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred ------chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222333333332 223444555566544 2333555577778899999999999888876
Q ss_pred ccc
Q 012438 400 HFK 402 (463)
Q Consensus 400 ~~~ 402 (463)
..|
T Consensus 387 ~~G 389 (460)
T PRK11462 387 YGG 389 (460)
T ss_pred HcC
Confidence 644
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-19 Score=165.23 Aligned_cols=359 Identities=11% Similarity=0.049 Sum_probs=201.9
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-cchhhhhHHHHHHHHHHHhhhhhh-hHHHHHHHHHHhhcccccc
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRAL-GRKVSILIGGVAFLAGSALGGSAF-NIYMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~~ 101 (463)
+++|++..+.+.+.+.+.....++++++|+++||+ ||||+++++.++.+++.++.+..+ +...+.++..+.++|.|..
T Consensus 38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~ 117 (493)
T PRK15462 38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLF 117 (493)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccc
Confidence 34688999999999999999999999999999999 999999999999999988776543 2233444444555666777
Q ss_pred cchhhHHhhhcCCCC--cccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHH
Q 012438 102 NQSVPLYLSEMAPPK--YRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNS 179 (463)
Q Consensus 102 ~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~ 179 (463)
.+...++++|.+|++ +|....++.+.+.++|..++|.+.+.+.+. .|||+.|.+.++..++..+..++..+....
T Consensus 118 ~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~---~Gw~~~F~iaaigm~l~li~~~~~~~~l~~ 194 (493)
T PRK15462 118 KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE---YSWAMGFGLAAVGMIAGLVIFLCGNRHFTH 194 (493)
T ss_pred cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh---hChHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 788889999999875 689999999999999999999998877553 579999998766444433333322111000
Q ss_pred H-HhhCCcHHHHHHHHHHHhCchhH--------H-HHHH-HHHHHh------h----cccccCCchhhhhcccchhhHHH
Q 012438 180 I-IQRSNDHQKAQKMLQRVRGIADV--------E-AELN-DLIRAS------S----ISKSITHPFKNIAQRKYRPQLVM 238 (463)
Q Consensus 180 ~-~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~-~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~ 238 (463)
. ..++++.++ ++........-.. . .... +..... . --.-...+. ++.-++|...
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~er~r~~~ 269 (493)
T PRK15462 195 TRGVNKKVLRA-TNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAE----NQKQRKELGL 269 (493)
T ss_pred CCCCCCCCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHhhHHH
Confidence 0 000000100 0000000000000 0 0000 000000 0 000000000 0001122221
Q ss_pred --HHHHHHHHhhhhhhHHHhhHHHHHHH------cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC--ch-----h
Q 012438 239 --AILIPFFQQVTGINIVGLYSPVLFRT------LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR--KV-----L 303 (463)
Q Consensus 239 --~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~-----~ 303 (463)
.+.+.....+..+.-...-+..+.++ .|+. -... +..++..+..++.+++..++-.|..| |. -
T Consensus 270 ~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~-~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~K 347 (493)
T PRK15462 270 IVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTA-MFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGK 347 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHH-HHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH
Confidence 11111111222222112222223322 1222 2233 56677777777777777777666632 21 2
Q ss_pred hhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHH
Q 012438 304 FLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVN 383 (463)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 383 (463)
+.++.++++++.+.+.+.... ...+ ...+.++.+....+.. .......|+..+.++++.|++.+|..+|......
T Consensus 348 fa~g~~~~g~~f~~l~~~~~~--~~~~--~~~s~~wl~~~~~~~t-~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~ 422 (493)
T PRK15462 348 FALGLGLMSAGFCILTLSARW--SAMY--GHSSLPLMVLGLAVMG-FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLS 422 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--cCCC--CCcCHHHHHHHHHHHH-HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 556667777776665443211 1111 1123334344444443 3455667899999999999999999999986643
Q ss_pred -HHHHHHHHhhhhhh
Q 012438 384 -FLFTFLTAQTFLPM 397 (463)
Q Consensus 384 -~~g~~~~~~~~~~~ 397 (463)
.++..++..+.+..
T Consensus 423 ~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 423 GAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHh
Confidence 57766666665544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=173.05 Aligned_cols=330 Identities=12% Similarity=0.056 Sum_probs=192.7
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhh----cchhhh-hHHHHHHHHHHHhh-h----hhh--hHHHHHH
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRAL----GRKVSI-LIGGVAFLAGSALG-G----SAF--NIYMLIF 89 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~~-~----~~~--~~~~l~~ 89 (463)
.++.+|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+..++. . .++ ..+..++
T Consensus 35 ~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (448)
T PRK09848 35 YTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYL 114 (448)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHH
Confidence 3455688999999999999999999999999999996 777644 55555444444332 1 111 2233445
Q ss_pred HHHHhhcccccccchhhHHhhhcCC-CCcccchhhhhhHH-----HHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHH
Q 012438 90 GRLLLGVGIGFGNQSVPLYLSEMAP-PKYRGTFNIGFQLC-----GAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPA 163 (463)
Q Consensus 90 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~ 163 (463)
.-++.+++.+...+...++..+..+ +++|.+..+.-..+ ..++..++|.++........ .+|.....+.++++
T Consensus 115 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~-~~~~~~~~~~~v~~ 193 (448)
T PRK09848 115 TYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMV-SVYHFWTIVLAIAG 193 (448)
T ss_pred HHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-hhHHHHHHHHHHHH
Confidence 5567788888888877788777765 46788776665543 33455566666543221100 12222222333333
Q ss_pred HHHHHHhh-cCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHH
Q 012438 164 SILTIGAI-FLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILI 242 (463)
Q Consensus 164 ~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (463)
++..+... ..||+++. +.+ +...+..++.+++++ .+....+
T Consensus 194 ~~~~~~~~~~~~e~~~~---~~~-------------------------------~~~~~~~~~~l~~n~----~f~~~~~ 235 (448)
T PRK09848 194 MVLYFICFKSTRENVVR---IVA-------------------------------QPSLKISLQTLKRNR----PLFMLCI 235 (448)
T ss_pred HHHHHHHHcCcEeccCC---Ccc-------------------------------CCCHHHHHHHHhCCc----hHHHHHH
Confidence 33333332 35554310 000 000011233333332 2333333
Q ss_pred HHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHH
Q 012438 243 PFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIM 322 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 322 (463)
..++..........+.|++.++....+....+.......++.+++.++.+++.||+|+|+.+.++..+..++.+.+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~- 314 (448)
T PRK09848 236 GALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV- 314 (448)
T ss_pred HHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-
Confidence 3333334444555566666665333333333233444456678889999999999999999998887777766555432
Q ss_pred HhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCc-------ccccchhHHHHHHHHHHHHHHHhhhh
Q 012438 323 AAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPL-------EIRSAGQSITVAVNFLFTFLTAQTFL 395 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~g~~~~~~~~~ 395 (463)
+....+.......+.+.+.+... +..+++.+|..|. +.+|...|+.++...+|..+++.+.+
T Consensus 315 ----------~~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 315 ----------SVWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333444444444333 4455555676654 34699999999999999999999998
Q ss_pred hhhhccc
Q 012438 396 PMLCHFK 402 (463)
Q Consensus 396 ~~~~~~~ 402 (463)
.+.+..|
T Consensus 384 ~~l~~~G 390 (448)
T PRK09848 384 FILGLSG 390 (448)
T ss_pred HHHHHcC
Confidence 8876654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=160.46 Aligned_cols=358 Identities=12% Similarity=0.096 Sum_probs=222.6
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hcchhhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHh
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRA-LGRKVSILIGGVAFLAGSALGG---SAFNIYMLIFGRLLL 94 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l~ 94 (463)
+.+.+.|.+++.++..++.+.|.....+.++++|++.|| +|-|..-++-.....+|.++.+ ..+.+|.+.++|++.
T Consensus 67 q~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~F 146 (459)
T KOG4686|consen 67 QIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLF 146 (459)
T ss_pred hhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheee
Confidence 334566778888999999999999999999999999997 7877665555555566766655 458999999999999
Q ss_pred hcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC----CcchhHH-----HH-HhhHHHHH
Q 012438 95 GVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK----GGWGWRI-----SL-AMAAAPAS 164 (463)
Q Consensus 95 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~gwr~-----~f-~~~~~~~~ 164 (463)
|+|.-....+...++.-|+..||.+.++|+.....-+|..+-..+..++.+.. ...|... .+ .......+
T Consensus 147 GIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~sl 226 (459)
T KOG4686|consen 147 GIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSL 226 (459)
T ss_pred ccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 99988888899999999999999999999999988888876554433332211 1011110 00 00001111
Q ss_pred HHHHHhhcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHH
Q 012438 165 ILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPF 244 (463)
Q Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (463)
+.+...-+. ++.++..+.+ ++....+...+.+. +...++ +|.+.+..
T Consensus 227 ical~lg~~-------------D~rAerilh~-----------------e~g~~Ge~pkLtdv--~~f~pp-fw~~~iic 273 (459)
T KOG4686|consen 227 ICALSLGLS-------------DDRAERILHL-----------------EEGFLGEEPKLTDV--NTFYPP-FWVLVIIC 273 (459)
T ss_pred HHHHHhhhh-------------hhHHHHHHhh-----------------hcCcccCCcccccc--cccCcc-HHHHHHHH
Confidence 111111011 1111111110 00000001111111 122233 34444444
Q ss_pred HHhhhhhhHHHhhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHH-HHHHHHHH
Q 012438 245 FQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVS-QVMIGSIM 322 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~-~~~~~~~~ 322 (463)
++.......+....|.+++ .+|.++..++ .+.+.......+.+.+.|.++||.|++...+.+..+..+. -..+.+..
T Consensus 274 v~yyva~fPFi~lg~~fF~~rfGlS~~~a~-~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~ 352 (459)
T KOG4686|consen 274 VLYYVAWFPFITLGPMFFQKRFGLSAVSAG-NILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF 352 (459)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhCCChhhcc-chhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh
Confidence 4444455566666676665 5788887777 6666667777888999999999999997776665554433 33333321
Q ss_pred HhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc
Q 012438 323 AAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK 402 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 402 (463)
.+++.. +++.+..+.+. ....|..++.+.|+++.|++.|.++...++|-.+.|.+.|.+.|+.+
T Consensus 353 ------------lsPy~~---m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 353 ------------LSPYTS---MTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred ------------ccHHHH---HHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 223333 33333333222 12234455677899999999999999999999999999999999877
Q ss_pred -c---hhHHHHHHHHHHHHHHHHHhcCC
Q 012438 403 -A---GIFFFFGGLVLIMTTFMHFFLPE 426 (463)
Q Consensus 403 -~---~~~~~~~~~~~~~~~~~~~~~~~ 426 (463)
+ ..+++..+...+..+.+.+++.+
T Consensus 417 ~y~~le~ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 417 SYDNLEAFFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhheec
Confidence 2 23444444444444444444433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=160.88 Aligned_cols=355 Identities=16% Similarity=0.117 Sum_probs=222.2
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHH--HHH-Hhhhhh----hhH-HHHHHHHHHhhcc
Q 012438 26 CKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFL--AGS-ALGGSA----FNI-YMLIFGRLLLGVG 97 (463)
Q Consensus 26 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~--i~~-~~~~~~----~~~-~~l~~~r~l~G~~ 97 (463)
-|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++....... .+. +...+. .|+ ...+++-+..|+.
T Consensus 38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~ 117 (412)
T PF01306_consen 38 AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLV 117 (412)
T ss_dssp H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999997776554433222 222 222232 232 2333444445555
Q ss_pred cccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcC-CCC
Q 012438 98 IGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFL-PET 176 (463)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~-~e~ 176 (463)
..+..|+.-+++.++. ++.+.=.|-.....++|.+++..+++.+... +-+..|++....+++..++.++. |+.
T Consensus 118 f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i----~p~~~fwi~s~~~~il~lll~~~~~~~ 191 (412)
T PF01306_consen 118 FNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI----NPNIIFWIASAAAIILLLLLLLLKPDV 191 (412)
T ss_dssp TTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHSS---S
T ss_pred HcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----CccHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 5566666666665554 3445567777888888888888888777653 35677887777666665555543 333
Q ss_pred hHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHh
Q 012438 177 PNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGL 256 (463)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
++.....+. ...++++.+.++..+..+.+ .+|.+.+......+.+..+..
T Consensus 192 ~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~l~k~~-~fw~~~l~v~g~~~~Y~vfdq 241 (412)
T PF01306_consen 192 PPQAEVADA-----------------------------LGAKKDKVSLKDVLSLFKMR-NFWFFVLFVIGVAAIYDVFDQ 241 (412)
T ss_dssp SSSS-SSTT-----------------------------SSS------HHHHHHHTTSH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhcc-----------------------------cccCCCCCcHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHH
Confidence 211111100 00111122344433332223 333344433333345566655
Q ss_pred hHHHHHHHcCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCc
Q 012438 257 YSPVLFRTLKLGE---STSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFS 333 (463)
Q Consensus 257 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (463)
..+.|...+..+. +...++..+...+..++...+.+++.+|+|.|+.++++..++.+-....++.
T Consensus 242 qf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~------------ 309 (412)
T PF01306_consen 242 QFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA------------ 309 (412)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh------------
Confidence 5666666544332 2344578888888999999999999999999999999999888887777664
Q ss_pred chhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHH-HHHHHHHHHHHHhhhhhhhhcccc-hhHHHHHH
Q 012438 334 EGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSIT-VAVNFLFTFLTAQTFLPMLCHFKA-GIFFFFGG 411 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~ 411 (463)
++.+.....-.+-+..+.....+. .-++++.+|++..++...+. +...+++..+.+.+.|.++|+.|. .++++.+.
T Consensus 310 -~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~ 387 (412)
T PF01306_consen 310 -TNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGL 387 (412)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHH
Confidence 445555555555555554443333 34557999999999999886 577889999999999999999995 56777777
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 012438 412 LVLIMTTFMHFFLPETKNV 430 (463)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~ 430 (463)
+.+...++..+.++++++.
T Consensus 388 iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 388 IVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHHHHS--SSST
T ss_pred HHHHHHHHheeeecCCCcc
Confidence 7777777777777765543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-19 Score=157.22 Aligned_cols=276 Identities=12% Similarity=0.054 Sum_probs=187.6
Q ss_pred hhhhhHHHHHHHHHHhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCC----------
Q 012438 79 GSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKG---------- 148 (463)
Q Consensus 79 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~---------- 148 (463)
+...+|+.++++-++.|.|.+...+..+.++++..+++++.+.+++.+..+++|..++|.++..+.....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 4567899999999999999999999999999999999999999999999999999999999886653210
Q ss_pred ---cchhHHHHHhhHHHHHHHHHHhhc--CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCc
Q 012438 149 ---GWGWRISLAMAAAPASILTIGAIF--LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHP 223 (463)
Q Consensus 149 ---~~gwr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (463)
..+||++|++.+...++..+.+.+ +||.++. + .++. .+++ ...
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~-----~-~~~~-------------------------~~~~-~~~ 132 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEA-----D-VARV-------------------------SSGD-TTQ 132 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcc-----c-cccc-------------------------cccc-ccc
Confidence 147999999776665555555444 4553210 0 0000 0000 000
Q ss_pred hhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHH---cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 012438 224 FKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRT---LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR 300 (463)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 300 (463)
.++. .+++.++...+..++..........|.+.|+++ .+.++.... ........+.++++++.+++.||+++
T Consensus 133 ~~~~----~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~-~~~s~~~~~~~iGr~~~~~l~~r~g~ 207 (310)
T TIGR01272 133 KTSA----FQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAA-HFTAYTWGGAMVGRFIGSAVMPMISQ 207 (310)
T ss_pred hhhH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 0111 122334445555666655677888899999975 367776666 77888999999999999999999999
Q ss_pred chhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHH
Q 012438 301 KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITV 380 (463)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 380 (463)
|+.+.++..+..+..++.... +.. .......+.+.+.+..+ |.......+..|+ ..+++.++.
T Consensus 208 ~~~l~~~~~l~~~~~~l~~~~-------------~~~-~~~~~~~l~g~~~s~i~-P~~~s~a~~~~~~-~~~~asai~- 270 (310)
T TIGR01272 208 GRYLAFNAFLAVLLSIGAALT-------------HGY-VAMWFVLALGLFNSIMF-PTIFSLALNALGR-HTSQGSGIL- 270 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-------------CCH-HHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh-hhhhhHHHH-
Confidence 998877766666554333221 111 11223334444444443 4444555566664 456666764
Q ss_pred HHHHHHHHHHHhhhhhhhhcccchhHHH
Q 012438 381 AVNFLFTFLTAQTFLPMLCHFKAGIFFF 408 (463)
Q Consensus 381 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 408 (463)
..+.+|+.+.|.+.|.+.|..+....+.
T Consensus 271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 6788999999999999999887544443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-17 Score=146.41 Aligned_cols=354 Identities=14% Similarity=0.081 Sum_probs=235.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhh-hHHHHHHHHHHHhhhhhhh---HHHHHHHHHHhhcccccccch
Q 012438 29 DSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSI-LIGGVAFLAGSALGGSAFN---IYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 29 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~ 104 (463)
+.+..+...++..+..++.+|+.|.++|+.|+||.. -....+..++.++..+.++ ++..++.-.+..++.......
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 456788899999999999999999999999976554 4555555566666666644 455556678888888999999
Q ss_pred hhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhccc---------------CCcchhHHHHHhhHHHHHHHHHH
Q 012438 105 VPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKI---------------KGGWGWRISLAMAAAPASILTIG 169 (463)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~---------------~~~~gwr~~f~~~~~~~~~~~~~ 169 (463)
..+++.+..++++-++..++-.....+|..+.-+........ .+...=|..+.+.++..++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999999888887777766667666655443111111 12245788888888877665554
Q ss_pred hh-cCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhh
Q 012438 170 AI-FLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQV 248 (463)
Q Consensus 170 ~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (463)
.+ ..++.++-. .+.....++..+ +.+++++++++++ .+..+++..+...
T Consensus 216 m~~~v~~~~~~~---~~~~~~l~~g~k-----------------------~L~~t~k~i~~~~----~i~~FLiA~~~~~ 265 (438)
T COG2270 216 MILNVHDAEKIS---SPPPTALRNGFK-----------------------ELKSTFKEIRGRK----NLVLFLIARFFYI 265 (438)
T ss_pred HHhccccccccc---ccchHHHHHHHH-----------------------HHHHHHHHHhccc----chHHHHHHHHHHH
Confidence 44 466554210 010011111111 1122344443333 2333444444444
Q ss_pred hhhhHHHhhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhC
Q 012438 249 TGINIVGLYSPVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLG 327 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (463)
-+.++.......+-. ++|++..+.. .+.....+.+++++++.|++.||+|.|+++..+.++..+..+...+.-
T Consensus 266 DGv~til~~~~~fg~~~~gls~~~ll-l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~----- 339 (438)
T COG2270 266 DGVNTILAMGGVFGAADLGLSSTELL-LIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE----- 339 (438)
T ss_pred hhHHHHHHHHHHHHHHHcCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-----
Confidence 567777777777776 7888888877 888888999999999999999999999998888877776665554431
Q ss_pred CCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchh-H
Q 012438 328 DHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGI-F 406 (463)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~ 406 (463)
.+...| +...+.+...+ .....+-.+..+++|+++.+..+|+++..++..++++|...+.+.+.++... -
T Consensus 340 -----~~~~f~---i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g 410 (438)
T COG2270 340 -----GELDFW---ILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG 410 (438)
T ss_pred -----ccHHHH---HHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence 111122 22222222222 2245667777899999999999999999999999999999999998887433 3
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 012438 407 FFFGGLVLIMTTFMHFFLPET 427 (463)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~ 427 (463)
+....+....+++.+..+|+.
T Consensus 411 ~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 411 VLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhhHhhEEeecCC
Confidence 333344444555555555554
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-18 Score=151.32 Aligned_cols=361 Identities=13% Similarity=0.053 Sum_probs=235.5
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh------hhHH--HHHHHHHHhh
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA------FNIY--MLIFGRLLLG 95 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------~~~~--~l~~~r~l~G 95 (463)
+.++ +....-|+.-+|.+.+....+++-|+.|++|-|...+++..+..+|..+-..+ +.++ ....+..+.+
T Consensus 73 ~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa 151 (480)
T KOG2563|consen 73 SFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAA 151 (480)
T ss_pred HHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHH
Confidence 3345 66677899999999999999999999999999999999999999999987766 3455 7778999999
Q ss_pred cccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC---CcchhHH--HHHhhHHHHHHHHHHh
Q 012438 96 VGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK---GGWGWRI--SLAMAAAPASILTIGA 170 (463)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~gwr~--~f~~~~~~~~~~~~~~ 170 (463)
.++-........+..-|++++||..+..+-..+..+|.+++.++...+-... ++..|-. .|+..+.++.+.+++.
T Consensus 152 ~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~ 231 (480)
T KOG2563|consen 152 AAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALV 231 (480)
T ss_pred HhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888777888899999999999999999999999999888876664433 2356765 3554444444444433
Q ss_pred hc-CCC---ChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHH
Q 012438 171 IF-LPE---TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQ 246 (463)
Q Consensus 171 ~~-~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (463)
.+ .+| +|+...+.+. .+.+...+.++.++ ++.+....+.+..
T Consensus 232 ~~~~~~~P~tPps~s~~~~------------------------------~~~~f~~si~~~~~----n~~F~il~~~ygi 277 (480)
T KOG2563|consen 232 LFVFTKKPPTPPSASQAAL------------------------------QDASFPKSIKSCFK----NRQFIILAICYGI 277 (480)
T ss_pred HHhcCCCCCCCCchhHhhh------------------------------hcCcHHHHHHHHHc----CccHHHHHHHHhh
Confidence 33 333 3321111100 00011222333333 3334555555555
Q ss_pred hhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCch-hhhHhhHHHHHHHHHHHHHHHhh
Q 012438 247 QVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKV-LFLVGGIQMLVSQVMIGSIMAAQ 325 (463)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 325 (463)
....++.....+..-+...+++...++ +......+++++++.+.|.+.||.++-+ .+.+......++...+....
T Consensus 278 ~~g~F~~l~~~l~~~l~~sgY~~~~aG-~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t--- 353 (480)
T KOG2563|consen 278 GLGLFNSLSTLLNLALCPSGYEGVFAG-YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT--- 353 (480)
T ss_pred hHHHHHHHHHHhhhccccccCCccccc-hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 555555555555544445566654444 8888899999999999999999987644 34444444333321111110
Q ss_pred hCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc---
Q 012438 326 LGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK--- 402 (463)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~--- 402 (463)
. .....+..... +.....+..+..|+...+..|..=|..-++..|+.+..+++.+++-..+.+...+..+
T Consensus 354 --~----~~~~~viv~~t-~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~ 426 (480)
T KOG2563|consen 354 --L----FLGDSVIVFTT-CGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPG 426 (480)
T ss_pred --c----cCCceEehhhh-HHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCC
Confidence 0 01112222222 2223334445567888888887666788889999999999999999999888887766
Q ss_pred -chhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012438 403 -AGIFFFFGGLVLIMTTFMHFFLPETKNV 430 (463)
Q Consensus 403 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (463)
+....+......+....+..+.++..+|
T Consensus 427 ~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 427 NTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred CCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 4444444444444444444445544433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=143.42 Aligned_cols=392 Identities=15% Similarity=0.080 Sum_probs=227.0
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hcchhhhhHHHHHHHHHHHhhhhhh--hHHHHHHHHHHhhccccccc
Q 012438 26 CKFDSQLLTTFTSSLYITGILGSLIASSVTRA-LGRKVSILIGGVAFLAGSALGGSAF--NIYMLIFGRLLLGVGIGFGN 102 (463)
Q Consensus 26 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 102 (463)
+|+++++..-+.+.|.--.-+..+++|+++|| .|+|+.+..+.++..+|.++.+.+. +...+.++-.+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 57899999999999888888899999999999 7999999999999999999999984 78899999999999999999
Q ss_pred chhhHHhhhcCCCCc--ccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCC----C
Q 012438 103 QSVPLYLSEMAPPKY--RGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPE----T 176 (463)
Q Consensus 103 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e----~ 176 (463)
+....+++|.+|+++ |...++++..+.++|.+++|++...+... .||...|-+.++-..+.++..+..+. +
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~---~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN---YGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence 999999999998643 66789999999999999999997766654 57999999888877666655544331 1
Q ss_pred hHHHHhhCCcHHHHHHHHHHH------------hCchhHHHHHH------HHHHHhhcccccCCchhhhhcccchhhHHH
Q 012438 177 PNSIIQRSNDHQKAQKMLQRV------------RGIADVEAELN------DLIRASSISKSITHPFKNIAQRKYRPQLVM 238 (463)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (463)
+.....+..+..+........ ...+....... ...-..+..+..+.. .+..|....-+.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl 291 (498)
T COG3104 213 GGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFL 291 (498)
T ss_pred CCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHH
Confidence 100000000011111110000 00000000000 000000000000000 11000000011111
Q ss_pred HHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--h-----hhhHhhHHH
Q 012438 239 AILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRK--V-----LFLVGGIQM 311 (463)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~-----~~~~~~~~~ 311 (463)
...+.+.+.......+..|.....++..++-+....+.-++..+.-++.+++..++..|.+++ . -+.++..++
T Consensus 292 ~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~ 371 (498)
T COG3104 292 FAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHH
Confidence 112222222222333334443333322111111222566777777788888888887774433 1 133444444
Q ss_pred HHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHH
Q 012438 312 LVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTA 391 (463)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 391 (463)
+.+.+++..... ...+ +....+.++.+ ...+.........+|+...++..+.|+...+..++........+..++.
T Consensus 372 g~~fl~l~~~~~-~~~~--~~~~~s~~~li-l~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g 447 (498)
T COG3104 372 GLGFLILLLAGI-WFGG--PSGLVSVWWLV-LSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGG 447 (498)
T ss_pred HHHHHHHHHHHH-hhcC--CCCCcCHHHHH-HHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444433311 1111 01112233333 3333334445566788888889999999999999998888888888887
Q ss_pred hhhhh------hhhccc-chhHHHHHHHHHHHHHHHHHhcC
Q 012438 392 QTFLP------MLCHFK-AGIFFFFGGLVLIMTTFMHFFLP 425 (463)
Q Consensus 392 ~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 425 (463)
.+.+. ..+... ...+..++.+..+.+.......|
T Consensus 448 ~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 448 QVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred eecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 77663 112222 33444444444555554444333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-17 Score=153.58 Aligned_cols=364 Identities=15% Similarity=0.087 Sum_probs=254.0
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh-------------------
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA------------------- 81 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------------------- 81 (463)
.+++.|+++.++.|++.+.+-++..+...+..+.+-|.-|-+.+-+|.++++++++++++-
T Consensus 122 tiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~ 201 (735)
T KOG3626|consen 122 TIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVE 201 (735)
T ss_pred hhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcccc
Confidence 4678889999999999999999999999999999999999999999999999999998762
Q ss_pred -h---------------------------h----HH-HHHHHHHHhhcccccccchhhHHhhhcCCCCcccchhhhhhHH
Q 012438 82 -F---------------------------N----IY-MLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLC 128 (463)
Q Consensus 82 -~---------------------------~----~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 128 (463)
+ . ++ .++++.++.|+|....++...+|+-|...+++-+.++++....
T Consensus 202 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~ 281 (735)
T KOG3626|consen 202 NPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM 281 (735)
T ss_pred CCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH
Confidence 0 0 22 6777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccCCcc----------------hhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhhCCcHHHHHH
Q 012438 129 GAIGVLSANLLNYGTQKIKGGW----------------GWRISLAMAAAPASILTIGAIFLPETPNSIIQRSNDHQKAQK 192 (463)
Q Consensus 129 ~~~G~~~~~~~~~~~~~~~~~~----------------gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 192 (463)
..+|.++|.++|.++..+..+. .|..-|++.+.+.++..+..+++|.+.+...++.+ +
T Consensus 282 ~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~----~-- 355 (735)
T KOG3626|consen 282 AILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKR----A-- 355 (735)
T ss_pred HHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccch----h--
Confidence 9999999999998875433211 48888899999888888888888766432111100 0
Q ss_pred HHHHHhCchhHHHHHHHHHHHhhcccccCCchhh---hhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHH-HcCCC
Q 012438 193 MLQRVRGIADVEAELNDLIRASSISKSITHPFKN---IAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLG 268 (463)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 268 (463)
++.+...+ .....+..+.....+++ ..++...++++....+...+....+..+.+|+|.|++ +++.+
T Consensus 356 --~~~~~~k~-------~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~s 426 (735)
T KOG3626|consen 356 --RDLHVLKT-------ESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGIS 426 (735)
T ss_pred --hhhccccc-------ccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCC
Confidence 00000000 00000011111122233 3345566777888888888888889999999999997 57888
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhcC--CchhhhHhhHHHHHHHHHHHHHHHhh---------------------
Q 012438 269 ESTSLLLSALVAGGMGTVFAIVSMILADKFG--RKVLFLVGGIQMLVSQVMIGSIMAAQ--------------------- 325 (463)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 325 (463)
...+..+...+...+..+|.+++|++..|+. .|....+..+...++++.........
T Consensus 427 as~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~ 506 (735)
T KOG3626|consen 427 ASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTS 506 (735)
T ss_pred HHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCcccc
Confidence 8888745556666677889999999999874 45555555555555444422221111
Q ss_pred -------------------------------------------hC-----------C-----CC--------CCc-chhH
Q 012438 326 -------------------------------------------LG-----------D-----HG--------GFS-EGYA 337 (463)
Q Consensus 326 -------------------------------------------~~-----------~-----~~--------~~~-~~~~ 337 (463)
.+ . .+ +.+ ....
T Consensus 507 ~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~ 586 (735)
T KOG3626|consen 507 HENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQF 586 (735)
T ss_pred CCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhh
Confidence 00 0 00 000 1122
Q ss_pred HHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHH-HHHHHHHhhhhhhhhc
Q 012438 338 YLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF-LFTFLTAQTFLPMLCH 400 (463)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~ 400 (463)
..+++.+++..+..+.+..|..... -..+|++.|..++|+..++.+ +|.+-+|.++|+++|.
T Consensus 587 ~~Fl~~~~~~sf~~~~~~~p~~~i~-LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 587 LIFLALFAIGSFIGALGAVPGMLIV-LRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred HHHHHHHHHHHHHHHhccCcceEEE-EEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 2333333433444444444544444 588999999999999988765 7788899999999986
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-19 Score=169.52 Aligned_cols=372 Identities=16% Similarity=0.133 Sum_probs=3.0
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh-----------------
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF----------------- 82 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----------------- 82 (463)
..+++.|++++++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++.++|++++++-+
T Consensus 27 ttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~ 106 (539)
T PF03137_consen 27 TTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGN 106 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccc
Confidence 357899999999999999999999999999999999998777899999999999999876420
Q ss_pred ---------------------------------hHHHHHHHHHHhhcccccccchhhHHhhhcCCCCcccchhhhhhHHH
Q 012438 83 ---------------------------------NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCG 129 (463)
Q Consensus 83 ---------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 129 (463)
-++.++++.++.|+|....++...+|+-|..++++-+.++|+..+..
T Consensus 107 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~ 186 (539)
T PF03137_consen 107 SSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMS 186 (539)
T ss_dssp ---------------------------------------------SSS--------------------------------
T ss_pred cccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHh
Confidence 13568889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccCCc-------------------chhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhhCCcHHHH
Q 012438 130 AIGVLSANLLNYGTQKIKGG-------------------WGWRISLAMAAAPASILTIGAIFLPETPNSIIQRSNDHQKA 190 (463)
Q Consensus 130 ~~G~~~~~~~~~~~~~~~~~-------------------~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 190 (463)
.+|.++|.++++.+..+..+ ..|..-|++.+...++..+..+++|+.-+...+..+ +.
T Consensus 187 ~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~---~~ 263 (539)
T PF03137_consen 187 ILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQE---EK 263 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccc---hh
Confidence 99999999998876543110 137777777777777777777667655322210000 00
Q ss_pred HHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhh---hhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHH-HcC
Q 012438 191 QKMLQRVRGIADVEAELNDLIRASSISKSITHPFKN---IAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFR-TLK 266 (463)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 266 (463)
+...++. .+ ...++ ..+.+..+......++ ..++..+++.+....+...........+..+.|.|++ +++
T Consensus 264 ~~~~~~~--~~---~~~~~-~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~ 337 (539)
T PF03137_consen 264 ESSERKE--ED---SDKDS-FKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFG 337 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcch--hh---hhhhc-ccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0000000 00 00000 0000000001122222 3345566777887888888877888899999999997 467
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC--CchhhhHhhHHHHHHHHHHHHHH--HhhhCC-------C------
Q 012438 267 LGESTSLLLSALVAGGMGTVFAIVSMILADKFG--RKVLFLVGGIQMLVSQVMIGSIM--AAQLGD-------H------ 329 (463)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~------ 329 (463)
.++..+..+...+...+..+|.+++|++.+|++ .|+.+.+..+...++.+...... ...... +
T Consensus 338 ~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~ 417 (539)
T PF03137_consen 338 LSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSS 417 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCC
Confidence 777777744444455577899999999999874 45565555555555444422111 111000 0
Q ss_pred -----------------------CC-Ccc--hhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHH
Q 012438 330 -----------------------GG-FSE--GYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVN 383 (463)
Q Consensus 330 -----------------------~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 383 (463)
+. ..+ ......++..++..+..+....|..... -..+|+++|+.+.|+...+.
T Consensus 418 ~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~-LR~V~~~~rs~AlGv~~~~~ 496 (539)
T PF03137_consen 418 SPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLIT-LRCVPPEQRSFALGVQWLII 496 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheee-eccCChhhcchhhhHHHHHH
Confidence 00 000 1122223333333333344445555444 48899999999999998875
Q ss_pred H-HHHHHHHhhhhhhhhcc
Q 012438 384 F-LFTFLTAQTFLPMLCHF 401 (463)
Q Consensus 384 ~-~g~~~~~~~~~~~~~~~ 401 (463)
+ +|.+-+|.++|.+.|..
T Consensus 497 rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 497 RLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -------------------
T ss_pred HhhcCcchHHHHhHHHhhh
Confidence 5 67788999999999875
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-14 Score=126.87 Aligned_cols=332 Identities=12% Similarity=0.019 Sum_probs=212.9
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhc-----chhh-hhHHHHHHHHHHHhhhhh-----h-------hH-
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALG-----RKVS-ILIGGVAFLAGSALGGSA-----F-------NI- 84 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~-~~~~~~~~~i~~~~~~~~-----~-------~~- 84 (463)
.|+++.....+.+.+..++... ..+.+|+.+|+.+ ||.. +..|.++...+..+.+++ . +.
T Consensus 8 vEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 4568888888988888877665 5889999999999 7754 455666666665555443 2 12
Q ss_pred -H--HHHHHHHHhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHH
Q 012438 85 -Y--MLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAA 161 (463)
Q Consensus 85 -~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~ 161 (463)
+ ...+.-.+.|+|.+.......++++|..|+++|+++.++.....-+|.+++..+.+.+.+-.+...-...+...++
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~ 166 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVAL 166 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHH
Confidence 2 3445667889999999999999999999999999999999999999999999886655433221112222333333
Q ss_pred HHHHHHHHhhcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHH
Q 012438 162 PASILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAIL 241 (463)
Q Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (463)
..+...++..+-.|.+.....+.+ ++++....+.+++++.++..++++..+.
T Consensus 167 i~~~l~~ia~wg~E~r~~~~~~~~----------------------------~~~~~~f~~a~~~~~~~~~a~~f~~fl~ 218 (403)
T PF03209_consen 167 IALLLNLIALWGQEPRRSRRAAAA----------------------------ERPRPPFREAWRQVWASPQARRFFVFLF 218 (403)
T ss_pred HHHHHHHHHHHhcccCCcccccCC----------------------------CCCCccHHHHHHHHHhCCChhHHHHHHH
Confidence 333333334443333211111000 0001111223444444454454444443
Q ss_pred HHHHHhhhhhhHHHhhH-HHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-hcCCchhhhHhhHHHHHHHHHHH
Q 012438 242 IPFFQQVTGINIVGLYS-PVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILAD-KFGRKVLFLVGGIQMLVSQVMIG 319 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~ 319 (463)
+..+ .+......+ |+=-+-++.+..++. -++.....+.+++....+++.. |.++++...+++....++..++.
T Consensus 219 l~t~----a~~~QD~iLEPygg~Vfgmsv~eTT-~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii 293 (403)
T PF03209_consen 219 LGTL----AFFMQDVILEPYGGEVFGMSVGETT-RLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII 293 (403)
T ss_pred HHHH----HHHhhHHHcCCchhHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3332 222222222 222244678888877 7888888999999999898776 57777877788877777776655
Q ss_pred HHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhh
Q 012438 320 SIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLC 399 (463)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 399 (463)
..- ...+.+.......+++.+.+.......... .++.+++..|+.+|.....+.+...++..+.|.+.|
T Consensus 294 ~a~----------~~~~~~~~~~~~~l~G~g~G~f~vgals~m-M~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 294 LAG----------PLGSPWLFRPGVFLLGLGNGLFTVGALSLM-MDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HHH----------hcccchHHHHHHHHHHHhhhHHHHHHHHHH-HhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 542 113355555566666665554433333333 588888999999999999999999999999888877
Q ss_pred c
Q 012438 400 H 400 (463)
Q Consensus 400 ~ 400 (463)
.
T Consensus 363 ~ 363 (403)
T PF03209_consen 363 L 363 (403)
T ss_pred H
Confidence 5
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=138.52 Aligned_cols=366 Identities=13% Similarity=0.114 Sum_probs=222.1
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcc-hhhhhHHHHHHHHHHHhh-hhh---h-hHHHHHHHHHHhhccc
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGR-KVSILIGGVAFLAGSALG-GSA---F-NIYMLIFGRLLLGVGI 98 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~-~~~---~-~~~~l~~~r~l~G~~~ 98 (463)
|.+.+.+..|++.++..++.+++++..|++..|.+. |+.++.+.++..+|+++. +.. + ..+.++++|++.|+|.
T Consensus 65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~ 144 (488)
T KOG2325|consen 65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV 144 (488)
T ss_pred CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence 346788899999999999999999999999999987 888899999999999988 333 3 6789999999999987
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCc----------chhHHHHHhhHHHHHHHHH
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGG----------WGWRISLAMAAAPASILTI 168 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~----------~gwr~~f~~~~~~~~~~~~ 168 (463)
|.. ....+|+++....++|.++++....+..+|.++||.++.++..+... +-+..+-|+.++..++..+
T Consensus 145 ~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v 223 (488)
T KOG2325|consen 145 GNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIV 223 (488)
T ss_pred ccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHH
Confidence 754 68889999999999999999999999999999999998888765531 1133466777777777666
Q ss_pred Hhhc-CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHh
Q 012438 169 GAIF-LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQ 247 (463)
Q Consensus 169 ~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (463)
...+ ++|.++...+++.+.++ +++.+ ..+..+.+..+...+.+.+..+..
T Consensus 224 ~i~~~f~E~~~~~~~~~~~~~~----------------------~~~~~-------~~~~~~~~~d~~~~~vc~~~~~~~ 274 (488)
T KOG2325|consen 224 IILFFFKEVYRGIIDKKKRSVE----------------------EEKSD-------IEKVKKPKLDWVAVLVCIFLRFVV 274 (488)
T ss_pred HHHhheeecccCccccccccch----------------------hhccc-------hhhhccCChhHHHHHHHHHHHHHH
Confidence 6544 77765432222110000 00000 000000111122222333333333
Q ss_pred hhhhhH-HHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHH-HHHhh---cCCchhhhHhhHHHHHHHHHHHHHH
Q 012438 248 VTGINI-VGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSM-ILADK---FGRKVLFLVGGIQMLVSQVMIGSIM 322 (463)
Q Consensus 248 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~~ 322 (463)
...+.. -..+.+.....+++..+++.........+.+++...+.. +..-| +.+|..+..+.+....+..+.....
T Consensus 275 ~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~ 354 (488)
T KOG2325|consen 275 NFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPW 354 (488)
T ss_pred HHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeec
Confidence 333333 334445555667777766664444444444444443332 22222 3445555555444433333332221
Q ss_pred HhhhCC--------CCCCcchh----------HHHHHH-HHHHHhhhhhccccceecccccccCCcccccchhHHHHHHH
Q 012438 323 AAQLGD--------HGGFSEGY----------AYLILV-MVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVN 383 (463)
Q Consensus 323 ~~~~~~--------~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 383 (463)
...... .+...... .+..+. ...+++.++-....+. .++.+|...++.+++..++.....
T Consensus 355 ~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~-~tlySkiLgp~~q~~~qg~~~~~~ 433 (488)
T KOG2325|consen 355 GFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTAL-DTLYSKILGPRDQGTMQGVFSISG 433 (488)
T ss_pred cccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchH-HHHHHHHhCCccccceeEEEEecc
Confidence 111100 00000111 111111 1122222222111223 344489999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q 012438 384 FLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMH 421 (463)
Q Consensus 384 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (463)
..+..++|.+........|....+....+..++....+
T Consensus 434 s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 434 SIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW 471 (488)
T ss_pred chhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 99999999999888888887776666555554444433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-16 Score=150.10 Aligned_cols=175 Identities=15% Similarity=0.087 Sum_probs=130.1
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHh---hhhhhhHHHHHHHHHHhhcccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSAL---GGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
++++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+. ...+++...++++|++.|++.+
T Consensus 278 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 357 (490)
T PRK10642 278 SHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILN 357 (490)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3445778778888888889999999999999999999999988877654433332 2234567778889999998877
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNS 179 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~ 179 (463)
........++.|.+|++.|++.++.......++..++|.+.+.+.+.. .+|+.++++..+++++..+..+++||+|++
T Consensus 358 ~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~~~~~~~~pes~~~ 435 (490)
T PRK10642 358 CFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIGLITGVTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 777778888999999999999998744334444566666655544322 257877777777777777777778999998
Q ss_pred HHhh----CCcHHHHHHHHHHHhC
Q 012438 180 IIQR----SNDHQKAQKMLQRVRG 199 (463)
Q Consensus 180 ~~~~----~~~~~~~~~~~~~~~~ 199 (463)
+.++ +++.||+++.++++++
T Consensus 436 ~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 436 PLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred CCCCccccccchhhHHHHhhcccc
Confidence 7654 3447888888888863
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-15 Score=118.66 Aligned_cols=136 Identities=26% Similarity=0.335 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHHhhhcCCCC
Q 012438 37 TSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPK 116 (463)
Q Consensus 37 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 116 (463)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCC
Q 012438 117 YRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPE 175 (463)
Q Consensus 117 ~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e 175 (463)
+|++..++.+....+|..+++.+++.+.+. .+|++.+++.++..++..+..++ .||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQF---LGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcc---cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999998776543 47999999888877776666554 454
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-13 Score=126.94 Aligned_cols=319 Identities=12% Similarity=0.109 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcc--cccccchhhHHhhhcCCCC
Q 012438 39 SLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG--IGFGNQSVPLYLSEMAPPK 116 (463)
Q Consensus 39 ~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~ 116 (463)
...+...+.++..|.++||+|||..+.+......+..+...+.. +|.+ + +.|+. .+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFF-L---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHh-h---hcccccchhhhhhhhhhheeeccchh
Confidence 34677788999999999999999999999999888888777776 4433 3 44433 3456678888999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCChHHHHhhCCcHHHHHHHHH
Q 012438 117 YRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETPNSIIQRSNDHQKAQKMLQ 195 (463)
Q Consensus 117 ~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~ 195 (463)
+|....++.......+..++|.++...... .|.-.+|.+..+..++..+..++ +||+-...... + ...+
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~---~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~----~---~~~~ 214 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKF---LGIALVFLIAAASGILSLLYMLLFLPESLQEKERS----D---ATLR 214 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHhhccccccCccccc----c---cccc
Confidence 999999999999999999999998777655 35677888888887777766654 88874211110 0 0000
Q ss_pred HHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHH-HHcCCCCchhHH
Q 012438 196 RVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLL 274 (463)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 274 (463)
..... ........+.++...+....+..+..+....+..........-..+.++ ..++++..+..
T Consensus 215 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s- 280 (463)
T KOG2816|consen 215 ELTPG-------------SLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFS- 280 (463)
T ss_pred ccCCC-------------cccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHH-
Confidence 00000 0000000111222222111122222222222211111110110112223 24677777777
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhc
Q 012438 275 LSALVAGGMGTVFAIVSM-ILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCY 353 (463)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (463)
.+....+....++.++.. .+...++.|+....+.....+......+. ...|.......+... ..
T Consensus 281 ~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------------~~~w~~~~~~v~~~~--~~ 345 (463)
T KOG2816|consen 281 DLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------------TETWMMFAAGVVVAL--AG 345 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-------------ccchhhhHHHHHHHh--hc
Confidence 666666677777777666 77888898988888888887777777775 223332222222222 22
Q ss_pred cccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 012438 354 SWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF 401 (463)
Q Consensus 354 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 401 (463)
...|...+..+...+++.+|+++++...+..+.+.++|.+.+.+...+
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 234566666678889999999999999999999999999999886543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=120.44 Aligned_cols=182 Identities=18% Similarity=0.163 Sum_probs=147.1
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHH
Q 012438 233 RPQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQML 312 (463)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 312 (463)
+.+.++...+.+......-..+..-.|.+.++.+++..+.+ .+.+...+..-++.++.|.++||.+.|..+..+.++++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG-~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa 105 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLG-ILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence 34455555555555555555667777889999998888888 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHh
Q 012438 313 VSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQ 392 (463)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 392 (463)
+..+++++. ++.+...++..+-+.+.+.+++|....+ ..-+|++.||+..++.|+..++|+.+.|.
T Consensus 106 i~nil~Gfs-------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i-~~Wfsr~eRG~~~siWn~shNiGGal~~~ 171 (448)
T COG2271 106 IVNILFGFS-------------PSLFLFAVLWVLNGWFQGMGWPPCARTI-THWFSRKERGTWWSIWNTSHNIGGALAPL 171 (448)
T ss_pred HHHHHHhhh-------------hHHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHcCccccCceEEEehhhhhcccchHHH
Confidence 999999886 4566677777777888888887777666 69999999999999999999999999999
Q ss_pred hh--hhhhhcccchh-HHHHHHHHHHHHHHHHHhcCCCCC
Q 012438 393 TF--LPMLCHFKAGI-FFFFGGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 393 ~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 429 (463)
+. +.+.++.++.. +++-+++.++++++.++..+++.+
T Consensus 172 ~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 172 VALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99 88888877655 445555666677777777776544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.2e-14 Score=137.14 Aligned_cols=141 Identities=13% Similarity=-0.018 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHHhhhc
Q 012438 33 LTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEM 112 (463)
Q Consensus 33 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 112 (463)
..+...+..++..++.++.|+++||+|||++++.+.++.+++.++.++.++...+++.+++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677799999999999999999999999999999999999999998888888999999998888999999999999
Q ss_pred CCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCCh
Q 012438 113 APPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETP 177 (463)
Q Consensus 113 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~ 177 (463)
+|.++|++++++......+|.+++|.+++.+... +...+|++.++..++..++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999998766542 356788888888777777777789875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=130.57 Aligned_cols=149 Identities=16% Similarity=0.176 Sum_probs=126.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh----hHHHHHHHHHHhhcccccccch
Q 012438 29 DSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF----NIYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 29 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~ 104 (463)
+..+.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999988876666532 3466778899999999988889
Q ss_pred hhHHhhhcCCCCcccchhhhhh-HHHHHHHHHHHHhhhhhcccCCc---chhHHHHHhhHHHHHHHHHHhhc-CCCCh
Q 012438 105 VPLYLSEMAPPKYRGTFNIGFQ-LCGAIGVLSANLLNYGTQKIKGG---WGWRISLAMAAAPASILTIGAIF-LPETP 177 (463)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~---~gwr~~f~~~~~~~~~~~~~~~~-~~e~~ 177 (463)
...++.|++|+++|+++.++.+ ...++|.++||.+++.+.+..+. +||+..|++.++..++..++.++ ++|+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8999999999999999999997 67889999999999888766443 57999999988887777666654 77663
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-12 Score=111.83 Aligned_cols=235 Identities=14% Similarity=0.113 Sum_probs=150.6
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccch
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 104 (463)
++|++..|++.+....+...++..++.|.++||+|||+.-+...++++++++ +-..++++.++++|++.|++....+.+
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~ 141 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSA 141 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999886 456689999999999999999999888
Q ss_pred hhHHh-hhcC----CCCcccchhhhhh-HHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCCh
Q 012438 105 VPLYL-SEMA----PPKYRGTFNIGFQ-LCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETP 177 (463)
Q Consensus 105 ~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~ 177 (463)
-.++. .|.- |++..+...+... ..+++-.+.+++++-.+.+..+ .|-..+|....+..++..++... .+|++
T Consensus 142 FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 142 FESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence 88875 4442 2222222222222 2233333444444433333222 23477888877777776666544 56653
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
....++.+ ..+. .++.++.+. ..++.+....+..+.....+..+..|
T Consensus 221 g~~~~~~~----~~~~--------------------------~~~a~~~i~---~d~ril~LG~~qslFE~smy~FVflW 267 (354)
T PF05631_consen 221 GDTSSSSS----LSGS--------------------------FREAWRAIL---SDPRILLLGLIQSLFEGSMYLFVFLW 267 (354)
T ss_pred CCcccccc----hHHH--------------------------HHHHHHHHH---cCchhHHHHHHHHHHHHHHHHheeee
Confidence 21000000 0000 001112222 12445566666777777777777788
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012438 258 SPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADK 297 (463)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 297 (463)
.|.+- ..+...-.|.+.....++.++|+.+..++..+
T Consensus 268 tPaL~---~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 268 TPALD---PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred eceec---CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88876 22222223377777888888998888765554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=123.36 Aligned_cols=177 Identities=16% Similarity=0.094 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHH
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQV 316 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 316 (463)
+.......+...........+.|.+.++.+.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 97 (398)
T TIGR00895 19 IILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLG-FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTL 97 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHH-HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3333334444444455566778888888888877776 777888889999999999999999999999988877777666
Q ss_pred HHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhh
Q 012438 317 MIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLP 396 (463)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 396 (463)
..... ++.+..++...+.+.+.+.. .+....+..|.+|++.|+++.++.+....+|..+++.+.+.
T Consensus 98 ~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 163 (398)
T TIGR00895 98 LCALA-------------TNVTQLLILRFLAGLGLGGL-MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW 163 (398)
T ss_pred HHHHc-------------cchHHHHHHHHHHhcccccc-hhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHH
Confidence 55442 22334444444444444433 45566777899999999999999999999999999999999
Q ss_pred hhhcccchhHHHHH-HHHHHHHHHHHHhcCCCC
Q 012438 397 MLCHFKAGIFFFFG-GLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 397 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 428 (463)
+.+..++...+... .+..+...+.....|++.
T Consensus 164 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 164 LIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred HhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 98888765544444 444555555556666653
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=115.93 Aligned_cols=353 Identities=12% Similarity=0.076 Sum_probs=221.3
Q ss_pred ccccCchhHH-HHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccc
Q 012438 25 YCKFDSQLLT-TFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQ 103 (463)
Q Consensus 25 ~~~~s~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 103 (463)
+-|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++.+.+-+..++-|++.+. ..
T Consensus 34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-ev 112 (412)
T PF01770_consen 34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EV 112 (412)
T ss_pred ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HH
Confidence 3577877775 667777788888999999999999999999999999999999999999999999999999998776 56
Q ss_pred hhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhh
Q 012438 104 SVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSIIQR 183 (463)
Q Consensus 104 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 183 (463)
+-++++-...|+++-.++.+...++..+|..++.++|=.+..... .+.+..+++......+..+..+++|..++...-+
T Consensus 113 ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~-~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~ 191 (412)
T PF01770_consen 113 AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG-VSYFQLNYISLASVSLALLIALFLPMPKRSLFFH 191 (412)
T ss_pred HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHcCCCCccccee
Confidence 788899999999999999988888888888888888765554322 4567777776666666666667787766433222
Q ss_pred CCcHHHHHHHHHHHhCchhHHHHHHHHHHHhh-cccccCCchhhhh---cccchhhHHHHHHHHHHHhhhhhhHHHhhHH
Q 012438 184 SNDHQKAQKMLQRVRGIADVEAELNDLIRASS-ISKSITHPFKNIA---QRKYRPQLVMAILIPFFQQVTGINIVGLYSP 259 (463)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++..++......+.+..++..+...+..+... .....+..++.++ +..++++.++...+......+++..+..|..
T Consensus 192 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ 271 (412)
T PF01770_consen 192 RKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQ 271 (412)
T ss_pred ccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 22111100000000000000000000000000 0000011111221 2333455555666667777778888888888
Q ss_pred HHHHHc--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhH
Q 012438 260 VLFRTL--KLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYA 337 (463)
Q Consensus 260 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (463)
.+.++. ..+...-.|..-....+.+.++++..|++-.++.+...+.++......+.+++... ..++.
T Consensus 272 ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~-----------~t~~I 340 (412)
T PF01770_consen 272 SLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMS-----------FTGNI 340 (412)
T ss_pred HHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHH
Confidence 888777 22223334467777778888888999988555555444433333332222222221 12557
Q ss_pred HHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHH
Q 012438 338 YLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTA 391 (463)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 391 (463)
|...+...++...+.........-+ +.....+.-|..+|+.++...+-..+..
T Consensus 341 wv~Y~~yIif~~~y~fliTiA~~qI-A~~l~~e~yaLVFGiNtf~Al~LQtilT 393 (412)
T PF01770_consen 341 WVCYAGYIIFRSLYMFLITIASFQI-AKNLSEERYALVFGINTFVALVLQTILT 393 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhccccceeeeeeeHHHHHHHHHHheE
Confidence 7777777777766665543333333 4445567788888988877666555444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=120.16 Aligned_cols=174 Identities=13% Similarity=0.156 Sum_probs=119.2
Q ss_pred HHHHHHHHHhhhhhhHHHhhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHH
Q 012438 238 MAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQV 316 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 316 (463)
+.+.+..++...+......+.|.+++ +.|.+..+.+ +..+...++.+++.++.|+++||+|||+.+..+.....++.+
T Consensus 10 ~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 10 SALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIG-YAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 33444455555566666677777764 5788888877 788888888999999999999999999999888877777666
Q ss_pred HHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhh
Q 012438 317 MIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLP 396 (463)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 396 (463)
.+.+. ++.+..+....+.+.+.. ...+....+..|..|++.|+++.|+.+...++|..++|.+.+.
T Consensus 89 ~~~~~-------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~ 154 (395)
T PRK10054 89 AIPLV-------------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL 154 (395)
T ss_pred HHHHH-------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 223333333333333322 2344556666899999999999999999999999999999998
Q ss_pred hhhcccchhHHHHHHHHHHHH-HHHHHhcCCC
Q 012438 397 MLCHFKAGIFFFFGGLVLIMT-TFMHFFLPET 427 (463)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 427 (463)
+.+ .++...+...+++.++. ++..+..++.
T Consensus 155 l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 155 LVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 875 45444444444443333 3344445544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=122.61 Aligned_cols=177 Identities=14% Similarity=0.131 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHH
Q 012438 236 LVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQ 315 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 315 (463)
.+....+..+...........+.|.+.++.+.+..+.+ ...+...++..++.++.|++.||+|||+.+.++..+..++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~ 102 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIG-LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIIN 102 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHH
Confidence 33334444444444444567788999999999887777 88888999999999999999999999999998888888877
Q ss_pred HHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhh
Q 012438 316 VMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFL 395 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 395 (463)
++.... ++.+.......+.+.+.+..+ +....+++|.+|+++|++++++.+....+|..+++.+.+
T Consensus 103 ~~~~~~-------------~~~~~l~~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 168 (434)
T PRK11663 103 ILFGFS-------------SSLWAFALLWVLNAFFQGWGW-PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVG 168 (434)
T ss_pred HHHHHH-------------hHHHHHHHHHHHHHHHHHccc-hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666543 223333333334444444333 444566689999999999999999999999999999999
Q ss_pred hhhhcccchhHHHHHHH-HHHHHHHHHHhcCCC
Q 012438 396 PMLCHFKAGIFFFFGGL-VLIMTTFMHFFLPET 427 (463)
Q Consensus 396 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 427 (463)
.+.+..++...+...++ .++.+++..+.++|+
T Consensus 169 ~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 169 AIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99988887665554443 333444444555554
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=122.82 Aligned_cols=149 Identities=18% Similarity=0.131 Sum_probs=124.1
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGN 102 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 102 (463)
++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.|++.+++.|...
T Consensus 244 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~ 323 (393)
T PRK15011 244 INELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILG 323 (393)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45568899999999888888888899999999999999998887776666555555567788888889999988888777
Q ss_pred chhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCC
Q 012438 103 QSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPE 175 (463)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 175 (463)
+....+..|..| ++|++++++++....+|..+++.+++.+.+. .||+..|++.+++.++..+..++.||
T Consensus 324 ~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 324 GIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEI---WNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 777888899988 4699999999999999999999998877654 47999999988888887777777765
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-12 Score=119.60 Aligned_cols=180 Identities=12% Similarity=0.092 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHH
Q 012438 234 PQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLV 313 (463)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 313 (463)
++.+....+..+.............|.+.++.+.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAA-SLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA 89 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555566666666666777778888889999888877 888888999999999999999999999999988887777
Q ss_pred HHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhh
Q 012438 314 SQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQT 393 (463)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 393 (463)
+.+...+. ++.+.......+.+.+.+.. .+....++.|.+|+++|+.+.++.+....+|..+++.+
T Consensus 90 ~~~~~~~~-------------~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 155 (405)
T TIGR00891 90 GTLACGFA-------------PGYITMFIARLVIGIGMGGE-YGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155 (405)
T ss_pred HHHHHHHh-------------ccHHHHHHHHHHHHhhhhhh-hHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 76665543 22344444445555544433 34455666899999999999999999999999999999
Q ss_pred hhhhhhccc--chhHHHHHHHHHHHHHHHHHhcCCCC
Q 012438 394 FLPMLCHFK--AGIFFFFGGLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 394 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (463)
.+.+.+..+ +...+...++..+..++.....||++
T Consensus 156 ~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 156 YSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 988887765 55555555544444444445556543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-12 Score=120.56 Aligned_cols=378 Identities=13% Similarity=0.125 Sum_probs=207.3
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhc-----chhhhhHHHHHHHHHHHhhhhh----hhHHHHHHH
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALG-----RKVSILIGGVAFLAGSALGGSA----FNIYMLIFG 90 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~ 90 (463)
+.+++++|+++.+.....+...+...+- +++|.++|-+- ||+-++++.++..++.+..+.. .+.....+.
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 92 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVL 92 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence 3457778999999999998888887765 67899999763 5555666776665555554443 356666677
Q ss_pred HHHhhcccccccchhhHHhhhcCC--CCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHH
Q 012438 91 RLLLGVGIGFGNQSVPLYLSEMAP--PKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTI 168 (463)
Q Consensus 91 r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~ 168 (463)
-++..+|.+....++-+++.|... +++|+...+.......+|.+++..+++.+.+. .++|..|.+.+++..+..+
T Consensus 93 l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~---~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 93 LFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS---FGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---CCCeEEehHHHHHHHHHHH
Confidence 788889999999999999999984 34467778888888889999999888776654 4688889888877777666
Q ss_pred Hhhc-CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHH-HHHHH
Q 012438 169 GAIF-LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAIL-IPFFQ 246 (463)
Q Consensus 169 ~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 246 (463)
..++ .+|.++. . .++.....++. .+..... .++..+++++....+..+.... ..++.
T Consensus 170 ~~~~~~~e~~~~----~--~~~~~~~~~~~-----~~~~~~~----------~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 228 (433)
T PF03092_consen 170 VALFLLEERKVR----P--ADEVFSFGKEE-----VPCLFGS----------FREQLSELWRALQQRAIWQPILFFIFFF 228 (433)
T ss_pred HHHHhhhhcccc----c--cchhhcccccc-----cchhhHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6555 4431110 0 00000000000 0000000 0011111111111111121111 11111
Q ss_pred hhhhh--hHHHhhHHHHHHHcC---CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHH
Q 012438 247 QVTGI--NIVGLYSPVLFRTLK---LGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSI 321 (463)
Q Consensus 247 ~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (463)
..... ....+|.. ....+ +++...+ ....+..++.+++..+..+...+..-|+++....++..+..+.-...
T Consensus 229 ~~~~~~~~a~~fy~~--~~~~~gp~fs~~f~~-~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~l 305 (433)
T PF03092_consen 229 NLPPSISSASSFYFQ--TDALGGPHFSPSFYG-TLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLL 305 (433)
T ss_pred HhccCCCCccEEEEE--eccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEE
Confidence 10000 01011110 11223 4444444 55566666777777777666666666666655554443332221111
Q ss_pred HHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 012438 322 MAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF 401 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 401 (463)
. ......-+.++. +..+.--.+........+.|.... .+|+.|+...|+.+++...+.++|..++..+...+.+..
T Consensus 306 v-~~~n~~~Gi~d~--~f~lgd~~l~~~~~~i~~mP~lvl-~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 306 V-TRWNLDLGIPDQ--WFALGDTILEEVIGMIAFMPSLVL-AARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred E-EEEeeeeCcCCe--EEEEEhHHHHHHHHHHHHHHHHHH-HHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 000000001111 111112222222223333344433 479999999999999999999999999999988887766
Q ss_pred cc--------hhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012438 402 KA--------GIFFFFGGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 402 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (463)
+. ....+.+.++.+..+.+..++|+.++
T Consensus 382 ~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 382 GVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 52 22333333444555555556665443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-12 Score=117.86 Aligned_cols=181 Identities=14% Similarity=0.052 Sum_probs=130.6
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHH
Q 012438 234 PQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLV 313 (463)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 313 (463)
++......+.+++............|.+.++++.+..+.+ +..+...++..++.+..|++.||+|||+.+..+.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFG-LAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 3445555555555555556666777877788998888877 888888999999999999999999999999888888887
Q ss_pred HHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhh
Q 012438 314 SQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQT 393 (463)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 393 (463)
+.+...+. ++.+.....-.+.+.+.+.. .|....+++|.+|+++|+++.++.+....+|..+++.+
T Consensus 86 ~~~~~~~~-------------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 86 ASTATMFA-------------TGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred HHHHHHHh-------------cCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776653 22344444444555544433 35555666899999999999999999999999999999
Q ss_pred hhhhhh------cccchhHHHH-HHHHHHHHHHHHHhcCCCCC
Q 012438 394 FLPMLC------HFKAGIFFFF-GGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 394 ~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 429 (463)
.+.+.+ ..+|...+.. ++..++...+.++++||+++
T Consensus 152 ~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 152 SGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 888764 2466555444 34444445555666777653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=124.00 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=125.6
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhh
Q 012438 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVP 106 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 106 (463)
+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667889999999999999999999999999999999999999999989999999999999999999998888878888
Q ss_pred HHhhhcCCCCcccchhhh-hhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCCh
Q 012438 107 LYLSEMAPPKYRGTFNIG-FQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETP 177 (463)
Q Consensus 107 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~ 177 (463)
.++.|.+|++.|+...+. ++....+|.++++.+.+.+.+. .|||..|++.++..++..+..++ +++.+
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~---~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS---IGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 899999999999887655 6777889999999998877664 47999999888877665555444 54443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-12 Score=120.22 Aligned_cols=163 Identities=18% Similarity=0.110 Sum_probs=122.0
Q ss_pred hHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCC
Q 012438 252 NIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGG 331 (463)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (463)
.......|.+.++.+.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++.....+.
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---------- 79 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYG-YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---------- 79 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHH-HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH----------
Confidence 4555667778888898888877 88889999999999999999999999999998888877777666553
Q ss_pred CcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHH
Q 012438 332 FSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGG 411 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (463)
.+.+...+...+.+.+.+.. .+....+..|.+|++.|++++++.+....+|..+++.+.+.+.+..++...+...+
T Consensus 80 ---~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (399)
T TIGR00893 80 ---GAYVSLYILRVLLGAAEAPF-FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEG 155 (399)
T ss_pred ---cCHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 23444555555555554433 45556677899999999999999999999999999999999888888665555444
Q ss_pred HH-HHHHHHHHHhcCCCCC
Q 012438 412 LV-LIMTTFMHFFLPETKN 429 (463)
Q Consensus 412 ~~-~~~~~~~~~~~~~~~~ 429 (463)
+. .+..++..+..+++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 156 VLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHHhhheecCCCC
Confidence 43 3334444444555433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=115.79 Aligned_cols=167 Identities=19% Similarity=0.143 Sum_probs=121.8
Q ss_pred hhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhC
Q 012438 248 VTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLG 327 (463)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (463)
...........|.+.++.+.++.+.+ .......++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 18 ~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------ 90 (385)
T TIGR00710 18 PLGIDMYLPAFPEIAADLSTPASIVQ-MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS------ 90 (385)
T ss_pred HHHHHHhcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH------
Confidence 34445555667888889999888777 88888899999999999999999999999998888877777666543
Q ss_pred CCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHH
Q 012438 328 DHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFF 407 (463)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 407 (463)
++.+...+...+.+.+.+.. .+....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++...+
T Consensus 91 -------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 162 (385)
T TIGR00710 91 -------NNIETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIF 162 (385)
T ss_pred -------ccHHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 22334444444444444333 3445566689999999999999999999999999999999998888766544
Q ss_pred HH-HHHHHHHHHHHHHhcCCCCC
Q 012438 408 FF-GGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 408 ~~-~~~~~~~~~~~~~~~~~~~~ 429 (463)
.. .++..+..++..+..||+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 163 AFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC
Confidence 44 44444444444455565543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-11 Score=114.39 Aligned_cols=174 Identities=13% Similarity=0.141 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhhHhhHHHHH
Q 012438 236 LVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKF-GRKVLFLVGGIQMLV 313 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~ 313 (463)
.++.+..........++.+..++|.++.+ .+.+..++. ...........++.+++|+++||+ |||+.+.++.++..+
T Consensus 10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~-~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l 88 (493)
T PRK15462 10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAY-ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI 88 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 34444444455555777788888988764 688877777 677777888899999999999998 999999999888888
Q ss_pred HHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcc--cccchhHHHHHHHHHHHHHHH
Q 012438 314 SQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVNFLFTFLTA 391 (463)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~ 391 (463)
+.+++... ............+...+.+.. .+...++.+|.+|++ .|.+++++.+...++|+.++|
T Consensus 89 g~lll~~~------------~~~~~~~~l~l~li~iG~G~~-~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap 155 (493)
T PRK15462 89 GHVVLGAS------------EIHPSFLYLSLAIIVCGYGLF-KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAP 155 (493)
T ss_pred HHHHHHHh------------hcchhHHHHHHHHHHHhcccc-cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHH
Confidence 76654321 011111222222222332222 344456678999976 799999999999999999999
Q ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHHh
Q 012438 392 QTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFF 423 (463)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (463)
.+.+.+.+..++...+..+++..+.+++.+..
T Consensus 156 ~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 156 IACGYAQEEYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHHHHhhhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888766555555555555555444
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-12 Score=117.71 Aligned_cols=145 Identities=28% Similarity=0.342 Sum_probs=133.4
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchh-hhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccch
Q 012438 26 CKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKV-SILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 26 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 104 (463)
+|.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+.+.+..++.|++.+...+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 285 (352)
T cd06174 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPA 285 (352)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchh
Confidence 3778899999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred hhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcC
Q 012438 105 VPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFL 173 (463)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 173 (463)
...++.|..|+++|++.+++.+....+|..+++.+.+.+.+. .+|+..+++.+++.++..+..+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---GGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcchHHHHHHHHHHHHHHHheec
Confidence 999999999999999999999999999999999998777653 479999999999888877766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-11 Score=113.11 Aligned_cols=160 Identities=11% Similarity=0.020 Sum_probs=116.9
Q ss_pred HHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCC
Q 012438 253 IVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGF 332 (463)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (463)
......|.+.++++.+..+.+ +......++..++.+..|++.||+|||+.+..+..+..++.+...+.
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 94 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVG-LMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA----------- 94 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 344457888899999988887 77788888888999999999999999999999988888877666553
Q ss_pred cchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHH-
Q 012438 333 SEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGG- 411 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~- 411 (463)
++.+...+...+.+.+.+. ..+....+..|.+|+++|++++|+......++..++|.+.+.+.+..++...+...+
T Consensus 95 --~~~~~l~~~r~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 171 (390)
T PRK03545 95 --WNFTVLLISRIGIAFAHAI-FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG 171 (390)
T ss_pred --ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence 3344444444444433332 234455666899999999999999999999999999999999988888765544444
Q ss_pred HHHHHHHHHHHhcCCC
Q 012438 412 LVLIMTTFMHFFLPET 427 (463)
Q Consensus 412 ~~~~~~~~~~~~~~~~ 427 (463)
+.++.........|+.
T Consensus 172 ~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 172 GALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 3444434444445543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-11 Score=115.29 Aligned_cols=177 Identities=11% Similarity=0.140 Sum_probs=128.3
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHhhHHHHHHH---cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhHhhH
Q 012438 234 PQLVMAILIPFFQQVTGINIVGLYSPVLFRT---LKLGESTSLLLSALVAGGMGTVFAIVSMILADK-FGRKVLFLVGGI 309 (463)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~ 309 (463)
++.++.+....+....+++....++|.|+++ +|.+..+++ .......++..++.+++|+++|| +|||+.+.++..
T Consensus 9 p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag-~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~ 87 (475)
T TIGR00924 9 PKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAF-IIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGI 87 (475)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHH
Confidence 3344555555666666778888889988875 678877777 88888889999999999999999 899999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCccc---ccchhHHHHHHHHHH
Q 012438 310 QMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEI---RSAGQSITVAVNFLF 386 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g 386 (463)
+..++.+++.+. ++.+.......+.+.+.+. ..|....+.+|.+|++. |+++.++.+...++|
T Consensus 88 ~~~~g~~~~~~~-------------~~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG 153 (475)
T TIGR00924 88 VLMLGHFMLAMS-------------IYPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIG 153 (475)
T ss_pred HHHHHHHHHHhc-------------ccHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHH
Confidence 888887766543 2223333334444444333 23455566678888654 889999999999999
Q ss_pred HHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcC
Q 012438 387 TFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFFLP 425 (463)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (463)
..++|.+.+.+.++.++...+...++..+.+++.+...+
T Consensus 154 ~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 154 SFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999988876655555555554554444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.5e-12 Score=117.17 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=119.8
Q ss_pred hhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCC
Q 012438 249 TGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGD 328 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (463)
.....+....|.+.++++.+..+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 9 ~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------- 80 (379)
T TIGR00881 9 LVRKNFALAMPYLVEEIGLSKTDLG-LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS------- 80 (379)
T ss_pred HhHHhhhhhhHHHHHHhCCCHhHHH-HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-------
Confidence 3445566677888888899888877 88888999999999999999999999999999988888877776654
Q ss_pred CCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHh-hhhhhhhcccchhHH
Q 012438 329 HGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQ-TFLPMLCHFKAGIFF 407 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 407 (463)
++.+..++...+.+.+.+.. .+....+..|.+|+++|+.+.++.+....+|..+++. +.+.+.+..++...+
T Consensus 81 ------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 153 (379)
T TIGR00881 81 ------TSLWVMAALWALNGIFQGMG-WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVF 153 (379)
T ss_pred ------hhHHHHHHHHHHHHhhcccc-CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHH
Confidence 23444444444544444433 4566667789999999999999999999999999994 555555666655444
Q ss_pred HH-HHHHHHHHHHHHHhcCCCC
Q 012438 408 FF-GGLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 408 ~~-~~~~~~~~~~~~~~~~~~~ 428 (463)
.. +.+..+..++..+..++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 154 IVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHHHHheeeCCCc
Confidence 43 3344444455555555543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-12 Score=119.35 Aligned_cols=142 Identities=15% Similarity=0.085 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHHhhh
Q 012438 32 LLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSE 111 (463)
Q Consensus 32 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 111 (463)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44666778888999999999999999999999999999888888888888888888899999999999888888888889
Q ss_pred cCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCC
Q 012438 112 MAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPET 176 (463)
Q Consensus 112 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~ 176 (463)
..|+++|+++.++++....+|..+++.+.+.+.+. .||++.|++.++..++..+..+++++.
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW---FGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999998888887666543 479999999888887776666655443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-11 Score=114.17 Aligned_cols=162 Identities=16% Similarity=0.094 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHH
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQV 316 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 316 (463)
.....+..+.............|.+.++.+.++.+.. .......++..++.++.|+++||+|||+.+..+.....++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~ 98 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGA-FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTG 98 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3444444444445555566667777788998888777 888888999999999999999999999999999988888877
Q ss_pred HHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhh
Q 012438 317 MIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLP 396 (463)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 396 (463)
...+. ++.+...+.-.+.+.+.+.. .+....+..|.+|++.|+++.++......+|..+++.+.+.
T Consensus 99 ~~~~~-------------~~~~~l~~~r~l~G~g~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 99 LSGLA-------------SGVIMLTLSRFIVGMGMAGE-YACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHH-------------hHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 66554 33444444444555444332 34455666899999999999999999999999999999888
Q ss_pred hhhcccchhHHHHHHHH
Q 012438 397 MLCHFKAGIFFFFGGLV 413 (463)
Q Consensus 397 ~~~~~~~~~~~~~~~~~ 413 (463)
+.+..++...+....+.
T Consensus 165 l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 165 FAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HcccCCHHHHHHHHHHH
Confidence 88887876665554433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.3e-12 Score=118.02 Aligned_cols=148 Identities=16% Similarity=0.119 Sum_probs=124.5
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccch
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 104 (463)
+.|.+..+.+.+.+.+.++..++.++.|++.||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.++..+.
T Consensus 249 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 328 (406)
T PRK11551 249 GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSV 328 (406)
T ss_pred hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHH
Confidence 45788999999999999999999999999999999999998887777777777777788888888888899888888888
Q ss_pred hhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCC
Q 012438 105 VPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLP 174 (463)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 174 (463)
..+++.|.+|+++|++..++.+....+|..++|.+++.+.+.. .+|...++......++..+..+++.
T Consensus 329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--RSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--CchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988776543 2577777776666666555555443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.2e-11 Score=110.33 Aligned_cols=160 Identities=9% Similarity=-0.006 Sum_probs=118.2
Q ss_pred HHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCC
Q 012438 253 IVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGF 332 (463)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (463)
......|.+.++.+.++.+.+ .......++..++.++.|++.||+|||+.+..+..+.+++.+.....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------- 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAG-QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA----------- 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 333456778888999888877 77778888899999999999999999999999999888877665443
Q ss_pred cchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHH
Q 012438 333 SEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGL 412 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (463)
++.+..++.-.+.+.+.+.. .+....++.|.+|+++|+.+.++......++..++|.+.+.+.+..++...+...++
T Consensus 106 --~~~~~l~~~r~l~G~~~g~~-~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 182 (394)
T PRK10213 106 --NSFSLLLIGRACLGLALGGF-WAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAV 182 (394)
T ss_pred --ChHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 33445555555555554443 355666778999999999999999999999999999999999998887655544443
Q ss_pred HHHHH-HHHHHhcCCC
Q 012438 413 VLIMT-TFMHFFLPET 427 (463)
Q Consensus 413 ~~~~~-~~~~~~~~~~ 427 (463)
..+.. +......||+
T Consensus 183 l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 183 MGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHHCCCC
Confidence 33332 2233334553
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.8e-11 Score=106.10 Aligned_cols=175 Identities=15% Similarity=0.049 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHH
Q 012438 236 LVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQ 315 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 315 (463)
..+.+.+..|......+...-.+|.+-++++.+...++ ...+.+..+..+++++...+.||+.||+++.....+..++.
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG-~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n 92 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAG-QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN 92 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 34455566666666777788889999999999999888 89999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhh
Q 012438 316 VMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFL 395 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 395 (463)
++..+. ++.+..++.-.+.+...+.. .++...+..++.|+++|++++++......+...++.++..
T Consensus 93 ~l~alA-------------p~f~~Ll~aR~~~g~a~G~f-~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt 158 (394)
T COG2814 93 LLSALA-------------PSFAVLLLARALAGLAHGVF-WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158 (394)
T ss_pred HHHHHh-------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH
Confidence 888775 44555555555555555443 3566777789999999999999999999999999999999
Q ss_pred hhhhcccchh-HHHHHHHHHHHHHHHHHhcC
Q 012438 396 PMLCHFKAGI-FFFFGGLVLIMTTFMHFFLP 425 (463)
Q Consensus 396 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 425 (463)
++-|.+||.. |+..+++..+..+..+..+|
T Consensus 159 ~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 159 FLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999765 55556666666666777788
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.5e-12 Score=117.07 Aligned_cols=141 Identities=13% Similarity=0.002 Sum_probs=120.6
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhH--HHHHHHHHHhhcccccc
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNI--YMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~~~~ 101 (463)
++++.+..+.+.+.+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++. ..++...++.|++.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 312 (377)
T TIGR00890 233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT 312 (377)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccc
Confidence 4457788889999999999999999999999999999999999999998888877776643 33556678888888888
Q ss_pred cchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHH
Q 012438 102 NQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILT 167 (463)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~ 167 (463)
.+....++.|.+|+++|++..++.+....+|..++|.+.+.+.+. .||++.|++.++..++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 313 ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE---IGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh---hchhhHHHHHHHHHHHhc
Confidence 888888999999999999999999999999999999998776543 479999998887766543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-11 Score=112.71 Aligned_cols=177 Identities=15% Similarity=0.156 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHH
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQV 316 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 316 (463)
+............+........|.+.++.+.+..+.+ .......++..++.++.|+++||+|||+.+..+.....++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLH-IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3444444555555666667788999999998887776 778888889999999999999999999999988877777766
Q ss_pred HHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhh
Q 012438 317 MIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLP 396 (463)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 396 (463)
..... ++.+.......+.+.+.+.. .+....+..|.+|+++|+++.++.+....++..++|.+.+.
T Consensus 84 ~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~ 149 (392)
T PRK10473 84 LCSLA-------------ETSSLFLAGRFLQGIGAGCC-YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHL 149 (392)
T ss_pred HHHHh-------------CcHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65442 22233333333444333322 23455666899999999999999999999999999999888
Q ss_pred hhhcccchh-HHHHHHHHHHHHHHHHHhcCCCC
Q 012438 397 MLCHFKAGI-FFFFGGLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 397 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 428 (463)
+.+..++.. +.+.+.+..+..++.....+|++
T Consensus 150 l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 150 IMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 877777654 44444444555555556666654
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=115.40 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=124.8
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGN 102 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 102 (463)
++++|.++.+.+++.+.......++.++.|++.||+|||+.+.++.++..+......+.++.+.+.+.+++.|++.+...
T Consensus 227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 306 (375)
T TIGR00899 227 IHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILA 306 (375)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668889999998888877888899999999999999999988877776666666677888888889999999988888
Q ss_pred chhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCC
Q 012438 103 QSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPE 175 (463)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 175 (463)
+....++.|..|+ ++++++++++....+|..+++.+++.+.+. .||+..|++.++..++..+...+++|
T Consensus 307 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 307 GIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER---WSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHheecC
Confidence 8888899998875 567999999999999999999998877654 47999999988888877777666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-11 Score=112.62 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=119.4
Q ss_pred hhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCC
Q 012438 249 TGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGD 328 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (463)
.+........|.+..+.+.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++..........
T Consensus 13 ~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---- 87 (365)
T TIGR00900 13 IGTAITQVALPLYVLAGTGSASVLS-LAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL---- 87 (365)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 4445556677888888888877777 88888899999999999999999999999998887777766655543110
Q ss_pred CCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHH
Q 012438 329 HGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFF 408 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 408 (463)
...+.+...+...+.+.+.+.. .+....+..|..|+++|++++++.+....+|..++|.+.+.+.+..++...+.
T Consensus 88 ----~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 162 (365)
T TIGR00900 88 ----GGLNIWQVYVLAGILAIAQAFF-TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162 (365)
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 0013444444444444444433 45556677899999999999999999999999999999999988888766555
Q ss_pred HHHHHHHHHHHHHHh
Q 012438 409 FGGLVLIMTTFMHFF 423 (463)
Q Consensus 409 ~~~~~~~~~~~~~~~ 423 (463)
..++..+...+..+.
T Consensus 163 ~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 163 VDAVGFAISALLIVS 177 (365)
T ss_pred HHHHHHHHHHHHHHh
Confidence 554444444443333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.9e-11 Score=114.04 Aligned_cols=176 Identities=16% Similarity=0.102 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHH
Q 012438 236 LVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQ 315 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 315 (463)
.++.+....+........+..+.|.+.++++.+..+.+ +......++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMH-MVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 34445555555555666778889999999999887776 66777788889999999999999999999888877776666
Q ss_pred HHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhh
Q 012438 316 VMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFL 395 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 395 (463)
+..... ++.+..++...+.+.+.+.. .|....+..|.+|++.|+++.|+.+....+|..++|.+.+
T Consensus 90 ~~~~~~-------------~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g 155 (471)
T PRK10504 90 LFCALS-------------GTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG 155 (471)
T ss_pred HHHHHh-------------CCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 544332 22334444445555544433 3455666689999999999999999999999999999999
Q ss_pred hhhhcccchhHHHHHHH-HHHHHHHHHHhcCC
Q 012438 396 PMLCHFKAGIFFFFGGL-VLIMTTFMHFFLPE 426 (463)
Q Consensus 396 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 426 (463)
.+.++.++...+..... ..+..+......++
T Consensus 156 ~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 156 LLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99998886554444333 33333333444444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-11 Score=114.93 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHH
Q 012438 236 LVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQ 315 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 315 (463)
.+..+.+..+....-......-.|.+.++++.+..+.. +....+.++...+.+..|+++||+|||+.+..+..+..++.
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~-~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~ 85 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELL-WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLAS 85 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34444555555555556677778999999988887777 77778888888999999999999999999999998888887
Q ss_pred HHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceeccccccc-CCcccccchhHHHHHHHHHHHHHHHhhh
Q 012438 316 VMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEI-FPLEIRSAGQSITVAVNFLFTFLTAQTF 394 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 394 (463)
+..... ++.+..++.-.+.+.+.+.. .|.......+. .|+++|++++|+......+|..++|.+.
T Consensus 86 ~~~~~a-------------~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lg 151 (495)
T PRK14995 86 LAAAFS-------------PTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVG 151 (495)
T ss_pred HHHHHc-------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776653 33445555555555554433 23333333344 4779999999999999999999999999
Q ss_pred hhhhhcccchhHHHHHH-HHHHHHHHHHHhcCCCC
Q 012438 395 LPMLCHFKAGIFFFFGG-LVLIMTTFMHFFLPETK 428 (463)
Q Consensus 395 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 428 (463)
+.+.++.+|...+.... +..+..++..+.+|+.+
T Consensus 152 g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 152 GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999988765544433 34444444555566543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=109.29 Aligned_cols=173 Identities=14% Similarity=0.117 Sum_probs=118.9
Q ss_pred HHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchh----HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHH
Q 012438 240 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTS----LLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQ 315 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 315 (463)
..+..+...........++|.+.++.+.+..+. .+.......+...++.++.|+++||+|||+.+..+.....++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 98 (408)
T PRK09874 19 AWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVM 98 (408)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHH
Confidence 334444444555666778899999888876543 2467778888899999999999999999999988877777766
Q ss_pred HHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhh
Q 012438 316 VMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFL 395 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 395 (463)
..+... ++.+..++...+.+.+.+ ..+....+..+..|+++|+.+.++.+....+|..++|.+.+
T Consensus 99 ~~~~~~-------------~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 163 (408)
T PRK09874 99 VLMGLA-------------QNIWQFLILRALLGLLGG--FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG 163 (408)
T ss_pred HHHHHH-------------hhHHHHHHHHHHHHHhhh--hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555432 223333333333333322 23444555678889999999999999999999999999999
Q ss_pred hhhhcccchhHHHH-HHHHHHHHHHHHHhcCCC
Q 012438 396 PMLCHFKAGIFFFF-GGLVLIMTTFMHFFLPET 427 (463)
Q Consensus 396 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 427 (463)
.+.+..++...+.. ..+..+..+...+..+++
T Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 164 LLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99888776554444 333344444444555554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-11 Score=114.70 Aligned_cols=177 Identities=13% Similarity=0.128 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHH
Q 012438 235 QLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVS 314 (463)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 314 (463)
+.+..+.+..+.............|.+.++++.+..+.+ .......++..++.++.|+++||+|||+.+..+.++..++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 98 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAA-SLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG 98 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 344445555555555556666777888888998888777 7777788899999999999999999999999888888777
Q ss_pred HHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhh
Q 012438 315 QVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTF 394 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 394 (463)
.+...+. .+.+...+...+.+.+.+.. .+....++.|.+|++.|+.+.++.+....+|..+++.+.
T Consensus 99 ~~~~~~~-------------~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 99 TLACGFA-------------PGYWTLFIARLVIGMGMAGE-YGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHHHH-------------hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666553 22334444444444443322 344455668999999999999999999999999999999
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHhcCC
Q 012438 395 LPMLCHFKAGIFFFFGGLVLIMTTFMHFFLPE 426 (463)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (463)
+.+.+..++...+....+..+..++.....|+
T Consensus 165 ~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~ 196 (496)
T PRK03893 165 SLVVPVWGWRALFFIGILPIIFALWLRKNLPE 196 (496)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99988888776655544443333333333444
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=116.68 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=127.4
Q ss_pred HHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHH
Q 012438 239 AILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMI 318 (463)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 318 (463)
.+.+..+.............|.+.++.+.+..+.+ +......++..++.++.|+++||+|||+.+..+..+..++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQ-WVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 34444444445556677788999999998887777 88888999999999999999999999999998888887777665
Q ss_pred HHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhh
Q 012438 319 GSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPML 398 (463)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 398 (463)
... ++.+..++...+.+.+.+. ..+....++.|.+|++.|+++.++......+|..++|.+.+.+.
T Consensus 85 ~~~-------------~~~~~l~~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 85 GVA-------------PNLELMIIFRVIQGFGGGP-LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred hCc-------------CCHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 442 2334444444444444333 34556677789999999999999999999999999999999999
Q ss_pred hcccchhHHHHH-HHHHHHHHHHHHhcCCCC
Q 012438 399 CHFKAGIFFFFG-GLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 399 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 428 (463)
++.++...+... .+..+..++..+..|+++
T Consensus 151 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 151 ENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred cCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 888865544443 333334444445555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=109.28 Aligned_cols=174 Identities=10% Similarity=-0.023 Sum_probs=124.9
Q ss_pred HHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHH
Q 012438 240 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIG 319 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 319 (463)
.....+.............|.+.++.+.+..+.+ +..+...++..++.++.|++.||+|||+.+..+..+.+++.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~ 86 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHDVGISIPAAG-HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT 86 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHh-HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455666778888899999888777 888889999999999999999999999999999888888777665
Q ss_pred HHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhh
Q 012438 320 SIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLC 399 (463)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 399 (463)
.. ++.+...+...+.+.+.+... +....+..|..|+++|+.++++......++..++|.+.+.+.+
T Consensus 87 ~~-------------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 152 (382)
T PRK10091 87 LS-------------SSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ 152 (382)
T ss_pred Hh-------------CcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence 53 334444444455554443322 3344556788999999999999999999999999999998888
Q ss_pred cccchhHHHHHHH-HHHHHHHHHHhcCCCC
Q 012438 400 HFKAGIFFFFGGL-VLIMTTFMHFFLPETK 428 (463)
Q Consensus 400 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 428 (463)
..++...+...++ ..+..+...+..|+.+
T Consensus 153 ~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 153 EFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8776654444433 3333344445566643
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-10 Score=108.09 Aligned_cols=167 Identities=10% Similarity=0.012 Sum_probs=118.8
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHH
Q 012438 233 RPQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQML 312 (463)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 312 (463)
+++..+...+.++........+....|.+.++++.+..+.+ .......++..++.++.|++.||+|||+.+..+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMS-NTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34445555555555545556677778888899999888777 77788888999999999999999999999988887777
Q ss_pred HHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHh
Q 012438 313 VSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQ 392 (463)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 392 (463)
++.++..+. ++.+...+...+.+.+.+... +....++.|.+|++.|+.+.+..+....+++.++|.
T Consensus 84 i~~~l~~~~-------------~~~~~~~~~~~l~G~~~g~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 149 (394)
T PRK03699 84 LAVAGLMFS-------------HSLALFSIAMFVLGVVSGITM-SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPI 149 (394)
T ss_pred HHHHHHHHc-------------chHHHHHHHHHHHHHhhHhhc-cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 766655542 223344444444444444332 344556679999999999999998888899999999
Q ss_pred hhhhhhhc-ccchhHHHHHHHHH
Q 012438 393 TFLPMLCH-FKAGIFFFFGGLVL 414 (463)
Q Consensus 393 ~~~~~~~~-~~~~~~~~~~~~~~ 414 (463)
+.+.+.+. .++...+...++..
T Consensus 150 ~~~~l~~~~~gw~~~f~~~~~~~ 172 (394)
T PRK03699 150 IAAYLLARSIEWYWVYACIGLVY 172 (394)
T ss_pred HHHHHHhccccHHHHHHHHHHHH
Confidence 88887653 46665554444333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-11 Score=113.06 Aligned_cols=181 Identities=11% Similarity=0.062 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHH
Q 012438 236 LVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQ 315 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 315 (463)
.++...+...........+....|.+. +.+.+..+.+ +......++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~ 105 (438)
T TIGR00712 28 VFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELG-FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM 105 (438)
T ss_pred HHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhH-HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence 334344433333333333445566555 4688877777 88888899999999999999999999998888877777766
Q ss_pred HHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhh
Q 012438 316 VMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFL 395 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 395 (463)
+...... ....+.+...+...+.+.+.+..+. .....+.|.+|+++|++++++.+....+++.+++.+.+
T Consensus 106 ~~~~~~~---------~~~~~~~~l~~~~~l~g~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 106 LLMGFVP---------WATSSIAIMFVLLFLNGWFQGMGWP-PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred HHHhccc---------cccchHHHHHHHHHHHHHHhhcchH-HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 6544320 0001122233333344444443333 33345578999999999999999999999999988877
Q ss_pred hhhh-cccchhHHHH-HHHHHHHHHHHHHhcCCCC
Q 012438 396 PMLC-HFKAGIFFFF-GGLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 396 ~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 428 (463)
...+ ..+|...+.. +++.++..++..++.||++
T Consensus 176 ~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 176 LGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 6544 3455554444 4444454555556666543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=111.78 Aligned_cols=163 Identities=12% Similarity=0.066 Sum_probs=105.5
Q ss_pred HHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCc
Q 012438 254 VGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFS 333 (463)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (463)
+....|.+.++ +.+..+.+ .......++..++.++.|+++||+|||+.+..+.++.+++.+.+.+... .
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g-~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---------~ 116 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---------A 116 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---------c
Confidence 44566776666 88877766 8888899999999999999999999999999888888777766654310 0
Q ss_pred chhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhh-hhhhhcccchh-HHHHHH
Q 012438 334 EGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTF-LPMLCHFKAGI-FFFFGG 411 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~~~~ 411 (463)
..+.+..+....+.+.+.+....+. ...+.|.+|++.|++++|+.+....+|+.+.+++. ..+....+|.. +++.+.
T Consensus 117 ~~~~~~~~~~~~l~gi~~g~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~ 195 (452)
T PRK11273 117 TSSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAF 195 (452)
T ss_pred cccHHHHHHHHHHHHHHHhccchHH-HHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1123333333444444444333333 34457889999999999999999888875544433 23322335444 333344
Q ss_pred HHHHHHHHHHHhcCCCC
Q 012438 412 LVLIMTTFMHFFLPETK 428 (463)
Q Consensus 412 ~~~~~~~~~~~~~~~~~ 428 (463)
+..+..++..++.||++
T Consensus 196 ~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 196 AAILVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHHHHHccCCH
Confidence 44454555556666653
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-10 Score=108.67 Aligned_cols=139 Identities=11% Similarity=0.005 Sum_probs=96.4
Q ss_pred HHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHH
Q 012438 243 PFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIM 322 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 322 (463)
..+...........+.|.+.++++.+..+.+ .......++..++.++.|+++||+|||+.+..+.+...++.++..+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~- 121 (476)
T PLN00028 44 SFFTCFVSTFAAAPLLPIIRDNLNLTKSDIG-NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV- 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-
Confidence 3333333444556667788889999887776 66777888889999999999999999999888777777666555443
Q ss_pred HhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhh
Q 012438 323 AAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPM 397 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 397 (463)
.+.+...+...+.+.+.+. ..+ ...+++|.+|++.|+.+.|+.+...++|+.+++.+.+.+
T Consensus 122 ------------~s~~~l~~~r~l~G~~~~~-~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 122 ------------SSATGFIAVRFFIGFSLAT-FVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred ------------cCHHHHHHHHHHHHHHHHh-hHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333333433332 222 234557999999999999999988888888777666544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=108.05 Aligned_cols=165 Identities=15% Similarity=0.083 Sum_probs=115.7
Q ss_pred hhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCC
Q 012438 249 TGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGD 328 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (463)
..........|.+.++.+.+..+.+ .......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 22 ~~~~~~~p~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------- 93 (394)
T PRK11652 22 MAQTIYVPAIADMARDLNVREGAVQ-AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA------- 93 (394)
T ss_pred HHHHHHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------
Confidence 3344444557888889999988877 78888899999999999999999999999988887777766655432
Q ss_pred CCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHH
Q 012438 329 HGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFF 408 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 408 (463)
++.+...+...+.+.+.+.. .+....+..|.++++.++.+.+..+....++..++|.+.+.+.+..++...+.
T Consensus 94 ------~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~ 166 (394)
T PRK11652 94 ------HSLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYL 166 (394)
T ss_pred ------ccHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence 22333333334434333222 23444555788888899999999999999999999999999888877665444
Q ss_pred HH-HHHHHHHHHHHHhcCCCC
Q 012438 409 FG-GLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 409 ~~-~~~~~~~~~~~~~~~~~~ 428 (463)
.. ....+...+..+..||++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 167 FLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHHHHHhCCccC
Confidence 43 333334444445566653
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-11 Score=110.44 Aligned_cols=164 Identities=22% Similarity=0.264 Sum_probs=116.6
Q ss_pred hhhhHHHhhHH-HHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhC
Q 012438 249 TGINIVGLYSP-VLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLG 327 (463)
Q Consensus 249 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (463)
..........| .+.++.+.+..+.+ +......++..++.++.|+++||+|||+.+..+..+..++.+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------ 82 (352)
T PF07690_consen 10 FGFSIISPALPLYLAEELGLSPSQIG-LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA------ 82 (352)
T ss_dssp HHHHHHHHHHH-HHHCCSTTTSHCHH-HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh------
Confidence 34445556667 66677888888877 88888999999999999999999999999999888888884444431
Q ss_pred CCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHH
Q 012438 328 DHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFF 407 (463)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 407 (463)
++.+..++...+.+.+.+.. .+....+..|.+|+++|++++++.+....+|..++|.+.+.+.+..++...+
T Consensus 83 -------~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~ 154 (352)
T PF07690_consen 83 -------SNFWLLLIARFLLGIGSGFF-SPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAF 154 (352)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHH
T ss_pred -------hhHHHHhhhccccccccccc-cccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccc
Confidence 22334445555555554333 4556677789999999999999999999999999999999999887765544
Q ss_pred HHHHHH-HHHHHHHHHhcCCC
Q 012438 408 FFGGLV-LIMTTFMHFFLPET 427 (463)
Q Consensus 408 ~~~~~~-~~~~~~~~~~~~~~ 427 (463)
...++. .+..++...+.+++
T Consensus 155 ~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 155 LISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp HHHHHHHHHHHHHHHCCC---
T ss_pred ccccchhhhhhhhHhhhhhhc
Confidence 444444 44433333444433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-10 Score=107.40 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=114.1
Q ss_pred hhhhhhHHHhhHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhh
Q 012438 247 QVTGINIVGLYSPVLF-RTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQ 325 (463)
Q Consensus 247 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (463)
...+.+....+.+.++ ++.+.+....+ .......+...+..++.|+++||+|||+.+..+..+..++.+.+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g-l~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~---- 96 (400)
T PRK11646 22 VVLGFFVVFPLISIRFVDQLGWAAVMVG-IALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA---- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHH-HHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh----
Confidence 3344455555556554 66788877777 77777888888889999999999999999999888888877766543
Q ss_pred hCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchh
Q 012438 326 LGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGI 405 (463)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 405 (463)
++.+.......+.+.+.+. ..|...++..|.+|+++|+++.|+.+....+|..++|.+.+.+. ..++..
T Consensus 97 ---------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~ 165 (400)
T PRK11646 97 ---------HEPWLLWLSCILSGLGGTL-FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRL 165 (400)
T ss_pred ---------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence 2234444444444444332 23444566679999999999999999999999999999999988 556544
Q ss_pred HHHH-HHHHHHHHHHHHHhcCC
Q 012438 406 FFFF-GGLVLIMTTFMHFFLPE 426 (463)
Q Consensus 406 ~~~~-~~~~~~~~~~~~~~~~~ 426 (463)
.+.. +...++..++..+..|+
T Consensus 166 ~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 166 VCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 4333 33333333344444554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-11 Score=111.40 Aligned_cols=169 Identities=15% Similarity=0.060 Sum_probs=117.7
Q ss_pred hhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCC
Q 012438 249 TGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGD 328 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (463)
.+........|.+.++.+.+..+.+ .......++..++.++.|+++||+|||+.+..+..+.+++...+......
T Consensus 31 ~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~---- 105 (417)
T PRK10489 31 FGLGLLGVAVPVQIQMMTGSTLQVG-LSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL---- 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc----
Confidence 4455666778888888887776666 88889999999999999999999999999888777766655544332100
Q ss_pred CCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHH
Q 012438 329 HGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFF 408 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 408 (463)
..+..+...+...+.+.+.+.. .+....+..|..|+++|+++.++.+....+|..++|.+.+.+.+..++...+.
T Consensus 106 ----~~~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~ 180 (417)
T PRK10489 106 ----PEPSLLAIYLLGLWDGFFGSLG-VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYG 180 (417)
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHH-HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 0122233333333333333322 23334455788999999999999999999999999999999988877665555
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 012438 409 FGGLVLIMTTFMHFFLPET 427 (463)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~ 427 (463)
..++..+...+..+.+|++
T Consensus 181 ~~~~~~~~~~~~~~~l~~~ 199 (417)
T PRK10489 181 LAAAGTFITLLPLLRLPAL 199 (417)
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 5555555555555556654
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.3e-11 Score=115.17 Aligned_cols=154 Identities=15% Similarity=0.074 Sum_probs=112.4
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh--hH--HHHHHHHHHhhcccc
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF--NI--YMLIFGRLLLGVGIG 99 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~--~~l~~~r~l~G~~~~ 99 (463)
++.|.+.....+......++..++.++.|+++||+|||+.++.+..+.+++.++.+... +. ......-++.+.+.+
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (479)
T PRK10077 299 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 378 (479)
T ss_pred HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 44566766677777778888899999999999999999999999999888877765431 11 122223344444443
Q ss_pred c-ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhc---ccCCcchhHHHHHhhHHHHHHHHHHhhc-CC
Q 012438 100 F-GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQ---KIKGGWGWRISLAMAAAPASILTIGAIF-LP 174 (463)
Q Consensus 100 ~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~ 174 (463)
. ..+....++.|.+|+++|++++++......+|.++++.+...+. ...+..+|++.|++.++.+++..+..++ .|
T Consensus 379 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 379 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred ccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 3 33677899999999999999999999999999988876654333 2223467888998888877776666554 67
Q ss_pred CCh
Q 012438 175 ETP 177 (463)
Q Consensus 175 e~~ 177 (463)
|++
T Consensus 459 e~~ 461 (479)
T PRK10077 459 ETK 461 (479)
T ss_pred cCC
Confidence 764
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-10 Score=108.37 Aligned_cols=175 Identities=13% Similarity=0.116 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhHhhHHHHHH
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADK-FGRKVLFLVGGIQMLVS 314 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~ 314 (463)
++.+....+..-.+++....+++.|++ +++.+..... ...........+..+++|+++|| +|||+.+..+.++..++
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~-~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g 94 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAF-ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG 94 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH
Confidence 444444444555667777777777764 5787777776 66666666677777899999999 99999999999999988
Q ss_pred HHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcc--cccchhHHHHHHHHHHHHHHHh
Q 012438 315 QVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVNFLFTFLTAQ 392 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~ 392 (463)
.+.+.+.. .......+...+.+.+.+.. .|....++.|.+|++ .|+.++++.+...++|..++|.
T Consensus 95 ~~~~~~~~------------~~~~ll~~~~~l~~ig~g~~-~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~ 161 (489)
T PRK10207 95 YFMTGMSL------------LKPDLIFIALGTIAVGNGLF-KANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS 161 (489)
T ss_pred HHHHHHhc------------cchhHHHHHHHHHHhccccc-cCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence 87776531 11122223344444443333 345566778999877 4578999999999999999999
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcC
Q 012438 393 TFLPMLCHFKAGIFFFFGGLVLIMTTFMHFFLP 425 (463)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (463)
+.+.+.++.+|...+....+..+.+++.+...+
T Consensus 162 l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 162 LAPVIADKFGYSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999998876665555555555554444443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-11 Score=115.22 Aligned_cols=151 Identities=15% Similarity=-0.033 Sum_probs=112.3
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHh--hhhhhhHHHHHHHHHHhhcccc
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSAL--GGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
+++++|++..+.++..+.+.++..++.+++|+++||+|||+.+.....+..++..+ ....++.+.+.+.+++.|++..
T Consensus 285 l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 364 (467)
T PRK09556 285 AFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVF 364 (467)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Confidence 45667899999999999999999999999999999999998876655444443322 2234566677788888886544
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHH-HHHHHHHhhhhhcc-c--------CCcchhHHHHHhhHHHHHHHHHH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAI-GVLSANLLNYGTQK-I--------KGGWGWRISLAMAAAPASILTIG 169 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~~~~-~--------~~~~gwr~~f~~~~~~~~~~~~~ 169 (463)
...........|.+|+++|+.+.++.+....+ |..++|.+.+.+.+ . ....||+..|++..+..++..+.
T Consensus 365 ~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 444 (467)
T PRK09556 365 GPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICL 444 (467)
T ss_pred hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHH
Confidence 33333346677999999999999999988886 76888888777766 1 00357999998887777766555
Q ss_pred hhc
Q 012438 170 AIF 172 (463)
Q Consensus 170 ~~~ 172 (463)
.++
T Consensus 445 ~~~ 447 (467)
T PRK09556 445 MAI 447 (467)
T ss_pred HHH
Confidence 543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=106.31 Aligned_cols=163 Identities=10% Similarity=-0.055 Sum_probs=114.3
Q ss_pred hhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCC
Q 012438 250 GINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDH 329 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (463)
....+....|.+.++++.+..+.+ +..+...++..++.+..|+++||+|||+.+.........+.. ....
T Consensus 6 ~~~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~-------- 75 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDVSKEELG-LLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD-------- 75 (368)
T ss_pred HHHHHHhhHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH--------
Confidence 344566777888899999888777 778888899999999999999999988876544333323221 1111
Q ss_pred CCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHH
Q 012438 330 GGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFF 409 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 409 (463)
..+....++.-.+.+.+.+.. +......+|.+|+++|+++.++.+....+|..+++.+.+.+.++.+|...+..
T Consensus 76 ----~~~~~~l~~~R~l~G~g~~~~--~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~ 149 (368)
T TIGR00903 76 ----PFNYEWLLACQLLAALGQPFL--LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP 149 (368)
T ss_pred ----hccHHHHHHHHHHHHhHhHHH--HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 022334444445555444322 22333447899999999999999999999999999999999988888766555
Q ss_pred -HHHHHHHHHHHHHhcCCCC
Q 012438 410 -GGLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 410 -~~~~~~~~~~~~~~~~~~~ 428 (463)
+++..+..++.++.+||.+
T Consensus 150 ~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 150 IAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 5555555566666777754
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-10 Score=106.27 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=105.6
Q ss_pred HHHHHHHhhhhhhHHHhhHHH-HHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHH
Q 012438 240 ILIPFFQQVTGINIVGLYSPV-LFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMI 318 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 318 (463)
..+.++...........+.|. +.++.+.+..+.+ +......++..++.++.|+++||+|||+.+..+..+..++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~ 84 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLG-NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA 84 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhh-HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 344444445556667778885 6678898888877 88888999999999999999999999999999988888877766
Q ss_pred HHHHHhhhCCCCCCcch-hHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhh
Q 012438 319 GSIMAAQLGDHGGFSEG-YAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPM 397 (463)
Q Consensus 319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 397 (463)
... + +.+..++...+.+.+.+ .. +....+++|.+|+++|+.+.++.....++|..+++.+.+.+
T Consensus 85 ~~~-------------~~~~~~~~~~~~~~g~~~~-~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 85 GLA-------------VQSYSVLLLLRLFIGIAGG-SF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred HHH-------------hhhHHHHHHHHHHHHHhch-hh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 553 2 33444444444444322 22 23455668999999999999999988888888777777665
Q ss_pred hh
Q 012438 398 LC 399 (463)
Q Consensus 398 ~~ 399 (463)
..
T Consensus 150 ~~ 151 (366)
T TIGR00886 150 IG 151 (366)
T ss_pred HH
Confidence 54
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=108.00 Aligned_cols=159 Identities=11% Similarity=0.123 Sum_probs=113.5
Q ss_pred HhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcc
Q 012438 255 GLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSE 334 (463)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (463)
..-+|.+.++++.+..... ...+...++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 36 ~p~l~~i~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------------- 101 (413)
T PRK15403 36 QPGIINVVRDFNADVSLAP-ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------------- 101 (413)
T ss_pred ccCHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------------
Confidence 3344566678888877777 77788889999999999999999999999998887777766655542
Q ss_pred hhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHH
Q 012438 335 GYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVL 414 (463)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (463)
++.+..++.-.+.+.+.+. ..+....+..|.+|++.+++++++.+....++..++|.+.+.+.+..++...+...++..
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~ 180 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMG 180 (413)
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2333444444444444332 233445666799999999999999999999999999999998888877765554444443
Q ss_pred HHHH-HHHHhcCCCC
Q 012438 415 IMTT-FMHFFLPETK 428 (463)
Q Consensus 415 ~~~~-~~~~~~~~~~ 428 (463)
+... ...+..||++
T Consensus 181 ~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 181 LIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHhCCCCc
Confidence 3333 3345567654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=107.70 Aligned_cols=168 Identities=14% Similarity=0.108 Sum_probs=114.6
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHH
Q 012438 242 IPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSI 321 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (463)
+..+....+........+.+.++.+.+..... +......+...+..++.|+++||+|||+++..+..+..++.+.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~ 88 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLKELHYPDWSQP-LLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG 88 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH
Confidence 33333333333444555566777877766665 78888889999999999999999999999999988887766654432
Q ss_pred HHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 012438 322 MAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF 401 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 401 (463)
.+. +....+.+.+.+ ...|...+++.|.+|+++|++++|+.+....++..++|.+.|.+.+..
T Consensus 89 -------------~~~---~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~ 151 (393)
T PRK11195 89 -------------IHP---LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH 151 (393)
T ss_pred -------------HHH---HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 222233333333 335677777799999999999999999999999999999999998864
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCC
Q 012438 402 KAGIFFFFGGLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (463)
+...+.....+.+.+.+..+.+||.+
T Consensus 152 -~~~~~~i~~~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 152 -AEAALAVCALIYLLAALFNLFIPRLG 177 (393)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 33333333333333344455666543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-11 Score=112.02 Aligned_cols=137 Identities=15% Similarity=0.085 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHHhhhc
Q 012438 33 LTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEM 112 (463)
Q Consensus 33 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 112 (463)
.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45666777888899999999999999999999999999999888888888888888999999999998888888889999
Q ss_pred CCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc
Q 012438 113 APPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF 172 (463)
Q Consensus 113 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 172 (463)
+|+++|+++.++++....+|..+++.+.+.+.+. .||+..|.+.++..++..+..++
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS---FGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998777654 47999999988887776665544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.9e-11 Score=113.32 Aligned_cols=161 Identities=19% Similarity=0.119 Sum_probs=113.5
Q ss_pred HhhHHHHHHHcCCC--------CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhh
Q 012438 255 GLYSPVLFRTLKLG--------ESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQL 326 (463)
Q Consensus 255 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (463)
....+....+.+.+ ..+.+ +......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---- 122 (481)
T TIGR00879 48 GGALALPAFEFKFTSANSDSYSSSLWG-LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---- 122 (481)
T ss_pred hhhhhcHHHHHhcCCcccCCCChhHHH-HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc----
Confidence 33444444454444 55555 888889999999999999999999999999988888877776664431
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhh---hhhhhcccc
Q 012438 327 GDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTF---LPMLCHFKA 403 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~---~~~~~~~~~ 403 (463)
.....+..++...+.+.+.+.. .+....++.|.+|+++|+.+.++.+....+|..+++.+. +...+..++
T Consensus 123 ------~~~~~~~~~~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w 195 (481)
T TIGR00879 123 ------FALSVEMLIVGRVLLGIGVGIA-SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGW 195 (481)
T ss_pred ------cccchHHHHHHHHHHHhhhhHH-HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccH
Confidence 1112234444555555554433 345566778999999999999999999999999999988 555556666
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCC
Q 012438 404 GIFFFFGGLVLIMTTFMHFFLPET 427 (463)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~ 427 (463)
...+...++..+..++..++++|+
T Consensus 196 ~~~f~~~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 196 RIPLGLQLIPAGLLFLGLFFLPES 219 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 665555555555555556667765
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-11 Score=114.93 Aligned_cols=143 Identities=10% Similarity=-0.039 Sum_probs=117.8
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhh--cchhhhhH--HHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccc
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRAL--GRKVSILI--GGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (463)
++.|.+..+.+++.+...++..+++++.|+++||. ++|+...+ +.++.+++.+++...++++.+++.+++.|++.+
T Consensus 269 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g 348 (455)
T TIGR00892 269 KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFG 348 (455)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc
Confidence 34588999999999999999999999999999983 34433333 344445555666778899999999999999999
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTI 168 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~ 168 (463)
...+...+++.|.+|++++++.+++++....+|.+++|.+++.+.+..+ +|++.|++.++..++..+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 349 SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999887765432 599999998887665544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-09 Score=96.12 Aligned_cols=323 Identities=18% Similarity=0.170 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHHhhhcCCCC
Q 012438 37 TSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPK 116 (463)
Q Consensus 37 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 116 (463)
.++-+....+++++.+.+.|+.|+|..+.++...+..-.+..-+- |-+-+++.-.+.|+|.+..+...-.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 677788889999999999999999999999999998877776555 5667888999999999999999999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHhhhhhcccCCc-----chhH-H----------HHHhhHHH---HHHHHHHhhcCCCCh
Q 012438 117 YRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGG-----WGWR-I----------SLAMAAAP---ASILTIGAIFLPETP 177 (463)
Q Consensus 117 ~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----~gwr-~----------~f~~~~~~---~~~~~~~~~~~~e~~ 177 (463)
.+.+..++.......+.++|+.+-..+....+. .+-+ + ...+.+++ ..+..+...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999999999999999998775544332221 1111 1 11111111 111222222333221
Q ss_pred HHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhh
Q 012438 178 NSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLY 257 (463)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
. ..+++. . +....+.++...+....++++..... ++........+...
T Consensus 215 ~-~~~~~~----------------------------~--~~~~~~~l~~~~~l~~~~~ml~L~~~-f~~tG~~~Sf~~~i 262 (461)
T KOG3098|consen 215 V-VNCKSS----------------------------S--ETSFSELLKLTFKLLKTPKMLLLFPF-FFYTGLETSFWISI 262 (461)
T ss_pred h-hhhhhh----------------------------c--cccHHHHHHHHHHHhcCHhHHHHHHH-HHHHHHHHHHHHhc
Confidence 0 000000 0 00011122333333333333332222 22221222222222
Q ss_pred HHHHH---HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---cCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCC-
Q 012438 258 SPVLF---RTLKLGESTSLLLSALVAGGMGTVFAIVSMILADK---FGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHG- 330 (463)
Q Consensus 258 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 330 (463)
.|.-+ ...+.+............+.+.+.+....+.+.+| +||++.+.++..+..+..++.........+..+
T Consensus 263 ypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t 342 (461)
T KOG3098|consen 263 YPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT 342 (461)
T ss_pred cchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCC
Confidence 23322 13344444444456666777788888888887765 578888887777766665555443221111000
Q ss_pred ----CCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhh
Q 012438 331 ----GFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTF 394 (463)
Q Consensus 331 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 394 (463)
....+......++..+.+.+-+ .+....+.++...+| +.|..+.++..+-..+++.++-...
T Consensus 343 ~~~~~~~~~~~~~~~ii~~l~G~~D~-~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 343 DSPPLLFTPSYYLALIIGFLLGFGDA-CFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred cccccccccchhHHHHHHHHHhhHHH-HHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhh
Confidence 0111223344444444444443 334445555567774 8889998988888877776655443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.9e-10 Score=108.17 Aligned_cols=147 Identities=20% Similarity=0.150 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhc
Q 012438 274 LLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCY 353 (463)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (463)
+.+.....++.+++.++.|++.||+|||+.+..+.++..++.++..... .. .+....+..++.-.+.+.+.+.
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~-----~~--~~~~~~~~~~~~r~l~G~~~g~ 131 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSP-----GS--SPKSVMATLCFWRFWLGVGIGG 131 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcc-----Cc--ccchHHHHHHHHHHHHHHHHhh
Confidence 3778888899999999999999999999999888888877766554421 00 0001123444555555555544
Q ss_pred cccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhh-----------------------cccchhHHHHH
Q 012438 354 SWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLC-----------------------HFKAGIFFFFG 410 (463)
Q Consensus 354 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 410 (463)
. .+....+.+|.+|++.|+++.++.+....+|..+++.+...+.. ..+|...+.+.
T Consensus 132 ~-~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~ 210 (502)
T TIGR00887 132 D-YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG 210 (502)
T ss_pred h-hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence 4 34556777999999999999999999999999888877655432 12466666666
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 012438 411 GLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~ 428 (463)
++..+...+..+++||+.
T Consensus 211 ~ip~~i~~~~~~~lpESp 228 (502)
T TIGR00887 211 AVPALLALYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHHHHhCCCCH
Confidence 665566666667788863
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.5e-10 Score=104.92 Aligned_cols=157 Identities=15% Similarity=0.065 Sum_probs=109.1
Q ss_pred hhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcch
Q 012438 256 LYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEG 335 (463)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (463)
...|.+.++.+.++.+.+ .......++..++.++.|+++||+|||+.+..+..+..++.+..... +
T Consensus 27 p~~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------------~ 92 (401)
T PRK11043 27 PAFKAIQADLQTSASAVS-ASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-------------E 92 (401)
T ss_pred hhHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-------------c
Confidence 334455678888877777 88888899999999999999999999999988877777666655442 2
Q ss_pred hHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHH
Q 012438 336 YAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLI 415 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (463)
+.+...+...+.+.+.+.. .+....+..|.+|++.++...+..+....++..++|.+.+.+.+..++...+....+..+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~ 171 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITL 171 (401)
T ss_pred CHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2333333334433332222 233345567889988899999999888999999999999999988887655444444443
Q ss_pred HHHHHHHhcCCC
Q 012438 416 MTTFMHFFLPET 427 (463)
Q Consensus 416 ~~~~~~~~~~~~ 427 (463)
...+..+..++.
T Consensus 172 ~~~~~~~~~~~~ 183 (401)
T PRK11043 172 LLILPTLRLKPS 183 (401)
T ss_pred HHHHHHHHcCCC
Confidence 334444444443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-10 Score=105.96 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=114.4
Q ss_pred hhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCC
Q 012438 250 GINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDH 329 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (463)
....+....|.+.++++.+..+.. .......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------- 98 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFNAGAEWVP-TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-------- 98 (406)
T ss_pred hhhhHhcchHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--------
Confidence 334444556777788888877777 77788888999999999999999999999988887777776665443
Q ss_pred CCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHH
Q 012438 330 GGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFF 409 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 409 (463)
++.+..+....+.+.+.+.. .+.......|.+|++.|..+.++......++..++|.+.+.+.+..++...+.+
T Consensus 99 -----~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 99 -----QSIEQFTLLRFLQGIGLCFI-GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred -----ccHHHHHHHHHHHHhHhhhH-HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 22333333334334333322 244556668999999999999999888889999999999998888776554444
Q ss_pred -HHHHHHHHHHHHHhcCCCC
Q 012438 410 -GGLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 410 -~~~~~~~~~~~~~~~~~~~ 428 (463)
+++..+..+..++..||++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 3343443333444566554
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-10 Score=105.63 Aligned_cols=151 Identities=10% Similarity=-0.017 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHH
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQV 316 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 316 (463)
++.+....+.............|.+.++.+.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G-~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~ 86 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVG-VVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA 86 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555556667778889999999998877776 888899999999999999999999999999998888887776
Q ss_pred HHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhh
Q 012438 317 MIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLP 396 (463)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 396 (463)
..... ++.+..++...+.+.+.+.. .+.......+..|+++|+++++..+....+|..++|.+.+.
T Consensus 87 ~~~~~-------------~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 152 (381)
T PRK03633 87 GLGLM-------------VGFWSWLAWRFVAGIGCAMI-WVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK 152 (381)
T ss_pred HHHHh-------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 65543 23444444445555444433 23333333577788899999999999999999999999988
Q ss_pred hhhccc
Q 012438 397 MLCHFK 402 (463)
Q Consensus 397 ~~~~~~ 402 (463)
+.+...
T Consensus 153 l~~~~~ 158 (381)
T PRK03633 153 VSTELM 158 (381)
T ss_pred cccccc
Confidence 876543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.6e-10 Score=106.53 Aligned_cols=151 Identities=15% Similarity=0.029 Sum_probs=104.5
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHH
Q 012438 242 IPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSI 321 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (463)
+..+....+......+.+.+.++.+.+..+.+ ...+...++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~ 98 (402)
T TIGR00897 20 IGVVVFMTGDGLEQGWLSPFLKALGLSPQQSA-SAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF 98 (402)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555677888888999888777 88889999999999999999999999999998888887775543221
Q ss_pred HHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHH-HHHHhhhhhhhhc
Q 012438 322 MAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFT-FLTAQTFLPMLCH 400 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~~~~~~~ 400 (463)
.. ...+.+.......+.+.+.+.. .+.......+.+|+++|++++|+.+....+|. .++|.+.+.+.+.
T Consensus 99 ~~---------~~~~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~ 168 (402)
T TIGR00897 99 GL---------GHANYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA 168 (402)
T ss_pred hc---------cCccHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 00 0112333333333444433322 22233444678899999999999999999986 5788888888877
Q ss_pred ccc
Q 012438 401 FKA 403 (463)
Q Consensus 401 ~~~ 403 (463)
.++
T Consensus 169 ~g~ 171 (402)
T TIGR00897 169 FGE 171 (402)
T ss_pred cch
Confidence 763
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-11 Score=110.14 Aligned_cols=180 Identities=15% Similarity=0.034 Sum_probs=138.6
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHH
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQV 316 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 316 (463)
...+.+....+..--+.+..-.+..-+.++.++...+ ++.....+...++++++|++.||+.||+++.+|..+..++.+
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~G-ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~ 113 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELG-LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVF 113 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhcc-chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHH
Confidence 3344444444545555555555555566777877777 889999999999999999999999999999999999988888
Q ss_pred HHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhh
Q 012438 317 MIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLP 396 (463)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 396 (463)
...+. ...|...++-.+.+.+-+ .+.|+...+++|.+|..+|++++++.++....|..+|-.....
T Consensus 114 ~~~fs-------------~~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~ 179 (493)
T KOG1330|consen 114 ASGFS-------------NHFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV 179 (493)
T ss_pred HHHHH-------------HHHHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence 87775 456677777777776655 4567888888999999999999999999999999998888887
Q ss_pred hhhccc-ch-hHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 012438 397 MLCHFK-AG-IFFFFGGLVLIMTTFMHFFLPETKNVP 431 (463)
Q Consensus 397 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (463)
+.+..+ |. .+...+++.++++++..++.+|++++.
T Consensus 180 va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga 216 (493)
T KOG1330|consen 180 VASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA 216 (493)
T ss_pred eccCccceEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence 777766 43 345556666667777777777776543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=108.44 Aligned_cols=142 Identities=9% Similarity=-0.021 Sum_probs=124.9
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccch
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 104 (463)
|.|.+..+.|.+.+...++..++.++.+++.||+|+|+.+.++.++.++..++.+++++.+.+++.+++.|++.+...+.
T Consensus 234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~ 313 (382)
T TIGR00902 234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLA 313 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhcCCCCcccchhhhhh-HHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhh
Q 012438 105 VPLYLSEMAPPKYRGTFNIGFQ-LCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAI 171 (463)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~ 171 (463)
...++.+. |+++|++..++++ ...++|..+++.+++.+.+.. |+ ..|++.++++++..++..
T Consensus 314 ~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 314 AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---GA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHHHHH
Confidence 99999998 9899999999986 577899999999998887653 55 556667776665544433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=110.05 Aligned_cols=152 Identities=12% Similarity=0.038 Sum_probs=111.5
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhh---h-hhHHHHHHHHHHhhcccc
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGS---A-FNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~l~~~r~l~G~~~~ 99 (463)
+++|.+......+.....+...++.++.|+++||+|||+.+..+.++..++.+.... . ++.+.+++..++.|++.+
T Consensus 279 ~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (438)
T PRK09952 279 QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHD 358 (438)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 445667666656666666777888999999999999999988887766555433322 1 234455556677788888
Q ss_pred cccchhhHHhhhcCCCCcccchhhhhh-HHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCC
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIGFQ-LCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPET 176 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~ 176 (463)
...+...+++.|.+|++.|+...++.. .+..+|..++|.+.+.+.+..+ .+|+..+...++.+++..+..+.++|+
T Consensus 359 ~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 359 MVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888888999999999999988888854 4455888889988877755332 358888888888877777776667664
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-10 Score=106.32 Aligned_cols=161 Identities=17% Similarity=0.152 Sum_probs=118.3
Q ss_pred hHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCC
Q 012438 252 NIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGG 331 (463)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (463)
.......|.+.++.+.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++.......
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~---------- 76 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQ-MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA---------- 76 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3444667788888898888777 78888889999999999999999999999999888888877776553
Q ss_pred CcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHH-HH
Q 012438 332 FSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFF-FG 410 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~ 410 (463)
++.+...+...+.+.+.+.. .+....+..|.+|++.|+++.++.+....+|..++|.+.+.+.+..++...+. .+
T Consensus 77 ---~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 152 (377)
T PRK11102 77 ---QTIDQLIYMRFLHGLAAAAA-SVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA 152 (377)
T ss_pred ---ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 22333344444444443322 34445666899999999999999999999999999999999988877655444 34
Q ss_pred HHHHHHHHHHHHhcCCC
Q 012438 411 GLVLIMTTFMHFFLPET 427 (463)
Q Consensus 411 ~~~~~~~~~~~~~~~~~ 427 (463)
.+..+..++..+..||+
T Consensus 153 ~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 153 LAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 44444444455556654
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=105.41 Aligned_cols=166 Identities=11% Similarity=0.069 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhHhhHHHHHH
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSALVAGGMGTVFAIVSMILADK-FGRKVLFLVGGIQMLVS 314 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~ 314 (463)
++......++...+++.+..+++.++ +++|.+..+.. ..............+++|+++|| +|||+.+..+..+..++
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~-~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig 101 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSI-TLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIG 101 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 34444455555567777778888887 56788777666 44444444445555789999999 59999999998888877
Q ss_pred HHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCccc--ccchhHHHHHHHHHHHHHHHh
Q 012438 315 QVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEI--RSAGQSITVAVNFLFTFLTAQ 392 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~ 392 (463)
..++.+. .+..+...+...+.+.+.+.. .+....+..|.+|++. +..+.++.+...++|..++|.
T Consensus 102 ~~l~~~~------------~~~~~~l~~~~~l~gig~g~~-~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~ 168 (500)
T PRK09584 102 YALVAWS------------GHDAGIVYMGMATIAVGNGLF-KANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSML 168 (500)
T ss_pred HHHHHHh------------cccHHHHHHHHHHHHHhhhcc-cCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHH
Confidence 6665542 011222333333444443332 3455566689888643 456788889999999999999
Q ss_pred hhhhhhhcccchhHHHHHHHHHHH
Q 012438 393 TFLPMLCHFKAGIFFFFGGLVLIM 416 (463)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~ 416 (463)
+.+.+.++.++...+...++..+.
T Consensus 169 i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 169 ATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHH
Confidence 999999988877655555543333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=111.78 Aligned_cols=150 Identities=15% Similarity=0.024 Sum_probs=105.0
Q ss_pred HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHH
Q 012438 264 TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVM 343 (463)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (463)
+.+.+..+.+ .+.....++..++.++.|++.||+|+|+.+..+.++..++.++..... ....+..++.
T Consensus 70 ~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~ 137 (465)
T TIGR00894 70 NFKWSGALQG-LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-----------GGGIALVVFC 137 (465)
T ss_pred CCCCCHHHhh-HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-----------HcCchHHHHH
Confidence 3455655655 788888899999999999999999999999888877776665543321 0112333444
Q ss_pred HHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc-cchhHHHHHHHHH-HHHHHHH
Q 012438 344 VCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF-KAGIFFFFGGLVL-IMTTFMH 421 (463)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 421 (463)
-.+.+.+.+.. .|....+.+|.+|++.|+++.|+.+....+|..+++.+.+.+.+.. ++...+.+.++.. +..++.+
T Consensus 138 r~~~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 138 RVIQGLAQGSV-SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred HHHHHHhcccc-hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 44444444433 4556667789999999999999999999999999999999998884 7665444444433 3333333
Q ss_pred HhcCC
Q 012438 422 FFLPE 426 (463)
Q Consensus 422 ~~~~~ 426 (463)
...++
T Consensus 217 ~~~~~ 221 (465)
T TIGR00894 217 VFPAD 221 (465)
T ss_pred HHhcC
Confidence 44443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-10 Score=106.88 Aligned_cols=152 Identities=17% Similarity=0.156 Sum_probs=133.7
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcch--hhhhHHHHHHHHHHHhhhh--------hhhHHHHHHHHH
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRK--VSILIGGVAFLAGSALGGS--------AFNIYMLIFGRL 92 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~--------~~~~~~l~~~r~ 92 (463)
++++|++..+...+.-+..+...+|++++|++.||+|.| ++++.+++++.+..+...+ .++-+.+.+.-+
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 457799999999999999999999999999999999999 8999988888666666555 578888999999
Q ss_pred HhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc
Q 012438 93 LLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF 172 (463)
Q Consensus 93 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 172 (463)
+.|+..|..++...++.+|..|+++.+..+|++....-....+||++-+.+.+..+ +-|+.+....++.++.+++.++
T Consensus 389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999888877664 5788888888887777777777
Q ss_pred CCCC
Q 012438 173 LPET 176 (463)
Q Consensus 173 ~~e~ 176 (463)
++++
T Consensus 467 v~~~ 470 (477)
T PF11700_consen 467 VDVE 470 (477)
T ss_pred ccch
Confidence 7544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-09 Score=99.23 Aligned_cols=152 Identities=9% Similarity=0.042 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHhhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHH
Q 012438 234 PQLVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQML 312 (463)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 312 (463)
++.++...+.+...+.....+....+.+.+ +++++..+.. .+.++..+...+..+..|++.||+|.|+.+.++..+..
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g-~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLF-LLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345555555555544444444444555544 6888888877 78888888888999999999999999999998888887
Q ss_pred HHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHh
Q 012438 313 VSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQ 392 (463)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 392 (463)
+..+...+... ...++.+..++...+.+.+ +..+ +.....+++.+|+++||++.|+....+++|..+++.
T Consensus 112 i~~~~~~~a~~--------~~~~s~~~lli~r~l~Gig-g~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 112 IPCVWLGIAVQ--------NPNTPFGIFIVIALLCGFA-GANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHHHHc--------ccCCCHHHHHHHHHHHHHH-HHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 77766554310 0012233444444444443 3333 445556689999999999999997777777766655
Q ss_pred hhhh
Q 012438 393 TFLP 396 (463)
Q Consensus 393 ~~~~ 396 (463)
+.+.
T Consensus 182 l~p~ 185 (462)
T PRK15034 182 VAPL 185 (462)
T ss_pred HHHH
Confidence 5544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=107.31 Aligned_cols=139 Identities=18% Similarity=0.088 Sum_probs=108.7
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHH--Hhhhh--hhhHHHHHHHHHHhhcccc
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGS--ALGGS--AFNIYMLIFGRLLLGVGIG 99 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~--~~~~~--~~~~~~l~~~r~l~G~~~~ 99 (463)
+++|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+.+..++.|++.+
T Consensus 248 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 327 (394)
T TIGR00883 248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGG 327 (394)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 4557788899999999999999999999999999999998776555444333 12222 2466777788899999888
Q ss_pred cccchhhHHhhhcCCCCcccchhhh-hhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHH
Q 012438 100 FGNQSVPLYLSEMAPPKYRGTFNIG-FQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPAS 164 (463)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~ 164 (463)
...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+.+..+ +|++.++...+..+
T Consensus 328 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~~~~~~~~~~l 391 (394)
T TIGR00883 328 MYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG--DWYAIGYYLAALAL 391 (394)
T ss_pred HHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC--cchhHHHHHHHHHH
Confidence 8999999999999999999999998 456677888899999887766532 38877766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.8e-10 Score=98.16 Aligned_cols=145 Identities=18% Similarity=0.036 Sum_probs=102.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHH-HHHHh
Q 012438 270 STSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVM-VCLYS 348 (463)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 348 (463)
...++.+.+.+++..++.+...|.++||+|||.++..|.+..++...+.+.. .+. ..++. -.+.+
T Consensus 67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-------------~~F-~afv~aR~l~G 132 (451)
T KOG2615|consen 67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-------------RNF-AAFVLARFLGG 132 (451)
T ss_pred chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-------------HHH-HHHHHHHHhhh
Confidence 3445588899999999999999999999999999999998888876666553 222 22222 22222
Q ss_pred hhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhh---cccchhHHHHHHHH---HHH-HHHHH
Q 012438 349 SGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLC---HFKAGIFFFFGGLV---LIM-TTFMH 421 (463)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~-~~~~~ 421 (463)
. .=+...+..++++|+++++.|+.+++..+....+|.++||.++|++.. ..+...+..-+.+. ... .....
T Consensus 133 i--~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~ 210 (451)
T KOG2615|consen 133 I--FKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFP 210 (451)
T ss_pred h--ccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHH
Confidence 2 223345677888999999999999999999999999999999999887 34433332212111 112 23445
Q ss_pred HhcCCCCCC
Q 012438 422 FFLPETKNV 430 (463)
Q Consensus 422 ~~~~~~~~~ 430 (463)
+++|||-..
T Consensus 211 ~~lpETL~~ 219 (451)
T KOG2615|consen 211 WFLPETLPL 219 (451)
T ss_pred HhCCccccc
Confidence 678887443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=97.00 Aligned_cols=178 Identities=12% Similarity=0.063 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHH
Q 012438 235 QLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVS 314 (463)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 314 (463)
+.++...+.+...++..+.+....+.+-+++++++.+.. ++..+..+.+.+.++..|.+.||+|.|++..++.+++.+-
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~-ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP 92 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKG-LLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIP 92 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHH-HHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHH
Confidence 334444444444444444555555556688999999998 8999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhh
Q 012438 315 QVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTF 394 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 394 (463)
.+.+.+.. ..++.+..+.+..+.+.+ .+...+....+++.+|++++|.++|+.. .+++|..+...+.
T Consensus 93 ~~~~~~a~----------~~~~~~~ll~~gll~G~~--GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~ 159 (417)
T COG2223 93 CLGLAFAV----------TYPSTWQLLVIGLLLGLA--GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVA 159 (417)
T ss_pred HHHHHHHc----------cCCchHHHHHHHHHHhcc--cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHH
Confidence 87777652 112123333333333332 2223455566689999999999999999 9999999999998
Q ss_pred hhhhhccc---ch-hHHHHHHHHHHHHHHHHHhcCC
Q 012438 395 LPMLCHFK---AG-IFFFFGGLVLIMTTFMHFFLPE 426 (463)
Q Consensus 395 ~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~ 426 (463)
+.+....+ +. ...++....++..++.++...+
T Consensus 160 P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 160 PLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88888877 43 3444444444545555555543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-09 Score=99.81 Aligned_cols=139 Identities=14% Similarity=-0.045 Sum_probs=109.4
Q ss_pred hHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCC
Q 012438 252 NIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGG 331 (463)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (463)
.......|.+.++++.+..+.+ ...+...++..++.+..|++.||+|||+++..+..+.+++.+...+.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a---------- 94 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAA-LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY---------- 94 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC----------
Confidence 4456778888999999988877 88888889999999999999999999999999999999998888764
Q ss_pred CcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc-cchhH
Q 012438 332 FSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF-KAGIF 406 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~ 406 (463)
++.+..+..-.+.+.+.+... +....+..+.+| ++|+.++++.......|..+++.+.+.+.++. +|...
T Consensus 95 ---~~~~~ll~~r~l~Gig~~~~~-~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~ 165 (393)
T PRK09705 95 ---PQSALLLSSALLGGVGIGIIQ-AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT 165 (393)
T ss_pred ---cchHHHHHHHHHHHhHHHHHh-hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 334444455555555555433 344456678887 78999999999999999999999998888775 45443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-10 Score=99.61 Aligned_cols=152 Identities=19% Similarity=0.158 Sum_probs=134.4
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGN 102 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 102 (463)
++++|++..+...+.-...+..++|++++|++.||+|.|+++..+++++.+.++...+...-..+.+.-.+.|+..|+.+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 34779999999999999999999999999999999999999999999999999888888777777778889999999999
Q ss_pred chhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCC
Q 012438 103 QSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPET 176 (463)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~ 176 (463)
..+.++.++..|+++-++.+|+++...-.+..+||.+-+.+.+..+ +-|..+....++.++.++..+++|+.
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999999999999999999999888877765 46777777777666666666667654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.8e-09 Score=96.50 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=127.1
Q ss_pred hHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCC
Q 012438 252 NIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGG 331 (463)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (463)
....+-.|.+.+++|++..+..+.+......+..+..+.+|+++||+|.|+.+..+.+...+..++.++.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---------- 112 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---------- 112 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----------
Confidence 3455667788889999999834488999999999999999999999999999999998888888887765
Q ss_pred CcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchh---HHH
Q 012438 332 FSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGI---FFF 408 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~ 408 (463)
.......+.-++++.+-+..+ ....++.+.+|++.|+++.|+.+....+|.++++++.+. ....++.. ...
T Consensus 113 ---~Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~ 186 (511)
T TIGR00806 113 ---TSVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNI 186 (511)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHH
Confidence 345566666677777766665 455666799999999999999999999999999999998 55566443 334
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 012438 409 FGGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~ 429 (463)
+.....++++++.+++|..++
T Consensus 187 Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 187 ISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCch
Confidence 455556667777788885443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=103.15 Aligned_cols=167 Identities=13% Similarity=0.164 Sum_probs=118.0
Q ss_pred hhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCC
Q 012438 250 GINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDH 329 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (463)
+......-.+.++.+...++...+ .+.....+-.++.++++|.++||++||++++.+-++.++....+.+....
T Consensus 25 G~~~~~va~~wlv~~lt~S~~~va-lv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~----- 98 (524)
T PF05977_consen 25 GDWMQTVALAWLVTQLTGSPLMVA-LVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFF----- 98 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 334444444555556555655555 77777788888999999999999999999999888877666555544221
Q ss_pred CCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHH
Q 012438 330 GGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFF 409 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 409 (463)
...+.+..++..++.+.+... ..|...+++.|++|+++...++++.+...++...+||.+.|.+....|....+.+
T Consensus 99 ---~~~~~~~Ll~~~fl~g~~~a~-~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 99 ---GLLSPWLLLILTFLLGIGSAF-FNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred ---CcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 112344444444444444433 3567777778999999999999999999999999999999999998886666666
Q ss_pred HHHHHHHHHHHHHhcCC
Q 012438 410 GGLVLIMTTFMHFFLPE 426 (463)
Q Consensus 410 ~~~~~~~~~~~~~~~~~ 426 (463)
-+++.+..++.....++
T Consensus 175 nalsfl~~i~~l~~~~~ 191 (524)
T PF05977_consen 175 NALSFLISILALLRWKP 191 (524)
T ss_pred HHHHHHHHHHHHHHccc
Confidence 66666655555444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.1e-09 Score=99.17 Aligned_cols=145 Identities=14% Similarity=0.042 Sum_probs=107.5
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHH
Q 012438 242 IPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSI 321 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (463)
..++.............|.+.++.+.+..+.+ ...+...++..++++..|++.||+|||+.+..+..+.+++.+++...
T Consensus 10 ~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g-~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~ 88 (410)
T TIGR00885 10 SLFALWGFANDITNPMVPQFQQAFTLTAFQAA-LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPA 88 (410)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 33444434445555777888888999888877 88899999999999999999999999999999999888887665432
Q ss_pred HHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhh
Q 012438 322 MAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPML 398 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 398 (463)
. ..++.+..+....+.+.+.+... +....+..+..|+++|++..++.+....+|..++|.+.+.+.
T Consensus 89 ~----------~~~~~~~~l~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 89 A----------EIMNYTLFLVGLFILTAGLGFLE-TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred H----------hhccHHHHHHHHHHHHhhHHHHH-hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01223444444555555554443 233445568889899999999999999999999999988775
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.1e-09 Score=100.42 Aligned_cols=164 Identities=16% Similarity=0.059 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHH-----HHHHHHHHHHHHHHHhhcCCchhhhHhhHH
Q 012438 236 LVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVA-----GGMGTVFAIVSMILADKFGRKVLFLVGGIQ 310 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 310 (463)
......+..+....-...+....|.+.++++.++.+......+.. .+...++.++.|++.||+|||+.+..+..+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 344555566666666677888889998998877665442322211 222346788999999999999999999888
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCcchh------HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHH
Q 012438 311 MLVSQVMIGSIMAAQLGDHGGFSEGY------AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF 384 (463)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 384 (463)
..++.++..+.. +.. ....++.-.+.+.+.+..+ +....+++|.+|++.|++++++.....+
T Consensus 96 ~~~~~~l~~~~~-----------~~~~~~~~~~~~l~~~R~l~G~~~g~~~-~~~~~~~~e~~p~~~rg~~~~~~~~~~~ 163 (434)
T PRK15075 96 MASGTLLIAFVP-----------GYATIGLAAPLLVLLGRLLQGFSAGVEL-GGVSVYLAEIATPGRKGFYTSWQSASQQ 163 (434)
T ss_pred HHHHHHHHHhCC-----------cHHHHHHHHHHHHHHHHHHhhccccccH-HHHHHHHHhhCCcccchHHHHHHHHHHH
Confidence 888777766531 010 0122333344444443332 3344677899999999999999998888
Q ss_pred HHHHHHHhhhhhhh--------hcccchhHHHHHH
Q 012438 385 LFTFLTAQTFLPML--------CHFKAGIFFFFGG 411 (463)
Q Consensus 385 ~g~~~~~~~~~~~~--------~~~~~~~~~~~~~ 411 (463)
++..+++.+.+.+. +..+|...+.+..
T Consensus 164 ~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 164 VAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 88777776665542 3556665555433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=92.74 Aligned_cols=154 Identities=18% Similarity=0.150 Sum_probs=119.4
Q ss_pred CCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh-------hhHHHHHHHH
Q 012438 19 DTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA-------FNIYMLIFGR 91 (463)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-------~~~~~l~~~r 91 (463)
.+++++.+|+|.+|.+.+.+.-.+|..+| ++.|.+.||+|++.++.+|.+...+|..+...+ .++|.+.+..
T Consensus 25 S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~ 103 (250)
T PF06813_consen 25 SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFL 103 (250)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHH
Confidence 45668889999999999999999999875 889999999999999999999999998877654 4678898888
Q ss_pred HHhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhh
Q 012438 92 LLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAI 171 (463)
Q Consensus 92 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~ 171 (463)
++.|.+.+.....+.....+.+| ++||.+.++.-...+++..+-..+...+..- ..-+..+.+...+.++.++..+
T Consensus 104 ~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~---~~~~fll~la~~~~~v~l~~~~ 179 (250)
T PF06813_consen 104 FLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD---DPSSFLLFLAVLPAVVCLVAMF 179 (250)
T ss_pred HHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHhh
Confidence 99988877776777777778887 6899999999999999887776664333322 2345555555555555555555
Q ss_pred cCCCCh
Q 012438 172 FLPETP 177 (463)
Q Consensus 172 ~~~e~~ 177 (463)
++++.|
T Consensus 180 ~vr~~~ 185 (250)
T PF06813_consen 180 FVRPVP 185 (250)
T ss_pred heeccC
Confidence 554443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.7e-09 Score=98.11 Aligned_cols=177 Identities=12% Similarity=-0.009 Sum_probs=106.0
Q ss_pred HHHhhhhhhHHHhhHHHHHHHcC---CCCchh--HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHH
Q 012438 244 FFQQVTGINIVGLYSPVLFRTLK---LGESTS--LLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMI 318 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 318 (463)
.+....-...+....|.+.++.+ .+..+. .+.......++..+++++.|+++||+|||+.+..+..+..++.+..
T Consensus 31 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~ 110 (432)
T PRK10406 31 NLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVI 110 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 44444445555666677767764 222221 1133344555666999999999999999999999998888887776
Q ss_pred HHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhh
Q 012438 319 GSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPML 398 (463)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 398 (463)
.+.... ...........++.-.+.+.+.+.. .+....+++|.+|+++|+...++.......|..+++.+...+.
T Consensus 111 ~~~~~~-----~~~~~~~~~~l~~~R~l~G~g~g~~-~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 111 ACLPGY-----ETIGTWAPALLLLARLFQGLSVGGE-YGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred hhcCCc-----hhHHHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553100 0000011123334444445444433 4566677799999999999999887777777777766544332
Q ss_pred --------hcccchhHHHHHHHHHHHHHHHHHhcCC
Q 012438 399 --------CHFKAGIFFFFGGLVLIMTTFMHFFLPE 426 (463)
Q Consensus 399 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (463)
+..+|...+...++..+...+.....+|
T Consensus 185 ~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e 220 (432)
T PRK10406 185 QTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDE 220 (432)
T ss_pred HhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2456776665555544443333333343
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-09 Score=96.26 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=112.4
Q ss_pred hhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCC
Q 012438 250 GINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDH 329 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (463)
+...+.+++=-.+++.+..+...+ ......-.+.++.-++.+++.+|+|+-+++..+..+..+-.+.+..+
T Consensus 386 g~~lv~tFLfWHled~~~~~~LfG-v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-------- 456 (618)
T KOG3762|consen 386 GVGLVFTFLFWHLEDLGGIKTLFG-VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-------- 456 (618)
T ss_pred HHHHHHHHHHHHHhhcCCcceeee-ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--------
Confidence 344444455445677776666555 77777888889999999999999999999999888887777766665
Q ss_pred CCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHH-HHHHHHHHHhhhhhhhhcccchh-HH
Q 012438 330 GGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAV-NFLFTFLTAQTFLPMLCHFKAGI-FF 407 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~-~~ 407 (463)
.++|..+..=.+-+...+..|..+ .+|++...||+.++++.++.... ..+|-.+|..++|.+.+.++..+ +.
T Consensus 457 -----~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~ 530 (618)
T KOG3762|consen 457 -----QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFR 530 (618)
T ss_pred -----cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHH
Confidence 456666666666677776666544 46668999999999999998776 45888888888999998888544 44
Q ss_pred HHHHHHHHHH
Q 012438 408 FFGGLVLIMT 417 (463)
Q Consensus 408 ~~~~~~~~~~ 417 (463)
++++.+++..
T Consensus 531 ~~giAcl~~l 540 (618)
T KOG3762|consen 531 IFGIACLVTL 540 (618)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=106.89 Aligned_cols=154 Identities=18% Similarity=0.098 Sum_probs=108.2
Q ss_pred hHHHHHHHcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCc
Q 012438 257 YSPVLFRTLKLG---ESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFS 333 (463)
Q Consensus 257 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (463)
+.|.+.++.+.+ ..... ...+...++.+++.++.|+++||+|||+.+.++.++..++.+...+.
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~-~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------------ 177 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVD-LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------------ 177 (505)
T ss_pred ccccEEEEecceechHHHHH-HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------------
Confidence 445556667776 45555 88888999999999999999999999999998888877776665543
Q ss_pred chhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHH
Q 012438 334 EGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLV 413 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (463)
++.+..++...+.+.+.+. ..+....++.|.+|++.|+.+.++......+|..+++.+...+.+ |...+...++.
T Consensus 178 -~~~~~~~~~r~l~G~~~~~-~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~ 252 (505)
T TIGR00898 178 -PNYTVFLVFRLLVGMGIGG-IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLP 252 (505)
T ss_pred -ccHHHHHHHHHHHHhhccc-hHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHH
Confidence 2344444444554444433 245666777899999999999999988888898888877655543 44444444444
Q ss_pred HHHHHHHHHhcCCCC
Q 012438 414 LIMTTFMHFFLPETK 428 (463)
Q Consensus 414 ~~~~~~~~~~~~~~~ 428 (463)
.+...+..+++||+.
T Consensus 253 ~~~~~~~~~~~~esp 267 (505)
T TIGR00898 253 TFLFFLLSWFVPESP 267 (505)
T ss_pred HHHHHHHHHhcCCCh
Confidence 444444556677753
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=84.14 Aligned_cols=133 Identities=20% Similarity=0.218 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccce
Q 012438 279 VAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPL 358 (463)
Q Consensus 279 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (463)
...++.+++.++.+++.||+|||+.+..+.....++.+..... ++.+.......+.+.+.+.. .+.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~ 71 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAFA-LVA 71 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHH-HHh
Confidence 3456778899999999999999999888877777666555432 22333334444444443322 345
Q ss_pred ecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhH-HHHHHHHHHHHHHHHHhcC
Q 012438 359 AWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIF-FFFGGLVLIMTTFMHFFLP 425 (463)
Q Consensus 359 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 425 (463)
...+..|.+|++.|+++.++.+....++..+++.+.+.+.+..++... .+......+..+...+..|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 566678999999999999999999999999999999999888776444 4444444444444444444
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.6e-09 Score=90.21 Aligned_cols=343 Identities=11% Similarity=0.052 Sum_probs=209.8
Q ss_pred ccCchhHH-HHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchh
Q 012438 27 KFDSQLLT-TFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSV 105 (463)
Q Consensus 27 ~~s~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 105 (463)
|++..|+. -+.-...-.+.+.-.+.=.+.|..-.|+++++-.+.......+..+.++.+.+=+.-++.|...+. ..+-
T Consensus 37 NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAY 115 (433)
T KOG3810|consen 37 NLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAY 115 (433)
T ss_pred CccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHhh
Confidence 45554443 333444556666777777899999899999998888888889999999999999999999986654 4678
Q ss_pred hHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCCChHHHHhhCC
Q 012438 106 PLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSIIQRSN 185 (463)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 185 (463)
++++-+..+|+++.++.+...+..-.|...|..++-.+..... .+.+..-.+......+.....+++|..++...-+.+
T Consensus 116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~-~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~ 194 (433)
T KOG3810|consen 116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET-LSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRL 194 (433)
T ss_pred hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc-cchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcc
Confidence 8899999999999999999998888888888877765544322 345555555555555566666778877755544433
Q ss_pred cHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHHc
Q 012438 186 DHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRTL 265 (463)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (463)
+++......++...+.+..+..+ .....+.+-++...+++.+....+......++++-...|...+.++.
T Consensus 195 ~~~~~v~~~e~~~~~~~~~~~l~----------~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~ 264 (433)
T KOG3810|consen 195 EDKISVGDLEEMNPQASYMSYLR----------GAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEV 264 (433)
T ss_pred cccceeccchhcCccchhhHHHH----------HHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhh
Confidence 22111111111111000000000 00001111111223333444445555666677788888888877776
Q ss_pred C-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHH
Q 012438 266 K-LGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMV 344 (463)
Q Consensus 266 ~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
. .+.....|..-.+..+.+.++.+..|.+--++.|..-+.++......+.+++... .....|+..+..
T Consensus 265 ~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-----------~t~~Iw~~Ya~y 333 (433)
T KOG3810|consen 265 APNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-----------QTQHIWVCYAGY 333 (433)
T ss_pred CCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-----------cccceehhhhhH
Confidence 3 2333333455566677788888888988776666544333333222222222221 235577777777
Q ss_pred HHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhh
Q 012438 345 CLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQT 393 (463)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 393 (463)
.++...+..........+ ++....+.-|..+|+..++.-+-..+...+
T Consensus 334 vlfr~~y~l~itiA~~~i-A~nL~~e~~gLvFGiNTFvAl~lQsilT~i 381 (433)
T KOG3810|consen 334 VLFRVIYQLTITIATFQI-ARNLSSELFGLVFGINTFVALILQSILTLI 381 (433)
T ss_pred HHHHhhHhhhhhHHHHHH-HHhhhhhhheeeeehHHHHHHHHHHhheEE
Confidence 777777665543333333 455566888999999888776666555543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-09 Score=104.65 Aligned_cols=156 Identities=14% Similarity=-0.034 Sum_probs=110.9
Q ss_pred HHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHH
Q 012438 243 PFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIM 322 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 322 (463)
..+...........-.+.+-++++.++.+.+ .+.+...++..++.++.+++.||.+||+.+.++.++.+++.++..+.-
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G-~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSG-LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcce-eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence 3343333334444556677778898888877 888899999999999999999999999999999999999888876542
Q ss_pred HhhhCCC---------------------C---C----------C-cc--h-hHHHHHHHHHHHhhhhhccccceeccccc
Q 012438 323 AAQLGDH---------------------G---G----------F-SE--G-YAYLILVMVCLYSSGYCYSWGPLAWLVPS 364 (463)
Q Consensus 323 ~~~~~~~---------------------~---~----------~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (463)
+..-... . + . .. . .....++.-++.+.+.+. ..++...++.
T Consensus 120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~-~~~~~~~~i~ 198 (633)
T TIGR00805 120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP-IFPLGISYID 198 (633)
T ss_pred HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc-chhcCchhhh
Confidence 2110000 0 0 0 00 1 122333444444544433 3466778889
Q ss_pred ccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhc
Q 012438 365 EIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCH 400 (463)
Q Consensus 365 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 400 (463)
|.+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999887754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-09 Score=100.34 Aligned_cols=140 Identities=12% Similarity=-0.003 Sum_probs=116.9
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccch
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 104 (463)
|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+.
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 313 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLA 313 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45889899999999999999999999999999999999999999999998888888999999999999999999988888
Q ss_pred hhHHhhhcCCCCcccchhhhhh-HHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHH
Q 012438 105 VPLYLSEMAPPKYRGTFNIGFQ-LCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIG 169 (463)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 169 (463)
...++.+. +++++++..+... ...++|..+|+.+++.+.+.. |+ ..++..++..++.++.
T Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 314 AMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---GA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHHH
Confidence 88888887 5667788888876 556788899999988887653 45 4566666655554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.5e-09 Score=97.26 Aligned_cols=171 Identities=14% Similarity=0.126 Sum_probs=115.5
Q ss_pred HHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCch-hhhHhhHHHHHHHHH
Q 012438 244 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKF-----GRKV-LFLVGGIQMLVSQVM 317 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~~ 317 (463)
++.+.........-+|.++++.|.+..+.+ .+...... .+..++.|+++||+ |||| .+..+....+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig-~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQTIG-FFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 344445666777888999999999998887 55444433 68889999999999 7765 577666666666665
Q ss_pred HHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhh
Q 012438 318 IGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPM 397 (463)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 397 (463)
+.+.. +..+.+.......+.. .......+...+++.|..|+++|+++.++......+|..+++.+.+.+
T Consensus 85 l~~~~----------~~~~~~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l 153 (402)
T PRK11902 85 MAFCP----------PHAALWPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL 153 (402)
T ss_pred HHhcC----------ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 54420 1122333333333333 233334556677778999999999999999999999999999998888
Q ss_pred hhc-ccchhHHHHHHHHHHHHHHHHHhcCCCC
Q 012438 398 LCH-FKAGIFFFFGGLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 398 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (463)
.+. .+|...+.+.++..+...+..+..+|++
T Consensus 154 ~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 154 ADRVLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 885 3666655554444444444445566543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=109.21 Aligned_cols=146 Identities=13% Similarity=0.067 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhh
Q 012438 271 TSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSG 350 (463)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (463)
...++......+..++.++++|+++||++||+++........+.......... ..+.+..++..++.+.+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~l~~~~~l~gi~ 121 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH----------LNSVPLLFAALFLMGIH 121 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHH
Confidence 33436666777888999999999999999999764432222222221111110 02344555555555554
Q ss_pred hhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCC
Q 012438 351 YCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFFLPET 427 (463)
Q Consensus 351 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (463)
.+. ..|...+++.+.+|++.++.++|+.++...+|..++|.+.|.+.+..++...++..++..+.++++.+.++++
T Consensus 122 ~a~-~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 122 SAL-FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HHh-hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 443 3567777778999999999999999999999999999999999998887766655555555555555666654
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.3e-08 Score=94.60 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=119.1
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hcchhhhhHHHHHHHHHHHhhhhhhh--------HHHHHHHHHHhh
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRA-LGRKVSILIGGVAFLAGSALGGSAFN--------IYMLIFGRLLLG 95 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~--------~~~l~~~r~l~G 95 (463)
.+|++......+...+....-+..+++|+++|+ +||++.+.++.++..+|.++.+++.. ....+++-.+..
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia 96 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIA 96 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHH
Confidence 457788888888888888888999999999996 89999999999999999888776421 234667788888
Q ss_pred cccccccchhhHHhhhcCCCCc---ccchhhhhhHHHHHHHHHHHHhhhhhcccC----CcchhHHHHHhhHHHHHHHHH
Q 012438 96 VGIGFGNQSVPLYLSEMAPPKY---RGTFNIGFQLCGAIGVLSANLLNYGTQKIK----GGWGWRISLAMAAAPASILTI 168 (463)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~gwr~~f~~~~~~~~~~~~ 168 (463)
+|.|+.-|...+...|-+++++ |.....++..+.++|.++++.+...+.... ...+|...|.+.++..++..+
T Consensus 97 ~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~l 176 (654)
T TIGR00926 97 LGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALI 176 (654)
T ss_pred hhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999998643 556888889999999999988876665321 224699999998888877666
Q ss_pred Hhhc
Q 012438 169 GAIF 172 (463)
Q Consensus 169 ~~~~ 172 (463)
....
T Consensus 177 vf~~ 180 (654)
T TIGR00926 177 VFMA 180 (654)
T ss_pred HHHH
Confidence 5543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.5e-09 Score=98.37 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=117.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhh
Q 012438 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVP 106 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 106 (463)
+.+..+.|.+.+...+...++.++.|++.||+|||+.+.++.++.+++..+...+++.+.+++.+++.|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788899999999999999999999999999999999999999888878888999999999999998766666666
Q ss_pred HHhhhcCCCCcccchhhh-hhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh
Q 012438 107 LYLSEMAPPKYRGTFNIG-FQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA 170 (463)
Q Consensus 107 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~ 170 (463)
.++.+..+++.++...+. .+....+|..+++.+++.+.+. .||+..|.+.++..++..+..
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~---~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS---IGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh---cccHHHHHHHHHHHHHHHHHH
Confidence 677777887777776665 6778899999999998887764 379999999888877665544
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.98 E-value=7e-08 Score=87.68 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHHhhhc
Q 012438 33 LTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEM 112 (463)
Q Consensus 33 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 112 (463)
.+.+.-+-.+...+.-+.+.++.+|+..+.-...+.+++.++.++.+++++.+.=+++-.+.+++.|........+.. .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 344555555666777777888899988777777788889999999999999999999999999999999888887644 5
Q ss_pred CCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCC
Q 012438 113 APPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPE 175 (463)
Q Consensus 113 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e 175 (463)
+++ ...+.+..|.+.+.++|+..-..+.. .+ .+-|..+++..++.++..+..++ +|.
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g-~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LG-LSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHH-hC-cCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 653 45788889999999998877655655 22 34577777777766655555554 543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.1e-09 Score=99.58 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=99.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh-hhHHHHHHHHHHhhcccccccchhhH
Q 012438 29 DSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA-FNIYMLIFGRLLLGVGIGFGNQSVPL 107 (463)
Q Consensus 29 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 107 (463)
+..+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888899999999999999999999999999998888887777665 46677778888999999999999999
Q ss_pred HhhhcCC-------CCcccchhhhhhHHHHHHHHHHHHhhhhhcc
Q 012438 108 YLSEMAP-------PKYRGTFNIGFQLCGAIGVLSANLLNYGTQK 145 (463)
Q Consensus 108 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~ 145 (463)
+++|..+ ++++|...++.+....+|..+++.+.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 4567889999999999999999988777654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-07 Score=85.10 Aligned_cols=344 Identities=14% Similarity=0.024 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh--------h-------hHHHHHHHHHHhhccc
Q 012438 34 TTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA--------F-------NIYMLIFGRLLLGVGI 98 (463)
Q Consensus 34 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--------~-------~~~~l~~~r~l~G~~~ 98 (463)
+...-.-.+...+.++..|.+.||..|.++...+.+..-++..+++.. + -.+.+++.-.+.|.-.
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 333334456677788899999999999999888776665444333221 1 1122222222222211
Q ss_pred c-cccchhhHHhhhcCC------CCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhh
Q 012438 99 G-FGNQSVPLYLSEMAP------PKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAI 171 (463)
Q Consensus 99 ~-~~~~~~~~~i~~~~~------~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~ 171 (463)
- .......+.=.||.. ++.+.+.++...-.=.+.-+++|++.+.+... .+.+....+.+...++..+.=+
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~---~s~~~~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTF---ASPVIAAIFIAGWNLASVFVEY 197 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCHHHHHHHHHHHHHHHHHHHH
Confidence 1 111112222235532 33344556666656667788888887766553 3577777776666666544322
Q ss_pred c-----CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHH
Q 012438 172 F-----LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQ 246 (463)
Q Consensus 172 ~-----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (463)
+ ....|. +..++++.++....... + ..+.........+..+.-++....++..++. +.+...+...+.
T Consensus 198 ~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q----~vflas~alalL 270 (432)
T PF06963_consen 198 FLLARVYNSVPA-LAVKKRSSESESSSDEE-S-SSESSSDPSILKRLWNPLRTIIRGWRTYFRQ----PVFLASFALALL 270 (432)
T ss_pred HHHHHHHHhChH-hcCCCCCcccccccccc-c-cccccchhhHHHHHHHHHHHHhccHHHHHhC----HHHHHHHHHHHH
Confidence 2 122232 22222111110000000 0 0000000000000001111112334443333 233322222222
Q ss_pred hhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhh
Q 012438 247 QVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQL 326 (463)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (463)
++. .-.+...+..|+...|+++...+ ..-....+.++.++++..++.+|+|..+.-.++......++.+........
T Consensus 271 Y~T-VLsf~~lmt~yl~~~G~s~~~ig-i~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~- 347 (432)
T PF06963_consen 271 YFT-VLSFGGLMTAYLKSQGYSPSVIG-IFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAP- 347 (432)
T ss_pred HHH-HhcCcHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcC-
Confidence 222 22234455667777899988877 788888999999999999999999998888877776666555444332211
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhh
Q 012438 327 GDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQT 393 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 393 (463)
.. +.+.......+..+.+.-.|. .++-....-+..|..|+++||+..|.-+...++...+.-.+
T Consensus 348 -~~-~~~~~s~~~l~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 348 -GS-PFSSISAYLLLGGIALSRIGL-WSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred -CC-CchhhHHHHHHHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 00 001122233333333332222 12223334455899999999999999999998877666544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.4e-09 Score=99.70 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=107.9
Q ss_pred hhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCC
Q 012438 250 GINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDH 329 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (463)
..+.+..+.+.+.++++.+..+.+ .+....... ....+..|++.||+|+|+++.++.++..++.++.++.....
T Consensus 42 ~~y~fsv~s~~L~~~lgls~~~l~-~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~---- 115 (591)
T PTZ00207 42 FMYAFNLISGAMQARYNLTQRDLS-TITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV---- 115 (591)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHH-HHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 345677888888889999888776 444443333 34566789999999999999999999999888776642100
Q ss_pred CCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHH
Q 012438 330 GGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFF 409 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 409 (463)
-..+.+...+..++.+.+.+..... ....+.+.+| +.||.+.|+......+|+.+.+.+...+........+++.
T Consensus 116 ---i~~s~~~l~l~r~l~G~G~~~~~~~-~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l 190 (591)
T PTZ00207 116 ---IEGSVVRLSVYNGLMTLGCMLFDLG-AVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFL 190 (591)
T ss_pred ---ccCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 0022344444444444443322222 2333467887 7899999999999999998766665555443223445555
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 012438 410 GGLVLIMTTFMHFFLPET 427 (463)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~ 427 (463)
+.+..+.+++...+++..
T Consensus 191 ~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 191 MSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHhheeCC
Confidence 556566666666665544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-08 Score=95.21 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=111.1
Q ss_pred HHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCchh-hhHhhHHHHHHHHH
Q 012438 244 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKF-----GRKVL-FLVGGIQMLVSQVM 317 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~-~~~~~~~~~~~~~~ 317 (463)
.+.............|.++++.+.+..+.+ .... .... .++.++.+.++||+ |||+. +..+.+...++...
T Consensus 21 ~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig-~~~~-~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~ 97 (491)
T PRK11010 21 GFASGLPLALTSGTLQAWMTVENIDLKTIG-FFSL-VGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAA 97 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHH-HHHH-HHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHH
Confidence 334444555666778889998888877766 3322 2222 36889999999999 98885 55665555555555
Q ss_pred HHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhh
Q 012438 318 IGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPM 397 (463)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 397 (463)
+.+.. +..+.+.......+.+.+.+ ...+...++..|.+|+++|+.+.++......+|..+++.+.+.+
T Consensus 98 ~a~~~----------~~~~l~~l~~~~~l~~~~~a-~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l 166 (491)
T PRK11010 98 MGFLE----------PGTQLRWLAALAVVIAFCSA-SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWL 166 (491)
T ss_pred HHHcC----------CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54430 11223333333333333333 33445567778999999999999999999999999999999998
Q ss_pred hh-cccchhHHHHHHHHHHHHHHHHHhcCCCC
Q 012438 398 LC-HFKAGIFFFFGGLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 398 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (463)
.+ ..+|...+...++..++..+..+..||++
T Consensus 167 ~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 167 ADRYLGWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88 45776666555554444454444566653
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-08 Score=92.70 Aligned_cols=146 Identities=13% Similarity=0.010 Sum_probs=106.1
Q ss_pred HHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHH
Q 012438 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGS 320 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 320 (463)
.+.++.............|.+.++++.+..+.+ .......++..++.++.|++.||+|||+.+..+..+..++.+++..
T Consensus 32 ~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~g-l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~ 110 (438)
T PRK10133 32 CSLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWP 110 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 333444444556677788988888999887777 8888999999999999999999999999999999988888766532
Q ss_pred HHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhh
Q 012438 321 IMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPML 398 (463)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 398 (463)
.. ..++.+..+....+.+.+.+... +....++.|..|++.|...+++.+....+|..+++.+.+.+.
T Consensus 111 ~~----------~a~~~~~ll~~r~l~G~g~g~~~-~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 111 AA----------EIMNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HH----------hcCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 01234445555555565555443 333444467767666666789999999999999998876554
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.8e-09 Score=96.34 Aligned_cols=144 Identities=20% Similarity=0.181 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhcc
Q 012438 275 LSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYS 354 (463)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (463)
...+...+++++|+++.++++||+|||..+.++.++..++.++....... +.....+..-.+.+...+..
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~----------~~~e~li~GR~i~Gl~~gl~ 133 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA----------PSFEMLILGRLIVGLACGLS 133 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHhHHH
Confidence 45677788999999999999999999999998888888887777665322 33445555555555555444
Q ss_pred ccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhh-hhhhcc-cchhHHHHHHHHHHHHHHHHHhcCCCCC
Q 012438 355 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFL-PMLCHF-KAGIFFFFGGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 355 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (463)
.. ....+.+|..|++.||....+......+|..++..+.. .+..+. .|...+.+..+..+...+...++||..+
T Consensus 134 ~~-~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 134 TG-LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HH-HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 33 34456689999999999999999888888888854442 333232 2555566666666777777788898754
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=92.93 Aligned_cols=161 Identities=17% Similarity=0.144 Sum_probs=103.2
Q ss_pred HHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCchhh-hHhhHHHHHHHHHHHHHHHhhh
Q 012438 253 IVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKF-----GRKVLF-LVGGIQMLVSQVMIGSIMAAQL 326 (463)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 326 (463)
....-.|.+.++.|.+..+.+ ..... .+...+ .++.|.++||+ ||||.+ ..+.+...++...+.+..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g-~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIG-FFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHH-HHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----
Confidence 344567888999999988777 44433 333333 88999999997 788864 455555555444443320
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc----
Q 012438 327 GDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK---- 402 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~---- 402 (463)
+....+.......+.+.+ .....+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+
T Consensus 79 ------~~~~l~~l~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~ 151 (356)
T TIGR00901 79 ------PSTDLPLLAGLAFLIAFF-SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTG 151 (356)
T ss_pred ------cchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 112222222222222222 222245556667899999999999999999999999999999998888777
Q ss_pred ----chhHHHHHHHHHHHHHHHHHh-cCCC
Q 012438 403 ----AGIFFFFGGLVLIMTTFMHFF-LPET 427 (463)
Q Consensus 403 ----~~~~~~~~~~~~~~~~~~~~~-~~~~ 427 (463)
|...+...++..+...+..++ .||+
T Consensus 152 ~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 152 LITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 666666666555555544443 4554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.6e-09 Score=112.21 Aligned_cols=141 Identities=15% Similarity=0.053 Sum_probs=120.2
Q ss_pred CCccccCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 012438 23 GNYCKFDSQ-LLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 23 ~~~~~~s~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 101 (463)
.+++|++.. +.+++.+...++..+++++.|+++||+++|+.+.++.++.+++.++..+..+.+.+++..++.|++.+..
T Consensus 260 ~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 339 (1146)
T PRK08633 260 KEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLF 339 (1146)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 345678888 9999999999999999999999999999999999999988888888888889999999999999999999
Q ss_pred cchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHH
Q 012438 102 NQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASI 165 (463)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~ 165 (463)
.+...+++.+..|+++|++++++.+....+|.++++.++..+.... .++...+++.+.+.++
T Consensus 340 ~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 340 IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLG--LSPAGLFYLIALVTLI 401 (1146)
T ss_pred hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888776654421 3566666665554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-08 Score=93.00 Aligned_cols=135 Identities=18% Similarity=0.091 Sum_probs=98.5
Q ss_pred hhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCC
Q 012438 251 INIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHG 330 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (463)
+......+|.+.++++.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++.+.. ..
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--------- 84 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAG-LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--------- 84 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh---------
Confidence 34455678889999999988887 88899999999999999999999999999988777666555443 21
Q ss_pred CCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc
Q 012438 331 GFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK 402 (463)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 402 (463)
++.+..++...+.+.+.+... +....+..|.+| ++|+.+.++.+....+|..+++.+.+.+.+..+
T Consensus 85 ----~~~~~l~~~~~~~g~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~ 150 (355)
T TIGR00896 85 ----PGTALLFAGTALIGVGIAIIN-VLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG 150 (355)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHh-ccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 223333333444444433322 233345567776 689999999999999999999999888877653
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=95.86 Aligned_cols=142 Identities=13% Similarity=-0.011 Sum_probs=108.6
Q ss_pred ccccCchhHHHHHHHHHH-HHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhh------hhhHHHHHHHHHHhhcc
Q 012438 25 YCKFDSQLLTTFTSSLYI-TGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGS------AFNIYMLIFGRLLLGVG 97 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~l~~~r~l~G~~ 97 (463)
|.|+++++.|++.....+ ...++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.....+.+++
T Consensus 237 ~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (390)
T TIGR02718 237 DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLI 316 (390)
T ss_pred hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHH
Confidence 458899999999888764 66678999999999999999998877666433332221 12334445555666777
Q ss_pred cccccchhhHHhhhcCCC-CcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHH
Q 012438 98 IGFGNQSVPLYLSEMAPP-KYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIG 169 (463)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~ 169 (463)
.+...+...+.+.+..++ +++++.++..+...++|..+++.+++.+.+. .||+..|++.++..++..+.
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~---~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR---FGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHHHHH
Confidence 777778888888788776 7899999999999999999999998887654 46899998887776665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-08 Score=92.72 Aligned_cols=158 Identities=13% Similarity=0.065 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh----hcCCchhhhHh-hHHH
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILAD----KFGRKVLFLVG-GIQM 311 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~ 311 (463)
+.........+ .++.....+.+.++++.|.+..... .......+.+++..++.|+++| |+|||+.++.. ....
T Consensus 7 i~~~~~~~Giq-~~~~l~~~~l~~yl~~lg~~~~~~~-~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 7 LRVASVAAGVQ-FGWALQLSLLTPYVQELGIPHAWAS-IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 33333334433 3456666777888899999887777 8888889999999999999999 59999998775 3444
Q ss_pred HHHHHHHHHHHHhhh--CCC-CCCcchh-HHHHHHHHHHHhhhhhccccceecccccccCCcccc--cchhHHHHHHHHH
Q 012438 312 LVSQVMIGSIMAAQL--GDH-GGFSEGY-AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIR--SAGQSITVAVNFL 385 (463)
Q Consensus 312 ~~~~~~~~~~~~~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~ 385 (463)
.++..++.+...... ... +...... .+..+..+.+..........| ..+++.|..|+++| +.+.++.+....+
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p-~rALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGP-CRAFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCchhHHHHHHHHHHHHHHHH
Confidence 444444333211000 000 0000000 122233333333333333333 35667899998865 5789999999999
Q ss_pred HHHHHHhhhhhh
Q 012438 386 FTFLTAQTFLPM 397 (463)
Q Consensus 386 g~~~~~~~~~~~ 397 (463)
|+.+++.+.+..
T Consensus 164 G~ilg~~~g~~~ 175 (477)
T TIGR01301 164 GNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=96.61 Aligned_cols=133 Identities=19% Similarity=0.174 Sum_probs=92.3
Q ss_pred hhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcch
Q 012438 256 LYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEG 335 (463)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (463)
.-++.+.++.|.++... ++.....+...++.++.|+++|.+|||..++.+.++..++.++..-. +
T Consensus 65 ~~l~~I~~diG~~~~~~--w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------------~ 129 (599)
T PF06609_consen 65 SILPYINADIGGSDNWS--WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------------Q 129 (599)
T ss_pred HHHHHHHHhcCCCccch--HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------------C
Confidence 33466667777664443 56677888899999999999999999999999999988888776643 3
Q ss_pred hHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchh
Q 012438 336 YAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGI 405 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 405 (463)
+....+....+.+.+.+.. .+....++|+.|.+.|..+.++.....-....+++.+...+..+.+|..
T Consensus 130 ~~~~~iag~~l~GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw 197 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW 197 (599)
T ss_pred cHHHHHHHHHHHHHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch
Confidence 3445555666665554332 3444556899999999888776665544444456666655554445544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=95.28 Aligned_cols=122 Identities=10% Similarity=0.019 Sum_probs=97.8
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh--hHHHHHHHHHHhhccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF--NIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 100 (463)
++.+|.++...++......++..++.++++++.||+|+|+.+.++.++.+++.++..+.+ +++.+.+..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 344565555555555555677888999999999999999999999999888877776653 677777788899999999
Q ss_pred ccchhhHHhhhcCCCC-------cccchhhhhhHHHHHHHHHHHHhhhhhc
Q 012438 101 GNQSVPLYLSEMAPPK-------YRGTFNIGFQLCGAIGVLSANLLNYGTQ 144 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~~~ 144 (463)
..+...++.+|..|.+ ++|...+..+....+|..+++.+.+.+.
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988754 3588899999999999999988776553
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=90.85 Aligned_cols=135 Identities=31% Similarity=0.384 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhh--HHHHHHHHHHhhcccccccchhhHH
Q 012438 31 QLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFN--IYMLIFGRLLLGVGIGFGNQSVPLY 108 (463)
Q Consensus 31 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~ 108 (463)
.+.++..+.+.++..+++++.|.++||+|||+.+..+.....++.+++++..+ .+.+++.|+++|++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999999999999999999999998888888776666777777766 8999999999999999999999999
Q ss_pred hhhcCCC-CcccchhhhhhH-HHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHH
Q 012438 109 LSEMAPP-KYRGTFNIGFQL-CGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 166 (463)
Q Consensus 109 i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~ 166 (463)
+.|+.|+ ++|+...+.... ...+|..+++.++..+... ...+||+.|.+........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHH
Confidence 9999997 678888888888 5888888888777666555 4468999777666655443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.4e-09 Score=91.48 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=111.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHH
Q 012438 268 GESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLY 347 (463)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (463)
...+.+ ++.....+.+++.+.+.|.+.||+|+|..+.++.+.+..+.+++++. ...+..++.-.+-
T Consensus 104 e~~~iG-~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------------~sy~~l~vAR~LQ 169 (464)
T KOG3764|consen 104 ENTQIG-LLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------------NSYPMLFVARSLQ 169 (464)
T ss_pred cccchh-HHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------------chhHHHHHHHHHh
Confidence 334444 88999999999999999999999999999999999999999998875 3344666666666
Q ss_pred hhhhhccccceecccccccCCccc-ccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcC
Q 012438 348 SSGYCYSWGPLAWLVPSEIFPLEI-RSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFFLP 425 (463)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (463)
+.+.+.... ...++.++.+|++. |++++|+.-.+..+|-.++|+++|.+++..|....++..++.++....+.+++-
T Consensus 170 gvgsA~~~t-sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 170 GVGSAFADT-SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred hhhHHHHHh-hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence 666665543 44455678888765 699999999999999999999999999999976655555555444444444443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-05 Score=75.06 Aligned_cols=260 Identities=10% Similarity=0.040 Sum_probs=147.0
Q ss_pred CchhHHHHHHHHHHHHHHH-HHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh----h---------------------
Q 012438 29 DSQLLTTFTSSLYITGILG-SLIASSVTRALGRKVSILIGGVAFLAGSALGGSA----F--------------------- 82 (463)
Q Consensus 29 s~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~--------------------- 82 (463)
+...+.++-+...+...+. .++.+++++|++|++++-.....+....+++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3467888888888877766 8999999999999999988777777666665554 1
Q ss_pred ------hHHHHHHHHHHhhcccccccc-hhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC-----Ccc
Q 012438 83 ------NIYMLIFGRLLLGVGIGFGNQ-SVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK-----GGW 150 (463)
Q Consensus 83 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----~~~ 150 (463)
+.|...+.-+...+-.....+ ....++.|.++.+|-.|..+++..+.++|.++++.+...+.+.. ...
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~ 200 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVD 200 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence 123333444444444444444 66788999999999999999999999999999998877665321 112
Q ss_pred hhH----HHHHhhHHHHHHHHHHhhcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhh
Q 012438 151 GWR----ISLAMAAAPASILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKN 226 (463)
Q Consensus 151 gwr----~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (463)
.|. ..+.+.++.+++.....+++.+.. ..+++..+. + +++.+++.+.+..+
T Consensus 201 ~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~---~~~~~~~~~-------------------~---~~~~k~k~k~~~~e 255 (472)
T TIGR00769 201 GWHVSLKNLMVIVICSGLAIILLYWWVNRNV---LTDPRSYNP-------------------A---LKEKKVKPKMSTME 255 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCccccch-------------------h---hccccCCCCCCHHH
Confidence 452 233444443333333333332111 000000000 0 01111222444444
Q ss_pred hhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 012438 227 IAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSL---LLSALVAGGMGTVFAIVSMILADKFGRKVL 303 (463)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 303 (463)
-++...+.+.+..+.+...+.....+.+..-.....++..-++++.. +......++..++..++.+++.+|+|-+..
T Consensus 256 s~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~ 335 (472)
T TIGR00769 256 SLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTA 335 (472)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44444444445444444444333334333323333344433432222 233344455555666667899999988776
Q ss_pred hhHhhHHHHH
Q 012438 304 FLVGGIQMLV 313 (463)
Q Consensus 304 ~~~~~~~~~~ 313 (463)
..+.-++..+
T Consensus 336 a~i~Pii~li 345 (472)
T TIGR00769 336 ALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHH
Confidence 6655555444
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.8e-09 Score=99.00 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=134.7
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhc--chhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccccccc
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRALG--RKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGN 102 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 102 (463)
+.+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+.++++++++.+...-.+.|++.|...
T Consensus 327 ~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~ 406 (509)
T KOG2504|consen 327 SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFS 406 (509)
T ss_pred hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 55889999999999999999999999999999988 4567788888899999999999999999999999999999999
Q ss_pred chhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCC
Q 012438 103 QSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLP 174 (463)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 174 (463)
......+.|..+.++-..+.|+.....+++.++||++++.+.+..+ +|...|+..++..++....++..|
T Consensus 407 ~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 407 SLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--CeeeehhhcChHHHHHHHHHHHhH
Confidence 8888899999999999999999999999999999999987777665 599999999998888887777665
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-07 Score=80.26 Aligned_cols=169 Identities=17% Similarity=0.208 Sum_probs=113.3
Q ss_pred hhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCC
Q 012438 249 TGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGD 328 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (463)
...+.+..|.|.+-++++++..+.. .+.....++..+ .+..|.+.|++|.+.++.++.+...++...+.......
T Consensus 16 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~-~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~--- 90 (250)
T PF06813_consen 16 GTTYTFSAYSPQLKSRLGYSQSQLN-TLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR--- 90 (250)
T ss_pred CcccchhhhhHHHHHHhCCCHHHHH-HHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc---
Confidence 4567888999999999999998888 677777777665 58889999999999999999999999988877654211
Q ss_pred CCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHH
Q 012438 329 HGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFF 408 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 408 (463)
.+....|......++.+.+.+.. .........+.+| +.||++.|+......+++.+-..+...+.+........+
T Consensus 91 ---i~~~~~~~~~~~~~l~~~s~~~~-~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~ 165 (250)
T PF06813_consen 91 ---IPSLPVWLMCLFLFLGGNSSCWF-NTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLF 165 (250)
T ss_pred ---cCccchHHHHHHHHHHcccHHHh-hhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHH
Confidence 11122233322223222222211 1222222246788 689999999999999999999888877776644444444
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 012438 409 FGGLVLIMTTFMHFFLPET 427 (463)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~ 427 (463)
.+....+++++...+++..
T Consensus 166 la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 166 LAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HHHHHHHHHHHHhhheecc
Confidence 4554555555554555433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-08 Score=96.15 Aligned_cols=152 Identities=7% Similarity=-0.053 Sum_probs=121.2
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh----------hhHHHHHHHHHH
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA----------FNIYMLIFGRLL 93 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~l~~~r~l 93 (463)
+++|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.+...-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 4679999999999999999999999999999999999999999999999988664321 344455666788
Q ss_pred hhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCC----cchhHHHHH-hhHHHHHHHHH
Q 012438 94 LGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKG----GWGWRISLA-MAAAPASILTI 168 (463)
Q Consensus 94 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~gwr~~f~-~~~~~~~~~~~ 168 (463)
.+++.+....+...++++..|+++++...++.+...++|..+++.+++.+.+..+ +++.++... +..+..++...
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 8888898999999999999999999999999999999999999998888766443 233333332 33444444444
Q ss_pred HhhcCCC
Q 012438 169 GAIFLPE 175 (463)
Q Consensus 169 ~~~~~~e 175 (463)
...++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 4556885
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-08 Score=86.51 Aligned_cols=131 Identities=11% Similarity=0.035 Sum_probs=102.9
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccch
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 104 (463)
.+|+++.+.+...+.+..+..+|.+..+++.||+|+|+.+.++..+..++.++....++...+ ..-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999999999988888888877666655544333 3556889999999999
Q ss_pred hhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHH
Q 012438 105 VPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAA 161 (463)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~ 161 (463)
..+...+..|+ +.+.+.++. ....+|..+.|.+.+.+.+. .|.+..|++..+
T Consensus 251 ~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~---~g~~~a~~v~~~ 302 (310)
T TIGR01272 251 IFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADC---LGIQLAFALPVP 302 (310)
T ss_pred HHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHh---ccchHHHHHHHH
Confidence 99999998874 445666665 55668889999876666553 357777764433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-08 Score=83.13 Aligned_cols=147 Identities=11% Similarity=0.045 Sum_probs=111.0
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHH-HHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAF-LAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~-~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
.++.||+|+...+.+.+..+.-.++.+++.|.++|++|++...+.+..+. .++..+..|+ ++.=..+-.+.|+....
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysl 368 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSL 368 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHH
Confidence 47788999999999999999999999999999999999997766655444 4444444443 33334556778887666
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA 170 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~ 170 (463)
.......+++...|+++.|++.+..+...++|..+.+++++.+.+-.+.+.|--.|.+......+..+..
T Consensus 369 lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgi 438 (459)
T KOG4686|consen 369 LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGI 438 (459)
T ss_pred HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 6555667788888999999999999999999999999999988876665667666655444333333333
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-07 Score=85.84 Aligned_cols=179 Identities=12% Similarity=0.085 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHhhhhhhHHHhhHHHHH-HHcC----CCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhHhh
Q 012438 235 QLVMAILIPFFQQVTGINIVGLYSPVLF-RTLK----LGESTSLLLSALVAGGMGTVFAIVSMILADK-FGRKVLFLVGG 308 (463)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~ 308 (463)
+-++.++..=+..-++++.+...+..|+ .+.+ ++++++. .+...+....-+..+++||++|| +|+|+.+..+.
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~-~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHAT-GLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3344444445555556666655555554 3444 8888877 45555555567788899999999 59999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcc--cccchhHHHHHHHHHH
Q 012438 309 IQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVNFLF 386 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g 386 (463)
+++.++.+++.... ........+.+.+...+.+.. -|....+..|++|++ .|-.++++.++..++|
T Consensus 100 il~~iGh~~L~~~~-----------~~~~~gl~i~L~~I~iG~Gl~-K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiG 167 (498)
T COG3104 100 ILMAIGHLVLAISS-----------VSGPGGLYIGLALIIVGTGLF-KPNISSLLGELYPKDDPRRDGGFTLFYMGINIG 167 (498)
T ss_pred HHHHHHHHHHhccc-----------cccccHHHHHHHHHHhccccc-cccHHHHHHHhcCCCCcccCCCccEEEEEeehH
Confidence 99999999887641 011233344444444444433 455556668888753 4788889999999999
Q ss_pred HHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcCC
Q 012438 387 TFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFFLPE 426 (463)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (463)
+.++|.+.+.+.+..++..-+..+++....+++.+...++
T Consensus 168 sl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 168 SLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999888888888888888887777664
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-07 Score=91.97 Aligned_cols=142 Identities=14% Similarity=0.105 Sum_probs=104.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHH
Q 012438 268 GESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLY 347 (463)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (463)
+..... ...++..++..+|+++.|.++||+|||+++.++..+..++.+...+. ++.+...+.-++.
T Consensus 116 ~~~~~~-~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~~~~~~Rfl~ 181 (521)
T KOG0255|consen 116 SSTLVA-LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYWMFLIFRFLS 181 (521)
T ss_pred cHhHHH-HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHHHHHHHHHHH
Confidence 333333 77788889999999999999999999999999999999888766664 4455555555655
Q ss_pred hhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCC
Q 012438 348 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFFLPET 427 (463)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (463)
+.+.+.. ..+...+..|.++++.|+.+..+ ......++.+++...+++.. +|........+..+..++..+..+|.
T Consensus 182 G~~~~~~-~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es 257 (521)
T KOG0255|consen 182 GFFGSGP-LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPES 257 (521)
T ss_pred Hhhccch-hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcC
Confidence 5554433 45666777899999999999999 88888899999999888887 44444444444444333334445454
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=89.61 Aligned_cols=149 Identities=21% Similarity=0.152 Sum_probs=114.9
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHH
Q 012438 265 LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMV 344 (463)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
+.+++.+.+ ++......+.+++.+.++++.||+|-|+++..+.++.++..++...... ...+..++.-
T Consensus 68 ~~ws~~~k~-~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----------~~~~~~~~~R 135 (466)
T KOG2532|consen 68 YDWSSTEKG-LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----------IGFYLLLVLR 135 (466)
T ss_pred ecCCHHHHH-HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----------hcchhhHHHH
Confidence 455566666 7888888999999999999999999999999999999988888877631 2233445555
Q ss_pred HHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhc-ccch-hHHHHHHHHHHHHHHHHH
Q 012438 345 CLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCH-FKAG-IFFFFGGLVLIMTTFMHF 422 (463)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 422 (463)
.+.+.+.+..+ |....+.++-.|++.|++..++.....++|.++.-++.|.+.+. .||. .+++.+++.++..++.++
T Consensus 136 ~lqGl~~g~~~-pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 136 FLQGLGQGVLF-PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred HHhHHHHhHHH-hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 66666665554 45556668999999999999999999999999999999999998 7765 455566666665555555
Q ss_pred hcCC
Q 012438 423 FLPE 426 (463)
Q Consensus 423 ~~~~ 426 (463)
+..+
T Consensus 215 ~~~d 218 (466)
T KOG2532|consen 215 FYSD 218 (466)
T ss_pred HhcC
Confidence 5443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.6e-08 Score=87.67 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=123.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhh
Q 012438 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVP 106 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 106 (463)
+.++...|.+.+...+.-++.-.+..++.+|+|.|+.++++.++..+=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCcccchhhh-hhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCC
Q 012438 107 LYLSEMAPPKYRGTFNIG-FQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPET 176 (463)
Q Consensus 107 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~ 176 (463)
.|+++.+|++-.++...+ .+.+.++|..+.+.+++.+.+. .|.+..|++.+.+.++..++..+ ++++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~---~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR---IGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh---cCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 999999998887776666 4788889999888887776654 57899999888887777766665 5443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-07 Score=86.86 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=119.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh-hhHHHH----HHHHHHhhccccccc
Q 012438 28 FDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA-FNIYML----IFGRLLLGVGIGFGN 102 (463)
Q Consensus 28 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l----~~~r~l~G~~~~~~~ 102 (463)
.+....+.+.++..++-.+.-...+++..|+|.|++++++.+.+++=..+.+.. ++.+.. ++...+.|+..+..+
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 566677888888888888999999999999999999999999999988888877 454433 334567999999999
Q ss_pred chhhHHhhhcCCCCcccchhhhhhH-HHHHHHHHHHHhhhhhcccCCc---chhHHHHHhhHHHHHHHHHHhhc-CCCC
Q 012438 103 QSVPLYLSEMAPPKYRGTFNIGFQL-CGAIGVLSANLLNYGTQKIKGG---WGWRISLAMAAAPASILTIGAIF-LPET 176 (463)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~---~gwr~~f~~~~~~~~~~~~~~~~-~~e~ 176 (463)
.....++.+..|++.|+++.+++.. ..++|..+|..+++.+.+..+. +.|...+.+.+...++..+++++ .+|+
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999876 4689999999999888765332 34667777777776666665544 5543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5e-07 Score=75.60 Aligned_cols=310 Identities=14% Similarity=0.109 Sum_probs=160.4
Q ss_pred CccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccc
Q 012438 24 NYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQ 103 (463)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 103 (463)
+.++....++|.+.-..+-..++...+.|-++|+-|||+.-+.-.+.+++++ ++-.++.|-.++++|.+-|+..+..+.
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFS 143 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFS 143 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHH
Confidence 3457788888888888888888889999999999999998666555555433 455678999999999999999988887
Q ss_pred hhhHH-hhhcCCCCcccchhhhh----h----HHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-C
Q 012438 104 SVPLY-LSEMAPPKYRGTFNIGF----Q----LCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-L 173 (463)
Q Consensus 104 ~~~~~-i~~~~~~~~r~~~~~~~----~----~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~ 173 (463)
...++ +.|.- ++|+.-.-+. . .+..+=.+++++.+-.+.+..+ .|--.+|-..+.+..+...+.+- .
T Consensus 144 aFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~s-lGPVAPFdAAacfLaigmAvil~~W 220 (454)
T KOG4332|consen 144 AFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS-LGPVAPFDAAACFLAIGMAVILSSW 220 (454)
T ss_pred HHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHhhh
Confidence 77766 45554 3444311111 1 1222223333333322222211 23344554433332222222111 1
Q ss_pred CCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhH
Q 012438 174 PETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINI 253 (463)
Q Consensus 174 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (463)
.|. -++ ..+.++.+.+.++. .+.+. ..++..+.-.+...+....+..
T Consensus 221 ~EN------ygd-ps~~kdlltqf~ga-----------------------a~aia---SD~ki~LLG~iqsLFE~smytF 267 (454)
T KOG4332|consen 221 SEN------YGD-PSENKDLLTQFKGA-----------------------ARAIA---SDEKIALLGAIQSLFEGSMYTF 267 (454)
T ss_pred hhc------cCC-hhhhHHHHHHhhHh-----------------------HHHHh---cchHHHHHHHHHHHHhhhhhee
Confidence 111 111 22222222211110 01111 1122233334444444444444
Q ss_pred HHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--hhhhHhhHHHHHHHHHHHHHHHhhhCCCCC
Q 012438 254 VGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRK--VLFLVGGIQMLVSQVMIGSIMAAQLGDHGG 331 (463)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (463)
...|.|.+--+ +...--+.+...+....++|+-+..++..|-..| ..+.+.+.+.++.+.+...... ..+
T Consensus 268 VFLWTPaLspn---~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~-----vsP 339 (454)
T KOG4332|consen 268 VFLWTPALSPN---DEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS-----VSP 339 (454)
T ss_pred eeeecccCCCC---cccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc-----cCC
Confidence 45566654211 1111112555666667777777776666553332 3445554544444433332211 111
Q ss_pred CcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHH
Q 012438 332 FSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITV 380 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 380 (463)
+...+...++..+++-.+.+..|+.++ -+-++..|++.|++.+-+..
T Consensus 340 -~kes~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 340 -SKESPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred -CcCCchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhhee
Confidence 123344446666766666666665444 44478889998887655443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-09 Score=105.36 Aligned_cols=142 Identities=22% Similarity=0.217 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhcc
Q 012438 275 LSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYS 354 (463)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (463)
.......++..+|+++.|+++||+|||+.+..+..+..++.++..+.. ...+.+...+.-.+.+.+.+..
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP----------SYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccccccc
Confidence 677888899999999999999999999999999999888887776641 0013445555555555555443
Q ss_pred ccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc---cchhHHHHHHHHHHHHHHHHHhcCCC
Q 012438 355 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF---KAGIFFFFGGLVLIMTTFMHFFLPET 427 (463)
Q Consensus 355 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (463)
.+....+..|..|++.|+...++.+....+|..++..+.....+.. .|.....+..+..+...+...++||.
T Consensus 120 -~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 120 -YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred -ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566677789999999999999999888888777766554332222 25555555555555555556677876
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.8e-07 Score=85.90 Aligned_cols=140 Identities=21% Similarity=0.129 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhc
Q 012438 274 LLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCY 353 (463)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (463)
.++.+...++..++.++.|+++|++|||+.+.++.+...++.++.... .+.....+.-.+.+.+.+.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------------~~~~~l~~GR~l~G~g~G~ 158 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------------PSWYQLIVGRILTGLGVGG 158 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHhccchhh
Confidence 378888999999999999999999999999999999999998888875 3466667777777766665
Q ss_pred cccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc--cchhHHHHHHHHHHHHHHHHHhcCCCC
Q 012438 354 SWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF--KAGIFFFFGGLVLIMTTFMHFFLPETK 428 (463)
Q Consensus 354 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (463)
.. .+...+.+|..|++.||...+.......+|..++ .+.+...++. +|...+....+..+...+..++.||+.
T Consensus 159 ~~-~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp 233 (513)
T KOG0254|consen 159 AS-VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP 233 (513)
T ss_pred hh-hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 54 4555677999999999999999999888777777 5555555543 566655555555555555567777653
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.1e-07 Score=86.48 Aligned_cols=116 Identities=9% Similarity=0.063 Sum_probs=91.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHhhcccccccc
Q 012438 29 DSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGS-----AFNIYMLIFGRLLLGVGIGFGNQ 103 (463)
Q Consensus 29 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~ 103 (463)
+....+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777888999999999999999999999888877666555432 35567777788889999999999
Q ss_pred hhhHHhhhcCCC-------CcccchhhhhhHHHHHHHHHHHHhhhhhc
Q 012438 104 SVPLYLSEMAPP-------KYRGTFNIGFQLCGAIGVLSANLLNYGTQ 144 (463)
Q Consensus 104 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~~~ 144 (463)
...++++|..+. ++.|...+......-+|..+++.+.+.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999662 22344888888888899988887776654
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=85.82 Aligned_cols=119 Identities=19% Similarity=0.187 Sum_probs=90.0
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh----hcchhhhhH-HHHHHHHHHHhhhhhhhH---------------
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRA----LGRKVSILI-GGVAFLAGSALGGSAFNI--------------- 84 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~~~~-~~~~~~i~~~~~~~~~~~--------------- 84 (463)
+.|++....+.+--+..+...+.+++.|..+|| |||||.++. +....+++.++..++.++
T Consensus 61 ~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~r 140 (498)
T KOG0637|consen 61 SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPR 140 (498)
T ss_pred HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchH
Confidence 346677777777777788888999999999995 999876655 455566777777776543
Q ss_pred --HHHHHHHHHhhcccccccchhhHHhhhcCCCCcccc-hhhhhhHHHHHHHHHHHHhhhhh
Q 012438 85 --YMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGT-FNIGFQLCGAIGVLSANLLNYGT 143 (463)
Q Consensus 85 --~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~~~~~~ 143 (463)
..++++--+.=++.-.....+.+++.|...++++.+ +++.+....++|..+|..++.+.
T Consensus 141 ai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 141 AIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 234444455555666778899999999998777766 99999999999999988887633
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-06 Score=83.50 Aligned_cols=114 Identities=17% Similarity=0.104 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHhhcccccccchhhHHh
Q 012438 32 LLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGS--AFNIYMLIFGRLLLGVGIGFGNQSVPLYL 109 (463)
Q Consensus 32 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 109 (463)
..+.+.....+...++.+++++++||+|+|+.+..+.++.+++.....+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667888889999999999999999998888766654433222 35777788888999999999999999999
Q ss_pred hhcCCCC-------cccchhhhhhHHHHHHHHHHHHhhhhhcc
Q 012438 110 SEMAPPK-------YRGTFNIGFQLCGAIGVLSANLLNYGTQK 145 (463)
Q Consensus 110 ~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~ 145 (463)
+|..+.+ ..|...+.......+|..+++.+++.+.+
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988622 23456788888888999888888776543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-06 Score=76.75 Aligned_cols=150 Identities=17% Similarity=0.066 Sum_probs=108.1
Q ss_pred HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHH
Q 012438 263 RTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILV 342 (463)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (463)
..-+.+..+.. ++......+..+++...|...|++|||+...+......+..++-... ++.....+
T Consensus 106 ~~w~~s~~q~~-llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s-------------pnf~~L~~ 171 (528)
T KOG0253|consen 106 EVWGPSEGQAP-LLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS-------------PNFASLCV 171 (528)
T ss_pred hhhchhhhhhh-HHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC-------------CCeehhhH
Confidence 33455555666 77777778899999999999999999998887766665554443321 33344444
Q ss_pred HHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 012438 343 MVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMHF 422 (463)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (463)
+-++.+++.+. .|...++-.|..|...|..-+-+. +...+|..+...+.-......||...++....-.......++
T Consensus 172 f~~l~~~g~gg--~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~ 248 (528)
T KOG0253|consen 172 FRALWGFGVGG--LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLV 248 (528)
T ss_pred HHHHHhccCCC--ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHh
Confidence 55555555544 466666667999999998887666 777888888888877778888888887777776777777788
Q ss_pred hcCCCCC
Q 012438 423 FLPETKN 429 (463)
Q Consensus 423 ~~~~~~~ 429 (463)
+++|..+
T Consensus 249 w~~ESpR 255 (528)
T KOG0253|consen 249 WVYESPR 255 (528)
T ss_pred hcccCcc
Confidence 8887643
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.4e-07 Score=84.11 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh--hHHHHHHHHHHhhcccccccchhhHH
Q 012438 31 QLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF--NIYMLIFGRLLLGVGIGFGNQSVPLY 108 (463)
Q Consensus 31 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~ 108 (463)
...+.+.....++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5678888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred hhhcCCC-------CcccchhhhhhHHHHHHHHHHHHhhhhhc
Q 012438 109 LSEMAPP-------KYRGTFNIGFQLCGAIGVLSANLLNYGTQ 144 (463)
Q Consensus 109 i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~~~ 144 (463)
++|..+. ++.|...+.......+|..+++.+.+.+.
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9999873 33467888888888888888888766553
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.8e-07 Score=83.92 Aligned_cols=151 Identities=16% Similarity=0.072 Sum_probs=104.7
Q ss_pred HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHH
Q 012438 264 TLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVM 343 (463)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (463)
+.+...++.+ ...+.+.++.+++.+.++.+.||++-.+.+....++..+..++-... ++.+..++.
T Consensus 75 dl~~~~~~l~-~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------------~s~~~~ial 140 (495)
T KOG2533|consen 75 DLKLVGNQLG-VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------------HSFPGLIAL 140 (495)
T ss_pred ccchhhhhhh-hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------------hhhHHHHHH
Confidence 3344445555 78888999999999999999999995444443333332222222111 445566666
Q ss_pred HHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhh------cccch-hHHHHHHHHHHH
Q 012438 344 VCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLC------HFKAG-IFFFFGGLVLIM 416 (463)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~ 416 (463)
-++.+..-+.+++ ....++...+.++.|+..+|+.+....+|+++++.+...+.+ ..||. .+.+-+++.++.
T Consensus 141 r~llGl~es~~wP-~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~ 219 (495)
T KOG2533|consen 141 RFLLGLFESGGWP-GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVL 219 (495)
T ss_pred HHHHHHHhcccch-HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHH
Confidence 6777776666654 445566899999999999999999999999999998877543 23444 455566666777
Q ss_pred HHHHHHhcCCCCC
Q 012438 417 TTFMHFFLPETKN 429 (463)
Q Consensus 417 ~~~~~~~~~~~~~ 429 (463)
+++.++++|+...
T Consensus 220 gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 220 GIVVFFFLPDNPS 232 (495)
T ss_pred HheEEEEecCChh
Confidence 7777888887654
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.8e-06 Score=77.07 Aligned_cols=116 Identities=21% Similarity=0.059 Sum_probs=77.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhh
Q 012438 270 STSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSS 349 (463)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (463)
....+.+.....++.++|.++.|++.||+|||++.....+++.++.++.... ...+.+....++....-.+.+.
T Consensus 83 s~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s------~~~~~~~~~m~~L~~~R~~LGi 156 (538)
T KOG0252|consen 83 SGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLS------VGTTSPLGVMMTLCFFRFLLGI 156 (538)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccC------CCCCCCcchhhHHHHHHHHhhc
Confidence 3344477888889999999999999999999999998888888887744332 1111111112222223333344
Q ss_pred hhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHh
Q 012438 350 GYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQ 392 (463)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 392 (463)
+.+ +-.|+..++++|....+.||+-.+.......+|...+..
T Consensus 157 GIG-GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~i 198 (538)
T KOG0252|consen 157 GIG-GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGI 198 (538)
T ss_pred ccc-CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccH
Confidence 433 335888899999999999998888776666555444443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.5e-06 Score=73.29 Aligned_cols=145 Identities=17% Similarity=0.054 Sum_probs=106.6
Q ss_pred HHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHH
Q 012438 244 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMA 323 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 323 (463)
++.............|.+.+.+..+..++. .+......+..+.++..+++.+|+|+|+-+..+..++++++.++.-..
T Consensus 22 Ffl~G~~~~l~diLip~l~~~f~ls~~~a~-liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa- 99 (422)
T COG0738 22 FFLWGFITCLNDILIPHLKEVFDLTYFEAS-LIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA- 99 (422)
T ss_pred HHHHHHHhhcchhhHHHHHHHhCccHHHHH-HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh-
Confidence 333333444455677888888888888888 888888899999999999999999999999999999999988876431
Q ss_pred hhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhc
Q 012438 324 AQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCH 400 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 400 (463)
........+..+.+.+.+.+.. -.....+++.+.|++..+.-+.+...++.+|+.++|.+.+.+..+
T Consensus 100 ---------~~~~y~~FL~~lFila~Gi~~L-etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 100 ---------SSKSYGFFLVALFILASGIGLL-ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred ---------hhhhHHHHHHHHHHHHhhhHHH-HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 1122223333333333333222 334456667888888888889999999999999999999988873
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=81.24 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=105.2
Q ss_pred HHHHH--cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchh
Q 012438 260 VLFRT--LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGR-KVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGY 336 (463)
Q Consensus 260 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
.|+++ .+-+.+..+ +......++..+++++.|+...|.++ |+.++.+.+++.++.++....... ++..
T Consensus 59 pYl~~lD~~A~~~ffG-~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~--------~~~~ 129 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFG-LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV--------PNGV 129 (488)
T ss_pred hhhhhcCCCCCcchhh-HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc--------ccch
Confidence 34455 444444444 88888999999999999999999886 888889999999998888544221 1224
Q ss_pred HHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhh---hc---------c--c
Q 012438 337 AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPML---CH---------F--K 402 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~---~~---------~--~ 402 (463)
.++.+++-.+.+.+ .+.....-.|.++.-..+.|.++++..+....+|.++||.+...+. +. + .
T Consensus 130 ~y~mL~~R~l~Gvg--~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~Y 207 (488)
T KOG2325|consen 130 KYLMLVARILTGVG--VGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMY 207 (488)
T ss_pred HHHHHHHHHHcCcC--cccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEec
Confidence 45555555554444 3334566777777666788888888888877777777776543322 11 0 1
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012438 403 AGIFFFFGGLVLIMTTFMHFFLPETKNV 430 (463)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (463)
....++...+.++..+++.++.+|..+.
T Consensus 208 Tap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 208 TAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred chHHHHHHHHHHHHHHHHHhheeecccC
Confidence 2344555556666666666777775543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-06 Score=68.11 Aligned_cols=114 Identities=22% Similarity=0.157 Sum_probs=95.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHH
Q 012438 29 DSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLY 108 (463)
Q Consensus 29 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 108 (463)
++..--.-.++.+....+++++.+.+.+++|.|+.++++.+.+.+-... -+-++.+.++.+-++.|++.+..+.....+
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~y 113 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTY 113 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence 3333344556667777888888999999999999999999999864444 356778899999999999999999999999
Q ss_pred hhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhh
Q 012438 109 LSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGT 143 (463)
Q Consensus 109 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 143 (463)
+.+..++++|++..+++......+.++|.++..++
T Consensus 114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998988888876554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.3e-06 Score=73.09 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=114.0
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccc
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRA-LGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQ 103 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 103 (463)
|-|+|..+.|++.+...+.....++....+++| -.+|+..+....++.++.+.+.+.+.-..+.- -+++|+|.|+.++
T Consensus 237 ~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~ 315 (395)
T COG2807 237 DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFP 315 (395)
T ss_pred HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHH
Confidence 348899999999999999999999999999996 45678888888888888888878765444433 4999999999999
Q ss_pred hhhHHhhhcCCCC-cccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc
Q 012438 104 SVPLYLSEMAPPK-YRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF 172 (463)
Q Consensus 104 ~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 172 (463)
.+...+.+..+.. +-++..++.|....+=...||.+.+++-+..+ +|+...+..+...+...+.-+.
T Consensus 316 laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 316 LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHHHhh
Confidence 9999999887643 44556666666666666677888777766654 8999988887777776666554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-05 Score=72.60 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=95.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh--hHHHHHHHHHHhhcccccccch
Q 012438 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF--NIYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~ 104 (463)
|.+..+..+.......+..++.+++.++.+|+|+|+++.++.+++.++.++..+.+ +.+.+++..++.++|.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 44555666777777888888899999999999999999999999999999988876 7888999999999999999999
Q ss_pred hhHHhhhcCCC-------CcccchhhhhhHHHHHHHHHHHHhhhhh
Q 012438 105 VPLYLSEMAPP-------KYRGTFNIGFQLCGAIGVLSANLLNYGT 143 (463)
Q Consensus 105 ~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 143 (463)
..++++|..+- +.-|...+......-+|..++..+.++.
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877652 2235567777777778888777554443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-05 Score=71.97 Aligned_cols=155 Identities=17% Similarity=0.106 Sum_probs=127.4
Q ss_pred ccCCccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhh-hhcchhhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHH
Q 012438 17 REDTKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTR-ALGRKVSILIGGVAFLAGSALGG---SAFNIYMLIFGRL 92 (463)
Q Consensus 17 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~r~ 92 (463)
.-+|.-.+.||++..|..-++.....|..++-...|++.. |.++|+.-.++..+..++..+.. ...+.+.+...-+
T Consensus 230 iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~ 309 (403)
T PF03209_consen 230 ILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVF 309 (403)
T ss_pred HcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3456667889999999999999999999999999999887 67777877777777776665544 3467899999999
Q ss_pred HhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccC-------CcchhHHHHHhhHHHHHH
Q 012438 93 LLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIK-------GGWGWRISLAMAAAPASI 165 (463)
Q Consensus 93 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-------~~~gwr~~f~~~~~~~~~ 165 (463)
+.|++.|.+.....+...+..++++.|..+|.+.....++..++..+++.+.+.. ...++-.+|.+.++..++
T Consensus 310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~ 389 (403)
T PF03209_consen 310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA 389 (403)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988888888775532 124677888887777666
Q ss_pred HHHHhh
Q 012438 166 LTIGAI 171 (463)
Q Consensus 166 ~~~~~~ 171 (463)
.+.+..
T Consensus 390 a~~ll~ 395 (403)
T PF03209_consen 390 ALVLLG 395 (403)
T ss_pred HHHHHH
Confidence 555543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.6e-05 Score=67.24 Aligned_cols=164 Identities=18% Similarity=0.091 Sum_probs=95.0
Q ss_pred hhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCC
Q 012438 251 INIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHG 330 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (463)
......|.-.+.+++|++..+.. .+.........+...+.|.++||+|||+..+...++..++++.--.
T Consensus 50 DWLQGpY~Y~LY~~yg~~~~qIa-~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~---------- 118 (354)
T PF05631_consen 50 DWLQGPYLYALYESYGFSEHQIA-ILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS---------- 118 (354)
T ss_pred HHhhcchhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc----------
Confidence 33333444455678899988888 7777777888888889999999999999988888887777754321
Q ss_pred CCcchhHHHHHHHHHHHhhhhhccccceecccccc----cCCcccccchhHHHHH-HHHHHHHHHHhhhhhhhhcccc--
Q 012438 331 GFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSE----IFPLEIRSAGQSITVA-VNFLFTFLTAQTFLPMLCHFKA-- 403 (463)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~-- 403 (463)
++.+..++.-.+.+......+...-.-++.| -+|++..+..++...+ .+.+-++.+..+...+.+..+.
T Consensus 119 ----~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~ 194 (354)
T PF05631_consen 119 ----SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP 194 (354)
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC
Confidence 2334444444444444333322221112233 3455555555665552 3444555555566566665543
Q ss_pred hhHHHHHHHHHHH-HHHHHHhcCCCCC
Q 012438 404 GIFFFFGGLVLIM-TTFMHFFLPETKN 429 (463)
Q Consensus 404 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ 429 (463)
..++..++.+.++ ++++....+|..+
T Consensus 195 vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 195 VAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred cchHHHHHHHHHHHHHHHHhcccccCC
Confidence 4444444444444 4443344455443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.9e-05 Score=73.18 Aligned_cols=136 Identities=17% Similarity=0.213 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhcccccee
Q 012438 280 AGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLA 359 (463)
Q Consensus 280 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (463)
.++..++.+...|.++|++|||..+....+...+..+.+.+. . ++.++...+.+ ++ .......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-------------~--~~~~~~~~l~g-~~-~~~~s~~ 133 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-------------G--YWFFLLLGLSG-GF-SAIFSVG 133 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-------------H--HHHhhhccccc-ch-hhhhhhh
Confidence 367788889999999999999999988887777766666553 1 22222222221 11 2223455
Q ss_pred cccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHH-HHHHHHHHHHHHHHhcCCCCCCCH
Q 012438 360 WLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFF-FGGLVLIMTTFMHFFLPETKNVPI 432 (463)
Q Consensus 360 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 432 (463)
.+++++....+.|....|+.+.....+..++|.+.+.+.+..+....+. ..+...+..+.....+||+..++.
T Consensus 134 ~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 134 FAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 6777899999999999999999999999999999999999887554444 444444555555667788765543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-06 Score=59.07 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=62.7
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHH
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLI 88 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~ 88 (463)
|.+++|.++|.++.|++.+..++||.+|++...++.++..+++.+..+++...+..+.+++.++.+.+.
T Consensus 16 P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 16 PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 445777799999999999999999999999999999998889999999999999999999998887653
|
Note that many members are hypothetical proteins. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-06 Score=80.75 Aligned_cols=143 Identities=15% Similarity=0.071 Sum_probs=121.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhh
Q 012438 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVP 106 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 106 (463)
+..+...|........+-.+.-++.+++..++|+-+++.+++.+..+=.+...+.+|.|..+-..+++|+..+..|.+..
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence 44666677777777888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCcccchhhhhhHH-HHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc
Q 012438 107 LYLSEMAPPKYRGTFNIGFQLC-GAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF 172 (463)
Q Consensus 107 ~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 172 (463)
+|++...||+-|..+.++.+.. .++|--+|.++|+.+... ++=|..|.+.++.+++.+++...
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~---fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER---FGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---ehhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887654 456777777777666554 46788998888888877666544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.2e-05 Score=69.98 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=37.8
Q ss_pred HhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhh
Q 012438 93 LLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGT 143 (463)
Q Consensus 93 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 143 (463)
+.=+-++.--.+.-.+.-....+++++.+..-...+.+.|..++..+-..+
T Consensus 127 ~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 127 ILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred HHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 333445556666777777788889999999999999999988887664333
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0047 Score=58.85 Aligned_cols=258 Identities=14% Similarity=0.108 Sum_probs=142.4
Q ss_pred CchhHHHHHHHHHH-HHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh---------h----------------
Q 012438 29 DSQLLTTFTSSLYI-TGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA---------F---------------- 82 (463)
Q Consensus 29 s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---------~---------------- 82 (463)
+...+..+-....+ +..+...+..++++|++|++++-+....+.....+.++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45556666555555 344567889999999999999887776666555555442 1
Q ss_pred ------hHHHHHHHHHHhhcccccccc-hhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcc-cC-----Cc
Q 012438 83 ------NIYMLIFGRLLLGVGIGFGNQ-SVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQK-IK-----GG 149 (463)
Q Consensus 83 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~-----~~ 149 (463)
+.|...+.-+..-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+...+.+ .. +.
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~ 215 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV 215 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 112333333333332233322 356778899999999999999999999999999988777766 11 12
Q ss_pred chhHHHHHh-h---HHHHHHHHHHhhcCC----CChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccC
Q 012438 150 WGWRISLAM-A---AAPASILTIGAIFLP----ETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSIT 221 (463)
Q Consensus 150 ~gwr~~f~~-~---~~~~~~~~~~~~~~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (463)
..|...... . .+.+++......++. +.|... ....++.+++.+
T Consensus 216 ~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~-----------------------------~~~~~~kk~k~k 266 (491)
T PF03219_consen 216 DAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY-----------------------------PSAKKKKKKKPK 266 (491)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc-----------------------------hhhhcccccCCC
Confidence 356544322 1 122222222222221 111100 011112233344
Q ss_pred CchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHhhc
Q 012438 222 HPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSL---LLSALVAGGMGTVFAIVSMILADKF 298 (463)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~ 298 (463)
.+.++-++...+.+.+..+.+.........+.+..-.....++..-++.+.. +......++..++..++++.+.+|+
T Consensus 267 ~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~ 346 (491)
T PF03219_consen 267 MSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRF 346 (491)
T ss_pred ccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555544555555555555544444444444433444444333333211 2334455666666678888999999
Q ss_pred CCchhhhHhhHHHHHHH
Q 012438 299 GRKVLFLVGGIQMLVSQ 315 (463)
Q Consensus 299 g~~~~~~~~~~~~~~~~ 315 (463)
|-+....+.-+.+.+..
T Consensus 347 GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 347 GWRTAALITPIVILITG 363 (491)
T ss_pred hHHHHHHHhHHHHHHHH
Confidence 98877666544444433
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00012 Score=65.05 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=73.1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhcchhhhh------HHHHHHHHHHHhh------hhhhhHHHHHH
Q 012438 27 KFDSQLLTTFTSSLYITGILGSLIASSVTR-----ALGRKVSIL------IGGVAFLAGSALG------GSAFNIYMLIF 89 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~~~------~~~~~~~i~~~~~------~~~~~~~~l~~ 89 (463)
|+|.++.+...-++. - ...-++|.++.| |+||||.-+ +|.++..++...- +-.++...+..
T Consensus 61 ~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~ 138 (510)
T KOG3574|consen 61 GVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTL 138 (510)
T ss_pred Ccchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHH
Confidence 455555554332221 1 124567889999 999998543 3333333332211 11244444555
Q ss_pred HHHHhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhh
Q 012438 90 GRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLN 140 (463)
Q Consensus 90 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 140 (463)
.-++.-+.++..-.+.-.+.-.+..+++-|-+......+...|..++..+-
T Consensus 139 ~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 139 LFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 566777778888888888888999999999999998888888888887663
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00055 Score=64.52 Aligned_cols=135 Identities=11% Similarity=0.030 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHh----hh----hhhhHHHHHHHHHHhhcccccccchhhHHhh
Q 012438 39 SLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSAL----GG----SAFNIYMLIFGRLLLGVGIGFGNQSVPLYLS 110 (463)
Q Consensus 39 ~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~----~~----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 110 (463)
...+...+..+..-.+..|+..|.-+..++++..+..++ .. -...++..++.-++.|++.+........+.+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~ 132 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG 132 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence 333444444444445555566543333443322222111 11 1135777778888999999998888888776
Q ss_pred hcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCc-----chhHHHHHhhHHHHHHHHHHhhcCCCChH
Q 012438 111 EMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGG-----WGWRISLAMAAAPASILTIGAIFLPETPN 178 (463)
Q Consensus 111 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----~gwr~~f~~~~~~~~~~~~~~~~~~e~~~ 178 (463)
.+|++ .+..+..|.+++.+++.++........++ .+=...|.+..++.+++++....++..|.
T Consensus 133 -~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 133 -VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred -cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 45543 45566666666666665553332211111 11223344455555555555555776664
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.5e-05 Score=69.23 Aligned_cols=108 Identities=21% Similarity=0.259 Sum_probs=85.7
Q ss_pred hhhhHHHHHHHHHHHhhhhh---hh------HHHHHHHHHHhhcccccccchhhHHhhhcCCCCc---ccchhhhhhHHH
Q 012438 62 VSILIGGVAFLAGSALGGSA---FN------IYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKY---RGTFNIGFQLCG 129 (463)
Q Consensus 62 ~~~~~~~~~~~i~~~~~~~~---~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~ 129 (463)
|+++++.+++.+|.++..++ .+ .+.++++-.+.++|.|+.-|....+.+|.+++++ |.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888888888885444 22 3678999999999999999999999999998763 455788899999
Q ss_pred HHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc
Q 012438 130 AIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF 172 (463)
Q Consensus 130 ~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 172 (463)
++|..++..+..++.+. .||.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~---~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN---YGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHC---S-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccc---cchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999887666643 58999999998888777666655
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.2e-05 Score=71.01 Aligned_cols=142 Identities=17% Similarity=0.113 Sum_probs=87.6
Q ss_pred hhhHHHhhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCchhh-hHhhHHHHHHHHHHHHHHH
Q 012438 250 GINIVGLYSPVLFR-TLKLGESTSLLLSALVAGGMGTVFAIVSMILADK----FGRKVLF-LVGGIQMLVSQVMIGSIMA 323 (463)
Q Consensus 250 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~-~~~~~~~~~~~~~~~~~~~ 323 (463)
.......|+.+++. ..|.++...+ .+..+.-+...+.-++.|+++|| +|||+.. .++.+.++++..++...
T Consensus 24 ~~~~~~~~l~~fyt~~~Gl~~~~~g-~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~-- 100 (460)
T PRK11462 24 IFDNVMLYMMFFYTDIFGIPAGFVG-TMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST-- 100 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHH-HHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC--
Confidence 34445556666554 5687777766 88888889999999999999997 5776554 45556665554443221
Q ss_pred hhhCCCCCCcchh-HHHHHHHHHHHhhhhhccccceecccccccCC-cccccchhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 012438 324 AQLGDHGGFSEGY-AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFP-LEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF 401 (463)
Q Consensus 324 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 401 (463)
+ +.+... .....+...++..++.....| ..++..|+.+ +++|++..+.-...+.+|..+++.+..++....
T Consensus 101 ---p---~~s~~~~~~y~~~~~~~~~~~~t~~~ip-y~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~ 173 (460)
T PRK11462 101 ---P---DLSMNGKMIYAAITYTLLTLLYTVVNIP-YCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI 173 (460)
T ss_pred ---C---CCCcchHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 001111 222233333334444433333 2344467665 689999999999999998888877766655443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.3e-05 Score=51.11 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=55.9
Q ss_pred HHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHH
Q 012438 243 PFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQ 310 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 310 (463)
.++..+.+...+.-|.|.++++.|.+..+.+ .+..+..+..+++.++.|.++||.++++........
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iG-il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIG-ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3444455667788899999999999999998 889999999999999999999999998877655443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.021 Score=53.23 Aligned_cols=263 Identities=13% Similarity=0.042 Sum_probs=144.9
Q ss_pred CchhHHHHHHHHHH-HHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh---------hh---------------
Q 012438 29 DSQLLTTFTSSLYI-TGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA---------FN--------------- 83 (463)
Q Consensus 29 s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---------~~--------------- 83 (463)
++..+.++=+..-+ +..+..++.+++.+++.|.+++-.....+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 45667777777777 667889999999999999999988777777777776653 11
Q ss_pred --------HHHHHHHHHHhhcccccccc-hhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCc-----
Q 012438 84 --------IYMLIFGRLLLGVGIGFGNQ-SVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGG----- 149 (463)
Q Consensus 84 --------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~----- 149 (463)
.|...+.-.+.-+-...... .-.....|.+..+|-.|..++++.+.+++..+++.+...+....+.
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~ 218 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEF 218 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHH
Confidence 02222222222222222222 3344567888889999999999999999999999887777653321
Q ss_pred --chhHHHHHhhHHHHHHHHHHhhc----CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCc
Q 012438 150 --WGWRISLAMAAAPASILTIGAIF----LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHP 223 (463)
Q Consensus 150 --~gwr~~f~~~~~~~~~~~~~~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (463)
..-+..+.+.+..++++..+..+ +++.|+..... ..++++++.+-.
T Consensus 219 ~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~----------------------------~~kk~~~k~k~~ 270 (509)
T COG3202 219 KDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRA----------------------------KKKKKKKKLKLG 270 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHH----------------------------hcccccccccCc
Confidence 01333444444444444444333 33444322111 011112223444
Q ss_pred hhhhhcccchhhHHHHHHHHHHHhhhhhhHHHh-hHHHHHHHcCCCCchhH--HHHHHHHHHH-HHHHHHHHHHHHhhcC
Q 012438 224 FKNIAQRKYRPQLVMAILIPFFQQVTGINIVGL-YSPVLFRTLKLGESTSL--LLSALVAGGM-GTVFAIVSMILADKFG 299 (463)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~g~l~d~~g 299 (463)
+.+-++...+.+.+..+.+...+.....+.+.. |-...-+.+....+... +......++. .++....++.+.+|.|
T Consensus 271 ~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~G 350 (509)
T COG3202 271 LIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVG 350 (509)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 555555555555555555555444444443322 22222111211111111 1223333333 5556667788888888
Q ss_pred CchhhhHhhHHHHHHHHHHH
Q 012438 300 RKVLFLVGGIQMLVSQVMIG 319 (463)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (463)
-.....+.-+.+.+..+++.
T Consensus 351 W~~~AlitPiv~litg~lFF 370 (509)
T COG3202 351 WFTGALITPLVMLITGVLFF 370 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77666655555555544443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0012 Score=65.50 Aligned_cols=156 Identities=15% Similarity=0.051 Sum_probs=94.9
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHH
Q 012438 261 LFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADK-FGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYL 339 (463)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (463)
+.+..+.+...+. .+........-+..+++|+++|+ +|+++.+.++.++..++..++.+... .. .........
T Consensus 14 l~~~lg~~~~~A~-~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~---~~--~~~~~~~~~ 87 (654)
T TIGR00926 14 FLNFLGFSESTST-VLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI---PS--SGHPLHDLL 87 (654)
T ss_pred HHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC---cc--cccchHHHH
Confidence 3445777777766 45555555667777888999996 79999999998888888766654210 00 000111222
Q ss_pred HHHHHHHHhhhhhccccceecccccccCCcc---cccchhHHHHHHHHHHHHHHHhhhhhhhhcc-------cchhHHHH
Q 012438 340 ILVMVCLYSSGYCYSWGPLAWLVPSEIFPLE---IRSAGQSITVAVNFLFTFLTAQTFLPMLCHF-------KAGIFFFF 409 (463)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~ 409 (463)
.+..+.+...+.+.. -|...+...|.++++ .+-..+.+.....++|+.+++.+.+.+.+.. ++...+..
T Consensus 88 ~l~gLaLia~G~Ggi-Kp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i 166 (654)
T TIGR00926 88 DLLGLALIALGTGGI-KPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGV 166 (654)
T ss_pred HHHHHHHHHhhcccc-ccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Confidence 334444444444433 344455556777643 4677888888899999999999998887543 24333444
Q ss_pred HHHHHHHHHHHHHh
Q 012438 410 GGLVLIMTTFMHFF 423 (463)
Q Consensus 410 ~~~~~~~~~~~~~~ 423 (463)
.+++.+++++++..
T Consensus 167 ~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 167 PAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00094 Score=64.92 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=109.6
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hcchhhhhHHHHHHHHHHHhhhhhh-------------------
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRA-LGRKVSILIGGVAFLAGSALGGSAF------------------- 82 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~------------------- 82 (463)
.+++|.+...+.-..+.+.-......+.+++++|- +||-+++.++.++..+|.++..++.
T Consensus 65 t~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c 144 (571)
T KOG1237|consen 65 TLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVC 144 (571)
T ss_pred HHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcc
Confidence 44557777777778888888888889999999996 6788999888888888765543321
Q ss_pred ------hHHHHHHHHHHhhcccccccchhhHHhhhcCC---CCc-c--cchhhhhhHHHHHHHHHHHHhhhhhcccCCcc
Q 012438 83 ------NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAP---PKY-R--GTFNIGFQLCGAIGVLSANLLNYGTQKIKGGW 150 (463)
Q Consensus 83 ------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~-r--~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 150 (463)
....+..+.-+..+|.|+.-+...++-+|-++ +++ + ...+.++....++|..++..+-.+..+ +.
T Consensus 145 ~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~---~~ 221 (571)
T KOG1237|consen 145 ESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD---NV 221 (571)
T ss_pred cCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhh---cc
Confidence 11366777788889999999999999999998 322 2 357888888899999998887554443 35
Q ss_pred hhHHHHHhhHHHHHHHHHHhh
Q 012438 151 GWRISLAMAAAPASILTIGAI 171 (463)
Q Consensus 151 gwr~~f~~~~~~~~~~~~~~~ 171 (463)
+|.+.|.+..+..++..++++
T Consensus 222 ~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 222 GWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred cceeeccHHHHHHHHHHHHHH
Confidence 799999887777666555544
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.2e-05 Score=51.45 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=42.2
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHH
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAF 71 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 71 (463)
+.|+|..|+|.+.++..+...++++++|.++||+|+++.++....+.
T Consensus 29 ~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 29 QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 45899999999999999999999999999999999998887766544
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0025 Score=54.04 Aligned_cols=58 Identities=16% Similarity=0.039 Sum_probs=38.7
Q ss_pred CcccchhhhhhHHHHHHHHHHHHhhhhhccc--CCcchhHHHHHhhHHHHHHHHHHhhcC
Q 012438 116 KYRGTFNIGFQLCGAIGVLSANLLNYGTQKI--KGGWGWRISLAMAAAPASILTIGAIFL 173 (463)
Q Consensus 116 ~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~--~~~~gwr~~f~~~~~~~~~~~~~~~~~ 173 (463)
++|+..+.+...+.++|.++.-..-..-.+. .....|++++.+.+++.++-+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888889999998876542111011 111369999999888877766665443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.002 Score=50.93 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=87.2
Q ss_pred hhhhHHHhhHHHHHHHcCCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHH
Q 012438 249 TGINIVGLYSPVLFRTLKLG-----ESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMA 323 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 323 (463)
.++..........+++.+.+ ....+..-..+......++.++.+.+.+++|.|+.+.++.+...+-......
T Consensus 10 taf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~--- 86 (156)
T PF05978_consen 10 TAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY--- 86 (156)
T ss_pred HHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---
Confidence 34444444444455443322 1223335556666777888889999999999999999888777654444322
Q ss_pred hhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhh
Q 012438 324 AQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLP 396 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 396 (463)
++.+..+....+.+.+.+..|.... .++.+...++.+++-.++.-.+.+.+.++|..+.-.
T Consensus 87 -----------~~~~~l~~~s~l~G~~~a~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 87 -----------PNSYTLYPASALLGFGAALLWTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred -----------hhHHHHHHHHHHHhhhhHHhhHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666677777776665543 444677788889998888888888777777655433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0026 Score=58.54 Aligned_cols=162 Identities=10% Similarity=0.026 Sum_probs=101.1
Q ss_pred HHHhhHHHHHHH--cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCC
Q 012438 253 IVGLYSPVLFRT--LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHG 330 (463)
Q Consensus 253 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (463)
....|+..|+.+ .+++..+..--+.-...=..++..+....+.|.++.|++++++.+...+...++.+.
T Consensus 21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--------- 91 (412)
T PF01770_consen 21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--------- 91 (412)
T ss_pred CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---------
Confidence 344444445433 677666555334444444556667777889999999999998888877776666553
Q ss_pred CCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc--chhHHH
Q 012438 331 GFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK--AGIFFF 408 (463)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~ 408 (463)
......-+.-++++...+.-. ..++++=...|+++--++.+......-+|.+++..++..+....+ +.....
T Consensus 92 ----~sv~~mq~~q~~yg~~~a~ev--ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~ 165 (412)
T PF01770_consen 92 ----TSVLAMQLMQFFYGLATAAEV--AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNY 165 (412)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHH--HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 334444555555555544322 222333345577888888888888888888888877766665443 333434
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 012438 409 FGGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~ 429 (463)
+......++++..+++|..++
T Consensus 166 isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 166 ISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 455555666666677776544
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0041 Score=57.06 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=83.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHH--HHHHHHH
Q 012438 268 GESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAY--LILVMVC 345 (463)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 345 (463)
+...+. +...++.+..++..+.+-|+.||+|-|....++.....++..+=..... +.-++..+ +....-.
T Consensus 77 s~~~~~-wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~-------p~v~~~f~~~l~~~Gq~ 148 (480)
T KOG2563|consen 77 SSSAAD-WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL-------PFVPPLFRRPLTHTGQS 148 (480)
T ss_pred chHHHH-HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC-------ccccccchhhhhHHhHH
Confidence 444444 8888999999999999999999999999999999888888766544310 10012223 2222222
Q ss_pred HHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 012438 346 LYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF 401 (463)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 401 (463)
+.....-.. ..+..-+..-.+|+++|+++..+..+.+.+|..++..+-..+..+.
T Consensus 149 iaa~Aq~Fi-m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 149 IAAAAQPFI-LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHhhhHh-hccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 222221111 1122233345689999999999999999999888887776666554
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.012 Score=55.85 Aligned_cols=114 Identities=9% Similarity=0.065 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCC----------cchh--------HHHHHHHHH
Q 012438 284 GTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGF----------SEGY--------AYLILVMVC 345 (463)
Q Consensus 284 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--------~~~~~~~~~ 345 (463)
.++..++.+++++|++|++.+............++.+.+.......++. +.+. .|. .....
T Consensus 57 ~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~-~~~FY 135 (472)
T TIGR00769 57 AVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWS-FALFY 135 (472)
T ss_pred HHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhh-HHHHH
Confidence 3444788899999999999888777766666666655543211111100 0000 111 11122
Q ss_pred HHhhhhhcccc-ceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhh
Q 012438 346 LYSSGYCYSWG-PLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPML 398 (463)
Q Consensus 346 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 398 (463)
+..-.++.... -+.|.+++|..+.++..+-.++....+++|..+++.+...+.
T Consensus 136 v~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 136 VMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222 367888899999999999999999999999999998887766
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.21 E-value=7.6e-05 Score=72.30 Aligned_cols=145 Identities=14% Similarity=-0.029 Sum_probs=1.0
Q ss_pred hHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCC--
Q 012438 252 NIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDH-- 329 (463)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 329 (463)
..+..-++++-+++++++.+.+ .+.+..-++.++..++..++.+|..|-+.+..+.++++++.+++.+--+..-...
T Consensus 20 g~~~~~lttiErRF~l~S~~~G-~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~ 98 (539)
T PF03137_consen 20 GYVNSSLTTIERRFGLSSSQSG-LISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE 98 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccc
Confidence 3334445556677888888888 8889999999999999999999988888888898998888887765432211000
Q ss_pred --C-----------------------------CCcchh----HHHHHHHHHHHhhhhhccccceecccccccCCcccccc
Q 012438 330 --G-----------------------------GFSEGY----AYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSA 374 (463)
Q Consensus 330 --~-----------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 374 (463)
. ...... .+++++..++.+.+.. ...++..+|+.|.++++..+.
T Consensus 99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~-pl~tLG~tYiDDnv~~~~spl 177 (539)
T PF03137_consen 99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGAT-PLYTLGITYIDDNVSKKNSPL 177 (539)
T ss_dssp -----------------------------------------------------SSS------------------------
T ss_pred cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhcccc-CCccceeeeeccccccccCcc
Confidence 0 000111 1222222333333322 235677889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhh
Q 012438 375 GQSITVAVNFLFTFLTAQTFLPML 398 (463)
Q Consensus 375 ~~g~~~~~~~~g~~~~~~~~~~~~ 398 (463)
..|+......+|-.+|-.+.+...
T Consensus 178 YiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 178 YIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ------------------------
T ss_pred chhhhhHHhhccHHHHHHHHHHHH
Confidence 999999998888877766666544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.026 Score=52.92 Aligned_cols=184 Identities=12% Similarity=0.035 Sum_probs=91.8
Q ss_pred HHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHH
Q 012438 241 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGS 320 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 320 (463)
....+....+.-.+.+-.+.++.+...+.-.........-.+..++.+...|...||..|.+....+.+..-++...-..
T Consensus 8 y~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~ 87 (432)
T PF06963_consen 8 YLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCA 87 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHH
Confidence 34444444555666677777777664433322225556666777888888899999999988877666554433333222
Q ss_pred HHHhhhCCCCCC--cchhHHHHHHHHHHHhhhhhccccceeccc----ccccC--CcccccchhHHHHHHHHHHHHHHHh
Q 012438 321 IMAAQLGDHGGF--SEGYAYLILVMVCLYSSGYCYSWGPLAWLV----PSEIF--PLEIRSAGQSITVAVNFLFTFLTAQ 392 (463)
Q Consensus 321 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--p~~~~~~~~g~~~~~~~~g~~~~~~ 392 (463)
............ +.......+....+++.............+ +..+. +++.....++...-+-.+...++|.
T Consensus 88 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl 167 (432)
T PF06963_consen 88 LFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPL 167 (432)
T ss_pred HHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 211111111100 011122222222222221111111111111 11112 3344555556556566778999999
Q ss_pred hhhhhhhcccchhH-HHHHHHHHHHHHHHHHhc
Q 012438 393 TFLPMLCHFKAGIF-FFFGGLVLIMTTFMHFFL 424 (463)
Q Consensus 393 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 424 (463)
+.|.+.+..+.... .+.++..++...+=++++
T Consensus 168 ~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 168 FVGLLMTFASPVIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887764433 333444444433334433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.001 Score=63.03 Aligned_cols=151 Identities=11% Similarity=0.056 Sum_probs=111.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh----------hhHHHHHHHHHHhhc
Q 012438 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA----------FNIYMLIFGRLLLGV 96 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~l~~~r~l~G~ 96 (463)
|+|+...|.+..+..++..+|..+.....-+..-|+++..+.++..+.++.-..- ++.+..+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 3799999999988899999999999888888888999988888877766643221 222333344456666
Q ss_pred ccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCc-----chhHHHHHhhHHHHHHHHHHhh
Q 012438 97 GIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGG-----WGWRISLAMAAAPASILTIGAI 171 (463)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----~gwr~~f~~~~~~~~~~~~~~~ 171 (463)
..+..+.+...+++|..|+..-|...++.....++|..++..++..+.+..+. .+-.+..++..+..++.+.+..
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 66667778888999999999999999999999999999999988877654331 1233445555666655555565
Q ss_pred cCCCCh
Q 012438 172 FLPETP 177 (463)
Q Consensus 172 ~~~e~~ 177 (463)
++|+..
T Consensus 411 lLp~~~ 416 (433)
T PF03092_consen 411 LLPPQK 416 (433)
T ss_pred HcCCCc
Confidence 677654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.011 Score=58.41 Aligned_cols=193 Identities=13% Similarity=0.057 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHH
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQV 316 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 316 (463)
+.++.+..+.+......+..-+..+=+.++.++.+.+ .+...+-++..+......+...|..|-+++-++.++++++.+
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG-~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSG-LIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcce-eEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 3333444444333333333333444456788877766 778888888888889999999999999999999999999888
Q ss_pred HHHHHHHhhh-----------CCCC----------------------CC----cch-hHHHHHHHH-HHHhhhhhccccc
Q 012438 317 MIGSIMAAQL-----------GDHG----------------------GF----SEG-YAYLILVMV-CLYSSGYCYSWGP 357 (463)
Q Consensus 317 ~~~~~~~~~~-----------~~~~----------------------~~----~~~-~~~~~~~~~-~~~~~~~~~~~~~ 357 (463)
+..+.-+..- +... +. ..+ ..+..+.+. .+.+.+ .....+
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG-~Tpi~t 256 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG-ATPIFT 256 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC-CCCCcc
Confidence 8775422110 0000 00 111 122222222 222332 223456
Q ss_pred eecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc------------------c-chhHHHHHHHHHHHHH
Q 012438 358 LAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF------------------K-AGIFFFFGGLVLIMTT 418 (463)
Q Consensus 358 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~ 418 (463)
+...|+.|...++......|+...+..+|-++|-.+++.....+ | |+.-+++++...+...
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 77888889999899999999999998888887777766554321 1 2333344444455555
Q ss_pred HHHHhcCCCCCCC
Q 012438 419 FMHFFLPETKNVP 431 (463)
Q Consensus 419 ~~~~~~~~~~~~~ 431 (463)
+.+++.|++.++.
T Consensus 337 ~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 337 VPLFFFPKELPKS 349 (735)
T ss_pred HHHHhCcccCccc
Confidence 5666777665544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.14 Score=47.05 Aligned_cols=93 Identities=14% Similarity=0.030 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCc--chhHHHHHhh
Q 012438 82 FNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGG--WGWRISLAMA 159 (463)
Q Consensus 82 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~--~gwr~~f~~~ 159 (463)
..++..++.-.+.|++.|......+...++. |++.- ..+..|.+++..+...+........++ .+=-.-|.+.
T Consensus 115 ~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~yt----qavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s 189 (406)
T KOG1479|consen 115 GFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYT----QAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITS 189 (406)
T ss_pred hhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHH----HHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHH
Confidence 4567777788889999888888777766655 43433 233344444444444333222221111 1222344455
Q ss_pred HHHHHHHHHHhhcCCCChHH
Q 012438 160 AAPASILTIGAIFLPETPNS 179 (463)
Q Consensus 160 ~~~~~~~~~~~~~~~e~~~~ 179 (463)
.+..+++.+....+|..|-.
T Consensus 190 ~~~~llC~i~y~~l~~lpf~ 209 (406)
T KOG1479|consen 190 TVILLLCFVLYLVLPKLPFV 209 (406)
T ss_pred HHHHHHHHHHHHHhhcchHH
Confidence 55555555555567777643
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.025 Score=39.17 Aligned_cols=69 Identities=14% Similarity=-0.051 Sum_probs=58.9
Q ss_pred hHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHH
Q 012438 252 NIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSI 321 (463)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (463)
+.+...+|...++.+++..+.+ ++.+...++.++|++...++.++.++++.+..+.+...+....+.+.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag-~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAG-WLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555678999999999988888 99999999999999999999999888888888888888777777664
|
Note that many members are hypothetical proteins. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.00045 Score=62.28 Aligned_cols=114 Identities=9% Similarity=-0.046 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCC---CCCcchhHHHHHHHHHHHhhhhh
Q 012438 276 SALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDH---GGFSEGYAYLILVMVCLYSSGYC 352 (463)
Q Consensus 276 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 352 (463)
....+.++..+|+.+..+..-+..+++.+.+..+.-.+. +.+++.+..... .+..-++.+..++.+.+++...+
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~f---iPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG 263 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLF---IPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHH---HHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc
Confidence 456778889999988876432211233333222222211 111111111100 01111233444444555554444
Q ss_pred ccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhh
Q 012438 353 YSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQT 393 (463)
Q Consensus 353 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 393 (463)
.. ..+...+..+..+++.|..+-.+...+-.+|-.+|..+
T Consensus 264 yl-~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 264 YL-STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ----HHHH---------------------------------
T ss_pred hh-hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 34555666788888888777777666666666665544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0035 Score=57.57 Aligned_cols=159 Identities=16% Similarity=0.087 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCchhhhHhhH
Q 012438 234 PQLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADK----FGRKVLFLVGGI 309 (463)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~~~ 309 (463)
++.+....+....++ +...-..|.+.++++.|....... .+....-+.+++..++.|..+|| +||||..+....
T Consensus 32 ~~li~v~~ia~Gvqf-~wA~elsy~tPyl~~lGvphk~~S-~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s 109 (498)
T KOG0637|consen 32 RKLISVASIAAGVQF-GWALELSYLTPYLQSLGVPHKWSS-IIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGS 109 (498)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhccccHHHHHcCCCccccc-ccccccccccceecccccccccccccccccccchHHHhh
Confidence 344444455555553 456667888999999999988777 66666677788888999999996 688877665544
Q ss_pred H-HHHHHHHHHHHHHhhhCCCCCCcc----hhHHHHHHHHHHHhhhhhccccceecccccccCCcccccc-hhHHHHHHH
Q 012438 310 Q-MLVSQVMIGSIMAAQLGDHGGFSE----GYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSA-GQSITVAVN 383 (463)
Q Consensus 310 ~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~ 383 (463)
. ..++++++.+.-.......++... ......++.+.+.-+.......|. -++..|+..++.+.+ +++....+.
T Consensus 110 ~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~ 188 (498)
T KOG0637|consen 110 LLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFM 188 (498)
T ss_pred HHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHH
Confidence 4 444455444433222211111111 122223333333333333333333 345567777666666 999999888
Q ss_pred HHHHHHHHhhhh
Q 012438 384 FLFTFLTAQTFL 395 (463)
Q Consensus 384 ~~g~~~~~~~~~ 395 (463)
.+|+.++-.+.+
T Consensus 189 avGnvLGY~~g~ 200 (498)
T KOG0637|consen 189 AVGNVLGYALGS 200 (498)
T ss_pred Hhcceeeeeccc
Confidence 888887766554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.32 Score=44.79 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=78.6
Q ss_pred HHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHH
Q 012438 240 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIG 319 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 319 (463)
+++.........+.+.+-.+++.+..-..+. +. .+.......+.+..++.-.+--+...|....++..+..+..++..
T Consensus 23 ~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~-~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~ 100 (406)
T KOG1479|consen 23 FLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SK-NFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIV 100 (406)
T ss_pred HHHHhcccccchHhhhccHHHHHhhcCCCch-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344566666666777666544444 22 455555555555555555544444333332333333333222222
Q ss_pred HHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhh
Q 012438 320 SIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLC 399 (463)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 399 (463)
........ .........+..++....+..+.+.. ....+-. ...+|+++....++=.+.++.+.+... .+.....+
T Consensus 101 ~l~~~~v~-~~~~~~~ff~vt~~~vv~~~~a~a~~-qgs~~G~-a~~~P~~ytqavm~G~a~aG~l~Sl~~-i~tka~~~ 176 (406)
T KOG1479|consen 101 TLDLALVK-TDTWTNGFFLVTLIIVVLLNLANAVV-QGSLYGL-AGLFPSEYTQAVMSGQALAGTLTSLLR-ILTKAAFS 176 (406)
T ss_pred HHHHHhhc-cCCccchhHHHHHHHHHHHhhhhhhh-ccchhhh-hhcCCHHHHHHHHhcchhHhHHHHHHH-HHHHHhcC
Confidence 22111111 11111222333344444444443333 2233344 355687776655544444443333222 22222222
Q ss_pred cc--cchhHHHHHHHHHHHHHHHHHhcCC
Q 012438 400 HF--KAGIFFFFGGLVLIMTTFMHFFLPE 426 (463)
Q Consensus 400 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (463)
.. +...++..+.+..+.+++++...++
T Consensus 177 ~~~~sA~~yF~~s~~~~llC~i~y~~l~~ 205 (406)
T KOG1479|consen 177 DSRTSALIYFITSTVILLLCFVLYLVLPK 205 (406)
T ss_pred CCCceeehhHHHHHHHHHHHHHHHHHhhc
Confidence 22 2344555666666666666665544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.082 Score=49.77 Aligned_cols=101 Identities=22% Similarity=0.274 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHhhhh---hhcchhhhhHHHHHHHHHHHhhhhh------------------hhHHHHHHHHHHhhc
Q 012438 38 SSLYITGILGSLIASSVTR---ALGRKVSILIGGVAFLAGSALGGSA------------------FNIYMLIFGRLLLGV 96 (463)
Q Consensus 38 s~~~~~~~i~~~~~g~l~d---r~Grr~~~~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r~l~G~ 96 (463)
-...+|..+++.+.+.+.+ ++||++.+.++..+..++.++.-.+ +++...++.-+++|+
T Consensus 286 ~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~ 365 (461)
T KOG3098|consen 286 IGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF 365 (461)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh
Confidence 3344555666666777775 5899999999999888888776543 346677788899999
Q ss_pred ccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHh
Q 012438 97 GIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLL 139 (463)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 139 (463)
+-+......+.++.+.+ +++|..+.++.-.-..++..++...
T Consensus 366 ~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 366 GDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999 5888888888887777777665544
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.034 Score=51.26 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=85.1
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHH-----HHHHHHhhhhhhhHHHHHHHHHHhhccccc
Q 012438 26 CKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVA-----FLAGSALGGSAFNIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 26 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~-----~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (463)
+.-..++..+...+|.+|..++.--...+ |+ |+..+.+.+- ..+.....-+.++.|.+++.-+..|+..|.
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 34456788888888888877764432222 33 3333332221 122223334558899999999999999999
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhc
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQ 144 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~ 144 (463)
.+..+...+.|-.++++|...++....+-++|..++..++..+.
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986553
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.16 Score=49.44 Aligned_cols=117 Identities=13% Similarity=-0.004 Sum_probs=68.5
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhH-HHHHHH-HHHHhh----hhhhhH-HHHHHHHHHhhccc
Q 012438 26 CKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILI-GGVAFL-AGSALG----GSAFNI-YMLIFGRLLLGVGI 98 (463)
Q Consensus 26 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~-i~~~~~----~~~~~~-~~l~~~r~l~G~~~ 98 (463)
+|-+..+.+.+.+++..|.++|+.+++++.++--|+....- ...+.+ ++..+. ++...+ ..++..-++.|+..
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999999999999988754333322111 111111 111111 111111 22333445667777
Q ss_pred ccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhh
Q 012438 99 GFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGT 143 (463)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 143 (463)
|+..|....+..+... ++-++..+-......+|.++|.++.+++
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 8888777776655332 2345566777777777777777775544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.15 Score=45.68 Aligned_cols=135 Identities=19% Similarity=0.156 Sum_probs=81.1
Q ss_pred HHHhhHHHHHHHcCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCC
Q 012438 253 IVGLYSPVLFRTLKLGES--TSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHG 330 (463)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (463)
......+.+..+.+.... ... .......+...++.++.|.+.||.|||+.+..+......+.+...+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------- 90 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYG-LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP-------- 90 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHH-HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc--------
Confidence 334455556666555543 333 677777778888889999999999999776666654333322222210
Q ss_pred CCcchhHHHHHHHHHHHhhhhhccccceecccccccCCc-ccccchhHHHHH-HHHHHHHHHHhhhhhhhhc
Q 012438 331 GFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPL-EIRSAGQSITVA-VNFLFTFLTAQTFLPMLCH 400 (463)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~~~~~~~ 400 (463)
....+.........+.+.+ ...+....+..|..|+ +.|+...+.... ...++..+++.+.+.+...
T Consensus 91 ---~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 91 ---NVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred ---cchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112222322222233322 2345666777888887 578888888888 5777778888666666554
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.014 Score=50.67 Aligned_cols=133 Identities=11% Similarity=0.009 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHHhhhcC
Q 012438 34 TTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMA 113 (463)
Q Consensus 34 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 113 (463)
|.+.-.-.+-..+-.+....+.||+---+-..+..++.+.+.++.+++++.++=+++-.+..++.|.......++-+ .+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~Y 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-RY 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-cC
Confidence 33444445555666666777888865544456667788889999999999999999999998988877766555433 33
Q ss_pred CCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc
Q 012438 114 PPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF 172 (463)
Q Consensus 114 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 172 (463)
+ ....+.+..+.+.+.++|..--.++.+..+ .+-|...++...+.++.+...++
T Consensus 144 ~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~-~spk~Tlli~l~lP~lfa~~yf~ 197 (409)
T KOG3880|consen 144 P----SIVIAGWSSGTGGAGLIGASSYAFLTSWAN-LSPKSTLLIMLFLPALFAFAYFF 197 (409)
T ss_pred C----CceeccccCCCCcchhhhhhHHHHHhhhcC-CChhhHHHHHHHHHHHHHHHHHh
Confidence 3 234555666666666666654444444222 45677777766666665555555
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.7 Score=42.42 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=32.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhhhh-ccc-chhHHHHHHHHHHHHHHH
Q 012438 372 RSAGQSITVAVNFLFTFLTAQTFLPMLC-HFK-AGIFFFFGGLVLIMTTFM 420 (463)
Q Consensus 372 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 420 (463)
.+...|-.+..+.+|+++|+.+.+.+.- ..| ....+..+.+.++++++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4566788888899999999988887664 455 334444444444444433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.25 Score=46.58 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=33.6
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHH--cCCCCchhH--HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHh
Q 012438 242 IPFFQQVTGINIVGLYSPVLFRT--LKLGESTSL--LLSALVAGGMGTVFAIVSMILADKFGRKVLFLVG 307 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 307 (463)
+.++.+.........-.|.++++ .+.+-.+.+ .+..-++++=-+-+.++=...++|+||||..++-
T Consensus 7 ~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 7 LLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred HHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhH
Confidence 33444444433333456777776 344433322 1222334444444455555667789999876543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.21 Score=46.64 Aligned_cols=119 Identities=10% Similarity=-0.034 Sum_probs=76.0
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcc---cccchhHH
Q 012438 302 VLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLE---IRSAGQSI 378 (463)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~ 378 (463)
|++.++.++..++.+++......... .+........+.+.+...+.+.. -|....+..|.++++ .|...+..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~----~~~~~~~~~~~gL~lia~G~G~~-K~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL----PSGIQLGLFYIGLALIAVGTGGI-KPNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC----------CHHHHHHHHHHHHHHCC-HHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh----hhhHHHHHHHHHHHHHHhccccc-cccHHHHHHHHhcccchhhhhhhHHH
Confidence 45667777777777775554321100 01122344555555555555433 455555557777654 56677788
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcC
Q 012438 379 TVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFFLP 425 (463)
Q Consensus 379 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (463)
.+...++|+.+++...+++.++.++...+....++.+++++.+...+
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999988888888888777777666554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.34 E-value=1 Score=43.25 Aligned_cols=117 Identities=14% Similarity=0.101 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCc----------chhHHHH-------HHHHH
Q 012438 283 MGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFS----------EGYAYLI-------LVMVC 345 (463)
Q Consensus 283 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-------~~~~~ 345 (463)
+.++...+..++++++++.++.............++++.+.......++.. ....+.. .....
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 445666778899999999998877776666666666665432211111110 0111110 01111
Q ss_pred HHhhhhhcc-ccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhh
Q 012438 346 LYSSGYCYS-WGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLC 399 (463)
Q Consensus 346 ~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 399 (463)
+..-.++.. .+-+.|.+++|..+.++..+-.++....+++|..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 122458888999999999999999999999999999988887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.92 E-value=6.8 Score=38.74 Aligned_cols=163 Identities=12% Similarity=0.031 Sum_probs=93.9
Q ss_pred hhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhHhhHHHHHHHHHHHHHHHhhhCCC-----
Q 012438 256 LYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADK-FGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDH----- 329 (463)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 329 (463)
....++...++.+...+. ..............+++++++|. +||.+++.++..+..++..++........-..
T Consensus 59 nlv~ylt~~~~~~~~~aa-~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 59 NLVTYLTLELHASGGGAA-NNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred HHHHHHHHHhccchHHHH-HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 334444455666665555 55566666777888899999997 58989999988888888777665544332110
Q ss_pred -----CCCcchhHH--HHHHHHHHHhhhhhccccceecccccccCC----cccc--cchhHHHHHHHHHHHHHHHhhhhh
Q 012438 330 -----GGFSEGYAY--LILVMVCLYSSGYCYSWGPLAWLVPSEIFP----LEIR--SAGQSITVAVNFLFTFLTAQTFLP 396 (463)
Q Consensus 330 -----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~--~~~~g~~~~~~~~g~~~~~~~~~~ 396 (463)
......... .....+.+...+. .+.-|.......|-++ .+.+ ..-+.......++|..++..+.-+
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~-gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGA-GGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheecc-CCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 001111111 2222222222222 2334555556566666 2222 366677777788888888888877
Q ss_pred hhhcccchhHHHHHHHHHHHHHHH
Q 012438 397 MLCHFKAGIFFFFGGLVLIMTTFM 420 (463)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~ 420 (463)
+.+..+|..-+-...++.+.++++
T Consensus 217 iq~~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred hhhcccceeeccHHHHHHHHHHHH
Confidence 777777654443333333333333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.28 E-value=3.2 Score=38.03 Aligned_cols=153 Identities=13% Similarity=0.168 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-----hcCCchhhhHh-hHHH
Q 012438 238 MAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILAD-----KFGRKVLFLVG-GIQM 311 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~g~~~~~~~~-~~~~ 311 (463)
..+...+..+........ -.|.+++..+.+-...+ ...... --.---++...++| |+||||..++- ..+.
T Consensus 34 llLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a-~fS~ay--~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ll 109 (510)
T KOG3574|consen 34 LLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQA-IFSFAY--WPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLL 109 (510)
T ss_pred HHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhh-hhhhhh--hHHHHHHHHHhhhHHHHHHhhccccceeeehHHHH
Confidence 334444555555554444 78999886666554443 222111 11222345555666 99998865432 2333
Q ss_pred HHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHH
Q 012438 312 LVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTA 391 (463)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 391 (463)
+..+..+.....-..+.++. .++.......+.+..+..+ ..-...-...-.+..++..|-+..........|.+++.
T Consensus 110 G~~mllLs~~v~~~~g~ng~--~p~v~~lt~~f~LLnflaA-tQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~ 186 (510)
T KOG3574|consen 110 GLFMLLLSYLVDRGLGGNGG--LPNVVALTLLFLLLNFLAA-TQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN 186 (510)
T ss_pred HHHHHHHhhCCCcccccCCC--CcchHHHHHHHHHHHHHHh-hhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence 33333322221111111111 1111111111111111111 11111111222455667777776666666677777776
Q ss_pred hhhhhh
Q 012438 392 QTFLPM 397 (463)
Q Consensus 392 ~~~~~~ 397 (463)
.++-.+
T Consensus 187 ~ifLaL 192 (510)
T KOG3574|consen 187 VVFLAL 192 (510)
T ss_pred ceeeEe
Confidence 665443
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.02 E-value=3.7 Score=34.95 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=17.8
Q ss_pred HHHHHHHhhcCCchhhhHhhHHHHHH
Q 012438 289 IVSMILADKFGRKVLFLVGGIQMLVS 314 (463)
Q Consensus 289 ~~~g~l~d~~g~~~~~~~~~~~~~~~ 314 (463)
+-+-+++.|+..|++.+.+.++..+.
T Consensus 258 igGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 258 IGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred hhhHHHhhhheeEEEEEecchhHHHH
Confidence 33346788898888877776666544
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.12 Score=44.36 Aligned_cols=59 Identities=25% Similarity=0.247 Sum_probs=38.1
Q ss_pred hhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHH
Q 012438 256 LYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQ 315 (463)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 315 (463)
.|.-++.+++++...+.+ .+........++...+.|.+.||.|||+..+.-.+...+++
T Consensus 58 PYvYyLYstYgFgkG~Ig-qLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC 116 (454)
T KOG4332|consen 58 PYVYYLYSTYGFGKGDIG-QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC 116 (454)
T ss_pred ceeeeeehhcCccCCccc-eeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence 344444567777777666 44444444556667778899999999987665544444433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=92.42 E-value=2.7 Score=40.06 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhhhHh
Q 012438 278 LVAGGMGTVFAIVSMILADKFGRKVLFLVG 307 (463)
Q Consensus 278 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 307 (463)
....+..++..+....+..|+..|.-+..+
T Consensus 52 ~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~ 81 (437)
T TIGR00939 52 LASQLPSLLFNSLNLFLIFRIPVTVRLLGG 81 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccchhHHH
Confidence 344444555555555666666554333333
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.12 E-value=8.6 Score=34.53 Aligned_cols=73 Identities=22% Similarity=0.232 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHHhhhcCC
Q 012438 41 YITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAP 114 (463)
Q Consensus 41 ~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 114 (463)
++..+..+++.+.+.+++|-|..+.++...+... +..-+=+.+..++-.-...|++.+..+..--+|+++.-.
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 4455566777779999999999999988887653 333344788899999999999999999887777766543
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.23 Score=44.80 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=27.0
Q ss_pred ccccccCCcccccchhHHHHHHHHHHHHHHHhh
Q 012438 361 LVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQT 393 (463)
Q Consensus 361 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 393 (463)
-+..|..|++.|..+.|+.|........+--.+
T Consensus 409 qimQe~VpEseR~vv~gvqnsL~~~ldll~~il 441 (503)
T KOG2601|consen 409 QIMQETVPESERCVVFGVQNSLNSALDLLKDIL 441 (503)
T ss_pred HHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhE
Confidence 344899999999999999999998877665544
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.06 E-value=15 Score=35.12 Aligned_cols=117 Identities=11% Similarity=0.001 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCC-----------cch--------hHHHHHHH
Q 012438 283 MGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGF-----------SEG--------YAYLILVM 343 (463)
Q Consensus 283 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--------~~~~~~~~ 343 (463)
++++..++..++.+++.+.+.............+++++.........++. +.. +.|... .
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s-~ 152 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYS-L 152 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHH-H
Confidence 55677777888899988888887776666666666666544222111111 000 001111 1
Q ss_pred HHHHhhhhh-ccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhc
Q 012438 344 VCLYSSGYC-YSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCH 400 (463)
Q Consensus 344 ~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 400 (463)
..++.=..+ ...+-+.|..++|....++..+-.++.+...+++..++..+..++.++
T Consensus 153 ~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 153 FYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 111111111 111225566778999999999999999999999999999888877664
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.08 E-value=6.5 Score=35.97 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=40.2
Q ss_pred hhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHH
Q 012438 250 GINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVM 317 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 317 (463)
+.-...+-...++..++.++-......-.+-+....+...+.|...|+..|+|++.....+.-++.++
T Consensus 42 gdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v 109 (503)
T KOG2601|consen 42 GDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV 109 (503)
T ss_pred hHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence 34444445555666665544332224444555556666677788899999998876665554444333
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.84 E-value=1.6 Score=38.48 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhh
Q 012438 67 GGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGT 143 (463)
Q Consensus 67 ~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 143 (463)
-.+++.+...+..+.+++|..++.-+.-|+-.|..+....--+.+-.++++|-.+++....+-++|..++..++..+
T Consensus 325 vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 325 VNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 34455556666778899999999999999988999888888888888899999999999999999999999887544
|
|
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=81.86 E-value=6.6 Score=36.80 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 012438 282 GMGTVFAIVSMILADKFG 299 (463)
Q Consensus 282 ~~~~~~~~~~g~l~d~~g 299 (463)
+..++.....|++..|.+
T Consensus 6 i~~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 6 ILPIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344455555666666653
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 463 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-29 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 463 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 8e-04 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 30 SQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAG-SALGGSAFNIYMLI 88
+ +F +Y +LG IA G+ +IL + + G + L ++
Sbjct: 57 KDVFHSFVIGVYFFPLLGGWIADRF---FGKYNTILWLSLIYCVGHAFLAIFEHSVQGFY 113
Query: 89 FGRLLLGVGIGF 100
G L+ +G G
Sbjct: 114 TGLFLIALGSGG 125
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 463 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.98 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.45 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.41 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.36 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.35 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.32 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.26 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.06 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-46 Score=360.08 Aligned_cols=403 Identities=25% Similarity=0.459 Sum_probs=320.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhh------------------hhhhHHHHH
Q 012438 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGG------------------SAFNIYMLI 88 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~ 88 (463)
+.++.+.|++.+++.+|..+|++++|+++||+|||++++++.+++.+++++++ +++|++.++
T Consensus 51 ~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 44667889999999999999999999999999999999999999999999998 478999999
Q ss_pred HHHHHhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCC-----cchhHHHHHhhHHHH
Q 012438 89 FGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKG-----GWGWRISLAMAAAPA 163 (463)
Q Consensus 89 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~~gwr~~f~~~~~~~ 163 (463)
++|+++|+|.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++.......+ ..+||+.+.+..++.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999988876654322 357999999999999
Q ss_pred HHHHHHhhcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHH
Q 012438 164 SILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIP 243 (463)
Q Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (463)
++..+..+++||+|+|+..+++ .+++++.+++.+..+..+++..+..+....+++.... .. ....++........
T Consensus 211 ~~~~~~~~~~peSp~~L~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~ 285 (491)
T 4gc0_A 211 LLFLMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGR-LL---MFGVGVIVIGVMLS 285 (491)
T ss_dssp HHHHHHGGGSCCCHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH-HH---HSCCTHHHHHHHHH
T ss_pred hhhhhhhhcCCCChHHHHHcCc-hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhH-HH---HhcccHHHHHHHHH
Confidence 9988888999999999999888 7777777777765544433333332222222211111 11 12234455556666
Q ss_pred HHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHH
Q 012438 244 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMA 323 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 323 (463)
.+....+.+.+..|.+.+.+..+.+..... ......++..+++.++++++.||+|||+.+..+...+.++.+.+.....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 677777888888999999988887776666 6777788899999999999999999999999888888887776655432
Q ss_pred hhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc--
Q 012438 324 AQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF-- 401 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-- 401 (463)
. ....+..+....++..++..++.++.+.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+..
T Consensus 365 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~ 435 (491)
T 4gc0_A 365 T---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL 435 (491)
T ss_dssp T---------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred c---------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12234445555566666677777888899999999999999999999999999999998887765432
Q ss_pred ----c-chhHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCcc
Q 012438 402 ----K-AGIFFFFGGLVLIMTTFMHFFLPETKNVPIEQMDKVWREHWF 444 (463)
Q Consensus 402 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (463)
+ ...++++++++++..++.++++||||++++||+|+.++++.+
T Consensus 436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 2 345677788888888888899999999999999988765443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-38 Score=299.03 Aligned_cols=370 Identities=15% Similarity=0.046 Sum_probs=269.0
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhh----hhhHHHHHHHHHHhh
Q 012438 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGS----AFNIYMLIFGRLLLG 95 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----~~~~~~l~~~r~l~G 95 (463)
+.+.+++ .+..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++ +++++.++++|+++|
T Consensus 52 ~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 130 (451)
T 1pw4_A 52 PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG 130 (451)
T ss_dssp HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHH
T ss_pred HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence 3456777 89999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcch-hHHHHHhhHHHHHHHHHHh-hcC
Q 012438 96 VGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWG-WRISLAMAAAPASILTIGA-IFL 173 (463)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g-wr~~f~~~~~~~~~~~~~~-~~~ 173 (463)
++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+. .| ||+.|++.++++++..+.. +++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 131 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999998765432 46 9999999998887766555 458
Q ss_pred CCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhh-hcccchhhHHHHHHHHHHHhhhhhh
Q 012438 174 PETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNI-AQRKYRPQLVMAILIPFFQQVTGIN 252 (463)
Q Consensus 174 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (463)
||+|++...+++++.+. . .+. +. ++ +++.+.+.++. .+...+++.++...+..+.......
T Consensus 208 ~~~~~~~~~~~~~~~~~---------~--~~~---~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
T 1pw4_A 208 RDTPQSCGLPPIEEYKN---------D--YPD---DY-NE---KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY 269 (451)
T ss_dssp CCSSTTTCCCSCTTTCC---------C----------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHhhcCCCChhhhcc---------c--ccc---cc-hh---hhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 88875432111100000 0 000 00 00 00011112221 1222333444445555555556677
Q ss_pred HHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc--CCchhhhHhhHHHH-HHHHHHHHHHHhhhCC
Q 012438 253 IVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKF--GRKVLFLVGGIQML-VSQVMIGSIMAAQLGD 328 (463)
Q Consensus 253 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 328 (463)
....+.|.++++ .+.+....+ .......++.+++.++.+++.||+ +||+.+..+..+.. ++.+.+...
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 341 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN------- 341 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-------
T ss_pred HHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-------
Confidence 788899999887 677776666 788888999999999999999999 99988777665555 333322211
Q ss_pred CCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHH-HHHHHHhhhhhhhhcccchhHH
Q 012438 329 HGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFL-FTFLTAQTFLPMLCHFKAGIFF 407 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 407 (463)
+..+.+.......+.+.+.... .+....+..|.+|++.|+++.|+.+...++ |..++|.+.+.+.+..++...+
T Consensus 342 ----~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 416 (451)
T 1pw4_A 342 ----PAGNPTVDMICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 416 (451)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred ----cccCHHHHHHHHHHHHHHHhch-HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 1112333444444444433322 344456778999999999999999999999 9999999999999998866655
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012438 408 FFGGLVLIMTTFMHFFL 424 (463)
Q Consensus 408 ~~~~~~~~~~~~~~~~~ 424 (463)
...+++.+++.+.....
T Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 417 MVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555544444444443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=280.05 Aligned_cols=346 Identities=10% Similarity=0.058 Sum_probs=258.2
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhh---hhhhhHHHHHHHHHHhhcc
Q 012438 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALG---GSAFNIYMLIFGRLLLGVG 97 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~ 97 (463)
.+++++|++..+.+++.+.+.+++.++++++|+++||+|||++++.+.++.+++.+++ +++++++.++++|+++|++
T Consensus 51 ~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 130 (438)
T 3o7q_A 51 QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAG 130 (438)
T ss_dssp HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhh
Confidence 3567789999999999999999999999999999999999999999999999999999 8889999999999999999
Q ss_pred cccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhc-ccCCc----------------------chhHH
Q 012438 98 IGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQ-KIKGG----------------------WGWRI 154 (463)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~----------------------~gwr~ 154 (463)
.+...+...+++.|++|+++|++++++.+.+.++|.++++.++..+. ...+. .+||+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 210 (438)
T 3o7q_A 131 LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQT 210 (438)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999988876 43321 01999
Q ss_pred HHHhhHHHHHHHHHHhhc--CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccc
Q 012438 155 SLAMAAAPASILTIGAIF--LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKY 232 (463)
Q Consensus 155 ~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (463)
.|++.++..++..+..++ .||+++...++++ +++.+.+++++++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~- 258 (438)
T 3o7q_A 211 PYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-------------------------------QGSFSASLSRLARIR- 258 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-------------------------------TTSHHHHHHHHTTCS-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccccc-------------------------------ccchhhhHHHHHhCh-
Confidence 998877776665555443 5665421000000 001112233333322
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHhhHHHH-HHHc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHH
Q 012438 233 RPQLVMAILIPFFQQVTGINIVGLYSPVL-FRTL-KLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQ 310 (463)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 310 (463)
.++...+..+...........+.|.+ +++. +.+....+ .......++.+++.++.+++.||++||+.+..+..+
T Consensus 259 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~ 334 (438)
T 3o7q_A 259 ---HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI 334 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 23333344444445566777888888 8776 77777666 788888899999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHH
Q 012438 311 MLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLT 390 (463)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 390 (463)
..++.+++... +..+. .....+.+.+.+.. .|..+.+..|.+|++ ++.+.++.. .+.+++.++
T Consensus 335 ~~~~~~~~~~~-------------~~~~~-~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~ 397 (438)
T 3o7q_A 335 AMALCLISAFA-------------GGHVG-LIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIV 397 (438)
T ss_dssp HHHHHHHHHHC-------------CHHHH-HHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHH
T ss_pred HHHHHHHHHHc-------------CCcHH-HHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHH
Confidence 77666554432 11222 22333444444333 456667767888866 888888877 677999999
Q ss_pred Hhhhhhhhhccc-chhHHHHHHHHHHHHHH
Q 012438 391 AQTFLPMLCHFK-AGIFFFFGGLVLIMTTF 419 (463)
Q Consensus 391 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 419 (463)
|.+.|.+.+..+ +...+...+++.+...+
T Consensus 398 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 398 TPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999999987 65555554444444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=263.26 Aligned_cols=392 Identities=14% Similarity=0.080 Sum_probs=251.2
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 012438 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRA-LGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 101 (463)
++|+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cchhhHHhhhcCCCCc--ccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcC-CCChH
Q 012438 102 NQSVPLYLSEMAPPKY--RGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFL-PETPN 178 (463)
Q Consensus 102 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~-~e~~~ 178 (463)
.+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+. .|||+.|++.++..++..+..++. |+..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999988 67788889999999999999998877654 479999999877766655544332 21110
Q ss_pred ---HHHhhCCcHHHHHHHHHH----------------HhCchhHHHHHHH--H-------HHHhhcccccCCchhhhhcc
Q 012438 179 ---SIIQRSNDHQKAQKMLQR----------------VRGIADVEAELND--L-------IRASSISKSITHPFKNIAQR 230 (463)
Q Consensus 179 ---~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~ 230 (463)
...+++.+.++.++..+. ..+..+.+..... . .......++...+.. .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 278 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTST----E 278 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHH----H
Confidence 000111122333332222 0010000000000 0 000000000000000 0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhh----
Q 012438 231 KYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFL---- 305 (463)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~---- 305 (463)
+.+........+..+.....+.....+.|.+.++ .+.+..... .......+..+++.++.+++.||++||+...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 279 HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS-WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG-GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH-HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 1111111222222222233344455666777765 344434444 5667778888889999999999999987654
Q ss_pred -HhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHH
Q 012438 306 -VGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF 384 (463)
Q Consensus 306 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 384 (463)
.+..+.+++.+.+....... .. ......+.......+.+.+.... .+....+..|.+|++.|+++.|+.+...+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALY-GT---SGKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHC-CC---CTTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CC---CCCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55555555544443321110 00 01112333444444444444433 45566778899999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCC
Q 012438 385 LFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFFLPET 427 (463)
Q Consensus 385 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (463)
+|..+++.+.+.+.+......+...++++++..++.++..++.
T Consensus 433 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 433 VGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888776555666666666666555555544443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-33 Score=257.98 Aligned_cols=336 Identities=15% Similarity=0.138 Sum_probs=248.9
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 101 (463)
+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.++.+++++++.+++.|+++|++.+..
T Consensus 26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~ 105 (375)
T 2gfp_A 26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVG 105 (375)
T ss_dssp HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 46677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCChHHH
Q 012438 102 NQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETPNSI 180 (463)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~~~ 180 (463)
.+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+. .+||+.|++.++..++..+.. .++||++++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T 2gfp_A 106 GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLLVLCAGVTFSMARWMPETRPVD 182 (375)
T ss_dssp HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence 999999999999999999999999999999999999998776543 589999999888887776644 4478876321
Q ss_pred HhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHH
Q 012438 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPV 260 (463)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
++ +++.+.++++.+++ +.++...+..+...........+.|.
T Consensus 183 ---~~-------------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2gfp_A 183 ---AP-------------------------------RTRLLTSYKTLFGN----SGFNCYLLMLIGGLAGIAAFEACSGV 224 (375)
T ss_dssp ---CC-------------------------------CCCTTTCSTHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred ---cc-------------------------------cccHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01112233444332 22333434444444555666677777
Q ss_pred HHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHH-HHHHHHHHHHHHHhhhCCCCCCcchhHH
Q 012438 261 LFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQ-MLVSQVMIGSIMAAQLGDHGGFSEGYAY 338 (463)
Q Consensus 261 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
++++ .+.+....+ .......++.+++.++.+++.||++++ ...+... ...+...+..... ...+.+
T Consensus 225 ~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 292 (375)
T 2gfp_A 225 LMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF---------GVMNVW 292 (375)
T ss_dssp SSHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH---------HHHHHH
T ss_pred HHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh---------ccccHH
Confidence 7665 666666665 778888889999999999999998772 2222222 2222211111100 012333
Q ss_pred HHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHH
Q 012438 339 LILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGL 412 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (463)
.......+.+.+.+.. .+....+..|..| +.|+++.|+.+...++|..++|.+.+.+.+..++...+...++
T Consensus 293 ~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 293 TLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3444445555554443 4556667789988 8999999999999999999999999999877666555554433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-29 Score=232.97 Aligned_cols=361 Identities=10% Similarity=0.021 Sum_probs=219.7
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHH---HhhhhhhhH-HHHHHHHHHhhcc
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGS---ALGGSAFNI-YMLIFGRLLLGVG 97 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~~~-~~l~~~r~l~G~~ 97 (463)
+++++|+|..+.|++.+.+.++..++++++|+++||+|||++++++..+++++. ..+.+++.. ..+...+++.|++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678999999999999999999999999999999999999998888775532 222333322 1245567777777
Q ss_pred cccccchhhHHhhhcCCC--CcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCC
Q 012438 98 IGFGNQSVPLYLSEMAPP--KYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPE 175 (463)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 175 (463)
.+...+.....+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..++..+..++.+|
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCc
Confidence 666555555555555543 456777788888888999999988877654 36999999888776655555555444
Q ss_pred ChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHH
Q 012438 176 TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVG 255 (463)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (463)
++++ +.+++++ + +.+.++....++++.+++ +.++...+..+.....+..+.
T Consensus 190 ~~~~---~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 190 DAPS---SATVANA-V---------------------GANHSAFSLKLALELFRQ----PKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp CCSC---SSCSSSS-S---------------------SSCCCCCCHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---ccccccc-c---------------------ccccccccHHHHHHHhcC----CchhhHHHHHHHHHHHHHHHH
Confidence 3311 0000000 0 000000000112223222 222222222222222334444
Q ss_pred hhHHHHHHHcCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCC
Q 012438 256 LYSPVLFRTLKLGE---STSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGF 332 (463)
Q Consensus 256 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (463)
.+.|.++.+..... ....+....+..++.+++.++.++++||+|||+.+..+..+.++..+.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~----------- 309 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----------- 309 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 55677765532211 2222356667777888899999999999999998887766665554333211
Q ss_pred cchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHH-HHHHHHHHHHHHhhhhhhhhcccchhHHHHHH
Q 012438 333 SEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSIT-VAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGG 411 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (463)
++.+..++...+.+.+... ..+..+.+.+|.+|++.|+++.++. +....+|+.++|.+.|.+.+..++...+...+
T Consensus 310 --~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 310 --TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp --CSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 1122222222222222221 1223456778999999999999994 88889999999999999998877554444444
Q ss_pred HHHHHHHH-HHHhcCCCCC
Q 012438 412 LVLIMTTF-MHFFLPETKN 429 (463)
Q Consensus 412 ~~~~~~~~-~~~~~~~~~~ 429 (463)
+..+++.+ .+...+|+++
T Consensus 387 ~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 387 LVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHHhhhcCCCc
Confidence 44343333 3344454443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=236.74 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=129.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-cchhhhhHHHHHHHHHHHhhhhhh-hHHHHHHHHHHhhcccccccchh
Q 012438 28 FDSQLLTTFTSSLYITGILGSLIASSVTRAL-GRKVSILIGGVAFLAGSALGGSAF-NIYMLIFGRLLLGVGIGFGNQSV 105 (463)
Q Consensus 28 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 105 (463)
++..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hHHhhhcCCCCcccchhhh---hhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc
Q 012438 106 PLYLSEMAPPKYRGTFNIG---FQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF 172 (463)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 172 (463)
.+++.|++|+++|+++.+. .+.+.++|..+++.+++.+.+. .|||+.|++.++..++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 8999999999999998877653 47999999988887766655544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=129.67 Aligned_cols=183 Identities=11% Similarity=0.047 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHH
Q 012438 235 QLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVS 314 (463)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 314 (463)
+.+....+..+........+....|.+.++. .+..+.+ +......++..++.++.|+++||+|||+.+..+.++..++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence 3444444555555555556677788888888 7777777 8888999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhh
Q 012438 315 QVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTF 394 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 394 (463)
.++..+.... .++.+..++...+.+.+.+.. .+....++.|.+|++.|+.++++.+....+|..++|.+.
T Consensus 106 ~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 106 MLFMGFVPWA---------TSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHCHHH---------HSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHhhhhc---------cccHHHHHHHHHHHHHHhhhc-cchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8777661100 023444455555555554433 355567778999999999999999999999999999999
Q ss_pred hhhhhccc-chhHHHH-HHHHHHHHHHHHHhcCCCCC
Q 012438 395 LPMLCHFK-AGIFFFF-GGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 395 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 429 (463)
+.+.+..+ +...+.. +++.++..++..+..||+++
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 99888777 6654444 44444555555666776543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-12 Score=119.17 Aligned_cols=154 Identities=12% Similarity=0.020 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHH
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQV 316 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 316 (463)
+..+...++.............|.+.++++.+..+.+ ++.+...++..++.++.|+++||+|||+.+..+..+..++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3334444444445556677778888899999988877 888999999999999999999999999999999999888887
Q ss_pred HHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhh
Q 012438 317 MIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLP 396 (463)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 396 (463)
+...... .++.+..++...+.+.+.+.. .+....+++|.+|++.|+.++++.+....+|..++|.+.+.
T Consensus 107 ~~~~~~~----------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 107 LFWPAAE----------IMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHH----------TTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHhccc----------cccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7633211 133455555556666555544 34556777899999999999999999999999999999999
Q ss_pred hh-hccc
Q 012438 397 ML-CHFK 402 (463)
Q Consensus 397 ~~-~~~~ 402 (463)
+. +..+
T Consensus 176 l~~~~~~ 182 (438)
T 3o7q_A 176 LILSNVP 182 (438)
T ss_dssp HHHTSSC
T ss_pred HHhcccc
Confidence 88 5443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-11 Score=119.07 Aligned_cols=165 Identities=14% Similarity=0.064 Sum_probs=119.0
Q ss_pred HHHhhhhhhHHHhhHHHHHH-HcC------CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhhHhhHHHHHHH
Q 012438 244 FFQQVTGINIVGLYSPVLFR-TLK------LGESTSLLLSALVAGGMGTVFAIVSMILADKF-GRKVLFLVGGIQMLVSQ 315 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~ 315 (463)
.+.....++....+.+.+++ +.+ .+..+.+ .......++..++.++.|+++||+ |||+.+..+.++..++.
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~ 99 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH 99 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33333455556667776664 567 7777777 888889999999999999999999 99999998888887777
Q ss_pred HHHHHHHHhhhCCCCCCcch-hHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHH---HHHHHHHHHHHHH
Q 012438 316 VMIGSIMAAQLGDHGGFSEG-YAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSI---TVAVNFLFTFLTA 391 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~ 391 (463)
++..+. + +.+..++...+.+.+.+.. .+....+++|.+|++.|+++.+. .+....+|..++|
T Consensus 100 ~~~~~~-------------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~ 165 (524)
T 2xut_A 100 AFLAIF-------------EHSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS 165 (524)
T ss_dssp HHHHHT-------------SSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-------------cccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 666543 2 3444455555555554433 45666777899999999876666 8888999999999
Q ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHHh
Q 012438 392 QTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFF 423 (463)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (463)
.+.+.+.+..++...+...++..+.+.+....
T Consensus 166 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888766555555544444444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-12 Score=117.62 Aligned_cols=170 Identities=14% Similarity=0.099 Sum_probs=125.6
Q ss_pred HHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHH
Q 012438 244 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMA 323 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 323 (463)
.+.............|.+.++.+.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-- 85 (375)
T 2gfp_A 9 VAVGQMAQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--
Confidence 333444555666677888888998888877 88889999999999999999999999999999998888887777654
Q ss_pred hhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 012438 324 AQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKA 403 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 403 (463)
++.+..+....+.+.+.+.. .+....+..|.+|+++|++++++.+....+|..++|.+.+.+.+..++
T Consensus 86 -----------~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 86 -----------SSLTVLIAASAMQGMGTGVG-GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred -----------ccHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 33444444555555444433 455566778999999999999999999999999999999999887776
Q ss_pred hhHHHHHHHHHHHHHH-HHHhcCCCC
Q 012438 404 GIFFFFGGLVLIMTTF-MHFFLPETK 428 (463)
Q Consensus 404 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 428 (463)
...+...++..+...+ ..+..||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 6555444443333322 334455543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=117.37 Aligned_cols=170 Identities=12% Similarity=0.089 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHH------cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhHhhH
Q 012438 237 VMAILIPFFQQVTGINIVGLYSPVLFRT------LKLGESTSLLLSALVAGGMGTVFAIVSMILADK-FGRKVLFLVGGI 309 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~ 309 (463)
++......+.....++....+.+.++++ .+.+..+.+ ...+...++..++.++.|+++|| +|||+.+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3334444444445566666667776654 688877777 88889999999999999999999 899999999988
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCccc--ccchhHHHHHHHHHHH
Q 012438 310 QMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEI--RSAGQSITVAVNFLFT 387 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~ 387 (463)
+..++.++.... ++.+..++...+.+.+.+.. .+....+++|.+|++. |+.+.++.+....+|.
T Consensus 94 ~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 159 (491)
T 4aps_A 94 LIMLGHIVLALP-------------FGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA 159 (491)
T ss_dssp HHHHHHHHHHSC-------------CSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHH
Confidence 888777665432 22344444555555544433 3556677789999988 7788888999999999
Q ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q 012438 388 FLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMH 421 (463)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (463)
.++|.+.+.+.+..++...+...++..+.+.+..
T Consensus 160 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 160 FIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887665555554444444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.8e-12 Score=117.64 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=121.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHH
Q 012438 29 DSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLY 108 (463)
Q Consensus 29 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 108 (463)
+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888999999999999999999999999999888888888888888888888888888777777777889
Q ss_pred hhhcCCCCcccchhhh-hhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCCh
Q 012438 109 LSEMAPPKYRGTFNIG-FQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETP 177 (463)
Q Consensus 109 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~ 177 (463)
+.|.+|++.|+...+. ++....+|..++|.+++.+.+. .|++..|.+.++.+++..+..++ .||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999888 4888889999999998776543 47888998888887777666544 66554
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.4e-10 Score=106.70 Aligned_cols=150 Identities=16% Similarity=0.046 Sum_probs=105.6
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh-----hhHHHHHHH-HHHhhccccc
Q 012438 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA-----FNIYMLIFG-RLLLGVGIGF 100 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~-r~l~G~~~~~ 100 (463)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+... -+..+. ...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 386 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF-AMS 386 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HhH
Confidence 4566666677777788889999999999999999999999888888776665443 122222222 222222 223
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhccc---CCcchhHHHHHhhHHHHHHHHHHh-hcCCCC
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKI---KGGWGWRISLAMAAAPASILTIGA-IFLPET 176 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~ 176 (463)
..+....+.+|.+|.+.|++++++......+|..+++.+...+... ....++.+.|++.++++++..+.. +++||+
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 4467778999999999999999999999999888887664433221 011245567888888887777665 459998
Q ss_pred h
Q 012438 177 P 177 (463)
Q Consensus 177 ~ 177 (463)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 5
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 463 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.45 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.34 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-36 Score=287.33 Aligned_cols=365 Identities=15% Similarity=0.010 Sum_probs=251.7
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhh----hHHHHHHHHHHhhccccc
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAF----NIYMLIFGRLLLGVGIGF 100 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~~~ 100 (463)
|+|+|.+|+|++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++.|++.|.
T Consensus 53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 132 (447)
T d1pw4a_ 53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM 132 (447)
T ss_dssp SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhh
Confidence 4699999999999999999999999999999999999999999999999999988764 778999999999999999
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCChHH
Q 012438 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETPNS 179 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~~~ 179 (463)
..+....++.|++|+++|++++++.+.+..+|..+++.++....... .+||+.|++.+++.++..+..++ .+|+|+.
T Consensus 133 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (447)
T d1pw4a_ 133 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF--NDWHAALYMPAFCAILVALFAFAMMRDTPQS 210 (447)
T ss_dssp THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT--CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred hhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh--hcccccchhhhhhHHHHHHHHHHhcccchhh
Confidence 99999999999999999999999999999999999998876654433 26999999988888776666554 6666543
Q ss_pred HHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHH
Q 012438 180 IIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSP 259 (463)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
......++.+.+ ..+..++ ..++.....+...+...+++.++......++.....+....+.|
T Consensus 211 ~~~~~~~~~~~~---------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (447)
T d1pw4a_ 211 CGLPPIEEYKND---------------YPDDYNE--KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSP 273 (447)
T ss_dssp TCCCSCTTTCCC------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhh---------------cccchhh--ccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhh
Confidence 221111000000 0000000 00000111111122233344455455555555556667778888
Q ss_pred HHHHHc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHH
Q 012438 260 VLFRTL-KLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAY 338 (463)
Q Consensus 260 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
.++++. +.+..... .......+..+++.++.+++.||++|++.................... . ....+.+
T Consensus 274 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~ 344 (447)
T d1pw4a_ 274 TYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-----M---NPAGNPT 344 (447)
T ss_dssp HHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT-----S---CCTTCHH
T ss_pred hhcccccccccchhh-hhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHH-----h---cccccHH
Confidence 887664 55555555 888888999999999999999999987655444333333222222211 0 0112334
Q ss_pred HHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHH-HHHHHhhhhhhhhcccchhHHHHHHHHHHHH
Q 012438 339 LILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLF-TFLTAQTFLPMLCHFKAGIFFFFGGLVLIMT 417 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (463)
...+...+.+.+.. ...+....+..|.+|++.|+++.|+.+..++++ ..++|.+.|.+.|..++...+...+.+.+.+
T Consensus 345 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 423 (447)
T d1pw4a_ 345 VDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA 423 (447)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 44444444443332 223455667789999999999999999998875 5667889999999998665444444433333
Q ss_pred H
Q 012438 418 T 418 (463)
Q Consensus 418 ~ 418 (463)
.
T Consensus 424 ~ 424 (447)
T d1pw4a_ 424 V 424 (447)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.5e-28 Score=228.95 Aligned_cols=365 Identities=10% Similarity=0.014 Sum_probs=232.3
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHH----HHHHHHHhhcc
Q 012438 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYM----LIFGRLLLGVG 97 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~----l~~~r~l~G~~ 97 (463)
+++++|+|+.++|++.+++.++..++++++|+++||+|||++++++..+..++..+..+..+... .++.+.+.+.+
T Consensus 34 l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T d1pv7a_ 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc
Confidence 35667999999999999999999999999999999999999999999999998888887765543 44566666666
Q ss_pred cccccchhhHHhhhcCCC--CcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHH-HhhcCC
Q 012438 98 IGFGNQSVPLYLSEMAPP--KYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTI-GAIFLP 174 (463)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~~~ 174 (463)
.+...........+..++ +++.+..+........+..+++.+++.+.+. +|+..+........+..+ ..+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (417)
T d1pv7a_ 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI----NNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp GGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc----cccccccchhhHHHHHHHHHHHHhc
Confidence 665555555555444432 3456677788888888999999888777653 466666655555554444 444566
Q ss_pred CChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHH
Q 012438 175 ETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIV 254 (463)
Q Consensus 175 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (463)
|+|+... + .++. +...++.......+..+.+..+........... .....
T Consensus 190 ~~~~~~~---~-~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 239 (417)
T d1pv7a_ 190 DAPSSAT---V-ANAV----------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSC----TYDVF 239 (417)
T ss_dssp CSCSSSC---S-SHHH----------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHH----HHHHH
T ss_pred ccccchh---h-hhhh----------------------hhhcccccccccccccccccccchhhhhHHHHH----HHHhh
Confidence 6653111 1 0000 000001111111112222222222221211111 11222
Q ss_pred HhhHHHHHHHcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCC
Q 012438 255 GLYSPVLFRTLKLG---ESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGG 331 (463)
Q Consensus 255 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (463)
....+.+....... .............++..++..+.+++.||.++|+.+..+..+..++.+.+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------- 309 (417)
T d1pv7a_ 240 DQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---------- 309 (417)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred hccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc----------
Confidence 22222222222211 11222256667777888899999999999999999988888887776665542
Q ss_pred CcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHH-HHHHHHHHHHHHhhhhhhhhcccchh-HHHH
Q 012438 332 FSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSIT-VAVNFLFTFLTAQTFLPMLCHFKAGI-FFFF 409 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~ 409 (463)
++.+.......+.+.+.+.. .+....+.+|.+|++.|+++.|+. +....+|..++|.+.|.+.|..|+.. +++.
T Consensus 310 ---~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~ 385 (417)
T d1pv7a_ 310 ---TSALEVVILKTLHMFEVPFL-LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ---cccchhhHHHHHHHHHHHHH-HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 33444455555555554443 345566778999999999999986 45677999999999999999998654 5555
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHH
Q 012438 410 GGLVLIMTTFMHFFLPETKNVPIEQ 434 (463)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (463)
+++.++..++..+.++++++.+..+
T Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 386 GLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHHHHhhcCCCccchhH
Confidence 5565666666667777666655433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.6e-13 Score=127.80 Aligned_cols=165 Identities=11% Similarity=0.027 Sum_probs=118.3
Q ss_pred HHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCC
Q 012438 253 IVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGF 332 (463)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (463)
.+....|. +++.|.+..+.+ ++.+...++..++.++.|+++||+|||+.+..+.++..++.++.......
T Consensus 43 ~~~~~~p~-~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-------- 112 (447)
T d1pw4a_ 43 NFALAMPY-LVEQGFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-------- 112 (447)
T ss_dssp SHHHHHHH-TTSSTTCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH--------
T ss_pred HHHHHHHH-HHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh--------
Confidence 34444454 456889988888 88889999999999999999999999999999988888877776553211
Q ss_pred cchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhccc-ch-hHHHHH
Q 012438 333 SEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFK-AG-IFFFFG 410 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~~~~~ 410 (463)
..+.+..++...+.+.+.+.. .+....++.|.+|+++|+.++++.+....+|..+++.+.+...+..+ +. .+++.+
T Consensus 113 -~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~ 190 (447)
T d1pw4a_ 113 -TSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 190 (447)
T ss_dssp -HSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred -hhhHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhh
Confidence 022334444444444444433 34455666899999999999999999999999999988887776553 33 445555
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 012438 411 GLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~ 429 (463)
.+..+..++.+...+++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~ 209 (447)
T d1pw4a_ 191 FCAILVALFAFAMMRDTPQ 209 (447)
T ss_dssp HHHHHHHHHHHHHCCCSST
T ss_pred hhHHHHHHHHHHhcccchh
Confidence 5555666666666665543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=6.8e-13 Score=121.76 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=130.0
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccch
Q 012438 25 YCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQS 104 (463)
Q Consensus 25 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 104 (463)
+.+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++.-++.|++.+...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 332 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 33557778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhcCCCCcccchhhhh-hHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCC
Q 012438 105 VPLYLSEMAPPKYRGTFNIGF-QLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPE 175 (463)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e 175 (463)
..+++.|.+|+++|++..++. +....+|..+++.+++.+.+. .||+..|++.+++.++..++..+ +++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999975 567789999999998777654 47999999988888776666555 443
|