Query 012439
Match_columns 463
No_of_seqs 294 out of 516
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:28:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 5.6E-30 1.9E-34 227.1 14.5 112 131-242 8-121 (130)
2 4i1k_A B3 domain-containing tr 99.8 5.8E-19 2E-23 159.6 12.2 99 132-240 44-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.6 8.5E-16 2.9E-20 130.4 11.2 95 134-239 8-102 (104)
4 1na6_A Ecorii, restriction end 93.8 0.072 2.5E-06 55.2 6.0 93 133-226 17-123 (404)
5 3cgm_A SLYD, peptidyl-prolyl C 72.6 12 0.00042 33.5 8.0 100 215-330 3-110 (158)
6 2k8i_A SLYD, peptidyl-prolyl C 64.6 28 0.00097 31.5 8.8 103 215-330 3-114 (171)
7 2kfw_A FKBP-type peptidyl-prol 59.3 17 0.00057 33.9 6.4 104 214-330 2-114 (196)
8 3p8d_A Medulloblastoma antigen 58.2 22 0.00074 28.0 5.9 56 297-369 3-58 (67)
9 3o27_A Putative uncharacterize 52.1 17 0.0006 28.8 4.3 36 207-242 31-67 (68)
10 3qii_A PHD finger protein 20; 52.0 28 0.00094 28.8 5.7 55 298-369 19-73 (85)
11 2kr7_A FKBP-type peptidyl-prol 50.4 44 0.0015 29.3 7.4 105 213-330 5-119 (151)
12 4dt4_A FKBP-type 16 kDa peptid 45.8 59 0.002 29.5 7.6 106 214-330 24-138 (169)
13 3pr9_A FKBP-type peptidyl-prol 35.6 1.4E+02 0.0047 26.6 8.2 64 257-330 54-123 (157)
14 2e63_A KIAA1787 protein; struc 33.2 26 0.00088 31.9 3.1 25 212-236 115-139 (170)
15 2equ_A PHD finger protein 20-l 32.5 45 0.0016 26.4 4.0 40 298-351 7-46 (74)
16 2k75_A Uncharacterized protein 31.3 1.4E+02 0.0049 24.5 7.2 49 174-242 39-91 (106)
17 1mhn_A SurviVal motor neuron p 31.2 55 0.0019 24.3 4.1 40 299-350 2-41 (59)
18 4a4f_A SurviVal of motor neuro 30.7 59 0.002 24.6 4.3 42 297-350 5-46 (64)
19 2jng_A Cullin-7, CUL-7; P53 bi 30.4 40 0.0014 28.8 3.5 69 289-369 10-78 (105)
20 3s6w_A Tudor domain-containing 30.0 50 0.0017 23.9 3.7 39 300-350 1-39 (54)
21 3m7a_A Uncharacterized protein 29.9 55 0.0019 29.0 4.5 46 175-223 84-140 (140)
22 2cbp_A Cucumber basic protein; 21.7 29 0.001 28.5 1.1 18 210-227 19-36 (96)
23 1g5v_A SurviVal motor neuron p 21.6 94 0.0032 25.4 4.1 41 298-350 8-48 (88)
24 3h8z_A FragIle X mental retard 21.3 1.8E+02 0.0061 25.4 6.1 58 271-329 28-90 (128)
25 2qcp_X Cation efflux system pr 20.6 98 0.0033 24.6 4.0 25 212-236 51-77 (80)
26 1x9u_A Umecyanin; cupredoxin, 20.6 35 0.0012 29.1 1.4 19 208-226 23-41 (116)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.97 E-value=5.6e-30 Score=227.09 Aligned_cols=112 Identities=31% Similarity=0.507 Sum_probs=103.6
Q ss_pred CCCcceEEEeccccCCCCCCceeeeccchhhcCCCCCcCCCCCceEEEEEeCCCCEEEEEEEEeCCCCceeeccchhHHH
Q 012439 131 SSTPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFV 210 (463)
Q Consensus 131 ~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~lLTtGWs~FV 210 (463)
.+..++|+|+||+|||+++++|+||+++|+.|||.++.++..+.++|.++|.+|++|+|+|+||+++++|+|++||+.||
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV 87 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV 87 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHH
T ss_pred CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHH
Confidence 45567999999999999999999999999999999997766788999999999999999999999999999999999999
Q ss_pred hhcCCCCCCEEEEEecCC--CcEEEEEEEccccc
Q 012439 211 NKKKLVSGDAVLFLRGED--GELKIGIRRAAQVK 242 (463)
Q Consensus 211 ~~K~L~aGD~VvF~R~~~--G~l~VgIRRa~~~~ 242 (463)
++|+|++||+|+|++.++ +.|+|++||+....
T Consensus 88 ~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 88 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 999999999999999864 57999999998654
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.79 E-value=5.8e-19 Score=159.59 Aligned_cols=99 Identities=21% Similarity=0.296 Sum_probs=87.6
Q ss_pred CCcceEEEeccccCCCCCCceeeeccchhhcCCCCCcCCCCCceEEEEEeCCCCEEEEEEEEeCCCCceeeccchhHHHh
Q 012439 132 STPHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVN 211 (463)
Q Consensus 132 ~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~lLTtGWs~FV~ 211 (463)
+.-++|+|+||+||+.++..|.||+++++.+||..+ +.+.+.|. |+.|.|+|+|++. ++.|++||+.||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHH
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHH
Confidence 345699999999999887789999999999999764 46888888 6999999999973 7899999999999
Q ss_pred hcCCCCCCEEEEEecCCC--cEEEEEEEccc
Q 012439 212 KKKLVSGDAVLFLRGEDG--ELKIGIRRAAQ 240 (463)
Q Consensus 212 ~K~L~aGD~VvF~R~~~G--~l~VgIRRa~~ 240 (463)
+++|++||+|+|...++. .|.|.|.|+..
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred HcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 999999999999998765 69999999864
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.64 E-value=8.5e-16 Score=130.43 Aligned_cols=95 Identities=23% Similarity=0.396 Sum_probs=83.1
Q ss_pred cceEEEeccccCCCCCCceeeeccchhhcCCCCCcCCCCCceEEEEEeCCCCEEEEEEEEeCCCCceeeccchhHHHhhc
Q 012439 134 PHMFCKTLTASDTSTCGGFSVPRRAAEDCFPPLDYMQQRPSQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKK 213 (463)
Q Consensus 134 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~lLTtGWs~FV~~K 213 (463)
-+.|.|+|+++|. ..+|.||+++++.+.+.+. ..+.++|..|++|++++.+++ ++..|++||.+||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 3589999999993 4599999999988665443 378999999999999999874 5789999999999999
Q ss_pred CCCCCCEEEEEecCCCcEEEEEEEcc
Q 012439 214 KLVSGDAVLFLRGEDGELKIGIRRAA 239 (463)
Q Consensus 214 ~L~aGD~VvF~R~~~G~l~VgIRRa~ 239 (463)
+|++||.|+|...++..+.|.|.+..
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECCC
Confidence 99999999999999999999998853
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.80 E-value=0.072 Score=55.16 Aligned_cols=93 Identities=24% Similarity=0.354 Sum_probs=66.3
Q ss_pred CcceEEEeccccCCCCCC----ceeeeccchhhcCCCCCc-CCCCCceEEEEE--eCCCCEEEEEEEEeC------CCCc
Q 012439 133 TPHMFCKTLTASDTSTCG----GFSVPRRAAEDCFPPLDY-MQQRPSQQLVAK--DLHGVEWKFRHIYRG------QPRR 199 (463)
Q Consensus 133 ~~~~F~K~LT~SDv~~~g----rfsVPk~~Ae~~FP~Ld~-~~~~p~q~L~~~--D~~G~~W~Fr~~yrg------~prr 199 (463)
.-+.|+|.|++.|++..| ++.+|+..+...||.|+. .+..+.+.+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 346899999999998763 799999879999999883 344566666544 443445599999986 3345
Q ss_pred eeeccchh-HHHhhcCCCCCCEEEEEec
Q 012439 200 HLLTTGWS-AFVNKKKLVSGDAVLFLRG 226 (463)
Q Consensus 200 ~lLTtGWs-~FV~~K~L~aGD~VvF~R~ 226 (463)
|-||. |. .+.-.+...+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 67762 21 3444577789999999754
No 5
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=72.60 E-value=12 Score=33.46 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=62.4
Q ss_pred CCCCCEEEEE-ec-CCCcEEEEEEEcccccCCCCCCcccCCCCCCccHHHHHHHHHcCCceEEEEeCCC------CCCce
Q 012439 215 LVSGDAVLFL-RG-EDGELKIGIRRAAQVKNGATFPSFCNQHSSTSSVTEVVDAIARKRAFSISYNPRA------SASEF 286 (463)
Q Consensus 215 L~aGD~VvF~-R~-~~G~l~VgIRRa~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~tg~~F~V~Y~Pr~------~~~EF 286 (463)
.+.||.|.+. .. .+|+.+-.-. -... . ... .-..-+.+|..-...|..++|.--|-. ...-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~~f~------~-G~g-~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--LSYL------H-GHR-NLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--EEEE------T-TSS-SSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--EEEE------E-CCC-CcChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5688988773 22 5777554433 1111 0 001 113356666666678888888766543 23557
Q ss_pred eEehhhHhhhcCCCcccCCeEEEEeeccccccceeeeEEEEeec
Q 012439 287 VIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSD 330 (463)
Q Consensus 287 vVp~~ky~~a~~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~ 330 (463)
.|+++.|... ..|.+||+|.+. +++. +...|+|+.+.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQ--DMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEE--ETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 8999888643 579999999864 4443 467899998875
No 6
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=64.58 E-value=28 Score=31.48 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=63.2
Q ss_pred CCCCCEEEEE-e--cCCCcEEEEEEEcccccCCCCCCcccCCCCCCccHHHHHHHHHcCCceEEEEeCCC------CCCc
Q 012439 215 LVSGDAVLFL-R--GEDGELKIGIRRAAQVKNGATFPSFCNQHSSTSSVTEVVDAIARKRAFSISYNPRA------SASE 285 (463)
Q Consensus 215 L~aGD~VvF~-R--~~~G~l~VgIRRa~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~tg~~F~V~Y~Pr~------~~~E 285 (463)
.+.||.|.+. . ..+|+.+-.-+.. .|.........-..-+.+|..-...|..++|.--|-. ...-
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~v 76 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLV 76 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCTTSE
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCChhhE
Confidence 5689998773 3 3477754433210 1222111111223457777777778888888766543 2344
Q ss_pred eeEehhhHhhhcCCCcccCCeEEEEeeccccccceeeeEEEEeec
Q 012439 286 FVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSD 330 (463)
Q Consensus 286 FvVp~~ky~~a~~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~ 330 (463)
+.||++.|... ..+.+||+|.+ ++++. . ..|+|+.|.+
T Consensus 77 ~~v~~~~f~~~--~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 77 QRVPKDVFMGV--DELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEGGGGTTS--SCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEeeHHHCCcc--cCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 68899988642 47899999985 45555 2 5889998864
No 7
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=59.28 E-value=17 Score=33.86 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=62.1
Q ss_pred CCCCCCEEEEE-e--cCCCcEEEEEEEcccccCCCCCCcccCCCCCCccHHHHHHHHHcCCceEEEEeCCC------CCC
Q 012439 214 KLVSGDAVLFL-R--GEDGELKIGIRRAAQVKNGATFPSFCNQHSSTSSVTEVVDAIARKRAFSISYNPRA------SAS 284 (463)
Q Consensus 214 ~L~aGD~VvF~-R--~~~G~l~VgIRRa~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~tg~~F~V~Y~Pr~------~~~ 284 (463)
..+.||.|.+. . ..+|+.+-.-+. ..|.........-..-+.+|..-...|..++|.--|-. ...
T Consensus 2 ~i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 2 KVAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCCSSCEEEEEEEEEETTTEEEEECCT------TSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCCEEEEEEEEEECCCCEEEecCC------CCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 36789998873 3 356765433211 01222221111123346666666678888888766543 335
Q ss_pred ceeEehhhHhhhcCCCcccCCeEEEEeeccccccceeeeEEEEeec
Q 012439 285 EFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSD 330 (463)
Q Consensus 285 EFvVp~~ky~~a~~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~ 330 (463)
-+.||++.|.. ...+.+||+|.+ ++++. .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 57889988853 246899999975 45454 56888888864
No 8
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=58.15 E-value=22 Score=28.04 Aligned_cols=56 Identities=11% Similarity=0.075 Sum_probs=39.4
Q ss_pred cCCCcccCCeEEEEeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeecCCCCCCCCCccccceeecCC
Q 012439 297 LDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDDVESNRHNRVSPWEIEPSGS 369 (463)
Q Consensus 297 ~~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~~dp~~Wp~S~WR~L~V~WDe~~~~~~~RVSPWeIEpv~~ 369 (463)
|...|++|+++.-++ .|. ++|-++|++|... ....|.+++... +.|..=+|.|++.
T Consensus 3 ~~~~~~vGd~vmArW--~D~--~yYpA~I~si~~~----------~~Y~V~F~dG~~---etvk~~~ikp~~~ 58 (67)
T 3p8d_A 3 MSSEFQINEQVLACW--SDC--RFYPAKVTAVNKD----------GTYTVKFYDGVV---QTVKHIHVKAFSK 58 (67)
T ss_dssp --CCCCTTCEEEEEC--TTS--CEEEEEEEEECTT----------SEEEEEETTSCE---EEEEGGGEEECC-
T ss_pred cCcccccCCEEEEEc--CCC--CEeeEEEEEECCC----------CeEEEEEeCCce---EEEeHHHcccCCc
Confidence 456799999999999 343 6999999999874 348899998333 4455555555543
No 9
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=52.13 E-value=17 Score=28.79 Aligned_cols=36 Identities=14% Similarity=0.360 Sum_probs=31.0
Q ss_pred hHHHhhcCCCCCCEEEEEec-CCCcEEEEEEEccccc
Q 012439 207 SAFVNKKKLVSGDAVLFLRG-EDGELKIGIRRAAQVK 242 (463)
Q Consensus 207 s~FV~~K~L~aGD~VvF~R~-~~G~l~VgIRRa~~~~ 242 (463)
.++++.-+|+.||.+...-+ .+|++.+..+|-++.+
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~k 67 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKELK 67 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGGC
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhcc
Confidence 48999999999999999886 4889999999976543
No 10
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=51.97 E-value=28 Score=28.75 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=39.9
Q ss_pred CCCcccCCeEEEEeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeecCCCCCCCCCccccceeecCC
Q 012439 298 DHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDDVESNRHNRVSPWEIEPSGS 369 (463)
Q Consensus 298 ~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~~dp~~Wp~S~WR~L~V~WDe~~~~~~~RVSPWeIEpv~~ 369 (463)
...|.+|+++--++ + |. ++|-++|++|... ..+.|.+++... +.|.+=+|.|++.
T Consensus 19 ~~~f~vGd~VlArW-~-D~--~yYPAkI~sV~~~----------~~YtV~F~DG~~---etvk~~~IKp~~~ 73 (85)
T 3qii_A 19 SSEFQINEQVLACW-S-DC--RFYPAKVTAVNKD----------GTYTVKFYDGVV---QTVKHIHVKAFSK 73 (85)
T ss_dssp --CCCTTCEEEEEC-T-TS--CEEEEEEEEECTT----------SEEEEEETTSCE---EEEEGGGEEECC-
T ss_pred CcccccCCEEEEEe-C-CC--CEeeEEEEEECCC----------CeEEEEEeCCCe---EEecHHHcccCCh
Confidence 45799999999999 3 43 6999999999874 358999998333 4466666666654
No 11
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=50.36 E-value=44 Score=29.34 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=62.8
Q ss_pred cCCCCCCEEEEE-e--cC-CCcEEEEEEEcccccCCCCCCcccCCCCCCccHHHHHHHHHcCCceEEEEeCC------CC
Q 012439 213 KKLVSGDAVLFL-R--GE-DGELKIGIRRAAQVKNGATFPSFCNQHSSTSSVTEVVDAIARKRAFSISYNPR------AS 282 (463)
Q Consensus 213 K~L~aGD~VvF~-R--~~-~G~l~VgIRRa~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~tg~~F~V~Y~Pr------~~ 282 (463)
+..+.||.|.+. . .. +|+.+-.-+. ..|.........-..-+.+|..-...|..++|.--|- ..
T Consensus 5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~~ 78 (151)
T 2kr7_A 5 DLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES 78 (151)
T ss_dssp CCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCS
T ss_pred cCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCCc
Confidence 456789998874 3 23 6765433211 0122111111112334666666667788888776543 33
Q ss_pred CCceeEehhhHhhhcCCCcccCCeEEEEeeccccccceeeeEEEEeec
Q 012439 283 ASEFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSD 330 (463)
Q Consensus 283 ~~EFvVp~~ky~~a~~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~ 330 (463)
..-+.||+..| . ...+.+||+|.+ .+++. ....|+|+.|.+
T Consensus 79 ~~v~~v~~~~f-~--~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 79 SYLQEVPRDQF-E--GIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CEEEEEEGGGG-T--TSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred ceEEEEcHHHc-C--CCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 35578899888 2 357999999986 44454 357899998865
No 12
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=45.82 E-value=59 Score=29.46 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=64.8
Q ss_pred CCCCCCEEEEE-e--cCCCcEEEEEEEcccccCCCCCCcccCCCCCCccHHHHHHHHHcCCceEEEEeCCCCC------C
Q 012439 214 KLVSGDAVLFL-R--GEDGELKIGIRRAAQVKNGATFPSFCNQHSSTSSVTEVVDAIARKRAFSISYNPRASA------S 284 (463)
Q Consensus 214 ~L~aGD~VvF~-R--~~~G~l~VgIRRa~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~tg~~F~V~Y~Pr~~~------~ 284 (463)
..+.||.|.+. . ..+|+.+-.-+.. +.|.........-..-+.+|..-...|..++|..-|-..- .
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~l 98 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDL 98 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHH
Confidence 57789999884 3 3577754332110 1122211111112345677777778888888887665432 3
Q ss_pred ceeEehhhHhhhcCCCcccCCeEEEEeeccccccceeeeEEEEeec
Q 012439 285 EFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSD 330 (463)
Q Consensus 285 EFvVp~~ky~~a~~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~ 330 (463)
=+.||++.|... ..+.+||+|.+ ++++. ....|+|+.|.+
T Consensus 99 v~~vp~~~f~~~--~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 99 IQYFSRREFMDA--GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp EEEEEGGGGTTT--CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred EEEeCHHHCCCc--CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 367888888643 35789999876 44454 357899999875
No 13
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=35.60 E-value=1.4e+02 Score=26.55 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=45.0
Q ss_pred CccHHHHHHHHHcCCceEEEEeCCCC------CCceeEehhhHhhhcCCCcccCCeEEEEeeccccccceeeeEEEEeec
Q 012439 257 TSSVTEVVDAIARKRAFSISYNPRAS------ASEFVIPVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSD 330 (463)
Q Consensus 257 ~~~l~~a~~a~~tg~~F~V~Y~Pr~~------~~EFvVp~~ky~~a~~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~ 330 (463)
..-+.+|..-...|..++|+--|-.. ..=..||++.|... .....+||+|.+ +++ .|+|+.|.+
T Consensus 54 i~G~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~~V~~v~~~~f~~~-~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 54 LPGLDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR-GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp CHHHHHHHHHCCTTCEEEEEECGGGTTCCCCGGGEEEEEHHHHHHT-TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHHHHcCCCCCCEEEEEECcHHhcCCCChHhEEEcCHHHCCcc-cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 34578888888889988888655432 23377899998753 345778999976 322 588988875
No 14
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.18 E-value=26 Score=31.93 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.8
Q ss_pred hcCCCCCCEEEEEecCCCcEEEEEE
Q 012439 212 KKKLVSGDAVLFLRGEDGELKIGIR 236 (463)
Q Consensus 212 ~K~L~aGD~VvF~R~~~G~l~VgIR 236 (463)
-..|.+||.|-|++..+|+|.+.|-
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEES
T ss_pred ccccCCCCEEEEEEcCCcEEEEEEC
Confidence 3457899999999999999999983
No 15
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.54 E-value=45 Score=26.45 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=31.8
Q ss_pred CCCcccCCeEEEEeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeecCC
Q 012439 298 DHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDDV 351 (463)
Q Consensus 298 ~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~~dp~~Wp~S~WR~L~V~WDe~ 351 (463)
...|.+|+++.-+|. |. .||-++|.++.+. ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws--Dg--~~Y~A~I~~v~~~----------~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT--DC--RYYPAKIEAINKE----------GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS--SS--SEEEEEEEEESTT----------SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC--CC--CEEEEEEEEECCC----------CEEEEEEecC
Confidence 467999999999997 43 5999999999642 2468888874
No 16
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=31.26 E-value=1.4e+02 Score=24.52 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=37.1
Q ss_pred ceEEEEEeCCCCEEEEEEEEeCCCCceeeccchhHHHhhcCCCCCCEEEEEec----CCCcEEEEEEEccccc
Q 012439 174 SQQLVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRG----EDGELKIGIRRAAQVK 242 (463)
Q Consensus 174 ~q~L~~~D~~G~~W~Fr~~yrg~prr~lLTtGWs~FV~~K~L~aGD~VvF~R~----~~G~l~VgIRRa~~~~ 242 (463)
...+.+.|..| ..+++.|+.. |..||+|.+... =+|.+.+.+-|..+..
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~ 91 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSSRIE 91 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTSEEE
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcEEEE
Confidence 45789999999 6888888632 889999999743 2688888887665544
No 17
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=31.16 E-value=55 Score=24.25 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=29.7
Q ss_pred CCcccCCeEEEEeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeecC
Q 012439 299 HPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDD 350 (463)
Q Consensus 299 ~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~~dp~~Wp~S~WR~L~V~WDe 350 (463)
+.|.+|+.+..+|. +|. .||-++|.++...+ ....|...+
T Consensus 2 ~~~~~G~~c~A~~s-~Dg--~wYrA~I~~i~~~~---------~~~~V~f~D 41 (59)
T 1mhn_A 2 QQWKVGDKCSAIWS-EDG--CIYPATIASIDFKR---------ETCVVVYTG 41 (59)
T ss_dssp CCCCTTCEEEEECT-TTS--CEEEEEEEEEETTT---------TEEEEEETT
T ss_pred CcCCcCCEEEEEEC-CCC--CEEEEEEEEEcCCC---------CEEEEEEEc
Confidence 46999999999994 343 59999999996532 245677765
No 18
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=30.70 E-value=59 Score=24.57 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=31.9
Q ss_pred cCCCcccCCeEEEEeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeecC
Q 012439 297 LDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDD 350 (463)
Q Consensus 297 ~~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~~dp~~Wp~S~WR~L~V~WDe 350 (463)
....|.+|+.+.-+|.. |. .||.++|.++...+ ....|...+
T Consensus 5 ~~~~~~vGd~c~A~~s~-Dg--~wYrA~I~~v~~~~---------~~~~V~fvd 46 (64)
T 4a4f_A 5 PTHSWKVGDKCMAVWSE-DG--QCYEAEIEEIDEEN---------GTAAITFAG 46 (64)
T ss_dssp CSSCCCTTCEEEEECTT-TS--SEEEEEEEEEETTT---------TEEEEEETT
T ss_pred cCCCCCCCCEEEEEECC-CC--CEEEEEEEEEcCCC---------CEEEEEEEe
Confidence 45689999999999943 43 59999999998532 246788776
No 19
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=30.41 E-value=40 Score=28.83 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=43.2
Q ss_pred ehhhHhhhcCCCcccCCeEEEEeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeecCCCCCCCCCccccceeecC
Q 012439 289 PVNKFLKSLDHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDDVESNRHNRVSPWEIEPSG 368 (463)
Q Consensus 289 p~~ky~~a~~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~~dp~~Wp~S~WR~L~V~WDe~~~~~~~RVSPWeIEpv~ 368 (463)
..+.|-.=+..+.+||||+||.=.-|+-+. -=.|.+. ++ .+- -| ..||.|..... .-.|+-=.||+++
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s-~~G--l~-----~vQv~W~~~G~--TyWV~~~~~Ellg 77 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QS-NNG--VP-----PVQVFWESTGR--TYWVHWHMLEILG 77 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EE-CTT--SS-----EEEEEETTTTE--EEEEEGGGEEECC
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ec-CCC--Cc-----cceeeehhcCc--eEEEEeehhhhcC
Confidence 356677778888999999999643333222 1256666 33 222 22 89999997432 1336666778776
Q ss_pred C
Q 012439 369 S 369 (463)
Q Consensus 369 ~ 369 (463)
.
T Consensus 78 ~ 78 (105)
T 2jng_A 78 F 78 (105)
T ss_dssp C
T ss_pred C
Confidence 5
No 20
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=29.97 E-value=50 Score=23.91 Aligned_cols=39 Identities=10% Similarity=0.021 Sum_probs=27.4
Q ss_pred CcccCCeEEEEeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeecC
Q 012439 300 PFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDD 350 (463)
Q Consensus 300 ~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~~dp~~Wp~S~WR~L~V~WDe 350 (463)
.|.+|+...-+|.. |. .||.++|.++...+ ....|...+
T Consensus 1 ~wk~G~~c~A~~s~-Dg--~wYrA~I~~i~~~~---------~~~~V~fvD 39 (54)
T 3s6w_A 1 MWKPGDECFALYWE-DN--KFYRAEVEALHSSG---------MTAVVKFID 39 (54)
T ss_dssp CCCTTCEEEEEETT-TT--EEEEEEEEEC--CC---------SEEEEEETT
T ss_pred CCCCCCEEEEEECC-CC--CEEEEEEEEEeCCC---------CEEEEEEEc
Confidence 49999999999943 33 59999999986432 245577665
No 21
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=29.93 E-value=55 Score=28.99 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=32.4
Q ss_pred eEEEEEeCCCCEEEEEEEEe---------CCCCceee--ccchhHHHhhcCCCCCCEEEE
Q 012439 175 QQLVAKDLHGVEWKFRHIYR---------GQPRRHLL--TTGWSAFVNKKKLVSGDAVLF 223 (463)
Q Consensus 175 q~L~~~D~~G~~W~Fr~~yr---------g~prr~lL--TtGWs~FV~~K~L~aGD~VvF 223 (463)
.++.+.|.+|++=.....-. ..+-+|+| ..|| +.++++++||.|.|
T Consensus 84 LDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 84 LDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred eEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 56888888887766654211 12346887 6777 68899999999875
No 22
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=21.74 E-value=29 Score=28.54 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=15.3
Q ss_pred HhhcCCCCCCEEEEEecC
Q 012439 210 VNKKKLVSGDAVLFLRGE 227 (463)
Q Consensus 210 V~~K~L~aGD~VvF~R~~ 227 (463)
+..|...+||+|+|.=..
T Consensus 19 a~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 19 PKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTCCBCTTCEEEEECCT
T ss_pred ccCceEcCCCEEEEEecC
Confidence 778999999999997553
No 23
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=21.55 E-value=94 Score=25.35 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=30.5
Q ss_pred CCCcccCCeEEEEeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeecC
Q 012439 298 DHPFAEGMRFKMRSETEDAAEQRCSGLIVGVSDMDPVRWPGSKWRCLLVRWDD 350 (463)
Q Consensus 298 ~~~w~~GmRFkM~fE~EDs~e~r~~GtI~gv~~~dp~~Wp~S~WR~L~V~WDe 350 (463)
...|.+|+.+.-.|. +|. .||-++|.++.... ....|...+
T Consensus 8 ~~~~kvGd~C~A~ys-~Dg--~wYrA~I~~i~~~~---------~~~~V~fiD 48 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWS-EDG--CIYPATIASIDFKR---------ETCVVVYTG 48 (88)
T ss_dssp -CCCCSSCEEEEECT-TTC--CEEEEEEEEEETTT---------TEEEEEETT
T ss_pred cCCCCCCCEEEEEEC-CCC--CEEEEEEEEecCCC---------CEEEEEEec
Confidence 357999999999994 343 59999999997531 245687766
No 24
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=21.35 E-value=1.8e+02 Score=25.40 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=37.8
Q ss_pred CceEEEEeCCCCCCceeEehhhHhh----hcCCCcccCCeEEEEeeccccc-cceeeeEEEEee
Q 012439 271 RAFSISYNPRASASEFVIPVNKFLK----SLDHPFAEGMRFKMRSETEDAA-EQRCSGLIVGVS 329 (463)
Q Consensus 271 ~~F~V~Y~Pr~~~~EFvVp~~ky~~----a~~~~w~~GmRFkM~fE~EDs~-e~r~~GtI~gv~ 329 (463)
..++|.|... ..++-.||.+.+.- +....+++|+.+......+|.. -.||.|+|..+.
T Consensus 28 d~~~V~f~n~-w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 28 DSVTIFFENN-WQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp SEEEEEETTC-TTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CcEEEEEccc-cCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 3478888643 12477888776553 2346789999999988766632 239999999986
No 25
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=20.58 E-value=98 Score=24.59 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=16.3
Q ss_pred hcCCCCCCEEEEEec-CCCcE-EEEEE
Q 012439 212 KKKLVSGDAVLFLRG-EDGEL-KIGIR 236 (463)
Q Consensus 212 ~K~L~aGD~VvF~R~-~~G~l-~VgIR 236 (463)
-++|++||.|.|.-. .+|.+ ...|+
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~it~i~ 77 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSLLQDIK 77 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEE
Confidence 357999999999754 34444 33443
No 26
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=20.57 E-value=35 Score=29.10 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.0
Q ss_pred HHHhhcCCCCCCEEEEEec
Q 012439 208 AFVNKKKLVSGDAVLFLRG 226 (463)
Q Consensus 208 ~FV~~K~L~aGD~VvF~R~ 226 (463)
..+..|...+||+|+|.=.
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~ 41 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFA 41 (116)
T ss_dssp HHHTTCCEETTCEEEECCC
T ss_pred hccccccCcCCCEEEEEec
Confidence 4488999999999999654
Done!