Query 012441
Match_columns 463
No_of_seqs 130 out of 535
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 09:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.9 4.3E-24 1.5E-28 220.0 38.0 415 8-434 10-440 (460)
2 3mkt_A Multi antimicrobial ext 99.0 3.2E-10 1.1E-14 116.1 9.3 194 231-433 11-210 (460)
3 1jy4_A B4dimer; eight-stranded 11.3 44 0.0015 19.5 -0.3 7 453-459 26-32 (35)
4 1ehs_A STB, heat-stable entero 7.3 98 0.0033 19.3 0.1 7 457-463 20-26 (48)
5 1lup_A GSMTX2; inhibitor cyste 5.1 1.9E+02 0.0066 17.0 0.5 6 454-459 17-22 (31)
6 1cix_A Protein (tachystatin A) 4.9 1.7E+02 0.0057 18.3 0.2 6 455-460 26-31 (44)
7 1xou_B Z5138 gene product; coi 4.6 1.6E+02 0.0055 21.2 -0.1 6 451-456 57-62 (95)
8 1iyc_A Scarabaecin; antifungal 4.4 1.4E+02 0.0047 17.5 -0.5 6 454-459 25-30 (36)
9 2zjs_Y Preprotein translocase 3.6 1.4E+03 0.047 22.3 5.8 51 278-334 83-133 (434)
10 1jy2_N Fibrinogen alpha chain; 3.5 1.9E+02 0.0067 19.3 -0.4 7 455-461 17-23 (53)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.94 E-value=4.3e-24 Score=220.04 Aligned_cols=415 Identities=13% Similarity=0.058 Sum_probs=285.3
Q ss_pred chhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccCCCCccchhh
Q 012441 8 HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREEN 87 (463)
Q Consensus 8 ~~~~~~~~~~~~~~~q~~~~~i~fi~~~iLaRlL~Pe~fGl~a~~l~~~~~~~~~ls~~G~~~a~~r~~~~~~~~~~~~~ 87 (463)
..+++.+.+.+.+++++.+.+.+++-+.++.| +|||++|.++++..+.. ....+ ..|+..+..+...+...++|+++
T Consensus 10 ~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~-~~~~~-~~g~~~~~~~~is~~~g~~~~~~ 86 (460)
T 3mkt_A 10 EASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWL-PSILF-GVGLLMALVPVVAQLNGAGRQHK 86 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHH-HHHHH-HHHHHHHHGGGCTTTTSSSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHcCCChhH
Confidence 45778899999999999999999999999999 89999999999776643 32333 37888888766554322222223
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q 012441 88 AAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV 161 (463)
Q Consensus 88 ~~~~~~~~~-~~~~~g~~~~~i~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~i~~l~~p~~~~~q~~~~~~~~~~~ 161 (463)
.++...... +....++.++++ .+...........++. ...+.+++...++..+.......+|.+.+++.....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (460)
T 3mkt_A 87 IPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI 165 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 344443333 444445544433 2221111122122332 134556666666766666666677888888888888
Q ss_pred HHHHHHHhHHHHHHHHhh-cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccccCCcccccHHHHHHHH
Q 012441 162 ETVATFSRCFTMCILIVK-QY-EMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCT 239 (463)
Q Consensus 162 ~~~~~~~~~~~~i~l~~~-~~-~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~ll~f~~ 239 (463)
...+.+.+.+....++.. .. +.+++.+.+++..+...+..+..+.+..++++....+..+.....+....|++++++.
T Consensus 166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (460)
T 3mkt_A 166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245 (460)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence 888888887777665532 10 1144444444444444333222222222111111001111100112233479999999
Q ss_pred HHHHHHHHHHHHHhhchhheecccCCccchhHHHHhhhhhHHHHHHHHhhHHhhHHHHHHHhcCCCchhHHHHHHHHHHH
Q 012441 240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA 319 (463)
Q Consensus 240 ~l~~~sl~~~l~t~~D~liig~~~~~~~~G~Y~~A~~l~sl~~~~v~~pi~~~~~p~fs~l~~~~~~~~~~~~~~~~~~~ 319 (463)
|.+.+++...+..+.|+.+++++ |++++|.|++++++.+++. .+..++.++..|..++...++|+|+.+ +.+++.
T Consensus 246 p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~~~~---~~~~~~ 320 (460)
T 3mkt_A 246 PVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTKGAA---IAANVG 320 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCCTTT---THHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHH---HHHHHH
Confidence 99999999999999999999999 9999999999999998776 677789999999999998665555444 357778
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhcChhHHHHhhhHHHHHH
Q 012441 320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFS 399 (463)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~a~~lv~ll~G~kw~~a~~~~il~~l~~~~~~~~~ng~~~~~~~a~~~~~~~~~~~~~~~~~~ 399 (463)
.+....+++|...+....+++++.++.+|+.......++++++++..++.+++......+.+.++++.....+ .+..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~ 397 (460)
T 3mkt_A 321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRT---FISY 397 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH---HHHH
Confidence 8888888888888878899999998887764322235799999999999999988888888888886653333 3444
Q ss_pred -HHHHHHHHHHHHh-------hchHHHHHHHHHHHHHHHHHhh
Q 012441 400 -VIYIVMNVILIQS-------AGSVGLILANSLSILLHCHCQP 434 (463)
Q Consensus 400 -ii~i~~~~~li~~-------~G~~G~~~a~~i~~~~r~~~~~ 434 (463)
++++++++++++. +|..|+.+|..++..++.+...
T Consensus 398 ~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~ 440 (460)
T 3mkt_A 398 WVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLG 440 (460)
T ss_dssp HHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHH
Confidence 7889999999998 9999999999999988877664
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.05 E-value=3.2e-10 Score=116.07 Aligned_cols=194 Identities=11% Similarity=0.052 Sum_probs=138.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhchhheecccCCccchhHHHHhhhhhHHHHHHHHhhHHhhHHHHHHHhcCCCchhHH
Q 012441 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (463)
Q Consensus 231 ~k~ll~f~~~l~~~sl~~~l~t~~D~liig~~~~~~~~G~Y~~A~~l~sl~~~~v~~pi~~~~~p~fs~l~~~~~~~~~~ 310 (463)
.|++++++.|++.+++...+++..|+.++|+ .|++++|.|+.+.++.... ..+...+.....|..++...++|+++
T Consensus 11 ~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~~-- 86 (460)
T 3mkt_A 11 ASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQHK-- 86 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChhH--
Confidence 3789999999999999999999999999999 8999999999999996543 35566777888888888765544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhcChhHHHH
Q 012441 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 390 (463)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~lv~ll~G~kw~~a~~~~il~~l~~~~~~~~~ng~~~~~~~a~~~~~~~~~ 390 (463)
.++.++....+...++++.... ...+++++.++.+++-........++++++..++..++.....++++.++.+..
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 162 (460)
T 3mkt_A 87 -IPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA-- 162 (460)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT--
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH--
Confidence 3446666777777777665543 456777776543222111112346777777777777776766666666665443
Q ss_pred hhhHHHHHHHHHHHHHHHHHH------hhchHHHHHHHHHHHHHHHHHh
Q 012441 391 SNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLSILLHCHCQ 433 (463)
Q Consensus 391 ~~~~~~~~~ii~i~~~~~li~------~~G~~G~~~a~~i~~~~r~~~~ 433 (463)
.....+..+++++++++++. .+|..|+++|..++..+.....
T Consensus 163 -~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~ 210 (460)
T 3mkt_A 163 -MVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLL 210 (460)
T ss_dssp -HHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHH
Confidence 34445677889999998886 4899999999888766554443
No 3
>1jy4_A B4dimer; eight-stranded beta-sheet, disulfide bond, de novo protein design; HET: DPR; NMR {Synthetic} SCOP: k.35.1.1 PDB: 1jy6_A*
Probab=11.30 E-value=44 Score=19.47 Aligned_cols=7 Identities=57% Similarity=1.279 Sum_probs=4.2
Q ss_pred hcccccc
Q 012441 453 SEGYKCR 459 (463)
Q Consensus 453 ~~~~~~~ 459 (463)
..||||.
T Consensus 26 lpgykce 32 (35)
T 1jy4_A 26 LPGYKCE 32 (35)
T ss_dssp ETTEEEE
T ss_pred cCCceeE
Confidence 4567764
No 4
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=7.28 E-value=98 Score=19.28 Aligned_cols=7 Identities=71% Similarity=1.668 Sum_probs=3.8
Q ss_pred ccccCCC
Q 012441 457 KCRKGFL 463 (463)
Q Consensus 457 ~~~~~~~ 463 (463)
.|.|||+
T Consensus 20 sckkgfl 26 (48)
T 1ehs_A 20 SCKKGFL 26 (48)
T ss_dssp HHHSCSS
T ss_pred HHhcccc
Confidence 4556654
No 5
>1lup_A GSMTX2; inhibitor cysteine knot, beta-sheet, toxin; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1v7f_A
Probab=5.07 E-value=1.9e+02 Score=17.02 Aligned_cols=6 Identities=67% Similarity=1.370 Sum_probs=3.6
Q ss_pred cccccc
Q 012441 454 EGYKCR 459 (463)
Q Consensus 454 ~~~~~~ 459 (463)
|||.||
T Consensus 17 eg~vC~ 22 (31)
T 1lup_A 17 EGLVCR 22 (31)
T ss_dssp SSSBCS
T ss_pred ccchHH
Confidence 566665
No 6
>1cix_A Protein (tachystatin A); antimicrobial peptide, chitin-binding peptide; NMR {Tachypleus tridentatus} SCOP: g.3.6.2
Probab=4.92 E-value=1.7e+02 Score=18.27 Aligned_cols=6 Identities=50% Similarity=1.276 Sum_probs=2.6
Q ss_pred cccccc
Q 012441 455 GYKCRK 460 (463)
Q Consensus 455 ~~~~~~ 460 (463)
||.||.
T Consensus 26 g~~cr~ 31 (44)
T 1cix_A 26 GLTCRS 31 (44)
T ss_dssp TCEEEE
T ss_pred ceEEcc
Confidence 444443
No 7
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=4.61 E-value=1.6e+02 Score=21.16 Aligned_cols=6 Identities=83% Similarity=1.298 Sum_probs=2.4
Q ss_pred hhhccc
Q 012441 451 KLSEGY 456 (463)
Q Consensus 451 ~~~~~~ 456 (463)
|++|||
T Consensus 57 ~liegy 62 (95)
T 1xou_B 57 KLIEGY 62 (95)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 344443
No 8
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=4.35 E-value=1.4e+02 Score=17.47 Aligned_cols=6 Identities=33% Similarity=1.514 Sum_probs=2.4
Q ss_pred cccccc
Q 012441 454 EGYKCR 459 (463)
Q Consensus 454 ~~~~~~ 459 (463)
.|+.|.
T Consensus 25 ngfdck 30 (36)
T 1iyc_A 25 NGFDCK 30 (36)
T ss_dssp ETTEEE
T ss_pred cCcccc
Confidence 344443
No 9
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=3.64 E-value=1.4e+03 Score=22.29 Aligned_cols=51 Identities=6% Similarity=0.045 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhHHhhHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012441 278 GSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFG 334 (463)
Q Consensus 278 ~sl~~~~v~~pi~~~~~p~fs~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 334 (463)
+|++.+++ ....|.+.++++| .+++.++.++..|..+-..+.+=......+
T Consensus 83 ASII~QLL-----~~vip~l~~l~ke-Ge~Gr~ki~~~tR~lti~la~iQa~~~~~~ 133 (434)
T 2zjs_Y 83 AAIIMQIL-----VTVVPALEKLSKE-GEEGRRIINQYTRIGGIALGAFQGFFLATA 133 (434)
T ss_dssp HHHHHHHH-----HHHSHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHhcchhhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_N
Probab=3.51 E-value=1.9e+02 Score=19.26 Aligned_cols=7 Identities=43% Similarity=0.904 Sum_probs=0.0
Q ss_pred ccccccC
Q 012441 455 GYKCRKG 461 (463)
Q Consensus 455 ~~~~~~~ 461 (463)
|+||..|
T Consensus 17 g~KCPsG 23 (53)
T 1jy2_N 17 NTKCPSG 23 (53)
T ss_dssp TTEEECH
T ss_pred CCCCCCc
Done!