BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012440
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 155/464 (33%), Positives = 227/464 (48%), Gaps = 27/464 (5%)
Query: 9 VVDESHIAXXXXXXXXXXXXLTFLDVSWLFCCPIERILFYELPFPTRHLMQNIIXXXXXX 68
V+++ + LT+ D WL RILFY+LP +Q II
Sbjct: 4 VIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRXRRILFYKLPISRPDFVQTIIPTLKDS 63
Query: 69 XXXXXXXXXXXAGNLAC----NSKPFIQFNEGDSVRVTVTESDADFGHLVANHLRDNRAX 124
AGN+AC + P +++ G+SV V +ESD DF +L+ H R+ +
Sbjct: 64 LSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYHPRNTKDF 123
Query: 125 XXXXXXXXXXXXXXXXDNKTPVMAIQVTVFPNSGISIGVTFIHVAADGSSFNHFMKSWAS 184
PV+AIQVT+FPN GISIG T HVA DG++ F+++WA
Sbjct: 124 YHFVPQLAEPKDAPGV-QLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWAL 182
Query: 185 IHKSVTVSETLPPLSLPCHDRNVIKDPNGLLLSIYLKDWRSVH---NSDATAPAIDENVQ 241
++K + L +P +DR+VIKDPNG+ SI+ + + H SD P
Sbjct: 183 LNKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXSDVVTPP------ 236
Query: 242 VDNVRVTLVPSRDQIDKLKQRVSAQIRSDDESPSRVSTFVVTSALMWVYMIELQESESEI 301
D VR T + +R I KLK V + + V++F VT A +W +I+ + + E
Sbjct: 237 -DKVRGTFIITRHDIGKLKNLVLTR----RPKLTHVTSFTVTCAYVWTCIIKSEAATGEE 291
Query: 302 TDGDMIYHFVPVADCRERFEFPIPASYFGNCLAFLFISAKRSELMGKEGVVFAAKAIG-- 359
D + F ADCR +F P+P SYFGN L ++ +L GKEG A + IG
Sbjct: 292 IDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEA 351
Query: 360 -RKIGELEKGALVGAEKWTSNLNEVVKTGRVLAVGGSPKFGVYETDFGWGRPKKLEFVHF 418
RK + E+ L G+ W ++ V R L+V GSPK +Y DFGWGRP+KLEFV
Sbjct: 352 IRKRXKDEEWILSGS--WFKEYDK-VDAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSI 408
Query: 419 GAYGSF--SLAESRDEEGAIEIGLVIGRDKLDLLNVVFQRRLNF 460
SL++S+D +G +EIGL + + + + F ++F
Sbjct: 409 DNDDGISXSLSKSKDSDGDLEIGLSLSKTRXNAFAAXFTHGISF 452
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 142/461 (30%), Positives = 213/461 (46%), Gaps = 34/461 (7%)
Query: 1 MAQQYTVQVVDESHIAXXXXXXXXXXXXLTFLDVSWLFCCPIERILFYELPFPTRHLMQN 60
MA + V+++S ++ LTF D WL PI + FYELP +
Sbjct: 1 MASLPILTVLEQSQVSPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELPITRSQFTET 60
Query: 61 IIXXXXXXXXXXXXXXXXXAGNL----ACNSKPFIQFNEGDSVRVTVTESDADFGHLVAN 116
++ G L A KP I + EGDSV VT E + D L N
Sbjct: 61 VVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGN 120
Query: 117 HLRDNRAXXXXXXXXXXXXXXXXXDNKTPVMAIQVTVFPNSGISIGVTFIHVAADGSSFN 176
H R N K P+ ++QVT+FPN GI+IG+T H D S+
Sbjct: 121 HPR-NCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRF 179
Query: 177 HFMKSWASIHKSVTVSET-LPPLSLPCHDRNVIKDPNGLLLSIYLKDWR-SVHNSDATAP 234
F+K+W SI +S E+ L + P +DR +IK P +L YLK + N D
Sbjct: 180 CFLKAWTSIARSGNNDESFLANGTRPLYDR-IIKYP--MLDEAYLKRAKVESFNEDYVTQ 236
Query: 235 AIDENVQVDNVRVTLVPSRDQIDKLKQRVSAQIRSDDESPSRVSTFVVTSALMWVYMIEL 294
++ D +R T + +R I++LK RV AQ+ + + VS+F V A +W + +
Sbjct: 237 SLAG--PSDKLRATFILTRAVINQLKDRVLAQLPTLE----YVSSFTVACAYIWSCIAK- 289
Query: 295 QESESEITDGDMIYHFVPVADCRERFEFPIPASYFGNCLAFLFISAKRSELMGKEGVVFA 354
+ D + F D R R + PIP +YFGNC+ AK + L+GKEG + A
Sbjct: 290 -------SRNDKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITA 342
Query: 355 AKAIG----RKIGELEKGALVGAEKWTSNLNEVVKTG---RVLAVGGSPKFGVYETDFGW 407
AK IG + + + + G L + + N++V G + V G+PK Y+ DFGW
Sbjct: 343 AKLIGENLHKTLTDYKDGVL---KDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGW 399
Query: 408 GRPKKLEFVHFGAYGSFSLAESRDEEGAIEIGLVIGRDKLD 448
G+PKKLE V G+ S+ ++ +EIG+ I +++
Sbjct: 400 GKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISATQME 440
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/449 (31%), Positives = 206/449 (45%), Gaps = 34/449 (7%)
Query: 7 VQVVDESHIAXXXXXXXXXXXXLTFLDVSWLFCCPIERILFYELPFPTRHLMQNIIXXXX 66
+ V+++S ++ LTF D WL PI + FYELP + ++
Sbjct: 7 LTVLEQSQVSPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELPITRSQFTETVVPNIK 66
Query: 67 XXXXXXXXXXXXXAGNL----ACNSKPFIQFNEGDSVRVTVTESDADFGHLVANHLRDNR 122
G L A KP I + EGDSV VT E + D L NH R N
Sbjct: 67 HSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPR-NC 125
Query: 123 AXXXXXXXXXXXXXXXXXDNKTPVMAIQVTVFPNSGISIGVTFIHVAADGSSFNHFMKSW 182
K P+ ++QVT+FPN GI+IG+T H D S+ F+K+W
Sbjct: 126 DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAW 185
Query: 183 ASIHKSVTVSET-LPPLSLPCHDRNVIKDPNGLLLSIYLKDWR-SVHNSDATAPAIDENV 240
SI +S E+ L + P +DR +IK P L YLK + N D ++
Sbjct: 186 TSIARSGNNDESFLANGTRPLYDR-IIKYPX--LDEAYLKRAKVESFNEDYVTQSLAG-- 240
Query: 241 QVDNVRVTLVPSRDQIDKLKQRVSAQIRSDDESPSRVSTFVVTSALMWVYMIELQESESE 300
D +R T + +R I++LK RV AQ+ + + VS+F V A +W + +
Sbjct: 241 PSDKLRATFILTRAVINQLKDRVLAQLPTLE----YVSSFTVACAYIWSCIAK------- 289
Query: 301 ITDGDMIYHFVPVADCRERFEFPIPASYFGNCLAFLFISAKRSELMGKEGVVFAAKAIG- 359
+ D + F D R R + PIP +YFGNC+ AK + L+GKEG + AAK IG
Sbjct: 290 -SRNDKLQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGE 348
Query: 360 ---RKIGELEKGALVGAEKWTSNLNEVVKTGRVLA---VGGSPKFGVYETDFGWGRPKKL 413
+ + + + G L + + N++V G V G+PK Y+ DFGWG+PKKL
Sbjct: 349 NLHKTLTDYKDGVL---KDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWGKPKKL 405
Query: 414 EFVHFGAYGSFSLAESRDEEGAIEIGLVI 442
E V G+ S+ ++ +EIG+ I
Sbjct: 406 ETVSIDHNGAISINSCKESNEDLEIGVCI 434
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 119/280 (42%), Gaps = 39/280 (13%)
Query: 146 VMAIQVTVFPNSGISIGVTFIHVAADGSSFNHFMKSWASIHKSVTVSETLPPLSLPCHDR 205
++ +QVT F G+S+GV H AADG S HF+ SW+ + + + V TLPP DR
Sbjct: 134 LLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV--TLPPFI----DR 187
Query: 206 NVIK---DPNGLLLSIYLKDWRSVHNSDATAPAIDENVQVDNVRVTLVP----SRDQIDK 258
+++ P I + ++ S TA + D+V T V +R+QI
Sbjct: 188 TLLRARDPPQPQFQHIEYQPPPALKVSPQTA-------KSDSVPETAVSIFKLTREQISA 240
Query: 259 LKQRVSAQIRSDDESPSRVSTFVVTSALMWVYMIELQESESEITDGDMIYHFVPVADCRE 318
LK + +D + S++ + + +W + E+ G +Y D R
Sbjct: 241 LKAK-----SKEDGNTISYSSYEMLAGHVW--RCACKARGLEVDQGTKLYI---ATDGRA 290
Query: 319 RFEFPIPASYFGNCLAFLFISAKRSELMGKEGVVFAAKAIGRKIGELEKGALVGAEKW-- 376
R +P YFGN + A +L K V +AA I + ++ L A +
Sbjct: 291 RLRPSLPPGYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDNDYLRSALDYLE 349
Query: 377 -TSNLNEVVKTGRV-----LAVGGSPKFGVYETDFGWGRP 410
+L +V+ L + + +++ DFGWGRP
Sbjct: 350 LQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRP 389
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 119/280 (42%), Gaps = 39/280 (13%)
Query: 146 VMAIQVTVFPNSGISIGVTFIHVAADGSSFNHFMKSWASIHKSVTVSETLPPLSLPCHDR 205
++ +QVT F G+S+GV H AADG S HF+ SW+ + + + V TLPP DR
Sbjct: 137 LLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV--TLPPFI----DR 190
Query: 206 NVI--KDPNGLLLSIYLKDWRSVHNSDATAPAID-ENVQVDNVRVTLVP----SRDQIDK 258
++ +DP ++ + A A+ + D+V T V +R+QI
Sbjct: 191 TLLRARDPP-------QPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISA 243
Query: 259 LKQRVSAQIRSDDESPSRVSTFVVTSALMWVYMIELQESESEITDGDMIYHFVPVADCRE 318
LK + +D + S++ + + +W + E+ G +Y D R
Sbjct: 244 LKAK-----SKEDGNTISYSSYEMLAGHVW--RCACKARGLEVDQGTKLYI---ATDGRA 293
Query: 319 RFEFPIPASYFGNCLAFLFISAKRSELMGKEGVVFAAKAIGRKIGELEKGALVGAEKW-- 376
R +P YFGN + A +L K V +AA I + ++ L A +
Sbjct: 294 RLRPSLPPGYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDNDYLRSALDYLE 352
Query: 377 -TSNLNEVVKTGRV-----LAVGGSPKFGVYETDFGWGRP 410
+L +V+ L + + +++ DFGWGRP
Sbjct: 353 LQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRP 392
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 119/280 (42%), Gaps = 39/280 (13%)
Query: 146 VMAIQVTVFPNSGISIGVTFIHVAADGSSFNHFMKSWASIHKSVTVSETLPPLSLPCHDR 205
++ +QVT F G+S+GV H AADG S HF+ SW+ + + + V TLPP DR
Sbjct: 137 LLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV--TLPPFI----DR 190
Query: 206 NVI--KDPNGLLLSIYLKDWRSVHNSDATAPAID-ENVQVDNVRVTLVP----SRDQIDK 258
++ +DP ++ + A A+ + D+V T V +R+QI
Sbjct: 191 TLLRARDPP-------QPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISA 243
Query: 259 LKQRVSAQIRSDDESPSRVSTFVVTSALMWVYMIELQESESEITDGDMIYHFVPVADCRE 318
LK + +D + S++ + + +W + E+ G +Y D R
Sbjct: 244 LKAK-----SKEDGNTISYSSYEMLAGHVW--RCACKARGLEVDQGTKLYI---ATDGRA 293
Query: 319 RFEFPIPASYFGNCLAFLFISAKRSELMGKEGVVFAAKAIGRKIGELEKGALVGAEKW-- 376
R +P YFGN + A +L K V +AA I + ++ L A +
Sbjct: 294 RLRPSLPPGYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDNDYLRSALDYLE 352
Query: 377 -TSNLNEVVKTGRV-----LAVGGSPKFGVYETDFGWGRP 410
+L +V+ L + + +++ DFGWGRP
Sbjct: 353 LQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRP 392
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 125/312 (40%), Gaps = 48/312 (15%)
Query: 147 MAIQVTVFPNSGISIGVTFIHVAADGSSFNHFMKSWASIHKSVTVSETLPPLSLPCHDRN 206
+A++++ F G +IGV H AD S F+ +W + C
Sbjct: 140 LAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTAT----------------CRGET 183
Query: 207 VIKDPNGLLLSIYLKDWRSVHNSDATAPAIDENVQVDNVRVTLVPSRDQIDKLKQRVSAQ 266
I PN + + + V N+ + DENV V V +++I L+ + S+
Sbjct: 184 EIVLPN---FDLAARHFPPVDNTPSPELVPDENV----VMKRFVFDKEKIGALRAQASSA 236
Query: 267 IRSDDESPSRVSTFVVTSALMWVYMIELQESESEITDGDMIYHFVPVADCRERFEFPIPA 326
S++++ SRV V A +W ++I++ ++ + ++ V + R R P+P
Sbjct: 237 --SEEKNFSRVQLVV---AYIWKHVIDVTRAKYGAKNKFVVVQAV---NLRSRMNPPLPH 288
Query: 327 SYFGNCLAFLFISAKRS------ELMGKEGVVFAAKAIGRKIGELEKGALVGAEKWTSNL 380
GN LF + +L+G K EL KG E
Sbjct: 289 YAMGNIATLLFAAVDAEWDKDFPDLIGPLRTSL-EKTEDDHNHELLKGMTCLYE------ 341
Query: 381 NEVVKTGRVLAVGGSPKFGVYETDFGWGRPKKLEFVHFGAYGSFSLAESRDEEGAIEIGL 440
++ +L+ + G Y+ DFGWG+P F + L ++R +G +E L
Sbjct: 342 ---LEPQELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDG-VEAWL 397
Query: 441 VIGRDKLDLLNV 452
+ D++ +L V
Sbjct: 398 PMAEDEMAMLPV 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,143,010
Number of Sequences: 62578
Number of extensions: 455328
Number of successful extensions: 846
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 8
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)